FailedConsole Output

Started by upstream project "ADAM-prb" build number 2992
originally caused by:
 GitHub pull request #2149 of commit 75e0d89e96d110e7211f113d54fb9649397541a5 automatically merged.
[EnvInject] - Loading node environment variables.
Building remotely on research-jenkins-worker-08 (ubuntu research-08) in workspace /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu
Wiping out workspace first.
Cloning the remote Git repository
Cloning repository https://github.com/bigdatagenomics/adam.git
 > git init /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu # timeout=10
Fetching upstream changes from https://github.com/bigdatagenomics/adam.git
 > git --version # timeout=10
 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/heads/*:refs/remotes/origin/* # timeout=15
 > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10
 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10
 > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10
Fetching upstream changes from https://github.com/bigdatagenomics/adam.git
 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/*:refs/remotes/origin/pr/* # timeout=15
Checking out Revision 646d138fa281f24592dba23dfac1851c61b354f8 (origin/pr/2149/merge)
 > git config core.sparsecheckout # timeout=10
 > git checkout -f 646d138fa281f24592dba23dfac1851c61b354f8
 > git rev-list 8f09a5504fee4f06243a20b42b534b17aef33d46 # timeout=10
First time build. Skipping changelog.
[ubuntu] $ /bin/bash /tmp/hudson1783949530960376551.sh
+ set -e
+ unset SPARK_TESTING
+ export JAVA_HOME=/usr/lib/jvm/java-8-oracle
+ JAVA_HOME=/usr/lib/jvm/java-8-oracle
+ export CONDA_BIN=/home/anaconda/bin/
+ CONDA_BIN=/home/anaconda/bin/
+ export PATH=/usr/lib/jvm/java-8-oracle/bin/:/home/anaconda/bin/:/home/jenkins/gems/bin:/usr/local/go/bin:/home/jenkins/go-projects/bin:/home/jenkins/anaconda2/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games
+ PATH=/usr/lib/jvm/java-8-oracle/bin/:/home/anaconda/bin/:/home/jenkins/gems/bin:/usr/local/go/bin:/home/jenkins/go-projects/bin:/home/jenkins/anaconda2/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games
+ set +x
+ /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/scripts/jenkins-test

# make a tempdir for writing maven cruft to
ADAM_MVN_TMP_DIR=$(mktemp -d -t adamTestMvnXXXXXXX)
mktemp -d -t adamTestMvnXXXXXXX
++ mktemp -d -t adamTestMvnXXXXXXX
+ ADAM_MVN_TMP_DIR=/tmp/adamTestMvnEoU0t8M

# add this tempdir to the poms...
find . -name pom.xml \
    -exec sed -i.bak \
    -e "s:sun.io.serialization.extendedDebugInfo=true:sun.io.serialization.extendedDebugInfo=true -Djava.io.tmpdir=${ADAM_MVN_TMP_DIR}:g" \
    {} \;
+ find . -name pom.xml -exec sed -i.bak -e 's:sun.io.serialization.extendedDebugInfo=true:sun.io.serialization.extendedDebugInfo=true -Djava.io.tmpdir=/tmp/adamTestMvnEoU0t8M:g' '{}' ';'
find . -name "*.bak" -exec rm -f {} \;
+ find . -name '*.bak' -exec rm -f '{}' ';'

# variable declarations
export PATH=${JAVA_HOME}/bin/:${PATH}
+ export PATH=/usr/lib/jvm/java-8-oracle/bin/:/usr/lib/jvm/java-8-oracle/bin/:/home/anaconda/bin/:/home/jenkins/gems/bin:/usr/local/go/bin:/home/jenkins/go-projects/bin:/home/jenkins/anaconda2/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games
+ PATH=/usr/lib/jvm/java-8-oracle/bin/:/usr/lib/jvm/java-8-oracle/bin/:/home/anaconda/bin/:/home/jenkins/gems/bin:/usr/local/go/bin:/home/jenkins/go-projects/bin:/home/jenkins/anaconda2/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games
export MAVEN_OPTS="-Xmx1536m -XX:MaxPermSize=1g -Dfile.encoding=utf-8"
+ export 'MAVEN_OPTS=-Xmx1536m -XX:MaxPermSize=1g -Dfile.encoding=utf-8'
+ MAVEN_OPTS='-Xmx1536m -XX:MaxPermSize=1g -Dfile.encoding=utf-8'
DIR=$( cd $( dirname ${BASH_SOURCE[0]} ) && pwd )
 cd $( dirname ${BASH_SOURCE[0]} ) && pwd 
 dirname ${BASH_SOURCE[0]} 
+++ dirname /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/scripts/jenkins-test
++ cd /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/scripts
++ pwd
+ DIR=/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/scripts
PROJECT_ROOT=${DIR}/..
+ PROJECT_ROOT=/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/scripts/..
VERSION=$(grep "<version>" ${PROJECT_ROOT}/pom.xml  | head -2 | tail -1 | sed 's/ *<version>//g' | sed 's/<\/version>//g')
grep "<version>" ${PROJECT_ROOT}/pom.xml  | head -2 | tail -1 | sed 's/ *<version>//g' | sed 's/<\/version>//g'
++ grep '<version>' /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/scripts/../pom.xml
++ head -2
++ tail -1
++ sed 's/ *<version>//g'
++ sed 's/<\/version>//g'
+ VERSION=0.27.0-SNAPSHOT

# is the hadoop version set?
if ! [[ ${HADOOP_VERSION} ]];
then
    echo "HADOOP_VERSION environment variable is not set."
    echo "Please set this variable before running."
    
    exit 1
fi
+ [[ -n 2.7.5 ]]

# is the spark version set?
if ! [[ ${SPARK_VERSION} ]];
then
    echo "SPARK_VERSION environment variable is not set."
    echo "Please set this variable before running."
    
    exit 1
fi
+ [[ -n 2.4.3 ]]

set -e
+ set -e

# build defaults to Scala 2.11
if [ ${SCALAVER} == 2.11 ];
then
    # shouldn't be able to move to scala 2.11 twice
    set +e
    ./scripts/move_to_scala_2.11.sh
    if [[ $? == 0 ]];
    then
        echo "We have already moved to Scala 2.11, so running move_to_scala_2.11.sh a second time should fail, but error code was 0 (success)."
        exit 1
    fi
    set -e
fi
+ '[' 2.11 == 2.11 ']'
+ set +e
+ ./scripts/move_to_scala_2.11.sh
Scala version is already set to 2.11 (Scala artifacts have _2.11 version suffix in artifact name).
Cowardly refusing to move to Scala 2.11 a second time...
+ [[ 1 == 0 ]]
+ set -e

# move to Scala 2.12 if requested
if [ ${SCALAVER} == 2.12 ];
then
    set +e
    ./scripts/move_to_scala_2.12.sh
    set -e
fi
+ '[' 2.11 == 2.12 ']'

# print versions
echo "Testing ADAM version ${VERSION} on Spark ${SPARK_VERSION} and Hadoop ${HADOOP_VERSION}"
+ echo 'Testing ADAM version 0.27.0-SNAPSHOT on Spark 2.4.3 and Hadoop 2.7.5'
Testing ADAM version 0.27.0-SNAPSHOT on Spark 2.4.3 and Hadoop 2.7.5

# first, build the sources, run the unit tests, and generate a coverage report
mvn clean \
    -Dhadoop.version=${HADOOP_VERSION}
+ mvn clean -Dhadoop.version=2.7.5
Java HotSpot(TM) 64-Bit Server VM warning: ignoring option MaxPermSize=1g; support was removed in 8.0
[INFO] Scanning for projects...
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Build Order:
[INFO] 
[INFO] ADAM_2.11
[INFO] ADAM_2.11: Shader workaround
[INFO] ADAM_2.11: Avro-to-Dataset codegen utils
[INFO] ADAM_2.11: Core
[INFO] ADAM_2.11: APIs for Java, Python
[INFO] ADAM_2.11: CLI
[INFO] ADAM_2.11: Assembly
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ADAM_2.11 0.27.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ adam-parent-spark2_2.11 ---
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ADAM_2.11: Shader workaround 0.27.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ adam-shade-spark2_2.11 ---
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ADAM_2.11: Avro-to-Dataset codegen utils 0.27.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ adam-codegen-spark2_2.11 ---
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ADAM_2.11: Core 0.27.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ adam-core-spark2_2.11 ---
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ADAM_2.11: APIs for Java, Python 0.27.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ adam-apis-spark2_2.11 ---
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ADAM_2.11: CLI 0.27.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ adam-cli-spark2_2.11 ---
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ADAM_2.11: Assembly 0.27.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ adam-assembly-spark2_2.11 ---
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO] 
[INFO] ADAM_2.11 .......................................... SUCCESS [  0.203 s]
[INFO] ADAM_2.11: Shader workaround ....................... SUCCESS [  0.010 s]
[INFO] ADAM_2.11: Avro-to-Dataset codegen utils ........... SUCCESS [  0.009 s]
[INFO] ADAM_2.11: Core .................................... SUCCESS [  0.012 s]
[INFO] ADAM_2.11: APIs for Java, Python ................... SUCCESS [  0.001 s]
[INFO] ADAM_2.11: CLI ..................................... SUCCESS [  0.026 s]
[INFO] ADAM_2.11: Assembly ................................ SUCCESS [  0.002 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESS
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 0.495 s
[INFO] Finished at: 2019-05-15T14:42:06-07:00
[INFO] Final Memory: 23M/1472M
[INFO] ------------------------------------------------------------------------
    
# if this is a pull request, we need to set the coveralls pr id
if [[ ! -z $ghprbPullId ]];
then
    COVERALLS_PRB_OPTION="-DpullRequest=${ghprbPullId}"
fi
+ [[ ! -z 2149 ]]
+ COVERALLS_PRB_OPTION=-DpullRequest=2149

# coveralls token should not be visible
set +x +v
+ set +x +v
Java HotSpot(TM) 64-Bit Server VM warning: ignoring option MaxPermSize=1g; support was removed in 8.0
[INFO] Scanning for projects...
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Build Order:
[INFO] 
[INFO] ADAM_2.11
[INFO] ADAM_2.11: Shader workaround
[INFO] ADAM_2.11: Avro-to-Dataset codegen utils
[INFO] ADAM_2.11: Core
[INFO] ADAM_2.11: APIs for Java, Python
[INFO] ADAM_2.11: CLI
[INFO] ADAM_2.11: Assembly
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ADAM_2.11 0.27.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-parent-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-parent-spark2_2.11 ---
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-parent-spark2_2.11 ---
[INFO] Modified 0 of 239 .scala files
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-parent-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-parent-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] >>> scoverage-maven-plugin:1.1.1:report (default-cli) > [scoverage]test @ adam-parent-spark2_2.11 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-parent-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-parent-spark2_2.11 ---
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-parent-spark2_2.11 ---
[INFO] Modified 0 of 239 .scala files
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:pre-compile (default-cli) @ adam-parent-spark2_2.11 ---
[INFO] Skipping SCoverage execution for project with packaging type 'pom'
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-parent-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:post-compile (default-cli) @ adam-parent-spark2_2.11 ---
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-parent-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] <<< scoverage-maven-plugin:1.1.1:report (default-cli) < [scoverage]test @ adam-parent-spark2_2.11 <<<
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:report (default-cli) @ adam-parent-spark2_2.11 ---
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ADAM_2.11: Shader workaround 0.27.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-shade-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-shade-spark2_2.11 ---
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-shade-spark2_2.11 ---
[INFO] Modified 0 of 0 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-shade-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-shade/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-shade-spark2_2.11 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-shade/src/main/java:-1: info: compiling
[INFO] Compiling 1 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-shade/target/2.11.12/classes at 1557956540105
[INFO] prepare-compile in 0 s
[INFO] compile in 1 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-shade-spark2_2.11 ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 1 source file to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-shade/target/2.11.12/classes
[INFO] 
[INFO] --- plexus-component-metadata:1.5.5:generate-metadata (default) @ adam-shade-spark2_2.11 ---
[INFO] Discovered 1 component descriptors(s)
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-shade-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-shade/src/test/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-shade-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-shade-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-shade-spark2_2.11 ---
[INFO] No tests to run.
[INFO] 
[INFO] >>> scoverage-maven-plugin:1.1.1:report (default-cli) > [scoverage]test @ adam-shade-spark2_2.11 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-shade-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-shade-spark2_2.11 ---
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-shade-spark2_2.11 ---
[INFO] Modified 0 of 0 .scala files
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:pre-compile (default-cli) @ adam-shade-spark2_2.11 ---
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-shade-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-shade/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-shade-spark2_2.11 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-shade/src/main/java:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-shade/target/generated-sources/annotations:-1: info: compiling
[INFO] Compiling 1 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-shade/target/2.11.12/scoverage-classes at 1557956542213
[INFO] [info] Cleaning datadir [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-shade/target/scoverage-data]
[INFO] [info] Beginning coverage instrumentation
[INFO] [info] Instrumentation completed [0 statements]
[INFO] [info] Wrote instrumentation file [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-shade/target/scoverage-data/scoverage.coverage.xml]
[INFO] [info] Will write measurement data to [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-shade/target/scoverage-data]
[INFO] prepare-compile in 0 s
[INFO] compile in 1 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-shade-spark2_2.11 ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 1 source file to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-shade/target/2.11.12/scoverage-classes
[INFO] 
[INFO] --- plexus-component-metadata:1.5.5:generate-metadata (default) @ adam-shade-spark2_2.11 ---
[INFO] Discovered 1 component descriptors(s)
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:post-compile (default-cli) @ adam-shade-spark2_2.11 ---
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-shade-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-shade/src/test/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-shade-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-shade-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-shade-spark2_2.11 ---
[INFO] No tests to run.
[INFO] 
[INFO] <<< scoverage-maven-plugin:1.1.1:report (default-cli) < [scoverage]test @ adam-shade-spark2_2.11 <<<
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:report (default-cli) @ adam-shade-spark2_2.11 ---
[INFO] [scoverage] Generating cobertura XML report...
[INFO] [scoverage] Generating scoverage XML report...
[INFO] [scoverage] Generating scoverage HTML report...
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ADAM_2.11: Avro-to-Dataset codegen utils 0.27.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-codegen-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-codegen-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-codegen-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-codegen/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-codegen-spark2_2.11 ---
[INFO] Modified 0 of 4 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-codegen-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-codegen/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-codegen-spark2_2.11 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-codegen/src/main/scala:-1: info: compiling
[INFO] Compiling 4 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-codegen/target/2.11.12/classes at 1557956543953
[INFO] prepare-compile in 0 s
[INFO] compile in 3 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-codegen-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-codegen-spark2_2.11 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-codegen/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-codegen-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-codegen/src/test/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-codegen-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-codegen-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-codegen-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-codegen-spark2_2.11 ---
Discovery starting.
Discovery completed in 56 milliseconds.
Run starting. Expected test count is: 0
DiscoverySuite:
Run completed in 82 milliseconds.
Total number of tests run: 0
Suites: completed 1, aborted 0
Tests: succeeded 0, failed 0, canceled 0, ignored 0, pending 0
No tests were executed.
[INFO] 
[INFO] >>> scoverage-maven-plugin:1.1.1:report (default-cli) > [scoverage]test @ adam-codegen-spark2_2.11 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-codegen-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-codegen-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-codegen-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-codegen/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-codegen-spark2_2.11 ---
[INFO] Modified 0 of 4 .scala files
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:pre-compile (default-cli) @ adam-codegen-spark2_2.11 ---
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-codegen-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-codegen/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-codegen-spark2_2.11 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-codegen/src/main/scala:-1: info: compiling
[INFO] Compiling 4 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-codegen/target/2.11.12/scoverage-classes at 1557956548388
[INFO] [info] Cleaning datadir [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-codegen/target/scoverage-data]
[INFO] [info] Beginning coverage instrumentation
[INFO] [info] Instrumentation completed [0 statements]
[INFO] [info] Wrote instrumentation file [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-codegen/target/scoverage-data/scoverage.coverage.xml]
[INFO] [info] Will write measurement data to [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-codegen/target/scoverage-data]
[INFO] prepare-compile in 0 s
[INFO] compile in 3 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-codegen-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:post-compile (default-cli) @ adam-codegen-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-codegen-spark2_2.11 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-codegen/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-codegen-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-codegen/src/test/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-codegen-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-codegen-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-codegen-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-codegen-spark2_2.11 ---
Discovery starting.
Discovery completed in 58 milliseconds.
Run starting. Expected test count is: 0
DiscoverySuite:
Run completed in 84 milliseconds.
Total number of tests run: 0
Suites: completed 1, aborted 0
Tests: succeeded 0, failed 0, canceled 0, ignored 0, pending 0
No tests were executed.
[INFO] 
[INFO] <<< scoverage-maven-plugin:1.1.1:report (default-cli) < [scoverage]test @ adam-codegen-spark2_2.11 <<<
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:report (default-cli) @ adam-codegen-spark2_2.11 ---
[INFO] [scoverage] Generating cobertura XML report...
[INFO] [scoverage] Generating scoverage XML report...
[INFO] [scoverage] Generating scoverage HTML report...
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ADAM_2.11: Core 0.27.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-core-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-core-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-core-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/main/scala added.
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/target/generated-sources/src/main/scala added.
[INFO] 
[INFO] --- exec-maven-plugin:1.5.0:java (generate-scala-products) @ adam-core-spark2_2.11 ---
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] 
[INFO] --- exec-maven-plugin:1.5.0:java (generate-scala-projection-fields) @ adam-core-spark2_2.11 ---
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-core-spark2_2.11 ---
[INFO] Modified 2 of 199 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-core-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-core-spark2_2.11 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/main/java:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/main/scala:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/target/generated-sources/src/main/scala:-1: info: compiling
[INFO] Compiling 136 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/target/2.11.12/classes at 1557956560278
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicDataset.scala:3099: warning: no valid targets for annotation on value uTag - it is discarded unused. You may specify targets with meta-annotations, e.g. @(transient @getter)
[WARNING]   @transient val uTag: TypeTag[U]
[WARNING]    ^
[WARNING] warning: there were 84 deprecation warnings; re-run with -deprecation for details
[WARNING] warning: there were 5 feature warnings; re-run with -feature for details
[WARNING] three warnings found
[INFO] prepare-compile in 0 s
[INFO] compile in 29 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-core-spark2_2.11 ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 6 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/target/2.11.12/classes
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-core-spark2_2.11 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-core-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 150 resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-core-spark2_2.11 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala:-1: info: compiling
[INFO] Compiling 69 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/target/2.11.12/test-classes at 1557956592372
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/algorithms/consensus/NormalizationUtilsSuite.scala:59: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]       .build()
[WARNING]             ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/algorithms/consensus/NormalizationUtilsSuite.scala:61: warning: method richRecordToRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     val new_cigar = NormalizationUtils.leftAlignIndel(read)
[WARNING]                                                       ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/algorithms/consensus/NormalizationUtilsSuite.scala:66: warning: method richRecordToRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     assert(RichAlignmentRecord(read).samtoolsCigar.getReadLength === new_cigar.getReadLength)
[WARNING]                                ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/SAMRecordConverterSuite.scala:54: warning: method getNotPrimaryAlignmentFlag in class SAMRecord is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(!testAlignmentRecord.getPrimaryAlignment === testSAMRecord.getNotPrimaryAlignmentFlag)
[WARNING]                                                                       ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/SAMRecordConverterSuite.scala:89: warning: method getNotPrimaryAlignmentFlag in class SAMRecord is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(!testAlignmentRecord.getPrimaryAlignment === testSAMRecord.getNotPrimaryAlignmentFlag)
[WARNING]                                                                       ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:53: warning: method extractDictionary in object SAMSequenceDictionaryExtractor is deprecated: see corresponding Javadoc for more information.
[WARNING]     SequenceDictionary(SAMSequenceDictionaryExtractor.extractDictionary(new File(path)))
[WARNING]                                                       ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/CoverageSuite.scala:37: warning: variable start in class Feature is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(coverageAfterConversion.start == featureToConvert.start)
[WARNING]                                                              ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/CoverageSuite.scala:38: warning: variable end in class Feature is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(coverageAfterConversion.end == featureToConvert.end)
[WARNING]                                                            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/CoverageSuite.scala:40: warning: variable score in class Feature is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(coverageAfterConversion.count == featureToConvert.score)
[WARNING]                                                              ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/CoverageSuite.scala:57: warning: variable start in class Feature is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(coverageAfterConversion.start == featureToConvert.start)
[WARNING]                                                              ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/CoverageSuite.scala:58: warning: variable end in class Feature is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(coverageAfterConversion.end == featureToConvert.end)
[WARNING]                                                            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/CoverageSuite.scala:60: warning: variable score in class Feature is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(coverageAfterConversion.count == featureToConvert.score)
[WARNING]                                                              ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/CoverageSuite.scala:61: warning: variable sampleId in class Feature is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(coverageAfterConversion.optSampleId == Some(featureToConvert.sampleId))
[WARNING]                                                                         ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/MdTagSuite.scala:194: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     assert(read.mdTag.get.end === read.getEnd)
[WARNING]            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/MdTagSuite.scala:475: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     val tag = read.mdTag.get
[WARNING]               ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/MdTagSuite.scala:482: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     assert(tag.getReference(read) === "AAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGGGGAAAAAAAAAAGGGGGGGGGGAAAAAAAAAAA")
[WARNING]                             ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/MdTagSuite.scala:495: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     val tag = read.mdTag.get
[WARNING]               ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/MdTagSuite.scala:496: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     assert(tag.getReference(read, withGaps = true) === "AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGGGGAAAAAAAAAAA")
[WARNING]                             ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/MdTagSuite.scala:510: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     val newTag = MdTag.moveAlignment(read, newCigar)
[WARNING]                                      ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/MdTagSuite.scala:526: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     val newTag = MdTag.moveAlignment(read, newCigar, "AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA", 100L)
[WARNING]                                      ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/MdTagSuite.scala:544: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     val newTag = MdTag.moveAlignment(read, newCigar, "GGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA", 100L)
[WARNING]                                      ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/MdTagSuite.scala:562: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     val newTag = MdTag.moveAlignment(read, newCigar, "AAAAAAAAAAGGGGGGGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA", 100L)
[WARNING]                                      ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/MdTagSuite.scala:580: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     val newTag = MdTag.moveAlignment(read, newCigar, "AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA", 100L)
[WARNING]                                      ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/SequenceDictionarySuite.scala:48: warning: method extractDictionary in object SAMSequenceDictionaryExtractor is deprecated: see corresponding Javadoc for more information.
[WARNING]     val ssd = SAMSequenceDictionaryExtractor.extractDictionary(new File(path))
[WARNING]                                              ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/SequenceDictionarySuite.scala:62: warning: method extractDictionary in object SAMSequenceDictionaryExtractor is deprecated: see corresponding Javadoc for more information.
[WARNING]     val ssd = SAMSequenceDictionaryExtractor.extractDictionary(new File(path))
[WARNING]                                              ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/SequenceDictionarySuite.scala:75: warning: method extractDictionary in object SAMSequenceDictionaryExtractor is deprecated: see corresponding Javadoc for more information.
[WARNING]     val ssd = SAMSequenceDictionaryExtractor.extractDictionary(new File(path))
[WARNING]                                              ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/contig/NucleotideContigFragmentDatasetSuite.scala:742: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/contig/NucleotideContigFragmentDatasetSuite.scala:770: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/contig/NucleotideContigFragmentDatasetSuite.scala:801: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/contig/NucleotideContigFragmentDatasetSuite.scala:832: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/contig/NucleotideContigFragmentDatasetSuite.scala:863: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/contig/NucleotideContigFragmentDatasetSuite.scala:894: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/feature/CoverageDatasetSuite.scala:309: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/feature/CoverageDatasetSuite.scala:340: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/feature/CoverageDatasetSuite.scala:371: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/feature/CoverageDatasetSuite.scala:402: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/feature/CoverageDatasetSuite.scala:433: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/feature/CoverageDatasetSuite.scala:464: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/feature/FeatureDatasetSuite.scala:1022: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/feature/FeatureDatasetSuite.scala:1053: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/feature/FeatureDatasetSuite.scala:1081: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/feature/FeatureDatasetSuite.scala:1112: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/feature/FeatureDatasetSuite.scala:1143: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/feature/FeatureDatasetSuite.scala:1174: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/fragment/FragmentDatasetSuite.scala:400: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/fragment/FragmentDatasetSuite.scala:431: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/fragment/FragmentDatasetSuite.scala:459: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/fragment/FragmentDatasetSuite.scala:490: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/fragment/FragmentDatasetSuite.scala:521: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/fragment/FragmentDatasetSuite.scala:552: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordDatasetSuite.scala:1438: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordDatasetSuite.scala:1460: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordDatasetSuite.scala:1491: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordDatasetSuite.scala:1519: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordDatasetSuite.scala:1550: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordDatasetSuite.scala:1581: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordDatasetSuite.scala:1613: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTargetSuite.scala:83: warning: method richRecordToRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     assert(TargetOrdering.contains(targets.head, read))
[WARNING]                                                  ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTargetSuite.scala:191: warning: method richRecordToRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]         if (read.getStart < 105) {
[WARNING]             ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTargetSuite.scala:194: warning: method richRecordToRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]           assert(targets.head.readRange.start === read.getStart)
[WARNING]                                                   ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTargetSuite.scala:195: warning: method richRecordToRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]           assert(targets.head.readRange.end === read.getEnd)
[WARNING]                                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTargetSuite.scala:196: warning: method richRecordToRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]           assert(check_indel(targets.head, read))
[WARNING]                                            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:406: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:437: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:465: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:496: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:527: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:558: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:697: warning: variable end in class Genotype is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(first.end === 16157602L)
[WARNING]                  ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:698: warning: variable end in class Variant is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(first.variant.end === 16157602L)
[WARNING]                          ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:698: warning: variable variant in class Genotype is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(first.variant.end === 16157602L)
[WARNING]                  ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:699: warning: variable annotation in class Variant is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(first.variant.annotation === null)
[WARNING]                          ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:699: warning: variable variant in class Genotype is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(first.variant.annotation === null)
[WARNING]                  ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:710: warning: variable end in class Genotype is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(firstVcfGenotype.end === 16157602L)
[WARNING]                             ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:712: warning: variable end in class Variant is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(firstVcfGenotype.variant.end === 16157602L)
[WARNING]                                     ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:712: warning: variable variant in class Genotype is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(firstVcfGenotype.variant.end === 16157602L)
[WARNING]                             ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:714: warning: variable annotation in class Variant is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(firstVcfGenotype.variant.annotation === null)
[WARNING]                                     ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:714: warning: variable variant in class Genotype is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(firstVcfGenotype.variant.annotation === null)
[WARNING]                             ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:745: warning: variable end in class Genotype is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(first.end === 16157602L)
[WARNING]                  ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:746: warning: variable end in class Variant is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(first.variant.end === 16157602L)
[WARNING]                          ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:746: warning: variable variant in class Genotype is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(first.variant.end === 16157602L)
[WARNING]                  ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:747: warning: variable attributes in class VariantAnnotation is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(first.variant.annotation.attributes.get("END") === "16157602")
[WARNING]                                     ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:747: warning: variable annotation in class Variant is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(first.variant.annotation.attributes.get("END") === "16157602")
[WARNING]                          ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:747: warning: variable variant in class Genotype is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(first.variant.annotation.attributes.get("END") === "16157602")
[WARNING]                  ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:758: warning: variable end in class Genotype is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(firstVcfGenotype.end === 16157602L)
[WARNING]                             ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:759: warning: variable end in class Variant is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(firstVcfGenotype.variant.end === 16157602L)
[WARNING]                                     ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:759: warning: variable variant in class Genotype is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(firstVcfGenotype.variant.end === 16157602L)
[WARNING]                             ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:760: warning: variable attributes in class VariantAnnotation is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(firstVcfGenotype.variant.annotation.attributes.get("END") === "16157602")
[WARNING]                                                ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:760: warning: variable annotation in class Variant is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(firstVcfGenotype.variant.annotation.attributes.get("END") === "16157602")
[WARNING]                                     ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:760: warning: variable variant in class Genotype is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(firstVcfGenotype.variant.annotation.attributes.get("END") === "16157602")
[WARNING]                             ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/VariantContextDatasetSuite.scala:181: warning: variable start in class Genotype is deprecated: see corresponding Javadoc for more information.
[WARNING]     val filtered = vcs.toGenotypes().rdd.filter(_.start == 66631043)
[WARNING]                                                   ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/VariantDatasetSuite.scala:422: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/VariantDatasetSuite.scala:453: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/VariantDatasetSuite.scala:481: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/VariantDatasetSuite.scala:512: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/VariantDatasetSuite.scala:543: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/VariantDatasetSuite.scala:574: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichAlignmentRecordSuite.scala:31: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     assert(recordWithoutClipping.unclippedStart == 42L)
[WARNING]            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichAlignmentRecordSuite.scala:32: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     assert(recordWithClipping.unclippedStart == 40L)
[WARNING]            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichAlignmentRecordSuite.scala:33: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     assert(recordWithHardClipping.unclippedStart == 37L)
[WARNING]            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichAlignmentRecordSuite.scala:41: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     assert(recordWithoutClipping.unclippedEnd == 20L)
[WARNING]            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichAlignmentRecordSuite.scala:42: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     assert(recordWithClipping.unclippedEnd == 20L)
[WARNING]            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichAlignmentRecordSuite.scala:43: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     assert(recordWithHardClipping.unclippedEnd == 20L)
[WARNING]            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichAlignmentRecordSuite.scala:49: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     assert(rec.tags.size === 2)
[WARNING]            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichAlignmentRecordSuite.scala:50: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     assert(rec.tags(0) === Attribute("XX", TagType.Integer, 3))
[WARNING]            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichAlignmentRecordSuite.scala:51: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     assert(rec.tags(1) === Attribute("YY", TagType.String, "foo"))
[WARNING]            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichAlignmentRecordSuite.scala:57: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     val overlaps = unmappedRead.overlapsReferencePosition(ReferencePosition("chr1", 10))
[WARNING]                    ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichCigarSuite.scala:34: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     val newCigar = RichCigar(new Cigar(read.samtoolsCigar.getCigarElements)).moveLeft(1)
[WARNING]                                        ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichCigarSuite.scala:37: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     assert(newCigar2.cigar.getReadLength == read.samtoolsCigar.getReadLength)
[WARNING]                                             ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichCigarSuite.scala:49: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     val newCigar = RichCigar(new Cigar(read.samtoolsCigar.getCigarElements)).moveLeft(1)
[WARNING]                                        ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichCigarSuite.scala:52: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     assert(newCigar2.cigar.getReadLength == read.samtoolsCigar.getReadLength)
[WARNING]                                             ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichCigarSuite.scala:64: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     val newCigar = RichCigar(new Cigar(read.samtoolsCigar.getCigarElements)).moveLeft(1)
[WARNING]                                        ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichCigarSuite.scala:66: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     assert(newCigar.cigar.getReadLength == read.samtoolsCigar.getReadLength)
[WARNING]                                            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichCigarSuite.scala:78: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     val newCigar = RichCigar(new Cigar(read.samtoolsCigar.getCigarElements)).moveLeft(1)
[WARNING]                                        ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichCigarSuite.scala:80: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     assert(newCigar.cigar.getReadLength == read.samtoolsCigar.getReadLength)
[WARNING]                                            ^
[WARNING] 115 warnings found
[INFO] prepare-compile in 0 s
[INFO] compile in 35 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-core-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-core-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-core-spark2_2.11 ---
Discovery starting.
Discovery completed in 1 second, 980 milliseconds.
Run starting. Expected test count is: 1146
RepairPartitionsSuite:
- don't pull from the first partition
- properly handle pulling from an empty iterator
- gets a single read from the partition if there are no other reads in the pair
- gets all the reads from a pair from the start of a partition
- properly handle dropping from an empty iterator
- don't drop from the first partition
- drop a single read from the partition if there are no other reads in the pair
- drops all the reads from a pair from the start of a partition
- only append to the first partition
- drop a single read from the partition and append read when in the middle
- drop reads from the start and don't append when in the last partition
- can't have more records than number of partitions
- unroll array for broadcast
2019-05-15 14:43:50 WARN  Utils:66 - Your hostname, research-jenkins-worker-08 resolves to a loopback address: 127.0.1.1; using 192.168.10.28 instead (on interface eth0)
2019-05-15 14:43:50 WARN  Utils:66 - Set SPARK_LOCAL_IP if you need to bind to another address
2019-05-15 14:43:50 WARN  NativeCodeLoader:62 - Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
- move pairs around an rdd
FlagStatSuite:
- Standard FlagStat test
ModPartitionerSuite:
- report number of partitions correctly
- partition a number that is lower than the number of partitions and positive
- partition a number that is greater than the number of partitions and positive
- partition a number that is lower than the number of partitions and negative
- partition a number that is greater than the number of partitions and negative
- fire an exception if input is not an integer
TwoBitFileSuite:
- correctly read sequence from .2bit file
- correctly return masked sequences from .2bit file
- correctly return Ns from .2bit file
- correctly calculates sequence dictionary
NonoverlappingRegionsSuite:
- alternating returns an alternating seq of items
- Single region returns itself
- Two adjacent regions will be merged
- Nonoverlapping regions will all be returned
- Many overlapping regions will all be merged
- ADAMRecords return proper references
FlankReferenceFragmentsSuite:
- don't put flanks on non-adjacent fragments
- put flanks on adjacent fragments
ReferencePositionSuite:
- create reference position from mapped read
- create reference position from variant
- create reference position from genotype
- create reference position from variant starting at vcf 0
- create reference position from genotype starting at vcf 0
ConsensusGeneratorFromReadsSuite:
- checking search for consensus list for artificial reads
FragmentConverterSuite:
- build a fragment collector and convert to a read
- if a fragment isn't associated with a contig, don't get a fragment collector
- convert an rdd of discontinuous fragments, all from the same contig
- convert an rdd of contiguous fragments, all from the same contig
- convert an rdd of varied fragments from multiple contigs
FileMergerSuite:
- cannot write both empty gzip block and cram eof
- buffer size must be non-negative
AlignmentRecordDatasetSuite:
- sorting reads
- unmapped reads go at the end when sorting
- coverage does not fail on unmapped reads
2019-05-15 14:44:00 WARN  Utils:66 - Truncated the string representation of a plan since it was too large. This behavior can be adjusted by setting 'spark.debug.maxToStringFields' in SparkEnv.conf.
- computes coverage
- computes coverage with multiple samples
- merges adjacent records with equal coverage values
- sorting reads by reference index
- round trip from ADAM to SAM and back to ADAM produces equivalent Read values
- round trip with single CRAM file produces equivalent Read values
- round trip with sharded CRAM file produces equivalent Read values
- SAM conversion sets read mapped flag properly
- load long FASTQ reads
- load FASTQ with no bases
- convert malformed FASTQ (no quality scores) => SAM => well-formed FASTQ => SAM
- round trip from ADAM to FASTQ and back to ADAM produces equivalent Read values
- round trip from ADAM to paired-FASTQ and back to ADAM produces equivalent Read values
- writing a small file with tags should produce the expected result
- writing a small sorted file as SAM should produce the expected result
- writing unordered sam from unordered sam
- writing ordered sam from unordered sam
- write single sam file back
- write single bam file back
- saveAsParquet with save args, sequence dictionary, and read group dictionary
- load parquet to sql, save, re-read from avro
- load from sam, save as partitioned parquet, and re-read from partitioned parquet
- save as SAM format
- save as sorted SAM format
- save as BAM format
- save as sorted BAM format
- save as FASTQ format
- save as ADAM parquet format
- saveAsSam SAM format
- saveAsSam SAM format single file
- saveAsSam sorted SAM format single file
- saveAsSam BAM format
- saveAsSam BAM format single file
- saveAsSam sorted BAM format single file
- saveAsFastq
- saveAsFastq as single file
- saveAsFastq with original base qualities
- saveAsFastq sorted by read name
- saveAsFastq sorted by read name with original base qualities
2019-05-15 14:44:25 WARN  RDDBoundAlignmentRecordDataset:190 - Found 20 read names that don't occur exactly twice:
	1x:	20

Samples:
	simread:1:237728409:true
	simread:1:195211965:false
	simread:1:163841413:false
	simread:1:231911906:false
	simread:1:26472783:false
	simread:1:165341382:true
	simread:1:240344442:true
	simread:1:50683371:false
	simread:1:240997787:true
	simread:1:14397233:false
	simread:1:207027738:true
	simread:1:20101800:true
	simread:1:101556378:false
	simread:1:37577445:false
	simread:1:189606653:true
	simread:1:5469106:true
	simread:1:186794283:true
	simread:1:89554252:false
	simread:1:153978724:false
	simread:1:169801933:true
- saveAsFastq paired FASTQ
2019-05-15 14:44:26 WARN  RDDBoundAlignmentRecordDataset:190 - Found 20 read names that don't occur exactly twice:
	1x:	20

Samples:
	simread:1:237728409:true
	simread:1:195211965:false
	simread:1:163841413:false
	simread:1:231911906:false
	simread:1:26472783:false
	simread:1:165341382:true
	simread:1:240344442:true
	simread:1:50683371:false
	simread:1:240997787:true
	simread:1:14397233:false
	simread:1:207027738:true
	simread:1:20101800:true
	simread:1:101556378:false
	simread:1:37577445:false
	simread:1:189606653:true
	simread:1:5469106:true
	simread:1:186794283:true
	simread:1:89554252:false
	simread:1:153978724:false
	simread:1:169801933:true
- saveAsPairedFastq
2019-05-15 14:44:27 WARN  RDDBoundAlignmentRecordDataset:190 - Found 20 read names that don't occur exactly twice:
	1x:	20

Samples:
	simread:1:237728409:true
	simread:1:195211965:false
	simread:1:163841413:false
	simread:1:231911906:false
	simread:1:26472783:false
	simread:1:165341382:true
	simread:1:240344442:true
	simread:1:50683371:false
	simread:1:240997787:true
	simread:1:14397233:false
	simread:1:207027738:true
	simread:1:20101800:true
	simread:1:101556378:false
	simread:1:37577445:false
	simread:1:189606653:true
	simread:1:5469106:true
	simread:1:186794283:true
	simread:1:89554252:false
	simread:1:153978724:false
	simread:1:169801933:true
- saveAsPairedFastq as single files
- don't lose any reads when piping as SAM
2019-05-15 14:44:38 WARN  OutFormatterRunner:190 - Piped command List(sleep, 10) timed out after 5 seconds.
2019-05-15 14:44:38 WARN  OutFormatterRunner:190 - Piped command List(sleep, 10) timed out after 5 seconds.
- lose all records when a command times out
- lose no records without a timeout
2019-05-15 14:44:59 WARN  OutFormatterRunner:190 - Piped command List(python, /tmp/adamTestMvnEoU0t8M/spark-7df7a237-8b8c-42c9-8294-2be385d10899/userFiles-39189924-6b6f-4ae4-be4a-81585858e6ee/timeout.py) timed out after 5 seconds.
2019-05-15 14:44:59 WARN  OutFormatterRunner:190 - Piped command List(python, /tmp/adamTestMvnEoU0t8M/spark-7df7a237-8b8c-42c9-8294-2be385d10899/userFiles-39189924-6b6f-4ae4-be4a-81585858e6ee/timeout.py) timed out after 5 seconds.
- lose some records when a command times out
- don't lose any reads when piping as SAM using java pipe
- don't lose any reads when piping as BAM
- don't lose any reads when piping fastq to sam
- can properly set environment variables inside of a pipe
- read vcf from alignment record pipe !!! IGNORED !!!
- use broadcast join to pull down reads mapped to targets
- use broadcast join against to pull down reads mapped to targets
- use right outer broadcast join to pull down reads mapped to targets
- use right outer broadcast join against to pull down reads mapped to targets
- use shuffle join with feature spanning partitions
- use shuffle join to pull down reads mapped to targets
- use shuffle join with flankSize to pull down reads mapped close to targets
- use right outer shuffle join to pull down reads mapped to targets
- use left outer shuffle join to pull down reads mapped to targets
- use full outer shuffle join to pull down reads mapped to targets
- use shuffle join with group by to pull down reads mapped to targets
- use right outer shuffle join with group by to pull down reads mapped to targets
- cannot provide empty quality score bins
- cannot provide bins with a gap
- cannot provide overlapping bins
- binning quality scores in reads succeeds even if reads have no quality scores
- bin quality scores in reads
- union two read files together
- test k-mer counter
- test dataset based k-mer counter
- transform reads to contig genomic dataset
- transform reads to coverage genomic dataset
- transform reads to feature genomic dataset
- transform reads to fragment genomic dataset
- transform reads to genotype genomic dataset
loading /tmp/adamTestMvnEoU0t8M/TempSuite3181743542613393217.adam as parquet into RDD...
loading /tmp/adamTestMvnEoU0t8M/TempSuite7275930960354912014.adam as parquet into RDD...
- transform reads to variant genomic dataset
- cannot have a null processing step ID
- convert a processing description to htsjdk
- GenomicDataset.sort does not fail on unmapped reads
- GenomicDataset.sortLexicographically does not fail on unmapped reads
- left normalize indels
- running base recalibration with downsampling doesn't drop reads
- filter RDD bound alignments by MAPQ
- filter dataset bound alignments by MAPQ
- filter RDD bound unaligned alignments
- filter dataset bound unaligned alignments
- filter RDD bound unpaired alignments
- filter dataset bound unpaired alignments
- filter RDD bound duplicate alignments
- filter dataset bound duplicate alignments
- filter RDD bound alignments to primary alignments
- filter dataset bound alignments to primary alignments
- filter RDD bound alignments to read group
- filter dataset bound alignments to read group
- filter RDD bound alignments to read groups
- filter dataset bound alignments to read groups
- filter RDD bound alignments to sample
- filter dataset bound alignments to sample
- filter RDD bound alignments to samples
- filter dataset bound alignments to samples
- sort by read name
- transform dataset via java API
SingleReadBucketSuite:
- convert unmapped pair to fragment
- convert proper pair to fragment
- convert read pair to fragment with first of pair chimeric read
RecalibrationTableSuite:
- look up quality scores in table
InterleavedFastqInputFormatSuite:
- interleaved FASTQ hadoop reader: interleaved_fastq_sample1.ifq->interleaved_fastq_sample1.ifq.output
- interleaved FASTQ hadoop reader: interleaved_fastq_sample2.ifq->interleaved_fastq_sample2.ifq.output
- interleaved FASTQ hadoop reader: interleaved_fastq_sample3.ifq->interleaved_fastq_sample3.ifq.output
- interleaved FASTQ hadoop reader: interleaved_fastq_sample4.ifq->interleaved_fastq_sample4.ifq.output
- interleaved FASTQ hadoop reader: interleaved_fastq_sample5.ifq->interleaved_fastq_sample5.ifq.output
TreeRegionJoinSuite:
- run a join between data on a single contig
ReferenceRegionSuite:
- cannot create an empty predicate
- parse empty string throws IllegalArgumentException
- parse contigName only string into reference regions
- parse to end strings into reference regions
- parse string into reference regions
- contains(: ReferenceRegion)
- contains(: ReferencePosition)
- merge
- overlaps and covers
- overlapsBy and coversBy
- distance(: ReferenceRegion)
- distance(: ReferencePosition)
- unstrandedDistance
- subtract fails on non-overlapping and non-covering regions
- subtract
- create region from unmapped read fails
- create region from read with null alignment positions fails
- create stranded region from unmapped read fails
- create stranded region from read with null alignment positions fails
- create stranded region from read with null alignment strand fails
- create stranded region from read on forward strand
- create stranded region from read on reverse strand
- create region from mapped read contains read start and end
- validate that adjacent regions can be merged
- validate that non-adjacent regions cannot be merged
- validate that nearby regions can be merged
- validate that non-nearby regions cannot be merged
- compute convex hull of two sets
- region name is sanitized when creating region from read
- intersection fails on non-overlapping regions
- intersection fails when minOverlap is not met
- compute intersection
- overlap tests for oriented reference region
- check the width of a reference region
- make a reference region for a variant or genotype
- make a reference region for a variant or genotype starting at VCF 0
- uniformly pad a reference region
- uniformly pad a reference region into negative coordinate space, ensure non negative start
- unevenly pad a reference region
- unevenly pad a reference region into negative coordinate space, ensure non negative start
- can build an open ended reference region
- can build an open ended reference region with strand
- can build a reference region with an open start position
- can build a reference region with an open start position with strand
- can build a reference region that covers the entirety of a contig
- can build a reference region that covers the entirety of a contig with strand
- convert a genotype and then get the reference region
- create region from feature with null alignment positions fails
- create stranded region from feature with null alignment positions fails
- create stranded region from feature with null alignment strand fails
- create stranded region from feature on forward strand
- create stranded region from feature on reverse strand
AlignmentRecordConverterSuite:
- testing the fields in a converted ADAM Read
- converting a read with null quality is OK
- convert a read to fastq
- reverse complement reads when converting to fastq
- converting to fastq with unmapped reads where  read reverse complemented flag (Ox10) was NOT set
- converting to fastq with unmapped reads where reverse complemented flag (0x10) was set
- converting a fragment with no alignments should yield unaligned reads
- converting a fragment with alignments should restore the alignments
- read negative strand is propagated even when not mapped
CoverageDatasetSuite:
- correctly saves coverage
- can read a bed file to coverage
- correctly filters coverage with predicate
- keeps sample metadata
- can read a bed file with multiple samples to coverage
- correctly flatmaps coverage without aggregated bins
- correctly flatmaps coverage with aggregated bins
- collapses coverage records in one partition
- approximately collapses coverage records in multiple partitions
- transform coverage to contig rdd
- transform coverage to feature rdd
- transform coverage to fragment rdd
- transform coverage to read rdd
- transform coverage to genotype rdd
- transform coverage to variant rdd
- transform coverage to variant context rdd
- copy coverage rdd
- copy coverage dataset
- copy coverage rdd without sequence dictionary
- copy coverage dataset without sequence dictionary
- transform dataset via java API
RecalibratorSuite:
- don't replace quality if quality was null
- if no covariates, return alignment
- skip recalibration if base is below quality threshold
- recalibrate changed bases above quality threshold
GenotypeDatasetSuite:
- union two genotype genomic datasets together
- round trip to parquet
- round trip to partitioned parquet
- use broadcast join to pull down genotypes mapped to targets
- use right outer broadcast join to pull down genotypes mapped to targets
- use shuffle join to pull down genotypes mapped to targets
- use right outer shuffle join to pull down genotypes mapped to targets
- use left outer shuffle join to pull down genotypes mapped to targets
- use full outer shuffle join to pull down genotypes mapped to targets
- use shuffle join with group by to pull down genotypes mapped to targets
- use right outer shuffle join with group by to pull down genotypes mapped to targets
- convert back to variant contexts
- load parquet to sql, save, re-read from avro
- transform genotypes to contig genomic dataset
- transform genotypes to coverage genomic dataset
- transform genotypes to feature genomic dataset
- transform genotypes to fragment genomic dataset
- transform genotypes to read genomic dataset
- transform genotypes to variant genomic dataset
- transform genotypes to variant context genomic dataset
- loading genotypes then converting to variants yields same output as loading variants
- filter RDD bound genotypes to genotype filters passed
- filter dataset bound genotypes to genotype filters passed
- filter RDD bound genotypes by genotype quality
- filter dataset bound genotypes by genotype quality
- filter RDD bound genotypes by read depth
- filter dataset bound genotypes by read depth
- filter RDD bound genotypes by alternate read depth
- filter dataset bound genotypes by alternate read depth
- filter RDD bound genotypes by reference read depth
- filter dataset bound genotypes by reference read depth
- filter RDD bound genotypes by sample
- filter dataset bound genotypes by sample
- filter RDD bound genotypes by samples
- filter dataset bound genotypes by samples
- filter RDD bound no call genotypes
- filter dataset no call genotypes
- round trip gVCF END attribute without nested variant annotations rdd bound
- round trip gVCF END attribute without nested variant annotations dataset bound
- round trip gVCF END attribute with nested variant annotations rdd bound
- round trip gVCF END attribute with nested variant annotations dataset bound
- transform dataset via java API
FragmentDatasetSuite:
- don't lose any reads when piping interleaved fastq to sam
- don't lose any reads when piping tab5 to sam
- don't lose any reads when piping tab6 to sam
- use broadcast join to pull down fragments mapped to targets
- use right outer broadcast join to pull down fragments mapped to targets
- use shuffle join to pull down fragments mapped to targets
- use right outer shuffle join to pull down fragments mapped to targets
- use left outer shuffle join to pull down fragments mapped to targets
- use full outer shuffle join to pull down fragments mapped to targets
- use shuffle join with group by to pull down fragments mapped to targets
- use right outer shuffle join with group by to pull down fragments mapped to targets
- bin quality scores in fragments
- union two genomic datasets of fragments together
- load parquet to sql, save, re-read from avro
- transform fragments to contig genomic dataset
- transform fragments to coverage genomic dataset
- transform fragments to feature genomic dataset
- transform fragments to read genomic dataset
- transform fragments to genotype genomic dataset
- transform fragments to variant genomic dataset
- transform fragments to variant context genomic dataset
- paired read names with index sequences in read names can group into fragments
- interleaved paired read names with index sequences in read names can group into fragments
- interleaved paired read names with index sequences in read names as fragments
- transform dataset via java API
SingleFastqInputFormatSuite:
- FASTQ hadoop reader: fastq_sample1.fq->single_fastq_sample1.fq.output
- FASTQ hadoop reader: fastq_sample2.fq->single_fastq_sample2.fq.output
- FASTQ hadoop reader: fastq_sample3.fq->single_fastq_sample3.fq.output
- FASTQ hadoop reader: fastq_sample4.fq->single_fastq_sample4.fq.output
VariantContextDatasetSuite:
- load a gvcf with a missing info field set to .
- union two variant context genomic datasets together
- can write, then read in .vcf file
- can write as a single file via simple saveAsVcf method, then read in .vcf file
- can write as a single file via full saveAsVcf method, then read in .vcf file
- transform a vcf file with bad header
- read a vcf file with multi-allelic variants to split
- support VCFs with +Inf/-Inf float values
- support VCFs with `nan` instead of `NaN` float values
- don't lose any variants when piping as VCF
- pipe works with empty partitions
- don't lose any non-default VCF header lines or attributes when piping as VCF
- save a file sorted by contig index
- save a lexicographically sorted file
- save a multiallelic gvcf !!! IGNORED !!!
- test metadata
- save sharded bgzip vcf
- save bgzip vcf as single file
- can't save file with non-vcf extension
- transform variant contexts to contig genomic dataset
- transform variant contexts to coverage genomic dataset
- transform variant contexts to feature genomic dataset
- transform variant contexts to fragment genomic dataset
- transform variant contexts to read genomic dataset
- transform variant contexts to genotype genomic dataset
- transform variant contexts to variant genomic dataset
- save and reload from partitioned parquet
- transform dataset via java API
ConsensusSuite:
- test the insertion of a consensus insertion into a reference
- test the insertion of a consensus deletion into a reference
- inserting empty consensus returns the reference
AttributeUtilsSuite:
- parseTags returns a reasonable set of tagStrings
- parseTags works with NumericSequence tagType
- empty string is parsed as zero tagStrings
- incorrectly formatted tag throws an exception
- string tag with a ':' in it is correctly parsed
- oq string tag with many ':' in it is correctly parsed
- oq string tag with a ',' in it is correctly parsed
- if a tag is an array but doesn't define it's format, throw
MarkDuplicatesSuite:
- single read
- reads at different positions
- reads at the same position
- reads at the same position with clipping
- reads on reverse strand
- unmapped reads
- read pairs
- read pairs with fragments
- quality scores
- read pairs that cross chromosomes
- single fragment
- fragments at different positions
- fragments at the same position
- fragments at the same position with clipping
- fragments on reverse strand
- unmapped fragments
- read pairs as fragments
- read pairs with fragments as fragments
- chimeric fragments
- inverse pairs
- supplemental reads
TranscriptEffectConverterSuite:
- parse empty transcript effect
- parse empty transcript effect strict validation stringency
- parse invalid transcript effect
- parse invalid transcript effect strict validation stringency
- parse transcript effect
- parse empty list VCF ANN attribute
- parse empty list VCF ANN attribute strict validation stringency
- parse empty string VCF ANN attribute
- parse empty string VCF ANN attribute strict validation stringency
- parse invalid VCF ANN attribute
- parse invalid VCF ANN attribute strict validation stringency
- parse VCF ANN attribute with one transcript effect
- parse VCF ANN attribute with multiple transcript effects
- convert to transcript effect from null VCF ANN attribute in variant context
- convert to transcript effect from empty list VCF ANN attribute in variant context
- convert to transcript effect from empty list VCF ANN attribute in variant context strict validation stringency
- convert to transcript effect from empty string VCF ANN attribute in variant context
- convert to transcript effect from empty string VCF ANN attribute in variant context strict validation stringency
- convert to transcript effect from invalid VCF ANN attribute in variant context
- convert to transcript effect from invalid VCF ANN attribute in variant context strict validation stringency
2019-05-15 14:47:19 WARN  TranscriptEffectConverter$:190 - Could not convert VCF INFO reserved key ANN value to TranscriptEffect, caught java.lang.NumberFormatException: For input string: "not a number".
- convert to transcript effect from VCF ANN attribute with invalid number in variant context lenient validation stringency
2019-05-15 14:47:19 WARN  TranscriptEffectConverter$:190 - Could not convert VCF INFO reserved key ANN value to TranscriptEffect, caught java.lang.NumberFormatException: For input string: "not a number".
- convert to transcript effect from VCF ANN attribute with invalid fraction in variant context lenient validation stringency
- convert to transcript effect from VCF ANN attribute with invalid number in variant context strict validation stringency
- convert to transcript effect from VCF ANN attribute with invalid fraction in variant context strict validation stringency
- convert to transcript effect from VCF ANN attribute in variant context different alt allele
- convert to transcript effect from VCF ANN attribute in variant context same alt allele
- convert to transcript effect from VCF ANN attribute in variant context multiple effects same alt allele
- convert transcript effect to VCF ANN attribute value
- convert transcript effect with null fields to VCF ANN attribute value
2019-05-15 14:47:19 WARN  TranscriptEffectConverter$:190 - Incorrect fractional value ?/2, missing numerator
- convert transcript effect with incorrect fractional value to VCF ANN attribute value
IndelRealignmentTargetSuite:
- checking simple realignment target
- creating simple target from read with deletion
- creating simple target from read with insertion
- joining simple realignment targets on same chr
- joining simple realignment targets on different chr throws exception
- creating targets from three intersecting reads, same indel
- creating targets from three intersecting reads, two different indel
- creating targets from two disjoint reads
- creating targets for artificial reads: one-by-one
- creating targets for artificial reads: all-at-once (merged)
- creating indel targets for mason reads
- additional indel targets taken from consensus generator
NormalizationUtilsSuite:
- cannot move an indel left if there are no bases to it's left
- move a simple indel to farthest position left until bases run out
- move a simple indel to farthest position left, past length of indel
- cannot move a left normalized indel in a short tandem repeat
- move an indel in a short tandem repeat
- move an indel in a short tandem repeat of more than 2 bases, where shift is not an integer multiple of repeated sequence length
- moving a simple read with single deletion that cannot shift
- shift an indel left by 0 in a cigar
- shift an indel left by 1 in a cigar
- do not left align a complex read which is already left aligned
ReadGroupDictionarySuite:
- simple conversion to and from sam read group
- sample name must be set
- simple equality checks
- get samples from read group dictionary
- empty read group is empty
- merging a dictionary with itself should work
- round trip a record with all attributes set
NucleotideContigFragmentDatasetSuite:
- union two ncf genomic datasets together
- round trip a ncf to parquet
- round trip a ncf to partitioned parquet
- save fasta back as a single file
- generate sequence dict from fasta
- recover reference string from a single contig fragment
- recover trimmed reference string from a single contig fragment
- recover reference string from multiple contig fragments
- extract sequences based on the list of reference regions
- recover trimmed reference string from multiple contig fragments
- testing nondeterminism from reduce when recovering referencestring
- save single contig fragment as FASTA text file
- save single contig fragment with description as FASTA text file
- save single contig fragment with null fields as FASTA text file
- save single contig fragment with null fragment number as FASTA text file
- save single contig fragment with null number of fragments in contig as FASTA text file
- save multiple contig fragments from same contig as FASTA text file
- save multiple contig fragments with description from same contig as FASTA text file
- merge single contig fragment null fragment number
- merge single contig fragment number zero
- merge multiple contig fragments
- save as parquet and apply predicate pushdown
- load fasta sequences from GFF3 file
- transform contigs to coverage genomic dataset
- transform contigs to feature genomic dataset
- transform contigs to fragment genomic dataset
- transform contigs to read genomic dataset
- transform contigs to genotype genomic dataset
- transform contigs to variant genomic dataset
- transform contigs to variant context genomic dataset
RightOuterTreeRegionJoinSuite:
- Ensure same reference regions get passed together
- Overlapping reference regions
InnerShuffleRegionJoinSuite:
- Overlapping reference regions
- Multiple reference regions do not throw exception
FeatureDatasetSuite:
- round trip GTF format
- save GTF as GFF3 format
- save GTF as BED format
- save GTF as IntervalList format
- save GTF as NarrowPeak format
- save GFF3 as GTF format
- save GFF3 as BED format
- save GFF3 as IntervalList format
- save GFF3 as NarrowPeak format
- round trip GFF3 format
- ignore FASTA sequence in GFF3 file
- save BED as GTF format
- save BED as GFF3 format
- save BED as IntervalList format
- save BED as NarrowPeak format
- round trip BED6 format
- keeps sample metadata
- round trip BED12 format
- save to UCSC BED format
- save IntervalList as GTF format
- save IntervalList as GFF3 format
- save IntervalList as BED format
- save IntervalList as IntervalList format
- save IntervalList as NarrowPeak format
- round trip IntervalList format
- save NarrowPeak as GTF format
- save NarrowPeak as GFF3 format
- save NarrowPeak as BED format
- save NarrowPeak as IntervalList format
- save NarrowPeak as NarrowPeak format
- round trip NarrowPeak format
- sort by reference
- sort by reference and feature fields
- sort gene features by reference and gene structure
- sort transcript features by reference and gene structure
- sort exon features by reference and gene structure
- sort intron features by reference and gene structure
- correctly flatmaps CoverageDataset from FeatureDataset
- use broadcast join to pull down features mapped to targets
- use right outer broadcast join to pull down features mapped to targets
- use shuffle join to pull down features mapped to targets
- use right outer shuffle join to pull down features mapped to targets
- use left outer shuffle join to pull down features mapped to targets
- use full outer shuffle join to pull down features mapped to targets
- use shuffle join with group by to pull down features mapped to targets
- use right outer shuffle join with group by to pull down features mapped to targets
- union two feature rdds together
- obtain sequence dictionary contig lengths from header in IntervalList format
- don't lose any features when piping as BED format
- don't lose any features when piping as GTF format
- don't lose any features when piping as GFF3 format
- don't lose any features when piping as NarrowPeak format
- load parquet to sql, save, re-read from avro
- load partitioned parquet to sql, save, re-read from avro
- transform features to contig rdd
- transform features to coverage rdd
- transform features to fragment rdd
- transform features to read rdd
- transform features to genotype rdd
- transform features to variant rdd
- transform features to variant context rdd
- filter RDD bound features by feature type
- filter dataset bound features by feature type
- filter RDD bound features by feature types
- filter dataset bound features by feature types
- filter RDD bound features by gene
- filter dataset bound features by gene
- filter RDD bound features by genes
- filter dataset bound features by genes
- filter RDD bound features by transcript
- filter dataset bound features by transcript
- filter RDD bound features by transcripts
- filter dataset bound features by transcripts
- filter RDD bound features by exon
- filter dataset bound features by exon
- filter RDD bound features by exons
- filter dataset bound features by exons
- filter RDD bound features by score
- filter dataset bound features by score
- filter RDD bound features by parent
- filter dataset bound features by parent
- filter RDD bound features by parents
- filter dataset bound features by parents
- filter RDD bound features by attribute
- filter dataset bound features by attribute
- transform dataset via java API
AlphabetSuite:
- test size of a case-sensitive alphabet
- test apply of a case-sensitive alphabet
- test reverse complement of a case-sensitive alphabet
- test exact reverse complement of a case-sensitive alphabet
- test size of a case-insensitive alphabet
- test apply of a case-insensitive alphabet
- test reverse complement of a case-insensitive alphabet
- test exact reverse complement of a case-insensitive alphabet
- DNA alphabet
- map unknown bases to N
SortedGenomicDatasetSuite:
- testing that partition and sort provide correct outputs
- testing copartition maintains or adds sort
- testing that we don't drop any data on the right side even though it doesn't map to a partition on the left
- testing that sorted shuffleRegionJoin matches unsorted
- testing that sorted fullOuterShuffleRegionJoin matches unsorted
- testing that sorted rightOuterShuffleRegionJoin matches unsorted
- testing that sorted leftOuterShuffleRegionJoin matches unsorted
- testing that we can persist the sorted knowledge
VariantContextConverterSuite:
- Convert htsjdk site-only SNV to ADAM
- Convert somatic htsjdk site-only SNV to ADAM
- Convert htsjdk site-only CNV to ADAM
- Convert htsjdk SNV w/ genotypes w/ phase information to ADAM
- Convert htsjdk SNV with different variant filters to ADAM
- Convert htsjdk SNV with different genotype filters to ADAM
- Convert ADAM site-only SNV to htsjdk
- Convert ADAM SNV w/ genotypes to htsjdk
- Convert ADAM SNV w/ genotypes but bad SB to htsjdk with strict validation
2019-05-15 14:48:28 WARN  VariantContextConverter:2300 - Applying annotation extraction function <function2> to {"variant": {"referenceName": "1", "start": 0, "end": 1, "names": [], "splitFromMultiAllelic": false, "referenceAllele": "A", "alternateAllele": "T", "quality": null, "filtersApplied": null, "filtersPassed": null, "filtersFailed": [], "annotation": null}, "referenceName": null, "start": null, "end": null, "variantCallingAnnotations": {"filtersApplied": null, "filtersPassed": null, "filtersFailed": [], "downsampled": null, "baseQRankSum": null, "fisherStrandBiasPValue": 3.0, "rmsMapQ": 0.0, "mapq0Reads": 5, "mqRankSum": null, "readPositionRankSum": null, "genotypePriors": [], "genotypePosteriors": [], "vqslod": null, "culprit": null, "attributes": {}}, "sampleId": "NA12878", "sampleDescription": null, "processingDescription": null, "alleles": ["REF", "ALT"], "expectedAlleleDosage": null, "referenceReadDepth": null, "alternateReadDepth": null, "readDepth": null, "minReadDepth": null, "genotypeQuality": null, "genotypeLikelihoods": [], "nonReferenceLikelihoods": [], "strandBiasComponents": [0, 2], "splitFromMultiAllelic": false, "phased": false, "phaseSetId": null, "phaseQuality": null} failed with java.lang.IllegalArgumentException: requirement failed: Illegal strand bias components length. Must be empty or 4. In:
{"variant": {"referenceName": "1", "start": 0, "end": 1, "names": [], "splitFromMultiAllelic": false, "referenceAllele": "A", "alternateAllele": "T", "quality": null, "filtersApplied": null, "filtersPassed": null, "filtersFailed": [], "annotation": null}, "referenceName": null, "start": null, "end": null, "variantCallingAnnotations": {"filtersApplied": null, "filtersPassed": null, "filtersFailed": [], "downsampled": null, "baseQRankSum": null, "fisherStrandBiasPValue": 3.0, "rmsMapQ": 0.0, "mapq0Reads": 5, "mqRankSum": null, "readPositionRankSum": null, "genotypePriors": [], "genotypePosteriors": [], "vqslod": null, "culprit": null, "attributes": {}}, "sampleId": "NA12878", "sampleDescription": null, "processingDescription": null, "alleles": ["REF", "ALT"], "expectedAlleleDosage": null, "referenceReadDepth": null, "alternateReadDepth": null, "readDepth": null, "minReadDepth": null, "genotypeQuality": null, "genotypeLikelihoods": [], "nonReferenceLikelihoods": [], "strandBiasComponents": [0, 2], "splitFromMultiAllelic": false, "phased": false, "phaseSetId": null, "phaseQuality": null}.
- Convert ADAM SNV w/ genotypes but bad SB to htsjdk with lenient validation
- Convert htsjdk multi-allelic sites-only SNVs to ADAM
- Convert htsjdk multi-allelic SNVs to ADAM and back to htsjdk
- Convert gVCF reference records to ADAM
- Convert htsjdk variant context with no IDs to ADAM
- Convert htsjdk variant context with one ID to ADAM
- Convert htsjdk variant context with multiple IDs to ADAM
- Convert ADAM variant context with no names to htsjdk
- Convert ADAM variant context with one name to htsjdk
- Convert ADAM variant context with multiple names to htsjdk
- Convert ADAM variant context with null filters applied to htsjdk
- Convert ADAM variant context with no filters applied to htsjdk
- Convert ADAM variant context with passing filters to htsjdk
- Convert ADAM variant context with failing filters to htsjdk
- no phasing set going htsjdk->adam
- phased but no phase set info going htsjdk->adam
- set phase set and extract going htsjdk->adam
- no allelic depth going htsjdk->adam
- set allelic depth going htsjdk->adam
- no gt read depth going htsjdk->adam
- extract gt read depth going htsjdk->adam
- no min gt read depth going htsjdk->adam
- extract min gt read depth going htsjdk->adam
- no genotype quality going htsjdk->adam
- extract genotype quality going htsjdk->adam
- no phred likelihood going htsjdk->adam
- extract phred likelihoods going htsjdk->adam
- no strand bias info going htsjdk->adam
- extract strand bias info going htsjdk->adam
- no filters going htsjdk->adam
- filters passed going htsjdk->adam
- extract single filter going htsjdk->adam
- extract multiple filters going htsjdk->adam
- no fisher strand bias going htsjdk->adam
- extract fisher strand bias going htsjdk->adam
- no rms mapping quality going htsjdk->adam
- extract rms mapping quality going htsjdk->adam
- no mq0 going htsjdk->adam
- extract mq0 going htsjdk->adam
- no gt read depth going adam->htsjdk
- extract gt read depth going adam->htsjdk
- throw iae if missing one component of gt read depth going adam->htsjdk
- no depth going adam->htsjdk
- extract depth going adam->htsjdk
- no min depth going adam->htsjdk
- extract min depth going adam->htsjdk
- no quality going adam->htsjdk
- extract quality going adam->htsjdk
- no genotype likelihoods going adam->htsjdk
- extract genotype likelihoods going adam->htsjdk
- no strand bias going adam->htsjdk
- malformed strand bias going adam->htsjdk
- extract strand bias going adam->htsjdk
- no phasing info going adam->htsjdk
- unphased going adam->htsjdk
- phased but no ps/pq going adam->htsjdk
- phased but no pq going adam->htsjdk
- phased but no ps going adam->htsjdk
- phased going adam->htsjdk
- no filter info going adam->htsjdk
- if filters applied, must set passed/failed going adam->htsjdk
- filters passed going adam->htsjdk
- if filters failed, must set filters failed going adam->htsjdk
- single filter failed going adam->htsjdk
- multiple filters failed going adam->htsjdk
- no fisher strand bias going adam->htsjdk
- extract fisher strand bias going adam->htsjdk
- no rms mapping quality going adam->htsjdk
- extract rms mapping quality going adam->htsjdk
- no mapping quality 0 reads going adam->htsjdk
- extract mapping quality 0 reads going adam->htsjdk
- no names set going htsjdk->adam
- single name set going htsjdk->adam
- multiple names set going htsjdk->adam
- no quality going htsjdk->adam
- quality set going htsjdk->adam
- no filters applied going htsjdk->adam
- filters applied and passed going htsjdk->adam
- single filter applied and failed going htsjdk->adam
- multiple filters applied and failed going htsjdk->adam
- no names set adam->htsjdk
- set a single name adam->htsjdk
- set multiple names adam->htsjdk
- no qual set adam->htsjdk
- qual is set adam->htsjdk
- no filters applied adam->htsjdk
- null filters applied adam->htsjdk
- filters passed adam->htsjdk
- if filter failed, must have filters adam->htsjdk
- single filter failed adam->htsjdk
- multiple filters failed adam->htsjdk
- no ancestral allele set going htsjdk->adam
- ancestral allele set going htsjdk->adam
- no dbsnp membership set going htsjdk->adam
- dbsnp membership set going htsjdk->adam
- no hapmap2 membership set going htsjdk->adam
- hapmap2 membership set going htsjdk->adam
- no hapmap3 membership set going htsjdk->adam
- hapmap3 membership set going htsjdk->adam
- no validated set going htsjdk->adam
- validated set going htsjdk->adam
- no 1000G membership set going htsjdk->adam
- 1000G membership set going htsjdk->adam
- not somatic going htsjdk->adam
- somatic going htsjdk->adam
- no allele count going htsjdk->adam
- single allele count going htsjdk->adam
- multiple allele counts going htsjdk->adam
- no allele frequency going htsjdk->adam
- single allele frequency going htsjdk->adam
- single allele frequency is +Inf going htsjdk->adam
- single allele frequency is -Inf going htsjdk->adam
- multiple allele frequencies going htsjdk->adam
- no CIGAR going htsjdk->adam
- single CIGAR going htsjdk->adam
- multiple CIGARs going htsjdk->adam
- no read depth going htsjdk->adam
- single read depth going htsjdk->adam
- multiple read depths going htsjdk->adam
- no forward read depth going htsjdk->adam
- single forward read depth going htsjdk->adam
- multiple forward read depths going htsjdk->adam
- no reverse read depth going htsjdk->adam
- single reverse read depth going htsjdk->adam
- multiple reverse read depths going htsjdk->adam
- no ancestral allele set adam->htsjdk
- ancestral allele set adam->htsjdk
- no dbsnp membership set adam->htsjdk
- dbsnp membership set adam->htsjdk
- no hapmap2 membership set adam->htsjdk
- hapmap2 membership set adam->htsjdk
- no hapmap3 membership set adam->htsjdk
- hapmap3 membership set adam->htsjdk
- no validated set adam->htsjdk
- validated set adam->htsjdk
- no 1000G membership set adam->htsjdk
- 1000G membership set adam->htsjdk
- no allele count set adam->htsjdk
- allele count set adam->htsjdk
- no allele frequency set adam->htsjdk
- allele frequency set adam->htsjdk
- no cigar set adam->htsjdk
- cigar set adam->htsjdk
- no read depth set adam->htsjdk
- read depth set adam->htsjdk
- read depth without reference read depth
- reference read depth without read depth
- no forward read depth set adam->htsjdk
- forward read depth set adam->htsjdk
- reference forward read depth without forward read depth
- forward read depth without reference forward read depth
- no reverse read depth set adam->htsjdk
- reverse read depth set adam->htsjdk
- reference reverse read depth without reverse read depth
- reverse read depth without reference reverse read depth
- VCF INFO attribute Number=0 Type=Flag adam->htsjdk
- VCF INFO attribute Number=4 Type=Flag adam->htsjdk unsupported, strict !!! IGNORED !!!
- VCF INFO attribute Number=1 Type=Integer adam->htsjdk
- VCF INFO attribute Number=4 Type=Integer adam->htsjdk
- VCF INFO attribute Number=A Type=Integer adam->htsjdk
- VCF INFO attribute Number=R Type=Integer adam->htsjdk
- VCF INFO attribute Number=R Type=String adam->htsjdk
- VCF INFO attribute Number=G Type=String adam->htsjdk not supported
- VCF INFO attribute Number=0 Type=Flag htsjdk->adam
- VCF INFO attribute Number=1 Type=Integer htsjdk->adam
- VCF INFO attribute Number=4 Type=Integer htsjdk->adam
- VCF INFO attribute Number=4 Type=Float htsjdk->adam
- VCF INFO attribute Number=A Type=Integer htsjdk->adam
- VCF INFO attribute Number=R Type=Integer htsjdk->adam
- VCF INFO attribute Number=R Type=String htsjdk->adam
- VCF INFO attribute Number=G Type=String htsjdk->adam not supported
- VCF FORMAT attribute Number=0 Type=Flag adam->htsjdk not supported
- VCF FORMAT attribute Number=1 Type=Integer adam->htsjdk
- VCF FORMAT attribute Number=4 Type=Integer adam->htsjdk
- VCF FORMAT attribute Number=A Type=Integer adam->htsjdk
- VCF FORMAT attribute Number=R Type=Integer adam->htsjdk
- VCF FORMAT attribute Number=R Type=String adam->htsjdk
- VCF FORMAT attribute Number=0 Type=Flag htsjdk->adam is not supported
- VCF FORMAT attribute Number=1 Type=Integer htsjdk->adam
- VCF FORMAT attribute Number=4 Type=Integer htsjdk->adam
- VCF FORMAT attribute Number=4 Type=Float htsjdk->adam
- VCF FORMAT attribute Number=A Type=Integer htsjdk->adam
- VCF FORMAT attribute Number=R Type=Integer htsjdk->adam
- VCF FORMAT attribute Number=R Type=String htsjdk->adam
- VCF FORMAT attribute Number=G Type=String htsjdk->adam
- respect end position for symbolic alts
FastqRecordConverterSuite:
- test read name suffix and index of pair must match
- test parseReadInFastq, read suffix removal
- test parseReadInFastq, read metadata removal
- test parseReadInFastq, read quality shorter than read length, padded with B
- test parseReadInFastq, read quality longer than read length 
- test parseReadInFastq, no read quality
- testing FastqRecordConverter.convertPair with valid input
- testing FastqRecordConverter.convertPair with 7-line invalid input
- testing FastqRecordConverter.convertPair with invalid input: first read length and qual don't match
- testing FastqRecordConverter.convertPair with invalid input: second read length and qual don't match
- testing FastqRecordConverter.convertFragment with valid input
- testing FastqRecordConverter.convertFragment with another valid input having /1, /2 suffixes
- testing FastqRecordConverter.convertFragment with invalid input: different read names
- testing FastqRecordConverter.convertRead with valid input
- testing FastqRecordConverter.convertRead with valid input: setFirstOfPair set to true
- testing FastqRecordConverter.convertRead with valid input: setSecondOfPair set to true
- testing FastqRecordConverter.convertRead with valid input: setFirstOfPair and setSecondOfPair both true
- testing FastqRecordConverter.convertRead with valid input, no qual, strict
- testing FastqRecordConverter.convertRead with valid input, no qual, not strict
AttributeSuite:
- test SAMTagAndValue parsing
- Attributes can be correctly re-encoded as text SAM tags
GFF3HeaderWriterSuite:
- write gff3 header pragma
BinQualitiesSuite:
- make a quality score bin
- can't have a quality score bin with negative score
- can't have a quality score bin with high score below low
- can't have a quality score bin with high score above 255
- can't have a quality score bin with score outside
- make a quality score bin from a string
- quality score bin must have exactly 3 elements
- quality score bin must be integers
- must define at least one bin
- build multiple bins
- rewrite quality scores for a read
- rewriting quality scores fails if bins overlap
- rewriting quality scores fails if base is out of bounds
- skip read if qualities are null
- rewrite a read
IndexedFastaFileSuite:
- correctly generates sequence dictionary from .dict file
- correctly gets sequence
- fails when fai index is not provided
2019-05-15 14:48:29 WARN  IndexedFastaFile:190 - Caught exception java.lang.NullPointerException when loading FASTA sequence dictionary. Using empty dictionary instead.
- passes when dict is not provided and ValidationStringency = LENIENT
SAMRecordConverterSuite:
- testing the fields in an alignmentRecord obtained from a mapped samRecord conversion
- testing the fields in an alignmentRecord obtained from an unmapped samRecord conversion
- '*' quality gets nulled out
- don't keep denormalized fields
ADAMContextSuite:
- ctr is accessible
- load from an empty directory
- sc.loadParquet should not fail on unmapped reads
- sc.loadParquet should not load a file without a type specified
- can read a small .SAM file
- can read a small .SAM file with a bad header with lenient validation
- loading a sam file with a bad header and strict stringency should fail
- can read a small .CRAM file
- can read a small .SAM with all attribute tag types
- can filter a .SAM file based on quality
- Can convert to phred
- Can convert from phred
- Can read a .gtf file
- Can read a .bed file
- Can read a BED 12 file
- Can read a .narrowPeak file
- Can read a .interval_list file
2019-05-15 14:48:32 WARN  VariantContextConverter:1662 - Saw invalid info field java.lang.IllegalArgumentException: Multivalued flags are not supported for INFO lines: INFO=<ID=ABADFLAG,Number=.,Type=Flag,Description="A no good, very bad flag.">. Ignoring...
2019-05-15 14:48:32 WARN  VariantContextConverter:2169 - Generating field extractor from header line INFO=<ID=ABADFLAG,Number=.,Type=Flag,Description="A no good, very bad flag."> failed: java.lang.IllegalArgumentException: Multivalue flags are not supported for INFO lines: INFO=<ID=ABADFLAG,Number=.,Type=Flag,Description="A no good, very bad flag.">
- can read a small .vcf file with a validation issue
- can read a small .vcf file
2019-05-15 14:48:32 WARN  VCFInputFormat:218 - file:/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/target/2.11.12/test-classes/test.vcf.gz is not splittable, consider using block-compressed gzip (BGZF)
- can read a gzipped .vcf file
- can read a vcf file with an empty alt
- can read a BGZF gzipped .vcf file with .gz file extension
- can read a BGZF gzipped .vcf file with .bgz file extension
- can read a vcf file with a projection
- can read an uncompressed BCFv2.2 file !!! IGNORED !!!
- can read a BGZF compressed BCFv2.2 file !!! IGNORED !!!
- loadIndexedVcf with 1 ReferenceRegion
- loadIndexedVcf with multiple ReferenceRegions
- load block compressed interleaved fastq
- import records from interleaved FASTQ: 1
- import records from interleaved FASTQ: 2
- import records from interleaved FASTQ: 3
- import records from interleaved FASTQ: 4
- import block compressed single fastq
- import records from single ended FASTQ: 1
- import records from single ended FASTQ: 2
- import records from single ended FASTQ: 3
- import records from single ended FASTQ: 4
- filter on load using the filter2 API
- saveAsParquet with file path
- saveAsParquet with file path, block size, page size
- saveAsParquet with save args
- read a HLA fasta from GRCh38
- read a gzipped fasta file
- loadIndexedBam with 1 ReferenceRegion
- loadIndexedBam with multiple ReferenceRegions
- loadIndexedBam with multiple ReferenceRegions and indexed bams
- loadIndexedBam with multiple ReferenceRegions and a directory of indexed bams
- loadIndexedBam should throw exception without an index file
- loadIndexedBam should work with indexed file with index naming format <filename>.bai
- loadIndexedBam glob should throw exception without an index file
- loadBam with a glob
- loadBam with a directory
- load vcf with a glob
- load vcf from a directory
- load gvcf which contains a multi-allelic row from a directory
- load and save gvcf which contains rows without likelihoods
- parse annotations for multi-allelic rows
- load parquet with globs
- bad glob should fail
- empty directory should fail
- can read a SnpEff-annotated .vcf file
- loadAlignments should not fail on single-end and paired-end fastq reads
- load queryname sorted sam as fragments
- load query grouped sam as fragments
- load paired fastq
- load paired fastq without cache
- load paired fastq as fragments
- load paired fastq as fragments without cache
- load HTSJDK sequence dictionary
- load Bedtools .genome file as sequence dictionary
- load Bedtools .genome.txt file as sequence dictionary
- load UCSC Genome Browser chromInfo.txt file as sequence dictionary
- load unrecognized file extension as sequence dictionary fails
- load BED features with Bedtools .genome file as sequence dictionary
- load BED features with Bedtools .genome file as sequence dictionary, no matching features
- convert program record
- load program record from sam file
CycleCovariateSuite:
- compute covariates for an unpaired read on the negative strand
- compute covariates for a first-of-pair read on the negative strand
- compute covariates for a second-of-pair read on the negative strand
- compute covariates for an unpaired read on the positive strand
- compute covariates for a first-of-pair read on the positive strand
- compute covariates for a second-of-pair read on the positive strand
ConsensusGeneratorFromKnownsSuite:
- no consensuses for empty target
- no consensuses for reads that don't overlap a target
- return a consensus for read overlapping a single target
RichCigarSuite:
- moving 2 bp from a deletion to a match operator
- moving 2 bp from a insertion to a match operator
- moving 1 base in a two element cigar
- move to start of read
- process right clipped cigar
- process left clipped cigar
- process cigar clipped on both ends
MDTaggingSuite:
- test adding MDTags over boundary
- test adding MDTags; reads span full contig
- test adding MDTags; reads start inside first fragment
- test adding MDTags; reads end inside last fragment
- test adding MDTags; reads start inside first fragment and end inside last fragment
- test adding MDTags; reads start and end in middle fragements
2019-05-15 14:48:52 WARN  BlockManager:66 - Putting block rdd_5_3 failed due to exception java.lang.Exception: Contig chr2 not found in reference map with keys: chr1.
2019-05-15 14:48:52 WARN  BlockManager:66 - Block rdd_5_3 could not be removed as it was not found on disk or in memory
2019-05-15 14:48:52 ERROR Executor:91 - Exception in task 3.0 in stage 2.0 (TID 11)
java.lang.Exception: Contig chr2 not found in reference map with keys: chr1
	at org.bdgenomics.adam.util.ReferenceContigMap$$anonfun$extract$1.apply(ReferenceContigMap.scala:63)
	at org.bdgenomics.adam.util.ReferenceContigMap$$anonfun$extract$1.apply(ReferenceContigMap.scala:63)
	at scala.collection.MapLike$class.getOrElse(MapLike.scala:128)
	at scala.collection.AbstractMap.getOrElse(Map.scala:59)
	at org.bdgenomics.adam.util.ReferenceContigMap.extract(ReferenceContigMap.scala:61)
	at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1$$anonfun$apply$2.apply(MDTagging.scala:76)
	at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1$$anonfun$apply$2.apply(MDTagging.scala:71)
	at scala.Option$WithFilter.map(Option.scala:207)
	at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1.apply(MDTagging.scala:71)
	at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1.apply(MDTagging.scala:69)
	at scala.collection.Iterator$$anon$11.next(Iterator.scala:410)
	at org.apache.spark.storage.memory.MemoryStore.putIterator(MemoryStore.scala:222)
	at org.apache.spark.storage.memory.MemoryStore.putIteratorAsValues(MemoryStore.scala:299)
	at org.apache.spark.storage.BlockManager$$anonfun$doPutIterator$1.apply(BlockManager.scala:1165)
	at org.apache.spark.storage.BlockManager$$anonfun$doPutIterator$1.apply(BlockManager.scala:1156)
	at org.apache.spark.storage.BlockManager.doPut(BlockManager.scala:1091)
	at org.apache.spark.storage.BlockManager.doPutIterator(BlockManager.scala:1156)
	at org.apache.spark.storage.BlockManager.getOrElseUpdate(BlockManager.scala:882)
	at org.apache.spark.rdd.RDD.getOrCompute(RDD.scala:335)
	at org.apache.spark.rdd.RDD.iterator(RDD.scala:286)
	at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90)
	at org.apache.spark.scheduler.Task.run(Task.scala:121)
	at org.apache.spark.executor.Executor$TaskRunner$$anonfun$10.apply(Executor.scala:408)
	at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1360)
	at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:414)
	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
	at java.lang.Thread.run(Thread.java:748)
2019-05-15 14:48:52 WARN  TaskSetManager:66 - Lost task 3.0 in stage 2.0 (TID 11, localhost, executor driver): java.lang.Exception: Contig chr2 not found in reference map with keys: chr1
	at org.bdgenomics.adam.util.ReferenceContigMap$$anonfun$extract$1.apply(ReferenceContigMap.scala:63)
	at org.bdgenomics.adam.util.ReferenceContigMap$$anonfun$extract$1.apply(ReferenceContigMap.scala:63)
	at scala.collection.MapLike$class.getOrElse(MapLike.scala:128)
	at scala.collection.AbstractMap.getOrElse(Map.scala:59)
	at org.bdgenomics.adam.util.ReferenceContigMap.extract(ReferenceContigMap.scala:61)
	at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1$$anonfun$apply$2.apply(MDTagging.scala:76)
	at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1$$anonfun$apply$2.apply(MDTagging.scala:71)
	at scala.Option$WithFilter.map(Option.scala:207)
	at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1.apply(MDTagging.scala:71)
	at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1.apply(MDTagging.scala:69)
	at scala.collection.Iterator$$anon$11.next(Iterator.scala:410)
	at org.apache.spark.storage.memory.MemoryStore.putIterator(MemoryStore.scala:222)
	at org.apache.spark.storage.memory.MemoryStore.putIteratorAsValues(MemoryStore.scala:299)
	at org.apache.spark.storage.BlockManager$$anonfun$doPutIterator$1.apply(BlockManager.scala:1165)
	at org.apache.spark.storage.BlockManager$$anonfun$doPutIterator$1.apply(BlockManager.scala:1156)
	at org.apache.spark.storage.BlockManager.doPut(BlockManager.scala:1091)
	at org.apache.spark.storage.BlockManager.doPutIterator(BlockManager.scala:1156)
	at org.apache.spark.storage.BlockManager.getOrElseUpdate(BlockManager.scala:882)
	at org.apache.spark.rdd.RDD.getOrCompute(RDD.scala:335)
	at org.apache.spark.rdd.RDD.iterator(RDD.scala:286)
	at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90)
	at org.apache.spark.scheduler.Task.run(Task.scala:121)
	at org.apache.spark.executor.Executor$TaskRunner$$anonfun$10.apply(Executor.scala:408)
	at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1360)
	at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:414)
	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
	at java.lang.Thread.run(Thread.java:748)

