Test Result : FeatureDatasetSuite

0 failures (±0)
86 tests (±0)
Took 39 sec.

All Tests

Test nameDurationStatus
correctly flatmaps CoverageDataset from FeatureDataset0.19 secPassed
don't lose any features when piping as BED format0.41 secPassed
don't lose any features when piping as GFF3 format0.54 secPassed
don't lose any features when piping as GTF format0.4 secPassed
don't lose any features when piping as NarrowPeak format0.44 secPassed
filter RDD bound features by attribute0.2 secPassed
filter RDD bound features by exon0.13 secPassed
filter RDD bound features by exons0.16 secPassed
filter RDD bound features by feature type0.22 secPassed
filter RDD bound features by feature types0.16 secPassed
filter RDD bound features by gene0.18 secPassed
filter RDD bound features by genes0.22 secPassed
filter RDD bound features by parent0.14 secPassed
filter RDD bound features by parents0.18 secPassed
filter RDD bound features by score0.17 secPassed
filter RDD bound features by transcript0.18 secPassed
filter RDD bound features by transcripts0.18 secPassed
filter dataset bound features by attribute0.3 secPassed
filter dataset bound features by exon0.25 secPassed
filter dataset bound features by exons0.24 secPassed
filter dataset bound features by feature type0.41 secPassed
filter dataset bound features by feature types0.42 secPassed
filter dataset bound features by gene0.29 secPassed
filter dataset bound features by genes0.29 secPassed
filter dataset bound features by parent0.26 secPassed
filter dataset bound features by parents0.28 secPassed
filter dataset bound features by score0.22 secPassed
filter dataset bound features by transcript0.32 secPassed
filter dataset bound features by transcripts0.28 secPassed
ignore FASTA sequence in GFF3 file0.13 secPassed
keeps sample metadata0.16 secPassed
load parquet to sql, save, re-read from avro1.6 secPassed
load partitioned parquet to sql, save, re-read from avro1.8 secPassed
obtain sequence dictionary contig lengths from header in IntervalList format0.16 secPassed
round trip BED12 format0.36 secPassed
round trip BED6 format0.43 secPassed
round trip GFF3 format0.35 secPassed
round trip GTF format0.45 secPassed
round trip IntervalList format0.51 secPassed
round trip NarrowPeak format0.27 secPassed
save BED as GFF3 format0.35 secPassed
save BED as GTF format0.32 secPassed
save BED as IntervalList format0.49 secPassed
save BED as NarrowPeak format0.35 secPassed
save GFF3 as BED format0.28 secPassed
save GFF3 as GTF format0.31 secPassed
save GFF3 as IntervalList format0.35 secPassed
save GFF3 as NarrowPeak format0.31 secPassed
save GTF as BED format0.31 secPassed
save GTF as GFF3 format0.29 secPassed
save GTF as IntervalList format0.34 secPassed
save GTF as NarrowPeak format0.28 secPassed
save IntervalList as BED format0.53 secPassed
save IntervalList as GFF3 format0.42 secPassed
save IntervalList as GTF format0.42 secPassed
save IntervalList as IntervalList format0.26 secPassed
save IntervalList as NarrowPeak format0.33 secPassed
save NarrowPeak as BED format0.28 secPassed
save NarrowPeak as GFF3 format0.3 secPassed
save NarrowPeak as GTF format0.25 secPassed
save NarrowPeak as IntervalList format0.34 secPassed
save NarrowPeak as NarrowPeak format0.17 secPassed
save to UCSC BED format0.33 secPassed
sort by reference0.4 secPassed
sort by reference and feature fields0.45 secPassed
sort exon features by reference and gene structure0.42 secPassed
sort gene features by reference and gene structure0.52 secPassed
sort intron features by reference and gene structure0.44 secPassed
sort transcript features by reference and gene structure0.49 secPassed
transform dataset via java API0.81 secPassed
transform features to contig rdd0.64 secPassed
transform features to coverage rdd0.73 secPassed
transform features to fragment rdd1.1 secPassed
transform features to genotype rdd1.2 secPassed
transform features to read rdd0.72 secPassed
transform features to variant context rdd0.24 secPassed
transform features to variant rdd1 secPassed
union two feature rdds together0.22 secPassed
use broadcast join to pull down features mapped to targets0.46 secPassed
use full outer shuffle join to pull down features mapped to targets1.1 secPassed
use left outer shuffle join to pull down features mapped to targets1 secPassed
use right outer broadcast join to pull down features mapped to targets0.49 secPassed
use right outer shuffle join to pull down features mapped to targets1 secPassed
use right outer shuffle join with group by to pull down features mapped to targets1.1 secPassed
use shuffle join to pull down features mapped to targets1.2 secPassed
use shuffle join with group by to pull down features mapped to targets1.1 secPassed