2019-05-15 14:48:52 ERROR TaskSetManager:70 - Task 3 in stage 2.0 failed 1 times; aborting job
- try realigning a read on a missing contig, stringency == STRICT
2019-05-15 14:48:52 WARN  MDTagging:190 - Caught exception when processing read chr2: java.lang.Exception: Contig chr2 not found in reference map with keys: chr1
- try realigning a read on a missing contig, stringency == LENIENT
FileExtensionsSuite:
- ends in gzip extension
- is a vcf extension
PhredUtilsSuite:
- convert low phred score to log and back
- convert high phred score to log and back
- convert overflowing phred score to log and back and clip
- convert negative zero log probability to phred and clip
- round trip log probabilities
SmithWatermanSuite:
- gather max position from simple scoring matrix
- gather max position from irregular scoring matrix
- gather max position from irregular scoring matrix with deletions
- score simple alignment with constant gap
- score irregular scoring matrix
- score irregular scoring matrix with indel
- can unroll cigars correctly
- execute simple trackback
- execute trackback with indel
- run end to end smith waterman for simple reads
- run end to end smith waterman for short sequences with indel
- run end to end smith waterman for longer sequences with snp
- run end to end smith waterman for longer sequences with short indel
- run end to end smith waterman for shorter sequence in longer sequence
- run end to end smith waterman for shorter sequence in longer sequence, with indel
- smithWaterman - simple alignment
FastaConverterSuite:
- find contig index
- convert a single record without naming information
- convert a single record with naming information
- convert single fasta sequence
- convert fasta with multiple sequences
- convert fasta with multiple sequences; short fragment
- convert reference fasta file
MdTagSuite:
- null md tag
- zero length md tag
- md tag with non-digit initial value
- md tag invalid base
- md tag, pure insertion
- md tag, pure insertion, test 2
- md tag pure insertion equality
- md tag equality and hashcode
- valid md tags
- get start of read with no mismatches or deletions
- get start of read with no mismatches, but with a deletion at the start
- get start of read with mismatches at the start
- get end of read with no mismatches or deletions
- check that mdtag and rich record return same end
- get end of read with no mismatches, but a deletion at end
- CIGAR with N operator
- CIGAR with multiple N operators
- CIGAR with P operators
- Get correct matches for mdtag with insertion
- Get correct matches for mdtag with mismatches and insertion
- Get correct matches for mdtag with insertion between mismatches
- Get correct matches for mdtag with intron between mismatches
- Get correct matches for mdtag with intron and deletion between mismatches
- Throw exception when number of deleted bases in mdtag disagrees with CIGAR
- Get correct matches for mdtag with mismatch, insertion and deletion
- Get correct matches for mdtag with mismatches, insertion and deletion
- Get correct matches for MDTag with mismatches and deletions
- Get correct matches base from MDTag and CIGAR with N
- get end of read with mismatches and a deletion at end
- get correct string out of mdtag with no mismatches
- get correct string out of mdtag with mismatches at start
- get correct string out of mdtag with deletion at end
- get correct string out of mdtag with mismatches at end
- get correct string out of complex mdtag
- check complex mdtag
- get gapped reference
- move a cigar alignment by two for a read
- rewrite alignment to all matches
- rewrite alignment to two mismatches followed by all matches
- rewrite alignment to include a deletion but otherwise all matches
- rewrite alignment to include an insertion at the start of the read but otherwise all matches
- create new md tag from read vs. reference, perfect match
- create new md tag from read vs. reference, perfect alignment match, 1 mismatch
- create new md tag from read vs. reference, alignment with deletion
- create new md tag from read vs. reference, alignment with insert
- handle '=' and 'X' operators
- CIGAR/MD tag mismatch should cause errors
GenomicDatasetSuite:
- processing a command that is the spark root directory should return an absolute path
- processing a command that is just a single word should do nothing
- processing a command should handle arguments that include spaces
- processing a command that is a single substitution should succeed
- processing a command that is multiple words should split the string
- process a command that is multiple words with a replacement
- process a command that is multiple words with multiple replacements
ParallelFileMergerSuite:
- cannot write both empty gzip block and cram eof
- buffer size must be non-negative
- get the size of several files
- block size must be positive and non-zero when trying to merge files
- must provide files to merge
- if two files are both below the block size, they should merge into one shard
- merge two files where one is greater than the block size
- merge a sharded sam file
- merge a sharded bam file
- merge a sharded cram file
- can't turn a negative index into a path
- generate a path from an index
IndelTableSuite:
- check for indels in a region with known indels
- check for indels in a contig that doesn't exist
- check for indels in a region without known indels
- build indel table from rdd of variants
SnpTableSuite:
- create an empty snp table
- create a snp table from variants on multiple contigs
- create a snp table from a larger set of variants
- perform lookups on multi-contig snp table
- perform lookups on larger snp table
RealignIndelsSuite:
- map reads to targets
- checking mapping to targets for artificial reads
- checking alternative consensus for artificial reads
- checking extraction of reference from reads
- checking realigned reads for artificial input
- checking realigned reads for artificial input with reference file
- checking realigned reads for artificial input using knowns
- checking realigned reads for artificial input using knowns and reads
- skip realigning reads if target is highly covered
- skip realignment if target is an insufficient LOD improvement
- realign reads to an insertion
- test mismatch quality scoring
- test mismatch quality scoring for no mismatches
- test mismatch quality scoring for offset
- test mismatch quality scoring with early exit
- test mismatch quality scoring after unpacking read
- we shouldn't try to realign a region with no target
- we shouldn't try to realign reads with no indel evidence
- test OP and OC tags
- realign a read with an insertion that goes off the end of the read
- if realigning a target doesn't improve the LOD, don't drop reads
- extract seq/qual from a read with no clipped bases
- extract seq/qual from a read with clipped bases at start
- extract seq/qual from a read with clipped bases at end
- if unclip is selected, don't drop base when extracting from a read with clipped bases
- get cigar and coordinates for read that spans indel, no clipped bases
- get cigar and coordinates for read that spans deletion, clipped bases at start
- get cigar and coordinates for read that falls wholly before insertion
- get cigar and coordinates for read that falls wholly after insertion
- get cigar and coordinates for read that falls wholly after deletion
- get cigar and coordinates for read that partially spans insertion, no clipped bases
- get cigar and coordinates for read that partially spans insertion, clipped bases at end
- get cigar and coordinates for read that partially spans insertion, clipped bases both ends
BaseQualityRecalibrationSuite:
- BQSR Test Input #1 w/ VCF Sites without caching
- BQSR Test Input #1 w/ VCF Sites with caching
- BQSR Test Input #1 w/ VCF Sites with serialized caching
DinucCovariateSuite:
- computing dinucleotide pairs for a single base sequence should return (N,N)
- compute dinucleotide pairs for a string of all valid bases
- compute dinucleotide pairs for a string with an N
- compute covariates for a read on the negative strand
- compute covariates for a read on the positive strand
SequenceDictionarySuite:
- Convert from sam sequence record and back
- Convert from SAM sequence dictionary file (with extra fields)
- merge into existing dictionary
- Convert from SAM sequence dictionary and back
- Can retrieve sequence by name
- SequenceDictionary's with same single element are equal
- SequenceDictionary's with same two elements are equals
- SequenceDictionary's with different elements are unequal
- SequenceDictionaries with same elements in different order are compatible
- isCompatible tests equality on overlap
- The addition + works correctly
- The append operation ++ works correctly
- ContainsRefName works correctly for different string types
- Apply on name works correctly for different String types
- convert from sam sequence record and back
- convert from sam sequence dictionary and back
- conversion to sam sequence dictionary has correct sort order
- load sequence dictionary from VCF file
- empty sequence dictionary must be empty
- test filter to reference name
- test filter to reference names
- test filter to reference name by function
GenomicPositionPartitionerSuite:
- partitions the UNMAPPED ReferencePosition into the top partition
- if we do not have a contig for a record, we throw an IAE
- partitioning into N pieces on M total sequence length, where N > M, results in M partitions
- correctly partitions a single dummy sequence into two pieces
- correctly counts cumulative lengths
- correctly partitions positions across two dummy sequences
- test that we can range partition ADAMRecords
- test that we can range partition ADAMRecords indexed by sample
- test that simple partitioning works okay on a reasonable set of ADAMRecords
- test indexed ReferencePosition partitioning works on a set of indexed ADAMRecords
CoverageSuite:
- Convert to coverage from valid Feature
- Convert to coverage from valid Feature with sampleId
- Convert to coverage from Feature with null/empty contigName fails with correct error
- Convert to coverage from Feature with no start/end position fails with correct error
- Convert to coverage from Feature with no score fails with correct error
InnerTreeRegionJoinSuite:
- Ensure same reference regions get passed together
- Overlapping reference regions
- Multiple reference regions do not throw exception
RichAlignmentRecordSuite:
- Unclipped Start
- Unclipped End
- tags contains optional fields
- read overlap unmapped read
- read overlap reference position
- read overlap same position different contig
VariantDatasetSuite:
- union two variant genomic datasets together
- round trip to parquet
- save and reload from partitioned parquet
- use broadcast join to pull down variants mapped to targets
- use right outer broadcast join to pull down variants mapped to targets
- use shuffle join to pull down variants mapped to targets
- use right outer shuffle join to pull down variants mapped to targets
- use left outer shuffle join to pull down variants mapped to targets
- use full outer shuffle join to pull down variants mapped to targets
- use shuffle join with group by to pull down variants mapped to targets
- use right outer shuffle join with group by to pull down variants mapped to targets
- convert back to variant contexts
- load parquet to sql, save, re-read from avro
- transform variants to contig genomic dataset
- transform variants to coverage genomic dataset
- transform variants to feature genomic dataset
- transform variants to fragment genomic dataset
- transform variants to read genomic dataset
- transform variants to genotype genomic dataset
- transform variants to variant context genomic dataset
- filter RDD bound variants to filters passed
- filter dataset bound variants to filters passed
- filter RDD bound variants by quality
- filter dataset bound variants by quality
- filter RDD bound variants by read depth
- filter dataset bound variants by read depth
- filter RDD bound variants by reference read depth
- filter dataset bound variants by reference read depth
- filter RDD bound single nucleotide variants
- filter dataset bound single nucleotide variants
- filter RDD bound multiple nucleotide variants
- filter dataset bound multiple nucleotide variants
- filter RDD bound indel variants
- filter dataset bound indel variants
- filter RDD bound variants to single nucleotide variants
- filter dataset bound variants to single nucleotide variants
- filter RDD bound variants to multiple nucleotide variants
- filter dataset bound variants to multiple nucleotide variants
- filter RDD bound variants to indel variants
- filter dataset bound variants to indel variants
- transform dataset via java API
Run completed in 6 minutes, 9 seconds.
Total number of tests run: 1146
Suites: completed 67, aborted 0
Tests: succeeded 1146, failed 0, canceled 0, ignored 5, pending 0
All tests passed.
[INFO] 
[INFO] >>> scoverage-maven-plugin:1.1.1:report (default-cli) > [scoverage]test @ adam-core-spark2_2.11 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-core-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-core-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-core-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/main/scala added.
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/target/generated-sources/src/main/scala added.
[INFO] 
[INFO] --- exec-maven-plugin:1.5.0:java (generate-scala-products) @ adam-core-spark2_2.11 ---
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] 
[INFO] --- exec-maven-plugin:1.5.0:java (generate-scala-projection-fields) @ adam-core-spark2_2.11 ---
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-core-spark2_2.11 ---
[INFO] Modified 2 of 199 .scala files
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:pre-compile (default-cli) @ adam-core-spark2_2.11 ---
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-core-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-core-spark2_2.11 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/main/java:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/main/scala:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/target/generated-sources/src/main/scala:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/target/generated-sources/annotations:-1: info: compiling
[INFO] Compiling 136 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/target/2.11.12/scoverage-classes at 1557957004228
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicDataset.scala:3099: warning: no valid targets for annotation on value uTag - it is discarded unused. You may specify targets with meta-annotations, e.g. @(transient @getter)
[WARNING]   @transient val uTag: TypeTag[U]
[WARNING]    ^
[INFO] [info] Cleaning datadir [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/target/scoverage-data]
[INFO] [info] Beginning coverage instrumentation
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[INFO] [info] Instrumentation completed [16156 statements]
[INFO] [info] Wrote instrumentation file [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/target/scoverage-data/scoverage.coverage.xml]
[INFO] [info] Will write measurement data to [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/target/scoverage-data]
[WARNING] warning: there were 84 deprecation warnings; re-run with -deprecation for details
[WARNING] warning: there were 5 feature warnings; re-run with -feature for details
[WARNING] three warnings found
[INFO] prepare-compile in 0 s
[INFO] compile in 33 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-core-spark2_2.11 ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 6 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/target/2.11.12/scoverage-classes
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:post-compile (default-cli) @ adam-core-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-core-spark2_2.11 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-core-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 150 resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-core-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-core-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-core-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-core-spark2_2.11 ---
Discovery starting.
Discovery completed in 2 seconds, 3 milliseconds.
Run starting. Expected test count is: 1146
RepairPartitionsSuite:
- don't pull from the first partition
- properly handle pulling from an empty iterator
- gets a single read from the partition if there are no other reads in the pair
- gets all the reads from a pair from the start of a partition
- properly handle dropping from an empty iterator
- don't drop from the first partition
- drop a single read from the partition if there are no other reads in the pair
- drops all the reads from a pair from the start of a partition
- only append to the first partition
- drop a single read from the partition and append read when in the middle
- drop reads from the start and don't append when in the last partition
- can't have more records than number of partitions
- unroll array for broadcast
2019-05-15 14:50:41 WARN  Utils:66 - Your hostname, research-jenkins-worker-08 resolves to a loopback address: 127.0.1.1; using 192.168.10.28 instead (on interface eth0)
2019-05-15 14:50:41 WARN  Utils:66 - Set SPARK_LOCAL_IP if you need to bind to another address
2019-05-15 14:50:42 WARN  NativeCodeLoader:62 - Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
- move pairs around an rdd
FlagStatSuite:
- Standard FlagStat test
ModPartitionerSuite:
- report number of partitions correctly
- partition a number that is lower than the number of partitions and positive
- partition a number that is greater than the number of partitions and positive
- partition a number that is lower than the number of partitions and negative
- partition a number that is greater than the number of partitions and negative
- fire an exception if input is not an integer
TwoBitFileSuite:
- correctly read sequence from .2bit file
- correctly return masked sequences from .2bit file
- correctly return Ns from .2bit file
- correctly calculates sequence dictionary
NonoverlappingRegionsSuite:
- alternating returns an alternating seq of items
- Single region returns itself
- Two adjacent regions will be merged
- Nonoverlapping regions will all be returned
- Many overlapping regions will all be merged
- ADAMRecords return proper references
FlankReferenceFragmentsSuite:
- don't put flanks on non-adjacent fragments
- put flanks on adjacent fragments
ReferencePositionSuite:
- create reference position from mapped read
- create reference position from variant
- create reference position from genotype
- create reference position from variant starting at vcf 0
- create reference position from genotype starting at vcf 0
ConsensusGeneratorFromReadsSuite:
- checking search for consensus list for artificial reads
FragmentConverterSuite:
- build a fragment collector and convert to a read
- if a fragment isn't associated with a contig, don't get a fragment collector
- convert an rdd of discontinuous fragments, all from the same contig
- convert an rdd of contiguous fragments, all from the same contig
- convert an rdd of varied fragments from multiple contigs
FileMergerSuite:
- cannot write both empty gzip block and cram eof
- buffer size must be non-negative
AlignmentRecordDatasetSuite:
- sorting reads
- unmapped reads go at the end when sorting
- coverage does not fail on unmapped reads
2019-05-15 14:50:52 WARN  Utils:66 - Truncated the string representation of a plan since it was too large. This behavior can be adjusted by setting 'spark.debug.maxToStringFields' in SparkEnv.conf.
- computes coverage
- computes coverage with multiple samples
- merges adjacent records with equal coverage values
- sorting reads by reference index
- round trip from ADAM to SAM and back to ADAM produces equivalent Read values
- round trip with single CRAM file produces equivalent Read values
- round trip with sharded CRAM file produces equivalent Read values
- SAM conversion sets read mapped flag properly
- load long FASTQ reads
- load FASTQ with no bases
- convert malformed FASTQ (no quality scores) => SAM => well-formed FASTQ => SAM
- round trip from ADAM to FASTQ and back to ADAM produces equivalent Read values
- round trip from ADAM to paired-FASTQ and back to ADAM produces equivalent Read values
- writing a small file with tags should produce the expected result
- writing a small sorted file as SAM should produce the expected result
- writing unordered sam from unordered sam
- writing ordered sam from unordered sam
- write single sam file back
- write single bam file back
- saveAsParquet with save args, sequence dictionary, and read group dictionary
- load parquet to sql, save, re-read from avro
- load from sam, save as partitioned parquet, and re-read from partitioned parquet
- save as SAM format
- save as sorted SAM format
- save as BAM format
- save as sorted BAM format
- save as FASTQ format
- save as ADAM parquet format
- saveAsSam SAM format
- saveAsSam SAM format single file
- saveAsSam sorted SAM format single file
- saveAsSam BAM format
- saveAsSam BAM format single file
- saveAsSam sorted BAM format single file
- saveAsFastq
- saveAsFastq as single file
- saveAsFastq with original base qualities
- saveAsFastq sorted by read name
- saveAsFastq sorted by read name with original base qualities
2019-05-15 14:51:18 WARN  RDDBoundAlignmentRecordDataset:190 - Found 20 read names that don't occur exactly twice:
	1x:	20

Samples:
	simread:1:237728409:true
	simread:1:195211965:false
	simread:1:163841413:false
	simread:1:231911906:false
	simread:1:26472783:false
	simread:1:165341382:true
	simread:1:240344442:true
	simread:1:50683371:false
	simread:1:240997787:true
	simread:1:14397233:false
	simread:1:207027738:true
	simread:1:20101800:true
	simread:1:101556378:false
	simread:1:37577445:false
	simread:1:189606653:true
	simread:1:5469106:true
	simread:1:186794283:true
	simread:1:89554252:false
	simread:1:153978724:false
	simread:1:169801933:true
- saveAsFastq paired FASTQ
2019-05-15 14:51:20 WARN  RDDBoundAlignmentRecordDataset:190 - Found 20 read names that don't occur exactly twice:
	1x:	20

Samples:
	simread:1:237728409:true
	simread:1:195211965:false
	simread:1:163841413:false
	simread:1:231911906:false
	simread:1:26472783:false
	simread:1:165341382:true
	simread:1:240344442:true
	simread:1:50683371:false
	simread:1:240997787:true
	simread:1:14397233:false
	simread:1:207027738:true
	simread:1:20101800:true
	simread:1:101556378:false
	simread:1:37577445:false
	simread:1:189606653:true
	simread:1:5469106:true
	simread:1:186794283:true
	simread:1:89554252:false
	simread:1:153978724:false
	simread:1:169801933:true
- saveAsPairedFastq
2019-05-15 14:51:21 WARN  RDDBoundAlignmentRecordDataset:190 - Found 20 read names that don't occur exactly twice:
	1x:	20

Samples:
	simread:1:237728409:true
	simread:1:195211965:false
	simread:1:163841413:false
	simread:1:231911906:false
	simread:1:26472783:false
	simread:1:165341382:true
	simread:1:240344442:true
	simread:1:50683371:false
	simread:1:240997787:true
	simread:1:14397233:false
	simread:1:207027738:true
	simread:1:20101800:true
	simread:1:101556378:false
	simread:1:37577445:false
	simread:1:189606653:true
	simread:1:5469106:true
	simread:1:186794283:true
	simread:1:89554252:false
	simread:1:153978724:false
	simread:1:169801933:true
- saveAsPairedFastq as single files
- don't lose any reads when piping as SAM
2019-05-15 14:51:32 WARN  OutFormatterRunner:190 - Piped command List(sleep, 10) timed out after 5 seconds.
2019-05-15 14:51:32 WARN  OutFormatterRunner:190 - Piped command List(sleep, 10) timed out after 5 seconds.
- lose all records when a command times out
- lose no records without a timeout
2019-05-15 14:51:53 WARN  OutFormatterRunner:190 - Piped command List(python, /tmp/adamTestMvnEoU0t8M/spark-c37b5cc7-d9de-43c5-8aad-f952f0e221d0/userFiles-ba63b5e7-594a-493e-ac6f-630f53c8d8a5/timeout.py) timed out after 5 seconds.
2019-05-15 14:51:53 WARN  OutFormatterRunner:190 - Piped command List(python, /tmp/adamTestMvnEoU0t8M/spark-c37b5cc7-d9de-43c5-8aad-f952f0e221d0/userFiles-ba63b5e7-594a-493e-ac6f-630f53c8d8a5/timeout.py) timed out after 5 seconds.
- lose some records when a command times out
- don't lose any reads when piping as SAM using java pipe
- don't lose any reads when piping as BAM
- don't lose any reads when piping fastq to sam
- can properly set environment variables inside of a pipe
- read vcf from alignment record pipe !!! IGNORED !!!
- use broadcast join to pull down reads mapped to targets
- use broadcast join against to pull down reads mapped to targets
- use right outer broadcast join to pull down reads mapped to targets
- use right outer broadcast join against to pull down reads mapped to targets
- use shuffle join with feature spanning partitions
- use shuffle join to pull down reads mapped to targets
- use shuffle join with flankSize to pull down reads mapped close to targets
- use right outer shuffle join to pull down reads mapped to targets
- use left outer shuffle join to pull down reads mapped to targets
- use full outer shuffle join to pull down reads mapped to targets
- use shuffle join with group by to pull down reads mapped to targets
- use right outer shuffle join with group by to pull down reads mapped to targets
- cannot provide empty quality score bins
- cannot provide bins with a gap
- cannot provide overlapping bins
- binning quality scores in reads succeeds even if reads have no quality scores
- bin quality scores in reads
- union two read files together
- test k-mer counter
- test dataset based k-mer counter
- transform reads to contig genomic dataset
- transform reads to coverage genomic dataset
- transform reads to feature genomic dataset
- transform reads to fragment genomic dataset
- transform reads to genotype genomic dataset
loading /tmp/adamTestMvnEoU0t8M/TempSuite8705914052647752731.adam as parquet into RDD...
loading /tmp/adamTestMvnEoU0t8M/TempSuite6786657876849724437.adam as parquet into RDD...
- transform reads to variant genomic dataset
- cannot have a null processing step ID
- convert a processing description to htsjdk
- GenomicDataset.sort does not fail on unmapped reads
- GenomicDataset.sortLexicographically does not fail on unmapped reads
- left normalize indels
- running base recalibration with downsampling doesn't drop reads
- filter RDD bound alignments by MAPQ
- filter dataset bound alignments by MAPQ
- filter RDD bound unaligned alignments
- filter dataset bound unaligned alignments
- filter RDD bound unpaired alignments
- filter dataset bound unpaired alignments
- filter RDD bound duplicate alignments
- filter dataset bound duplicate alignments
- filter RDD bound alignments to primary alignments
- filter dataset bound alignments to primary alignments
- filter RDD bound alignments to read group
- filter dataset bound alignments to read group
- filter RDD bound alignments to read groups
- filter dataset bound alignments to read groups
- filter RDD bound alignments to sample
- filter dataset bound alignments to sample
- filter RDD bound alignments to samples
- filter dataset bound alignments to samples
- sort by read name
- transform dataset via java API
SingleReadBucketSuite:
- convert unmapped pair to fragment
- convert proper pair to fragment
- convert read pair to fragment with first of pair chimeric read
RecalibrationTableSuite:
- look up quality scores in table
InterleavedFastqInputFormatSuite:
- interleaved FASTQ hadoop reader: interleaved_fastq_sample1.ifq->interleaved_fastq_sample1.ifq.output
- interleaved FASTQ hadoop reader: interleaved_fastq_sample2.ifq->interleaved_fastq_sample2.ifq.output
- interleaved FASTQ hadoop reader: interleaved_fastq_sample3.ifq->interleaved_fastq_sample3.ifq.output
- interleaved FASTQ hadoop reader: interleaved_fastq_sample4.ifq->interleaved_fastq_sample4.ifq.output
- interleaved FASTQ hadoop reader: interleaved_fastq_sample5.ifq->interleaved_fastq_sample5.ifq.output
TreeRegionJoinSuite:
- run a join between data on a single contig
ReferenceRegionSuite:
- cannot create an empty predicate
- parse empty string throws IllegalArgumentException
- parse contigName only string into reference regions
- parse to end strings into reference regions
- parse string into reference regions
- contains(: ReferenceRegion)
- contains(: ReferencePosition)
- merge
- overlaps and covers
- overlapsBy and coversBy
- distance(: ReferenceRegion)
- distance(: ReferencePosition)
- unstrandedDistance
- subtract fails on non-overlapping and non-covering regions
- subtract
- create region from unmapped read fails
- create region from read with null alignment positions fails
- create stranded region from unmapped read fails
- create stranded region from read with null alignment positions fails
- create stranded region from read with null alignment strand fails
- create stranded region from read on forward strand
- create stranded region from read on reverse strand
- create region from mapped read contains read start and end
- validate that adjacent regions can be merged
- validate that non-adjacent regions cannot be merged
- validate that nearby regions can be merged
- validate that non-nearby regions cannot be merged
- compute convex hull of two sets
- region name is sanitized when creating region from read
- intersection fails on non-overlapping regions
- intersection fails when minOverlap is not met
- compute intersection
- overlap tests for oriented reference region
- check the width of a reference region
- make a reference region for a variant or genotype
- make a reference region for a variant or genotype starting at VCF 0
- uniformly pad a reference region
- uniformly pad a reference region into negative coordinate space, ensure non negative start
- unevenly pad a reference region
- unevenly pad a reference region into negative coordinate space, ensure non negative start
- can build an open ended reference region
- can build an open ended reference region with strand
- can build a reference region with an open start position
- can build a reference region with an open start position with strand
- can build a reference region that covers the entirety of a contig
- can build a reference region that covers the entirety of a contig with strand
- convert a genotype and then get the reference region
- create region from feature with null alignment positions fails
- create stranded region from feature with null alignment positions fails
- create stranded region from feature with null alignment strand fails
- create stranded region from feature on forward strand
- create stranded region from feature on reverse strand
AlignmentRecordConverterSuite:
- testing the fields in a converted ADAM Read
- converting a read with null quality is OK
- convert a read to fastq
- reverse complement reads when converting to fastq
- converting to fastq with unmapped reads where  read reverse complemented flag (Ox10) was NOT set
- converting to fastq with unmapped reads where reverse complemented flag (0x10) was set
- converting a fragment with no alignments should yield unaligned reads
- converting a fragment with alignments should restore the alignments
- read negative strand is propagated even when not mapped
CoverageDatasetSuite:
- correctly saves coverage
- can read a bed file to coverage
- correctly filters coverage with predicate
- keeps sample metadata
- can read a bed file with multiple samples to coverage
- correctly flatmaps coverage without aggregated bins
- correctly flatmaps coverage with aggregated bins
- collapses coverage records in one partition
- approximately collapses coverage records in multiple partitions
- transform coverage to contig rdd
- transform coverage to feature rdd
- transform coverage to fragment rdd
- transform coverage to read rdd
- transform coverage to genotype rdd
- transform coverage to variant rdd
- transform coverage to variant context rdd
- copy coverage rdd
- copy coverage dataset
- copy coverage rdd without sequence dictionary
- copy coverage dataset without sequence dictionary
- transform dataset via java API
RecalibratorSuite:
- don't replace quality if quality was null
- if no covariates, return alignment
- skip recalibration if base is below quality threshold
- recalibrate changed bases above quality threshold
GenotypeDatasetSuite:
- union two genotype genomic datasets together
- round trip to parquet
- round trip to partitioned parquet
- use broadcast join to pull down genotypes mapped to targets
- use right outer broadcast join to pull down genotypes mapped to targets
- use shuffle join to pull down genotypes mapped to targets
- use right outer shuffle join to pull down genotypes mapped to targets
- use left outer shuffle join to pull down genotypes mapped to targets
- use full outer shuffle join to pull down genotypes mapped to targets
- use shuffle join with group by to pull down genotypes mapped to targets
- use right outer shuffle join with group by to pull down genotypes mapped to targets
- convert back to variant contexts
- load parquet to sql, save, re-read from avro
- transform genotypes to contig genomic dataset
- transform genotypes to coverage genomic dataset
- transform genotypes to feature genomic dataset
- transform genotypes to fragment genomic dataset
- transform genotypes to read genomic dataset
- transform genotypes to variant genomic dataset
- transform genotypes to variant context genomic dataset
- loading genotypes then converting to variants yields same output as loading variants
- filter RDD bound genotypes to genotype filters passed
- filter dataset bound genotypes to genotype filters passed
- filter RDD bound genotypes by genotype quality
- filter dataset bound genotypes by genotype quality
- filter RDD bound genotypes by read depth
- filter dataset bound genotypes by read depth
- filter RDD bound genotypes by alternate read depth
- filter dataset bound genotypes by alternate read depth
- filter RDD bound genotypes by reference read depth
- filter dataset bound genotypes by reference read depth
- filter RDD bound genotypes by sample
- filter dataset bound genotypes by sample
- filter RDD bound genotypes by samples
- filter dataset bound genotypes by samples
- filter RDD bound no call genotypes
- filter dataset no call genotypes
- round trip gVCF END attribute without nested variant annotations rdd bound
- round trip gVCF END attribute without nested variant annotations dataset bound
- round trip gVCF END attribute with nested variant annotations rdd bound
- round trip gVCF END attribute with nested variant annotations dataset bound
- transform dataset via java API
FragmentDatasetSuite:
- don't lose any reads when piping interleaved fastq to sam
- don't lose any reads when piping tab5 to sam
- don't lose any reads when piping tab6 to sam
- use broadcast join to pull down fragments mapped to targets
- use right outer broadcast join to pull down fragments mapped to targets
- use shuffle join to pull down fragments mapped to targets
- use right outer shuffle join to pull down fragments mapped to targets
- use left outer shuffle join to pull down fragments mapped to targets
- use full outer shuffle join to pull down fragments mapped to targets
- use shuffle join with group by to pull down fragments mapped to targets
- use right outer shuffle join with group by to pull down fragments mapped to targets
- bin quality scores in fragments
- union two genomic datasets of fragments together
- load parquet to sql, save, re-read from avro
- transform fragments to contig genomic dataset
- transform fragments to coverage genomic dataset
- transform fragments to feature genomic dataset
- transform fragments to read genomic dataset
- transform fragments to genotype genomic dataset
- transform fragments to variant genomic dataset
- transform fragments to variant context genomic dataset
- paired read names with index sequences in read names can group into fragments
- interleaved paired read names with index sequences in read names can group into fragments
- interleaved paired read names with index sequences in read names as fragments
- transform dataset via java API
SingleFastqInputFormatSuite:
- FASTQ hadoop reader: fastq_sample1.fq->single_fastq_sample1.fq.output
- FASTQ hadoop reader: fastq_sample2.fq->single_fastq_sample2.fq.output
- FASTQ hadoop reader: fastq_sample3.fq->single_fastq_sample3.fq.output
- FASTQ hadoop reader: fastq_sample4.fq->single_fastq_sample4.fq.output
VariantContextDatasetSuite:
- load a gvcf with a missing info field set to .
- union two variant context genomic datasets together
- can write, then read in .vcf file
- can write as a single file via simple saveAsVcf method, then read in .vcf file
- can write as a single file via full saveAsVcf method, then read in .vcf file
- transform a vcf file with bad header
- read a vcf file with multi-allelic variants to split
- support VCFs with +Inf/-Inf float values
- support VCFs with `nan` instead of `NaN` float values
- don't lose any variants when piping as VCF
- pipe works with empty partitions
- don't lose any non-default VCF header lines or attributes when piping as VCF
- save a file sorted by contig index
- save a lexicographically sorted file
- save a multiallelic gvcf !!! IGNORED !!!
- test metadata
- save sharded bgzip vcf
- save bgzip vcf as single file
- can't save file with non-vcf extension
- transform variant contexts to contig genomic dataset
- transform variant contexts to coverage genomic dataset
- transform variant contexts to feature genomic dataset
- transform variant contexts to fragment genomic dataset
- transform variant contexts to read genomic dataset
- transform variant contexts to genotype genomic dataset
- transform variant contexts to variant genomic dataset
- save and reload from partitioned parquet
- transform dataset via java API
ConsensusSuite:
- test the insertion of a consensus insertion into a reference
- test the insertion of a consensus deletion into a reference
- inserting empty consensus returns the reference
AttributeUtilsSuite:
- parseTags returns a reasonable set of tagStrings
- parseTags works with NumericSequence tagType
- empty string is parsed as zero tagStrings
- incorrectly formatted tag throws an exception
- string tag with a ':' in it is correctly parsed
- oq string tag with many ':' in it is correctly parsed
- oq string tag with a ',' in it is correctly parsed
- if a tag is an array but doesn't define it's format, throw
MarkDuplicatesSuite:
- single read
- reads at different positions
- reads at the same position
- reads at the same position with clipping
- reads on reverse strand
- unmapped reads
- read pairs
- read pairs with fragments
- quality scores
- read pairs that cross chromosomes
- single fragment
- fragments at different positions
- fragments at the same position
- fragments at the same position with clipping
- fragments on reverse strand
- unmapped fragments
- read pairs as fragments
- read pairs with fragments as fragments
- chimeric fragments
- inverse pairs
- supplemental reads
TranscriptEffectConverterSuite:
- parse empty transcript effect
- parse empty transcript effect strict validation stringency
- parse invalid transcript effect
- parse invalid transcript effect strict validation stringency
- parse transcript effect
- parse empty list VCF ANN attribute
- parse empty list VCF ANN attribute strict validation stringency
- parse empty string VCF ANN attribute
- parse empty string VCF ANN attribute strict validation stringency
- parse invalid VCF ANN attribute
- parse invalid VCF ANN attribute strict validation stringency
- parse VCF ANN attribute with one transcript effect
- parse VCF ANN attribute with multiple transcript effects
- convert to transcript effect from null VCF ANN attribute in variant context
- convert to transcript effect from empty list VCF ANN attribute in variant context
- convert to transcript effect from empty list VCF ANN attribute in variant context strict validation stringency
- convert to transcript effect from empty string VCF ANN attribute in variant context
- convert to transcript effect from empty string VCF ANN attribute in variant context strict validation stringency
- convert to transcript effect from invalid VCF ANN attribute in variant context
- convert to transcript effect from invalid VCF ANN attribute in variant context strict validation stringency
2019-05-15 14:54:17 WARN  TranscriptEffectConverter$:190 - Could not convert VCF INFO reserved key ANN value to TranscriptEffect, caught java.lang.NumberFormatException: For input string: "not a number".
- convert to transcript effect from VCF ANN attribute with invalid number in variant context lenient validation stringency
2019-05-15 14:54:17 WARN  TranscriptEffectConverter$:190 - Could not convert VCF INFO reserved key ANN value to TranscriptEffect, caught java.lang.NumberFormatException: For input string: "not a number".
- convert to transcript effect from VCF ANN attribute with invalid fraction in variant context lenient validation stringency
- convert to transcript effect from VCF ANN attribute with invalid number in variant context strict validation stringency
- convert to transcript effect from VCF ANN attribute with invalid fraction in variant context strict validation stringency
- convert to transcript effect from VCF ANN attribute in variant context different alt allele
- convert to transcript effect from VCF ANN attribute in variant context same alt allele
- convert to transcript effect from VCF ANN attribute in variant context multiple effects same alt allele
- convert transcript effect to VCF ANN attribute value
- convert transcript effect with null fields to VCF ANN attribute value
2019-05-15 14:54:17 WARN  TranscriptEffectConverter$:190 - Incorrect fractional value ?/2, missing numerator
- convert transcript effect with incorrect fractional value to VCF ANN attribute value
IndelRealignmentTargetSuite:
- checking simple realignment target
- creating simple target from read with deletion
- creating simple target from read with insertion
- joining simple realignment targets on same chr
- joining simple realignment targets on different chr throws exception
- creating targets from three intersecting reads, same indel
- creating targets from three intersecting reads, two different indel
- creating targets from two disjoint reads
- creating targets for artificial reads: one-by-one
- creating targets for artificial reads: all-at-once (merged)
- creating indel targets for mason reads
- additional indel targets taken from consensus generator
NormalizationUtilsSuite:
- cannot move an indel left if there are no bases to it's left
- move a simple indel to farthest position left until bases run out
- move a simple indel to farthest position left, past length of indel
- cannot move a left normalized indel in a short tandem repeat
- move an indel in a short tandem repeat
- move an indel in a short tandem repeat of more than 2 bases, where shift is not an integer multiple of repeated sequence length
- moving a simple read with single deletion that cannot shift
- shift an indel left by 0 in a cigar
- shift an indel left by 1 in a cigar
- do not left align a complex read which is already left aligned
ReadGroupDictionarySuite:
- simple conversion to and from sam read group
- sample name must be set
- simple equality checks
- get samples from read group dictionary
- empty read group is empty
- merging a dictionary with itself should work
- round trip a record with all attributes set
NucleotideContigFragmentDatasetSuite:
- union two ncf genomic datasets together
- round trip a ncf to parquet
- round trip a ncf to partitioned parquet
- save fasta back as a single file
- generate sequence dict from fasta
- recover reference string from a single contig fragment
- recover trimmed reference string from a single contig fragment
- recover reference string from multiple contig fragments
- extract sequences based on the list of reference regions
- recover trimmed reference string from multiple contig fragments
- testing nondeterminism from reduce when recovering referencestring
- save single contig fragment as FASTA text file
- save single contig fragment with description as FASTA text file
- save single contig fragment with null fields as FASTA text file
- save single contig fragment with null fragment number as FASTA text file
- save single contig fragment with null number of fragments in contig as FASTA text file
- save multiple contig fragments from same contig as FASTA text file
- save multiple contig fragments with description from same contig as FASTA text file
- merge single contig fragment null fragment number
- merge single contig fragment number zero
- merge multiple contig fragments
- save as parquet and apply predicate pushdown
- load fasta sequences from GFF3 file
- transform contigs to coverage genomic dataset
- transform contigs to feature genomic dataset
- transform contigs to fragment genomic dataset
- transform contigs to read genomic dataset
- transform contigs to genotype genomic dataset
- transform contigs to variant genomic dataset
- transform contigs to variant context genomic dataset
RightOuterTreeRegionJoinSuite:
- Ensure same reference regions get passed together
- Overlapping reference regions
InnerShuffleRegionJoinSuite:
- Overlapping reference regions
- Multiple reference regions do not throw exception
FeatureDatasetSuite:
- round trip GTF format
- save GTF as GFF3 format
- save GTF as BED format
- save GTF as IntervalList format
- save GTF as NarrowPeak format
- save GFF3 as GTF format
- save GFF3 as BED format
- save GFF3 as IntervalList format
- save GFF3 as NarrowPeak format
- round trip GFF3 format
- ignore FASTA sequence in GFF3 file
- save BED as GTF format
- save BED as GFF3 format
- save BED as IntervalList format
- save BED as NarrowPeak format
- round trip BED6 format
- keeps sample metadata
- round trip BED12 format
- save to UCSC BED format
- save IntervalList as GTF format
- save IntervalList as GFF3 format
- save IntervalList as BED format
- save IntervalList as IntervalList format
- save IntervalList as NarrowPeak format
- round trip IntervalList format
- save NarrowPeak as GTF format
- save NarrowPeak as GFF3 format
- save NarrowPeak as BED format
- save NarrowPeak as IntervalList format
- save NarrowPeak as NarrowPeak format
- round trip NarrowPeak format
- sort by reference
- sort by reference and feature fields
- sort gene features by reference and gene structure
- sort transcript features by reference and gene structure
- sort exon features by reference and gene structure
- sort intron features by reference and gene structure
- correctly flatmaps CoverageDataset from FeatureDataset
- use broadcast join to pull down features mapped to targets
- use right outer broadcast join to pull down features mapped to targets
- use shuffle join to pull down features mapped to targets
- use right outer shuffle join to pull down features mapped to targets
- use left outer shuffle join to pull down features mapped to targets
- use full outer shuffle join to pull down features mapped to targets
- use shuffle join with group by to pull down features mapped to targets
- use right outer shuffle join with group by to pull down features mapped to targets
- union two feature rdds together
- obtain sequence dictionary contig lengths from header in IntervalList format
- don't lose any features when piping as BED format
- don't lose any features when piping as GTF format
- don't lose any features when piping as GFF3 format
- don't lose any features when piping as NarrowPeak format
- load parquet to sql, save, re-read from avro
- load partitioned parquet to sql, save, re-read from avro
- transform features to contig rdd
- transform features to coverage rdd
- transform features to fragment rdd
- transform features to read rdd
- transform features to genotype rdd
- transform features to variant rdd
- transform features to variant context rdd
- filter RDD bound features by feature type
- filter dataset bound features by feature type
- filter RDD bound features by feature types
- filter dataset bound features by feature types
- filter RDD bound features by gene
- filter dataset bound features by gene
- filter RDD bound features by genes
- filter dataset bound features by genes
- filter RDD bound features by transcript
- filter dataset bound features by transcript
- filter RDD bound features by transcripts
- filter dataset bound features by transcripts
- filter RDD bound features by exon
- filter dataset bound features by exon
- filter RDD bound features by exons
- filter dataset bound features by exons
- filter RDD bound features by score
- filter dataset bound features by score
- filter RDD bound features by parent
- filter dataset bound features by parent
- filter RDD bound features by parents
- filter dataset bound features by parents
- filter RDD bound features by attribute
- filter dataset bound features by attribute
- transform dataset via java API
AlphabetSuite:
- test size of a case-sensitive alphabet
- test apply of a case-sensitive alphabet
- test reverse complement of a case-sensitive alphabet
- test exact reverse complement of a case-sensitive alphabet
- test size of a case-insensitive alphabet
- test apply of a case-insensitive alphabet
- test reverse complement of a case-insensitive alphabet
- test exact reverse complement of a case-insensitive alphabet
- DNA alphabet
- map unknown bases to N
SortedGenomicDatasetSuite:
- testing that partition and sort provide correct outputs
- testing copartition maintains or adds sort
- testing that we don't drop any data on the right side even though it doesn't map to a partition on the left
- testing that sorted shuffleRegionJoin matches unsorted
- testing that sorted fullOuterShuffleRegionJoin matches unsorted
- testing that sorted rightOuterShuffleRegionJoin matches unsorted
- testing that sorted leftOuterShuffleRegionJoin matches unsorted
- testing that we can persist the sorted knowledge
VariantContextConverterSuite:
- Convert htsjdk site-only SNV to ADAM
- Convert somatic htsjdk site-only SNV to ADAM
- Convert htsjdk site-only CNV to ADAM
- Convert htsjdk SNV w/ genotypes w/ phase information to ADAM
- Convert htsjdk SNV with different variant filters to ADAM
- Convert htsjdk SNV with different genotype filters to ADAM
- Convert ADAM site-only SNV to htsjdk
- Convert ADAM SNV w/ genotypes to htsjdk
- Convert ADAM SNV w/ genotypes but bad SB to htsjdk with strict validation
2019-05-15 14:55:27 WARN  VariantContextConverter:2300 - Applying annotation extraction function <function2> to {"variant": {"referenceName": "1", "start": 0, "end": 1, "names": [], "splitFromMultiAllelic": false, "referenceAllele": "A", "alternateAllele": "T", "quality": null, "filtersApplied": null, "filtersPassed": null, "filtersFailed": [], "annotation": null}, "referenceName": null, "start": null, "end": null, "variantCallingAnnotations": {"filtersApplied": null, "filtersPassed": null, "filtersFailed": [], "downsampled": null, "baseQRankSum": null, "fisherStrandBiasPValue": 3.0, "rmsMapQ": 0.0, "mapq0Reads": 5, "mqRankSum": null, "readPositionRankSum": null, "genotypePriors": [], "genotypePosteriors": [], "vqslod": null, "culprit": null, "attributes": {}}, "sampleId": "NA12878", "sampleDescription": null, "processingDescription": null, "alleles": ["REF", "ALT"], "expectedAlleleDosage": null, "referenceReadDepth": null, "alternateReadDepth": null, "readDepth": null, "minReadDepth": null, "genotypeQuality": null, "genotypeLikelihoods": [], "nonReferenceLikelihoods": [], "strandBiasComponents": [0, 2], "splitFromMultiAllelic": false, "phased": false, "phaseSetId": null, "phaseQuality": null} failed with java.lang.IllegalArgumentException: requirement failed: Illegal strand bias components length. Must be empty or 4. In:
{"variant": {"referenceName": "1", "start": 0, "end": 1, "names": [], "splitFromMultiAllelic": false, "referenceAllele": "A", "alternateAllele": "T", "quality": null, "filtersApplied": null, "filtersPassed": null, "filtersFailed": [], "annotation": null}, "referenceName": null, "start": null, "end": null, "variantCallingAnnotations": {"filtersApplied": null, "filtersPassed": null, "filtersFailed": [], "downsampled": null, "baseQRankSum": null, "fisherStrandBiasPValue": 3.0, "rmsMapQ": 0.0, "mapq0Reads": 5, "mqRankSum": null, "readPositionRankSum": null, "genotypePriors": [], "genotypePosteriors": [], "vqslod": null, "culprit": null, "attributes": {}}, "sampleId": "NA12878", "sampleDescription": null, "processingDescription": null, "alleles": ["REF", "ALT"], "expectedAlleleDosage": null, "referenceReadDepth": null, "alternateReadDepth": null, "readDepth": null, "minReadDepth": null, "genotypeQuality": null, "genotypeLikelihoods": [], "nonReferenceLikelihoods": [], "strandBiasComponents": [0, 2], "splitFromMultiAllelic": false, "phased": false, "phaseSetId": null, "phaseQuality": null}.
- Convert ADAM SNV w/ genotypes but bad SB to htsjdk with lenient validation
- Convert htsjdk multi-allelic sites-only SNVs to ADAM
- Convert htsjdk multi-allelic SNVs to ADAM and back to htsjdk
- Convert gVCF reference records to ADAM
- Convert htsjdk variant context with no IDs to ADAM
- Convert htsjdk variant context with one ID to ADAM
- Convert htsjdk variant context with multiple IDs to ADAM
- Convert ADAM variant context with no names to htsjdk
- Convert ADAM variant context with one name to htsjdk
- Convert ADAM variant context with multiple names to htsjdk
- Convert ADAM variant context with null filters applied to htsjdk
- Convert ADAM variant context with no filters applied to htsjdk
- Convert ADAM variant context with passing filters to htsjdk
- Convert ADAM variant context with failing filters to htsjdk
- no phasing set going htsjdk->adam
- phased but no phase set info going htsjdk->adam
- set phase set and extract going htsjdk->adam
- no allelic depth going htsjdk->adam
- set allelic depth going htsjdk->adam
- no gt read depth going htsjdk->adam
- extract gt read depth going htsjdk->adam
- no min gt read depth going htsjdk->adam
- extract min gt read depth going htsjdk->adam
- no genotype quality going htsjdk->adam
- extract genotype quality going htsjdk->adam
- no phred likelihood going htsjdk->adam
- extract phred likelihoods going htsjdk->adam
- no strand bias info going htsjdk->adam
- extract strand bias info going htsjdk->adam
- no filters going htsjdk->adam
- filters passed going htsjdk->adam
- extract single filter going htsjdk->adam
- extract multiple filters going htsjdk->adam
- no fisher strand bias going htsjdk->adam
- extract fisher strand bias going htsjdk->adam
- no rms mapping quality going htsjdk->adam
- extract rms mapping quality going htsjdk->adam
- no mq0 going htsjdk->adam
- extract mq0 going htsjdk->adam
- no gt read depth going adam->htsjdk
- extract gt read depth going adam->htsjdk
- throw iae if missing one component of gt read depth going adam->htsjdk
- no depth going adam->htsjdk
- extract depth going adam->htsjdk
- no min depth going adam->htsjdk
- extract min depth going adam->htsjdk
- no quality going adam->htsjdk
- extract quality going adam->htsjdk
- no genotype likelihoods going adam->htsjdk
- extract genotype likelihoods going adam->htsjdk
- no strand bias going adam->htsjdk
- malformed strand bias going adam->htsjdk
- extract strand bias going adam->htsjdk
- no phasing info going adam->htsjdk
- unphased going adam->htsjdk
- phased but no ps/pq going adam->htsjdk
- phased but no pq going adam->htsjdk
- phased but no ps going adam->htsjdk
- phased going adam->htsjdk
- no filter info going adam->htsjdk
- if filters applied, must set passed/failed going adam->htsjdk
- filters passed going adam->htsjdk
- if filters failed, must set filters failed going adam->htsjdk
- single filter failed going adam->htsjdk
- multiple filters failed going adam->htsjdk
- no fisher strand bias going adam->htsjdk
- extract fisher strand bias going adam->htsjdk
- no rms mapping quality going adam->htsjdk
- extract rms mapping quality going adam->htsjdk
- no mapping quality 0 reads going adam->htsjdk
- extract mapping quality 0 reads going adam->htsjdk
- no names set going htsjdk->adam
- single name set going htsjdk->adam
- multiple names set going htsjdk->adam
- no quality going htsjdk->adam
- quality set going htsjdk->adam
- no filters applied going htsjdk->adam
- filters applied and passed going htsjdk->adam
- single filter applied and failed going htsjdk->adam
- multiple filters applied and failed going htsjdk->adam
- no names set adam->htsjdk
- set a single name adam->htsjdk
- set multiple names adam->htsjdk
- no qual set adam->htsjdk
- qual is set adam->htsjdk
- no filters applied adam->htsjdk
- null filters applied adam->htsjdk
- filters passed adam->htsjdk
- if filter failed, must have filters adam->htsjdk
- single filter failed adam->htsjdk
- multiple filters failed adam->htsjdk
- no ancestral allele set going htsjdk->adam
- ancestral allele set going htsjdk->adam
- no dbsnp membership set going htsjdk->adam
- dbsnp membership set going htsjdk->adam
- no hapmap2 membership set going htsjdk->adam
- hapmap2 membership set going htsjdk->adam
- no hapmap3 membership set going htsjdk->adam
- hapmap3 membership set going htsjdk->adam
- no validated set going htsjdk->adam
- validated set going htsjdk->adam
- no 1000G membership set going htsjdk->adam
- 1000G membership set going htsjdk->adam
- not somatic going htsjdk->adam
- somatic going htsjdk->adam
- no allele count going htsjdk->adam
- single allele count going htsjdk->adam
- multiple allele counts going htsjdk->adam
- no allele frequency going htsjdk->adam
- single allele frequency going htsjdk->adam
- single allele frequency is +Inf going htsjdk->adam
- single allele frequency is -Inf going htsjdk->adam
- multiple allele frequencies going htsjdk->adam
- no CIGAR going htsjdk->adam
- single CIGAR going htsjdk->adam
- multiple CIGARs going htsjdk->adam
- no read depth going htsjdk->adam
- single read depth going htsjdk->adam
- multiple read depths going htsjdk->adam
- no forward read depth going htsjdk->adam
- single forward read depth going htsjdk->adam
- multiple forward read depths going htsjdk->adam
- no reverse read depth going htsjdk->adam
- single reverse read depth going htsjdk->adam
- multiple reverse read depths going htsjdk->adam
- no ancestral allele set adam->htsjdk
- ancestral allele set adam->htsjdk
- no dbsnp membership set adam->htsjdk
- dbsnp membership set adam->htsjdk
- no hapmap2 membership set adam->htsjdk
- hapmap2 membership set adam->htsjdk
- no hapmap3 membership set adam->htsjdk
- hapmap3 membership set adam->htsjdk
- no validated set adam->htsjdk
- validated set adam->htsjdk
- no 1000G membership set adam->htsjdk
- 1000G membership set adam->htsjdk
- no allele count set adam->htsjdk
- allele count set adam->htsjdk
- no allele frequency set adam->htsjdk
- allele frequency set adam->htsjdk
- no cigar set adam->htsjdk
- cigar set adam->htsjdk
- no read depth set adam->htsjdk
- read depth set adam->htsjdk
- read depth without reference read depth
- reference read depth without read depth
- no forward read depth set adam->htsjdk
- forward read depth set adam->htsjdk
- reference forward read depth without forward read depth
- forward read depth without reference forward read depth
- no reverse read depth set adam->htsjdk
- reverse read depth set adam->htsjdk
- reference reverse read depth without reverse read depth
- reverse read depth without reference reverse read depth
- VCF INFO attribute Number=0 Type=Flag adam->htsjdk
- VCF INFO attribute Number=4 Type=Flag adam->htsjdk unsupported, strict !!! IGNORED !!!
- VCF INFO attribute Number=1 Type=Integer adam->htsjdk
- VCF INFO attribute Number=4 Type=Integer adam->htsjdk
- VCF INFO attribute Number=A Type=Integer adam->htsjdk
- VCF INFO attribute Number=R Type=Integer adam->htsjdk
- VCF INFO attribute Number=R Type=String adam->htsjdk
- VCF INFO attribute Number=G Type=String adam->htsjdk not supported
- VCF INFO attribute Number=0 Type=Flag htsjdk->adam
- VCF INFO attribute Number=1 Type=Integer htsjdk->adam
- VCF INFO attribute Number=4 Type=Integer htsjdk->adam
- VCF INFO attribute Number=4 Type=Float htsjdk->adam
- VCF INFO attribute Number=A Type=Integer htsjdk->adam
- VCF INFO attribute Number=R Type=Integer htsjdk->adam
- VCF INFO attribute Number=R Type=String htsjdk->adam
- VCF INFO attribute Number=G Type=String htsjdk->adam not supported
- VCF FORMAT attribute Number=0 Type=Flag adam->htsjdk not supported
- VCF FORMAT attribute Number=1 Type=Integer adam->htsjdk
- VCF FORMAT attribute Number=4 Type=Integer adam->htsjdk
- VCF FORMAT attribute Number=A Type=Integer adam->htsjdk
- VCF FORMAT attribute Number=R Type=Integer adam->htsjdk
- VCF FORMAT attribute Number=R Type=String adam->htsjdk
- VCF FORMAT attribute Number=0 Type=Flag htsjdk->adam is not supported
- VCF FORMAT attribute Number=1 Type=Integer htsjdk->adam
- VCF FORMAT attribute Number=4 Type=Integer htsjdk->adam
- VCF FORMAT attribute Number=4 Type=Float htsjdk->adam
- VCF FORMAT attribute Number=A Type=Integer htsjdk->adam
- VCF FORMAT attribute Number=R Type=Integer htsjdk->adam
- VCF FORMAT attribute Number=R Type=String htsjdk->adam
- VCF FORMAT attribute Number=G Type=String htsjdk->adam
- respect end position for symbolic alts
FastqRecordConverterSuite:
- test read name suffix and index of pair must match
- test parseReadInFastq, read suffix removal
- test parseReadInFastq, read metadata removal
- test parseReadInFastq, read quality shorter than read length, padded with B
- test parseReadInFastq, read quality longer than read length 
- test parseReadInFastq, no read quality
- testing FastqRecordConverter.convertPair with valid input
- testing FastqRecordConverter.convertPair with 7-line invalid input
- testing FastqRecordConverter.convertPair with invalid input: first read length and qual don't match
- testing FastqRecordConverter.convertPair with invalid input: second read length and qual don't match
- testing FastqRecordConverter.convertFragment with valid input
- testing FastqRecordConverter.convertFragment with another valid input having /1, /2 suffixes
- testing FastqRecordConverter.convertFragment with invalid input: different read names
- testing FastqRecordConverter.convertRead with valid input
- testing FastqRecordConverter.convertRead with valid input: setFirstOfPair set to true
- testing FastqRecordConverter.convertRead with valid input: setSecondOfPair set to true
- testing FastqRecordConverter.convertRead with valid input: setFirstOfPair and setSecondOfPair both true
- testing FastqRecordConverter.convertRead with valid input, no qual, strict
- testing FastqRecordConverter.convertRead with valid input, no qual, not strict
AttributeSuite:
- test SAMTagAndValue parsing
- Attributes can be correctly re-encoded as text SAM tags
GFF3HeaderWriterSuite:
- write gff3 header pragma
BinQualitiesSuite:
- make a quality score bin
- can't have a quality score bin with negative score
- can't have a quality score bin with high score below low
- can't have a quality score bin with high score above 255
- can't have a quality score bin with score outside
- make a quality score bin from a string
- quality score bin must have exactly 3 elements
- quality score bin must be integers
- must define at least one bin
- build multiple bins
- rewrite quality scores for a read
- rewriting quality scores fails if bins overlap
- rewriting quality scores fails if base is out of bounds
- skip read if qualities are null
- rewrite a read
IndexedFastaFileSuite:
- correctly generates sequence dictionary from .dict file
- correctly gets sequence
- fails when fai index is not provided
2019-05-15 14:55:28 WARN  IndexedFastaFile:190 - Caught exception java.lang.NullPointerException when loading FASTA sequence dictionary. Using empty dictionary instead.
- passes when dict is not provided and ValidationStringency = LENIENT
SAMRecordConverterSuite:
- testing the fields in an alignmentRecord obtained from a mapped samRecord conversion
- testing the fields in an alignmentRecord obtained from an unmapped samRecord conversion
- '*' quality gets nulled out
- don't keep denormalized fields
ADAMContextSuite:
- ctr is accessible
- load from an empty directory
- sc.loadParquet should not fail on unmapped reads
- sc.loadParquet should not load a file without a type specified
- can read a small .SAM file
- can read a small .SAM file with a bad header with lenient validation
- loading a sam file with a bad header and strict stringency should fail
- can read a small .CRAM file
- can read a small .SAM with all attribute tag types
- can filter a .SAM file based on quality
- Can convert to phred
- Can convert from phred
- Can read a .gtf file
- Can read a .bed file
- Can read a BED 12 file
- Can read a .narrowPeak file
- Can read a .interval_list file
2019-05-15 14:55:31 WARN  VariantContextConverter:1662 - Saw invalid info field java.lang.IllegalArgumentException: Multivalued flags are not supported for INFO lines: INFO=<ID=ABADFLAG,Number=.,Type=Flag,Description="A no good, very bad flag.">. Ignoring...
2019-05-15 14:55:31 WARN  VariantContextConverter:2169 - Generating field extractor from header line INFO=<ID=ABADFLAG,Number=.,Type=Flag,Description="A no good, very bad flag."> failed: java.lang.IllegalArgumentException: Multivalue flags are not supported for INFO lines: INFO=<ID=ABADFLAG,Number=.,Type=Flag,Description="A no good, very bad flag.">
- can read a small .vcf file with a validation issue
- can read a small .vcf file
2019-05-15 14:55:31 WARN  VCFInputFormat:218 - file:/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/target/2.11.12/test-classes/test.vcf.gz is not splittable, consider using block-compressed gzip (BGZF)
- can read a gzipped .vcf file
- can read a vcf file with an empty alt
- can read a BGZF gzipped .vcf file with .gz file extension
- can read a BGZF gzipped .vcf file with .bgz file extension
- can read a vcf file with a projection
- can read an uncompressed BCFv2.2 file !!! IGNORED !!!
- can read a BGZF compressed BCFv2.2 file !!! IGNORED !!!
- loadIndexedVcf with 1 ReferenceRegion
- loadIndexedVcf with multiple ReferenceRegions
- load block compressed interleaved fastq
- import records from interleaved FASTQ: 1
- import records from interleaved FASTQ: 2
- import records from interleaved FASTQ: 3
- import records from interleaved FASTQ: 4
- import block compressed single fastq
- import records from single ended FASTQ: 1
- import records from single ended FASTQ: 2
- import records from single ended FASTQ: 3
- import records from single ended FASTQ: 4
- filter on load using the filter2 API
- saveAsParquet with file path
- saveAsParquet with file path, block size, page size
- saveAsParquet with save args
- read a HLA fasta from GRCh38
- read a gzipped fasta file
- loadIndexedBam with 1 ReferenceRegion
- loadIndexedBam with multiple ReferenceRegions
- loadIndexedBam with multiple ReferenceRegions and indexed bams
- loadIndexedBam with multiple ReferenceRegions and a directory of indexed bams
- loadIndexedBam should throw exception without an index file
- loadIndexedBam should work with indexed file with index naming format <filename>.bai
- loadIndexedBam glob should throw exception without an index file
- loadBam with a glob
- loadBam with a directory
- load vcf with a glob
- load vcf from a directory
- load gvcf which contains a multi-allelic row from a directory
- load and save gvcf which contains rows without likelihoods
- parse annotations for multi-allelic rows
- load parquet with globs
- bad glob should fail
- empty directory should fail
- can read a SnpEff-annotated .vcf file
- loadAlignments should not fail on single-end and paired-end fastq reads
- load queryname sorted sam as fragments
- load query grouped sam as fragments
- load paired fastq
- load paired fastq without cache
- load paired fastq as fragments
- load paired fastq as fragments without cache
- load HTSJDK sequence dictionary
- load Bedtools .genome file as sequence dictionary
- load Bedtools .genome.txt file as sequence dictionary
- load UCSC Genome Browser chromInfo.txt file as sequence dictionary
- load unrecognized file extension as sequence dictionary fails
- load BED features with Bedtools .genome file as sequence dictionary
- load BED features with Bedtools .genome file as sequence dictionary, no matching features
- convert program record
- load program record from sam file
CycleCovariateSuite:
- compute covariates for an unpaired read on the negative strand
- compute covariates for a first-of-pair read on the negative strand
- compute covariates for a second-of-pair read on the negative strand
- compute covariates for an unpaired read on the positive strand
- compute covariates for a first-of-pair read on the positive strand
- compute covariates for a second-of-pair read on the positive strand
ConsensusGeneratorFromKnownsSuite:
- no consensuses for empty target
- no consensuses for reads that don't overlap a target
- return a consensus for read overlapping a single target
RichCigarSuite:
- moving 2 bp from a deletion to a match operator
- moving 2 bp from a insertion to a match operator
- moving 1 base in a two element cigar
- move to start of read
- process right clipped cigar
- process left clipped cigar
- process cigar clipped on both ends
MDTaggingSuite:
- test adding MDTags over boundary
- test adding MDTags; reads span full contig
- test adding MDTags; reads start inside first fragment
- test adding MDTags; reads end inside last fragment
- test adding MDTags; reads start inside first fragment and end inside last fragment
- test adding MDTags; reads start and end in middle fragements
2019-05-15 14:55:51 WARN  BlockManager:66 - Putting block rdd_5_3 failed due to exception java.lang.Exception: Contig chr2 not found in reference map with keys: chr1.
2019-05-15 14:55:51 WARN  BlockManager:66 - Block rdd_5_3 could not be removed as it was not found on disk or in memory
2019-05-15 14:55:51 ERROR Executor:91 - Exception in task 3.0 in stage 2.0 (TID 11)
java.lang.Exception: Contig chr2 not found in reference map with keys: chr1
	at org.bdgenomics.adam.util.ReferenceContigMap$$anonfun$extract$1.apply(ReferenceContigMap.scala:63)
	at org.bdgenomics.adam.util.ReferenceContigMap$$anonfun$extract$1.apply(ReferenceContigMap.scala:63)
	at scala.collection.MapLike$class.getOrElse(MapLike.scala:128)
	at scala.collection.AbstractMap.getOrElse(Map.scala:59)
	at org.bdgenomics.adam.util.ReferenceContigMap.extract(ReferenceContigMap.scala:61)
	at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1$$anonfun$apply$2.apply(MDTagging.scala:76)
	at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1$$anonfun$apply$2.apply(MDTagging.scala:71)
	at scala.Option$WithFilter.map(Option.scala:207)
	at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1.apply(MDTagging.scala:71)
	at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1.apply(MDTagging.scala:69)
	at scala.collection.Iterator$$anon$11.next(Iterator.scala:410)
	at org.apache.spark.storage.memory.MemoryStore.putIterator(MemoryStore.scala:222)
	at org.apache.spark.storage.memory.MemoryStore.putIteratorAsValues(MemoryStore.scala:299)
	at org.apache.spark.storage.BlockManager$$anonfun$doPutIterator$1.apply(BlockManager.scala:1165)
	at org.apache.spark.storage.BlockManager$$anonfun$doPutIterator$1.apply(BlockManager.scala:1156)
	at org.apache.spark.storage.BlockManager.doPut(BlockManager.scala:1091)
	at org.apache.spark.storage.BlockManager.doPutIterator(BlockManager.scala:1156)
	at org.apache.spark.storage.BlockManager.getOrElseUpdate(BlockManager.scala:882)
	at org.apache.spark.rdd.RDD.getOrCompute(RDD.scala:335)
	at org.apache.spark.rdd.RDD.iterator(RDD.scala:286)
	at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90)
	at org.apache.spark.scheduler.Task.run(Task.scala:121)
	at org.apache.spark.executor.Executor$TaskRunner$$anonfun$10.apply(Executor.scala:408)
	at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1360)
	at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:414)
	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
	at java.lang.Thread.run(Thread.java:748)
2019-05-15 14:55:51 WARN  TaskSetManager:66 - Lost task 3.0 in stage 2.0 (TID 11, localhost, executor driver): java.lang.Exception: Contig chr2 not found in reference map with keys: chr1
	at org.bdgenomics.adam.util.ReferenceContigMap$$anonfun$extract$1.apply(ReferenceContigMap.scala:63)
	at org.bdgenomics.adam.util.ReferenceContigMap$$anonfun$extract$1.apply(ReferenceContigMap.scala:63)
	at scala.collection.MapLike$class.getOrElse(MapLike.scala:128)
	at scala.collection.AbstractMap.getOrElse(Map.scala:59)
	at org.bdgenomics.adam.util.ReferenceContigMap.extract(ReferenceContigMap.scala:61)
	at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1$$anonfun$apply$2.apply(MDTagging.scala:76)
	at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1$$anonfun$apply$2.apply(MDTagging.scala:71)
	at scala.Option$WithFilter.map(Option.scala:207)
	at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1.apply(MDTagging.scala:71)
	at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1.apply(MDTagging.scala:69)
	at scala.collection.Iterator$$anon$11.next(Iterator.scala:410)
	at org.apache.spark.storage.memory.MemoryStore.putIterator(MemoryStore.scala:222)
	at org.apache.spark.storage.memory.MemoryStore.putIteratorAsValues(MemoryStore.scala:299)
	at org.apache.spark.storage.BlockManager$$anonfun$doPutIterator$1.apply(BlockManager.scala:1165)
	at org.apache.spark.storage.BlockManager$$anonfun$doPutIterator$1.apply(BlockManager.scala:1156)
	at org.apache.spark.storage.BlockManager.doPut(BlockManager.scala:1091)
	at org.apache.spark.storage.BlockManager.doPutIterator(BlockManager.scala:1156)
	at org.apache.spark.storage.BlockManager.getOrElseUpdate(BlockManager.scala:882)
	at org.apache.spark.rdd.RDD.getOrCompute(RDD.scala:335)
	at org.apache.spark.rdd.RDD.iterator(RDD.scala:286)
	at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90)
	at org.apache.spark.scheduler.Task.run(Task.scala:121)
	at org.apache.spark.executor.Executor$TaskRunner$$anonfun$10.apply(Executor.scala:408)
	at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1360)
	at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:414)
	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
	at java.lang.Thread.run(Thread.java:748)

2019-05-15 14:55:51 ERROR TaskSetManager:70 - Task 3 in stage 2.0 failed 1 times; aborting job
- try realigning a read on a missing contig, stringency == STRICT
2019-05-15 14:55:52 WARN  MDTagging:190 - Caught exception when processing read chr2: java.lang.Exception: Contig chr2 not found in reference map with keys: chr1
- try realigning a read on a missing contig, stringency == LENIENT
FileExtensionsSuite:
- ends in gzip extension
- is a vcf extension
PhredUtilsSuite:
- convert low phred score to log and back
- convert high phred score to log and back
- convert overflowing phred score to log and back and clip
- convert negative zero log probability to phred and clip
- round trip log probabilities
SmithWatermanSuite:
- gather max position from simple scoring matrix
- gather max position from irregular scoring matrix
- gather max position from irregular scoring matrix with deletions
- score simple alignment with constant gap
- score irregular scoring matrix
- score irregular scoring matrix with indel
- can unroll cigars correctly
- execute simple trackback
- execute trackback with indel
- run end to end smith waterman for simple reads
- run end to end smith waterman for short sequences with indel
- run end to end smith waterman for longer sequences with snp
- run end to end smith waterman for longer sequences with short indel
- run end to end smith waterman for shorter sequence in longer sequence
- run end to end smith waterman for shorter sequence in longer sequence, with indel
- smithWaterman - simple alignment
FastaConverterSuite:
- find contig index
- convert a single record without naming information
- convert a single record with naming information
- convert single fasta sequence
- convert fasta with multiple sequences
- convert fasta with multiple sequences; short fragment
- convert reference fasta file
MdTagSuite:
- null md tag
- zero length md tag
- md tag with non-digit initial value
- md tag invalid base
- md tag, pure insertion
- md tag, pure insertion, test 2
- md tag pure insertion equality
- md tag equality and hashcode
- valid md tags
- get start of read with no mismatches or deletions
- get start of read with no mismatches, but with a deletion at the start
- get start of read with mismatches at the start
- get end of read with no mismatches or deletions
- check that mdtag and rich record return same end
- get end of read with no mismatches, but a deletion at end
- CIGAR with N operator
- CIGAR with multiple N operators
- CIGAR with P operators
- Get correct matches for mdtag with insertion
- Get correct matches for mdtag with mismatches and insertion
- Get correct matches for mdtag with insertion between mismatches
- Get correct matches for mdtag with intron between mismatches
- Get correct matches for mdtag with intron and deletion between mismatches
- Throw exception when number of deleted bases in mdtag disagrees with CIGAR
- Get correct matches for mdtag with mismatch, insertion and deletion
- Get correct matches for mdtag with mismatches, insertion and deletion
- Get correct matches for MDTag with mismatches and deletions
- Get correct matches base from MDTag and CIGAR with N
- get end of read with mismatches and a deletion at end
- get correct string out of mdtag with no mismatches
- get correct string out of mdtag with mismatches at start
- get correct string out of mdtag with deletion at end
- get correct string out of mdtag with mismatches at end
- get correct string out of complex mdtag
- check complex mdtag
- get gapped reference
- move a cigar alignment by two for a read
- rewrite alignment to all matches
- rewrite alignment to two mismatches followed by all matches
- rewrite alignment to include a deletion but otherwise all matches
- rewrite alignment to include an insertion at the start of the read but otherwise all matches
- create new md tag from read vs. reference, perfect match
- create new md tag from read vs. reference, perfect alignment match, 1 mismatch
- create new md tag from read vs. reference, alignment with deletion
- create new md tag from read vs. reference, alignment with insert
- handle '=' and 'X' operators
- CIGAR/MD tag mismatch should cause errors
GenomicDatasetSuite:
- processing a command that is the spark root directory should return an absolute path
- processing a command that is just a single word should do nothing
- processing a command should handle arguments that include spaces
- processing a command that is a single substitution should succeed
- processing a command that is multiple words should split the string
- process a command that is multiple words with a replacement
- process a command that is multiple words with multiple replacements
ParallelFileMergerSuite:
- cannot write both empty gzip block and cram eof
- buffer size must be non-negative
- get the size of several files
- block size must be positive and non-zero when trying to merge files
- must provide files to merge
- if two files are both below the block size, they should merge into one shard
- merge two files where one is greater than the block size
- merge a sharded sam file
- merge a sharded bam file
- merge a sharded cram file
- can't turn a negative index into a path
- generate a path from an index
IndelTableSuite:
- check for indels in a region with known indels
- check for indels in a contig that doesn't exist
- check for indels in a region without known indels
- build indel table from rdd of variants
SnpTableSuite:
- create an empty snp table
- create a snp table from variants on multiple contigs
- create a snp table from a larger set of variants
- perform lookups on multi-contig snp table
- perform lookups on larger snp table
RealignIndelsSuite:
- map reads to targets
- checking mapping to targets for artificial reads
- checking alternative consensus for artificial reads
- checking extraction of reference from reads
- checking realigned reads for artificial input
- checking realigned reads for artificial input with reference file
- checking realigned reads for artificial input using knowns
- checking realigned reads for artificial input using knowns and reads
- skip realigning reads if target is highly covered
- skip realignment if target is an insufficient LOD improvement
- realign reads to an insertion
- test mismatch quality scoring
- test mismatch quality scoring for no mismatches
- test mismatch quality scoring for offset
- test mismatch quality scoring with early exit
- test mismatch quality scoring after unpacking read
- we shouldn't try to realign a region with no target
- we shouldn't try to realign reads with no indel evidence
- test OP and OC tags
- realign a read with an insertion that goes off the end of the read
- if realigning a target doesn't improve the LOD, don't drop reads
- extract seq/qual from a read with no clipped bases
- extract seq/qual from a read with clipped bases at start
- extract seq/qual from a read with clipped bases at end
- if unclip is selected, don't drop base when extracting from a read with clipped bases
- get cigar and coordinates for read that spans indel, no clipped bases
- get cigar and coordinates for read that spans deletion, clipped bases at start
- get cigar and coordinates for read that falls wholly before insertion
- get cigar and coordinates for read that falls wholly after insertion
- get cigar and coordinates for read that falls wholly after deletion
- get cigar and coordinates for read that partially spans insertion, no clipped bases
- get cigar and coordinates for read that partially spans insertion, clipped bases at end
- get cigar and coordinates for read that partially spans insertion, clipped bases both ends
BaseQualityRecalibrationSuite:
- BQSR Test Input #1 w/ VCF Sites without caching
- BQSR Test Input #1 w/ VCF Sites with caching
- BQSR Test Input #1 w/ VCF Sites with serialized caching
DinucCovariateSuite:
- computing dinucleotide pairs for a single base sequence should return (N,N)
- compute dinucleotide pairs for a string of all valid bases
- compute dinucleotide pairs for a string with an N
- compute covariates for a read on the negative strand
- compute covariates for a read on the positive strand
SequenceDictionarySuite:
- Convert from sam sequence record and back
- Convert from SAM sequence dictionary file (with extra fields)
- merge into existing dictionary
- Convert from SAM sequence dictionary and back
- Can retrieve sequence by name
- SequenceDictionary's with same single element are equal
- SequenceDictionary's with same two elements are equals
- SequenceDictionary's with different elements are unequal
- SequenceDictionaries with same elements in different order are compatible
- isCompatible tests equality on overlap
- The addition + works correctly
- The append operation ++ works correctly
- ContainsRefName works correctly for different string types
- Apply on name works correctly for different String types
- convert from sam sequence record and back
- convert from sam sequence dictionary and back
- conversion to sam sequence dictionary has correct sort order
- load sequence dictionary from VCF file
- empty sequence dictionary must be empty
- test filter to reference name
- test filter to reference names
- test filter to reference name by function
GenomicPositionPartitionerSuite:
- partitions the UNMAPPED ReferencePosition into the top partition
- if we do not have a contig for a record, we throw an IAE
- partitioning into N pieces on M total sequence length, where N > M, results in M partitions
- correctly partitions a single dummy sequence into two pieces
- correctly counts cumulative lengths
- correctly partitions positions across two dummy sequences
- test that we can range partition ADAMRecords
- test that we can range partition ADAMRecords indexed by sample
- test that simple partitioning works okay on a reasonable set of ADAMRecords
- test indexed ReferencePosition partitioning works on a set of indexed ADAMRecords
CoverageSuite:
- Convert to coverage from valid Feature
- Convert to coverage from valid Feature with sampleId
- Convert to coverage from Feature with null/empty contigName fails with correct error
- Convert to coverage from Feature with no start/end position fails with correct error
- Convert to coverage from Feature with no score fails with correct error
InnerTreeRegionJoinSuite:
- Ensure same reference regions get passed together
- Overlapping reference regions
- Multiple reference regions do not throw exception
RichAlignmentRecordSuite:
- Unclipped Start
- Unclipped End
- tags contains optional fields
- read overlap unmapped read
- read overlap reference position
- read overlap same position different contig
VariantDatasetSuite:
- union two variant genomic datasets together
- round trip to parquet
- save and reload from partitioned parquet
- use broadcast join to pull down variants mapped to targets
- use right outer broadcast join to pull down variants mapped to targets
- use shuffle join to pull down variants mapped to targets
- use right outer shuffle join to pull down variants mapped to targets
- use left outer shuffle join to pull down variants mapped to targets
- use full outer shuffle join to pull down variants mapped to targets
- use shuffle join with group by to pull down variants mapped to targets
- use right outer shuffle join with group by to pull down variants mapped to targets
- convert back to variant contexts
- load parquet to sql, save, re-read from avro
- transform variants to contig genomic dataset
- transform variants to coverage genomic dataset
- transform variants to feature genomic dataset
- transform variants to fragment genomic dataset
- transform variants to read genomic dataset
- transform variants to genotype genomic dataset
- transform variants to variant context genomic dataset
- filter RDD bound variants to filters passed
- filter dataset bound variants to filters passed
- filter RDD bound variants by quality
- filter dataset bound variants by quality
- filter RDD bound variants by read depth
- filter dataset bound variants by read depth
- filter RDD bound variants by reference read depth
- filter dataset bound variants by reference read depth
- filter RDD bound single nucleotide variants
- filter dataset bound single nucleotide variants
- filter RDD bound multiple nucleotide variants
- filter dataset bound multiple nucleotide variants
- filter RDD bound indel variants
- filter dataset bound indel variants
- filter RDD bound variants to single nucleotide variants
- filter dataset bound variants to single nucleotide variants
- filter RDD bound variants to multiple nucleotide variants
- filter dataset bound variants to multiple nucleotide variants
- filter RDD bound variants to indel variants
- filter dataset bound variants to indel variants
- transform dataset via java API
Run completed in 6 minutes, 24 seconds.
Total number of tests run: 1146
Suites: completed 67, aborted 0
Tests: succeeded 1146, failed 0, canceled 0, ignored 5, pending 0
All tests passed.
[INFO] 
[INFO] <<< scoverage-maven-plugin:1.1.1:report (default-cli) < [scoverage]test @ adam-core-spark2_2.11 <<<
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:report (default-cli) @ adam-core-spark2_2.11 ---
[INFO] [scoverage] Generating cobertura XML report...
[INFO] [scoverage] Generating scoverage XML report...
[INFO] [scoverage] Generating scoverage HTML report...
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ADAM_2.11: APIs for Java, Python 0.27.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-apis-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-apis-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-apis-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-apis/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-apis-spark2_2.11 ---
[INFO] Modified 0 of 5 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-apis-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-apis/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-apis-spark2_2.11 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-apis/src/main/scala:-1: info: compiling
[INFO] Compiling 4 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-apis/target/2.11.12/classes at 1557957430692
[WARNING] warning: there were two feature warnings; re-run with -feature for details
[WARNING] one warning found
[INFO] prepare-compile in 0 s
[INFO] compile in 5 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-apis-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-apis-spark2_2.11 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-apis/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-apis-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 2 resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-apis-spark2_2.11 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-apis/src/test/java:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-apis/src/test/scala:-1: info: compiling
[INFO] Compiling 8 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-apis/target/2.11.12/test-classes at 1557957435878
[INFO] prepare-compile in 0 s
[INFO] compile in 3 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-apis-spark2_2.11 ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 7 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-apis/target/2.11.12/test-classes
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-apis-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-apis-spark2_2.11 ---
Discovery starting.
Discovery completed in 159 milliseconds.
Run starting. Expected test count is: 9
JavaADAMContextSuite:
2019-05-15 14:57:20 WARN  Utils:66 - Your hostname, research-jenkins-worker-08 resolves to a loopback address: 127.0.1.1; using 192.168.10.28 instead (on interface eth0)
2019-05-15 14:57:20 WARN  Utils:66 - Set SPARK_LOCAL_IP if you need to bind to another address
2019-05-15 14:57:21 WARN  NativeCodeLoader:62 - Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
- can read and write a small .SAM file
- loadIndexedBam with multiple ReferenceRegions
- can read and write a small FASTA file
- can read and write a small .SAM file as fragments
- can read and write a small .bed file as features
- can read and write a small .bed file as coverage
- can read and write a small .vcf as genotypes
- can read and write a small .vcf as variants
- can read a two bit file
Run completed in 10 seconds, 230 milliseconds.
Total number of tests run: 9
Suites: completed 2, aborted 0
Tests: succeeded 9, failed 0, canceled 0, ignored 0, pending 0
All tests passed.
[INFO] 
[INFO] >>> scoverage-maven-plugin:1.1.1:report (default-cli) > [scoverage]test @ adam-apis-spark2_2.11 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-apis-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-apis-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-apis-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-apis/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-apis-spark2_2.11 ---
[INFO] Modified 0 of 5 .scala files
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:pre-compile (default-cli) @ adam-apis-spark2_2.11 ---
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-apis-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-apis/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-apis-spark2_2.11 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-apis/src/main/scala:-1: info: compiling
[INFO] Compiling 4 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-apis/target/2.11.12/scoverage-classes at 1557957451497
[INFO] [info] Cleaning datadir [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-apis/target/scoverage-data]
[INFO] [info] Beginning coverage instrumentation
[INFO] [info] Instrumentation completed [184 statements]
[INFO] [info] Wrote instrumentation file [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-apis/target/scoverage-data/scoverage.coverage.xml]
[INFO] [info] Will write measurement data to [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-apis/target/scoverage-data]
[WARNING] warning: there were two feature warnings; re-run with -feature for details
[WARNING] one warning found
[INFO] prepare-compile in 0 s
[INFO] compile in 5 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-apis-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:post-compile (default-cli) @ adam-apis-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-apis-spark2_2.11 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-apis/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-apis-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 2 resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-apis-spark2_2.11 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-apis/src/test/java:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-apis/src/test/scala:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-apis/target/generated-test-sources/test-annotations:-1: info: compiling
[INFO] Compiling 8 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-apis/target/2.11.12/test-classes at 1557957456727
[INFO] prepare-compile in 0 s
[INFO] compile in 3 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-apis-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-apis-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-apis-spark2_2.11 ---
Discovery starting.
Discovery completed in 151 milliseconds.
Run starting. Expected test count is: 9
JavaADAMContextSuite:
2019-05-15 14:57:41 WARN  Utils:66 - Your hostname, research-jenkins-worker-08 resolves to a loopback address: 127.0.1.1; using 192.168.10.28 instead (on interface eth0)
2019-05-15 14:57:41 WARN  Utils:66 - Set SPARK_LOCAL_IP if you need to bind to another address
2019-05-15 14:57:41 WARN  NativeCodeLoader:62 - Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
- can read and write a small .SAM file
- loadIndexedBam with multiple ReferenceRegions
- can read and write a small FASTA file
- can read and write a small .SAM file as fragments
- can read and write a small .bed file as features
- can read and write a small .bed file as coverage
- can read and write a small .vcf as genotypes
- can read and write a small .vcf as variants
- can read a two bit file
Run completed in 10 seconds, 239 milliseconds.
Total number of tests run: 9
Suites: completed 2, aborted 0
Tests: succeeded 9, failed 0, canceled 0, ignored 0, pending 0
All tests passed.
[INFO] 
[INFO] <<< scoverage-maven-plugin:1.1.1:report (default-cli) < [scoverage]test @ adam-apis-spark2_2.11 <<<
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:report (default-cli) @ adam-apis-spark2_2.11 ---
[INFO] [scoverage] Generating cobertura XML report...
[INFO] [scoverage] Generating scoverage XML report...
[INFO] [scoverage] Generating scoverage HTML report...
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ADAM_2.11: CLI 0.27.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-cli-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-cli-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:timestamp-property (timestamp-property) @ adam-cli-spark2_2.11 ---
[INFO] 
[INFO] --- git-commit-id-plugin:2.2.2:revision (default) @ adam-cli-spark2_2.11 ---
[INFO] 
[INFO] --- templating-maven-plugin:1.0.0:filter-sources (filter-src) @ adam-cli-spark2_2.11 ---
[INFO] Coping files with filtering to temporary directory.
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 1 resource
[INFO] Copied 1 files to output directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-cli/target/generated-sources/java-templates
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-cli/target/generated-sources/java-templates added.
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-cli-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-cli/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-cli-spark2_2.11 ---
[INFO] Modified 0 of 31 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-cli-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-cli/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-cli-spark2_2.11 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-cli/target/generated-sources/java-templates:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-cli/src/main/scala:-1: info: compiling
[INFO] Compiling 18 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-cli/target/2.11.12/classes at 1557957473257
[WARNING] warning: there was one deprecation warning; re-run with -deprecation for details
[WARNING] one warning found
[INFO] prepare-compile in 0 s
[INFO] compile in 7 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-cli-spark2_2.11 ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 1 source file to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-cli/target/2.11.12/classes
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-cli-spark2_2.11 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-cli/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-cli-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 15 resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-cli-spark2_2.11 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-cli/src/test/scala:-1: info: compiling
[INFO] Compiling 14 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-cli/target/2.11.12/test-classes at 1557957480866
[INFO] prepare-compile in 0 s
[INFO] compile in 6 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-cli-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-cli-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-cli-spark2_2.11 ---
Discovery starting.
Discovery completed in 210 milliseconds.
Run starting. Expected test count is: 46
TransformFeaturesSuite:
2019-05-15 14:58:08 WARN  Utils:66 - Your hostname, research-jenkins-worker-08 resolves to a loopback address: 127.0.1.1; using 192.168.10.28 instead (on interface eth0)
2019-05-15 14:58:08 WARN  Utils:66 - Set SPARK_LOCAL_IP if you need to bind to another address
2019-05-15 14:58:08 WARN  NativeCodeLoader:62 - Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
- can convert a simple BED file
TransformVariantsSuite:
- save a file sorted by contig index
- save a lexicographically sorted file
ViewSuite:
- -f 0 -F 0 is a no-op
- no -f or -F args is a no-op
- -f 4: only unmapped reads
- -F 4: only mapped reads
- -f 4 -F 8: unmapped reads with mapped mates
- -f 12: unmapped reads with unmapped mates
- -g 12: reads that are unmapped or whose mate is unmapped
- -F 12: mapped reads with mapped mates
- -g 36: unmapped reads or reads with mate on negative strand
- -F 36: unmapped reads or reads with mate on negative strand
ADAM2FastaSuite:
- round trip FASTA to nucleotide contig fragments in ADAM format to FASTA
TransformFragmentsSuite:
- load queryname sorted sam and save as parquet
- cannot sort if not saving as sam
2019-05-15 14:58:21 WARN  TransformFragments:190 - If loading and saving as reads, consider using TransformAlignments instead.
- load reads as sam and save them sorted
- bin quality scores on reads
TransformGenotypesSuite:
- save a file sorted by contig index
- save a lexicographically sorted file
- transform VCF without nested annotations
- transform VCF with nested annotations
Reads2CoverageSuite:
- correctly calculates coverage from small sam file
AboutSuite:
- template variables have been replaced
- templated values are not empty
MergeShardsSuite:
- merge shards from unordered sam to unordered sam
- unordered sam to ordered sam
- merge sharded bam
- merge sharded cram
Fasta2ADAMSuite:
- can load fasta records after conversion
TransformAlignmentsSuite:
- unordered sam to unordered sam
- unordered sam to ordered sam
- unordered sam, to adam, to sam
- unordered sam, to adam, to ordered sam
- put quality scores into bins
- run region predicate
ADAMMainSuite:
- default command groups is non empty
- module provides default command groups
- inject default command groups when called via main
- command groups is empty when called via apply
- single command group
- add new command group to default command groups
- module restores default command groups when called via apply
- custom module with single command group
- custom module with new command group added to default command groups
Adam2FastqSuite:
2019-05-15 14:58:33 WARN  RDDBoundAlignmentRecordDataset:190 - Found 16 read names that don't occur exactly twice:
	1x:	16

Samples:
	SRR062634.16445865
	SRR062634.9119161
	SRR062634.17190076
	SRR062634.17969132
	SRR062634.7301099
	SRR062634.2087100
	SRR062634.20911784
	SRR062634.16769670
	SRR062634.18958430
	SRR062634.12099057
	SRR062634.12606172
	SRR062634.14985224
	SRR062634.10448889
	SRR062634.4789722
	SRR062634.3203184
	SRR062634.17698657
- convert SAM to paired FASTQ
Run completed in 26 seconds, 271 milliseconds.
Total number of tests run: 46
Suites: completed 14, aborted 0
Tests: succeeded 46, failed 0, canceled 0, ignored 0, pending 0
All tests passed.
[INFO] 
[INFO] >>> scoverage-maven-plugin:1.1.1:report (default-cli) > [scoverage]test @ adam-cli-spark2_2.11 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-cli-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-cli-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:timestamp-property (timestamp-property) @ adam-cli-spark2_2.11 ---
[INFO] 
[INFO] --- git-commit-id-plugin:2.2.2:revision (default) @ adam-cli-spark2_2.11 ---
[INFO] 
[INFO] --- templating-maven-plugin:1.0.0:filter-sources (filter-src) @ adam-cli-spark2_2.11 ---
[INFO] Coping files with filtering to temporary directory.
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 1 resource
[INFO] No files needs to be copied to output directory. Up to date: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-cli/target/generated-sources/java-templates
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-cli/target/generated-sources/java-templates added.
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-cli-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-cli/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-cli-spark2_2.11 ---
[INFO] Modified 0 of 31 .scala files
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:pre-compile (default-cli) @ adam-cli-spark2_2.11 ---
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-cli-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-cli/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-cli-spark2_2.11 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-cli/target/generated-sources/java-templates:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-cli/src/main/scala:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-cli/target/generated-sources/annotations:-1: info: compiling
[INFO] Compiling 18 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-cli/target/2.11.12/scoverage-classes at 1557957515024
[INFO] [info] Cleaning datadir [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-cli/target/scoverage-data]
[INFO] [info] Beginning coverage instrumentation
[INFO] [info] Instrumentation completed [1439 statements]
[INFO] [info] Wrote instrumentation file [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-cli/target/scoverage-data/scoverage.coverage.xml]
[INFO] [info] Will write measurement data to [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-cli/target/scoverage-data]
[WARNING] warning: there was one deprecation warning; re-run with -deprecation for details
[WARNING] one warning found
[INFO] prepare-compile in 0 s
[INFO] compile in 8 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-cli-spark2_2.11 ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 1 source file to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-cli/target/2.11.12/scoverage-classes
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:post-compile (default-cli) @ adam-cli-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-cli-spark2_2.11 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-cli/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-cli-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 15 resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-cli-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-cli-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-cli-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-cli-spark2_2.11 ---
Discovery starting.
Discovery completed in 207 milliseconds.
Run starting. Expected test count is: 46
TransformFeaturesSuite:
2019-05-15 14:58:44 WARN  Utils:66 - Your hostname, research-jenkins-worker-08 resolves to a loopback address: 127.0.1.1; using 192.168.10.28 instead (on interface eth0)
2019-05-15 14:58:44 WARN  Utils:66 - Set SPARK_LOCAL_IP if you need to bind to another address
2019-05-15 14:58:45 WARN  NativeCodeLoader:62 - Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
- can convert a simple BED file
TransformVariantsSuite:
- save a file sorted by contig index
- save a lexicographically sorted file
ViewSuite:
- -f 0 -F 0 is a no-op
- no -f or -F args is a no-op
- -f 4: only unmapped reads
- -F 4: only mapped reads
- -f 4 -F 8: unmapped reads with mapped mates
- -f 12: unmapped reads with unmapped mates
- -g 12: reads that are unmapped or whose mate is unmapped
- -F 12: mapped reads with mapped mates
- -g 36: unmapped reads or reads with mate on negative strand
- -F 36: unmapped reads or reads with mate on negative strand
ADAM2FastaSuite:
- round trip FASTA to nucleotide contig fragments in ADAM format to FASTA
TransformFragmentsSuite:
- load queryname sorted sam and save as parquet
- cannot sort if not saving as sam
2019-05-15 14:58:58 WARN  TransformFragments:190 - If loading and saving as reads, consider using TransformAlignments instead.
- load reads as sam and save them sorted
- bin quality scores on reads
TransformGenotypesSuite:
- save a file sorted by contig index
- save a lexicographically sorted file
- transform VCF without nested annotations
- transform VCF with nested annotations
Reads2CoverageSuite:
- correctly calculates coverage from small sam file
AboutSuite:
- template variables have been replaced
- templated values are not empty
MergeShardsSuite:
- merge shards from unordered sam to unordered sam
- unordered sam to ordered sam
- merge sharded bam
- merge sharded cram
Fasta2ADAMSuite:
- can load fasta records after conversion
TransformAlignmentsSuite:
- unordered sam to unordered sam
- unordered sam to ordered sam
- unordered sam, to adam, to sam
- unordered sam, to adam, to ordered sam
- put quality scores into bins
- run region predicate
ADAMMainSuite:
- default command groups is non empty
- module provides default command groups
- inject default command groups when called via main
- command groups is empty when called via apply
- single command group
- add new command group to default command groups
- module restores default command groups when called via apply
- custom module with single command group
- custom module with new command group added to default command groups
Adam2FastqSuite:
2019-05-15 14:59:10 WARN  RDDBoundAlignmentRecordDataset:190 - Found 16 read names that don't occur exactly twice:
	1x:	16

Samples:
	SRR062634.16445865
	SRR062634.9119161
	SRR062634.17190076
	SRR062634.17969132
	SRR062634.7301099
	SRR062634.2087100
	SRR062634.20911784
	SRR062634.16769670
	SRR062634.18958430
	SRR062634.12099057
	SRR062634.12606172
	SRR062634.14985224
	SRR062634.10448889
	SRR062634.4789722
	SRR062634.3203184
	SRR062634.17698657
- convert SAM to paired FASTQ
Run completed in 27 seconds, 404 milliseconds.
Total number of tests run: 46
Suites: completed 14, aborted 0
Tests: succeeded 46, failed 0, canceled 0, ignored 0, pending 0
All tests passed.
[INFO] 
[INFO] <<< scoverage-maven-plugin:1.1.1:report (default-cli) < [scoverage]test @ adam-cli-spark2_2.11 <<<
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:report (default-cli) @ adam-cli-spark2_2.11 ---
[INFO] [scoverage] Generating cobertura XML report...
[INFO] [scoverage] Generating scoverage XML report...
[INFO] [scoverage] Generating scoverage HTML report...
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ADAM_2.11: Assembly 0.27.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-assembly-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-assembly-spark2_2.11 ---
[INFO] 
[INFO] --- git-commit-id-plugin:2.2.2:revision (default) @ adam-assembly-spark2_2.11 ---
[INFO] 
[INFO] --- templating-maven-plugin:1.0.0:filter-sources (filter-src) @ adam-assembly-spark2_2.11 ---
[INFO] Request to add '/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-assembly/src/main/java-templates' folder. Not added since it does not exist.
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-assembly-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-assembly/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-assembly-spark2_2.11 ---
[INFO] Modified 0 of 1 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-assembly-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-assembly/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-assembly-spark2_2.11 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-assembly/src/main/scala:-1: info: compiling
[INFO] Compiling 1 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-assembly/target/2.11.12/classes at 1557957553090
[INFO] prepare-compile in 0 s
[INFO] compile in 1 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-assembly-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-assembly-spark2_2.11 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-assembly/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-assembly-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-assembly/src/test/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-assembly-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-assembly-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-assembly-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] >>> scoverage-maven-plugin:1.1.1:report (default-cli) > [scoverage]test @ adam-assembly-spark2_2.11 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-assembly-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-assembly-spark2_2.11 ---
[INFO] 
[INFO] --- git-commit-id-plugin:2.2.2:revision (default) @ adam-assembly-spark2_2.11 ---
[INFO] 
[INFO] --- templating-maven-plugin:1.0.0:filter-sources (filter-src) @ adam-assembly-spark2_2.11 ---
[INFO] Request to add '/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-assembly/src/main/java-templates' folder. Not added since it does not exist.
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-assembly-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-assembly/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-assembly-spark2_2.11 ---
[INFO] Modified 0 of 1 .scala files
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:pre-compile (default-cli) @ adam-assembly-spark2_2.11 ---
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-assembly-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-assembly/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-assembly-spark2_2.11 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-assembly/src/main/scala:-1: info: compiling
[INFO] Compiling 1 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-assembly/target/2.11.12/scoverage-classes at 1557957554998
[INFO] [info] Cleaning datadir [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-assembly/target/scoverage-data]
[INFO] [info] Beginning coverage instrumentation
[INFO] [info] Instrumentation completed [0 statements]
[INFO] [info] Wrote instrumentation file [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-assembly/target/scoverage-data/scoverage.coverage.xml]
[INFO] [info] Will write measurement data to [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-assembly/target/scoverage-data]
[INFO] prepare-compile in 0 s
[INFO] compile in 1 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-assembly-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:post-compile (default-cli) @ adam-assembly-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-assembly-spark2_2.11 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-assembly/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-assembly-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-assembly/src/test/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-assembly-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-assembly-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-assembly-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] <<< scoverage-maven-plugin:1.1.1:report (default-cli) < [scoverage]test @ adam-assembly-spark2_2.11 <<<
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:report (default-cli) @ adam-assembly-spark2_2.11 ---
[INFO] [scoverage] Generating cobertura XML report...
[INFO] [scoverage] Generating scoverage XML report...
[INFO] [scoverage] Generating scoverage HTML report...
[INFO] [scoverage] Generating aggregated cobertura XML report...
[INFO] [scoverage] Generating aggregated scoverage XML report...
[INFO] [scoverage] Generating aggregated scoverage HTML report...
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ADAM_2.11 0.27.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- coveralls-maven-plugin:4.3.0:report (default-cli) @ adam-parent-spark2_2.11 ---
[INFO] Starting Coveralls job for jenkins (2992 / https://amplab.cs.berkeley.edu/jenkins/job/ADAM-prb/HADOOP_VERSION=2.7.5,SCALAVER=2.11,SPARK_VERSION=2.4.3,label=ubuntu/2992/)
[INFO] Using repository token <secret>
[INFO] Git commit 646d138 in travis-spark-2.4-scala-2.12
[INFO] Writing Coveralls data to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/target/coveralls.json...
[INFO] Processing coverage report from /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/target/cobertura.xml
[INFO] Successfully wrote Coveralls data in 473ms
[INFO] Gathered code coverage metrics for 143 source files with 36840 lines of code:
[INFO] - 8546 relevant lines
[INFO] - 6741 covered lines
[INFO] - 1805 missed lines
[INFO] Submitting Coveralls data to API
[INFO] Successfully submitted Coveralls data in 953ms for Job #2992.2
[INFO] https://coveralls.io/jobs/48544864
[INFO] *** It might take hours for Coveralls to update the actual coverage numbers for a job
[INFO]     If you see question marks in the report, please be patient
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO] 
[INFO] ADAM_2.11 .......................................... SUCCESS [  1.770 s]
[INFO] ADAM_2.11: Shader workaround ....................... SUCCESS [  4.327 s]
[INFO] ADAM_2.11: Avro-to-Dataset codegen utils ........... SUCCESS [  9.301 s]
[INFO] ADAM_2.11: Core .................................... SUCCESS [14:37 min]
[INFO] ADAM_2.11: APIs for Java, Python ................... SUCCESS [ 41.566 s]
[INFO] ADAM_2.11: CLI ..................................... SUCCESS [01:20 min]
[INFO] ADAM_2.11: Assembly ................................ SUCCESS [  9.203 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESS
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 17:15 min
[INFO] Finished at: 2019-05-15T14:59:23-07:00
[INFO] Final Memory: 95M/1478M
[INFO] ------------------------------------------------------------------------

# if those pass, build the distribution package
mvn -U \
    -P distribution \
    package \
    -DskipTests \
    -Dhadoop.version=${HADOOP_VERSION} \
    -DargLine=${ADAM_MVN_TMP_DIR}
+ mvn -U -P distribution package -DskipTests -Dhadoop.version=2.7.5 -DargLine=/tmp/adamTestMvnEoU0t8M
Java HotSpot(TM) 64-Bit Server VM warning: ignoring option MaxPermSize=1g; support was removed in 8.0
[INFO] Scanning for projects...
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Build Order:
[INFO] 
[INFO] ADAM_2.11
[INFO] ADAM_2.11: Shader workaround
[INFO] ADAM_2.11: Avro-to-Dataset codegen utils
[INFO] ADAM_2.11: Core
[INFO] ADAM_2.11: APIs for Java, Python
[INFO] ADAM_2.11: CLI
[INFO] ADAM_2.11: Assembly
[INFO] ADAM_2.11: Distribution
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ADAM_2.11 0.27.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-parent-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-parent-spark2_2.11 ---
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-parent-spark2_2.11 ---
[INFO] Modified 0 of 241 .scala files
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-parent-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-parent-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-source-plugin:3.0.1:jar-no-fork (attach-sources) @ adam-parent-spark2_2.11 ---
[INFO] 
[INFO] --- maven-javadoc-plugin:3.1.0:jar (attach-javadoc) @ adam-parent-spark2_2.11 ---
[INFO] 
[INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ adam-parent-spark2_2.11 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-parent-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-parent-spark2_2.11 ---
[INFO] 
[INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ adam-parent-spark2_2.11 <<<
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ adam-parent-spark2_2.11 ---
[INFO] No source files found
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ADAM_2.11: Shader workaround 0.27.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-shade-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-shade-spark2_2.11 ---
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-shade-spark2_2.11 ---
[INFO] Modified 0 of 0 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-shade-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-shade/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-shade-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-shade-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- plexus-component-metadata:1.5.5:generate-metadata (default) @ adam-shade-spark2_2.11 ---
[INFO] Discovered 1 component descriptors(s)
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-shade-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-shade/src/test/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-shade-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-shade-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-shade-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- maven-jar-plugin:3.1.2:jar (default-jar) @ adam-shade-spark2_2.11 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-shade/target/adam-shade-spark2_2.11-0.27.0-SNAPSHOT.jar
[INFO] 
[INFO] --- maven-source-plugin:3.0.1:jar-no-fork (attach-sources) @ adam-shade-spark2_2.11 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-shade/target/adam-shade-spark2_2.11-0.27.0-SNAPSHOT-sources.jar
[INFO] 
[INFO] --- maven-javadoc-plugin:3.1.0:jar (attach-javadoc) @ adam-shade-spark2_2.11 ---
[INFO] 
Loading source files for package org.bdgenomics.adam.shade...
Constructing Javadoc information...
Standard Doclet version 1.8.0_191
Building tree for all the packages and classes...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-shade/target/apidocs/org/bdgenomics/adam/shade/ParquetAvroWorkaroundShader.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-shade/target/apidocs/org/bdgenomics/adam/shade/package-frame.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-shade/target/apidocs/org/bdgenomics/adam/shade/package-summary.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-shade/target/apidocs/org/bdgenomics/adam/shade/package-tree.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-shade/target/apidocs/constant-values.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-shade/target/apidocs/org/bdgenomics/adam/shade/class-use/ParquetAvroWorkaroundShader.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-shade/target/apidocs/org/bdgenomics/adam/shade/package-use.html...
Building index for all the packages and classes...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-shade/target/apidocs/overview-tree.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-shade/target/apidocs/index-all.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-shade/target/apidocs/deprecated-list.html...
Building index for all classes...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-shade/target/apidocs/allclasses-frame.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-shade/target/apidocs/allclasses-noframe.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-shade/target/apidocs/index.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-shade/target/apidocs/help-doc.html...
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-shade/target/adam-shade-spark2_2.11-0.27.0-SNAPSHOT-javadoc.jar
[INFO] 
[INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ adam-shade-spark2_2.11 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-shade-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-shade-spark2_2.11 ---
[INFO] 
[INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ adam-shade-spark2_2.11 <<<
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ adam-shade-spark2_2.11 ---
model contains 6 documentable templates
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-shade/target/adam-shade-spark2_2.11-0.27.0-SNAPSHOT-javadoc.jar
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ADAM_2.11: Avro-to-Dataset codegen utils 0.27.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-codegen-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-codegen-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-codegen-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-codegen/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-codegen-spark2_2.11 ---
[INFO] Modified 0 of 4 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-codegen-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-codegen/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-codegen-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-codegen-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-codegen-spark2_2.11 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-codegen/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-codegen-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-codegen/src/test/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-codegen-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-codegen-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-codegen-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-codegen-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- maven-jar-plugin:3.1.2:jar (default-jar) @ adam-codegen-spark2_2.11 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-codegen/target/adam-codegen-spark2_2.11-0.27.0-SNAPSHOT.jar
[INFO] 
[INFO] --- maven-source-plugin:3.0.1:jar-no-fork (attach-sources) @ adam-codegen-spark2_2.11 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-codegen/target/adam-codegen-spark2_2.11-0.27.0-SNAPSHOT-sources.jar
[INFO] 
[INFO] --- maven-javadoc-plugin:3.1.0:jar (attach-javadoc) @ adam-codegen-spark2_2.11 ---
[INFO] 
[INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ adam-codegen-spark2_2.11 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-codegen-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-codegen-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-codegen-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-codegen/src/main/scala added.
[INFO] 
[INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ adam-codegen-spark2_2.11 <<<
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ adam-codegen-spark2_2.11 ---
model contains 11 documentable templates
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-codegen/target/adam-codegen-spark2_2.11-0.27.0-SNAPSHOT-javadoc.jar
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ADAM_2.11: Core 0.27.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-core-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-core-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-core-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/main/scala added.
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/target/generated-sources/src/main/scala added.
[INFO] 
[INFO] --- exec-maven-plugin:1.5.0:java (generate-scala-products) @ adam-core-spark2_2.11 ---
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] 
[INFO] --- exec-maven-plugin:1.5.0:java (generate-scala-projection-fields) @ adam-core-spark2_2.11 ---
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-core-spark2_2.11 ---
[INFO] Modified 2 of 199 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-core-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-core-spark2_2.11 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/main/java:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/main/scala:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/target/generated-sources/src/main/scala:-1: info: compiling
[INFO] Compiling 136 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/target/2.11.12/classes at 1557957587852
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicDataset.scala:3099: warning: no valid targets for annotation on value uTag - it is discarded unused. You may specify targets with meta-annotations, e.g. @(transient @getter)
[WARNING]   @transient val uTag: TypeTag[U]
[WARNING]    ^
[WARNING] warning: there were 84 deprecation warnings; re-run with -deprecation for details
[WARNING] warning: there were 5 feature warnings; re-run with -feature for details
[WARNING] three warnings found
[INFO] prepare-compile in 0 s
[INFO] compile in 29 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-core-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-core-spark2_2.11 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-core-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 150 resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-core-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-core-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-core-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-core-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- maven-jar-plugin:3.1.2:jar (default-jar) @ adam-core-spark2_2.11 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/target/adam-core-spark2_2.11-0.27.0-SNAPSHOT.jar
[INFO] 
[INFO] --- maven-source-plugin:3.0.1:jar-no-fork (attach-sources) @ adam-core-spark2_2.11 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/target/adam-core-spark2_2.11-0.27.0-SNAPSHOT-sources.jar
[INFO] 
[INFO] --- maven-javadoc-plugin:3.1.0:jar (attach-javadoc) @ adam-core-spark2_2.11 ---
[INFO] The goal 'org.apache.maven.plugins:maven-javadoc-plugin:3.1.0:javadoc' has not been previously called for the module: 'org.bdgenomics.adam:adam-codegen-spark2_2.11:jar:0.27.0-SNAPSHOT'. Trying to invoke it...
Java HotSpot(TM) 64-Bit Server VM warning: ignoring option MaxPermSize=1g; support was removed in 8.0
[WARNING] Creating fake javadoc directory to prevent repeated invocations: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-codegen/target/apidocs
[ERROR] Error fetching link: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-codegen/target/apidocs. Ignored it.
[INFO] 
Loading source files for package org.bdgenomics.adam.io...
Loading source files for package org.apache.parquet.avro...
Constructing Javadoc information...
Standard Doclet version 1.8.0_191
Building tree for all the packages and classes...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/FastqInputFormat.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/FastqRecordReader.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/InterleavedFastqInputFormat.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/SingleFastqInputFormat.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/target/apidocs/org/apache/parquet/avro/AvroSchemaConverter.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/target/apidocs/overview-frame.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/target/apidocs/org/apache/parquet/avro/package-frame.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/target/apidocs/org/apache/parquet/avro/package-summary.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/target/apidocs/org/apache/parquet/avro/package-tree.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/package-frame.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/package-summary.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/package-tree.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/target/apidocs/constant-values.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/class-use/FastqRecordReader.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/class-use/FastqInputFormat.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/class-use/InterleavedFastqInputFormat.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/class-use/SingleFastqInputFormat.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/target/apidocs/org/apache/parquet/avro/class-use/AvroSchemaConverter.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/target/apidocs/org/apache/parquet/avro/package-use.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/package-use.html...
Building index for all the packages and classes...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/target/apidocs/overview-tree.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/target/apidocs/index-all.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/target/apidocs/deprecated-list.html...
Building index for all classes...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/target/apidocs/allclasses-frame.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/target/apidocs/allclasses-noframe.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/target/apidocs/index.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/target/apidocs/overview-summary.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/target/apidocs/help-doc.html...
6 warnings
[WARNING] Javadoc Warnings
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/main/java/org/bdgenomics/adam/io/FastqRecordReader.java:235: warning: no @param for codec
[WARNING] protected final int positionAtFirstRecord(final FSDataInputStream stream,
[WARNING] ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/main/java/org/bdgenomics/adam/io/FastqRecordReader.java:235: warning: no @return
[WARNING] protected final int positionAtFirstRecord(final FSDataInputStream stream,
[WARNING] ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/main/java/org/bdgenomics/adam/io/FastqRecordReader.java:235: warning: no @throws for java.io.IOException
[WARNING] protected final int positionAtFirstRecord(final FSDataInputStream stream,
[WARNING] ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/main/java/org/bdgenomics/adam/io/FastqRecordReader.java:389: warning: no @throws for java.io.IOException
[WARNING] protected final boolean lowLevelFastqRead(final Text readName, final Text value)
[WARNING] ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/main/java/org/bdgenomics/adam/io/FastqRecordReader.java:431: warning: no @throws for java.io.IOException
[WARNING] abstract protected boolean next(Text value) throws IOException;
[WARNING] ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/main/java/org/bdgenomics/adam/io/FastqRecordReader.java:154: warning: no @throws for java.io.IOException
[WARNING] protected FastqRecordReader(final Configuration conf,
[WARNING] ^
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/target/adam-core-spark2_2.11-0.27.0-SNAPSHOT-javadoc.jar
[INFO] 
[INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ adam-core-spark2_2.11 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-core-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-core-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-core-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/main/scala added.
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/target/generated-sources/src/main/scala added.
[INFO] 
[INFO] --- exec-maven-plugin:1.5.0:java (generate-scala-products) @ adam-core-spark2_2.11 ---
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] 
[INFO] --- exec-maven-plugin:1.5.0:java (generate-scala-projection-fields) @ adam-core-spark2_2.11 ---
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] 
[INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ adam-core-spark2_2.11 <<<
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ adam-core-spark2_2.11 ---
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverter.scala:230: warning: discarding unmoored doc comment
    /**
    ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordDataset.scala:803: warning: Octal escape literals are deprecated, use \u0001 instead.
      binaryCodec.writeBytes("BAM\001".getBytes())
                                 ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rich/RichCigar.scala:43: warning: discarding unmoored doc comment
    /**
    ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicDataset.scala:3099: warning: no valid targets for annotation on value uTag - it is discarded unused. You may specify targets with meta-annotations, e.g. @(transient @getter)
  @transient val uTag: TypeTag[U]
   ^
warning: there were 5 feature warnings; re-run with -feature for details
model contains 276 documentable templates
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/util/AttributeUtils.scala:70: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/projections/Projection.scala:45: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/contig/NucleotideContigFragmentDataset.scala:365: warning: Could not find any member to link for "UnsupportedOperationException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala:1339: warning: Could not find any member to link for "FileNotFoundException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala:1368: warning: Could not find any member to link for "FileNotFoundException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala:1388: warning: Could not find any member to link for "FileNotFoundException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicPartitioners.scala:75: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicPartitioners.scala:178: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala:456: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala:3085: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala:411: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicDataset.scala:755: warning: Variable x undefined in comment for method pipe in trait GenomicDataset
   * Files are substituted in to the command with a $x syntax. E.g., to invoke
                                                     ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicDataset.scala:756: warning: Variable 0 undefined in comment for method pipe in trait GenomicDataset
   * a command that uses the first file from the files Seq, use $0. To access
                                                                 ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicDataset.scala:757: warning: Variable root undefined in comment for method pipe in trait GenomicDataset
   * the path to the directory where the files are copied, use $root.
                                                                ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/models/ReadGroupDictionary.scala:47: warning: Could not find any member to link for "IllegalArgumentException".
/**
^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/models/Alphabet.scala:44: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala:258: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala:242: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala:426: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala:336: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
25 warnings found
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/target/adam-core-spark2_2.11-0.27.0-SNAPSHOT-javadoc.jar
[INFO] 
[INFO] --- maven-jar-plugin:3.1.2:test-jar (default) @ adam-core-spark2_2.11 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-core/target/adam-core-spark2_2.11-0.27.0-SNAPSHOT-tests.jar
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ADAM_2.11: APIs for Java, Python 0.27.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-apis-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-apis-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-apis-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-apis/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-apis-spark2_2.11 ---
[INFO] Modified 0 of 5 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-apis-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-apis/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-apis-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-apis-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-apis-spark2_2.11 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-apis/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-apis-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 2 resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-apis-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-apis-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-apis-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-apis-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- maven-jar-plugin:3.1.2:jar (default-jar) @ adam-apis-spark2_2.11 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-apis/target/adam-apis-spark2_2.11-0.27.0-SNAPSHOT.jar
[INFO] 
[INFO] --- maven-source-plugin:3.0.1:jar-no-fork (attach-sources) @ adam-apis-spark2_2.11 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-apis/target/adam-apis-spark2_2.11-0.27.0-SNAPSHOT-sources.jar
[INFO] 
[INFO] --- maven-javadoc-plugin:3.1.0:jar (attach-javadoc) @ adam-apis-spark2_2.11 ---
[INFO] 
[INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ adam-apis-spark2_2.11 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-apis-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-apis-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-apis-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-apis/src/main/scala added.
[INFO] 
[INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ adam-apis-spark2_2.11 <<<
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ adam-apis-spark2_2.11 ---
warning: there were two feature warnings; re-run with -feature for details
model contains 124 documentable templates
one warning found
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-apis/target/adam-apis-spark2_2.11-0.27.0-SNAPSHOT-javadoc.jar
[INFO] 
[INFO] --- maven-jar-plugin:3.1.2:test-jar (default) @ adam-apis-spark2_2.11 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-apis/target/adam-apis-spark2_2.11-0.27.0-SNAPSHOT-tests.jar
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ADAM_2.11: CLI 0.27.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-cli-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-cli-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:timestamp-property (timestamp-property) @ adam-cli-spark2_2.11 ---
[INFO] 
[INFO] --- git-commit-id-plugin:2.2.2:revision (default) @ adam-cli-spark2_2.11 ---
[INFO] 
[INFO] --- templating-maven-plugin:1.0.0:filter-sources (filter-src) @ adam-cli-spark2_2.11 ---
[INFO] Coping files with filtering to temporary directory.
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 1 resource
[INFO] No files needs to be copied to output directory. Up to date: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-cli/target/generated-sources/java-templates
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-cli/target/generated-sources/java-templates added.
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-cli-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-cli/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-cli-spark2_2.11 ---
[INFO] Modified 0 of 31 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-cli-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-cli/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-cli-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-cli-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-cli-spark2_2.11 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-cli/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-cli-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 15 resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-cli-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-cli-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-cli-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-cli-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- maven-jar-plugin:3.1.2:jar (default-jar) @ adam-cli-spark2_2.11 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-cli/target/adam-cli-spark2_2.11-0.27.0-SNAPSHOT.jar
[INFO] 
[INFO] --- maven-source-plugin:3.0.1:jar-no-fork (attach-sources) @ adam-cli-spark2_2.11 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-cli/target/adam-cli-spark2_2.11-0.27.0-SNAPSHOT-sources.jar
[INFO] 
[INFO] --- maven-javadoc-plugin:3.1.0:jar (attach-javadoc) @ adam-cli-spark2_2.11 ---
[INFO] The goal 'org.apache.maven.plugins:maven-javadoc-plugin:3.1.0:javadoc' has not been previously called for the module: 'org.bdgenomics.adam:adam-apis-spark2_2.11:jar:0.27.0-SNAPSHOT'. Trying to invoke it...
Java HotSpot(TM) 64-Bit Server VM warning: ignoring option MaxPermSize=1g; support was removed in 8.0
[WARNING] Creating fake javadoc directory to prevent repeated invocations: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-apis/target/apidocs
[ERROR] Error fetching link: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-apis/target/apidocs. Ignored it.
[INFO] 
Loading source files for package org.bdgenomics.adam.cli...
Constructing Javadoc information...
Standard Doclet version 1.8.0_191
Building tree for all the packages and classes...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-cli/target/apidocs/org/bdgenomics/adam/cli/About.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-cli/target/apidocs/org/bdgenomics/adam/cli/package-frame.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-cli/target/apidocs/org/bdgenomics/adam/cli/package-summary.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-cli/target/apidocs/org/bdgenomics/adam/cli/package-tree.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-cli/target/apidocs/constant-values.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-cli/target/apidocs/org/bdgenomics/adam/cli/class-use/About.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-cli/target/apidocs/org/bdgenomics/adam/cli/package-use.html...
Building index for all the packages and classes...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-cli/target/apidocs/overview-tree.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-cli/target/apidocs/index-all.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-cli/target/apidocs/deprecated-list.html...
Building index for all classes...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-cli/target/apidocs/allclasses-frame.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-cli/target/apidocs/allclasses-noframe.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-cli/target/apidocs/index.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-cli/target/apidocs/help-doc.html...
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-cli/target/adam-cli-spark2_2.11-0.27.0-SNAPSHOT-javadoc.jar
[INFO] 
[INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ adam-cli-spark2_2.11 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-cli-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-cli-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:timestamp-property (timestamp-property) @ adam-cli-spark2_2.11 ---
[INFO] 
[INFO] --- git-commit-id-plugin:2.2.2:revision (default) @ adam-cli-spark2_2.11 ---
[INFO] 
[INFO] --- templating-maven-plugin:1.0.0:filter-sources (filter-src) @ adam-cli-spark2_2.11 ---
[INFO] Coping files with filtering to temporary directory.
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 1 resource
[INFO] No files needs to be copied to output directory. Up to date: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-cli/target/generated-sources/java-templates
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-cli/target/generated-sources/java-templates added.
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-cli-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-cli/src/main/scala added.
[INFO] 
[INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ adam-cli-spark2_2.11 <<<
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ adam-cli-spark2_2.11 ---
model contains 55 documentable templates
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-cli/target/adam-cli-spark2_2.11-0.27.0-SNAPSHOT-javadoc.jar
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ADAM_2.11: Assembly 0.27.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-assembly-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-assembly-spark2_2.11 ---
[INFO] 
[INFO] --- git-commit-id-plugin:2.2.2:revision (default) @ adam-assembly-spark2_2.11 ---
[INFO] 
[INFO] --- templating-maven-plugin:1.0.0:filter-sources (filter-src) @ adam-assembly-spark2_2.11 ---
[INFO] Request to add '/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-assembly/src/main/java-templates' folder. Not added since it does not exist.
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-assembly-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-assembly/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-assembly-spark2_2.11 ---
[INFO] Modified 0 of 1 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-assembly-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-assembly/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-assembly-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-assembly-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-assembly-spark2_2.11 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-assembly/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-assembly-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-assembly/src/test/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-assembly-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-assembly-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-assembly-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- maven-jar-plugin:3.1.2:jar (default-jar) @ adam-assembly-spark2_2.11 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-assembly/target/adam-assembly-spark2_2.11-0.27.0-SNAPSHOT.jar
[INFO] 
[INFO] --- maven-source-plugin:3.0.1:jar-no-fork (attach-sources) @ adam-assembly-spark2_2.11 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-assembly/target/adam-assembly-spark2_2.11-0.27.0-SNAPSHOT-sources.jar
[INFO] 
[INFO] --- maven-javadoc-plugin:3.1.0:jar (attach-javadoc) @ adam-assembly-spark2_2.11 ---
[INFO] 
[INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ adam-assembly-spark2_2.11 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-assembly-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-assembly-spark2_2.11 ---
[INFO] 
[INFO] --- git-commit-id-plugin:2.2.2:revision (default) @ adam-assembly-spark2_2.11 ---
[INFO] 
[INFO] --- templating-maven-plugin:1.0.0:filter-sources (filter-src) @ adam-assembly-spark2_2.11 ---
[INFO] Request to add '/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-assembly/src/main/java-templates' folder. Not added since it does not exist.
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-assembly-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-assembly/src/main/scala added.
[INFO] 
[INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ adam-assembly-spark2_2.11 <<<
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ adam-assembly-spark2_2.11 ---
model contains 6 documentable templates
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-assembly/target/adam-assembly-spark2_2.11-0.27.0-SNAPSHOT-javadoc.jar
[INFO] 
[INFO] --- maven-shade-plugin:3.2.0:shade (default) @ adam-assembly-spark2_2.11 ---
[INFO] Including org.bdgenomics.adam:adam-cli-spark2_2.11:jar:0.27.0-SNAPSHOT in the shaded jar.
[INFO] Including org.bdgenomics.utils:utils-misc-spark2_2.11:jar:0.2.15 in the shaded jar.
[INFO] Including org.bdgenomics.utils:utils-io-spark2_2.11:jar:0.2.15 in the shaded jar.
[INFO] Including org.apache.httpcomponents:httpclient:jar:4.5.7 in the shaded jar.
[INFO] Including org.apache.httpcomponents:httpcore:jar:4.4.11 in the shaded jar.
[INFO] Including commons-logging:commons-logging:jar:1.2 in the shaded jar.
[INFO] Including commons-codec:commons-codec:jar:1.11 in the shaded jar.
[INFO] Including org.bdgenomics.utils:utils-cli-spark2_2.11:jar:0.2.15 in the shaded jar.
[INFO] Including org.clapper:grizzled-slf4j_2.11:jar:1.3.3 in the shaded jar.
[INFO] Including org.apache.parquet:parquet-avro:jar:1.10.1 in the shaded jar.
[INFO] Including org.apache.parquet:parquet-column:jar:1.10.1 in the shaded jar.
[INFO] Including org.apache.parquet:parquet-common:jar:1.10.1 in the shaded jar.
[INFO] Including org.apache.parquet:parquet-encoding:jar:1.10.1 in the shaded jar.
[INFO] Including org.apache.parquet:parquet-hadoop:jar:1.10.1 in the shaded jar.
[INFO] Including org.apache.parquet:parquet-jackson:jar:1.10.1 in the shaded jar.
[INFO] Including commons-pool:commons-pool:jar:1.6 in the shaded jar.
[INFO] Including org.apache.parquet:parquet-format:jar:2.4.0 in the shaded jar.
[INFO] Including org.bdgenomics.utils:utils-metrics-spark2_2.11:jar:0.2.15 in the shaded jar.
[INFO] Including com.netflix.servo:servo-core:jar:0.12.25 in the shaded jar.
[INFO] Including com.netflix.spectator:spectator-api:jar:0.67.0 in the shaded jar.
[INFO] Including org.slf4j:slf4j-api:jar:1.7.25 in the shaded jar.
[INFO] Including org.bdgenomics.bdg-formats:bdg-formats:jar:0.12.0 in the shaded jar.
[INFO] Including org.apache.avro:avro:jar:1.8.2 in the shaded jar.
[INFO] Including org.codehaus.jackson:jackson-core-asl:jar:1.9.13 in the shaded jar.
[INFO] Including org.codehaus.jackson:jackson-mapper-asl:jar:1.9.13 in the shaded jar.
[INFO] Including com.thoughtworks.paranamer:paranamer:jar:2.8 in the shaded jar.
[INFO] Including org.xerial.snappy:snappy-java:jar:1.1.1.3 in the shaded jar.
[INFO] Including org.apache.commons:commons-compress:jar:1.8.1 in the shaded jar.
[INFO] Including org.tukaani:xz:jar:1.5 in the shaded jar.
[INFO] Including org.bdgenomics.adam:adam-core-spark2_2.11:jar:0.27.0-SNAPSHOT in the shaded jar.
[INFO] Including org.bdgenomics.utils:utils-intervalrdd-spark2_2.11:jar:0.2.15 in the shaded jar.
[INFO] Including com.esotericsoftware.kryo:kryo:jar:2.24.0 in the shaded jar.
[INFO] Including com.esotericsoftware.minlog:minlog:jar:1.2 in the shaded jar.
[INFO] Including org.objenesis:objenesis:jar:2.1 in the shaded jar.
[INFO] Including commons-io:commons-io:jar:2.6 in the shaded jar.
[INFO] Including it.unimi.dsi:fastutil:jar:6.6.5 in the shaded jar.
[INFO] Including org.seqdoop:hadoop-bam:jar:7.9.2 in the shaded jar.
[INFO] Including com.github.jsr203hadoop:jsr203hadoop:jar:1.0.3 in the shaded jar.
[INFO] Including com.github.samtools:htsjdk:jar:2.18.2 in the shaded jar.
[INFO] Including org.apache.commons:commons-jexl:jar:2.1.1 in the shaded jar.
[INFO] Including gov.nih.nlm.ncbi:ngs-java:jar:2.9.0 in the shaded jar.
[INFO] Including com.google.guava:guava:jar:27.0-jre in the shaded jar.
[INFO] Including com.google.guava:failureaccess:jar:1.0 in the shaded jar.
[INFO] Including com.google.guava:listenablefuture:jar:9999.0-empty-to-avoid-conflict-with-guava in the shaded jar.
[INFO] Including org.checkerframework:checker-qual:jar:2.5.2 in the shaded jar.
[INFO] Including com.google.errorprone:error_prone_annotations:jar:2.2.0 in the shaded jar.
[INFO] Including com.google.j2objc:j2objc-annotations:jar:1.1 in the shaded jar.
[INFO] Including org.codehaus.mojo:animal-sniffer-annotations:jar:1.17 in the shaded jar.
[INFO] Including org.bdgenomics.adam:adam-codegen-spark2_2.11:jar:0.27.0-SNAPSHOT in the shaded jar.
[INFO] Including org.bdgenomics.adam:adam-apis-spark2_2.11:jar:0.27.0-SNAPSHOT in the shaded jar.
[INFO] Including args4j:args4j:jar:2.33 in the shaded jar.
[INFO] Including net.codingwell:scala-guice_2.11:jar:4.2.1 in the shaded jar.
[INFO] Including com.google.inject:guice:jar:4.2.0 in the shaded jar.
[INFO] Including javax.inject:javax.inject:jar:1 in the shaded jar.
[INFO] Including aopalliance:aopalliance:jar:1.0 in the shaded jar.
[INFO] Including org.scala-lang:scala-reflect:jar:2.11.12 in the shaded jar.
[INFO] Including com.google.code.findbugs:jsr305:jar:1.3.9 in the shaded jar.
[WARNING] WORKAROUND:  refusing to add class org/apache/parquet/avro/AvroSchemaConverter$2.class from jar /home/jenkins/.m2/repository/org/apache/parquet/parquet-avro/1.10.1/parquet-avro-1.10.1.jar
[WARNING] WORKAROUND:  refusing to add class org/apache/parquet/avro/AvroSchemaConverter.class from jar /home/jenkins/.m2/repository/org/apache/parquet/parquet-avro/1.10.1/parquet-avro-1.10.1.jar
[WARNING] WORKAROUND:  refusing to add class org/apache/parquet/avro/AvroSchemaConverter$1.class from jar /home/jenkins/.m2/repository/org/apache/parquet/parquet-avro/1.10.1/parquet-avro-1.10.1.jar
[WARNING] guava-27.0-jre.jar, failureaccess-1.0.jar define 2 overlapping classes: 
[WARNING]   - com.google.common.util.concurrent.internal.InternalFutureFailureAccess
[WARNING]   - com.google.common.util.concurrent.internal.InternalFutures
[WARNING] maven-shade-plugin has detected that some class files are
[WARNING] present in two or more JARs. When this happens, only one
[WARNING] single version of the class is copied to the uber jar.
[WARNING] Usually this is not harmful and you can skip these warnings,
[WARNING] otherwise try to manually exclude artifacts based on
[WARNING] mvn dependency:tree -Ddetail=true and the above output.
[WARNING] See http://maven.apache.org/plugins/maven-shade-plugin/
[INFO] Replacing original artifact with shaded artifact.
[INFO] Replacing /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-assembly/target/adam-assembly-spark2_2.11-0.27.0-SNAPSHOT.jar with /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-assembly/target/adam-assembly-spark2_2.11-0.27.0-SNAPSHOT-shaded.jar
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ADAM_2.11: Distribution 0.27.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-distribution-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-distribution-spark2_2.11 ---
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-distribution-spark2_2.11 ---
[INFO] Modified 0 of 0 .scala files
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-distribution-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-distribution-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-source-plugin:3.0.1:jar-no-fork (attach-sources) @ adam-distribution-spark2_2.11 ---
[INFO] 
[INFO] --- maven-javadoc-plugin:3.1.0:jar (attach-javadoc) @ adam-distribution-spark2_2.11 ---
[INFO] 
[INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ adam-distribution-spark2_2.11 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-distribution-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-distribution-spark2_2.11 ---
[INFO] 
[INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ adam-distribution-spark2_2.11 <<<
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ adam-distribution-spark2_2.11 ---
[INFO] No source files found
[INFO] 
[INFO] --- maven-assembly-plugin:3.1.0:single (default) @ adam-distribution-spark2_2.11 ---
[INFO] Reading assembly descriptor: src/main/assembly/assembly.xml
[INFO] Building tar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-distribution/target/adam-distribution-spark2_2.11-0.27.0-SNAPSHOT-bin.tar.gz
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/smithwaterman/ longer than 100 characters.
[WARNING] Resulting tar file can only be processed successfully by GNU compatible tar commands
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/VariantField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/Filter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/package.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/SampleField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/VariantAnnotationField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/ReferenceField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/ReadGroupField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/OntologyTermField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/AlignmentRecordField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/SequenceField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/TranscriptEffectField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FragmentField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/ReadField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/GenotypeField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FieldValue.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/NucleotideContigFragmentField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FeatureField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FieldEnumeration.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/SliceField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FieldEnumeration$SchemaVal.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/VariantCallingAnnotationsField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/DbxrefField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/Projection$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rich/RichAlignmentRecord.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rich/RichAlignmentRecord$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/InterleavedFASTQInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/ParquetUnboundFragmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/InterleavedFASTQInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/Tab5InFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/package.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/FragmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/DatasetBoundFragmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/Tab6InFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/RDDBoundFragmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/Tab6InFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/FragmentDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/Tab5InFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicBroadcast.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InFormatterCompanion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/InstrumentedADAMBAMOutputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AnySAMInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/RDDBoundAlignmentRecordDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/SAMInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AnySAMOutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMBAMOutputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMCRAMOutputFormatHeaderLess.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/InstrumentedADAMSAMOutputFormatHeaderLess.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/FASTQInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMSAMOutputFormatHeaderLess.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/BAMInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ReferencePositionPairSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/SingleReadBucketSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ParquetUnboundAlignmentRecordDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMCRAMOutputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/QualityScoreBin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/DatasetBoundAlignmentRecordDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/FASTQInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/IncorrectMDTagException.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AlignmentRecordDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/InstrumentedADAMBAMOutputFormatHeaderLess.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AnySAMInFormatterCompanion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/InstrumentedADAMCRAMOutputFormatHeaderLess.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/SAMInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AlignmentRecordDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/InstrumentedADAMCRAMOutputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMBAMOutputFormatHeaderLess.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/InstrumentedADAMSAMOutputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/QualityScoreBin$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/BAMInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMSAMOutputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/DatasetBoundGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/RightOuterShuffleRegionJoinAndGroupByLeft.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/VictimlessSortedIntervalPartitionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InnerTreeRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenericGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/AvroReadGroupGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenericConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/AvroGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/RightOuterTreeRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicDatasetWithLineage.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/FullOuterShuffleRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicPositionPartitioner.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/MultisampleAvroGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/LeftOuterShuffleRegionJoinAndGroupByLeft.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicRegionPartitioner$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/ADAMSaveAnyArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicRegionPartitioner.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/RightOuterTreeRegionJoinAndGroupByRight.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/SortedIntervalPartitionJoinWithVictims.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InnerTreeRegionJoinAndGroupByRight.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/ReferencePartitioner.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicPositionPartitioner$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VCFOutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/package.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VariantDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/ADAMVCFOutputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/GenotypeDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/DatasetBoundGenotypeDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/GenotypeDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/RDDBoundVariantDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/DatasetBoundVariantContextDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/RDDBoundGenotypeDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VCFInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/RDDBoundVariantContextDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/DatasetBoundVariantDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VariantContextDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VCFInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VariantContextDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VariantDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/ParquetUnboundVariantDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/ParquetUnboundGenotypeDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/MultisampleGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/RDDBoundGenericGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InnerShuffleRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/DatasetBoundGenericGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/NarrowPeakInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/NarrowPeakOutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/NarrowPeakInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/package.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/BEDOutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/DatasetBoundFeatureDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GFF3OutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/FeatureDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/CoverageDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GFF3InFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GTFOutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/BEDInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/DatasetBoundCoverageDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/RDDBoundCoverageDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GFF3InFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/ParquetUnboundCoverageDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/CoverageDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/BEDInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/ParquetUnboundFeatureDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GTFInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/RDDBoundFeatureDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GTFInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/FeatureDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InnerShuffleRegionJoinAndGroupByLeft.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/contig/DatasetBoundNucleotideContigFragmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/contig/RDDBoundNucleotideContigFragmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/contig/ParquetUnboundNucleotideContigFragmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/contig/NucleotideContigFragmentDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/contig/NucleotideContigFragmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/LeftOuterShuffleRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/ShuffleRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/consensus/package.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/consensus/ConsensusGenerator.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/consensus/ConsensusGenerator$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/smithwaterman/package.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/smithwaterman/SmithWaterman.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/smithwaterman/SmithWatermanConstantGapScoring.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/converters/AlignmentRecordConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/converters/VariantContextConverter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/converters/DefaultHeaderLines$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/converters/VariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/io/InterleavedFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/io/FastqRecordReader.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/io/FastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/io/SingleFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/instrumentation/package.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/instrumentation/Timers$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferenceRegion$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferenceRegionSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/SequenceRecord$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/TagType$$TypeVal.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/VariantContextSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/RegionOrdering$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReadGroupDictionary.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferencePosition$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferencePositionSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/SequenceDictionary$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/OptionalRegionOrdering$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/OptionalReferenceOrdering.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/SequenceRecord.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferenceOrdering.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferencePosition.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/VariantContext$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReadGroupDictionary$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/VariantContext.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferenceRegion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/SequenceDictionary.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/OptionalPositionOrdering$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/PositionOrdering$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/package.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/AvroSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/ADAMKryoRegistrator.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/WritableSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/InputStreamWithDecoder.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ReferenceContigMap.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ParquetFileTraversable.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/TextRddWriter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/FileExtensions$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/SequenceDictionaryReader$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ReferenceContigMapSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/TwoBitFileSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ReferenceContigMap$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/AttributeUtils$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/GenomeFileReader$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ParquetLogger$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/IndexedFastaFile.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantAnnotation.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/NucleotideContigFragment.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/TranscriptEffect$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantAnnotation$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/TranscriptEffect.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/ProcessingStep$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantCallingAnnotations$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantCallingAnnotations.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantContext$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/NucleotideContigFragment$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/AlignmentRecord.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/AlignmentRecord$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/apache/parquet/avro/AvroSchemaConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/InterleavedFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/FastqRecordReader.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/SingleFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/class-use/InterleavedFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/class-use/FastqRecordReader.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/class-use/FastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/class-use/SingleFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/javadocs/org/apache/parquet/avro/AvroSchemaConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/javadocs/org/apache/parquet/avro/class-use/AvroSchemaConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/python/DataFrameConversionWrapper.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToContigDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToAlignmentRecordsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToContigsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToAlignmentRecordsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToContigsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ContigsToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToContigsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ContigsToAlignmentRecordsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToVariantContextDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToAlignmentRecordsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToContigsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ContigsToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ContigsToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToAlignmentRecordsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToContigsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ContigsToContigsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToAlignmentRecordDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ContigsToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToFragmentDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ContigsToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToCoverageDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToAlignmentRecordsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/JavaADAMContext.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToAlignmentRecordsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToAlignmentRecordsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToAlignmentRecordsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToAlignmentRecordsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToContigsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToContigsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToAlignmentRecordsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToAlignmentRecordsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ContigsToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToAlignmentRecordsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToContigsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToFeatureDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToContigsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToContigsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ContigsToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToContigsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ContigsToVariantContextsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ContigsToAlignmentRecordsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToFeatureConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ContigsToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToContigsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToGenotypeDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/JavaADAMContext$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToVariantDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ContigsToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ContigsToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToContigsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFragmentsArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformVariants$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountContigKmers$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFragments$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformAlignmentsArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformGenotypesArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformVariants.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFeatures$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountReadKmersArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFragments.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/MergeShardsArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformVariantsArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/Reads2Coverage$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFeaturesArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFeatures.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountContigKmers.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountReadKmers$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformAlignments$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformAlignments.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountContigKmersArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformGenotypes$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformGenotypes.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/Reads2CoverageArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/repo/adam-assembly-spark2_2.11-0.27.0-SNAPSHOT-sources.jar longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/repo/adam-assembly-spark2_2.11-0.27.0-SNAPSHOT-javadoc.jar longer than 100 characters.
[INFO] Building tar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-distribution/target/adam-distribution-spark2_2.11-0.27.0-SNAPSHOT-bin.tar.bz2
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/smithwaterman/ longer than 100 characters.
[WARNING] Resulting tar file can only be processed successfully by GNU compatible tar commands
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/VariantField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/Filter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/package.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/SampleField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/VariantAnnotationField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/ReferenceField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/ReadGroupField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/OntologyTermField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/AlignmentRecordField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/SequenceField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/TranscriptEffectField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FragmentField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/ReadField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/GenotypeField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FieldValue.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/NucleotideContigFragmentField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FeatureField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FieldEnumeration.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/SliceField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FieldEnumeration$SchemaVal.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/VariantCallingAnnotationsField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/DbxrefField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/Projection$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rich/RichAlignmentRecord.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rich/RichAlignmentRecord$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/InterleavedFASTQInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/ParquetUnboundFragmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/InterleavedFASTQInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/Tab5InFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/package.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/FragmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/DatasetBoundFragmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/Tab6InFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/RDDBoundFragmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/Tab6InFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/FragmentDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/Tab5InFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicBroadcast.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InFormatterCompanion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/InstrumentedADAMBAMOutputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AnySAMInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/RDDBoundAlignmentRecordDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/SAMInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AnySAMOutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMBAMOutputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMCRAMOutputFormatHeaderLess.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/InstrumentedADAMSAMOutputFormatHeaderLess.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/FASTQInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMSAMOutputFormatHeaderLess.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/BAMInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ReferencePositionPairSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/SingleReadBucketSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ParquetUnboundAlignmentRecordDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMCRAMOutputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/QualityScoreBin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/DatasetBoundAlignmentRecordDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/FASTQInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/IncorrectMDTagException.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AlignmentRecordDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/InstrumentedADAMBAMOutputFormatHeaderLess.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AnySAMInFormatterCompanion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/InstrumentedADAMCRAMOutputFormatHeaderLess.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/SAMInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AlignmentRecordDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/InstrumentedADAMCRAMOutputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMBAMOutputFormatHeaderLess.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/InstrumentedADAMSAMOutputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/QualityScoreBin$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/BAMInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMSAMOutputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/DatasetBoundGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/RightOuterShuffleRegionJoinAndGroupByLeft.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/VictimlessSortedIntervalPartitionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InnerTreeRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenericGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/AvroReadGroupGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenericConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/AvroGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/RightOuterTreeRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicDatasetWithLineage.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/FullOuterShuffleRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicPositionPartitioner.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/MultisampleAvroGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/LeftOuterShuffleRegionJoinAndGroupByLeft.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicRegionPartitioner$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/ADAMSaveAnyArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicRegionPartitioner.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/RightOuterTreeRegionJoinAndGroupByRight.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/SortedIntervalPartitionJoinWithVictims.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InnerTreeRegionJoinAndGroupByRight.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/ReferencePartitioner.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicPositionPartitioner$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VCFOutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/package.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VariantDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/ADAMVCFOutputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/GenotypeDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/DatasetBoundGenotypeDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/GenotypeDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/RDDBoundVariantDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/DatasetBoundVariantContextDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/RDDBoundGenotypeDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VCFInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/RDDBoundVariantContextDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/DatasetBoundVariantDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VariantContextDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VCFInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VariantContextDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VariantDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/ParquetUnboundVariantDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/ParquetUnboundGenotypeDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/MultisampleGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/RDDBoundGenericGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InnerShuffleRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/DatasetBoundGenericGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/NarrowPeakInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/NarrowPeakOutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/NarrowPeakInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/package.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/BEDOutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/DatasetBoundFeatureDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GFF3OutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/FeatureDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/CoverageDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GFF3InFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GTFOutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/BEDInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/DatasetBoundCoverageDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/RDDBoundCoverageDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GFF3InFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/ParquetUnboundCoverageDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/CoverageDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/BEDInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/ParquetUnboundFeatureDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GTFInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/RDDBoundFeatureDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GTFInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/FeatureDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InnerShuffleRegionJoinAndGroupByLeft.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/contig/DatasetBoundNucleotideContigFragmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/contig/RDDBoundNucleotideContigFragmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/contig/ParquetUnboundNucleotideContigFragmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/contig/NucleotideContigFragmentDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/contig/NucleotideContigFragmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/LeftOuterShuffleRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/ShuffleRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/consensus/package.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/consensus/ConsensusGenerator.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/consensus/ConsensusGenerator$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/smithwaterman/package.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/smithwaterman/SmithWaterman.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/smithwaterman/SmithWatermanConstantGapScoring.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/converters/AlignmentRecordConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/converters/VariantContextConverter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/converters/DefaultHeaderLines$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/converters/VariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/io/InterleavedFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/io/FastqRecordReader.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/io/FastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/io/SingleFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/instrumentation/package.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/instrumentation/Timers$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferenceRegion$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferenceRegionSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/SequenceRecord$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/TagType$$TypeVal.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/VariantContextSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/RegionOrdering$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReadGroupDictionary.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferencePosition$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferencePositionSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/SequenceDictionary$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/OptionalRegionOrdering$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/OptionalReferenceOrdering.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/SequenceRecord.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferenceOrdering.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferencePosition.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/VariantContext$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReadGroupDictionary$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/VariantContext.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferenceRegion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/SequenceDictionary.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/OptionalPositionOrdering$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/PositionOrdering$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/package.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/AvroSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/ADAMKryoRegistrator.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/WritableSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/InputStreamWithDecoder.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ReferenceContigMap.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ParquetFileTraversable.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/TextRddWriter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/FileExtensions$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/SequenceDictionaryReader$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ReferenceContigMapSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/TwoBitFileSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ReferenceContigMap$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/AttributeUtils$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/GenomeFileReader$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ParquetLogger$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/IndexedFastaFile.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantAnnotation.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/NucleotideContigFragment.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/TranscriptEffect$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantAnnotation$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/TranscriptEffect.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/ProcessingStep$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantCallingAnnotations$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantCallingAnnotations.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantContext$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/NucleotideContigFragment$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/AlignmentRecord.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/AlignmentRecord$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/apache/parquet/avro/AvroSchemaConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/InterleavedFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/FastqRecordReader.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/SingleFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/class-use/InterleavedFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/class-use/FastqRecordReader.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/class-use/FastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/class-use/SingleFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/javadocs/org/apache/parquet/avro/AvroSchemaConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/javadocs/org/apache/parquet/avro/class-use/AvroSchemaConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/python/DataFrameConversionWrapper.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToContigDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToAlignmentRecordsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToContigsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToAlignmentRecordsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToContigsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ContigsToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToContigsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ContigsToAlignmentRecordsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToVariantContextDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToAlignmentRecordsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToContigsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ContigsToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ContigsToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToAlignmentRecordsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToContigsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ContigsToContigsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToAlignmentRecordDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ContigsToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToFragmentDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ContigsToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToCoverageDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToAlignmentRecordsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/JavaADAMContext.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToAlignmentRecordsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToAlignmentRecordsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToAlignmentRecordsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToAlignmentRecordsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToContigsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToContigsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToAlignmentRecordsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToAlignmentRecordsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ContigsToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToAlignmentRecordsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToContigsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToFeatureDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToContigsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToContigsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ContigsToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToContigsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ContigsToVariantContextsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ContigsToAlignmentRecordsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToFeatureConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ContigsToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToContigsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToGenotypeDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/JavaADAMContext$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToVariantDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ContigsToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ContigsToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToContigsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFragmentsArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformVariants$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountContigKmers$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFragments$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformAlignmentsArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformGenotypesArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformVariants.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFeatures$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountReadKmersArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFragments.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/MergeShardsArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformVariantsArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/Reads2Coverage$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFeaturesArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFeatures.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountContigKmers.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountReadKmers$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformAlignments$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformAlignments.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountContigKmersArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformGenotypes$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformGenotypes.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/Reads2CoverageArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/repo/adam-assembly-spark2_2.11-0.27.0-SNAPSHOT-sources.jar longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/repo/adam-assembly-spark2_2.11-0.27.0-SNAPSHOT-javadoc.jar longer than 100 characters.
[INFO] Building zip: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/adam-distribution/target/adam-distribution-spark2_2.11-0.27.0-SNAPSHOT-bin.zip
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO] 
[INFO] ADAM_2.11 .......................................... SUCCESS [  8.009 s]
[INFO] ADAM_2.11: Shader workaround ....................... SUCCESS [  3.908 s]
[INFO] ADAM_2.11: Avro-to-Dataset codegen utils ........... SUCCESS [  3.261 s]
[INFO] ADAM_2.11: Core .................................... SUCCESS [01:12 min]
[INFO] ADAM_2.11: APIs for Java, Python ................... SUCCESS [  6.394 s]
[INFO] ADAM_2.11: CLI ..................................... SUCCESS [ 16.110 s]
[INFO] ADAM_2.11: Assembly ................................ SUCCESS [ 11.934 s]
[INFO] ADAM_2.11: Distribution ............................ SUCCESS [ 23.270 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESS
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 02:25 min
[INFO] Finished at: 2019-05-15T15:01:50-07:00
[INFO] Final Memory: 63M/1480M
[INFO] ------------------------------------------------------------------------

# make sure that the distribution package contains an assembly jar
# if no assembly jar is found, this will exit with code 1 and fail the build
tar tzvf adam-distribution/target/adam-distribution*-bin.tar.gz | \
    grep adam-assembly | \
    grep jar | \
    grep -v -e sources -e javadoc 
+ grep adam-assembly
+ tar tzvf adam-distribution/target/adam-distribution-spark2_2.11-0.27.0-SNAPSHOT-bin.tar.gz
+ grep jar
+ grep -v -e sources -e javadoc
-rw-r--r-- jenkins/jenkins 44167714 2019-05-15 15:01 adam-distribution-spark2_2.11-0.27.0-SNAPSHOT/repo/adam-assembly-spark2_2.11-0.27.0-SNAPSHOT.jar

# we are done with maven, so clean up the maven temp dir
find ${ADAM_MVN_TMP_DIR}
+ find /tmp/adamTestMvnEoU0t8M
/tmp/adamTestMvnEoU0t8M
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite8043402638187892739
/tmp/adamTestMvnEoU0t8M/6381783923094224936
/tmp/adamTestMvnEoU0t8M/6381783923094224936/unordered.adam
/tmp/adamTestMvnEoU0t8M/6381783923094224936/unordered.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/6381783923094224936/unordered.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/6381783923094224936/unordered.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/6381783923094224936/unordered.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/6381783923094224936/unordered.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/6381783923094224936/unordered.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/6381783923094224936/unordered.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/6381783923094224936/unordered.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/6381783923094224936/unordered.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/6381783923094224936/unordered.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/6381783923094224936/unordered.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/6381783923094224936/unordered.adam/_metadata
/tmp/adamTestMvnEoU0t8M/6381783923094224936/unordered.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/6381783923094224936/unordered.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite6928511340018709177
/tmp/adamTestMvnEoU0t8M/1557956850188-0
/tmp/adamTestMvnEoU0t8M/1557956850188-0/test.fa
/tmp/adamTestMvnEoU0t8M/1557956850188-0/test.fa/part-00000
/tmp/adamTestMvnEoU0t8M/1557956850188-0/test.fa/_SUCCESS
/tmp/adamTestMvnEoU0t8M/1557956850188-0/test.fa/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/1557956850188-0/test.fa/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4866811095383964518
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite945508914842490125
/tmp/adamTestMvnEoU0t8M/7509162933256074331
/tmp/adamTestMvnEoU0t8M/7509162933256074331/.out.cram_head.crc
/tmp/adamTestMvnEoU0t8M/7509162933256074331/out.cram
/tmp/adamTestMvnEoU0t8M/7509162933256074331/out.cram_tail
/tmp/adamTestMvnEoU0t8M/7509162933256074331/out.cram_tail/.part-r-00002.cram.crc
/tmp/adamTestMvnEoU0t8M/7509162933256074331/out.cram_tail/.part-r-00001.cram.crc
/tmp/adamTestMvnEoU0t8M/7509162933256074331/out.cram_tail/.part-r-00000.cram.crc
/tmp/adamTestMvnEoU0t8M/7509162933256074331/out.cram_tail/part-r-00003.cram
/tmp/adamTestMvnEoU0t8M/7509162933256074331/out.cram_tail/_SUCCESS
/tmp/adamTestMvnEoU0t8M/7509162933256074331/out.cram_tail/part-r-00001.cram
/tmp/adamTestMvnEoU0t8M/7509162933256074331/out.cram_tail/part-r-00000.cram
/tmp/adamTestMvnEoU0t8M/7509162933256074331/out.cram_tail/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/7509162933256074331/out.cram_tail/.part-r-00003.cram.crc
/tmp/adamTestMvnEoU0t8M/7509162933256074331/out.cram_tail/part-r-00002.cram
/tmp/adamTestMvnEoU0t8M/7509162933256074331/out.cram_head
/tmp/adamTestMvnEoU0t8M/7509162933256074331/.out.cram.crc
/tmp/adamTestMvnEoU0t8M/javaAC7357356096051117142
/tmp/adamTestMvnEoU0t8M/javaAC7357356096051117142/testRdd.feature.adam
/tmp/adamTestMvnEoU0t8M/javaAC7357356096051117142/testRdd.feature.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/javaAC7357356096051117142/testRdd.feature.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/javaAC7357356096051117142/testRdd.feature.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnEoU0t8M/javaAC7357356096051117142/testRdd.feature.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/javaAC7357356096051117142/testRdd.feature.adam/._samples.avro.crc
/tmp/adamTestMvnEoU0t8M/javaAC7357356096051117142/testRdd.feature.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/javaAC7357356096051117142/testRdd.feature.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/javaAC7357356096051117142/testRdd.feature.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/javaAC7357356096051117142/testRdd.feature.adam/_samples.avro
/tmp/adamTestMvnEoU0t8M/javaAC7357356096051117142/testRdd.feature.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/javaAC7357356096051117142/testRdd.feature.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/javaAC7357356096051117142/testRdd.feature.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnEoU0t8M/javaAC7357356096051117142/testRdd.feature.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnEoU0t8M/javaAC7357356096051117142/testRdd.feature.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/javaAC7357356096051117142/testRdd.feature.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/javaAC7357356096051117142/testRdd.feature.adam/_metadata
/tmp/adamTestMvnEoU0t8M/javaAC7357356096051117142/testRdd.feature.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/javaAC7357356096051117142/testRdd.feature.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite5410123204620799163
/tmp/adamTestMvnEoU0t8M/TempSuite4632968793565495884.bam
/tmp/adamTestMvnEoU0t8M/unordered.sam8182736278887765532.sam
/tmp/adamTestMvnEoU0t8M/TempSuite668773675793478516.adam
/tmp/adamTestMvnEoU0t8M/TempSuite668773675793478516.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite668773675793478516.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/TempSuite668773675793478516.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite668773675793478516.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite668773675793478516.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite668773675793478516.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite668773675793478516.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite668773675793478516.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite668773675793478516.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/TempSuite668773675793478516.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite668773675793478516.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite668773675793478516.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite668773675793478516.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite668773675793478516.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite668773675793478516.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite668773675793478516.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite668773675793478516.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite668773675793478516.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite668773675793478516.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite668773675793478516.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite1792177785016642931.adam
/tmp/adamTestMvnEoU0t8M/TempSuite1792177785016642931.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1792177785016642931.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/TempSuite1792177785016642931.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite1792177785016642931.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1792177785016642931.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite1792177785016642931.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/TempSuite1792177785016642931.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1792177785016642931.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite1792177785016642931.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1792177785016642931.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1792177785016642931.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1792177785016642931.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite1792177785016642931.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1792177785016642931.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite3868085012153326322.bed
/tmp/adamTestMvnEoU0t8M/TempSuite3868085012153326322.bed/part-00000
/tmp/adamTestMvnEoU0t8M/TempSuite3868085012153326322.bed/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite3868085012153326322.bed/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3868085012153326322.bed/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/145679644555019088
/tmp/adamTestMvnEoU0t8M/145679644555019088/.sorted.sam.crc
/tmp/adamTestMvnEoU0t8M/145679644555019088/sorted.sam
/tmp/adamTestMvnEoU0t8M/TempSuite3918009048644189143.bed
/tmp/adamTestMvnEoU0t8M/TempSuite3918009048644189143.bed/part-00000
/tmp/adamTestMvnEoU0t8M/TempSuite3918009048644189143.bed/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite3918009048644189143.bed/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3918009048644189143.bed/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5691251268856841169
/tmp/adamTestMvnEoU0t8M/1557957512406-0
/tmp/adamTestMvnEoU0t8M/1557957512406-0/bqsr1-r1.fq
/tmp/adamTestMvnEoU0t8M/1557957512406-0/bqsr1-r1.fq/part-00000
/tmp/adamTestMvnEoU0t8M/1557957512406-0/bqsr1-r1.fq/_SUCCESS
/tmp/adamTestMvnEoU0t8M/1557957512406-0/bqsr1-r1.fq/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/1557957512406-0/bqsr1-r1.fq/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/1557957512406-0/bqsr1-r2.fq
/tmp/adamTestMvnEoU0t8M/1557957512406-0/bqsr1-r2.fq/part-00000
/tmp/adamTestMvnEoU0t8M/1557957512406-0/bqsr1-r2.fq/_SUCCESS
/tmp/adamTestMvnEoU0t8M/1557957512406-0/bqsr1-r2.fq/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/1557957512406-0/bqsr1-r2.fq/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/unordered.sam5319923586238480043.sam
/tmp/adamTestMvnEoU0t8M/TempSuite1649424704772709990
/tmp/adamTestMvnEoU0t8M/TempSuite2711212292622014368
/tmp/adamTestMvnEoU0t8M/TempSuite7634304226183097405.adam
/tmp/adamTestMvnEoU0t8M/TempSuite7634304226183097405.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7634304226183097405.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite7634304226183097405.adam/._samples.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7634304226183097405.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7634304226183097405.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7634304226183097405.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite7634304226183097405.adam/_samples.avro
/tmp/adamTestMvnEoU0t8M/TempSuite7634304226183097405.adam/_header
/tmp/adamTestMvnEoU0t8M/TempSuite7634304226183097405.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite7634304226183097405.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7634304226183097405.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7634304226183097405.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite7634304226183097405.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7634304226183097405.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/1150506543750402046
/tmp/adamTestMvnEoU0t8M/1150506543750402046/genotypes.adam
/tmp/adamTestMvnEoU0t8M/1150506543750402046/genotypes.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/1150506543750402046/genotypes.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/1150506543750402046/genotypes.adam/._samples.avro.crc
/tmp/adamTestMvnEoU0t8M/1150506543750402046/genotypes.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/1150506543750402046/genotypes.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/1150506543750402046/genotypes.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/1150506543750402046/genotypes.adam/_samples.avro
/tmp/adamTestMvnEoU0t8M/1150506543750402046/genotypes.adam/_header
/tmp/adamTestMvnEoU0t8M/1150506543750402046/genotypes.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/1150506543750402046/genotypes.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/1150506543750402046/genotypes.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/1150506543750402046/genotypes.adam/_metadata
/tmp/adamTestMvnEoU0t8M/1150506543750402046/genotypes.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/1150506543750402046/genotypes.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite702706028125262225.bed
/tmp/adamTestMvnEoU0t8M/TempSuite702706028125262225.bed/part-00000
/tmp/adamTestMvnEoU0t8M/TempSuite702706028125262225.bed/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite702706028125262225.bed/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/TempSuite702706028125262225.bed/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/.TempSuite7382473901725847072.sam.crc
/tmp/adamTestMvnEoU0t8M/4222492936892032740
/tmp/adamTestMvnEoU0t8M/4222492936892032740/.unordered.sam.crc
/tmp/adamTestMvnEoU0t8M/4222492936892032740/unordered.sam
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite7987235682986401229
/tmp/adamTestMvnEoU0t8M/TempSuite2216274508680158113
/tmp/adamTestMvnEoU0t8M/TempSuite8422383581960980573
/tmp/adamTestMvnEoU0t8M/TempSuite8603484717416214367
/tmp/adamTestMvnEoU0t8M/TempSuite158682763552952911.bed
/tmp/adamTestMvnEoU0t8M/TempSuite158682763552952911.bed/part-00002
/tmp/adamTestMvnEoU0t8M/TempSuite158682763552952911.bed/.part-00003.crc
/tmp/adamTestMvnEoU0t8M/TempSuite158682763552952911.bed/part-00000
/tmp/adamTestMvnEoU0t8M/TempSuite158682763552952911.bed/part-00003
/tmp/adamTestMvnEoU0t8M/TempSuite158682763552952911.bed/.part-00002.crc
/tmp/adamTestMvnEoU0t8M/TempSuite158682763552952911.bed/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite158682763552952911.bed/part-00001
/tmp/adamTestMvnEoU0t8M/TempSuite158682763552952911.bed/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/TempSuite158682763552952911.bed/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite158682763552952911.bed/.part-00001.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2173671205212564154.adam
/tmp/adamTestMvnEoU0t8M/TempSuite2173671205212564154.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2173671205212564154.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite2173671205212564154.adam/._samples.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2173671205212564154.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2173671205212564154.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite2173671205212564154.adam/_samples.avro
/tmp/adamTestMvnEoU0t8M/TempSuite2173671205212564154.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite2173671205212564154.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2173671205212564154.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2173671205212564154.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite2173671205212564154.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2173671205212564154.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite2895106857166908267
/tmp/adamTestMvnEoU0t8M/TempSuite5401957398013403406
/tmp/adamTestMvnEoU0t8M/.FeatureDatasetFunctionsSuite5830737303149894811.gtf.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6442097469203618543
/tmp/adamTestMvnEoU0t8M/6520353226189543394
/tmp/adamTestMvnEoU0t8M/6520353226189543394/.unordered.sam.crc
/tmp/adamTestMvnEoU0t8M/6520353226189543394/unordered.sam
/tmp/adamTestMvnEoU0t8M/TempSuite122912595461190228
/tmp/adamTestMvnEoU0t8M/TempSuite5464250952261223025
/tmp/adamTestMvnEoU0t8M/TempSuite6723790623064849642.adam
/tmp/adamTestMvnEoU0t8M/TempSuite6723790623064849642.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6723790623064849642.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/TempSuite6723790623064849642.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite6723790623064849642.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6723790623064849642.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite6723790623064849642.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/TempSuite6723790623064849642.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6723790623064849642.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite6723790623064849642.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6723790623064849642.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6723790623064849642.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6723790623064849642.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite6723790623064849642.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6723790623064849642.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite2950829516276568852
/tmp/adamTestMvnEoU0t8M/TempSuite6812686492287890595
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3092290535575249806.narrowPeak
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3092290535575249806.narrowPeak/part-00002
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3092290535575249806.narrowPeak/.part-00003.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3092290535575249806.narrowPeak/part-00000
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3092290535575249806.narrowPeak/part-00003
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3092290535575249806.narrowPeak/.part-00002.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3092290535575249806.narrowPeak/_SUCCESS
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3092290535575249806.narrowPeak/part-00001
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3092290535575249806.narrowPeak/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3092290535575249806.narrowPeak/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3092290535575249806.narrowPeak/.part-00001.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6505567299914607958
/tmp/adamTestMvnEoU0t8M/TempSuite7819026702478588955
/tmp/adamTestMvnEoU0t8M/.FeatureDatasetFunctionsSuite3679525687411650867.interval_list.crc
/tmp/adamTestMvnEoU0t8M/7502926004069440967
/tmp/adamTestMvnEoU0t8M/7502926004069440967/.out.sam_head.crc
/tmp/adamTestMvnEoU0t8M/7502926004069440967/out.sam_tail
/tmp/adamTestMvnEoU0t8M/7502926004069440967/out.sam_tail/part-r-00002.sam
/tmp/adamTestMvnEoU0t8M/7502926004069440967/out.sam_tail/.part-r-00003.sam.crc
/tmp/adamTestMvnEoU0t8M/7502926004069440967/out.sam_tail/part-r-00000.sam
/tmp/adamTestMvnEoU0t8M/7502926004069440967/out.sam_tail/part-r-00003.sam
/tmp/adamTestMvnEoU0t8M/7502926004069440967/out.sam_tail/.part-r-00001.sam.crc
/tmp/adamTestMvnEoU0t8M/7502926004069440967/out.sam_tail/.part-r-00002.sam.crc
/tmp/adamTestMvnEoU0t8M/7502926004069440967/out.sam_tail/_SUCCESS
/tmp/adamTestMvnEoU0t8M/7502926004069440967/out.sam_tail/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/7502926004069440967/out.sam_tail/part-r-00001.sam
/tmp/adamTestMvnEoU0t8M/7502926004069440967/out.sam_tail/.part-r-00000.sam.crc
/tmp/adamTestMvnEoU0t8M/7502926004069440967/out.sam_head
/tmp/adamTestMvnEoU0t8M/7502926004069440967/.out.sam.crc
/tmp/adamTestMvnEoU0t8M/7502926004069440967/out.sam
/tmp/adamTestMvnEoU0t8M/TempSuite6786657876849724437.adam
/tmp/adamTestMvnEoU0t8M/TempSuite6786657876849724437.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6786657876849724437.adam/_header
/tmp/adamTestMvnEoU0t8M/TempSuite6786657876849724437.adam/part-00000-a6fa8777-5063-411b-bbc1-dc8cfec9eec6-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite6786657876849724437.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite6786657876849724437.adam/.part-00000-a6fa8777-5063-411b-bbc1-dc8cfec9eec6-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6786657876849724437.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6786657876849724437.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6786657876849724437.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite7547240860935160035.bed
/tmp/adamTestMvnEoU0t8M/TempSuite7547240860935160035.bed/part-00000
/tmp/adamTestMvnEoU0t8M/TempSuite7547240860935160035.bed/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite7547240860935160035.bed/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7547240860935160035.bed/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/javaAC5508374564236362648
/tmp/adamTestMvnEoU0t8M/javaAC5508374564236362648/testRdd.genotype.adam
/tmp/adamTestMvnEoU0t8M/javaAC5508374564236362648/testRdd.genotype.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/javaAC5508374564236362648/testRdd.genotype.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/javaAC5508374564236362648/testRdd.genotype.adam/._samples.avro.crc
/tmp/adamTestMvnEoU0t8M/javaAC5508374564236362648/testRdd.genotype.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/javaAC5508374564236362648/testRdd.genotype.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/javaAC5508374564236362648/testRdd.genotype.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/javaAC5508374564236362648/testRdd.genotype.adam/_samples.avro
/tmp/adamTestMvnEoU0t8M/javaAC5508374564236362648/testRdd.genotype.adam/_header
/tmp/adamTestMvnEoU0t8M/javaAC5508374564236362648/testRdd.genotype.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/javaAC5508374564236362648/testRdd.genotype.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/javaAC5508374564236362648/testRdd.genotype.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/javaAC5508374564236362648/testRdd.genotype.adam/_metadata
/tmp/adamTestMvnEoU0t8M/javaAC5508374564236362648/testRdd.genotype.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/javaAC5508374564236362648/testRdd.genotype.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite5260989173652776627
/tmp/adamTestMvnEoU0t8M/TempSuite2961033051713715829
/tmp/adamTestMvnEoU0t8M/TempSuite2457424164691733004
/tmp/adamTestMvnEoU0t8M/TempSuite2045330511677925354
/tmp/adamTestMvnEoU0t8M/TempSuite7525400850549284944.bed
/tmp/adamTestMvnEoU0t8M/TempSuite7525400850549284944.bed/part-00000
/tmp/adamTestMvnEoU0t8M/TempSuite7525400850549284944.bed/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite7525400850549284944.bed/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7525400850549284944.bed/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite9111895789077226268
/tmp/adamTestMvnEoU0t8M/TempSuite1308563358413172557.adam
/tmp/adamTestMvnEoU0t8M/TempSuite1308563358413172557.adam/.part-00000-06a10d52-e749-4436-9c24-b48258b42d41-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1308563358413172557.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1308563358413172557.adam/_header
/tmp/adamTestMvnEoU0t8M/TempSuite1308563358413172557.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite1308563358413172557.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1308563358413172557.adam/part-00000-06a10d52-e749-4436-9c24-b48258b42d41-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite1308563358413172557.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1308563358413172557.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite1884333577927104533.adam
/tmp/adamTestMvnEoU0t8M/TempSuite1884333577927104533.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1884333577927104533.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/TempSuite1884333577927104533.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite1884333577927104533.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1884333577927104533.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite1884333577927104533.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/TempSuite1884333577927104533.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1884333577927104533.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite1884333577927104533.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1884333577927104533.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1884333577927104533.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1884333577927104533.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite1884333577927104533.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1884333577927104533.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite1829719247992619316.adam
/tmp/adamTestMvnEoU0t8M/TempSuite1829719247992619316.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1829719247992619316.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite1829719247992619316.adam/._samples.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1829719247992619316.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1829719247992619316.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1829719247992619316.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite1829719247992619316.adam/_samples.avro
/tmp/adamTestMvnEoU0t8M/TempSuite1829719247992619316.adam/_header
/tmp/adamTestMvnEoU0t8M/TempSuite1829719247992619316.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite1829719247992619316.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1829719247992619316.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1829719247992619316.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite1829719247992619316.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1829719247992619316.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite9043334763650099102
/tmp/adamTestMvnEoU0t8M/TempSuite7980798615728984614
/tmp/adamTestMvnEoU0t8M/TempSuite3026437660390377041
/tmp/adamTestMvnEoU0t8M/TempSuite4265705078652514770.bed
/tmp/adamTestMvnEoU0t8M/TempSuite4265705078652514770.bed/part-00000
/tmp/adamTestMvnEoU0t8M/TempSuite4265705078652514770.bed/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite4265705078652514770.bed/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4265705078652514770.bed/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3231233770752078762
/tmp/adamTestMvnEoU0t8M/TempSuite502335560193261156
/tmp/adamTestMvnEoU0t8M/TempSuite7284285160775385765
/tmp/adamTestMvnEoU0t8M/TempSuite3041039100394882305
/tmp/adamTestMvnEoU0t8M/TempSuite2882552057885778457
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3594041791745496765
/tmp/adamTestMvnEoU0t8M/TempSuite7185099737704622476.adam
/tmp/adamTestMvnEoU0t8M/TempSuite7185099737704622476.adam/.part-00000-a5d68bab-b8d9-4446-88ab-f5df9b73416a-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7185099737704622476.adam/._samples.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7185099737704622476.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7185099737704622476.adam/_samples.avro
/tmp/adamTestMvnEoU0t8M/TempSuite7185099737704622476.adam/_header
/tmp/adamTestMvnEoU0t8M/TempSuite7185099737704622476.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite7185099737704622476.adam/part-00000-a5d68bab-b8d9-4446-88ab-f5df9b73416a-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite7185099737704622476.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7185099737704622476.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7185099737704622476.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite2330606400490698547
/tmp/adamTestMvnEoU0t8M/1557957270098-0
/tmp/adamTestMvnEoU0t8M/1557957270098-0/test.fa
/tmp/adamTestMvnEoU0t8M/1557957270098-0/test.fa/part-00000
/tmp/adamTestMvnEoU0t8M/1557957270098-0/test.fa/_SUCCESS
/tmp/adamTestMvnEoU0t8M/1557957270098-0/test.fa/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/1557957270098-0/test.fa/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2494629951774910197.adam
/tmp/adamTestMvnEoU0t8M/TempSuite2494629951774910197.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/TempSuite2494629951774910197.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/TempSuite2494629951774910197.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2494629951774910197.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite2494629951774910197.adam/part-00000-f199c2a4-1810-44b3-907c-7f5868a224a9-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite2494629951774910197.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2494629951774910197.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2494629951774910197.adam/.part-00000-f199c2a4-1810-44b3-907c-7f5868a224a9-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2494629951774910197.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2494629951774910197.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/5500742106692493586
/tmp/adamTestMvnEoU0t8M/5500742106692493586/.unordered.sam.crc
/tmp/adamTestMvnEoU0t8M/5500742106692493586/unordered.sam
/tmp/adamTestMvnEoU0t8M/TempSuite8760585720463252411.adam
/tmp/adamTestMvnEoU0t8M/TempSuite8760585720463252411.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8760585720463252411.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite8760585720463252411.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite8760585720463252411.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8760585720463252411.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8760585720463252411.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8760585720463252411.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite8760585720463252411.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8760585720463252411.adam/_header
/tmp/adamTestMvnEoU0t8M/TempSuite8760585720463252411.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite8760585720463252411.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8760585720463252411.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite8760585720463252411.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite8760585720463252411.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8760585720463252411.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8760585720463252411.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite8760585720463252411.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8760585720463252411.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite188571292639663770.bed
/tmp/adamTestMvnEoU0t8M/TempSuite188571292639663770.bed/part-00002
/tmp/adamTestMvnEoU0t8M/TempSuite188571292639663770.bed/.part-00003.crc
/tmp/adamTestMvnEoU0t8M/TempSuite188571292639663770.bed/part-00000
/tmp/adamTestMvnEoU0t8M/TempSuite188571292639663770.bed/part-00003
/tmp/adamTestMvnEoU0t8M/TempSuite188571292639663770.bed/.part-00002.crc
/tmp/adamTestMvnEoU0t8M/TempSuite188571292639663770.bed/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite188571292639663770.bed/part-00001
/tmp/adamTestMvnEoU0t8M/TempSuite188571292639663770.bed/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/TempSuite188571292639663770.bed/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite188571292639663770.bed/.part-00001.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6563083365729064506
/tmp/adamTestMvnEoU0t8M/6351040265827330726
/tmp/adamTestMvnEoU0t8M/6351040265827330726/chr20.contig.adam
/tmp/adamTestMvnEoU0t8M/6351040265827330726/chr20.contig.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/6351040265827330726/chr20.contig.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/6351040265827330726/chr20.contig.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/6351040265827330726/chr20.contig.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/6351040265827330726/chr20.contig.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/6351040265827330726/chr20.contig.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/6351040265827330726/chr20.contig.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/6351040265827330726/chr20.contig.adam/_metadata
/tmp/adamTestMvnEoU0t8M/6351040265827330726/chr20.contig.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/6351040265827330726/chr20.contig.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite4586639321366024300.adam
/tmp/adamTestMvnEoU0t8M/TempSuite4586639321366024300.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4586639321366024300.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/TempSuite4586639321366024300.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite4586639321366024300.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite4586639321366024300.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4586639321366024300.adam/._partitionMap.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4586639321366024300.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4586639321366024300.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite4586639321366024300.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4586639321366024300.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/TempSuite4586639321366024300.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4586639321366024300.adam/_partitionMap.avro
/tmp/adamTestMvnEoU0t8M/TempSuite4586639321366024300.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite4586639321366024300.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4586639321366024300.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite4586639321366024300.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite4586639321366024300.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4586639321366024300.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4586639321366024300.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4586639321366024300.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite4586639321366024300.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4586639321366024300.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite8884348626472027979
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite972963908101288164.interval_list
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite972963908101288164
/tmp/adamTestMvnEoU0t8M/1009381964295994050
/tmp/adamTestMvnEoU0t8M/1009381964295994050/.ordered.sam.crc
/tmp/adamTestMvnEoU0t8M/1009381964295994050/ordered.sam
/tmp/adamTestMvnEoU0t8M/TempSuite6988963457805904510.adam
/tmp/adamTestMvnEoU0t8M/TempSuite6988963457805904510.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6988963457805904510.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/TempSuite6988963457805904510.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite6988963457805904510.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6988963457805904510.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite6988963457805904510.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/TempSuite6988963457805904510.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6988963457805904510.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite6988963457805904510.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6988963457805904510.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6988963457805904510.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6988963457805904510.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite6988963457805904510.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6988963457805904510.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite4222835361581997133.adam
/tmp/adamTestMvnEoU0t8M/TempSuite4222835361581997133.adam/._partitionedByStartPos.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4222835361581997133.adam/._samples.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4222835361581997133.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4222835361581997133.adam/_samples.avro
/tmp/adamTestMvnEoU0t8M/TempSuite4222835361581997133.adam/_header
/tmp/adamTestMvnEoU0t8M/TempSuite4222835361581997133.adam/_partitionedByStartPos
/tmp/adamTestMvnEoU0t8M/TempSuite4222835361581997133.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite4222835361581997133.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4222835361581997133.adam/referenceName=1
/tmp/adamTestMvnEoU0t8M/TempSuite4222835361581997133.adam/referenceName=1/positionBin=0
/tmp/adamTestMvnEoU0t8M/TempSuite4222835361581997133.adam/referenceName=1/positionBin=0/part-00000-deb9e30a-7d28-439d-a831-1d1ac0f53848.c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite4222835361581997133.adam/referenceName=1/positionBin=0/.part-00000-deb9e30a-7d28-439d-a831-1d1ac0f53848.c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4222835361581997133.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4222835361581997133.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite1229654300177179960
/tmp/adamTestMvnEoU0t8M/TempSuite6175396954171688975.adam
/tmp/adamTestMvnEoU0t8M/TempSuite6175396954171688975.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6175396954171688975.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite6175396954171688975.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6175396954171688975.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6175396954171688975.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite6175396954171688975.adam/_header
/tmp/adamTestMvnEoU0t8M/TempSuite6175396954171688975.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite6175396954171688975.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6175396954171688975.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6175396954171688975.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite6175396954171688975.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6175396954171688975.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/sorted-variants.vcf9141889784091499553.vcf
/tmp/adamTestMvnEoU0t8M/TempSuite3142527425785939104.adam
/tmp/adamTestMvnEoU0t8M/TempSuite3142527425785939104.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3142527425785939104.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/TempSuite3142527425785939104.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite3142527425785939104.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3142527425785939104.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite3142527425785939104.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/TempSuite3142527425785939104.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3142527425785939104.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite3142527425785939104.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3142527425785939104.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3142527425785939104.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3142527425785939104.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite3142527425785939104.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3142527425785939104.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite8772945878744686486.adam
/tmp/adamTestMvnEoU0t8M/TempSuite8772945878744686486.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8772945878744686486.adam/_header
/tmp/adamTestMvnEoU0t8M/TempSuite8772945878744686486.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite8772945878744686486.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8772945878744686486.adam/.part-00000-ede007b9-835c-4d9c-9add-a897c29ef4a5-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8772945878744686486.adam/part-00000-ede007b9-835c-4d9c-9add-a897c29ef4a5-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite8772945878744686486.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8772945878744686486.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite2541799031308679429
/tmp/adamTestMvnEoU0t8M/reads12593762072248812302
/tmp/adamTestMvnEoU0t8M/reads12593762072248812302/reads12.fq
/tmp/adamTestMvnEoU0t8M/reads12593762072248812302/reads12.fq/part-00000
/tmp/adamTestMvnEoU0t8M/reads12593762072248812302/reads12.fq/_SUCCESS
/tmp/adamTestMvnEoU0t8M/reads12593762072248812302/reads12.fq/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/reads12593762072248812302/reads12.fq/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/random.vcf4899335154752114705.vcf
/tmp/adamTestMvnEoU0t8M/TempSuite8487827448126437580
/tmp/adamTestMvnEoU0t8M/unordered.sam6367023024630630089.sam
/tmp/adamTestMvnEoU0t8M/small.sam8058200643314465517.sam
/tmp/adamTestMvnEoU0t8M/TempSuite7250404884843167483.adam
/tmp/adamTestMvnEoU0t8M/TempSuite7250404884843167483.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7250404884843167483.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite7250404884843167483.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7250404884843167483.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite7250404884843167483.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite7250404884843167483.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7250404884843167483.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7250404884843167483.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite7250404884843167483.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7250404884843167483.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/8880162736229917014
/tmp/adamTestMvnEoU0t8M/8880162736229917014/unordered.adam
/tmp/adamTestMvnEoU0t8M/8880162736229917014/unordered.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/8880162736229917014/unordered.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/8880162736229917014/unordered.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/8880162736229917014/unordered.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/8880162736229917014/unordered.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/8880162736229917014/unordered.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/8880162736229917014/unordered.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/8880162736229917014/unordered.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/8880162736229917014/unordered.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/8880162736229917014/unordered.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/8880162736229917014/unordered.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/8880162736229917014/unordered.adam/_metadata
/tmp/adamTestMvnEoU0t8M/8880162736229917014/unordered.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/8880162736229917014/unordered.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite8318087704233739757
/tmp/adamTestMvnEoU0t8M/754426881876309164
/tmp/adamTestMvnEoU0t8M/754426881876309164/sorted.vcf
/tmp/adamTestMvnEoU0t8M/754426881876309164/.sorted.vcf.crc
/tmp/adamTestMvnEoU0t8M/5134757304383034122
/tmp/adamTestMvnEoU0t8M/5134757304383034122/artificial.cram
/tmp/adamTestMvnEoU0t8M/5134757304383034122/artificial.cram/.part-r-00000.cram.crc
/tmp/adamTestMvnEoU0t8M/5134757304383034122/artificial.cram/_SUCCESS
/tmp/adamTestMvnEoU0t8M/5134757304383034122/artificial.cram/part-r-00000.cram
/tmp/adamTestMvnEoU0t8M/5134757304383034122/artificial.cram/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite9088731903792791788.adam
/tmp/adamTestMvnEoU0t8M/TempSuite9088731903792791788.adam/._samples.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite9088731903792791788.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/TempSuite9088731903792791788.adam/_samples.avro
/tmp/adamTestMvnEoU0t8M/TempSuite9088731903792791788.adam/_header
/tmp/adamTestMvnEoU0t8M/TempSuite9088731903792791788.adam/part-00000-997496d7-5c7f-4bd8-b529-981e56950616-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite9088731903792791788.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite9088731903792791788.adam/.part-00000-997496d7-5c7f-4bd8-b529-981e56950616-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite9088731903792791788.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite9088731903792791788.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite9088731903792791788.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite1031473382183728571.adam
/tmp/adamTestMvnEoU0t8M/TempSuite1031473382183728571.adam/.part-00001-4f5ae099-1fba-4a27-89c0-4fd180c4c922-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1031473382183728571.adam/.part-00002-4f5ae099-1fba-4a27-89c0-4fd180c4c922-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1031473382183728571.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/TempSuite1031473382183728571.adam/part-00002-4f5ae099-1fba-4a27-89c0-4fd180c4c922-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite1031473382183728571.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/TempSuite1031473382183728571.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1031473382183728571.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite1031473382183728571.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1031473382183728571.adam/.part-00000-4f5ae099-1fba-4a27-89c0-4fd180c4c922-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1031473382183728571.adam/part-00001-4f5ae099-1fba-4a27-89c0-4fd180c4c922-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite1031473382183728571.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1031473382183728571.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1031473382183728571.adam/part-00000-4f5ae099-1fba-4a27-89c0-4fd180c4c922-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite1031473382183728571.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite7012867335764901822
/tmp/adamTestMvnEoU0t8M/TempSuite3872231978081642071.sam
/tmp/adamTestMvnEoU0t8M/TempSuite5168480406662991037
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite8002895390276983789
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite4481801702312371247
/tmp/adamTestMvnEoU0t8M/TempSuite3665638713354833399.adam
/tmp/adamTestMvnEoU0t8M/TempSuite3665638713354833399.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3665638713354833399.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite3665638713354833399.adam/._samples.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3665638713354833399.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3665638713354833399.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3665638713354833399.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite3665638713354833399.adam/_samples.avro
/tmp/adamTestMvnEoU0t8M/TempSuite3665638713354833399.adam/_header
/tmp/adamTestMvnEoU0t8M/TempSuite3665638713354833399.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite3665638713354833399.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3665638713354833399.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3665638713354833399.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite3665638713354833399.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3665638713354833399.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/8755327596304875389
/tmp/adamTestMvnEoU0t8M/8755327596304875389/genotypes.adam
/tmp/adamTestMvnEoU0t8M/8755327596304875389/genotypes.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/8755327596304875389/genotypes.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/8755327596304875389/genotypes.adam/._samples.avro.crc
/tmp/adamTestMvnEoU0t8M/8755327596304875389/genotypes.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/8755327596304875389/genotypes.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/8755327596304875389/genotypes.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/8755327596304875389/genotypes.adam/_samples.avro
/tmp/adamTestMvnEoU0t8M/8755327596304875389/genotypes.adam/_header
/tmp/adamTestMvnEoU0t8M/8755327596304875389/genotypes.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/8755327596304875389/genotypes.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/8755327596304875389/genotypes.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/8755327596304875389/genotypes.adam/_metadata
/tmp/adamTestMvnEoU0t8M/8755327596304875389/genotypes.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/8755327596304875389/genotypes.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite8224316108640077152
/tmp/adamTestMvnEoU0t8M/TempSuite188571292639663770
/tmp/adamTestMvnEoU0t8M/TempSuite7275930960354912014.adam
/tmp/adamTestMvnEoU0t8M/TempSuite7275930960354912014.adam/.part-00000-0a61b63a-d9d2-41d4-90b8-389f796eb773-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7275930960354912014.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7275930960354912014.adam/_header
/tmp/adamTestMvnEoU0t8M/TempSuite7275930960354912014.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite7275930960354912014.adam/part-00000-0a61b63a-d9d2-41d4-90b8-389f796eb773-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite7275930960354912014.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7275930960354912014.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7275930960354912014.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/unsorted.sam8545829051068437815.sam
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite5830737303149894811.gtf
/tmp/adamTestMvnEoU0t8M/TempSuite3422578519940815606
/tmp/adamTestMvnEoU0t8M/1557957500056-0
/tmp/adamTestMvnEoU0t8M/1557957500056-0/contigs.fa
/tmp/adamTestMvnEoU0t8M/1557957500056-0/contigs.fa/part-00000
/tmp/adamTestMvnEoU0t8M/1557957500056-0/contigs.fa/_SUCCESS
/tmp/adamTestMvnEoU0t8M/1557957500056-0/contigs.fa/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/1557957500056-0/contigs.fa/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/1557957500056-0/contigs.adam
/tmp/adamTestMvnEoU0t8M/1557957500056-0/contigs.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/1557957500056-0/contigs.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/1557957500056-0/contigs.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/1557957500056-0/contigs.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/1557957500056-0/contigs.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/1557957500056-0/contigs.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/1557957500056-0/contigs.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/1557957500056-0/contigs.adam/_metadata
/tmp/adamTestMvnEoU0t8M/1557957500056-0/contigs.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/1557957500056-0/contigs.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite1123893504290901746.adam
/tmp/adamTestMvnEoU0t8M/TempSuite1123893504290901746.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1123893504290901746.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite1123893504290901746.adam/._samples.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1123893504290901746.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1123893504290901746.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1123893504290901746.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite1123893504290901746.adam/_samples.avro
/tmp/adamTestMvnEoU0t8M/TempSuite1123893504290901746.adam/_header
/tmp/adamTestMvnEoU0t8M/TempSuite1123893504290901746.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite1123893504290901746.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1123893504290901746.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1123893504290901746.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite1123893504290901746.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1123893504290901746.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/2087597784923827441
/tmp/adamTestMvnEoU0t8M/2087597784923827441/genotypes.nested-annotations.adam
/tmp/adamTestMvnEoU0t8M/2087597784923827441/genotypes.nested-annotations.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/2087597784923827441/genotypes.nested-annotations.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/2087597784923827441/genotypes.nested-annotations.adam/._samples.avro.crc
/tmp/adamTestMvnEoU0t8M/2087597784923827441/genotypes.nested-annotations.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/2087597784923827441/genotypes.nested-annotations.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/2087597784923827441/genotypes.nested-annotations.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/2087597784923827441/genotypes.nested-annotations.adam/_samples.avro
/tmp/adamTestMvnEoU0t8M/2087597784923827441/genotypes.nested-annotations.adam/_header
/tmp/adamTestMvnEoU0t8M/2087597784923827441/genotypes.nested-annotations.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/2087597784923827441/genotypes.nested-annotations.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/2087597784923827441/genotypes.nested-annotations.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/2087597784923827441/genotypes.nested-annotations.adam/_metadata
/tmp/adamTestMvnEoU0t8M/2087597784923827441/genotypes.nested-annotations.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/2087597784923827441/genotypes.nested-annotations.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite1855003137219430940.adam
/tmp/adamTestMvnEoU0t8M/TempSuite1855003137219430940.adam/part-00000-cf576095-3cd0-4c7f-bedb-6899fd587029-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite1855003137219430940.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1855003137219430940.adam/.part-00000-cf576095-3cd0-4c7f-bedb-6899fd587029-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1855003137219430940.adam/_header
/tmp/adamTestMvnEoU0t8M/TempSuite1855003137219430940.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite1855003137219430940.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1855003137219430940.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1855003137219430940.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite5854691882346360292.adam
/tmp/adamTestMvnEoU0t8M/TempSuite5854691882346360292.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5854691882346360292.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/TempSuite5854691882346360292.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite5854691882346360292.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite5854691882346360292.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5854691882346360292.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5854691882346360292.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite5854691882346360292.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5854691882346360292.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/TempSuite5854691882346360292.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5854691882346360292.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite5854691882346360292.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5854691882346360292.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite5854691882346360292.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite5854691882346360292.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5854691882346360292.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5854691882346360292.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5854691882346360292.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite5854691882346360292.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5854691882346360292.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite6577393030112852701.adam
/tmp/adamTestMvnEoU0t8M/TempSuite6577393030112852701.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6577393030112852701.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite6577393030112852701.adam/._samples.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6577393030112852701.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6577393030112852701.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6577393030112852701.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite6577393030112852701.adam/_samples.avro
/tmp/adamTestMvnEoU0t8M/TempSuite6577393030112852701.adam/_header
/tmp/adamTestMvnEoU0t8M/TempSuite6577393030112852701.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite6577393030112852701.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6577393030112852701.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6577393030112852701.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite6577393030112852701.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6577393030112852701.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite5766380660619733170
/tmp/adamTestMvnEoU0t8M/TempSuite5524403533665603873.adam
/tmp/adamTestMvnEoU0t8M/TempSuite5524403533665603873.adam/._samples.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5524403533665603873.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5524403533665603873.adam/_samples.avro
/tmp/adamTestMvnEoU0t8M/TempSuite5524403533665603873.adam/part-00000-027f169c-e8f5-4ba8-bcfd-ccc8544a35fe-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite5524403533665603873.adam/_header
/tmp/adamTestMvnEoU0t8M/TempSuite5524403533665603873.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite5524403533665603873.adam/.part-00000-027f169c-e8f5-4ba8-bcfd-ccc8544a35fe-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5524403533665603873.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5524403533665603873.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5524403533665603873.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite2561171077573442859
/tmp/adamTestMvnEoU0t8M/TempSuite6314483433926602850
/tmp/adamTestMvnEoU0t8M/1557956852771-0
/tmp/adamTestMvnEoU0t8M/1557956852771-0/test.fa
/tmp/adamTestMvnEoU0t8M/1557956852771-0/test.fa/part-00000
/tmp/adamTestMvnEoU0t8M/1557956852771-0/test.fa/_SUCCESS
/tmp/adamTestMvnEoU0t8M/1557956852771-0/test.fa/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/1557956852771-0/test.fa/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6938251331068047877
/tmp/adamTestMvnEoU0t8M/3387400404936218410
/tmp/adamTestMvnEoU0t8M/3387400404936218410/.unordered.sam.crc
/tmp/adamTestMvnEoU0t8M/3387400404936218410/unordered.sam
/tmp/adamTestMvnEoU0t8M/TempSuite8752258975016245762
/tmp/adamTestMvnEoU0t8M/TempSuite8245646263939486078.adam
/tmp/adamTestMvnEoU0t8M/TempSuite8245646263939486078.adam/.part-00000-cd7e00ff-2ac5-4f49-995d-9bb9fb4c4acf-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8245646263939486078.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite8245646263939486078.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8245646263939486078.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8245646263939486078.adam/part-00000-cd7e00ff-2ac5-4f49-995d-9bb9fb4c4acf-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite8245646263939486078.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite9016129978908046024
/tmp/adamTestMvnEoU0t8M/TempSuite1564826055446259946.adam
/tmp/adamTestMvnEoU0t8M/TempSuite1564826055446259946.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1564826055446259946.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite1564826055446259946.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite1564826055446259946.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1564826055446259946.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1564826055446259946.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1564826055446259946.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite1564826055446259946.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1564826055446259946.adam/_header
/tmp/adamTestMvnEoU0t8M/TempSuite1564826055446259946.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite1564826055446259946.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1564826055446259946.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite1564826055446259946.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite1564826055446259946.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1564826055446259946.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1564826055446259946.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite1564826055446259946.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1564826055446259946.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/artificial.cram7512044002237002700.cram
/tmp/adamTestMvnEoU0t8M/TempSuite4570722679609728514
/tmp/adamTestMvnEoU0t8M/TempSuite6878559060872733667.bed
/tmp/adamTestMvnEoU0t8M/TempSuite6878559060872733667.bed/part-00000
/tmp/adamTestMvnEoU0t8M/TempSuite6878559060872733667.bed/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite6878559060872733667.bed/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6878559060872733667.bed/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite599649940098843491.bed
/tmp/adamTestMvnEoU0t8M/TempSuite599649940098843491.bed/part-00000
/tmp/adamTestMvnEoU0t8M/TempSuite599649940098843491.bed/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite599649940098843491.bed/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/TempSuite599649940098843491.bed/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/5900317298506322539
/tmp/adamTestMvnEoU0t8M/5900317298506322539/out.bam_head
/tmp/adamTestMvnEoU0t8M/5900317298506322539/.out.bam_head.crc
/tmp/adamTestMvnEoU0t8M/5900317298506322539/out.bam_tail
/tmp/adamTestMvnEoU0t8M/5900317298506322539/out.bam_tail/part-r-00001.bam
/tmp/adamTestMvnEoU0t8M/5900317298506322539/out.bam_tail/.part-r-00002.bam.crc
/tmp/adamTestMvnEoU0t8M/5900317298506322539/out.bam_tail/.part-r-00001.bam.crc
/tmp/adamTestMvnEoU0t8M/5900317298506322539/out.bam_tail/.part-r-00003.bam.crc
/tmp/adamTestMvnEoU0t8M/5900317298506322539/out.bam_tail/part-r-00002.bam
/tmp/adamTestMvnEoU0t8M/5900317298506322539/out.bam_tail/part-r-00000.bam
/tmp/adamTestMvnEoU0t8M/5900317298506322539/out.bam_tail/part-r-00003.bam
/tmp/adamTestMvnEoU0t8M/5900317298506322539/out.bam_tail/_SUCCESS
/tmp/adamTestMvnEoU0t8M/5900317298506322539/out.bam_tail/.part-r-00000.bam.crc
/tmp/adamTestMvnEoU0t8M/5900317298506322539/out.bam_tail/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/5900317298506322539/out.bam
/tmp/adamTestMvnEoU0t8M/5900317298506322539/.out.bam.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite9111895789077226268.gtf
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite9111895789077226268.gtf/part-00002
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite9111895789077226268.gtf/.part-00003.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite9111895789077226268.gtf/part-00000
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite9111895789077226268.gtf/part-00003
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite9111895789077226268.gtf/.part-00002.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite9111895789077226268.gtf/_SUCCESS
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite9111895789077226268.gtf/part-00001
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite9111895789077226268.gtf/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite9111895789077226268.gtf/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite9111895789077226268.gtf/.part-00001.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7454617315170210108
/tmp/adamTestMvnEoU0t8M/TempSuite6354213762402787261
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3410308094818245394.interval_list
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3410308094818245394.interval_list/part-00002
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3410308094818245394.interval_list/.part-00003.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3410308094818245394.interval_list/part-00000
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3410308094818245394.interval_list/part-00003
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3410308094818245394.interval_list/.part-00002.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3410308094818245394.interval_list/_SUCCESS
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3410308094818245394.interval_list/part-00001
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3410308094818245394.interval_list/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3410308094818245394.interval_list/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3410308094818245394.interval_list/.part-00001.crc
/tmp/adamTestMvnEoU0t8M/TempSuite185648142394766531.bed
/tmp/adamTestMvnEoU0t8M/TempSuite185648142394766531.bed/part-00002
/tmp/adamTestMvnEoU0t8M/TempSuite185648142394766531.bed/.part-00003.crc
/tmp/adamTestMvnEoU0t8M/TempSuite185648142394766531.bed/part-00000
/tmp/adamTestMvnEoU0t8M/TempSuite185648142394766531.bed/part-00003
/tmp/adamTestMvnEoU0t8M/TempSuite185648142394766531.bed/.part-00002.crc
/tmp/adamTestMvnEoU0t8M/TempSuite185648142394766531.bed/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite185648142394766531.bed/part-00001
/tmp/adamTestMvnEoU0t8M/TempSuite185648142394766531.bed/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/TempSuite185648142394766531.bed/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite185648142394766531.bed/.part-00001.crc
/tmp/adamTestMvnEoU0t8M/5215224047597347768
/tmp/adamTestMvnEoU0t8M/5215224047597347768/small.vcf.bgz
/tmp/adamTestMvnEoU0t8M/5215224047597347768/.small.vcf.bgz.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1337186685402158879.adam
/tmp/adamTestMvnEoU0t8M/TempSuite1337186685402158879.adam/.part-00000-d96a2976-0b9b-4a20-9b28-80aa2b99be3d-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1337186685402158879.adam/.part-00001-d96a2976-0b9b-4a20-9b28-80aa2b99be3d-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1337186685402158879.adam/part-00000-d96a2976-0b9b-4a20-9b28-80aa2b99be3d-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite1337186685402158879.adam/part-00001-d96a2976-0b9b-4a20-9b28-80aa2b99be3d-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite1337186685402158879.adam/._samples.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1337186685402158879.adam/_samples.avro
/tmp/adamTestMvnEoU0t8M/TempSuite1337186685402158879.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite1337186685402158879.adam/part-00002-d96a2976-0b9b-4a20-9b28-80aa2b99be3d-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite1337186685402158879.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1337186685402158879.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1337186685402158879.adam/.part-00002-d96a2976-0b9b-4a20-9b28-80aa2b99be3d-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1337186685402158879.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite8380621292181923428
/tmp/adamTestMvnEoU0t8M/TempSuite4833271400274985209
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6488204999934567222
/tmp/adamTestMvnEoU0t8M/TempSuite8375160347013598720
/tmp/adamTestMvnEoU0t8M/TempSuite702706028125262225
/tmp/adamTestMvnEoU0t8M/TempSuite6885394612410019852_2.fq
/tmp/adamTestMvnEoU0t8M/TempSuite6885394612410019852_2.fq/part-00000
/tmp/adamTestMvnEoU0t8M/TempSuite6885394612410019852_2.fq/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite6885394612410019852_2.fq/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6885394612410019852_2.fq/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite496243249260646350
/tmp/adamTestMvnEoU0t8M/adam-cli.TransformFeaturesSuite5214843618036211450.adam
/tmp/adamTestMvnEoU0t8M/adam-cli.TransformFeaturesSuite5214843618036211450.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/adam-cli.TransformFeaturesSuite5214843618036211450.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/adam-cli.TransformFeaturesSuite5214843618036211450.adam/._samples.avro.crc
/tmp/adamTestMvnEoU0t8M/adam-cli.TransformFeaturesSuite5214843618036211450.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/adam-cli.TransformFeaturesSuite5214843618036211450.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/adam-cli.TransformFeaturesSuite5214843618036211450.adam/_samples.avro
/tmp/adamTestMvnEoU0t8M/adam-cli.TransformFeaturesSuite5214843618036211450.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/adam-cli.TransformFeaturesSuite5214843618036211450.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/adam-cli.TransformFeaturesSuite5214843618036211450.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/adam-cli.TransformFeaturesSuite5214843618036211450.adam/_metadata
/tmp/adamTestMvnEoU0t8M/adam-cli.TransformFeaturesSuite5214843618036211450.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/adam-cli.TransformFeaturesSuite5214843618036211450.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite736015005369604528
/tmp/adamTestMvnEoU0t8M/TempSuite1144867402814901490
/tmp/adamTestMvnEoU0t8M/TempSuite1753553702659849140.adam
/tmp/adamTestMvnEoU0t8M/TempSuite1753553702659849140.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1753553702659849140.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/TempSuite1753553702659849140.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite1753553702659849140.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1753553702659849140.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite1753553702659849140.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/TempSuite1753553702659849140.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1753553702659849140.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite1753553702659849140.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1753553702659849140.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1753553702659849140.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1753553702659849140.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite1753553702659849140.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1753553702659849140.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite141543215797605070
/tmp/adamTestMvnEoU0t8M/TempSuite496243249260646350.bam
/tmp/adamTestMvnEoU0t8M/TempSuite496243249260646350.bam/part-r-00000.bam
/tmp/adamTestMvnEoU0t8M/TempSuite496243249260646350.bam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite496243249260646350.bam/.part-r-00000.bam.crc
/tmp/adamTestMvnEoU0t8M/TempSuite496243249260646350.bam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7093999922648379422.bed
/tmp/adamTestMvnEoU0t8M/TempSuite7093999922648379422.bed/part-00000
/tmp/adamTestMvnEoU0t8M/TempSuite7093999922648379422.bed/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite7093999922648379422.bed/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7093999922648379422.bed/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8001818052641621171.bed
/tmp/adamTestMvnEoU0t8M/TempSuite8001818052641621171.bed/part-00000
/tmp/adamTestMvnEoU0t8M/TempSuite8001818052641621171.bed/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite8001818052641621171.bed/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8001818052641621171.bed/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4426585655261723719.adam
/tmp/adamTestMvnEoU0t8M/TempSuite4426585655261723719.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4426585655261723719.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/TempSuite4426585655261723719.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite4426585655261723719.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite4426585655261723719.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4426585655261723719.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4426585655261723719.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite4426585655261723719.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4426585655261723719.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/TempSuite4426585655261723719.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4426585655261723719.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite4426585655261723719.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4426585655261723719.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite4426585655261723719.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite4426585655261723719.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4426585655261723719.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4426585655261723719.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4426585655261723719.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite4426585655261723719.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4426585655261723719.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite5703715725812382492
/tmp/adamTestMvnEoU0t8M/unordered.sam8353417553324009030.sam
/tmp/adamTestMvnEoU0t8M/.FeatureDatasetFunctionsSuite972963908101288164.interval_list.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5198920459772504883
/tmp/adamTestMvnEoU0t8M/TempSuite5996960554874589880
/tmp/adamTestMvnEoU0t8M/.FeatureDatasetFunctionsSuite3231233770752078762.gff3.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6227452441314127263.gff3
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6227452441314127263.gff3/part-00002
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6227452441314127263.gff3/.part-00003.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6227452441314127263.gff3/part-00000
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6227452441314127263.gff3/part-00003
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6227452441314127263.gff3/.part-00002.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6227452441314127263.gff3/_SUCCESS
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6227452441314127263.gff3/part-00001
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6227452441314127263.gff3/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6227452441314127263.gff3/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6227452441314127263.gff3/.part-00001.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5989502162987793220
/tmp/adamTestMvnEoU0t8M/TempSuite1674926872114188885
/tmp/adamTestMvnEoU0t8M/TempSuite7116003864141843381.adam
/tmp/adamTestMvnEoU0t8M/TempSuite7116003864141843381.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/TempSuite7116003864141843381.adam/._partitionedByStartPos.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7116003864141843381.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/TempSuite7116003864141843381.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7116003864141843381.adam/_partitionedByStartPos
/tmp/adamTestMvnEoU0t8M/TempSuite7116003864141843381.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite7116003864141843381.adam/referenceName=2
/tmp/adamTestMvnEoU0t8M/TempSuite7116003864141843381.adam/referenceName=2/positionBin=189
/tmp/adamTestMvnEoU0t8M/TempSuite7116003864141843381.adam/referenceName=2/positionBin=189/.part-00000-d83c4032-3994-435f-9995-1fac36941012.c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7116003864141843381.adam/referenceName=2/positionBin=189/part-00000-d83c4032-3994-435f-9995-1fac36941012.c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite7116003864141843381.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7116003864141843381.adam/referenceName=1
/tmp/adamTestMvnEoU0t8M/TempSuite7116003864141843381.adam/referenceName=1/positionBin=240
/tmp/adamTestMvnEoU0t8M/TempSuite7116003864141843381.adam/referenceName=1/positionBin=240/.part-00000-d83c4032-3994-435f-9995-1fac36941012.c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7116003864141843381.adam/referenceName=1/positionBin=240/part-00000-d83c4032-3994-435f-9995-1fac36941012.c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite7116003864141843381.adam/referenceName=1/positionBin=26
/tmp/adamTestMvnEoU0t8M/TempSuite7116003864141843381.adam/referenceName=1/positionBin=26/.part-00000-d83c4032-3994-435f-9995-1fac36941012.c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7116003864141843381.adam/referenceName=1/positionBin=26/part-00000-d83c4032-3994-435f-9995-1fac36941012.c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite7116003864141843381.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7116003864141843381.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7116003864141843381.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite8993668401263324697.vcf
/tmp/adamTestMvnEoU0t8M/TempSuite8993668401263324697.vcf/part-r-00000
/tmp/adamTestMvnEoU0t8M/TempSuite8993668401263324697.vcf/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite8993668401263324697.vcf/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8993668401263324697.vcf/.part-r-00000.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite7193589591146314787.gff3
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite7193589591146314787.gff3/part-00002
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite7193589591146314787.gff3/.part-00003.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite7193589591146314787.gff3/part-00000
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite7193589591146314787.gff3/part-00003
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite7193589591146314787.gff3/.part-00002.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite7193589591146314787.gff3/_SUCCESS
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite7193589591146314787.gff3/part-00001
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite7193589591146314787.gff3/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite7193589591146314787.gff3/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite7193589591146314787.gff3/.part-00001.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8245646263939486078
/tmp/adamTestMvnEoU0t8M/TempSuite2602436627079163269
/tmp/adamTestMvnEoU0t8M/unordered.sam3511816417724272248.sam
/tmp/adamTestMvnEoU0t8M/TempSuite5761803869780760657
/tmp/adamTestMvnEoU0t8M/TempSuite2181636601654099692reads12.sam
/tmp/adamTestMvnEoU0t8M/sorted.sam765702026533869354.sam
/tmp/adamTestMvnEoU0t8M/TempSuite6786657876849724437
/tmp/adamTestMvnEoU0t8M/TempSuite5524403533665603873
/tmp/adamTestMvnEoU0t8M/TempSuite5690764516138967938
/tmp/adamTestMvnEoU0t8M/TempSuite1986668377157398330.bed
/tmp/adamTestMvnEoU0t8M/TempSuite1986668377157398330.bed/part-00000
/tmp/adamTestMvnEoU0t8M/TempSuite1986668377157398330.bed/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite1986668377157398330.bed/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1986668377157398330.bed/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1317487312107915609
/tmp/adamTestMvnEoU0t8M/TempSuite2230993121681716026
/tmp/adamTestMvnEoU0t8M/TempSuite1337186685402158879
/tmp/adamTestMvnEoU0t8M/TempSuite7634304226183097405
/tmp/adamTestMvnEoU0t8M/TempSuite6335159097407803377fragments.adam
/tmp/adamTestMvnEoU0t8M/TempSuite6335159097407803377fragments.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6335159097407803377fragments.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/TempSuite6335159097407803377fragments.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite6335159097407803377fragments.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6335159097407803377fragments.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite6335159097407803377fragments.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/TempSuite6335159097407803377fragments.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6335159097407803377fragments.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite6335159097407803377fragments.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6335159097407803377fragments.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6335159097407803377fragments.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6335159097407803377fragments.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite6335159097407803377fragments.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6335159097407803377fragments.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/javaAC7129252028924787463
/tmp/adamTestMvnEoU0t8M/javaAC7129252028924787463/testRdd.coverage.adam
/tmp/adamTestMvnEoU0t8M/javaAC7129252028924787463/testRdd.coverage.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/javaAC7129252028924787463/testRdd.coverage.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/javaAC7129252028924787463/testRdd.coverage.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnEoU0t8M/javaAC7129252028924787463/testRdd.coverage.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/javaAC7129252028924787463/testRdd.coverage.adam/._samples.avro.crc
/tmp/adamTestMvnEoU0t8M/javaAC7129252028924787463/testRdd.coverage.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/javaAC7129252028924787463/testRdd.coverage.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/javaAC7129252028924787463/testRdd.coverage.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/javaAC7129252028924787463/testRdd.coverage.adam/_samples.avro
/tmp/adamTestMvnEoU0t8M/javaAC7129252028924787463/testRdd.coverage.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/javaAC7129252028924787463/testRdd.coverage.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/javaAC7129252028924787463/testRdd.coverage.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnEoU0t8M/javaAC7129252028924787463/testRdd.coverage.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnEoU0t8M/javaAC7129252028924787463/testRdd.coverage.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/javaAC7129252028924787463/testRdd.coverage.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/javaAC7129252028924787463/testRdd.coverage.adam/_metadata
/tmp/adamTestMvnEoU0t8M/javaAC7129252028924787463/testRdd.coverage.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/javaAC7129252028924787463/testRdd.coverage.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite1376268757687311357.gff3
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite1376268757687311357.gff3/part-00002
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite1376268757687311357.gff3/.part-00003.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite1376268757687311357.gff3/part-00000
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite1376268757687311357.gff3/part-00003
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite1376268757687311357.gff3/.part-00002.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite1376268757687311357.gff3/_SUCCESS
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite1376268757687311357.gff3/part-00001
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite1376268757687311357.gff3/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite1376268757687311357.gff3/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite1376268757687311357.gff3/.part-00001.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite406949198730291376
/tmp/adamTestMvnEoU0t8M/TempSuite2210285960134309384.fq
/tmp/adamTestMvnEoU0t8M/TempSuite2210285960134309384.fq/part-00000
/tmp/adamTestMvnEoU0t8M/TempSuite2210285960134309384.fq/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite2210285960134309384.fq/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2210285960134309384.fq/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5470149956093826468
/tmp/adamTestMvnEoU0t8M/TempSuite5470149956093826468.adam
/tmp/adamTestMvnEoU0t8M/TempSuite5470149956093826468.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/TempSuite5470149956093826468.adam/.part-00000-9361ea68-c936-41f0-8e7e-9e0afd0e26a3-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5470149956093826468.adam/part-00000-9361ea68-c936-41f0-8e7e-9e0afd0e26a3-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite5470149956093826468.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/TempSuite5470149956093826468.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5470149956093826468.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite5470149956093826468.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5470149956093826468.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5470149956093826468.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5470149956093826468.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite5618860529695125099.adam
/tmp/adamTestMvnEoU0t8M/TempSuite5618860529695125099.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5618860529695125099.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite5618860529695125099.adam/._samples.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5618860529695125099.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5618860529695125099.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5618860529695125099.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite5618860529695125099.adam/_samples.avro
/tmp/adamTestMvnEoU0t8M/TempSuite5618860529695125099.adam/_header
/tmp/adamTestMvnEoU0t8M/TempSuite5618860529695125099.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite5618860529695125099.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5618860529695125099.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5618860529695125099.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite5618860529695125099.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5618860529695125099.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite784281684156439892
/tmp/adamTestMvnEoU0t8M/TempSuite8318087704233739757.adam
/tmp/adamTestMvnEoU0t8M/TempSuite8318087704233739757.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8318087704233739757.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite8318087704233739757.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8318087704233739757.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8318087704233739757.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite8318087704233739757.adam/_header
/tmp/adamTestMvnEoU0t8M/TempSuite8318087704233739757.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite8318087704233739757.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8318087704233739757.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8318087704233739757.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite8318087704233739757.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8318087704233739757.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6505817405016198177.interval_list
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6505817405016198177.interval_list/part-00002
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6505817405016198177.interval_list/.part-00003.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6505817405016198177.interval_list/part-00000
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6505817405016198177.interval_list/part-00003
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6505817405016198177.interval_list/.part-00002.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6505817405016198177.interval_list/_SUCCESS
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6505817405016198177.interval_list/part-00001
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6505817405016198177.interval_list/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6505817405016198177.interval_list/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6505817405016198177.interval_list/.part-00001.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6822411113037560140
/tmp/adamTestMvnEoU0t8M/.TempSuite3872231978081642071.sam.crc
/tmp/adamTestMvnEoU0t8M/TempSuite746912482229356011
/tmp/adamTestMvnEoU0t8M/TempSuite5093744458437221197
/tmp/adamTestMvnEoU0t8M/TempSuite2471952556133502807
/tmp/adamTestMvnEoU0t8M/bqsr1.sam6349578148816584814.sam
/tmp/adamTestMvnEoU0t8M/.FeatureDatasetFunctionsSuite8543299126102489560.bed.crc
/tmp/adamTestMvnEoU0t8M/6587410403527117994
/tmp/adamTestMvnEoU0t8M/6587410403527117994/binned.adam
/tmp/adamTestMvnEoU0t8M/6587410403527117994/binned.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/6587410403527117994/binned.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/6587410403527117994/binned.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/6587410403527117994/binned.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/6587410403527117994/binned.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/6587410403527117994/binned.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/6587410403527117994/binned.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/6587410403527117994/binned.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/6587410403527117994/binned.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/6587410403527117994/binned.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/6587410403527117994/binned.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/6587410403527117994/binned.adam/_metadata
/tmp/adamTestMvnEoU0t8M/6587410403527117994/binned.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/6587410403527117994/binned.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite3343086239702520344.adam
/tmp/adamTestMvnEoU0t8M/TempSuite3343086239702520344.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3343086239702520344.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite3343086239702520344.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite3343086239702520344.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3343086239702520344.adam/.part-r-00004.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3343086239702520344.adam/._samples.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3343086239702520344.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3343086239702520344.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite3343086239702520344.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3343086239702520344.adam/part-r-00004.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite3343086239702520344.adam/_samples.avro
/tmp/adamTestMvnEoU0t8M/TempSuite3343086239702520344.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite3343086239702520344.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3343086239702520344.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite3343086239702520344.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite3343086239702520344.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3343086239702520344.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3343086239702520344.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite3343086239702520344.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3343086239702520344.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/2754415379814062150
/tmp/adamTestMvnEoU0t8M/2754415379814062150/genotypes.adam
/tmp/adamTestMvnEoU0t8M/2754415379814062150/genotypes.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/2754415379814062150/genotypes.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/2754415379814062150/genotypes.adam/._samples.avro.crc
/tmp/adamTestMvnEoU0t8M/2754415379814062150/genotypes.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/2754415379814062150/genotypes.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/2754415379814062150/genotypes.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/2754415379814062150/genotypes.adam/_samples.avro
/tmp/adamTestMvnEoU0t8M/2754415379814062150/genotypes.adam/_header
/tmp/adamTestMvnEoU0t8M/2754415379814062150/genotypes.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/2754415379814062150/genotypes.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/2754415379814062150/genotypes.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/2754415379814062150/genotypes.adam/_metadata
/tmp/adamTestMvnEoU0t8M/2754415379814062150/genotypes.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/2754415379814062150/genotypes.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite1057248652727705257
/tmp/adamTestMvnEoU0t8M/TempSuite2968943036492499064.adam
/tmp/adamTestMvnEoU0t8M/TempSuite2968943036492499064.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2968943036492499064.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/TempSuite2968943036492499064.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite2968943036492499064.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2968943036492499064.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite2968943036492499064.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/TempSuite2968943036492499064.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2968943036492499064.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite2968943036492499064.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2968943036492499064.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2968943036492499064.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2968943036492499064.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite2968943036492499064.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2968943036492499064.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite8856011397928971824
/tmp/adamTestMvnEoU0t8M/2659282423704867730
/tmp/adamTestMvnEoU0t8M/2659282423704867730/coverage.adam
/tmp/adamTestMvnEoU0t8M/2659282423704867730/coverage.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/2659282423704867730/coverage.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/2659282423704867730/coverage.adam/._samples.avro.crc
/tmp/adamTestMvnEoU0t8M/2659282423704867730/coverage.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/2659282423704867730/coverage.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/2659282423704867730/coverage.adam/_samples.avro
/tmp/adamTestMvnEoU0t8M/2659282423704867730/coverage.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/2659282423704867730/coverage.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/2659282423704867730/coverage.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/2659282423704867730/coverage.adam/_metadata
/tmp/adamTestMvnEoU0t8M/2659282423704867730/coverage.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/2659282423704867730/coverage.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite4023823909757523285.fa
/tmp/adamTestMvnEoU0t8M/TempSuite4023823909757523285.fa/part-00000
/tmp/adamTestMvnEoU0t8M/TempSuite4023823909757523285.fa/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite4023823909757523285.fa/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4023823909757523285.fa/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8115035058669156852
/tmp/adamTestMvnEoU0t8M/TempSuite8856011397928971824.bed
/tmp/adamTestMvnEoU0t8M/TempSuite8856011397928971824.bed/part-00000
/tmp/adamTestMvnEoU0t8M/TempSuite8856011397928971824.bed/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite8856011397928971824.bed/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8856011397928971824.bed/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite5830737303149894811
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite9016129978908046024.gtf
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite9016129978908046024.gtf/part-00002
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite9016129978908046024.gtf/.part-00003.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite9016129978908046024.gtf/part-00000
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite9016129978908046024.gtf/part-00003
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite9016129978908046024.gtf/.part-00002.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite9016129978908046024.gtf/_SUCCESS
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite9016129978908046024.gtf/part-00001
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite9016129978908046024.gtf/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite9016129978908046024.gtf/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite9016129978908046024.gtf/.part-00001.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7823504943274276326
/tmp/adamTestMvnEoU0t8M/TempSuite5933876896679472214
/tmp/adamTestMvnEoU0t8M/6818147470164692790
/tmp/adamTestMvnEoU0t8M/6818147470164692790/genotypes.lex.adam
/tmp/adamTestMvnEoU0t8M/6818147470164692790/genotypes.lex.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/6818147470164692790/genotypes.lex.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/6818147470164692790/genotypes.lex.adam/._samples.avro.crc
/tmp/adamTestMvnEoU0t8M/6818147470164692790/genotypes.lex.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/6818147470164692790/genotypes.lex.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/6818147470164692790/genotypes.lex.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/6818147470164692790/genotypes.lex.adam/_samples.avro
/tmp/adamTestMvnEoU0t8M/6818147470164692790/genotypes.lex.adam/_header
/tmp/adamTestMvnEoU0t8M/6818147470164692790/genotypes.lex.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/6818147470164692790/genotypes.lex.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/6818147470164692790/genotypes.lex.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/6818147470164692790/genotypes.lex.adam/_metadata
/tmp/adamTestMvnEoU0t8M/6818147470164692790/genotypes.lex.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/6818147470164692790/genotypes.lex.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite25047860406153071.adam
/tmp/adamTestMvnEoU0t8M/TempSuite25047860406153071.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/TempSuite25047860406153071.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/TempSuite25047860406153071.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite25047860406153071.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite25047860406153071.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite25047860406153071.adam/part-00000-1ce0fb0e-71b0-4c88-817c-a7545373f371-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite25047860406153071.adam/.part-00000-1ce0fb0e-71b0-4c88-817c-a7545373f371-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite25047860406153071.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite25047860406153071.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite25047860406153071.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/small.sam4440574403177938575.sam
/tmp/adamTestMvnEoU0t8M/TempSuite8572025794122880220
/tmp/adamTestMvnEoU0t8M/TempSuite4545431884777132851
/tmp/adamTestMvnEoU0t8M/TempSuite5071176245738225283.adam
/tmp/adamTestMvnEoU0t8M/TempSuite5071176245738225283.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5071176245738225283.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite5071176245738225283.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite5071176245738225283.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5071176245738225283.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5071176245738225283.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5071176245738225283.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite5071176245738225283.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5071176245738225283.adam/_header
/tmp/adamTestMvnEoU0t8M/TempSuite5071176245738225283.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite5071176245738225283.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5071176245738225283.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite5071176245738225283.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite5071176245738225283.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5071176245738225283.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5071176245738225283.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite5071176245738225283.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5071176245738225283.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/random.vcf4766803853058323175.vcf
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite5189090959772134791
/tmp/adamTestMvnEoU0t8M/TempSuite9195228991744875904
/tmp/adamTestMvnEoU0t8M/5464712054563432617
/tmp/adamTestMvnEoU0t8M/5464712054563432617/..gff3.crc
/tmp/adamTestMvnEoU0t8M/5464712054563432617/.gff3
/tmp/adamTestMvnEoU0t8M/TempSuite1313053007724275760
/tmp/adamTestMvnEoU0t8M/TempSuite4570722679609728514.adam
/tmp/adamTestMvnEoU0t8M/TempSuite4570722679609728514.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite4570722679609728514.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4570722679609728514.adam/.part-00000-b3561a85-1874-424a-bb4b-85c84ebb0a74-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4570722679609728514.adam/part-00000-b3561a85-1874-424a-bb4b-85c84ebb0a74-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite4570722679609728514.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4570722679609728514.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/random.vcf5671728788233450054.vcf
/tmp/adamTestMvnEoU0t8M/TempSuite7819026702478588955.adam
/tmp/adamTestMvnEoU0t8M/TempSuite7819026702478588955.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/TempSuite7819026702478588955.adam/part-00002-f2279f4c-c344-438a-81f3-c3b6c0bcdfc0-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite7819026702478588955.adam/.part-00000-f2279f4c-c344-438a-81f3-c3b6c0bcdfc0-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7819026702478588955.adam/.part-00001-f2279f4c-c344-438a-81f3-c3b6c0bcdfc0-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7819026702478588955.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/TempSuite7819026702478588955.adam/part-00000-f2279f4c-c344-438a-81f3-c3b6c0bcdfc0-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite7819026702478588955.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7819026702478588955.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite7819026702478588955.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7819026702478588955.adam/part-00001-f2279f4c-c344-438a-81f3-c3b6c0bcdfc0-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite7819026702478588955.adam/.part-00002-f2279f4c-c344-438a-81f3-c3b6c0bcdfc0-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7819026702478588955.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7819026702478588955.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7819026702478588955.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/3386992965627860629
/tmp/adamTestMvnEoU0t8M/3386992965627860629/coverage.adam
/tmp/adamTestMvnEoU0t8M/3386992965627860629/coverage.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/3386992965627860629/coverage.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/3386992965627860629/coverage.adam/._samples.avro.crc
/tmp/adamTestMvnEoU0t8M/3386992965627860629/coverage.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/3386992965627860629/coverage.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/3386992965627860629/coverage.adam/_samples.avro
/tmp/adamTestMvnEoU0t8M/3386992965627860629/coverage.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/3386992965627860629/coverage.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/3386992965627860629/coverage.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/3386992965627860629/coverage.adam/_metadata
/tmp/adamTestMvnEoU0t8M/3386992965627860629/coverage.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/3386992965627860629/coverage.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite3753716692246617187.adam
/tmp/adamTestMvnEoU0t8M/TempSuite3753716692246617187.adam/part-00000-f61b2b29-7b1d-4dde-9c5d-cd2815633843-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite3753716692246617187.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/TempSuite3753716692246617187.adam/.part-00002-f61b2b29-7b1d-4dde-9c5d-cd2815633843-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3753716692246617187.adam/part-00002-f61b2b29-7b1d-4dde-9c5d-cd2815633843-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite3753716692246617187.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/TempSuite3753716692246617187.adam/.part-00001-f61b2b29-7b1d-4dde-9c5d-cd2815633843-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3753716692246617187.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3753716692246617187.adam/part-00001-f61b2b29-7b1d-4dde-9c5d-cd2815633843-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite3753716692246617187.adam/.part-00000-f61b2b29-7b1d-4dde-9c5d-cd2815633843-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3753716692246617187.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite3753716692246617187.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3753716692246617187.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3753716692246617187.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3753716692246617187.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite7321953706685809220
/tmp/adamTestMvnEoU0t8M/TempSuite2602436627079163269.adam
/tmp/adamTestMvnEoU0t8M/TempSuite2602436627079163269.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2602436627079163269.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/TempSuite2602436627079163269.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite2602436627079163269.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2602436627079163269.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite2602436627079163269.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/TempSuite2602436627079163269.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2602436627079163269.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite2602436627079163269.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2602436627079163269.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2602436627079163269.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2602436627079163269.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite2602436627079163269.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2602436627079163269.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/reads128185725487762601173
/tmp/adamTestMvnEoU0t8M/reads128185725487762601173/reads12.fq
/tmp/adamTestMvnEoU0t8M/reads128185725487762601173/reads12.fq/part-00000
/tmp/adamTestMvnEoU0t8M/reads128185725487762601173/reads12.fq/_SUCCESS
/tmp/adamTestMvnEoU0t8M/reads128185725487762601173/reads12.fq/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/reads128185725487762601173/reads12.fq/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8603484717416214367.bed
/tmp/adamTestMvnEoU0t8M/TempSuite8603484717416214367.bed/part-00000
/tmp/adamTestMvnEoU0t8M/TempSuite8603484717416214367.bed/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite8603484717416214367.bed/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8603484717416214367.bed/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/chr20.250k.fa.gz8288992072514789814.250k.fa.gz
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6130819379138089232.narrowPeak
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6130819379138089232.narrowPeak/part-00002
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6130819379138089232.narrowPeak/.part-00003.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6130819379138089232.narrowPeak/part-00000
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6130819379138089232.narrowPeak/part-00003
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6130819379138089232.narrowPeak/.part-00002.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6130819379138089232.narrowPeak/_SUCCESS
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6130819379138089232.narrowPeak/part-00001
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6130819379138089232.narrowPeak/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6130819379138089232.narrowPeak/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6130819379138089232.narrowPeak/.part-00001.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4603293272092867130
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite7987235682986401229.bed
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite7987235682986401229.bed/part-00002
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite7987235682986401229.bed/.part-00003.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite7987235682986401229.bed/part-00000
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite7987235682986401229.bed/part-00003
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite7987235682986401229.bed/.part-00002.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite7987235682986401229.bed/_SUCCESS
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite7987235682986401229.bed/part-00001
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite7987235682986401229.bed/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite7987235682986401229.bed/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite7987235682986401229.bed/.part-00001.crc
/tmp/adamTestMvnEoU0t8M/ordered.sam5304220470990168385.sam
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite141543215797605070.bed
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite141543215797605070.bed/part-00002
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite141543215797605070.bed/.part-00003.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite141543215797605070.bed/part-00000
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite141543215797605070.bed/part-00003
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite141543215797605070.bed/.part-00002.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite141543215797605070.bed/_SUCCESS
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite141543215797605070.bed/part-00001
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite141543215797605070.bed/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite141543215797605070.bed/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite141543215797605070.bed/.part-00001.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3536622298833980921.bed
/tmp/adamTestMvnEoU0t8M/TempSuite3536622298833980921.bed/part-00000
/tmp/adamTestMvnEoU0t8M/TempSuite3536622298833980921.bed/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite3536622298833980921.bed/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3536622298833980921.bed/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2193175034595412554.sam
/tmp/adamTestMvnEoU0t8M/TempSuite2193175034595412554.sam/part-r-00000.sam
/tmp/adamTestMvnEoU0t8M/TempSuite2193175034595412554.sam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite2193175034595412554.sam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2193175034595412554.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6928511340018709177.adam
/tmp/adamTestMvnEoU0t8M/TempSuite6928511340018709177.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/TempSuite6928511340018709177.adam/.part-00002-e68dbf0f-1ab4-4fe3-82a6-43b4d863dcf7-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6928511340018709177.adam/.part-00001-e68dbf0f-1ab4-4fe3-82a6-43b4d863dcf7-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6928511340018709177.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/TempSuite6928511340018709177.adam/part-00000-e68dbf0f-1ab4-4fe3-82a6-43b4d863dcf7-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite6928511340018709177.adam/part-00002-e68dbf0f-1ab4-4fe3-82a6-43b4d863dcf7-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite6928511340018709177.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6928511340018709177.adam/part-00001-e68dbf0f-1ab4-4fe3-82a6-43b4d863dcf7-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite6928511340018709177.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite6928511340018709177.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6928511340018709177.adam/.part-00000-e68dbf0f-1ab4-4fe3-82a6-43b4d863dcf7-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6928511340018709177.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6928511340018709177.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6928511340018709177.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite2311389357195826229
/tmp/adamTestMvnEoU0t8M/TempSuite6980317967086837937_2.fq
/tmp/adamTestMvnEoU0t8M/chr20.250k.fa.gz5656909042465556831.250k.fa.gz
/tmp/adamTestMvnEoU0t8M/TempSuite7618950960868392577
/tmp/adamTestMvnEoU0t8M/reads7259960335329063433
/tmp/adamTestMvnEoU0t8M/reads7259960335329063433/reads2.fq
/tmp/adamTestMvnEoU0t8M/reads7259960335329063433/reads2.fq/part-00000
/tmp/adamTestMvnEoU0t8M/reads7259960335329063433/reads2.fq/_SUCCESS
/tmp/adamTestMvnEoU0t8M/reads7259960335329063433/reads2.fq/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/reads7259960335329063433/reads2.fq/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/reads7259960335329063433/reads1.fq
/tmp/adamTestMvnEoU0t8M/reads7259960335329063433/reads1.fq/part-00000
/tmp/adamTestMvnEoU0t8M/reads7259960335329063433/reads1.fq/_SUCCESS
/tmp/adamTestMvnEoU0t8M/reads7259960335329063433/reads1.fq/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/reads7259960335329063433/reads1.fq/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6855438828807373604
/tmp/adamTestMvnEoU0t8M/TempSuite750774753155510783.bed
/tmp/adamTestMvnEoU0t8M/TempSuite750774753155510783.bed/part-00000
/tmp/adamTestMvnEoU0t8M/TempSuite750774753155510783.bed/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite750774753155510783.bed/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/TempSuite750774753155510783.bed/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/7344601337712506902
/tmp/adamTestMvnEoU0t8M/7344601337712506902/.ordered.sam.crc
/tmp/adamTestMvnEoU0t8M/7344601337712506902/ordered.sam
/tmp/adamTestMvnEoU0t8M/4815551791763187175
/tmp/adamTestMvnEoU0t8M/4815551791763187175/sorted-variants.lex.vcf
/tmp/adamTestMvnEoU0t8M/4815551791763187175/.sorted-variants.lex.vcf.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3918009048644189143
/tmp/adamTestMvnEoU0t8M/TempSuite6855438828807373604.2.adam
/tmp/adamTestMvnEoU0t8M/TempSuite6855438828807373604.2.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6855438828807373604.2.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/TempSuite6855438828807373604.2.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite6855438828807373604.2.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6855438828807373604.2.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite6855438828807373604.2.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/TempSuite6855438828807373604.2.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6855438828807373604.2.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite6855438828807373604.2.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6855438828807373604.2.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6855438828807373604.2.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6855438828807373604.2.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite6855438828807373604.2.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6855438828807373604.2.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/reads123378415011512722691
/tmp/adamTestMvnEoU0t8M/reads123378415011512722691/reads12.sam
/tmp/adamTestMvnEoU0t8M/reads123378415011512722691/reads12.sam/part-r-00000.sam
/tmp/adamTestMvnEoU0t8M/reads123378415011512722691/reads12.sam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/reads123378415011512722691/reads12.sam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/reads123378415011512722691/reads12.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnEoU0t8M/sample1.queryname.sam8475316599842431785.queryname.sam
/tmp/adamTestMvnEoU0t8M/TempSuite6161484189122331218.bed
/tmp/adamTestMvnEoU0t8M/TempSuite6161484189122331218.bed/part-00002
/tmp/adamTestMvnEoU0t8M/TempSuite6161484189122331218.bed/.part-00003.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6161484189122331218.bed/part-00000
/tmp/adamTestMvnEoU0t8M/TempSuite6161484189122331218.bed/part-00003
/tmp/adamTestMvnEoU0t8M/TempSuite6161484189122331218.bed/.part-00002.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6161484189122331218.bed/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite6161484189122331218.bed/part-00001
/tmp/adamTestMvnEoU0t8M/TempSuite6161484189122331218.bed/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6161484189122331218.bed/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6161484189122331218.bed/.part-00001.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2832087827007633352
/tmp/adamTestMvnEoU0t8M/TempSuite2110238590408500258.sam
/tmp/adamTestMvnEoU0t8M/TempSuite2110238590408500258.sam/part-r-00000.sam
/tmp/adamTestMvnEoU0t8M/TempSuite2110238590408500258.sam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite2110238590408500258.sam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2110238590408500258.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8087700569715236982
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite5729665498599968385
/tmp/adamTestMvnEoU0t8M/1000040622887512972
/tmp/adamTestMvnEoU0t8M/1000040622887512972/.unordered.sam.crc
/tmp/adamTestMvnEoU0t8M/1000040622887512972/unordered.sam
/tmp/adamTestMvnEoU0t8M/TempSuite4222835361581997133
/tmp/adamTestMvnEoU0t8M/TempSuite2882552057885778457.adam
/tmp/adamTestMvnEoU0t8M/TempSuite2882552057885778457.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2882552057885778457.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/TempSuite2882552057885778457.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite2882552057885778457.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite2882552057885778457.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2882552057885778457.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2882552057885778457.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite2882552057885778457.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2882552057885778457.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/TempSuite2882552057885778457.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2882552057885778457.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite2882552057885778457.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2882552057885778457.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite2882552057885778457.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite2882552057885778457.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2882552057885778457.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2882552057885778457.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2882552057885778457.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite2882552057885778457.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2882552057885778457.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite7898620376861039604
/tmp/adamTestMvnEoU0t8M/hg19.chrM.2bit8678460834227248938.chrM.2bit
/tmp/adamTestMvnEoU0t8M/.FeatureDatasetFunctionsSuite3273017567497612558.bed.crc
/tmp/adamTestMvnEoU0t8M/1557956850581-0
/tmp/adamTestMvnEoU0t8M/1557956850581-0/test.fa
/tmp/adamTestMvnEoU0t8M/1557956850581-0/test.fa/part-00000
/tmp/adamTestMvnEoU0t8M/1557956850581-0/test.fa/_SUCCESS
/tmp/adamTestMvnEoU0t8M/1557956850581-0/test.fa/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/1557956850581-0/test.fa/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1994753721083758275.adam
/tmp/adamTestMvnEoU0t8M/TempSuite1994753721083758275.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1994753721083758275.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite1994753721083758275.adam/._samples.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1994753721083758275.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1994753721083758275.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1994753721083758275.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite1994753721083758275.adam/_samples.avro
/tmp/adamTestMvnEoU0t8M/TempSuite1994753721083758275.adam/_header
/tmp/adamTestMvnEoU0t8M/TempSuite1994753721083758275.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite1994753721083758275.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1994753721083758275.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1994753721083758275.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite1994753721083758275.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1994753721083758275.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite2216274508680158113.adam
/tmp/adamTestMvnEoU0t8M/TempSuite2216274508680158113.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2216274508680158113.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/TempSuite2216274508680158113.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite2216274508680158113.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2216274508680158113.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite2216274508680158113.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/TempSuite2216274508680158113.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2216274508680158113.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite2216274508680158113.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2216274508680158113.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2216274508680158113.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2216274508680158113.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite2216274508680158113.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2216274508680158113.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/4030606110635278421
/tmp/adamTestMvnEoU0t8M/4030606110635278421/unordered.adam
/tmp/adamTestMvnEoU0t8M/4030606110635278421/unordered.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/4030606110635278421/unordered.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/4030606110635278421/unordered.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/4030606110635278421/unordered.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/4030606110635278421/unordered.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/4030606110635278421/unordered.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/4030606110635278421/unordered.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/4030606110635278421/unordered.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/4030606110635278421/unordered.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/4030606110635278421/unordered.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/4030606110635278421/unordered.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/4030606110635278421/unordered.adam/_metadata
/tmp/adamTestMvnEoU0t8M/4030606110635278421/unordered.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/4030606110635278421/unordered.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite1403554893931119484
/tmp/adamTestMvnEoU0t8M/TempSuite5677522422687584817
/tmp/adamTestMvnEoU0t8M/random.vcf6790789701071804156.vcf
/tmp/adamTestMvnEoU0t8M/TempSuite7618950960868392577.adam
/tmp/adamTestMvnEoU0t8M/TempSuite7618950960868392577.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/TempSuite7618950960868392577.adam/part-00002-1486156a-e519-411c-a4d5-25098c08e925-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite7618950960868392577.adam/.part-00002-1486156a-e519-411c-a4d5-25098c08e925-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7618950960868392577.adam/.part-00001-1486156a-e519-411c-a4d5-25098c08e925-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7618950960868392577.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/TempSuite7618950960868392577.adam/part-00001-1486156a-e519-411c-a4d5-25098c08e925-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite7618950960868392577.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7618950960868392577.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite7618950960868392577.adam/part-00000-1486156a-e519-411c-a4d5-25098c08e925-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite7618950960868392577.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7618950960868392577.adam/.part-00000-1486156a-e519-411c-a4d5-25098c08e925-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7618950960868392577.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7618950960868392577.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7618950960868392577.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6130819379138089232
/tmp/adamTestMvnEoU0t8M/TempSuite2181636601654099692reads12.sam_2
/tmp/adamTestMvnEoU0t8M/.TempSuite4866811095383964518_1.fq.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6854950890597975091.adam
/tmp/adamTestMvnEoU0t8M/TempSuite6854950890597975091.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6854950890597975091.adam/part-00001-2bba949e-a132-4148-8451-a14da1276da6-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite6854950890597975091.adam/_header
/tmp/adamTestMvnEoU0t8M/TempSuite6854950890597975091.adam/part-00000-2bba949e-a132-4148-8451-a14da1276da6-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite6854950890597975091.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite6854950890597975091.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6854950890597975091.adam/.part-00000-2bba949e-a132-4148-8451-a14da1276da6-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6854950890597975091.adam/.part-00002-2bba949e-a132-4148-8451-a14da1276da6-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6854950890597975091.adam/part-00002-2bba949e-a132-4148-8451-a14da1276da6-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite6854950890597975091.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6854950890597975091.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite6854950890597975091.adam/.part-00001-2bba949e-a132-4148-8451-a14da1276da6-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8342025497110158737.adam
/tmp/adamTestMvnEoU0t8M/TempSuite8342025497110158737.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/TempSuite8342025497110158737.adam/.part-00000-f728d314-b0e7-4ed5-a5d6-463072d5f66a-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8342025497110158737.adam/part-00000-f728d314-b0e7-4ed5-a5d6-463072d5f66a-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite8342025497110158737.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/TempSuite8342025497110158737.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8342025497110158737.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite8342025497110158737.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8342025497110158737.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8342025497110158737.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8342025497110158737.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite3408005002987345930
/tmp/adamTestMvnEoU0t8M/TempSuite8405459197021936755
/tmp/adamTestMvnEoU0t8M/3240220006460803648
/tmp/adamTestMvnEoU0t8M/3240220006460803648/ctg.adam
/tmp/adamTestMvnEoU0t8M/3240220006460803648/ctg.adam/._partitionedByStartPos.crc
/tmp/adamTestMvnEoU0t8M/3240220006460803648/ctg.adam/_partitionedByStartPos
/tmp/adamTestMvnEoU0t8M/3240220006460803648/ctg.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/3240220006460803648/ctg.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/3240220006460803648/ctg.adam/referenceName=HLA-DQB1%2A05%3A01%3A01%3A02
/tmp/adamTestMvnEoU0t8M/3240220006460803648/ctg.adam/referenceName=HLA-DQB1%2A05%3A01%3A01%3A02/positionBin=0
/tmp/adamTestMvnEoU0t8M/3240220006460803648/ctg.adam/referenceName=HLA-DQB1%2A05%3A01%3A01%3A02/positionBin=0/part-00000-e642995f-53a8-49a7-b5c5-ce49054d6e83.c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/3240220006460803648/ctg.adam/referenceName=HLA-DQB1%2A05%3A01%3A01%3A02/positionBin=0/.part-00000-e642995f-53a8-49a7-b5c5-ce49054d6e83.c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/3240220006460803648/ctg.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/3240220006460803648/ctg.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite5828307598403342018.adam
/tmp/adamTestMvnEoU0t8M/TempSuite5828307598403342018.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5828307598403342018.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite5828307598403342018.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5828307598403342018.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5828307598403342018.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite5828307598403342018.adam/_header
/tmp/adamTestMvnEoU0t8M/TempSuite5828307598403342018.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite5828307598403342018.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5828307598403342018.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5828307598403342018.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite5828307598403342018.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5828307598403342018.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite8821625528556412479.adam
/tmp/adamTestMvnEoU0t8M/TempSuite8821625528556412479.adam/.part-00000-a02ddabd-442e-4cc5-9d45-0715e7830bdf-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8821625528556412479.adam/.part-00002-a02ddabd-442e-4cc5-9d45-0715e7830bdf-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8821625528556412479.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8821625528556412479.adam/part-00000-a02ddabd-442e-4cc5-9d45-0715e7830bdf-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite8821625528556412479.adam/_header
/tmp/adamTestMvnEoU0t8M/TempSuite8821625528556412479.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite8821625528556412479.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8821625528556412479.adam/.part-00001-a02ddabd-442e-4cc5-9d45-0715e7830bdf-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8821625528556412479.adam/part-00002-a02ddabd-442e-4cc5-9d45-0715e7830bdf-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite8821625528556412479.adam/part-00001-a02ddabd-442e-4cc5-9d45-0715e7830bdf-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite8821625528556412479.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8821625528556412479.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite5088377317552044354.bed
/tmp/adamTestMvnEoU0t8M/TempSuite5088377317552044354.bed/part-00000
/tmp/adamTestMvnEoU0t8M/TempSuite5088377317552044354.bed/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite5088377317552044354.bed/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5088377317552044354.bed/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/2010903464590846019
/tmp/adamTestMvnEoU0t8M/2010903464590846019/.ordered.sam.crc
/tmp/adamTestMvnEoU0t8M/2010903464590846019/ordered.sam
/tmp/adamTestMvnEoU0t8M/TempSuite5824723340182901615
/tmp/adamTestMvnEoU0t8M/TempSuite6090014915879511508.bed
/tmp/adamTestMvnEoU0t8M/TempSuite6090014915879511508.bed/part-00000
/tmp/adamTestMvnEoU0t8M/TempSuite6090014915879511508.bed/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite6090014915879511508.bed/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6090014915879511508.bed/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/random.vcf5017961679419432408.vcf
/tmp/adamTestMvnEoU0t8M/TempSuite4796532187344875801
/tmp/adamTestMvnEoU0t8M/TempSuite6202175483481684916.bed
/tmp/adamTestMvnEoU0t8M/TempSuite6202175483481684916.bed/part-00000
/tmp/adamTestMvnEoU0t8M/TempSuite6202175483481684916.bed/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite6202175483481684916.bed/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6202175483481684916.bed/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/605810597469201654
/tmp/adamTestMvnEoU0t8M/605810597469201654/.unordered.sam.crc
/tmp/adamTestMvnEoU0t8M/605810597469201654/unordered.sam
/tmp/adamTestMvnEoU0t8M/TempSuite2711212292622014368.bed
/tmp/adamTestMvnEoU0t8M/TempSuite2711212292622014368.bed/part-00000
/tmp/adamTestMvnEoU0t8M/TempSuite2711212292622014368.bed/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite2711212292622014368.bed/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2711212292622014368.bed/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/sorted-variants.lex.vcf4256916535005861324.lex.vcf
/tmp/adamTestMvnEoU0t8M/TempSuite1709815238772478631.fa
/tmp/adamTestMvnEoU0t8M/TempSuite1709815238772478631.fa/part-00000
/tmp/adamTestMvnEoU0t8M/TempSuite1709815238772478631.fa/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite1709815238772478631.fa/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1709815238772478631.fa/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1606939849983055769
/tmp/adamTestMvnEoU0t8M/TempSuite6248372496447833179
/tmp/adamTestMvnEoU0t8M/TempSuite4740515375928370276.adam
/tmp/adamTestMvnEoU0t8M/TempSuite4740515375928370276.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4740515375928370276.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/TempSuite4740515375928370276.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite4740515375928370276.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite4740515375928370276.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4740515375928370276.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4740515375928370276.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite4740515375928370276.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4740515375928370276.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/TempSuite4740515375928370276.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4740515375928370276.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite4740515375928370276.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4740515375928370276.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite4740515375928370276.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite4740515375928370276.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4740515375928370276.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4740515375928370276.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4740515375928370276.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite4740515375928370276.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4740515375928370276.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite3536622298833980921
/tmp/adamTestMvnEoU0t8M/TempSuite5618860529695125099
/tmp/adamTestMvnEoU0t8M/TempSuite522753161650294181.adam
/tmp/adamTestMvnEoU0t8M/TempSuite522753161650294181.adam/part-00002-d110579d-198e-4139-a8e0-7a376f8e8ac3-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite522753161650294181.adam/.part-00002-d110579d-198e-4139-a8e0-7a376f8e8ac3-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite522753161650294181.adam/part-00000-d110579d-198e-4139-a8e0-7a376f8e8ac3-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite522753161650294181.adam/part-00001-d110579d-198e-4139-a8e0-7a376f8e8ac3-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite522753161650294181.adam/.part-00001-d110579d-198e-4139-a8e0-7a376f8e8ac3-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite522753161650294181.adam/.part-00000-d110579d-198e-4139-a8e0-7a376f8e8ac3-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite522753161650294181.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite522753161650294181.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite522753161650294181.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite522753161650294181.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite1884333577927104533
/tmp/adamTestMvnEoU0t8M/TempSuite4833271400274985209.sam
/tmp/adamTestMvnEoU0t8M/TempSuite6812686492287890595.adam
/tmp/adamTestMvnEoU0t8M/TempSuite6812686492287890595.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6812686492287890595.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/TempSuite6812686492287890595.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite6812686492287890595.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6812686492287890595.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite6812686492287890595.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/TempSuite6812686492287890595.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6812686492287890595.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite6812686492287890595.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6812686492287890595.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6812686492287890595.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6812686492287890595.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite6812686492287890595.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6812686492287890595.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/2968160202333200771
/tmp/adamTestMvnEoU0t8M/2968160202333200771/readname_sorted.sam
/tmp/adamTestMvnEoU0t8M/2968160202333200771/.readname_sorted.sam.crc
/tmp/adamTestMvnEoU0t8M/1070660130825125153
/tmp/adamTestMvnEoU0t8M/1070660130825125153/unordered.adam
/tmp/adamTestMvnEoU0t8M/1070660130825125153/unordered.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/1070660130825125153/unordered.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/1070660130825125153/unordered.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/1070660130825125153/unordered.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/1070660130825125153/unordered.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/1070660130825125153/unordered.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/1070660130825125153/unordered.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/1070660130825125153/unordered.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/1070660130825125153/unordered.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/1070660130825125153/unordered.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/1070660130825125153/unordered.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/1070660130825125153/unordered.adam/_metadata
/tmp/adamTestMvnEoU0t8M/1070660130825125153/unordered.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/1070660130825125153/unordered.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite3665638713354833399
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6442097469203618543.narrowPeak
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6442097469203618543.narrowPeak/part-00002
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6442097469203618543.narrowPeak/.part-00003.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6442097469203618543.narrowPeak/part-00000
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6442097469203618543.narrowPeak/part-00003
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6442097469203618543.narrowPeak/.part-00002.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6442097469203618543.narrowPeak/_SUCCESS
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6442097469203618543.narrowPeak/part-00001
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6442097469203618543.narrowPeak/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6442097469203618543.narrowPeak/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6442097469203618543.narrowPeak/.part-00001.crc
/tmp/adamTestMvnEoU0t8M/javaAC7401373921344446519
/tmp/adamTestMvnEoU0t8M/javaAC7401373921344446519/testRdd.genotype.adam
/tmp/adamTestMvnEoU0t8M/javaAC7401373921344446519/testRdd.genotype.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/javaAC7401373921344446519/testRdd.genotype.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/javaAC7401373921344446519/testRdd.genotype.adam/._samples.avro.crc
/tmp/adamTestMvnEoU0t8M/javaAC7401373921344446519/testRdd.genotype.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/javaAC7401373921344446519/testRdd.genotype.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/javaAC7401373921344446519/testRdd.genotype.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/javaAC7401373921344446519/testRdd.genotype.adam/_samples.avro
/tmp/adamTestMvnEoU0t8M/javaAC7401373921344446519/testRdd.genotype.adam/_header
/tmp/adamTestMvnEoU0t8M/javaAC7401373921344446519/testRdd.genotype.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/javaAC7401373921344446519/testRdd.genotype.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/javaAC7401373921344446519/testRdd.genotype.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/javaAC7401373921344446519/testRdd.genotype.adam/_metadata
/tmp/adamTestMvnEoU0t8M/javaAC7401373921344446519/testRdd.genotype.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/javaAC7401373921344446519/testRdd.genotype.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/16009890346577866
/tmp/adamTestMvnEoU0t8M/16009890346577866/.out.sam_head.crc
/tmp/adamTestMvnEoU0t8M/16009890346577866/out.sam_tail
/tmp/adamTestMvnEoU0t8M/16009890346577866/out.sam_tail/part-r-00002.sam
/tmp/adamTestMvnEoU0t8M/16009890346577866/out.sam_tail/.part-r-00003.sam.crc
/tmp/adamTestMvnEoU0t8M/16009890346577866/out.sam_tail/part-r-00000.sam
/tmp/adamTestMvnEoU0t8M/16009890346577866/out.sam_tail/part-r-00003.sam
/tmp/adamTestMvnEoU0t8M/16009890346577866/out.sam_tail/.part-r-00001.sam.crc
/tmp/adamTestMvnEoU0t8M/16009890346577866/out.sam_tail/.part-r-00002.sam.crc
/tmp/adamTestMvnEoU0t8M/16009890346577866/out.sam_tail/_SUCCESS
/tmp/adamTestMvnEoU0t8M/16009890346577866/out.sam_tail/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/16009890346577866/out.sam_tail/part-r-00001.sam
/tmp/adamTestMvnEoU0t8M/16009890346577866/out.sam_tail/.part-r-00000.sam.crc
/tmp/adamTestMvnEoU0t8M/16009890346577866/out.sam_head
/tmp/adamTestMvnEoU0t8M/16009890346577866/.out.sam.crc
/tmp/adamTestMvnEoU0t8M/16009890346577866/out.sam
/tmp/adamTestMvnEoU0t8M/TempSuite4265705078652514770
/tmp/adamTestMvnEoU0t8M/TempSuite1689501930357543052
/tmp/adamTestMvnEoU0t8M/5127746749963735295
/tmp/adamTestMvnEoU0t8M/5127746749963735295/ctg.adam
/tmp/adamTestMvnEoU0t8M/5127746749963735295/ctg.adam/._partitionedByStartPos.crc
/tmp/adamTestMvnEoU0t8M/5127746749963735295/ctg.adam/_partitionedByStartPos
/tmp/adamTestMvnEoU0t8M/5127746749963735295/ctg.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/5127746749963735295/ctg.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/5127746749963735295/ctg.adam/referenceName=HLA-DQB1%2A05%3A01%3A01%3A02
/tmp/adamTestMvnEoU0t8M/5127746749963735295/ctg.adam/referenceName=HLA-DQB1%2A05%3A01%3A01%3A02/positionBin=0
/tmp/adamTestMvnEoU0t8M/5127746749963735295/ctg.adam/referenceName=HLA-DQB1%2A05%3A01%3A01%3A02/positionBin=0/part-00000-6b1d8df0-8ab7-48a7-a060-aaaba605e7eb.c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/5127746749963735295/ctg.adam/referenceName=HLA-DQB1%2A05%3A01%3A01%3A02/positionBin=0/.part-00000-6b1d8df0-8ab7-48a7-a060-aaaba605e7eb.c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/5127746749963735295/ctg.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/5127746749963735295/ctg.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite8279120704475497595.adam
/tmp/adamTestMvnEoU0t8M/TempSuite8279120704475497595.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8279120704475497595.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/TempSuite8279120704475497595.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite8279120704475497595.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8279120704475497595.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite8279120704475497595.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/TempSuite8279120704475497595.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8279120704475497595.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite8279120704475497595.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8279120704475497595.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8279120704475497595.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8279120704475497595.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite8279120704475497595.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8279120704475497595.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/3461560727036960077
/tmp/adamTestMvnEoU0t8M/3461560727036960077/unordered.bam
/tmp/adamTestMvnEoU0t8M/3461560727036960077/.unordered.bam.crc
/tmp/adamTestMvnEoU0t8M/sorted.sam7911725264370426571.sam
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite5662919366754882718.gff3
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite5662919366754882718.gff3/part-00002
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite5662919366754882718.gff3/.part-00003.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite5662919366754882718.gff3/part-00000
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite5662919366754882718.gff3/part-00003
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite5662919366754882718.gff3/.part-00002.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite5662919366754882718.gff3/_SUCCESS
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite5662919366754882718.gff3/part-00001
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite5662919366754882718.gff3/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite5662919366754882718.gff3/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite5662919366754882718.gff3/.part-00001.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4831076815083441281
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite2117711833610041493
/tmp/adamTestMvnEoU0t8M/TempSuite1330032492679967261
/tmp/adamTestMvnEoU0t8M/TempSuite3757973436636328940
/tmp/adamTestMvnEoU0t8M/.TempSuite6563083365729064506_2.fq.crc
/tmp/adamTestMvnEoU0t8M/8193623692667538028
/tmp/adamTestMvnEoU0t8M/8193623692667538028/ctg.adam
/tmp/adamTestMvnEoU0t8M/8193623692667538028/ctg.adam/._partitionedByStartPos.crc
/tmp/adamTestMvnEoU0t8M/8193623692667538028/ctg.adam/_partitionedByStartPos
/tmp/adamTestMvnEoU0t8M/8193623692667538028/ctg.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/8193623692667538028/ctg.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/8193623692667538028/ctg.adam/referenceName=HLA-DQB1%2A05%3A01%3A01%3A02
/tmp/adamTestMvnEoU0t8M/8193623692667538028/ctg.adam/referenceName=HLA-DQB1%2A05%3A01%3A01%3A02/positionBin=0
/tmp/adamTestMvnEoU0t8M/8193623692667538028/ctg.adam/referenceName=HLA-DQB1%2A05%3A01%3A01%3A02/positionBin=0/part-00000-a2ac04f0-922d-42f9-9edf-2d878fa09a3c.c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/8193623692667538028/ctg.adam/referenceName=HLA-DQB1%2A05%3A01%3A01%3A02/positionBin=0/.part-00000-a2ac04f0-922d-42f9-9edf-2d878fa09a3c.c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/8193623692667538028/ctg.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/8193623692667538028/ctg.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/ordered.sam1094452278639456887.sam
/tmp/adamTestMvnEoU0t8M/TempSuite6419673112058934149.adam
/tmp/adamTestMvnEoU0t8M/TempSuite6419673112058934149.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6419673112058934149.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/TempSuite6419673112058934149.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite6419673112058934149.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6419673112058934149.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite6419673112058934149.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/TempSuite6419673112058934149.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6419673112058934149.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite6419673112058934149.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6419673112058934149.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6419673112058934149.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6419673112058934149.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite6419673112058934149.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6419673112058934149.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/bqsr12266069882025777219
/tmp/adamTestMvnEoU0t8M/bqsr12266069882025777219/.bqsr1.sam.crc
/tmp/adamTestMvnEoU0t8M/bqsr12266069882025777219/bqsr1.sam
/tmp/adamTestMvnEoU0t8M/TempSuite4498481262550917795.adam
/tmp/adamTestMvnEoU0t8M/TempSuite4498481262550917795.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/TempSuite4498481262550917795.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/TempSuite4498481262550917795.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4498481262550917795.adam/.part-00000-d1974780-4c20-4dba-9755-d04fb6492afd-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4498481262550917795.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite4498481262550917795.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4498481262550917795.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4498481262550917795.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4498481262550917795.adam/part-00000-d1974780-4c20-4dba-9755-d04fb6492afd-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite4498481262550917795.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/random.vcf8403388930412631223.vcf
/tmp/adamTestMvnEoU0t8M/TempSuite4659656500088687514_1.fq
/tmp/adamTestMvnEoU0t8M/TempSuite4783827813001044644
/tmp/adamTestMvnEoU0t8M/TempSuite1127008758708836432.bam
/tmp/adamTestMvnEoU0t8M/TempSuite9088731903792791788
/tmp/adamTestMvnEoU0t8M/javaAC5355596253409401222
/tmp/adamTestMvnEoU0t8M/javaAC5355596253409401222/testRdd.fragment.adam
/tmp/adamTestMvnEoU0t8M/javaAC5355596253409401222/testRdd.fragment.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/javaAC5355596253409401222/testRdd.fragment.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/javaAC5355596253409401222/testRdd.fragment.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/javaAC5355596253409401222/testRdd.fragment.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/javaAC5355596253409401222/testRdd.fragment.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/javaAC5355596253409401222/testRdd.fragment.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/javaAC5355596253409401222/testRdd.fragment.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/javaAC5355596253409401222/testRdd.fragment.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/javaAC5355596253409401222/testRdd.fragment.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/javaAC5355596253409401222/testRdd.fragment.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/javaAC5355596253409401222/testRdd.fragment.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/javaAC5355596253409401222/testRdd.fragment.adam/_metadata
/tmp/adamTestMvnEoU0t8M/javaAC5355596253409401222/testRdd.fragment.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/javaAC5355596253409401222/testRdd.fragment.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite5316434547967913019
/tmp/adamTestMvnEoU0t8M/TempSuite1031905937383720643.2.adam
/tmp/adamTestMvnEoU0t8M/TempSuite1031905937383720643.2.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1031905937383720643.2.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/TempSuite1031905937383720643.2.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite1031905937383720643.2.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1031905937383720643.2.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite1031905937383720643.2.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/TempSuite1031905937383720643.2.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1031905937383720643.2.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite1031905937383720643.2.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1031905937383720643.2.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1031905937383720643.2.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1031905937383720643.2.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite1031905937383720643.2.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1031905937383720643.2.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite8790522113936656696.fq
/tmp/adamTestMvnEoU0t8M/TempSuite1396316331192030717.adam
/tmp/adamTestMvnEoU0t8M/TempSuite1396316331192030717.adam/._partitionedByStartPos.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1396316331192030717.adam/._samples.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1396316331192030717.adam/_samples.avro
/tmp/adamTestMvnEoU0t8M/TempSuite1396316331192030717.adam/_partitionedByStartPos
/tmp/adamTestMvnEoU0t8M/TempSuite1396316331192030717.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite1396316331192030717.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1396316331192030717.adam/referenceName=1
/tmp/adamTestMvnEoU0t8M/TempSuite1396316331192030717.adam/referenceName=1/positionBin=240
/tmp/adamTestMvnEoU0t8M/TempSuite1396316331192030717.adam/referenceName=1/positionBin=240/.part-00002-94b0ce15-531c-4b0e-aac4-4b59a87de1b3.c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1396316331192030717.adam/referenceName=1/positionBin=240/part-00002-94b0ce15-531c-4b0e-aac4-4b59a87de1b3.c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite1396316331192030717.adam/referenceName=1/positionBin=14
/tmp/adamTestMvnEoU0t8M/TempSuite1396316331192030717.adam/referenceName=1/positionBin=14/part-00000-94b0ce15-531c-4b0e-aac4-4b59a87de1b3.c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite1396316331192030717.adam/referenceName=1/positionBin=14/.part-00000-94b0ce15-531c-4b0e-aac4-4b59a87de1b3.c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1396316331192030717.adam/referenceName=1/positionBin=0
/tmp/adamTestMvnEoU0t8M/TempSuite1396316331192030717.adam/referenceName=1/positionBin=0/part-00000-94b0ce15-531c-4b0e-aac4-4b59a87de1b3.c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite1396316331192030717.adam/referenceName=1/positionBin=0/.part-00000-94b0ce15-531c-4b0e-aac4-4b59a87de1b3.c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1396316331192030717.adam/referenceName=1/positionBin=169
/tmp/adamTestMvnEoU0t8M/TempSuite1396316331192030717.adam/referenceName=1/positionBin=169/part-00001-94b0ce15-531c-4b0e-aac4-4b59a87de1b3.c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite1396316331192030717.adam/referenceName=1/positionBin=169/.part-00001-94b0ce15-531c-4b0e-aac4-4b59a87de1b3.c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1396316331192030717.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1396316331192030717.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/noqual2843977875401067931
/tmp/adamTestMvnEoU0t8M/noqual2843977875401067931/noqualB.fastq
/tmp/adamTestMvnEoU0t8M/noqual2843977875401067931/noqualB.fastq/part-00000
/tmp/adamTestMvnEoU0t8M/noqual2843977875401067931/noqualB.fastq/_SUCCESS
/tmp/adamTestMvnEoU0t8M/noqual2843977875401067931/noqualB.fastq/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/noqual2843977875401067931/noqualB.fastq/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/noqual2843977875401067931/noqualA.sam
/tmp/adamTestMvnEoU0t8M/noqual2843977875401067931/noqualA.sam/part-r-00000.sam
/tmp/adamTestMvnEoU0t8M/noqual2843977875401067931/noqualA.sam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/noqual2843977875401067931/noqualA.sam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/noqual2843977875401067931/noqualA.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7007022466307716508.adam
/tmp/adamTestMvnEoU0t8M/TempSuite7007022466307716508.adam/.part-00000-de5845aa-aa52-4b3a-996d-95c5315a2fa9-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7007022466307716508.adam/part-00000-de5845aa-aa52-4b3a-996d-95c5315a2fa9-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite7007022466307716508.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7007022466307716508.adam/_header
/tmp/adamTestMvnEoU0t8M/TempSuite7007022466307716508.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite7007022466307716508.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7007022466307716508.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7007022466307716508.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/5526813423504671194
/tmp/adamTestMvnEoU0t8M/5526813423504671194/.sorted.lex.vcf.crc
/tmp/adamTestMvnEoU0t8M/5526813423504671194/sorted.lex.vcf
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3594041791745496765.narrowPeak
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3594041791745496765.narrowPeak/part-00002
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3594041791745496765.narrowPeak/.part-00003.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3594041791745496765.narrowPeak/part-00000
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3594041791745496765.narrowPeak/part-00003
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3594041791745496765.narrowPeak/.part-00002.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3594041791745496765.narrowPeak/_SUCCESS
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3594041791745496765.narrowPeak/part-00001
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3594041791745496765.narrowPeak/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3594041791745496765.narrowPeak/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3594041791745496765.narrowPeak/.part-00001.crc
/tmp/adamTestMvnEoU0t8M/2727724833355584543
/tmp/adamTestMvnEoU0t8M/2727724833355584543/ctg.adam
/tmp/adamTestMvnEoU0t8M/2727724833355584543/ctg.adam/._partitionedByStartPos.crc
/tmp/adamTestMvnEoU0t8M/2727724833355584543/ctg.adam/_partitionedByStartPos
/tmp/adamTestMvnEoU0t8M/2727724833355584543/ctg.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/2727724833355584543/ctg.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/2727724833355584543/ctg.adam/referenceName=HLA-DQB1%2A05%3A01%3A01%3A02
/tmp/adamTestMvnEoU0t8M/2727724833355584543/ctg.adam/referenceName=HLA-DQB1%2A05%3A01%3A01%3A02/positionBin=0
/tmp/adamTestMvnEoU0t8M/2727724833355584543/ctg.adam/referenceName=HLA-DQB1%2A05%3A01%3A01%3A02/positionBin=0/part-00000-4d875c1b-bf33-4434-aefe-3ca0853a366b.c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/2727724833355584543/ctg.adam/referenceName=HLA-DQB1%2A05%3A01%3A01%3A02/positionBin=0/.part-00000-4d875c1b-bf33-4434-aefe-3ca0853a366b.c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/2727724833355584543/ctg.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/2727724833355584543/ctg.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite2861681911364280510.adam
/tmp/adamTestMvnEoU0t8M/TempSuite2861681911364280510.adam/part-00003-16bb89bd-1e48-4cb0-8382-51e582e2630c-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite2861681911364280510.adam/.part-00003-16bb89bd-1e48-4cb0-8382-51e582e2630c-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2861681911364280510.adam/._samples.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2861681911364280510.adam/part-00000-16bb89bd-1e48-4cb0-8382-51e582e2630c-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite2861681911364280510.adam/_samples.avro
/tmp/adamTestMvnEoU0t8M/TempSuite2861681911364280510.adam/.part-00000-16bb89bd-1e48-4cb0-8382-51e582e2630c-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2861681911364280510.adam/.part-00005-16bb89bd-1e48-4cb0-8382-51e582e2630c-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2861681911364280510.adam/part-00005-16bb89bd-1e48-4cb0-8382-51e582e2630c-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite2861681911364280510.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite2861681911364280510.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2861681911364280510.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2861681911364280510.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite945508914842490125.gff3
/tmp/adamTestMvnEoU0t8M/6847396587747969783
/tmp/adamTestMvnEoU0t8M/6847396587747969783/small.vcf.bgz
/tmp/adamTestMvnEoU0t8M/6847396587747969783/.small.vcf.bgz.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6175396954171688975
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3679525687411650867.interval_list
/tmp/adamTestMvnEoU0t8M/TempSuite7086168389916543751.adam
/tmp/adamTestMvnEoU0t8M/TempSuite7086168389916543751.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7086168389916543751.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite7086168389916543751.adam/._samples.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7086168389916543751.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7086168389916543751.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7086168389916543751.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite7086168389916543751.adam/_samples.avro
/tmp/adamTestMvnEoU0t8M/TempSuite7086168389916543751.adam/_header
/tmp/adamTestMvnEoU0t8M/TempSuite7086168389916543751.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite7086168389916543751.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7086168389916543751.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7086168389916543751.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite7086168389916543751.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7086168389916543751.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3379588962512282242
/tmp/adamTestMvnEoU0t8M/TempSuite2541799031308679429.fq
/tmp/adamTestMvnEoU0t8M/TempSuite2541799031308679429.fq/part-00000
/tmp/adamTestMvnEoU0t8M/TempSuite2541799031308679429.fq/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite2541799031308679429.fq/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2541799031308679429.fq/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8884348626472027979.adam
/tmp/adamTestMvnEoU0t8M/TempSuite8884348626472027979.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8884348626472027979.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/TempSuite8884348626472027979.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite8884348626472027979.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8884348626472027979.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite8884348626472027979.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/TempSuite8884348626472027979.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8884348626472027979.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite8884348626472027979.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8884348626472027979.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8884348626472027979.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8884348626472027979.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite8884348626472027979.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8884348626472027979.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/.TempSuite8790522113936656696.fq.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite8043402638187892739.narrowPeak
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite8043402638187892739.narrowPeak/part-00002
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite8043402638187892739.narrowPeak/.part-00003.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite8043402638187892739.narrowPeak/part-00000
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite8043402638187892739.narrowPeak/part-00003
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite8043402638187892739.narrowPeak/.part-00002.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite8043402638187892739.narrowPeak/_SUCCESS
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite8043402638187892739.narrowPeak/part-00001
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite8043402638187892739.narrowPeak/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite8043402638187892739.narrowPeak/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite8043402638187892739.narrowPeak/.part-00001.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6202175483481684916
/tmp/adamTestMvnEoU0t8M/TempSuite6483592982700562398_1.fq
/tmp/adamTestMvnEoU0t8M/TempSuite6483592982700562398_1.fq/part-00000
/tmp/adamTestMvnEoU0t8M/TempSuite6483592982700562398_1.fq/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite6483592982700562398_1.fq/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6483592982700562398_1.fq/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5688241049704952240.bam
/tmp/adamTestMvnEoU0t8M/TempSuite5688241049704952240.bam/part-r-00000.bam
/tmp/adamTestMvnEoU0t8M/TempSuite5688241049704952240.bam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite5688241049704952240.bam/.part-r-00000.bam.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5688241049704952240.bam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6092692872439007236
/tmp/adamTestMvnEoU0t8M/TempSuite6248372496447833179.adam
/tmp/adamTestMvnEoU0t8M/TempSuite6248372496447833179.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/TempSuite6248372496447833179.adam/._partitionedByStartPos.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6248372496447833179.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/TempSuite6248372496447833179.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6248372496447833179.adam/_partitionedByStartPos
/tmp/adamTestMvnEoU0t8M/TempSuite6248372496447833179.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite6248372496447833179.adam/referenceName=2
/tmp/adamTestMvnEoU0t8M/TempSuite6248372496447833179.adam/referenceName=2/positionBin=189
/tmp/adamTestMvnEoU0t8M/TempSuite6248372496447833179.adam/referenceName=2/positionBin=189/.part-00000-eb3bfeb8-c6b3-4fe0-8f00-71c8871ddea7.c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6248372496447833179.adam/referenceName=2/positionBin=189/part-00000-eb3bfeb8-c6b3-4fe0-8f00-71c8871ddea7.c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite6248372496447833179.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6248372496447833179.adam/referenceName=1
/tmp/adamTestMvnEoU0t8M/TempSuite6248372496447833179.adam/referenceName=1/positionBin=240
/tmp/adamTestMvnEoU0t8M/TempSuite6248372496447833179.adam/referenceName=1/positionBin=240/.part-00000-eb3bfeb8-c6b3-4fe0-8f00-71c8871ddea7.c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6248372496447833179.adam/referenceName=1/positionBin=240/part-00000-eb3bfeb8-c6b3-4fe0-8f00-71c8871ddea7.c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite6248372496447833179.adam/referenceName=1/positionBin=26
/tmp/adamTestMvnEoU0t8M/TempSuite6248372496447833179.adam/referenceName=1/positionBin=26/.part-00000-eb3bfeb8-c6b3-4fe0-8f00-71c8871ddea7.c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6248372496447833179.adam/referenceName=1/positionBin=26/part-00000-eb3bfeb8-c6b3-4fe0-8f00-71c8871ddea7.c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite6248372496447833179.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6248372496447833179.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6248372496447833179.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite8092413153653920599
/tmp/adamTestMvnEoU0t8M/javaAC551279538188763765
/tmp/adamTestMvnEoU0t8M/javaAC551279538188763765/testRdd.read.adam
/tmp/adamTestMvnEoU0t8M/javaAC551279538188763765/testRdd.read.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/javaAC551279538188763765/testRdd.read.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/javaAC551279538188763765/testRdd.read.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/javaAC551279538188763765/testRdd.read.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/javaAC551279538188763765/testRdd.read.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/javaAC551279538188763765/testRdd.read.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/javaAC551279538188763765/testRdd.read.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/javaAC551279538188763765/testRdd.read.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/javaAC551279538188763765/testRdd.read.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/javaAC551279538188763765/testRdd.read.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/javaAC551279538188763765/testRdd.read.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/javaAC551279538188763765/testRdd.read.adam/_metadata
/tmp/adamTestMvnEoU0t8M/javaAC551279538188763765/testRdd.read.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/javaAC551279538188763765/testRdd.read.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/.TempSuite2290534532271351380.sam.crc
/tmp/adamTestMvnEoU0t8M/TempSuite545594944430585836.adam
/tmp/adamTestMvnEoU0t8M/TempSuite545594944430585836.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite545594944430585836.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/TempSuite545594944430585836.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite545594944430585836.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite545594944430585836.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite545594944430585836.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/TempSuite545594944430585836.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite545594944430585836.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite545594944430585836.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite545594944430585836.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite545594944430585836.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite545594944430585836.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite545594944430585836.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite545594944430585836.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite3181743542613393217
/tmp/adamTestMvnEoU0t8M/4643172340052395602
/tmp/adamTestMvnEoU0t8M/4643172340052395602/test.fa
/tmp/adamTestMvnEoU0t8M/4643172340052395602/test.fa/part-00000
/tmp/adamTestMvnEoU0t8M/4643172340052395602/test.fa/_SUCCESS
/tmp/adamTestMvnEoU0t8M/4643172340052395602/test.fa/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/4643172340052395602/test.fa/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite668773675793478516
/tmp/adamTestMvnEoU0t8M/TempSuite4248151545947757190
/tmp/adamTestMvnEoU0t8M/TempSuite5401957398013403406.adam
/tmp/adamTestMvnEoU0t8M/TempSuite5401957398013403406.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5401957398013403406.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/TempSuite5401957398013403406.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite5401957398013403406.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5401957398013403406.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite5401957398013403406.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/TempSuite5401957398013403406.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5401957398013403406.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite5401957398013403406.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5401957398013403406.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5401957398013403406.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5401957398013403406.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite5401957398013403406.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5401957398013403406.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/.FeatureDatasetFunctionsSuite283148852727481408.bed.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite2192010844395766894.gtf
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite2192010844395766894.gtf/part-00002
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite2192010844395766894.gtf/.part-00003.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite2192010844395766894.gtf/part-00000
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite2192010844395766894.gtf/part-00003
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite2192010844395766894.gtf/.part-00002.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite2192010844395766894.gtf/_SUCCESS
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite2192010844395766894.gtf/part-00001
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite2192010844395766894.gtf/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite2192010844395766894.gtf/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite2192010844395766894.gtf/.part-00001.crc
/tmp/adamTestMvnEoU0t8M/.FeatureDatasetFunctionsSuite7012867335764901822.narrowPeak.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite4117322994145236959.interval_list
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite4117322994145236959.interval_list/part-00002
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite4117322994145236959.interval_list/.part-00003.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite4117322994145236959.interval_list/part-00000
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite4117322994145236959.interval_list/part-00003
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite4117322994145236959.interval_list/.part-00002.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite4117322994145236959.interval_list/_SUCCESS
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite4117322994145236959.interval_list/part-00001
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite4117322994145236959.interval_list/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite4117322994145236959.interval_list/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite4117322994145236959.interval_list/.part-00001.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5260989173652776627.bed
/tmp/adamTestMvnEoU0t8M/TempSuite5260989173652776627.bed/part-00002
/tmp/adamTestMvnEoU0t8M/TempSuite5260989173652776627.bed/.part-00003.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5260989173652776627.bed/part-00000
/tmp/adamTestMvnEoU0t8M/TempSuite5260989173652776627.bed/part-00003
/tmp/adamTestMvnEoU0t8M/TempSuite5260989173652776627.bed/.part-00002.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5260989173652776627.bed/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite5260989173652776627.bed/part-00001
/tmp/adamTestMvnEoU0t8M/TempSuite5260989173652776627.bed/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5260989173652776627.bed/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5260989173652776627.bed/.part-00001.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1914030786538274169
/tmp/adamTestMvnEoU0t8M/TempSuite3464959098321791075.bam
/tmp/adamTestMvnEoU0t8M/TempSuite2776174843492785774
/tmp/adamTestMvnEoU0t8M/TempSuite1606939849983055769.sam
/tmp/adamTestMvnEoU0t8M/TempSuite1606939849983055769.sam/part-r-00000.sam
/tmp/adamTestMvnEoU0t8M/TempSuite1606939849983055769.sam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite1606939849983055769.sam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1606939849983055769.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7528997975886490031
/tmp/adamTestMvnEoU0t8M/1557957268950-0
/tmp/adamTestMvnEoU0t8M/1557957268950-0/test.fa
/tmp/adamTestMvnEoU0t8M/1557957268950-0/test.fa/part-00000
/tmp/adamTestMvnEoU0t8M/1557957268950-0/test.fa/_SUCCESS
/tmp/adamTestMvnEoU0t8M/1557957268950-0/test.fa/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/1557957268950-0/test.fa/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3026437660390377041.adam
/tmp/adamTestMvnEoU0t8M/TempSuite3026437660390377041.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3026437660390377041.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite3026437660390377041.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite3026437660390377041.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3026437660390377041.adam/._samples.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3026437660390377041.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3026437660390377041.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite3026437660390377041.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3026437660390377041.adam/_samples.avro
/tmp/adamTestMvnEoU0t8M/TempSuite3026437660390377041.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite3026437660390377041.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3026437660390377041.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite3026437660390377041.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite3026437660390377041.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3026437660390377041.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3026437660390377041.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite3026437660390377041.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3026437660390377041.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite4878694670944163181.bed
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite4878694670944163181.bed/part-00002
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite4878694670944163181.bed/.part-00003.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite4878694670944163181.bed/part-00000
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite4878694670944163181.bed/part-00003
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite4878694670944163181.bed/.part-00002.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite4878694670944163181.bed/_SUCCESS
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite4878694670944163181.bed/part-00001
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite4878694670944163181.bed/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite4878694670944163181.bed/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite4878694670944163181.bed/.part-00001.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite2192010844395766894
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite7496277665554148249.gtf
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite7496277665554148249.gtf/part-00002
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite7496277665554148249.gtf/.part-00003.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite7496277665554148249.gtf/part-00000
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite7496277665554148249.gtf/part-00003
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite7496277665554148249.gtf/.part-00002.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite7496277665554148249.gtf/_SUCCESS
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite7496277665554148249.gtf/part-00001
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite7496277665554148249.gtf/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite7496277665554148249.gtf/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite7496277665554148249.gtf/.part-00001.crc
/tmp/adamTestMvnEoU0t8M/sorted-variants.lex.vcf7475554771919184365.lex.vcf
/tmp/adamTestMvnEoU0t8M/TempSuite2980928690439324922
/tmp/adamTestMvnEoU0t8M/TempSuite6667767654620098642.adam
/tmp/adamTestMvnEoU0t8M/TempSuite6667767654620098642.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/TempSuite6667767654620098642.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/TempSuite6667767654620098642.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6667767654620098642.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite6667767654620098642.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6667767654620098642.adam/.part-00000-47156bf2-3f7a-417e-9907-38b4cdeaa29a-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6667767654620098642.adam/part-00000-47156bf2-3f7a-417e-9907-38b4cdeaa29a-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite6667767654620098642.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6667767654620098642.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6667767654620098642.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite4831076815083441281.adam
/tmp/adamTestMvnEoU0t8M/TempSuite4831076815083441281.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4831076815083441281.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/TempSuite4831076815083441281.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite4831076815083441281.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4831076815083441281.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite4831076815083441281.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/TempSuite4831076815083441281.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4831076815083441281.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite4831076815083441281.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4831076815083441281.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4831076815083441281.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4831076815083441281.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite4831076815083441281.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4831076815083441281.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite6537510834706740565
/tmp/adamTestMvnEoU0t8M/TempSuite6538387026613621500
/tmp/adamTestMvnEoU0t8M/ordered.sam1941677353419859668.sam
/tmp/adamTestMvnEoU0t8M/TempSuite1308563358413172557
/tmp/adamTestMvnEoU0t8M/TempSuite2541152970533745345
/tmp/adamTestMvnEoU0t8M/TempSuite1123893504290901746
/tmp/adamTestMvnEoU0t8M/TempSuite7129802972686196915.adam
/tmp/adamTestMvnEoU0t8M/TempSuite7129802972686196915.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7129802972686196915.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite7129802972686196915.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7129802972686196915.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7129802972686196915.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite7129802972686196915.adam/_header
/tmp/adamTestMvnEoU0t8M/TempSuite7129802972686196915.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite7129802972686196915.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7129802972686196915.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7129802972686196915.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite7129802972686196915.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7129802972686196915.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite3408005002987345930.adam
/tmp/adamTestMvnEoU0t8M/TempSuite3408005002987345930.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3408005002987345930.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite3408005002987345930.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3408005002987345930.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3408005002987345930.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite3408005002987345930.adam/_header
/tmp/adamTestMvnEoU0t8M/TempSuite3408005002987345930.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite3408005002987345930.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3408005002987345930.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3408005002987345930.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite3408005002987345930.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3408005002987345930.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite284125889161052798
/tmp/adamTestMvnEoU0t8M/TempSuite1812548796571574657
/tmp/adamTestMvnEoU0t8M/TempSuite6161484189122331218
/tmp/adamTestMvnEoU0t8M/TempSuite736015005369604528.adam
/tmp/adamTestMvnEoU0t8M/TempSuite736015005369604528.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite736015005369604528.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite736015005369604528.adam/._samples.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite736015005369604528.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite736015005369604528.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/TempSuite736015005369604528.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite736015005369604528.adam/_samples.avro
/tmp/adamTestMvnEoU0t8M/TempSuite736015005369604528.adam/_header
/tmp/adamTestMvnEoU0t8M/TempSuite736015005369604528.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite736015005369604528.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite736015005369604528.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite736015005369604528.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite736015005369604528.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite736015005369604528.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/small.vcf5312207257351900051.vcf
/tmp/adamTestMvnEoU0t8M/random.vcf806650833623913872.vcf
/tmp/adamTestMvnEoU0t8M/TempSuite6900122121203563772
/tmp/adamTestMvnEoU0t8M/TempSuite8478312831873353695
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite5561287105705386091
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite8142149090739570964.gtf
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite8142149090739570964.gtf/part-00002
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite8142149090739570964.gtf/.part-00003.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite8142149090739570964.gtf/part-00000
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite8142149090739570964.gtf/part-00003
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite8142149090739570964.gtf/.part-00002.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite8142149090739570964.gtf/_SUCCESS
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite8142149090739570964.gtf/part-00001
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite8142149090739570964.gtf/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite8142149090739570964.gtf/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite8142149090739570964.gtf/.part-00001.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5760635718015807221_2.fq
/tmp/adamTestMvnEoU0t8M/TempSuite5760635718015807221_2.fq/part-00000
/tmp/adamTestMvnEoU0t8M/TempSuite5760635718015807221_2.fq/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite5760635718015807221_2.fq/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5760635718015807221_2.fq/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2787369316736379595.adam
/tmp/adamTestMvnEoU0t8M/TempSuite2787369316736379595.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/TempSuite2787369316736379595.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/TempSuite2787369316736379595.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2787369316736379595.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite2787369316736379595.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2787369316736379595.adam/part-00000-a6b98935-4fa6-48b1-aaf5-02dbc8049af7-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite2787369316736379595.adam/.part-00000-a6b98935-4fa6-48b1-aaf5-02dbc8049af7-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2787369316736379595.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2787369316736379595.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2787369316736379595.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite1914030786538274169.bed
/tmp/adamTestMvnEoU0t8M/TempSuite1914030786538274169.bed/part-00000
/tmp/adamTestMvnEoU0t8M/TempSuite1914030786538274169.bed/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite1914030786538274169.bed/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1914030786538274169.bed/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1317487312107915609.sam
/tmp/adamTestMvnEoU0t8M/TempSuite1317487312107915609.sam/part-r-00000.sam
/tmp/adamTestMvnEoU0t8M/TempSuite1317487312107915609.sam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite1317487312107915609.sam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1317487312107915609.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite8142149090739570964
/tmp/adamTestMvnEoU0t8M/TempSuite1144867402814901490.adam
/tmp/adamTestMvnEoU0t8M/TempSuite1144867402814901490.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/TempSuite1144867402814901490.adam/part-00000-e2c6103f-5594-4311-8bf3-d84a1f91a6ef-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite1144867402814901490.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/TempSuite1144867402814901490.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1144867402814901490.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite1144867402814901490.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1144867402814901490.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1144867402814901490.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1144867402814901490.adam/.part-00000-e2c6103f-5594-4311-8bf3-d84a1f91a6ef-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1144867402814901490.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/1557956851395-0
/tmp/adamTestMvnEoU0t8M/1557956851395-0/test.fa
/tmp/adamTestMvnEoU0t8M/1557956851395-0/test.fa/part-00000
/tmp/adamTestMvnEoU0t8M/1557956851395-0/test.fa/_SUCCESS
/tmp/adamTestMvnEoU0t8M/1557956851395-0/test.fa/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/1557956851395-0/test.fa/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7382473901725847072
/tmp/adamTestMvnEoU0t8M/TempSuite7898620376861039604.adam
/tmp/adamTestMvnEoU0t8M/TempSuite7898620376861039604.adam/._partitionedByStartPos.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7898620376861039604.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7898620376861039604.adam/referenceName=13
/tmp/adamTestMvnEoU0t8M/TempSuite7898620376861039604.adam/referenceName=13/positionBin=0
/tmp/adamTestMvnEoU0t8M/TempSuite7898620376861039604.adam/referenceName=13/positionBin=0/.part-00000-a1f27622-e8b8-4094-8353-a85d1a2868f2.c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7898620376861039604.adam/referenceName=13/positionBin=0/part-00000-a1f27622-e8b8-4094-8353-a85d1a2868f2.c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite7898620376861039604.adam/_header
/tmp/adamTestMvnEoU0t8M/TempSuite7898620376861039604.adam/_partitionedByStartPos
/tmp/adamTestMvnEoU0t8M/TempSuite7898620376861039604.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite7898620376861039604.adam/referenceName=2
/tmp/adamTestMvnEoU0t8M/TempSuite7898620376861039604.adam/referenceName=2/positionBin=0
/tmp/adamTestMvnEoU0t8M/TempSuite7898620376861039604.adam/referenceName=2/positionBin=0/.part-00000-a1f27622-e8b8-4094-8353-a85d1a2868f2.c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7898620376861039604.adam/referenceName=2/positionBin=0/part-00000-a1f27622-e8b8-4094-8353-a85d1a2868f2.c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite7898620376861039604.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7898620376861039604.adam/referenceName=1
/tmp/adamTestMvnEoU0t8M/TempSuite7898620376861039604.adam/referenceName=1/positionBin=0
/tmp/adamTestMvnEoU0t8M/TempSuite7898620376861039604.adam/referenceName=1/positionBin=0/.part-00000-a1f27622-e8b8-4094-8353-a85d1a2868f2.c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7898620376861039604.adam/referenceName=1/positionBin=0/part-00000-a1f27622-e8b8-4094-8353-a85d1a2868f2.c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite7898620376861039604.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7898620376861039604.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite2861681911364280510
/tmp/adamTestMvnEoU0t8M/4202619597463302617
/tmp/adamTestMvnEoU0t8M/4202619597463302617/readname_sorted.sam
/tmp/adamTestMvnEoU0t8M/4202619597463302617/.readname_sorted.sam.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6092692872439007236.gff3
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6092692872439007236.gff3/part-00002
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6092692872439007236.gff3/.part-00003.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6092692872439007236.gff3/part-00000
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6092692872439007236.gff3/part-00003
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6092692872439007236.gff3/.part-00002.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6092692872439007236.gff3/_SUCCESS
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6092692872439007236.gff3/part-00001
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6092692872439007236.gff3/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6092692872439007236.gff3/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6092692872439007236.gff3/.part-00001.crc
/tmp/adamTestMvnEoU0t8M/adam-cli.TransformFeaturesSuite7676208923509800309.adam
/tmp/adamTestMvnEoU0t8M/adam-cli.TransformFeaturesSuite7676208923509800309.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/adam-cli.TransformFeaturesSuite7676208923509800309.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/adam-cli.TransformFeaturesSuite7676208923509800309.adam/._samples.avro.crc
/tmp/adamTestMvnEoU0t8M/adam-cli.TransformFeaturesSuite7676208923509800309.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/adam-cli.TransformFeaturesSuite7676208923509800309.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/adam-cli.TransformFeaturesSuite7676208923509800309.adam/_samples.avro
/tmp/adamTestMvnEoU0t8M/adam-cli.TransformFeaturesSuite7676208923509800309.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/adam-cli.TransformFeaturesSuite7676208923509800309.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/adam-cli.TransformFeaturesSuite7676208923509800309.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/adam-cli.TransformFeaturesSuite7676208923509800309.adam/_metadata
/tmp/adamTestMvnEoU0t8M/adam-cli.TransformFeaturesSuite7676208923509800309.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/adam-cli.TransformFeaturesSuite7676208923509800309.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite7761588994697104753.sam
/tmp/adamTestMvnEoU0t8M/TempSuite7761588994697104753.sam/part-r-00000.sam
/tmp/adamTestMvnEoU0t8M/TempSuite7761588994697104753.sam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite7761588994697104753.sam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7761588994697104753.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnEoU0t8M/unordered.sam6495823263335664004.sam
/tmp/adamTestMvnEoU0t8M/TempSuite5281866886925548889.adam
/tmp/adamTestMvnEoU0t8M/TempSuite5281866886925548889.adam/part-00000-14c65aff-06b0-431d-b844-0773f0c5a547-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite5281866886925548889.adam/._samples.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5281866886925548889.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5281866886925548889.adam/_samples.avro
/tmp/adamTestMvnEoU0t8M/TempSuite5281866886925548889.adam/_header
/tmp/adamTestMvnEoU0t8M/TempSuite5281866886925548889.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite5281866886925548889.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5281866886925548889.adam/.part-00000-14c65aff-06b0-431d-b844-0773f0c5a547-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5281866886925548889.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5281866886925548889.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/.TempSuite8755280941645869626.fq.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2982600334688255760
/tmp/adamTestMvnEoU0t8M/3482138704343807339
/tmp/adamTestMvnEoU0t8M/3482138704343807339/predicate.3.adam
/tmp/adamTestMvnEoU0t8M/3482138704343807339/predicate.3.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/3482138704343807339/predicate.3.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/3482138704343807339/predicate.3.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/3482138704343807339/predicate.3.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/3482138704343807339/predicate.3.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/3482138704343807339/predicate.3.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/3482138704343807339/predicate.3.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/3482138704343807339/predicate.3.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/3482138704343807339/predicate.3.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/3482138704343807339/predicate.3.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/3482138704343807339/predicate.3.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/3482138704343807339/predicate.3.adam/_metadata
/tmp/adamTestMvnEoU0t8M/3482138704343807339/predicate.3.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/3482138704343807339/predicate.3.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite7525400850549284944
/tmp/adamTestMvnEoU0t8M/TempSuite7528997975886490031.adam
/tmp/adamTestMvnEoU0t8M/TempSuite7528997975886490031.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/TempSuite7528997975886490031.adam/part-00000-87cd4e92-1c6d-4f94-bed5-26f7b0f8a9c2-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite7528997975886490031.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/TempSuite7528997975886490031.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7528997975886490031.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite7528997975886490031.adam/.part-00000-87cd4e92-1c6d-4f94-bed5-26f7b0f8a9c2-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7528997975886490031.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7528997975886490031.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7528997975886490031.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7528997975886490031.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite7547240860935160035
/tmp/adamTestMvnEoU0t8M/TempSuite6855438828807373604.adam
/tmp/adamTestMvnEoU0t8M/TempSuite6855438828807373604.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6855438828807373604.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/TempSuite6855438828807373604.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite6855438828807373604.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6855438828807373604.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite6855438828807373604.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/TempSuite6855438828807373604.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6855438828807373604.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite6855438828807373604.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6855438828807373604.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6855438828807373604.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6855438828807373604.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite6855438828807373604.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6855438828807373604.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite5729665498599968385.bed
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite5729665498599968385.bed/part-00002
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite5729665498599968385.bed/.part-00003.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite5729665498599968385.bed/part-00000
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite5729665498599968385.bed/part-00003
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite5729665498599968385.bed/.part-00002.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite5729665498599968385.bed/_SUCCESS
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite5729665498599968385.bed/part-00001
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite5729665498599968385.bed/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite5729665498599968385.bed/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite5729665498599968385.bed/.part-00001.crc
/tmp/adamTestMvnEoU0t8M/random.vcf722566836088954465.vcf
/tmp/adamTestMvnEoU0t8M/.FeatureDatasetFunctionsSuite2950829516276568852.bed.crc
/tmp/adamTestMvnEoU0t8M/3257878295451569425
/tmp/adamTestMvnEoU0t8M/3257878295451569425/ctg.adam
/tmp/adamTestMvnEoU0t8M/3257878295451569425/ctg.adam/.part-00000-b7bead50-725b-42e6-8c76-469cb00125a4-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/3257878295451569425/ctg.adam/part-00000-b7bead50-725b-42e6-8c76-469cb00125a4-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/3257878295451569425/ctg.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/3257878295451569425/ctg.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/3257878295451569425/ctg.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/3257878295451569425/ctg.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/2313374086553392958
/tmp/adamTestMvnEoU0t8M/2313374086553392958/predicate.1.adam
/tmp/adamTestMvnEoU0t8M/2313374086553392958/predicate.1.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/2313374086553392958/predicate.1.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/2313374086553392958/predicate.1.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/2313374086553392958/predicate.1.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/2313374086553392958/predicate.1.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/2313374086553392958/predicate.1.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/2313374086553392958/predicate.1.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/2313374086553392958/predicate.1.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/2313374086553392958/predicate.1.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/2313374086553392958/predicate.1.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/2313374086553392958/predicate.1.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/2313374086553392958/predicate.1.adam/_metadata
/tmp/adamTestMvnEoU0t8M/2313374086553392958/predicate.1.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/2313374086553392958/predicate.1.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite8755280941645869626
/tmp/adamTestMvnEoU0t8M/TempSuite8821625528556412479
/tmp/adamTestMvnEoU0t8M/gencode.v7.annotation.trunc10.bed4421583743419898503.v7.annotation.trunc10.bed
/tmp/adamTestMvnEoU0t8M/TempSuite405179218699086109
/tmp/adamTestMvnEoU0t8M/TempSuite3419749464008675421
/tmp/adamTestMvnEoU0t8M/TempSuite6628178332464447581.bam
/tmp/adamTestMvnEoU0t8M/TempSuite6628178332464447581.bam/part-r-00000.bam
/tmp/adamTestMvnEoU0t8M/TempSuite6628178332464447581.bam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite6628178332464447581.bam/.part-r-00000.bam.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6628178332464447581.bam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7129802972686196915
/tmp/adamTestMvnEoU0t8M/1557956852364-0
/tmp/adamTestMvnEoU0t8M/1557956852364-0/test.fa
/tmp/adamTestMvnEoU0t8M/1557956852364-0/test.fa/part-00000
/tmp/adamTestMvnEoU0t8M/1557956852364-0/test.fa/_SUCCESS
/tmp/adamTestMvnEoU0t8M/1557956852364-0/test.fa/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/1557956852364-0/test.fa/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite7012867335764901822.narrowPeak
/tmp/adamTestMvnEoU0t8M/TempSuite211269448223787130
/tmp/adamTestMvnEoU0t8M/TempSuite8647796544703020103.adam
/tmp/adamTestMvnEoU0t8M/TempSuite8647796544703020103.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8647796544703020103.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/TempSuite8647796544703020103.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite8647796544703020103.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8647796544703020103.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite8647796544703020103.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/TempSuite8647796544703020103.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8647796544703020103.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite8647796544703020103.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8647796544703020103.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8647796544703020103.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8647796544703020103.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite8647796544703020103.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8647796544703020103.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite7459321648603333946
/tmp/adamTestMvnEoU0t8M/ordered.sam8221514206720759321.sam
/tmp/adamTestMvnEoU0t8M/TempSuite8322771622539253023
/tmp/adamTestMvnEoU0t8M/TempSuite9195228991744875904.adam
/tmp/adamTestMvnEoU0t8M/TempSuite9195228991744875904.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/TempSuite9195228991744875904.adam/.part-00000-c304df59-0597-491c-a7df-dc39146474f6-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite9195228991744875904.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/TempSuite9195228991744875904.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite9195228991744875904.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite9195228991744875904.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite9195228991744875904.adam/part-00000-c304df59-0597-491c-a7df-dc39146474f6-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite9195228991744875904.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite9195228991744875904.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite9195228991744875904.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite237428715992441628
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite7658558967657784066.interval_list
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite7658558967657784066.interval_list/part-00002
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite7658558967657784066.interval_list/.part-00003.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite7658558967657784066.interval_list/part-00000
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite7658558967657784066.interval_list/part-00003
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite7658558967657784066.interval_list/.part-00002.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite7658558967657784066.interval_list/_SUCCESS
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite7658558967657784066.interval_list/part-00001
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite7658558967657784066.interval_list/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite7658558967657784066.interval_list/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite7658558967657784066.interval_list/.part-00001.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2494629951774910197
/tmp/adamTestMvnEoU0t8M/TempSuite4647215045351228089
/tmp/adamTestMvnEoU0t8M/TempSuite7661956967103918261
/tmp/adamTestMvnEoU0t8M/TempSuite1330032492679967261.adam
/tmp/adamTestMvnEoU0t8M/TempSuite1330032492679967261.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite1330032492679967261.adam/part-00000-ee598c83-2611-415e-8f3e-9da3a818c6d0-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite1330032492679967261.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1330032492679967261.adam/.part-00000-ee598c83-2611-415e-8f3e-9da3a818c6d0-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1330032492679967261.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1330032492679967261.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite5180075571609828842.adam
/tmp/adamTestMvnEoU0t8M/TempSuite5180075571609828842.adam/._partitionedByStartPos.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5180075571609828842.adam/._samples.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5180075571609828842.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5180075571609828842.adam/referenceName=13
/tmp/adamTestMvnEoU0t8M/TempSuite5180075571609828842.adam/referenceName=13/positionBin=0
/tmp/adamTestMvnEoU0t8M/TempSuite5180075571609828842.adam/referenceName=13/positionBin=0/part-00000-1e1ebe01-5382-48cb-ab25-184e22f24939.c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite5180075571609828842.adam/referenceName=13/positionBin=0/.part-00000-1e1ebe01-5382-48cb-ab25-184e22f24939.c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5180075571609828842.adam/_samples.avro
/tmp/adamTestMvnEoU0t8M/TempSuite5180075571609828842.adam/_header
/tmp/adamTestMvnEoU0t8M/TempSuite5180075571609828842.adam/_partitionedByStartPos
/tmp/adamTestMvnEoU0t8M/TempSuite5180075571609828842.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite5180075571609828842.adam/referenceName=2
/tmp/adamTestMvnEoU0t8M/TempSuite5180075571609828842.adam/referenceName=2/positionBin=0
/tmp/adamTestMvnEoU0t8M/TempSuite5180075571609828842.adam/referenceName=2/positionBin=0/part-00000-1e1ebe01-5382-48cb-ab25-184e22f24939.c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite5180075571609828842.adam/referenceName=2/positionBin=0/.part-00000-1e1ebe01-5382-48cb-ab25-184e22f24939.c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5180075571609828842.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5180075571609828842.adam/referenceName=1
/tmp/adamTestMvnEoU0t8M/TempSuite5180075571609828842.adam/referenceName=1/positionBin=0
/tmp/adamTestMvnEoU0t8M/TempSuite5180075571609828842.adam/referenceName=1/positionBin=0/part-00000-1e1ebe01-5382-48cb-ab25-184e22f24939.c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite5180075571609828842.adam/referenceName=1/positionBin=0/.part-00000-1e1ebe01-5382-48cb-ab25-184e22f24939.c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5180075571609828842.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5180075571609828842.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite8380621292181923428_2.fq
/tmp/adamTestMvnEoU0t8M/TempSuite8380621292181923428_2.fq/part-00000
/tmp/adamTestMvnEoU0t8M/TempSuite8380621292181923428_2.fq/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite8380621292181923428_2.fq/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8380621292181923428_2.fq/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite9021830102239102101
/tmp/adamTestMvnEoU0t8M/TempSuite4882015427506645560
/tmp/adamTestMvnEoU0t8M/TempSuite237428715992441628.adam
/tmp/adamTestMvnEoU0t8M/TempSuite237428715992441628.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite237428715992441628.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite237428715992441628.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite237428715992441628.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite237428715992441628.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite237428715992441628.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite237428715992441628.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite237428715992441628.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite237428715992441628.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite237428715992441628.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite237428715992441628.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite237428715992441628.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite237428715992441628.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite237428715992441628.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite237428715992441628.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite237428715992441628.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/5404073651583906058
/tmp/adamTestMvnEoU0t8M/5404073651583906058/bqsr1.vcf.bgz
/tmp/adamTestMvnEoU0t8M/5404073651583906058/bqsr1.vcf.bgz/part-r-00000.bgz
/tmp/adamTestMvnEoU0t8M/5404073651583906058/bqsr1.vcf.bgz/.part-r-00003.bgz.crc
/tmp/adamTestMvnEoU0t8M/5404073651583906058/bqsr1.vcf.bgz/part-r-00002.bgz
/tmp/adamTestMvnEoU0t8M/5404073651583906058/bqsr1.vcf.bgz/part-r-00001.bgz
/tmp/adamTestMvnEoU0t8M/5404073651583906058/bqsr1.vcf.bgz/.part-r-00000.bgz.crc
/tmp/adamTestMvnEoU0t8M/5404073651583906058/bqsr1.vcf.bgz/.part-r-00002.bgz.crc
/tmp/adamTestMvnEoU0t8M/5404073651583906058/bqsr1.vcf.bgz/_SUCCESS
/tmp/adamTestMvnEoU0t8M/5404073651583906058/bqsr1.vcf.bgz/part-r-00003.bgz
/tmp/adamTestMvnEoU0t8M/5404073651583906058/bqsr1.vcf.bgz/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/5404073651583906058/bqsr1.vcf.bgz/.part-r-00001.bgz.crc
/tmp/adamTestMvnEoU0t8M/.TempSuite8055070180012296390.sam.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6537510834706740565.bam
/tmp/adamTestMvnEoU0t8M/TempSuite6537510834706740565.bam/part-r-00000.bam
/tmp/adamTestMvnEoU0t8M/TempSuite6537510834706740565.bam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite6537510834706740565.bam/.part-r-00000.bam.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6537510834706740565.bam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3181743542613393217.adam
/tmp/adamTestMvnEoU0t8M/TempSuite3181743542613393217.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3181743542613393217.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite3181743542613393217.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3181743542613393217.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3181743542613393217.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite3181743542613393217.adam/_header
/tmp/adamTestMvnEoU0t8M/TempSuite3181743542613393217.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite3181743542613393217.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3181743542613393217.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3181743542613393217.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite3181743542613393217.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3181743542613393217.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/1557956630037-0
/tmp/adamTestMvnEoU0t8M/1557956630037-0/.test.gvcf.vcf.crc
/tmp/adamTestMvnEoU0t8M/1557956630037-0/test.gvcf.vcf
/tmp/adamTestMvnEoU0t8M/TempSuite4716573701655961365.adam
/tmp/adamTestMvnEoU0t8M/TempSuite4716573701655961365.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4716573701655961365.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite4716573701655961365.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4716573701655961365.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4716573701655961365.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite4716573701655961365.adam/_header
/tmp/adamTestMvnEoU0t8M/TempSuite4716573701655961365.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite4716573701655961365.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4716573701655961365.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4716573701655961365.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite4716573701655961365.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4716573701655961365.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/7849482531080848726
/tmp/adamTestMvnEoU0t8M/7849482531080848726/sorted.vcf
/tmp/adamTestMvnEoU0t8M/7849482531080848726/.sorted.vcf.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2968943036492499064
/tmp/adamTestMvnEoU0t8M/TempSuite620968336238196214
/tmp/adamTestMvnEoU0t8M/TempSuite5622421079124184762
/tmp/adamTestMvnEoU0t8M/TempSuite405179218699086109.adam
/tmp/adamTestMvnEoU0t8M/TempSuite405179218699086109.adam/.part-00000-e0e08ccf-673a-45b7-ae8c-a57671b60a14-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite405179218699086109.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/TempSuite405179218699086109.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/TempSuite405179218699086109.adam/part-00000-e0e08ccf-673a-45b7-ae8c-a57671b60a14-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite405179218699086109.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite405179218699086109.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite405179218699086109.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite405179218699086109.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite405179218699086109.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite405179218699086109.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite1334877051702534561.interval_list
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite1334877051702534561.interval_list/part-00002
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite1334877051702534561.interval_list/.part-00003.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite1334877051702534561.interval_list/part-00000
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite1334877051702534561.interval_list/part-00003
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite1334877051702534561.interval_list/.part-00002.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite1334877051702534561.interval_list/_SUCCESS
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite1334877051702534561.interval_list/part-00001
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite1334877051702534561.interval_list/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite1334877051702534561.interval_list/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite1334877051702534561.interval_list/.part-00001.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2471952556133502807.fq
/tmp/adamTestMvnEoU0t8M/TempSuite2471952556133502807.fq/part-00000
/tmp/adamTestMvnEoU0t8M/TempSuite2471952556133502807.fq/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite2471952556133502807.fq/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2471952556133502807.fq/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5691251268856841169.adam
/tmp/adamTestMvnEoU0t8M/TempSuite5691251268856841169.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5691251268856841169.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/TempSuite5691251268856841169.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite5691251268856841169.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5691251268856841169.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite5691251268856841169.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/TempSuite5691251268856841169.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5691251268856841169.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite5691251268856841169.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5691251268856841169.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5691251268856841169.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5691251268856841169.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite5691251268856841169.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5691251268856841169.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/1557956630054-0
/tmp/adamTestMvnEoU0t8M/1557956630054-0/test_single.vcf
/tmp/adamTestMvnEoU0t8M/1557956630054-0/test.vcf
/tmp/adamTestMvnEoU0t8M/1557956630054-0/test.vcf/part-r-00000
/tmp/adamTestMvnEoU0t8M/1557956630054-0/test.vcf/_SUCCESS
/tmp/adamTestMvnEoU0t8M/1557956630054-0/test.vcf/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/1557956630054-0/test.vcf/.part-r-00000.crc
/tmp/adamTestMvnEoU0t8M/1557956630054-0/.test_single.vcf.crc
/tmp/adamTestMvnEoU0t8M/.FeatureDatasetFunctionsSuite6488204999934567222.narrowPeak.crc
/tmp/adamTestMvnEoU0t8M/1522445676975376111
/tmp/adamTestMvnEoU0t8M/1522445676975376111/contigs.adam
/tmp/adamTestMvnEoU0t8M/1522445676975376111/contigs.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/1522445676975376111/contigs.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/1522445676975376111/contigs.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/1522445676975376111/contigs.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/1522445676975376111/contigs.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/1522445676975376111/contigs.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/1522445676975376111/contigs.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/1522445676975376111/contigs.adam/_metadata
/tmp/adamTestMvnEoU0t8M/1522445676975376111/contigs.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/1522445676975376111/contigs.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite1840658206174257594
/tmp/adamTestMvnEoU0t8M/8774099906035301420
/tmp/adamTestMvnEoU0t8M/8774099906035301420/predicate.2.adam
/tmp/adamTestMvnEoU0t8M/8774099906035301420/predicate.2.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/8774099906035301420/predicate.2.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/8774099906035301420/predicate.2.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/8774099906035301420/predicate.2.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/8774099906035301420/predicate.2.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/8774099906035301420/predicate.2.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/8774099906035301420/predicate.2.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/8774099906035301420/predicate.2.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/8774099906035301420/predicate.2.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/8774099906035301420/predicate.2.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/8774099906035301420/predicate.2.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/8774099906035301420/predicate.2.adam/_metadata
/tmp/adamTestMvnEoU0t8M/8774099906035301420/predicate.2.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/8774099906035301420/predicate.2.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6505817405016198177
/tmp/adamTestMvnEoU0t8M/TempSuite1649424704772709990.bed
/tmp/adamTestMvnEoU0t8M/TempSuite1649424704772709990.bed/part-00002
/tmp/adamTestMvnEoU0t8M/TempSuite1649424704772709990.bed/.part-00003.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1649424704772709990.bed/part-00000
/tmp/adamTestMvnEoU0t8M/TempSuite1649424704772709990.bed/part-00003
/tmp/adamTestMvnEoU0t8M/TempSuite1649424704772709990.bed/.part-00002.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1649424704772709990.bed/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite1649424704772709990.bed/part-00001
/tmp/adamTestMvnEoU0t8M/TempSuite1649424704772709990.bed/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1649424704772709990.bed/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1649424704772709990.bed/.part-00001.crc
/tmp/adamTestMvnEoU0t8M/TempSuite817242398175961378
/tmp/adamTestMvnEoU0t8M/random.vcf6664347632337766612.vcf
/tmp/adamTestMvnEoU0t8M/TempSuite3480706448844337619
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite5821320934267741781.interval_list
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite5821320934267741781.interval_list/part-00002
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite5821320934267741781.interval_list/.part-00003.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite5821320934267741781.interval_list/part-00000
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite5821320934267741781.interval_list/part-00003
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite5821320934267741781.interval_list/.part-00002.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite5821320934267741781.interval_list/_SUCCESS
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite5821320934267741781.interval_list/part-00001
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite5821320934267741781.interval_list/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite5821320934267741781.interval_list/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite5821320934267741781.interval_list/.part-00001.crc
/tmp/adamTestMvnEoU0t8M/2734568746251457341
/tmp/adamTestMvnEoU0t8M/2734568746251457341/.sorted.lex.vcf.crc
/tmp/adamTestMvnEoU0t8M/2734568746251457341/sorted.lex.vcf
/tmp/adamTestMvnEoU0t8M/TempSuite7459321648603333946.adam
/tmp/adamTestMvnEoU0t8M/TempSuite7459321648603333946.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7459321648603333946.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite7459321648603333946.adam/._samples.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7459321648603333946.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7459321648603333946.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7459321648603333946.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite7459321648603333946.adam/_samples.avro
/tmp/adamTestMvnEoU0t8M/TempSuite7459321648603333946.adam/_header
/tmp/adamTestMvnEoU0t8M/TempSuite7459321648603333946.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite7459321648603333946.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7459321648603333946.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7459321648603333946.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite7459321648603333946.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7459321648603333946.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite2961033051713715829.bed
/tmp/adamTestMvnEoU0t8M/TempSuite2961033051713715829.bed/part-00000
/tmp/adamTestMvnEoU0t8M/TempSuite2961033051713715829.bed/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite2961033051713715829.bed/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2961033051713715829.bed/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/1048917640945990487
/tmp/adamTestMvnEoU0t8M/1048917640945990487/test.fa
/tmp/adamTestMvnEoU0t8M/1048917640945990487/.test.fa.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2456641050858305435
/tmp/adamTestMvnEoU0t8M/1557956850981-0
/tmp/adamTestMvnEoU0t8M/1557956850981-0/test.fa
/tmp/adamTestMvnEoU0t8M/1557956850981-0/test.fa/part-00000
/tmp/adamTestMvnEoU0t8M/1557956850981-0/test.fa/_SUCCESS
/tmp/adamTestMvnEoU0t8M/1557956850981-0/test.fa/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/1557956850981-0/test.fa/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5088377317552044354
/tmp/adamTestMvnEoU0t8M/TempSuite5394916199145313878.adam
/tmp/adamTestMvnEoU0t8M/TempSuite5394916199145313878.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5394916199145313878.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite5394916199145313878.adam/._samples.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5394916199145313878.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5394916199145313878.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite5394916199145313878.adam/_samples.avro
/tmp/adamTestMvnEoU0t8M/TempSuite5394916199145313878.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite5394916199145313878.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5394916199145313878.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5394916199145313878.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite5394916199145313878.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5394916199145313878.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite4814162300788275764.adam
/tmp/adamTestMvnEoU0t8M/TempSuite4814162300788275764.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4814162300788275764.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite4814162300788275764.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4814162300788275764.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite4814162300788275764.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite4814162300788275764.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4814162300788275764.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4814162300788275764.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite4814162300788275764.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4814162300788275764.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite2072463460740647356
/tmp/adamTestMvnEoU0t8M/TempSuite4659656500088687514
/tmp/adamTestMvnEoU0t8M/unordered.sam1581047643613475577.sam
/tmp/adamTestMvnEoU0t8M/small.sam227547998567583913.sam
/tmp/adamTestMvnEoU0t8M/TempSuite5760635718015807221
/tmp/adamTestMvnEoU0t8M/TempSuite7980798615728984614.adam
/tmp/adamTestMvnEoU0t8M/TempSuite7980798615728984614.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7980798615728984614.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/TempSuite7980798615728984614.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite7980798615728984614.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7980798615728984614.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite7980798615728984614.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/TempSuite7980798615728984614.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7980798615728984614.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite7980798615728984614.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7980798615728984614.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7980798615728984614.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7980798615728984614.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite7980798615728984614.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7980798615728984614.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/random.vcf8992756024884180055.vcf
/tmp/adamTestMvnEoU0t8M/.TempSuite2541152970533745345.sam.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3273017567497612558
/tmp/adamTestMvnEoU0t8M/javaAC6577859434041433705
/tmp/adamTestMvnEoU0t8M/javaAC6577859434041433705/testRdd.variant.adam
/tmp/adamTestMvnEoU0t8M/javaAC6577859434041433705/testRdd.variant.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/javaAC6577859434041433705/testRdd.variant.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/javaAC6577859434041433705/testRdd.variant.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/javaAC6577859434041433705/testRdd.variant.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/javaAC6577859434041433705/testRdd.variant.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/javaAC6577859434041433705/testRdd.variant.adam/_header
/tmp/adamTestMvnEoU0t8M/javaAC6577859434041433705/testRdd.variant.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/javaAC6577859434041433705/testRdd.variant.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/javaAC6577859434041433705/testRdd.variant.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/javaAC6577859434041433705/testRdd.variant.adam/_metadata
/tmp/adamTestMvnEoU0t8M/javaAC6577859434041433705/testRdd.variant.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/javaAC6577859434041433705/testRdd.variant.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite2045330511677925354.bed
/tmp/adamTestMvnEoU0t8M/TempSuite2045330511677925354.bed/part-00000
/tmp/adamTestMvnEoU0t8M/TempSuite2045330511677925354.bed/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite2045330511677925354.bed/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2045330511677925354.bed/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite211269448223787130.adam
/tmp/adamTestMvnEoU0t8M/TempSuite211269448223787130.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite211269448223787130.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite211269448223787130.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite211269448223787130.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/TempSuite211269448223787130.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite211269448223787130.adam/_header
/tmp/adamTestMvnEoU0t8M/TempSuite211269448223787130.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite211269448223787130.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite211269448223787130.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite211269448223787130.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite211269448223787130.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite211269448223787130.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite8322771622539253023.adam
/tmp/adamTestMvnEoU0t8M/TempSuite8322771622539253023.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8322771622539253023.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/TempSuite8322771622539253023.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite8322771622539253023.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite8322771622539253023.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8322771622539253023.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8322771622539253023.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite8322771622539253023.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8322771622539253023.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/TempSuite8322771622539253023.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8322771622539253023.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite8322771622539253023.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8322771622539253023.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite8322771622539253023.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite8322771622539253023.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8322771622539253023.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8322771622539253023.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8322771622539253023.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite8322771622539253023.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8322771622539253023.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite2561171077573442859.adam
/tmp/adamTestMvnEoU0t8M/TempSuite2561171077573442859.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2561171077573442859.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite2561171077573442859.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite2561171077573442859.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2561171077573442859.adam/._samples.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2561171077573442859.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2561171077573442859.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite2561171077573442859.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2561171077573442859.adam/_samples.avro
/tmp/adamTestMvnEoU0t8M/TempSuite2561171077573442859.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite2561171077573442859.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2561171077573442859.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite2561171077573442859.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite2561171077573442859.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2561171077573442859.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2561171077573442859.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite2561171077573442859.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2561171077573442859.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite8790522113936656696
/tmp/adamTestMvnEoU0t8M/8671272533720629200
/tmp/adamTestMvnEoU0t8M/8671272533720629200/genotypes.adam
/tmp/adamTestMvnEoU0t8M/8671272533720629200/genotypes.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/8671272533720629200/genotypes.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/8671272533720629200/genotypes.adam/._samples.avro.crc
/tmp/adamTestMvnEoU0t8M/8671272533720629200/genotypes.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/8671272533720629200/genotypes.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/8671272533720629200/genotypes.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/8671272533720629200/genotypes.adam/_samples.avro
/tmp/adamTestMvnEoU0t8M/8671272533720629200/genotypes.adam/_header
/tmp/adamTestMvnEoU0t8M/8671272533720629200/genotypes.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/8671272533720629200/genotypes.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/8671272533720629200/genotypes.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/8671272533720629200/genotypes.adam/_metadata
/tmp/adamTestMvnEoU0t8M/8671272533720629200/genotypes.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/8671272533720629200/genotypes.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/99124539049096245
/tmp/adamTestMvnEoU0t8M/99124539049096245/predicate.2.adam
/tmp/adamTestMvnEoU0t8M/99124539049096245/predicate.2.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/99124539049096245/predicate.2.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/99124539049096245/predicate.2.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/99124539049096245/predicate.2.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/99124539049096245/predicate.2.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/99124539049096245/predicate.2.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/99124539049096245/predicate.2.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/99124539049096245/predicate.2.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/99124539049096245/predicate.2.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/99124539049096245/predicate.2.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/99124539049096245/predicate.2.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/99124539049096245/predicate.2.adam/_metadata
/tmp/adamTestMvnEoU0t8M/99124539049096245/predicate.2.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/99124539049096245/predicate.2.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite8402006164067268105.adam
/tmp/adamTestMvnEoU0t8M/TempSuite8402006164067268105.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8402006164067268105.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite8402006164067268105.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite8402006164067268105.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8402006164067268105.adam/.part-r-00004.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8402006164067268105.adam/._samples.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8402006164067268105.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8402006164067268105.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite8402006164067268105.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8402006164067268105.adam/part-r-00004.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite8402006164067268105.adam/_samples.avro
/tmp/adamTestMvnEoU0t8M/TempSuite8402006164067268105.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite8402006164067268105.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8402006164067268105.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite8402006164067268105.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite8402006164067268105.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8402006164067268105.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8402006164067268105.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite8402006164067268105.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8402006164067268105.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/2007073308188490261
/tmp/adamTestMvnEoU0t8M/2007073308188490261/.ordered.sam.crc
/tmp/adamTestMvnEoU0t8M/2007073308188490261/ordered.sam
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3092290535575249806
/tmp/adamTestMvnEoU0t8M/reads127468480168560148313
/tmp/adamTestMvnEoU0t8M/reads127468480168560148313/reads12.sam
/tmp/adamTestMvnEoU0t8M/reads127468480168560148313/reads12.sam/part-r-00000.sam
/tmp/adamTestMvnEoU0t8M/reads127468480168560148313/reads12.sam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/reads127468480168560148313/reads12.sam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/reads127468480168560148313/reads12.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2434331958832761883.adam
/tmp/adamTestMvnEoU0t8M/TempSuite2434331958832761883.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2434331958832761883.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite2434331958832761883.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2434331958832761883.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2434331958832761883.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite2434331958832761883.adam/_header
/tmp/adamTestMvnEoU0t8M/TempSuite2434331958832761883.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite2434331958832761883.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2434331958832761883.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2434331958832761883.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite2434331958832761883.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2434331958832761883.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite5411690714683599093.adam
/tmp/adamTestMvnEoU0t8M/TempSuite5411690714683599093.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/TempSuite5411690714683599093.adam/part-00001-0fe4c991-0eda-4f80-82ef-7ab3f3e34e80-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite5411690714683599093.adam/.part-00000-0fe4c991-0eda-4f80-82ef-7ab3f3e34e80-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5411690714683599093.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/TempSuite5411690714683599093.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5411690714683599093.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite5411690714683599093.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5411690714683599093.adam/part-00000-0fe4c991-0eda-4f80-82ef-7ab3f3e34e80-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite5411690714683599093.adam/.part-00001-0fe4c991-0eda-4f80-82ef-7ab3f3e34e80-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5411690714683599093.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5411690714683599093.adam/part-00002-0fe4c991-0eda-4f80-82ef-7ab3f3e34e80-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite5411690714683599093.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5411690714683599093.adam/.part-00002-0fe4c991-0eda-4f80-82ef-7ab3f3e34e80-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5411690714683599093.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite3868085012153326322
/tmp/adamTestMvnEoU0t8M/TempSuite2934161094605155878.adam
/tmp/adamTestMvnEoU0t8M/TempSuite2934161094605155878.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2934161094605155878.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite2934161094605155878.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2934161094605155878.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite2934161094605155878.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite2934161094605155878.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2934161094605155878.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2934161094605155878.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite2934161094605155878.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2934161094605155878.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/5952234937850441498
/tmp/adamTestMvnEoU0t8M/5952234937850441498/ctg.adam
/tmp/adamTestMvnEoU0t8M/5952234937850441498/ctg.adam/part-00000-b2426766-47ed-4f68-98f8-cc646d8b4373-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/5952234937850441498/ctg.adam/.part-00000-b2426766-47ed-4f68-98f8-cc646d8b4373-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/5952234937850441498/ctg.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/5952234937850441498/ctg.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/5952234937850441498/ctg.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/5952234937850441498/ctg.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite158682763552952911
/tmp/adamTestMvnEoU0t8M/TempSuite185648142394766531
/tmp/adamTestMvnEoU0t8M/TempSuite2457424164691733004.bed
/tmp/adamTestMvnEoU0t8M/TempSuite2457424164691733004.bed/part-00002
/tmp/adamTestMvnEoU0t8M/TempSuite2457424164691733004.bed/.part-00003.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2457424164691733004.bed/part-00000
/tmp/adamTestMvnEoU0t8M/TempSuite2457424164691733004.bed/part-00003
/tmp/adamTestMvnEoU0t8M/TempSuite2457424164691733004.bed/.part-00002.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2457424164691733004.bed/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite2457424164691733004.bed/part-00001
/tmp/adamTestMvnEoU0t8M/TempSuite2457424164691733004.bed/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2457424164691733004.bed/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2457424164691733004.bed/.part-00001.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2210285960134309384
/tmp/adamTestMvnEoU0t8M/TempSuite5703715725812382492.adam
/tmp/adamTestMvnEoU0t8M/TempSuite5703715725812382492.adam/.part-00000-8a54a886-0875-491d-803f-acbdb4e25244-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5703715725812382492.adam/._samples.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5703715725812382492.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5703715725812382492.adam/.part-00001-8a54a886-0875-491d-803f-acbdb4e25244-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5703715725812382492.adam/part-00000-8a54a886-0875-491d-803f-acbdb4e25244-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite5703715725812382492.adam/_samples.avro
/tmp/adamTestMvnEoU0t8M/TempSuite5703715725812382492.adam/.part-00002-8a54a886-0875-491d-803f-acbdb4e25244-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5703715725812382492.adam/_header
/tmp/adamTestMvnEoU0t8M/TempSuite5703715725812382492.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite5703715725812382492.adam/part-00001-8a54a886-0875-491d-803f-acbdb4e25244-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite5703715725812382492.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5703715725812382492.adam/part-00002-8a54a886-0875-491d-803f-acbdb4e25244-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite5703715725812382492.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5703715725812382492.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3368650701017242254.gtf
/tmp/adamTestMvnEoU0t8M/TempSuite7472812458976472425.adam
/tmp/adamTestMvnEoU0t8M/TempSuite7472812458976472425.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7472812458976472425.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/TempSuite7472812458976472425.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite7472812458976472425.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7472812458976472425.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite7472812458976472425.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/TempSuite7472812458976472425.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7472812458976472425.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite7472812458976472425.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7472812458976472425.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7472812458976472425.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7472812458976472425.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite7472812458976472425.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7472812458976472425.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/.FeatureDatasetFunctionsSuite945508914842490125.gff3.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8664543419577158048
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite1376268757687311357
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite5561287105705386091.bed
/tmp/adamTestMvnEoU0t8M/TempSuite746912482229356011.adam
/tmp/adamTestMvnEoU0t8M/TempSuite746912482229356011.adam/part-00000-2c6917a8-a0aa-4d73-9a90-efed97d1e36c-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite746912482229356011.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/TempSuite746912482229356011.adam/.part-00000-2c6917a8-a0aa-4d73-9a90-efed97d1e36c-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite746912482229356011.adam/_header
/tmp/adamTestMvnEoU0t8M/TempSuite746912482229356011.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite746912482229356011.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite746912482229356011.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite746912482229356011.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite1437825839866799024.adam
/tmp/adamTestMvnEoU0t8M/TempSuite1437825839866799024.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1437825839866799024.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite1437825839866799024.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1437825839866799024.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1437825839866799024.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite1437825839866799024.adam/_header
/tmp/adamTestMvnEoU0t8M/TempSuite1437825839866799024.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite1437825839866799024.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1437825839866799024.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1437825839866799024.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite1437825839866799024.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1437825839866799024.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/noqual2524677189152667542
/tmp/adamTestMvnEoU0t8M/noqual2524677189152667542/noqualB.fastq
/tmp/adamTestMvnEoU0t8M/noqual2524677189152667542/noqualB.fastq/part-00000
/tmp/adamTestMvnEoU0t8M/noqual2524677189152667542/noqualB.fastq/_SUCCESS
/tmp/adamTestMvnEoU0t8M/noqual2524677189152667542/noqualB.fastq/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/noqual2524677189152667542/noqualB.fastq/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/noqual2524677189152667542/noqualA.sam
/tmp/adamTestMvnEoU0t8M/noqual2524677189152667542/noqualA.sam/part-r-00000.sam
/tmp/adamTestMvnEoU0t8M/noqual2524677189152667542/noqualA.sam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/noqual2524677189152667542/noqualA.sam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/noqual2524677189152667542/noqualA.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite1923254360905147833.interval_list
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite1923254360905147833.interval_list/part-00002
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite1923254360905147833.interval_list/.part-00003.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite1923254360905147833.interval_list/part-00000
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite1923254360905147833.interval_list/part-00003
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite1923254360905147833.interval_list/.part-00002.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite1923254360905147833.interval_list/_SUCCESS
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite1923254360905147833.interval_list/part-00001
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite1923254360905147833.interval_list/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite1923254360905147833.interval_list/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite1923254360905147833.interval_list/.part-00001.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1854792178567570327.bed
/tmp/adamTestMvnEoU0t8M/TempSuite1854792178567570327.bed/part-00000
/tmp/adamTestMvnEoU0t8M/TempSuite1854792178567570327.bed/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite1854792178567570327.bed/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1854792178567570327.bed/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8055070180012296390.sam
/tmp/adamTestMvnEoU0t8M/TempSuite2020947198223394989
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6426323713839964078.narrowPeak
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6426323713839964078.narrowPeak/part-00002
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6426323713839964078.narrowPeak/.part-00003.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6426323713839964078.narrowPeak/part-00000
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6426323713839964078.narrowPeak/part-00003
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6426323713839964078.narrowPeak/.part-00002.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6426323713839964078.narrowPeak/_SUCCESS
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6426323713839964078.narrowPeak/part-00001
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6426323713839964078.narrowPeak/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6426323713839964078.narrowPeak/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6426323713839964078.narrowPeak/.part-00001.crc
/tmp/adamTestMvnEoU0t8M/3578859588421461553
/tmp/adamTestMvnEoU0t8M/3578859588421461553/unordered.bam
/tmp/adamTestMvnEoU0t8M/3578859588421461553/.unordered.bam.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6538387026613621500.adam
/tmp/adamTestMvnEoU0t8M/TempSuite6538387026613621500.adam/.part-00002-d17897db-805f-4f8c-8aa1-5c004f61c391-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6538387026613621500.adam/._samples.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6538387026613621500.adam/.part-00001-d17897db-805f-4f8c-8aa1-5c004f61c391-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6538387026613621500.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6538387026613621500.adam/part-00000-d17897db-805f-4f8c-8aa1-5c004f61c391-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite6538387026613621500.adam/_samples.avro
/tmp/adamTestMvnEoU0t8M/TempSuite6538387026613621500.adam/_header
/tmp/adamTestMvnEoU0t8M/TempSuite6538387026613621500.adam/.part-00000-d17897db-805f-4f8c-8aa1-5c004f61c391-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6538387026613621500.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite6538387026613621500.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6538387026613621500.adam/part-00001-d17897db-805f-4f8c-8aa1-5c004f61c391-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite6538387026613621500.adam/part-00002-d17897db-805f-4f8c-8aa1-5c004f61c391-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite6538387026613621500.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6538387026613621500.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite283148852727481408.bed
/tmp/adamTestMvnEoU0t8M/1869798302548014245
/tmp/adamTestMvnEoU0t8M/1869798302548014245/chr20.contig.adam
/tmp/adamTestMvnEoU0t8M/1869798302548014245/chr20.contig.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/1869798302548014245/chr20.contig.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/1869798302548014245/chr20.contig.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/1869798302548014245/chr20.contig.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/1869798302548014245/chr20.contig.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/1869798302548014245/chr20.contig.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/1869798302548014245/chr20.contig.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/1869798302548014245/chr20.contig.adam/_metadata
/tmp/adamTestMvnEoU0t8M/1869798302548014245/chr20.contig.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/1869798302548014245/chr20.contig.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite8954647380751763503.narrowPeak
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite8954647380751763503.narrowPeak/part-00002
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite8954647380751763503.narrowPeak/.part-00003.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite8954647380751763503.narrowPeak/part-00000
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite8954647380751763503.narrowPeak/part-00003
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite8954647380751763503.narrowPeak/.part-00002.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite8954647380751763503.narrowPeak/_SUCCESS
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite8954647380751763503.narrowPeak/part-00001
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite8954647380751763503.narrowPeak/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite8954647380751763503.narrowPeak/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite8954647380751763503.narrowPeak/.part-00001.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2072463460740647356.adam
/tmp/adamTestMvnEoU0t8M/TempSuite2072463460740647356.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2072463460740647356.adam/.part-00000-392190c5-ab78-4823-8dbb-47e47baa4cf6-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2072463460740647356.adam/_header
/tmp/adamTestMvnEoU0t8M/TempSuite2072463460740647356.adam/part-00000-392190c5-ab78-4823-8dbb-47e47baa4cf6-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite2072463460740647356.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite2072463460740647356.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2072463460740647356.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2072463460740647356.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite2114460373566561308
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3379588962512282242.bed
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3379588962512282242.bed/part-00002
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3379588962512282242.bed/.part-00003.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3379588962512282242.bed/part-00000
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3379588962512282242.bed/part-00003
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3379588962512282242.bed/.part-00002.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3379588962512282242.bed/_SUCCESS
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3379588962512282242.bed/part-00001
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3379588962512282242.bed/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3379588962512282242.bed/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3379588962512282242.bed/.part-00001.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6085104764727961208
/tmp/adamTestMvnEoU0t8M/TempSuite700833288362556427
/tmp/adamTestMvnEoU0t8M/TempSuite2193175034595412554
/tmp/adamTestMvnEoU0t8M/TempSuite9181358575272528991
/tmp/adamTestMvnEoU0t8M/TempSuite3464959098321791075
/tmp/adamTestMvnEoU0t8M/TempSuite6577393030112852701
/tmp/adamTestMvnEoU0t8M/TempSuite6613772113670221389
/tmp/adamTestMvnEoU0t8M/small.vcf4447885285027010357.vcf
/tmp/adamTestMvnEoU0t8M/TempSuite4783827813001044644.adam
/tmp/adamTestMvnEoU0t8M/TempSuite4783827813001044644.adam/._partitionedByStartPos.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4783827813001044644.adam/._samples.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4783827813001044644.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4783827813001044644.adam/referenceName=13
/tmp/adamTestMvnEoU0t8M/TempSuite4783827813001044644.adam/referenceName=13/positionBin=0
/tmp/adamTestMvnEoU0t8M/TempSuite4783827813001044644.adam/referenceName=13/positionBin=0/.part-00000-fca748c0-5ef6-4ea6-ad28-6a615b8b8ecb.c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4783827813001044644.adam/referenceName=13/positionBin=0/part-00000-fca748c0-5ef6-4ea6-ad28-6a615b8b8ecb.c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite4783827813001044644.adam/_samples.avro
/tmp/adamTestMvnEoU0t8M/TempSuite4783827813001044644.adam/_header
/tmp/adamTestMvnEoU0t8M/TempSuite4783827813001044644.adam/_partitionedByStartPos
/tmp/adamTestMvnEoU0t8M/TempSuite4783827813001044644.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite4783827813001044644.adam/referenceName=2
/tmp/adamTestMvnEoU0t8M/TempSuite4783827813001044644.adam/referenceName=2/positionBin=0
/tmp/adamTestMvnEoU0t8M/TempSuite4783827813001044644.adam/referenceName=2/positionBin=0/.part-00000-fca748c0-5ef6-4ea6-ad28-6a615b8b8ecb.c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4783827813001044644.adam/referenceName=2/positionBin=0/part-00000-fca748c0-5ef6-4ea6-ad28-6a615b8b8ecb.c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite4783827813001044644.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4783827813001044644.adam/referenceName=1
/tmp/adamTestMvnEoU0t8M/TempSuite4783827813001044644.adam/referenceName=1/positionBin=0
/tmp/adamTestMvnEoU0t8M/TempSuite4783827813001044644.adam/referenceName=1/positionBin=0/.part-00000-fca748c0-5ef6-4ea6-ad28-6a615b8b8ecb.c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4783827813001044644.adam/referenceName=1/positionBin=0/part-00000-fca748c0-5ef6-4ea6-ad28-6a615b8b8ecb.c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite4783827813001044644.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4783827813001044644.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite7472812458976472425
/tmp/adamTestMvnEoU0t8M/TempSuite2934161094605155878
/tmp/adamTestMvnEoU0t8M/TempSuite5156472455783216627
/tmp/adamTestMvnEoU0t8M/TempSuite2856966117942829802.adam
/tmp/adamTestMvnEoU0t8M/TempSuite2856966117942829802.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2856966117942829802.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/TempSuite2856966117942829802.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite2856966117942829802.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2856966117942829802.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite2856966117942829802.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/TempSuite2856966117942829802.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2856966117942829802.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite2856966117942829802.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2856966117942829802.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2856966117942829802.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2856966117942829802.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite2856966117942829802.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2856966117942829802.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite5824723340182901615.adam
/tmp/adamTestMvnEoU0t8M/TempSuite5824723340182901615.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5824723340182901615.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite5824723340182901615.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5824723340182901615.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5824723340182901615.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite5824723340182901615.adam/_header
/tmp/adamTestMvnEoU0t8M/TempSuite5824723340182901615.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite5824723340182901615.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5824723340182901615.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5824723340182901615.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite5824723340182901615.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5824723340182901615.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite2181636601654099692
/tmp/adamTestMvnEoU0t8M/TempSuite9038405927597356112.adam
/tmp/adamTestMvnEoU0t8M/TempSuite9038405927597356112.adam/.part-00001-4ce7c383-572d-4c43-844d-a7d676cdf489-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite9038405927597356112.adam/part-00002-4ce7c383-572d-4c43-844d-a7d676cdf489-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite9038405927597356112.adam/.part-00002-4ce7c383-572d-4c43-844d-a7d676cdf489-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite9038405927597356112.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite9038405927597356112.adam/part-00001-4ce7c383-572d-4c43-844d-a7d676cdf489-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite9038405927597356112.adam/part-00000-4ce7c383-572d-4c43-844d-a7d676cdf489-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite9038405927597356112.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite9038405927597356112.adam/.part-00000-4ce7c383-572d-4c43-844d-a7d676cdf489-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite9038405927597356112.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite9038405927597356112.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite7086168389916543751
/tmp/adamTestMvnEoU0t8M/TempSuite6367495703745529491
/tmp/adamTestMvnEoU0t8M/sample1.queryname.sam7316032350027891191.queryname.sam
/tmp/adamTestMvnEoU0t8M/artificial.sam5278174001349095213.sam
/tmp/adamTestMvnEoU0t8M/TempSuite1994753721083758275
/tmp/adamTestMvnEoU0t8M/TempSuite5898318601170580401
/tmp/adamTestMvnEoU0t8M/javaAC1434944073785193822
/tmp/adamTestMvnEoU0t8M/javaAC1434944073785193822/testRdd.contig.adam
/tmp/adamTestMvnEoU0t8M/javaAC1434944073785193822/testRdd.contig.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/javaAC1434944073785193822/testRdd.contig.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/javaAC1434944073785193822/testRdd.contig.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/javaAC1434944073785193822/testRdd.contig.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/javaAC1434944073785193822/testRdd.contig.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/javaAC1434944073785193822/testRdd.contig.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/javaAC1434944073785193822/testRdd.contig.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/javaAC1434944073785193822/testRdd.contig.adam/_metadata
/tmp/adamTestMvnEoU0t8M/javaAC1434944073785193822/testRdd.contig.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/javaAC1434944073785193822/testRdd.contig.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite5039260302671872587
/tmp/adamTestMvnEoU0t8M/TempSuite2387741486779947129
/tmp/adamTestMvnEoU0t8M/TempSuite5813479585730128491.adam
/tmp/adamTestMvnEoU0t8M/TempSuite5813479585730128491.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5813479585730128491.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite5813479585730128491.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite5813479585730128491.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5813479585730128491.adam/._samples.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5813479585730128491.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5813479585730128491.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5813479585730128491.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite5813479585730128491.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5813479585730128491.adam/_samples.avro
/tmp/adamTestMvnEoU0t8M/TempSuite5813479585730128491.adam/_header
/tmp/adamTestMvnEoU0t8M/TempSuite5813479585730128491.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite5813479585730128491.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5813479585730128491.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite5813479585730128491.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite5813479585730128491.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5813479585730128491.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5813479585730128491.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite5813479585730128491.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5813479585730128491.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/8676237045960389604
/tmp/adamTestMvnEoU0t8M/8676237045960389604/test2.fa
/tmp/adamTestMvnEoU0t8M/8676237045960389604/test2.fa/part-00000
/tmp/adamTestMvnEoU0t8M/8676237045960389604/test2.fa/_SUCCESS
/tmp/adamTestMvnEoU0t8M/8676237045960389604/test2.fa/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/8676237045960389604/test2.fa/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6553599559710014818.narrowPeak
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6553599559710014818.narrowPeak/part-00002
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6553599559710014818.narrowPeak/.part-00003.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6553599559710014818.narrowPeak/part-00000
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6553599559710014818.narrowPeak/part-00003
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6553599559710014818.narrowPeak/.part-00002.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6553599559710014818.narrowPeak/_SUCCESS
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6553599559710014818.narrowPeak/part-00001
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6553599559710014818.narrowPeak/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6553599559710014818.narrowPeak/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6553599559710014818.narrowPeak/.part-00001.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5854691882346360292
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6571120832480003182
/tmp/adamTestMvnEoU0t8M/TempSuite8772945878744686486
/tmp/adamTestMvnEoU0t8M/TempSuite3365645009318009520
/tmp/adamTestMvnEoU0t8M/TempSuite3757973436636328940.adam
/tmp/adamTestMvnEoU0t8M/TempSuite3757973436636328940.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3757973436636328940.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite3757973436636328940.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3757973436636328940.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite3757973436636328940.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite3757973436636328940.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3757973436636328940.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3757973436636328940.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite3757973436636328940.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3757973436636328940.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite3708872069287054902.bed
/tmp/adamTestMvnEoU0t8M/TempSuite3708872069287054902.bed/part-00000
/tmp/adamTestMvnEoU0t8M/TempSuite3708872069287054902.bed/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite3708872069287054902.bed/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3708872069287054902.bed/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite406949198730291376.bed
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite406949198730291376.bed/part-00002
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite406949198730291376.bed/.part-00003.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite406949198730291376.bed/part-00000
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite406949198730291376.bed/part-00003
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite406949198730291376.bed/.part-00002.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite406949198730291376.bed/_SUCCESS
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite406949198730291376.bed/part-00001
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite406949198730291376.bed/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite406949198730291376.bed/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite406949198730291376.bed/.part-00001.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6085104764727961208.adam
/tmp/adamTestMvnEoU0t8M/TempSuite6085104764727961208.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6085104764727961208.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite6085104764727961208.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite6085104764727961208.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6085104764727961208.adam/._samples.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6085104764727961208.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6085104764727961208.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite6085104764727961208.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6085104764727961208.adam/_samples.avro
/tmp/adamTestMvnEoU0t8M/TempSuite6085104764727961208.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite6085104764727961208.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6085104764727961208.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite6085104764727961208.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite6085104764727961208.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6085104764727961208.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6085104764727961208.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite6085104764727961208.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6085104764727961208.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite9181358575272528991.bed
/tmp/adamTestMvnEoU0t8M/TempSuite9181358575272528991.bed/part-00000
/tmp/adamTestMvnEoU0t8M/TempSuite9181358575272528991.bed/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite9181358575272528991.bed/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/TempSuite9181358575272528991.bed/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite931115584483756663.adam
/tmp/adamTestMvnEoU0t8M/TempSuite931115584483756663.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite931115584483756663.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/TempSuite931115584483756663.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite931115584483756663.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite931115584483756663.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite931115584483756663.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/TempSuite931115584483756663.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite931115584483756663.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite931115584483756663.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite931115584483756663.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite931115584483756663.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite931115584483756663.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite931115584483756663.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite931115584483756663.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite9165311972398983655.adam
/tmp/adamTestMvnEoU0t8M/TempSuite9165311972398983655.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite9165311972398983655.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite9165311972398983655.adam/._samples.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite9165311972398983655.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite9165311972398983655.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/TempSuite9165311972398983655.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite9165311972398983655.adam/_samples.avro
/tmp/adamTestMvnEoU0t8M/TempSuite9165311972398983655.adam/_header
/tmp/adamTestMvnEoU0t8M/TempSuite9165311972398983655.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite9165311972398983655.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite9165311972398983655.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite9165311972398983655.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite9165311972398983655.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite9165311972398983655.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite1396316331192030717
/tmp/adamTestMvnEoU0t8M/1393435106203424764
/tmp/adamTestMvnEoU0t8M/1393435106203424764/bqsr1.vcf.bgz
/tmp/adamTestMvnEoU0t8M/1393435106203424764/bqsr1.vcf.bgz/part-r-00000.bgz
/tmp/adamTestMvnEoU0t8M/1393435106203424764/bqsr1.vcf.bgz/.part-r-00003.bgz.crc
/tmp/adamTestMvnEoU0t8M/1393435106203424764/bqsr1.vcf.bgz/part-r-00002.bgz
/tmp/adamTestMvnEoU0t8M/1393435106203424764/bqsr1.vcf.bgz/part-r-00001.bgz
/tmp/adamTestMvnEoU0t8M/1393435106203424764/bqsr1.vcf.bgz/.part-r-00000.bgz.crc
/tmp/adamTestMvnEoU0t8M/1393435106203424764/bqsr1.vcf.bgz/.part-r-00002.bgz.crc
/tmp/adamTestMvnEoU0t8M/1393435106203424764/bqsr1.vcf.bgz/_SUCCESS
/tmp/adamTestMvnEoU0t8M/1393435106203424764/bqsr1.vcf.bgz/part-r-00003.bgz
/tmp/adamTestMvnEoU0t8M/1393435106203424764/bqsr1.vcf.bgz/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/1393435106203424764/bqsr1.vcf.bgz/.part-r-00001.bgz.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7900149464941265466.adam
/tmp/adamTestMvnEoU0t8M/TempSuite7900149464941265466.adam/.part-00001-91059922-52fe-479c-9b2a-c675cf030979-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7900149464941265466.adam/.part-00000-91059922-52fe-479c-9b2a-c675cf030979-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7900149464941265466.adam/._samples.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7900149464941265466.adam/part-00001-91059922-52fe-479c-9b2a-c675cf030979-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite7900149464941265466.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7900149464941265466.adam/part-00000-91059922-52fe-479c-9b2a-c675cf030979-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite7900149464941265466.adam/_samples.avro
/tmp/adamTestMvnEoU0t8M/TempSuite7900149464941265466.adam/_header
/tmp/adamTestMvnEoU0t8M/TempSuite7900149464941265466.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite7900149464941265466.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7900149464941265466.adam/.part-00002-91059922-52fe-479c-9b2a-c675cf030979-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7900149464941265466.adam/part-00002-91059922-52fe-479c-9b2a-c675cf030979-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite7900149464941265466.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7900149464941265466.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite6822411113037560140.adam
/tmp/adamTestMvnEoU0t8M/TempSuite6822411113037560140.adam/part-00002-efbd135f-1fb6-4596-a15d-8663264f29f2-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite6822411113037560140.adam/._samples.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6822411113037560140.adam/part-00001-efbd135f-1fb6-4596-a15d-8663264f29f2-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite6822411113037560140.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6822411113037560140.adam/part-00000-efbd135f-1fb6-4596-a15d-8663264f29f2-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite6822411113037560140.adam/_samples.avro
/tmp/adamTestMvnEoU0t8M/TempSuite6822411113037560140.adam/.part-00002-efbd135f-1fb6-4596-a15d-8663264f29f2-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6822411113037560140.adam/.part-00001-efbd135f-1fb6-4596-a15d-8663264f29f2-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6822411113037560140.adam/_header
/tmp/adamTestMvnEoU0t8M/TempSuite6822411113037560140.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite6822411113037560140.adam/.part-00000-efbd135f-1fb6-4596-a15d-8663264f29f2-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6822411113037560140.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6822411113037560140.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6822411113037560140.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite4255808750790718941
/tmp/adamTestMvnEoU0t8M/TempSuite750774753155510783
/tmp/adamTestMvnEoU0t8M/TempSuite9140895870843647448
/tmp/adamTestMvnEoU0t8M/TempSuite5201677300291502765
/tmp/adamTestMvnEoU0t8M/TempSuite1148524649436906698
/tmp/adamTestMvnEoU0t8M/TempSuite2366759285294136383
/tmp/adamTestMvnEoU0t8M/TempSuite4498481262550917795
/tmp/adamTestMvnEoU0t8M/TempSuite7275930960354912014
/tmp/adamTestMvnEoU0t8M/sorted-variants.vcf7925107270533595759.vcf
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6488204999934567222.narrowPeak
/tmp/adamTestMvnEoU0t8M/TempSuite3142527425785939104
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite1923254360905147833
/tmp/adamTestMvnEoU0t8M/TempSuite5071176245738225283
/tmp/adamTestMvnEoU0t8M/2426331533588022434
/tmp/adamTestMvnEoU0t8M/2426331533588022434/binned.adam
/tmp/adamTestMvnEoU0t8M/2426331533588022434/binned.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/2426331533588022434/binned.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/2426331533588022434/binned.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/2426331533588022434/binned.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/2426331533588022434/binned.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/2426331533588022434/binned.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/2426331533588022434/binned.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/2426331533588022434/binned.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/2426331533588022434/binned.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/2426331533588022434/binned.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/2426331533588022434/binned.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/2426331533588022434/binned.adam/_metadata
/tmp/adamTestMvnEoU0t8M/2426331533588022434/binned.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/2426331533588022434/binned.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite7496277665554148249
/tmp/adamTestMvnEoU0t8M/TempSuite6335558184837734842.adam
/tmp/adamTestMvnEoU0t8M/TempSuite6335558184837734842.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6335558184837734842.adam/part-00000-7fb510a6-23ed-493a-a45f-b13e05a5c44c-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite6335558184837734842.adam/part-00002-7fb510a6-23ed-493a-a45f-b13e05a5c44c-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite6335558184837734842.adam/.part-00002-7fb510a6-23ed-493a-a45f-b13e05a5c44c-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6335558184837734842.adam/_header
/tmp/adamTestMvnEoU0t8M/TempSuite6335558184837734842.adam/part-00001-7fb510a6-23ed-493a-a45f-b13e05a5c44c-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite6335558184837734842.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite6335558184837734842.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6335558184837734842.adam/.part-00001-7fb510a6-23ed-493a-a45f-b13e05a5c44c-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6335558184837734842.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6335558184837734842.adam/.part-00000-7fb510a6-23ed-493a-a45f-b13e05a5c44c-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6335558184837734842.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite203532377767532161
/tmp/adamTestMvnEoU0t8M/1205270047945500072
/tmp/adamTestMvnEoU0t8M/1205270047945500072/out.bam_head
/tmp/adamTestMvnEoU0t8M/1205270047945500072/.out.bam_head.crc
/tmp/adamTestMvnEoU0t8M/1205270047945500072/out.bam_tail
/tmp/adamTestMvnEoU0t8M/1205270047945500072/out.bam_tail/part-r-00001.bam
/tmp/adamTestMvnEoU0t8M/1205270047945500072/out.bam_tail/.part-r-00002.bam.crc
/tmp/adamTestMvnEoU0t8M/1205270047945500072/out.bam_tail/.part-r-00001.bam.crc
/tmp/adamTestMvnEoU0t8M/1205270047945500072/out.bam_tail/.part-r-00003.bam.crc
/tmp/adamTestMvnEoU0t8M/1205270047945500072/out.bam_tail/part-r-00002.bam
/tmp/adamTestMvnEoU0t8M/1205270047945500072/out.bam_tail/part-r-00000.bam
/tmp/adamTestMvnEoU0t8M/1205270047945500072/out.bam_tail/part-r-00003.bam
/tmp/adamTestMvnEoU0t8M/1205270047945500072/out.bam_tail/_SUCCESS
/tmp/adamTestMvnEoU0t8M/1205270047945500072/out.bam_tail/.part-r-00000.bam.crc
/tmp/adamTestMvnEoU0t8M/1205270047945500072/out.bam_tail/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/1205270047945500072/out.bam
/tmp/adamTestMvnEoU0t8M/1205270047945500072/.out.bam.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite7399768705084499610.gff3
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite7399768705084499610.gff3/part-00002
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite7399768705084499610.gff3/.part-00003.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite7399768705084499610.gff3/part-00000
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite7399768705084499610.gff3/part-00003
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite7399768705084499610.gff3/.part-00002.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite7399768705084499610.gff3/_SUCCESS
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite7399768705084499610.gff3/part-00001
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite7399768705084499610.gff3/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite7399768705084499610.gff3/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite7399768705084499610.gff3/.part-00001.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1830050038291123371
/tmp/adamTestMvnEoU0t8M/TempSuite6458337239577476245
/tmp/adamTestMvnEoU0t8M/TempSuite8769436855535426958.sam
/tmp/adamTestMvnEoU0t8M/TempSuite8769436855535426958.sam/part-r-00000.sam
/tmp/adamTestMvnEoU0t8M/TempSuite8769436855535426958.sam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite8769436855535426958.sam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8769436855535426958.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8405459197021936755.adam
/tmp/adamTestMvnEoU0t8M/TempSuite8405459197021936755.adam/part-00000-ebe09a86-2aa7-4d11-a15b-ece9bf52cf43-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite8405459197021936755.adam/part-00001-ebe09a86-2aa7-4d11-a15b-ece9bf52cf43-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite8405459197021936755.adam/.part-00001-ebe09a86-2aa7-4d11-a15b-ece9bf52cf43-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8405459197021936755.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite8405459197021936755.adam/.part-00002-ebe09a86-2aa7-4d11-a15b-ece9bf52cf43-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8405459197021936755.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8405459197021936755.adam/.part-00000-ebe09a86-2aa7-4d11-a15b-ece9bf52cf43-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8405459197021936755.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8405459197021936755.adam/part-00002-ebe09a86-2aa7-4d11-a15b-ece9bf52cf43-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite8405459197021936755.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite283148852727481408
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite5189090959772134791.bed
/tmp/adamTestMvnEoU0t8M/javaAC4584970797729317203
/tmp/adamTestMvnEoU0t8M/javaAC4584970797729317203/testRdd.variant.adam
/tmp/adamTestMvnEoU0t8M/javaAC4584970797729317203/testRdd.variant.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/javaAC4584970797729317203/testRdd.variant.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/javaAC4584970797729317203/testRdd.variant.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/javaAC4584970797729317203/testRdd.variant.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/javaAC4584970797729317203/testRdd.variant.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/javaAC4584970797729317203/testRdd.variant.adam/_header
/tmp/adamTestMvnEoU0t8M/javaAC4584970797729317203/testRdd.variant.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/javaAC4584970797729317203/testRdd.variant.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/javaAC4584970797729317203/testRdd.variant.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/javaAC4584970797729317203/testRdd.variant.adam/_metadata
/tmp/adamTestMvnEoU0t8M/javaAC4584970797729317203/testRdd.variant.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/javaAC4584970797729317203/testRdd.variant.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite6682128924213323024.adam
/tmp/adamTestMvnEoU0t8M/TempSuite6682128924213323024.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6682128924213323024.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite6682128924213323024.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite6682128924213323024.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6682128924213323024.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6682128924213323024.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6682128924213323024.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite6682128924213323024.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6682128924213323024.adam/_header
/tmp/adamTestMvnEoU0t8M/TempSuite6682128924213323024.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite6682128924213323024.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6682128924213323024.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite6682128924213323024.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite6682128924213323024.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6682128924213323024.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6682128924213323024.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite6682128924213323024.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6682128924213323024.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite4023823909757523285
/tmp/adamTestMvnEoU0t8M/TempSuite1761325638538947797
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite2597205310353495890
/tmp/adamTestMvnEoU0t8M/TempSuite3872231978081642071
/tmp/adamTestMvnEoU0t8M/TempSuite1855003137219430940
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6227452441314127263
/tmp/adamTestMvnEoU0t8M/sample_coverage.bed3472046535821611476.bed
/tmp/adamTestMvnEoU0t8M/TempSuite1232910945911055456
/tmp/adamTestMvnEoU0t8M/TempSuite4960592003074090947
/tmp/adamTestMvnEoU0t8M/TempSuite8752258975016245762reads12.sam
/tmp/adamTestMvnEoU0t8M/TempSuite5690764516138967938.adam
/tmp/adamTestMvnEoU0t8M/TempSuite5690764516138967938.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5690764516138967938.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/TempSuite5690764516138967938.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite5690764516138967938.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5690764516138967938.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite5690764516138967938.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/TempSuite5690764516138967938.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5690764516138967938.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite5690764516138967938.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5690764516138967938.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5690764516138967938.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5690764516138967938.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite5690764516138967938.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5690764516138967938.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3376840681559928864.interval_list
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3376840681559928864.interval_list/part-00002
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3376840681559928864.interval_list/.part-00003.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3376840681559928864.interval_list/part-00000
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3376840681559928864.interval_list/part-00003
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3376840681559928864.interval_list/.part-00002.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3376840681559928864.interval_list/_SUCCESS
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3376840681559928864.interval_list/part-00001
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3376840681559928864.interval_list/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3376840681559928864.interval_list/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3376840681559928864.interval_list/.part-00001.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5411690714683599093
/tmp/adamTestMvnEoU0t8M/TempSuite1031905937383720643.adam
/tmp/adamTestMvnEoU0t8M/TempSuite1031905937383720643.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1031905937383720643.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/TempSuite1031905937383720643.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite1031905937383720643.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1031905937383720643.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite1031905937383720643.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/TempSuite1031905937383720643.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1031905937383720643.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite1031905937383720643.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1031905937383720643.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1031905937383720643.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1031905937383720643.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite1031905937383720643.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1031905937383720643.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite7007022466307716508
/tmp/adamTestMvnEoU0t8M/TempSuite7605119870582083339
/tmp/adamTestMvnEoU0t8M/TempSuite4251137371915554141.fq
/tmp/adamTestMvnEoU0t8M/TempSuite4251137371915554141.fq/part-00000
/tmp/adamTestMvnEoU0t8M/TempSuite4251137371915554141.fq/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite4251137371915554141.fq/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4251137371915554141.fq/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4496667831631442918
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3368650701017242254
/tmp/adamTestMvnEoU0t8M/TempSuite2982600334688255760.adam
/tmp/adamTestMvnEoU0t8M/TempSuite2982600334688255760.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2982600334688255760.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/TempSuite2982600334688255760.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite2982600334688255760.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2982600334688255760.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite2982600334688255760.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/TempSuite2982600334688255760.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2982600334688255760.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite2982600334688255760.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2982600334688255760.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2982600334688255760.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2982600334688255760.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite2982600334688255760.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2982600334688255760.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite700833288362556427.adam
/tmp/adamTestMvnEoU0t8M/TempSuite700833288362556427.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite700833288362556427.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/TempSuite700833288362556427.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite700833288362556427.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite700833288362556427.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite700833288362556427.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/TempSuite700833288362556427.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite700833288362556427.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite700833288362556427.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite700833288362556427.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite700833288362556427.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite700833288362556427.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite700833288362556427.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite700833288362556427.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite4740515375928370276
/tmp/adamTestMvnEoU0t8M/618230254803344914
/tmp/adamTestMvnEoU0t8M/618230254803344914/sorted.vcf
/tmp/adamTestMvnEoU0t8M/618230254803344914/.sorted.vcf.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8755280941645869626.fq
/tmp/adamTestMvnEoU0t8M/.TempSuite4833271400274985209.sam.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7321953706685809220.adam
/tmp/adamTestMvnEoU0t8M/TempSuite7321953706685809220.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7321953706685809220.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/TempSuite7321953706685809220.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite7321953706685809220.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7321953706685809220.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite7321953706685809220.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/TempSuite7321953706685809220.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7321953706685809220.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite7321953706685809220.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7321953706685809220.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7321953706685809220.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7321953706685809220.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite7321953706685809220.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7321953706685809220.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite5394916199145313878
/tmp/adamTestMvnEoU0t8M/TempSuite2832087827007633352.adam
/tmp/adamTestMvnEoU0t8M/TempSuite2832087827007633352.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2832087827007633352.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite2832087827007633352.adam/._samples.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2832087827007633352.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2832087827007633352.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2832087827007633352.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite2832087827007633352.adam/_samples.avro
/tmp/adamTestMvnEoU0t8M/TempSuite2832087827007633352.adam/_header
/tmp/adamTestMvnEoU0t8M/TempSuite2832087827007633352.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite2832087827007633352.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2832087827007633352.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2832087827007633352.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite2832087827007633352.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2832087827007633352.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite2280311670300359848
/tmp/adamTestMvnEoU0t8M/TempSuite284125889161052798.adam
/tmp/adamTestMvnEoU0t8M/TempSuite284125889161052798.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite284125889161052798.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite284125889161052798.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite284125889161052798.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/TempSuite284125889161052798.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite284125889161052798.adam/_header
/tmp/adamTestMvnEoU0t8M/TempSuite284125889161052798.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite284125889161052798.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite284125889161052798.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite284125889161052798.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite284125889161052798.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite284125889161052798.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite7093999922648379422
/tmp/adamTestMvnEoU0t8M/TempSuite6885394612410019852
/tmp/adamTestMvnEoU0t8M/TempSuite4882015427506645560.adam
/tmp/adamTestMvnEoU0t8M/TempSuite4882015427506645560.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4882015427506645560.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite4882015427506645560.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite4882015427506645560.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4882015427506645560.adam/._samples.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4882015427506645560.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4882015427506645560.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite4882015427506645560.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4882015427506645560.adam/_samples.avro
/tmp/adamTestMvnEoU0t8M/TempSuite4882015427506645560.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite4882015427506645560.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4882015427506645560.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite4882015427506645560.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite4882015427506645560.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4882015427506645560.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4882015427506645560.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite4882015427506645560.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4882015427506645560.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/1557957041473-0
/tmp/adamTestMvnEoU0t8M/1557957041473-0/test_single.vcf
/tmp/adamTestMvnEoU0t8M/1557957041473-0/test.vcf
/tmp/adamTestMvnEoU0t8M/1557957041473-0/test.vcf/part-r-00000
/tmp/adamTestMvnEoU0t8M/1557957041473-0/test.vcf/_SUCCESS
/tmp/adamTestMvnEoU0t8M/1557957041473-0/test.vcf/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/1557957041473-0/test.vcf/.part-r-00000.crc
/tmp/adamTestMvnEoU0t8M/1557957041473-0/.test_single.vcf.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5011188957161674893.bed
/tmp/adamTestMvnEoU0t8M/TempSuite5011188957161674893.bed/part-00000
/tmp/adamTestMvnEoU0t8M/TempSuite5011188957161674893.bed/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite5011188957161674893.bed/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5011188957161674893.bed/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3376840681559928864
/tmp/adamTestMvnEoU0t8M/bqsr18068091548145754777
/tmp/adamTestMvnEoU0t8M/bqsr18068091548145754777/.bqsr1.sam.crc
/tmp/adamTestMvnEoU0t8M/bqsr18068091548145754777/bqsr1.sam
/tmp/adamTestMvnEoU0t8M/TempSuite4496667831631442918.adam
/tmp/adamTestMvnEoU0t8M/TempSuite4496667831631442918.adam/part-00000-840768bc-788d-4f19-82bb-56de84bab329-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite4496667831631442918.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/TempSuite4496667831631442918.adam/.part-00000-840768bc-788d-4f19-82bb-56de84bab329-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4496667831631442918.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/TempSuite4496667831631442918.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4496667831631442918.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite4496667831631442918.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4496667831631442918.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4496667831631442918.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4496667831631442918.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite8705914052647752731
/tmp/adamTestMvnEoU0t8M/TempSuite1761325638538947797.adam
/tmp/adamTestMvnEoU0t8M/TempSuite1761325638538947797.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1761325638538947797.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite1761325638538947797.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite1761325638538947797.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1761325638538947797.adam/._samples.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1761325638538947797.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1761325638538947797.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite1761325638538947797.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1761325638538947797.adam/_samples.avro
/tmp/adamTestMvnEoU0t8M/TempSuite1761325638538947797.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite1761325638538947797.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1761325638538947797.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite1761325638538947797.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite1761325638538947797.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1761325638538947797.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1761325638538947797.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite1761325638538947797.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1761325638538947797.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/unordered.sam2268193060329467405.sam
/tmp/adamTestMvnEoU0t8M/.TempSuite4659656500088687514_1.fq.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3413790796459173269.bed
/tmp/adamTestMvnEoU0t8M/TempSuite3413790796459173269.bed/part-00000
/tmp/adamTestMvnEoU0t8M/TempSuite3413790796459173269.bed/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite3413790796459173269.bed/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3413790796459173269.bed/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3857848531948874574
/tmp/adamTestMvnEoU0t8M/TempSuite3464707990468339589
/tmp/adamTestMvnEoU0t8M/TempSuite8001818052641621171
/tmp/adamTestMvnEoU0t8M/1557957271839-0
/tmp/adamTestMvnEoU0t8M/1557957271839-0/test.fa
/tmp/adamTestMvnEoU0t8M/1557957271839-0/test.fa/part-00000
/tmp/adamTestMvnEoU0t8M/1557957271839-0/test.fa/_SUCCESS
/tmp/adamTestMvnEoU0t8M/1557957271839-0/test.fa/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/1557957271839-0/test.fa/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/ordered.sam5152183774692454633.sam
/tmp/adamTestMvnEoU0t8M/TempSuite4814162300788275764
/tmp/adamTestMvnEoU0t8M/TempSuite1232910945911055456.adam
/tmp/adamTestMvnEoU0t8M/TempSuite1232910945911055456.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1232910945911055456.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/TempSuite1232910945911055456.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite1232910945911055456.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1232910945911055456.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite1232910945911055456.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/TempSuite1232910945911055456.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1232910945911055456.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite1232910945911055456.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1232910945911055456.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1232910945911055456.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1232910945911055456.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite1232910945911055456.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1232910945911055456.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite5604299932313951942
/tmp/adamTestMvnEoU0t8M/random.vcf8799512084142371542.vcf
/tmp/adamTestMvnEoU0t8M/artificial.cram7395502287679582277.cram
/tmp/adamTestMvnEoU0t8M/.TempSuite3464959098321791075.bam.crc
/tmp/adamTestMvnEoU0t8M/TempSuite9038405927597356112
/tmp/adamTestMvnEoU0t8M/TempSuite2311389357195826229.adam
/tmp/adamTestMvnEoU0t8M/TempSuite2311389357195826229.adam/part-00002-2e681588-ddfd-4830-8352-8b052bd2775e-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite2311389357195826229.adam/part-00000-2e681588-ddfd-4830-8352-8b052bd2775e-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite2311389357195826229.adam/._samples.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2311389357195826229.adam/.part-00000-2e681588-ddfd-4830-8352-8b052bd2775e-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2311389357195826229.adam/.part-00002-2e681588-ddfd-4830-8352-8b052bd2775e-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2311389357195826229.adam/_samples.avro
/tmp/adamTestMvnEoU0t8M/TempSuite2311389357195826229.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite2311389357195826229.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2311389357195826229.adam/.part-00001-2e681588-ddfd-4830-8352-8b052bd2775e-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2311389357195826229.adam/part-00001-2e681588-ddfd-4830-8352-8b052bd2775e-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite2311389357195826229.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2311389357195826229.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/3672258453077283454
/tmp/adamTestMvnEoU0t8M/3672258453077283454/tag.sam
/tmp/adamTestMvnEoU0t8M/3672258453077283454/.tag.sam.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6682128924213323024
/tmp/adamTestMvnEoU0t8M/4938780219951841793
/tmp/adamTestMvnEoU0t8M/4938780219951841793/artificial.cram
/tmp/adamTestMvnEoU0t8M/4938780219951841793/.artificial.cram.crc
/tmp/adamTestMvnEoU0t8M/javaAC6111046989214226744
/tmp/adamTestMvnEoU0t8M/javaAC6111046989214226744/testRdd.feature.adam
/tmp/adamTestMvnEoU0t8M/javaAC6111046989214226744/testRdd.feature.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/javaAC6111046989214226744/testRdd.feature.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/javaAC6111046989214226744/testRdd.feature.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnEoU0t8M/javaAC6111046989214226744/testRdd.feature.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/javaAC6111046989214226744/testRdd.feature.adam/._samples.avro.crc
/tmp/adamTestMvnEoU0t8M/javaAC6111046989214226744/testRdd.feature.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/javaAC6111046989214226744/testRdd.feature.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/javaAC6111046989214226744/testRdd.feature.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/javaAC6111046989214226744/testRdd.feature.adam/_samples.avro
/tmp/adamTestMvnEoU0t8M/javaAC6111046989214226744/testRdd.feature.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/javaAC6111046989214226744/testRdd.feature.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/javaAC6111046989214226744/testRdd.feature.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnEoU0t8M/javaAC6111046989214226744/testRdd.feature.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnEoU0t8M/javaAC6111046989214226744/testRdd.feature.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/javaAC6111046989214226744/testRdd.feature.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/javaAC6111046989214226744/testRdd.feature.adam/_metadata
/tmp/adamTestMvnEoU0t8M/javaAC6111046989214226744/testRdd.feature.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/javaAC6111046989214226744/testRdd.feature.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite3413790796459173269
/tmp/adamTestMvnEoU0t8M/TempSuite5198920459772504883.adam
/tmp/adamTestMvnEoU0t8M/TempSuite5198920459772504883.adam/._samples.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5198920459772504883.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5198920459772504883.adam/_samples.avro
/tmp/adamTestMvnEoU0t8M/TempSuite5198920459772504883.adam/_header
/tmp/adamTestMvnEoU0t8M/TempSuite5198920459772504883.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite5198920459772504883.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5198920459772504883.adam/part-00000-3ae96002-53ff-4d6e-a359-004bf40385fd-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite5198920459772504883.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5198920459772504883.adam/.part-00000-3ae96002-53ff-4d6e-a359-004bf40385fd-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5198920459772504883.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite3098090126085295333.fq
/tmp/adamTestMvnEoU0t8M/TempSuite3098090126085295333.fq/part-00000
/tmp/adamTestMvnEoU0t8M/TempSuite3098090126085295333.fq/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite3098090126085295333.fq/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3098090126085295333.fq/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/sample_coverage.bed6071187554627745509.bed
/tmp/adamTestMvnEoU0t8M/TempSuite9043334763650099102.fq
/tmp/adamTestMvnEoU0t8M/TempSuite9043334763650099102.fq/part-00000
/tmp/adamTestMvnEoU0t8M/TempSuite9043334763650099102.fq/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite9043334763650099102.fq/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/TempSuite9043334763650099102.fq/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1674926872114188885.adam
/tmp/adamTestMvnEoU0t8M/TempSuite1674926872114188885.adam/.part-00005-105ec628-851b-48ff-80cd-13f3cb852102-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1674926872114188885.adam/part-00000-105ec628-851b-48ff-80cd-13f3cb852102-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite1674926872114188885.adam/._samples.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1674926872114188885.adam/_samples.avro
/tmp/adamTestMvnEoU0t8M/TempSuite1674926872114188885.adam/.part-00000-105ec628-851b-48ff-80cd-13f3cb852102-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1674926872114188885.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite1674926872114188885.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1674926872114188885.adam/part-00005-105ec628-851b-48ff-80cd-13f3cb852102-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite1674926872114188885.adam/part-00003-105ec628-851b-48ff-80cd-13f3cb852102-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite1674926872114188885.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1674926872114188885.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite1674926872114188885.adam/.part-00003-105ec628-851b-48ff-80cd-13f3cb852102-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/1557957270500-0
/tmp/adamTestMvnEoU0t8M/1557957270500-0/test.fa
/tmp/adamTestMvnEoU0t8M/1557957270500-0/test.fa/part-00000
/tmp/adamTestMvnEoU0t8M/1557957270500-0/test.fa/_SUCCESS
/tmp/adamTestMvnEoU0t8M/1557957270500-0/test.fa/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/1557957270500-0/test.fa/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6854950890597975091
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite7399768705084499610
/tmp/adamTestMvnEoU0t8M/TempSuite7767451435060779588
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6571120832480003182.narrowPeak
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6571120832480003182.narrowPeak/part-00002
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6571120832480003182.narrowPeak/.part-00003.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6571120832480003182.narrowPeak/part-00000
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6571120832480003182.narrowPeak/part-00003
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6571120832480003182.narrowPeak/.part-00002.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6571120832480003182.narrowPeak/_SUCCESS
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6571120832480003182.narrowPeak/part-00001
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6571120832480003182.narrowPeak/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6571120832480003182.narrowPeak/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6571120832480003182.narrowPeak/.part-00001.crc
/tmp/adamTestMvnEoU0t8M/9148734259956044611
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3006666452495851158
/tmp/adamTestMvnEoU0t8M/1254126530819230316
/tmp/adamTestMvnEoU0t8M/1254126530819230316/tag.sam
/tmp/adamTestMvnEoU0t8M/1254126530819230316/.tag.sam.crc
/tmp/adamTestMvnEoU0t8M/TempSuite9051789850200231678.fa
/tmp/adamTestMvnEoU0t8M/TempSuite9051789850200231678.fa/part-00000
/tmp/adamTestMvnEoU0t8M/TempSuite9051789850200231678.fa/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite9051789850200231678.fa/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/TempSuite9051789850200231678.fa/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite8002895390276983789.gtf
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite8002895390276983789.gtf/part-00002
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite8002895390276983789.gtf/.part-00003.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite8002895390276983789.gtf/part-00000
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite8002895390276983789.gtf/part-00003
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite8002895390276983789.gtf/.part-00002.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite8002895390276983789.gtf/_SUCCESS
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite8002895390276983789.gtf/part-00001
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite8002895390276983789.gtf/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite8002895390276983789.gtf/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite8002895390276983789.gtf/.part-00001.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1986668377157398330
/tmp/adamTestMvnEoU0t8M/.TempSuite1127008758708836432.bam.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3753716692246617187
/tmp/adamTestMvnEoU0t8M/unordered.sam5224980848923496802.sam
/tmp/adamTestMvnEoU0t8M/TempSuite5168480406662991037.sam
/tmp/adamTestMvnEoU0t8M/TempSuite5168480406662991037.sam/part-r-00000.sam
/tmp/adamTestMvnEoU0t8M/TempSuite5168480406662991037.sam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite5168480406662991037.sam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5168480406662991037.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnEoU0t8M/unordered.sam1444425207530630279.sam
/tmp/adamTestMvnEoU0t8M/TempSuite8087700569715236982.bed
/tmp/adamTestMvnEoU0t8M/TempSuite8087700569715236982.bed/part-00000
/tmp/adamTestMvnEoU0t8M/TempSuite8087700569715236982.bed/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite8087700569715236982.bed/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8087700569715236982.bed/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite545594944430585836
/tmp/adamTestMvnEoU0t8M/TempSuite5996960554874589880.sam
/tmp/adamTestMvnEoU0t8M/TempSuite5996960554874589880.sam/part-r-00000.sam
/tmp/adamTestMvnEoU0t8M/TempSuite5996960554874589880.sam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite5996960554874589880.sam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5996960554874589880.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1812548796571574657fragments.adam
/tmp/adamTestMvnEoU0t8M/TempSuite1812548796571574657fragments.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1812548796571574657fragments.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/TempSuite1812548796571574657fragments.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite1812548796571574657fragments.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1812548796571574657fragments.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite1812548796571574657fragments.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/TempSuite1812548796571574657fragments.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1812548796571574657fragments.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite1812548796571574657fragments.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1812548796571574657fragments.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1812548796571574657fragments.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1812548796571574657fragments.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite1812548796571574657fragments.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1812548796571574657fragments.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite4603293272092867130.adam
/tmp/adamTestMvnEoU0t8M/TempSuite4603293272092867130.adam/part-00000-dd56401e-9371-4a6f-a0c0-829b1c724f77-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite4603293272092867130.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4603293272092867130.adam/_header
/tmp/adamTestMvnEoU0t8M/TempSuite4603293272092867130.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite4603293272092867130.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4603293272092867130.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4603293272092867130.adam/.part-00000-dd56401e-9371-4a6f-a0c0-829b1c724f77-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4603293272092867130.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite1031905937383720643
/tmp/adamTestMvnEoU0t8M/TempSuite8879195099579897517_1.fq
/tmp/adamTestMvnEoU0t8M/TempSuite8879195099579897517_1.fq/part-00000
/tmp/adamTestMvnEoU0t8M/TempSuite8879195099579897517_1.fq/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite8879195099579897517_1.fq/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8879195099579897517_1.fq/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/random.vcf6229547028890696809.vcf
/tmp/adamTestMvnEoU0t8M/TempSuite4720628836161193522
/tmp/adamTestMvnEoU0t8M/TempSuite54150581273564631
/tmp/adamTestMvnEoU0t8M/TempSuite6458337239577476245.adam
/tmp/adamTestMvnEoU0t8M/TempSuite6458337239577476245.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6458337239577476245.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite6458337239577476245.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6458337239577476245.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite6458337239577476245.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite6458337239577476245.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6458337239577476245.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6458337239577476245.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite6458337239577476245.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6458337239577476245.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite5622421079124184762.bed
/tmp/adamTestMvnEoU0t8M/TempSuite5622421079124184762.bed/part-00000
/tmp/adamTestMvnEoU0t8M/TempSuite5622421079124184762.bed/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite5622421079124184762.bed/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5622421079124184762.bed/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5180075571609828842
/tmp/adamTestMvnEoU0t8M/TempSuite4135561978591628625.adam
/tmp/adamTestMvnEoU0t8M/TempSuite4135561978591628625.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4135561978591628625.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite4135561978591628625.adam/._samples.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4135561978591628625.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4135561978591628625.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4135561978591628625.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite4135561978591628625.adam/_samples.avro
/tmp/adamTestMvnEoU0t8M/TempSuite4135561978591628625.adam/_header
/tmp/adamTestMvnEoU0t8M/TempSuite4135561978591628625.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite4135561978591628625.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4135561978591628625.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4135561978591628625.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite4135561978591628625.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4135561978591628625.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/1557956909428-0
/tmp/adamTestMvnEoU0t8M/1557956909428-0/bamReads.adam
/tmp/adamTestMvnEoU0t8M/1557956909428-0/bamReads.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/1557956909428-0/bamReads.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/1557956909428-0/bamReads.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/1557956909428-0/bamReads.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/1557956909428-0/bamReads.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/1557956909428-0/bamReads.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/1557956909428-0/bamReads.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/1557956909428-0/bamReads.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/1557956909428-0/bamReads.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/1557956909428-0/bamReads.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/1557956909428-0/bamReads.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/1557956909428-0/bamReads.adam/_metadata
/tmp/adamTestMvnEoU0t8M/1557956909428-0/bamReads.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/1557956909428-0/bamReads.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite8752258975016245762reads12.sam_2
/tmp/adamTestMvnEoU0t8M/TempSuite7798710522723630865
/tmp/adamTestMvnEoU0t8M/1012636906659995825
/tmp/adamTestMvnEoU0t8M/1012636906659995825/variants.adam
/tmp/adamTestMvnEoU0t8M/1012636906659995825/variants.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/1012636906659995825/variants.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/1012636906659995825/variants.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/1012636906659995825/variants.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/1012636906659995825/variants.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/1012636906659995825/variants.adam/_header
/tmp/adamTestMvnEoU0t8M/1012636906659995825/variants.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/1012636906659995825/variants.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/1012636906659995825/variants.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/1012636906659995825/variants.adam/_metadata
/tmp/adamTestMvnEoU0t8M/1012636906659995825/variants.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/1012636906659995825/variants.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/bqsr11512623047593915412
/tmp/adamTestMvnEoU0t8M/bqsr11512623047593915412/.bqsr1.bam.crc
/tmp/adamTestMvnEoU0t8M/bqsr11512623047593915412/bqsr1.bam
/tmp/adamTestMvnEoU0t8M/TempSuite8092413153653920599_2.fq
/tmp/adamTestMvnEoU0t8M/TempSuite8092413153653920599_2.fq/part-00000
/tmp/adamTestMvnEoU0t8M/TempSuite8092413153653920599_2.fq/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite8092413153653920599_2.fq/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8092413153653920599_2.fq/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4559106432020423036
/tmp/adamTestMvnEoU0t8M/TempSuite3098090126085295333
/tmp/adamTestMvnEoU0t8M/TempSuite8993668401263324697
/tmp/adamTestMvnEoU0t8M/TempSuite6090014915879511508
/tmp/adamTestMvnEoU0t8M/TempSuite8769436855535426958
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite2597205310353495890.gtf
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite2597205310353495890.gtf/part-00002
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite2597205310353495890.gtf/.part-00003.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite2597205310353495890.gtf/part-00000
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite2597205310353495890.gtf/part-00003
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite2597205310353495890.gtf/.part-00002.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite2597205310353495890.gtf/_SUCCESS
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite2597205310353495890.gtf/part-00001
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite2597205310353495890.gtf/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite2597205310353495890.gtf/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite2597205310353495890.gtf/.part-00001.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8402006164067268105
/tmp/adamTestMvnEoU0t8M/.FeatureDatasetFunctionsSuite3368650701017242254.gtf.crc
/tmp/adamTestMvnEoU0t8M/bqsr1.sam181344648186212913.sam
/tmp/adamTestMvnEoU0t8M/TempSuite5898318601170580401.adam
/tmp/adamTestMvnEoU0t8M/TempSuite5898318601170580401.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5898318601170580401.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/TempSuite5898318601170580401.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite5898318601170580401.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite5898318601170580401.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5898318601170580401.adam/._partitionMap.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5898318601170580401.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5898318601170580401.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite5898318601170580401.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5898318601170580401.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/TempSuite5898318601170580401.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5898318601170580401.adam/_partitionMap.avro
/tmp/adamTestMvnEoU0t8M/TempSuite5898318601170580401.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite5898318601170580401.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5898318601170580401.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite5898318601170580401.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite5898318601170580401.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5898318601170580401.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5898318601170580401.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5898318601170580401.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite5898318601170580401.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5898318601170580401.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite2020947198223394989.adam
/tmp/adamTestMvnEoU0t8M/TempSuite2020947198223394989.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2020947198223394989.adam/_header
/tmp/adamTestMvnEoU0t8M/TempSuite2020947198223394989.adam/part-00000-91ef8b0d-a255-44d8-8f29-e894d870d641-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite2020947198223394989.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite2020947198223394989.adam/.part-00000-91ef8b0d-a255-44d8-8f29-e894d870d641-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2020947198223394989.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2020947198223394989.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2020947198223394989.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite7193589591146314787
/tmp/adamTestMvnEoU0t8M/TempSuite4632968793565495884
/tmp/adamTestMvnEoU0t8M/.TempSuite2366759285294136383.bam.crc
/tmp/adamTestMvnEoU0t8M/.TempSuite4632968793565495884.bam.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8971111805182524326.adam
/tmp/adamTestMvnEoU0t8M/TempSuite8971111805182524326.adam/._partitionedByStartPos.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8971111805182524326.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8971111805182524326.adam/referenceName=13
/tmp/adamTestMvnEoU0t8M/TempSuite8971111805182524326.adam/referenceName=13/positionBin=0
/tmp/adamTestMvnEoU0t8M/TempSuite8971111805182524326.adam/referenceName=13/positionBin=0/part-00000-7ee3514e-05c4-4757-b424-80de29802cdc.c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite8971111805182524326.adam/referenceName=13/positionBin=0/.part-00000-7ee3514e-05c4-4757-b424-80de29802cdc.c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8971111805182524326.adam/_header
/tmp/adamTestMvnEoU0t8M/TempSuite8971111805182524326.adam/_partitionedByStartPos
/tmp/adamTestMvnEoU0t8M/TempSuite8971111805182524326.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite8971111805182524326.adam/referenceName=2
/tmp/adamTestMvnEoU0t8M/TempSuite8971111805182524326.adam/referenceName=2/positionBin=0
/tmp/adamTestMvnEoU0t8M/TempSuite8971111805182524326.adam/referenceName=2/positionBin=0/part-00000-7ee3514e-05c4-4757-b424-80de29802cdc.c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite8971111805182524326.adam/referenceName=2/positionBin=0/.part-00000-7ee3514e-05c4-4757-b424-80de29802cdc.c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8971111805182524326.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8971111805182524326.adam/referenceName=1
/tmp/adamTestMvnEoU0t8M/TempSuite8971111805182524326.adam/referenceName=1/positionBin=0
/tmp/adamTestMvnEoU0t8M/TempSuite8971111805182524326.adam/referenceName=1/positionBin=0/part-00000-7ee3514e-05c4-4757-b424-80de29802cdc.c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite8971111805182524326.adam/referenceName=1/positionBin=0/.part-00000-7ee3514e-05c4-4757-b424-80de29802cdc.c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8971111805182524326.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8971111805182524326.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite4552783312657237697
/tmp/adamTestMvnEoU0t8M/hg19.chrM.2bit3169394577427334086.chrM.2bit
/tmp/adamTestMvnEoU0t8M/small.vcf4219707919973651542.vcf
/tmp/adamTestMvnEoU0t8M/1557957536697-0
/tmp/adamTestMvnEoU0t8M/1557957536697-0/contigs.fa
/tmp/adamTestMvnEoU0t8M/1557957536697-0/contigs.fa/part-00000
/tmp/adamTestMvnEoU0t8M/1557957536697-0/contigs.fa/_SUCCESS
/tmp/adamTestMvnEoU0t8M/1557957536697-0/contigs.fa/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/1557957536697-0/contigs.fa/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/1557957536697-0/contigs.adam
/tmp/adamTestMvnEoU0t8M/1557957536697-0/contigs.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/1557957536697-0/contigs.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/1557957536697-0/contigs.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/1557957536697-0/contigs.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/1557957536697-0/contigs.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/1557957536697-0/contigs.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/1557957536697-0/contigs.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/1557957536697-0/contigs.adam/_metadata
/tmp/adamTestMvnEoU0t8M/1557957536697-0/contigs.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/1557957536697-0/contigs.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite2280311670300359848.bam
/tmp/adamTestMvnEoU0t8M/TempSuite2280311670300359848.bam/part-r-00000.bam
/tmp/adamTestMvnEoU0t8M/TempSuite2280311670300359848.bam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite2280311670300359848.bam/.part-r-00000.bam.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2280311670300359848.bam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6483592982700562398
/tmp/adamTestMvnEoU0t8M/TempSuite5281866886925548889
/tmp/adamTestMvnEoU0t8M/TempSuite2173671205212564154
/tmp/adamTestMvnEoU0t8M/TempSuite6563083365729064506_2.fq
/tmp/adamTestMvnEoU0t8M/chr20.250k.fa.gz8592237364543327998.250k.fa.gz
/tmp/adamTestMvnEoU0t8M/TempSuite4552783312657237697.fq
/tmp/adamTestMvnEoU0t8M/TempSuite4552783312657237697.fq/part-00000
/tmp/adamTestMvnEoU0t8M/TempSuite4552783312657237697.fq/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite4552783312657237697.fq/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4552783312657237697.fq/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1437825839866799024
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3410308094818245394
/tmp/adamTestMvnEoU0t8M/132635576121304708
/tmp/adamTestMvnEoU0t8M/132635576121304708/.ordered.sam.crc
/tmp/adamTestMvnEoU0t8M/132635576121304708/ordered.sam
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite8543299126102489560.bed
/tmp/adamTestMvnEoU0t8M/TempSuite7798710522723630865.bed
/tmp/adamTestMvnEoU0t8M/TempSuite7798710522723630865.bed/part-00000
/tmp/adamTestMvnEoU0t8M/TempSuite7798710522723630865.bed/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite7798710522723630865.bed/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7798710522723630865.bed/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7185099737704622476
/tmp/adamTestMvnEoU0t8M/TempSuite2260939365165951605.adam
/tmp/adamTestMvnEoU0t8M/TempSuite2260939365165951605.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2260939365165951605.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite2260939365165951605.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2260939365165951605.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2260939365165951605.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite2260939365165951605.adam/_header
/tmp/adamTestMvnEoU0t8M/TempSuite2260939365165951605.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite2260939365165951605.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2260939365165951605.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2260939365165951605.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite2260939365165951605.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2260939365165951605.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/2797088786450915680
/tmp/adamTestMvnEoU0t8M/2797088786450915680/test.fa
/tmp/adamTestMvnEoU0t8M/2797088786450915680/.test.fa.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite5383070667771871414
/tmp/adamTestMvnEoU0t8M/TempSuite2387741486779947129.bed
/tmp/adamTestMvnEoU0t8M/TempSuite2387741486779947129.bed/part-00002
/tmp/adamTestMvnEoU0t8M/TempSuite2387741486779947129.bed/.part-00003.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2387741486779947129.bed/part-00000
/tmp/adamTestMvnEoU0t8M/TempSuite2387741486779947129.bed/part-00003
/tmp/adamTestMvnEoU0t8M/TempSuite2387741486779947129.bed/.part-00002.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2387741486779947129.bed/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite2387741486779947129.bed/part-00001
/tmp/adamTestMvnEoU0t8M/TempSuite2387741486779947129.bed/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2387741486779947129.bed/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2387741486779947129.bed/.part-00001.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5316434547967913019.bed
/tmp/adamTestMvnEoU0t8M/TempSuite5316434547967913019.bed/part-00000
/tmp/adamTestMvnEoU0t8M/TempSuite5316434547967913019.bed/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite5316434547967913019.bed/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5316434547967913019.bed/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/1979644585976392761
/tmp/adamTestMvnEoU0t8M/1979644585976392761/.ordered.sam.crc
/tmp/adamTestMvnEoU0t8M/1979644585976392761/ordered.sam
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite1923709467806889691
/tmp/adamTestMvnEoU0t8M/TempSuite155180547207412223.fa
/tmp/adamTestMvnEoU0t8M/TempSuite155180547207412223.fa/part-00000
/tmp/adamTestMvnEoU0t8M/TempSuite155180547207412223.fa/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite155180547207412223.fa/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/TempSuite155180547207412223.fa/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/ordered.sam7630725586234566291.sam
/tmp/adamTestMvnEoU0t8M/TempSuite1229654300177179960.adam
/tmp/adamTestMvnEoU0t8M/TempSuite1229654300177179960.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/TempSuite1229654300177179960.adam/.part-00001-540f6e10-7921-4011-9c14-636f2fb5cdde-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1229654300177179960.adam/part-00001-540f6e10-7921-4011-9c14-636f2fb5cdde-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite1229654300177179960.adam/.part-00002-540f6e10-7921-4011-9c14-636f2fb5cdde-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1229654300177179960.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/TempSuite1229654300177179960.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1229654300177179960.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite1229654300177179960.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1229654300177179960.adam/part-00000-540f6e10-7921-4011-9c14-636f2fb5cdde-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite1229654300177179960.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1229654300177179960.adam/part-00002-540f6e10-7921-4011-9c14-636f2fb5cdde-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite1229654300177179960.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1229654300177179960.adam/.part-00000-540f6e10-7921-4011-9c14-636f2fb5cdde-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1229654300177179960.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3231233770752078762.gff3
/tmp/adamTestMvnEoU0t8M/TempSuite2110238590408500258
/tmp/adamTestMvnEoU0t8M/reads7267640015829247526
/tmp/adamTestMvnEoU0t8M/reads7267640015829247526/reads2.fq
/tmp/adamTestMvnEoU0t8M/reads7267640015829247526/reads2.fq/part-00000
/tmp/adamTestMvnEoU0t8M/reads7267640015829247526/reads2.fq/_SUCCESS
/tmp/adamTestMvnEoU0t8M/reads7267640015829247526/reads2.fq/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/reads7267640015829247526/reads2.fq/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/reads7267640015829247526/reads1.fq
/tmp/adamTestMvnEoU0t8M/reads7267640015829247526/reads1.fq/part-00000
/tmp/adamTestMvnEoU0t8M/reads7267640015829247526/reads1.fq/_SUCCESS
/tmp/adamTestMvnEoU0t8M/reads7267640015829247526/reads1.fq/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/reads7267640015829247526/reads1.fq/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1753553702659849140
/tmp/adamTestMvnEoU0t8M/TempSuite6523572692825792817.adam
/tmp/adamTestMvnEoU0t8M/TempSuite6523572692825792817.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6523572692825792817.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite6523572692825792817.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite6523572692825792817.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6523572692825792817.adam/._samples.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6523572692825792817.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6523572692825792817.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6523572692825792817.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite6523572692825792817.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6523572692825792817.adam/_samples.avro
/tmp/adamTestMvnEoU0t8M/TempSuite6523572692825792817.adam/_header
/tmp/adamTestMvnEoU0t8M/TempSuite6523572692825792817.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite6523572692825792817.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6523572692825792817.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite6523572692825792817.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite6523572692825792817.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6523572692825792817.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6523572692825792817.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite6523572692825792817.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6523572692825792817.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/1557957549815-0
/tmp/adamTestMvnEoU0t8M/1557957549815-0/bqsr1-r1.fq
/tmp/adamTestMvnEoU0t8M/1557957549815-0/bqsr1-r1.fq/part-00000
/tmp/adamTestMvnEoU0t8M/1557957549815-0/bqsr1-r1.fq/_SUCCESS
/tmp/adamTestMvnEoU0t8M/1557957549815-0/bqsr1-r1.fq/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/1557957549815-0/bqsr1-r1.fq/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/1557957549815-0/bqsr1-r2.fq
/tmp/adamTestMvnEoU0t8M/1557957549815-0/bqsr1-r2.fq/part-00000
/tmp/adamTestMvnEoU0t8M/1557957549815-0/bqsr1-r2.fq/_SUCCESS
/tmp/adamTestMvnEoU0t8M/1557957549815-0/bqsr1-r2.fq/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/1557957549815-0/bqsr1-r2.fq/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1057248652727705257.fq
/tmp/adamTestMvnEoU0t8M/TempSuite1057248652727705257.fq/part-00000
/tmp/adamTestMvnEoU0t8M/TempSuite1057248652727705257.fq/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite1057248652727705257.fq/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1057248652727705257.fq/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite155180547207412223
/tmp/adamTestMvnEoU0t8M/TempSuite54150581273564631.adam
/tmp/adamTestMvnEoU0t8M/TempSuite54150581273564631.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite54150581273564631.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite54150581273564631.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite54150581273564631.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/TempSuite54150581273564631.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite54150581273564631.adam/_header
/tmp/adamTestMvnEoU0t8M/TempSuite54150581273564631.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite54150581273564631.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite54150581273564631.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite54150581273564631.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite54150581273564631.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite54150581273564631.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite2330606400490698547.adam
/tmp/adamTestMvnEoU0t8M/TempSuite2330606400490698547.adam/.part-00000-acbb4ba0-f421-43c5-8873-efe9769609a8-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2330606400490698547.adam/part-00000-acbb4ba0-f421-43c5-8873-efe9769609a8-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite2330606400490698547.adam/._samples.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2330606400490698547.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2330606400490698547.adam/_samples.avro
/tmp/adamTestMvnEoU0t8M/TempSuite2330606400490698547.adam/_header
/tmp/adamTestMvnEoU0t8M/TempSuite2330606400490698547.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite2330606400490698547.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2330606400490698547.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2330606400490698547.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite400319022251690820.bed
/tmp/adamTestMvnEoU0t8M/TempSuite400319022251690820.bed/part-00000
/tmp/adamTestMvnEoU0t8M/TempSuite400319022251690820.bed/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite400319022251690820.bed/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/TempSuite400319022251690820.bed/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5828307598403342018
/tmp/adamTestMvnEoU0t8M/TempSuite8342025497110158737
/tmp/adamTestMvnEoU0t8M/TempSuite4647215045351228089.bed
/tmp/adamTestMvnEoU0t8M/TempSuite4647215045351228089.bed/part-00002
/tmp/adamTestMvnEoU0t8M/TempSuite4647215045351228089.bed/.part-00003.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4647215045351228089.bed/part-00000
/tmp/adamTestMvnEoU0t8M/TempSuite4647215045351228089.bed/part-00003
/tmp/adamTestMvnEoU0t8M/TempSuite4647215045351228089.bed/.part-00002.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4647215045351228089.bed/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite4647215045351228089.bed/part-00001
/tmp/adamTestMvnEoU0t8M/TempSuite4647215045351228089.bed/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4647215045351228089.bed/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4647215045351228089.bed/.part-00001.crc
/tmp/adamTestMvnEoU0t8M/3120282353193641867
/tmp/adamTestMvnEoU0t8M/3120282353193641867/.sorted.sam.crc
/tmp/adamTestMvnEoU0t8M/3120282353193641867/sorted.sam
/tmp/adamTestMvnEoU0t8M/TempSuite6628178332464447581
/tmp/adamTestMvnEoU0t8M/TempSuite7761588994697104753
/tmp/adamTestMvnEoU0t8M/TempSuite3419749464008675421.sam
/tmp/adamTestMvnEoU0t8M/TempSuite3419749464008675421.sam/part-r-00000.sam
/tmp/adamTestMvnEoU0t8M/TempSuite3419749464008675421.sam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite3419749464008675421.sam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3419749464008675421.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8572025794122880220.bed
/tmp/adamTestMvnEoU0t8M/TempSuite8572025794122880220.bed/part-00000
/tmp/adamTestMvnEoU0t8M/TempSuite8572025794122880220.bed/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite8572025794122880220.bed/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8572025794122880220.bed/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4716573701655961365
/tmp/adamTestMvnEoU0t8M/TempSuite5989502162987793220.adam
/tmp/adamTestMvnEoU0t8M/TempSuite5989502162987793220.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5989502162987793220.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/TempSuite5989502162987793220.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite5989502162987793220.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5989502162987793220.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite5989502162987793220.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/TempSuite5989502162987793220.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5989502162987793220.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite5989502162987793220.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5989502162987793220.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5989502162987793220.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5989502162987793220.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite5989502162987793220.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5989502162987793220.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/1557957328401-0
/tmp/adamTestMvnEoU0t8M/1557957328401-0/bamReads.adam
/tmp/adamTestMvnEoU0t8M/1557957328401-0/bamReads.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/1557957328401-0/bamReads.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/1557957328401-0/bamReads.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/1557957328401-0/bamReads.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/1557957328401-0/bamReads.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/1557957328401-0/bamReads.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/1557957328401-0/bamReads.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/1557957328401-0/bamReads.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/1557957328401-0/bamReads.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/1557957328401-0/bamReads.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/1557957328401-0/bamReads.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/1557957328401-0/bamReads.adam/_metadata
/tmp/adamTestMvnEoU0t8M/1557957328401-0/bamReads.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/1557957328401-0/bamReads.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/6425295248370347439
/tmp/adamTestMvnEoU0t8M/6425295248370347439/ctg.adam
/tmp/adamTestMvnEoU0t8M/6425295248370347439/ctg.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/6425295248370347439/ctg.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/6425295248370347439/ctg.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/6425295248370347439/ctg.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/6425295248370347439/ctg.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/6425295248370347439/ctg.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/6425295248370347439/ctg.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/6425295248370347439/ctg.adam/_metadata
/tmp/adamTestMvnEoU0t8M/6425295248370347439/ctg.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/6425295248370347439/ctg.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite5410123204620799163.adam
/tmp/adamTestMvnEoU0t8M/TempSuite5410123204620799163.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5410123204620799163.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite5410123204620799163.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite5410123204620799163.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5410123204620799163.adam/._samples.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5410123204620799163.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5410123204620799163.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5410123204620799163.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite5410123204620799163.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5410123204620799163.adam/_samples.avro
/tmp/adamTestMvnEoU0t8M/TempSuite5410123204620799163.adam/_header
/tmp/adamTestMvnEoU0t8M/TempSuite5410123204620799163.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite5410123204620799163.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5410123204620799163.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite5410123204620799163.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite5410123204620799163.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5410123204620799163.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5410123204620799163.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite5410123204620799163.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5410123204620799163.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/4439985847642543587
/tmp/adamTestMvnEoU0t8M/4439985847642543587/contigs.adam
/tmp/adamTestMvnEoU0t8M/4439985847642543587/contigs.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/4439985847642543587/contigs.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/4439985847642543587/contigs.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/4439985847642543587/contigs.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/4439985847642543587/contigs.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/4439985847642543587/contigs.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/4439985847642543587/contigs.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/4439985847642543587/contigs.adam/_metadata
/tmp/adamTestMvnEoU0t8M/4439985847642543587/contigs.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/4439985847642543587/contigs.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite8375160347013598720.bed
/tmp/adamTestMvnEoU0t8M/TempSuite8375160347013598720.bed/part-00000
/tmp/adamTestMvnEoU0t8M/TempSuite8375160347013598720.bed/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite8375160347013598720.bed/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8375160347013598720.bed/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1792177785016642931
/tmp/adamTestMvnEoU0t8M/6748158314929259896
/tmp/adamTestMvnEoU0t8M/6748158314929259896/predicate.3.adam
/tmp/adamTestMvnEoU0t8M/6748158314929259896/predicate.3.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/6748158314929259896/predicate.3.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/6748158314929259896/predicate.3.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/6748158314929259896/predicate.3.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/6748158314929259896/predicate.3.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/6748158314929259896/predicate.3.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/6748158314929259896/predicate.3.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/6748158314929259896/predicate.3.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/6748158314929259896/predicate.3.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/6748158314929259896/predicate.3.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/6748158314929259896/predicate.3.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/6748158314929259896/predicate.3.adam/_metadata
/tmp/adamTestMvnEoU0t8M/6748158314929259896/predicate.3.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/6748158314929259896/predicate.3.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite788934333515945794.adam
/tmp/adamTestMvnEoU0t8M/TempSuite788934333515945794.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/TempSuite788934333515945794.adam/part-00000-04850a6f-6d9b-42e0-8b14-1fd8cf26ec8c-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite788934333515945794.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/TempSuite788934333515945794.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite788934333515945794.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite788934333515945794.adam/.part-00000-04850a6f-6d9b-42e0-8b14-1fd8cf26ec8c-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite788934333515945794.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite788934333515945794.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite788934333515945794.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite788934333515945794.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite2366759285294136383.bam
/tmp/adamTestMvnEoU0t8M/TempSuite3883993467619378952.adam
/tmp/adamTestMvnEoU0t8M/TempSuite3883993467619378952.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3883993467619378952.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite3883993467619378952.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite3883993467619378952.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3883993467619378952.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3883993467619378952.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite3883993467619378952.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3883993467619378952.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite3883993467619378952.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3883993467619378952.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite3883993467619378952.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite3883993467619378952.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3883993467619378952.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3883993467619378952.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite3883993467619378952.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3883993467619378952.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/3964556433359724971
/tmp/adamTestMvnEoU0t8M/3964556433359724971/sorted.vcf
/tmp/adamTestMvnEoU0t8M/3964556433359724971/.sorted.vcf.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4866811095383964518_1.fq
/tmp/adamTestMvnEoU0t8M/TempSuite5813479585730128491
/tmp/adamTestMvnEoU0t8M/5390926680045442117
/tmp/adamTestMvnEoU0t8M/5390926680045442117/.unordered.sam.crc
/tmp/adamTestMvnEoU0t8M/5390926680045442117/unordered.sam
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3273017567497612558.bed
/tmp/adamTestMvnEoU0t8M/TempSuite8647796544703020103
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite5821320934267741781
/tmp/adamTestMvnEoU0t8M/2676154012214540927
/tmp/adamTestMvnEoU0t8M/2676154012214540927/ctg.adam
/tmp/adamTestMvnEoU0t8M/2676154012214540927/ctg.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/2676154012214540927/ctg.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/2676154012214540927/ctg.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/2676154012214540927/ctg.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/2676154012214540927/ctg.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/2676154012214540927/ctg.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/2676154012214540927/ctg.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/2676154012214540927/ctg.adam/_metadata
/tmp/adamTestMvnEoU0t8M/2676154012214540927/ctg.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/2676154012214540927/ctg.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite1403554893931119484.adam
/tmp/adamTestMvnEoU0t8M/TempSuite1403554893931119484.adam/.part-00000-ed56846c-6e3b-4244-b8e0-7d3d39c101a7-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1403554893931119484.adam/._samples.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1403554893931119484.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1403554893931119484.adam/_samples.avro
/tmp/adamTestMvnEoU0t8M/TempSuite1403554893931119484.adam/_header
/tmp/adamTestMvnEoU0t8M/TempSuite1403554893931119484.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite1403554893931119484.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1403554893931119484.adam/part-00000-ed56846c-6e3b-4244-b8e0-7d3d39c101a7-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite1403554893931119484.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1403554893931119484.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite9021830102239102101.fa
/tmp/adamTestMvnEoU0t8M/TempSuite9021830102239102101.fa/part-00000
/tmp/adamTestMvnEoU0t8M/TempSuite9021830102239102101.fa/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite9021830102239102101.fa/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/TempSuite9021830102239102101.fa/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2895106857166908267.adam
/tmp/adamTestMvnEoU0t8M/TempSuite2895106857166908267.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2895106857166908267.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite2895106857166908267.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite2895106857166908267.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2895106857166908267.adam/._samples.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2895106857166908267.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2895106857166908267.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2895106857166908267.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite2895106857166908267.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2895106857166908267.adam/_samples.avro
/tmp/adamTestMvnEoU0t8M/TempSuite2895106857166908267.adam/_header
/tmp/adamTestMvnEoU0t8M/TempSuite2895106857166908267.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite2895106857166908267.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2895106857166908267.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite2895106857166908267.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite2895106857166908267.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2895106857166908267.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2895106857166908267.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite2895106857166908267.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2895106857166908267.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/1755697148468953951
/tmp/adamTestMvnEoU0t8M/1755697148468953951/.ordered.sam.crc
/tmp/adamTestMvnEoU0t8M/1755697148468953951/ordered.sam
/tmp/adamTestMvnEoU0t8M/TempSuite7713652748068626668.adam
/tmp/adamTestMvnEoU0t8M/TempSuite7713652748068626668.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7713652748068626668.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/TempSuite7713652748068626668.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite7713652748068626668.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite7713652748068626668.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7713652748068626668.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7713652748068626668.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite7713652748068626668.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7713652748068626668.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/TempSuite7713652748068626668.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7713652748068626668.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite7713652748068626668.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7713652748068626668.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite7713652748068626668.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite7713652748068626668.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7713652748068626668.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7713652748068626668.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7713652748068626668.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite7713652748068626668.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7713652748068626668.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/3143420211411989067
/tmp/adamTestMvnEoU0t8M/3143420211411989067/binned.adam
/tmp/adamTestMvnEoU0t8M/3143420211411989067/binned.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/3143420211411989067/binned.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/3143420211411989067/binned.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/3143420211411989067/binned.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/3143420211411989067/binned.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/3143420211411989067/binned.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/3143420211411989067/binned.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/3143420211411989067/binned.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/3143420211411989067/binned.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/3143420211411989067/binned.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/3143420211411989067/binned.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/3143420211411989067/binned.adam/_metadata
/tmp/adamTestMvnEoU0t8M/3143420211411989067/binned.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/3143420211411989067/binned.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite6938251331068047877.adam
/tmp/adamTestMvnEoU0t8M/TempSuite6938251331068047877.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/TempSuite6938251331068047877.adam/.part-00000-4975c6f4-4101-4abb-8a6f-463aa7342391-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6938251331068047877.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/TempSuite6938251331068047877.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6938251331068047877.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite6938251331068047877.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6938251331068047877.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6938251331068047877.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6938251331068047877.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite6938251331068047877.adam/part-00000-4975c6f4-4101-4abb-8a6f-463aa7342391-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite7605119870582083339.adam
/tmp/adamTestMvnEoU0t8M/TempSuite7605119870582083339.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7605119870582083339.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/TempSuite7605119870582083339.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite7605119870582083339.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7605119870582083339.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite7605119870582083339.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/TempSuite7605119870582083339.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7605119870582083339.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite7605119870582083339.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7605119870582083339.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7605119870582083339.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7605119870582083339.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite7605119870582083339.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7605119870582083339.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite6667767654620098642
/tmp/adamTestMvnEoU0t8M/TempSuite25047860406153071
/tmp/adamTestMvnEoU0t8M/gencode.v7.annotation.trunc10.bed6839117100485411783.v7.annotation.trunc10.bed
/tmp/adamTestMvnEoU0t8M/TempSuite6988963457805904510
/tmp/adamTestMvnEoU0t8M/TempSuite8487827448126437580.adam
/tmp/adamTestMvnEoU0t8M/TempSuite8487827448126437580.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8487827448126437580.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite8487827448126437580.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite8487827448126437580.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8487827448126437580.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8487827448126437580.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite8487827448126437580.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8487827448126437580.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite8487827448126437580.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8487827448126437580.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite8487827448126437580.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite8487827448126437580.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8487827448126437580.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8487827448126437580.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite8487827448126437580.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8487827448126437580.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite4545431884777132851.fa
/tmp/adamTestMvnEoU0t8M/TempSuite4545431884777132851.fa/part-00000
/tmp/adamTestMvnEoU0t8M/TempSuite4545431884777132851.fa/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite4545431884777132851.fa/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4545431884777132851.fa/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/4757392997998142182
/tmp/adamTestMvnEoU0t8M/4757392997998142182/..gff3.crc
/tmp/adamTestMvnEoU0t8M/4757392997998142182/.gff3
/tmp/adamTestMvnEoU0t8M/TempSuite7823504943274276326.bed
/tmp/adamTestMvnEoU0t8M/TempSuite7823504943274276326.bed/part-00002
/tmp/adamTestMvnEoU0t8M/TempSuite7823504943274276326.bed/.part-00003.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7823504943274276326.bed/part-00000
/tmp/adamTestMvnEoU0t8M/TempSuite7823504943274276326.bed/part-00003
/tmp/adamTestMvnEoU0t8M/TempSuite7823504943274276326.bed/.part-00002.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7823504943274276326.bed/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite7823504943274276326.bed/part-00001
/tmp/adamTestMvnEoU0t8M/TempSuite7823504943274276326.bed/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7823504943274276326.bed/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7823504943274276326.bed/.part-00001.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite4878694670944163181
/tmp/adamTestMvnEoU0t8M/TempSuite6335159097407803377
/tmp/adamTestMvnEoU0t8M/TempSuite7713652748068626668
/tmp/adamTestMvnEoU0t8M/TempSuite6723790623064849642
/tmp/adamTestMvnEoU0t8M/TempSuite5093744458437221197.fa
/tmp/adamTestMvnEoU0t8M/TempSuite5093744458437221197.fa/part-00000
/tmp/adamTestMvnEoU0t8M/TempSuite5093744458437221197.fa/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite5093744458437221197.fa/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5093744458437221197.fa/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4248151545947757190.adam
/tmp/adamTestMvnEoU0t8M/TempSuite4248151545947757190.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4248151545947757190.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite4248151545947757190.adam/._samples.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4248151545947757190.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4248151545947757190.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4248151545947757190.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite4248151545947757190.adam/_samples.avro
/tmp/adamTestMvnEoU0t8M/TempSuite4248151545947757190.adam/_header
/tmp/adamTestMvnEoU0t8M/TempSuite4248151545947757190.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite4248151545947757190.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4248151545947757190.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4248151545947757190.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite4248151545947757190.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4248151545947757190.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite4135561978591628625
/tmp/adamTestMvnEoU0t8M/TempSuite1148524649436906698.adam
/tmp/adamTestMvnEoU0t8M/TempSuite1148524649436906698.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1148524649436906698.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite1148524649436906698.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1148524649436906698.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1148524649436906698.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite1148524649436906698.adam/_header
/tmp/adamTestMvnEoU0t8M/TempSuite1148524649436906698.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite1148524649436906698.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1148524649436906698.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1148524649436906698.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite1148524649436906698.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1148524649436906698.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/5523424829072034620
/tmp/adamTestMvnEoU0t8M/5523424829072034620/binned.adam
/tmp/adamTestMvnEoU0t8M/5523424829072034620/binned.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/5523424829072034620/binned.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/5523424829072034620/binned.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/5523424829072034620/binned.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/5523424829072034620/binned.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/5523424829072034620/binned.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/5523424829072034620/binned.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/5523424829072034620/binned.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/5523424829072034620/binned.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/5523424829072034620/binned.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/5523424829072034620/binned.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/5523424829072034620/binned.adam/_metadata
/tmp/adamTestMvnEoU0t8M/5523424829072034620/binned.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/5523424829072034620/binned.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite4559106432020423036.adam
/tmp/adamTestMvnEoU0t8M/TempSuite4559106432020423036.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4559106432020423036.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite4559106432020423036.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4559106432020423036.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4559106432020423036.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite4559106432020423036.adam/_header
/tmp/adamTestMvnEoU0t8M/TempSuite4559106432020423036.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite4559106432020423036.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4559106432020423036.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4559106432020423036.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite4559106432020423036.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4559106432020423036.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6426323713839964078
/tmp/adamTestMvnEoU0t8M/TempSuite1830050038291123371.adam
/tmp/adamTestMvnEoU0t8M/TempSuite1830050038291123371.adam/.part-00000-dfe7df1f-762e-4c7b-8499-a673d6191434-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1830050038291123371.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/TempSuite1830050038291123371.adam/.part-00001-dfe7df1f-762e-4c7b-8499-a673d6191434-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1830050038291123371.adam/part-00001-dfe7df1f-762e-4c7b-8499-a673d6191434-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite1830050038291123371.adam/part-00000-dfe7df1f-762e-4c7b-8499-a673d6191434-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite1830050038291123371.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/TempSuite1830050038291123371.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1830050038291123371.adam/.part-00002-dfe7df1f-762e-4c7b-8499-a673d6191434-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1830050038291123371.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite1830050038291123371.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1830050038291123371.adam/part-00002-dfe7df1f-762e-4c7b-8499-a673d6191434-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite1830050038291123371.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1830050038291123371.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1830050038291123371.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite1541228327283081784.adam
/tmp/adamTestMvnEoU0t8M/TempSuite1541228327283081784.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1541228327283081784.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/TempSuite1541228327283081784.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite1541228327283081784.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1541228327283081784.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite1541228327283081784.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/TempSuite1541228327283081784.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1541228327283081784.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite1541228327283081784.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1541228327283081784.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1541228327283081784.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1541228327283081784.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite1541228327283081784.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1541228327283081784.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite3480706448844337619.adam
/tmp/adamTestMvnEoU0t8M/TempSuite3480706448844337619.adam/._samples.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3480706448844337619.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3480706448844337619.adam/_samples.avro
/tmp/adamTestMvnEoU0t8M/TempSuite3480706448844337619.adam/_header
/tmp/adamTestMvnEoU0t8M/TempSuite3480706448844337619.adam/.part-00000-0a97f508-6462-42df-9083-2ca79ab87c90-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3480706448844337619.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite3480706448844337619.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3480706448844337619.adam/part-00000-0a97f508-6462-42df-9083-2ca79ab87c90-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite3480706448844337619.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3480706448844337619.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/.FeatureDatasetFunctionsSuite5561287105705386091.bed.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7454617315170210108.adam
/tmp/adamTestMvnEoU0t8M/TempSuite7454617315170210108.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7454617315170210108.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite7454617315170210108.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite7454617315170210108.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7454617315170210108.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7454617315170210108.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite7454617315170210108.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7454617315170210108.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite7454617315170210108.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7454617315170210108.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite7454617315170210108.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite7454617315170210108.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7454617315170210108.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7454617315170210108.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite7454617315170210108.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7454617315170210108.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/1058338100200666673
/tmp/adamTestMvnEoU0t8M/1058338100200666673/.sorted-variants.vcf.crc
/tmp/adamTestMvnEoU0t8M/1058338100200666673/sorted-variants.vcf
/tmp/adamTestMvnEoU0t8M/TempSuite4421803340487266181
/tmp/adamTestMvnEoU0t8M/.TempSuite6980317967086837937_2.fq.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6505567299914607958.adam
/tmp/adamTestMvnEoU0t8M/TempSuite6505567299914607958.adam/.part-00000-fa07816d-e6cc-481d-af1d-47c8686b9413-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6505567299914607958.adam/part-00002-fa07816d-e6cc-481d-af1d-47c8686b9413-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite6505567299914607958.adam/.part-00002-fa07816d-e6cc-481d-af1d-47c8686b9413-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6505567299914607958.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6505567299914607958.adam/part-00001-fa07816d-e6cc-481d-af1d-47c8686b9413-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite6505567299914607958.adam/_header
/tmp/adamTestMvnEoU0t8M/TempSuite6505567299914607958.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite6505567299914607958.adam/part-00000-fa07816d-e6cc-481d-af1d-47c8686b9413-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite6505567299914607958.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6505567299914607958.adam/.part-00001-fa07816d-e6cc-481d-af1d-47c8686b9413-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6505567299914607958.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6505567299914607958.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite6086190263361812485.bed
/tmp/adamTestMvnEoU0t8M/TempSuite6086190263361812485.bed/part-00000
/tmp/adamTestMvnEoU0t8M/TempSuite6086190263361812485.bed/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite6086190263361812485.bed/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6086190263361812485.bed/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8879195099579897517
/tmp/adamTestMvnEoU0t8M/TempSuite5761803869780760657.adam
/tmp/adamTestMvnEoU0t8M/TempSuite5761803869780760657.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5761803869780760657.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite5761803869780760657.adam/._samples.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5761803869780760657.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5761803869780760657.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5761803869780760657.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite5761803869780760657.adam/_samples.avro
/tmp/adamTestMvnEoU0t8M/TempSuite5761803869780760657.adam/_header
/tmp/adamTestMvnEoU0t8M/TempSuite5761803869780760657.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite5761803869780760657.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5761803869780760657.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5761803869780760657.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite5761803869780760657.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5761803869780760657.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite6314483433926602850.bed
/tmp/adamTestMvnEoU0t8M/TempSuite6314483433926602850.bed/part-00000
/tmp/adamTestMvnEoU0t8M/TempSuite6314483433926602850.bed/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite6314483433926602850.bed/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6314483433926602850.bed/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite817242398175961378.fa
/tmp/adamTestMvnEoU0t8M/TempSuite817242398175961378.fa/part-00000
/tmp/adamTestMvnEoU0t8M/TempSuite817242398175961378.fa/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite817242398175961378.fa/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/TempSuite817242398175961378.fa/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5039260302671872587.sam
/tmp/adamTestMvnEoU0t8M/TempSuite5039260302671872587.sam/part-r-00000.sam
/tmp/adamTestMvnEoU0t8M/TempSuite5039260302671872587.sam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite5039260302671872587.sam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5039260302671872587.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnEoU0t8M/small.vcf7847380410224280492.vcf
/tmp/adamTestMvnEoU0t8M/TempSuite6367495703745529491.adam
/tmp/adamTestMvnEoU0t8M/TempSuite6367495703745529491.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/TempSuite6367495703745529491.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/TempSuite6367495703745529491.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6367495703745529491.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite6367495703745529491.adam/.part-00000-ba5d08a9-030b-4614-9670-1a6f629f3f1a-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6367495703745529491.adam/part-00000-ba5d08a9-030b-4614-9670-1a6f629f3f1a-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite6367495703745529491.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6367495703745529491.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6367495703745529491.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6367495703745529491.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/253448646125573071
/tmp/adamTestMvnEoU0t8M/TempSuite6613772113670221389.adam
/tmp/adamTestMvnEoU0t8M/TempSuite6613772113670221389.adam/part-00000-c5d3e53f-d618-437e-933f-6d030694dea1-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite6613772113670221389.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/TempSuite6613772113670221389.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/TempSuite6613772113670221389.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6613772113670221389.adam/.part-00000-c5d3e53f-d618-437e-933f-6d030694dea1-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6613772113670221389.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite6613772113670221389.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6613772113670221389.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6613772113670221389.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6613772113670221389.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite1709815238772478631
/tmp/adamTestMvnEoU0t8M/TempSuite7661956967103918261.adam
/tmp/adamTestMvnEoU0t8M/TempSuite7661956967103918261.adam/._partitionedByStartPos.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7661956967103918261.adam/._samples.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7661956967103918261.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7661956967103918261.adam/_samples.avro
/tmp/adamTestMvnEoU0t8M/TempSuite7661956967103918261.adam/_header
/tmp/adamTestMvnEoU0t8M/TempSuite7661956967103918261.adam/_partitionedByStartPos
/tmp/adamTestMvnEoU0t8M/TempSuite7661956967103918261.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite7661956967103918261.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7661956967103918261.adam/referenceName=1
/tmp/adamTestMvnEoU0t8M/TempSuite7661956967103918261.adam/referenceName=1/positionBin=0
/tmp/adamTestMvnEoU0t8M/TempSuite7661956967103918261.adam/referenceName=1/positionBin=0/part-00000-7c659f31-0255-4a40-8c4b-8afbcfd71a29.c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite7661956967103918261.adam/referenceName=1/positionBin=0/.part-00000-7c659f31-0255-4a40-8c4b-8afbcfd71a29.c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7661956967103918261.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7661956967103918261.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite3041039100394882305.adam
/tmp/adamTestMvnEoU0t8M/TempSuite3041039100394882305.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3041039100394882305.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/TempSuite3041039100394882305.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite3041039100394882305.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3041039100394882305.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite3041039100394882305.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/TempSuite3041039100394882305.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3041039100394882305.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite3041039100394882305.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3041039100394882305.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3041039100394882305.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3041039100394882305.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite3041039100394882305.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3041039100394882305.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite5464250952261223025.adam
/tmp/adamTestMvnEoU0t8M/TempSuite5464250952261223025.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5464250952261223025.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/TempSuite5464250952261223025.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite5464250952261223025.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5464250952261223025.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite5464250952261223025.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/TempSuite5464250952261223025.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5464250952261223025.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite5464250952261223025.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5464250952261223025.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5464250952261223025.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5464250952261223025.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite5464250952261223025.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5464250952261223025.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite1689501930357543052.adam
/tmp/adamTestMvnEoU0t8M/TempSuite1689501930357543052.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1689501930357543052.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite1689501930357543052.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1689501930357543052.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1689501930357543052.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite1689501930357543052.adam/_header
/tmp/adamTestMvnEoU0t8M/TempSuite1689501930357543052.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite1689501930357543052.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1689501930357543052.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1689501930357543052.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite1689501930357543052.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1689501930357543052.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite1313053007724275760.adam
/tmp/adamTestMvnEoU0t8M/TempSuite1313053007724275760.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/TempSuite1313053007724275760.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/TempSuite1313053007724275760.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1313053007724275760.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite1313053007724275760.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1313053007724275760.adam/.part-00000-7a86664f-2f99-43b8-a3b2-9a7804d14212-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1313053007724275760.adam/part-00000-7a86664f-2f99-43b8-a3b2-9a7804d14212-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite1313053007724275760.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1313053007724275760.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1313053007724275760.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/2952261516641373032
/tmp/adamTestMvnEoU0t8M/2952261516641373032/artificial.cram
/tmp/adamTestMvnEoU0t8M/2952261516641373032/.artificial.cram.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2541152970533745345.sam
/tmp/adamTestMvnEoU0t8M/TempSuite6335558184837734842
/tmp/adamTestMvnEoU0t8M/javaAC3274171667416507886
/tmp/adamTestMvnEoU0t8M/javaAC3274171667416507886/testRdd.coverage.adam
/tmp/adamTestMvnEoU0t8M/javaAC3274171667416507886/testRdd.coverage.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/javaAC3274171667416507886/testRdd.coverage.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/javaAC3274171667416507886/testRdd.coverage.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnEoU0t8M/javaAC3274171667416507886/testRdd.coverage.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/javaAC3274171667416507886/testRdd.coverage.adam/._samples.avro.crc
/tmp/adamTestMvnEoU0t8M/javaAC3274171667416507886/testRdd.coverage.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/javaAC3274171667416507886/testRdd.coverage.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/javaAC3274171667416507886/testRdd.coverage.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/javaAC3274171667416507886/testRdd.coverage.adam/_samples.avro
/tmp/adamTestMvnEoU0t8M/javaAC3274171667416507886/testRdd.coverage.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/javaAC3274171667416507886/testRdd.coverage.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/javaAC3274171667416507886/testRdd.coverage.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnEoU0t8M/javaAC3274171667416507886/testRdd.coverage.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnEoU0t8M/javaAC3274171667416507886/testRdd.coverage.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/javaAC3274171667416507886/testRdd.coverage.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/javaAC3274171667416507886/testRdd.coverage.adam/_metadata
/tmp/adamTestMvnEoU0t8M/javaAC3274171667416507886/testRdd.coverage.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/javaAC3274171667416507886/testRdd.coverage.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite6523572692825792817
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite2117711833610041493.gtf
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite2117711833610041493.gtf/part-00002
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite2117711833610041493.gtf/.part-00003.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite2117711833610041493.gtf/part-00000
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite2117711833610041493.gtf/part-00003
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite2117711833610041493.gtf/.part-00002.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite2117711833610041493.gtf/_SUCCESS
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite2117711833610041493.gtf/part-00001
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite2117711833610041493.gtf/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite2117711833610041493.gtf/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite2117711833610041493.gtf/.part-00001.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5688241049704952240
/tmp/adamTestMvnEoU0t8M/TempSuite5201677300291502765.adam
/tmp/adamTestMvnEoU0t8M/TempSuite5201677300291502765.adam/part-00000-e9a1c365-db0c-4265-90db-f19c80a55ca7-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite5201677300291502765.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite5201677300291502765.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5201677300291502765.adam/.part-00000-e9a1c365-db0c-4265-90db-f19c80a55ca7-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5201677300291502765.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5201677300291502765.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite1840658206174257594.gff3
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite1840658206174257594.gff3/part-00002
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite1840658206174257594.gff3/.part-00003.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite1840658206174257594.gff3/part-00000
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite1840658206174257594.gff3/part-00003
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite1840658206174257594.gff3/.part-00002.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite1840658206174257594.gff3/_SUCCESS
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite1840658206174257594.gff3/part-00001
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite1840658206174257594.gff3/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite1840658206174257594.gff3/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite1840658206174257594.gff3/.part-00001.crc
/tmp/adamTestMvnEoU0t8M/TempSuite9140895870843647448.bed
/tmp/adamTestMvnEoU0t8M/TempSuite9140895870843647448.bed/part-00000
/tmp/adamTestMvnEoU0t8M/TempSuite9140895870843647448.bed/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite9140895870843647448.bed/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/TempSuite9140895870843647448.bed/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite1334877051702534561
/tmp/adamTestMvnEoU0t8M/TempSuite2260939365165951605
/tmp/adamTestMvnEoU0t8M/javaAC4740167539165887156
/tmp/adamTestMvnEoU0t8M/javaAC4740167539165887156/testRdd.fragment.adam
/tmp/adamTestMvnEoU0t8M/javaAC4740167539165887156/testRdd.fragment.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/javaAC4740167539165887156/testRdd.fragment.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/javaAC4740167539165887156/testRdd.fragment.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/javaAC4740167539165887156/testRdd.fragment.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/javaAC4740167539165887156/testRdd.fragment.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/javaAC4740167539165887156/testRdd.fragment.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/javaAC4740167539165887156/testRdd.fragment.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/javaAC4740167539165887156/testRdd.fragment.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/javaAC4740167539165887156/testRdd.fragment.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/javaAC4740167539165887156/testRdd.fragment.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/javaAC4740167539165887156/testRdd.fragment.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/javaAC4740167539165887156/testRdd.fragment.adam/_metadata
/tmp/adamTestMvnEoU0t8M/javaAC4740167539165887156/testRdd.fragment.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/javaAC4740167539165887156/testRdd.fragment.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite2599434747853278433
/tmp/adamTestMvnEoU0t8M/TempSuite8760585720463252411
/tmp/adamTestMvnEoU0t8M/3217255048349727673
/tmp/adamTestMvnEoU0t8M/3217255048349727673/variants.lex.adam
/tmp/adamTestMvnEoU0t8M/3217255048349727673/variants.lex.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/3217255048349727673/variants.lex.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/3217255048349727673/variants.lex.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/3217255048349727673/variants.lex.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/3217255048349727673/variants.lex.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/3217255048349727673/variants.lex.adam/_header
/tmp/adamTestMvnEoU0t8M/3217255048349727673/variants.lex.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/3217255048349727673/variants.lex.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/3217255048349727673/variants.lex.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/3217255048349727673/variants.lex.adam/_metadata
/tmp/adamTestMvnEoU0t8M/3217255048349727673/variants.lex.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/3217255048349727673/variants.lex.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/8391916497591305972
/tmp/adamTestMvnEoU0t8M/8391916497591305972/test.fa
/tmp/adamTestMvnEoU0t8M/8391916497591305972/test.fa/part-00000
/tmp/adamTestMvnEoU0t8M/8391916497591305972/test.fa/_SUCCESS
/tmp/adamTestMvnEoU0t8M/8391916497591305972/test.fa/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/8391916497591305972/test.fa/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite6553599559710014818
/tmp/adamTestMvnEoU0t8M/7399857823996322263
/tmp/adamTestMvnEoU0t8M/7399857823996322263/.sorted.lex.vcf.crc
/tmp/adamTestMvnEoU0t8M/7399857823996322263/sorted.lex.vcf
/tmp/adamTestMvnEoU0t8M/.FeatureDatasetFunctionsSuite5189090959772134791.bed.crc
/tmp/adamTestMvnEoU0t8M/2471589607657048309
/tmp/adamTestMvnEoU0t8M/2471589607657048309/.out.cram_head.crc
/tmp/adamTestMvnEoU0t8M/2471589607657048309/out.cram
/tmp/adamTestMvnEoU0t8M/2471589607657048309/out.cram_tail
/tmp/adamTestMvnEoU0t8M/2471589607657048309/out.cram_tail/.part-r-00002.cram.crc
/tmp/adamTestMvnEoU0t8M/2471589607657048309/out.cram_tail/.part-r-00001.cram.crc
/tmp/adamTestMvnEoU0t8M/2471589607657048309/out.cram_tail/.part-r-00000.cram.crc
/tmp/adamTestMvnEoU0t8M/2471589607657048309/out.cram_tail/part-r-00003.cram
/tmp/adamTestMvnEoU0t8M/2471589607657048309/out.cram_tail/_SUCCESS
/tmp/adamTestMvnEoU0t8M/2471589607657048309/out.cram_tail/part-r-00001.cram
/tmp/adamTestMvnEoU0t8M/2471589607657048309/out.cram_tail/part-r-00000.cram
/tmp/adamTestMvnEoU0t8M/2471589607657048309/out.cram_tail/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/2471589607657048309/out.cram_tail/.part-r-00003.cram.crc
/tmp/adamTestMvnEoU0t8M/2471589607657048309/out.cram_tail/part-r-00002.cram
/tmp/adamTestMvnEoU0t8M/2471589607657048309/out.cram_head
/tmp/adamTestMvnEoU0t8M/2471589607657048309/.out.cram.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1854792178567570327
/tmp/adamTestMvnEoU0t8M/unordered.sam2729805025893563990.sam
/tmp/adamTestMvnEoU0t8M/TempSuite6086190263361812485
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite2950829516276568852.bed
/tmp/adamTestMvnEoU0t8M/TempSuite6354213762402787261.sam
/tmp/adamTestMvnEoU0t8M/TempSuite6354213762402787261.sam/part-r-00000.sam
/tmp/adamTestMvnEoU0t8M/TempSuite6354213762402787261.sam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite6354213762402787261.sam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6354213762402787261.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3883993467619378952
/tmp/adamTestMvnEoU0t8M/TempSuite620968336238196214.fq
/tmp/adamTestMvnEoU0t8M/TempSuite620968336238196214.fq/part-00000
/tmp/adamTestMvnEoU0t8M/TempSuite620968336238196214.fq/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite620968336238196214.fq/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/TempSuite620968336238196214.fq/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8971111805182524326
/tmp/adamTestMvnEoU0t8M/TempSuite3708872069287054902
/tmp/adamTestMvnEoU0t8M/TempSuite4796532187344875801.vcf
/tmp/adamTestMvnEoU0t8M/TempSuite4796532187344875801.vcf/part-r-00000
/tmp/adamTestMvnEoU0t8M/TempSuite4796532187344875801.vcf/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite4796532187344875801.vcf/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4796532187344875801.vcf/.part-r-00000.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3339347960347278648.bed
/tmp/adamTestMvnEoU0t8M/TempSuite3339347960347278648.bed/part-00000
/tmp/adamTestMvnEoU0t8M/TempSuite3339347960347278648.bed/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite3339347960347278648.bed/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3339347960347278648.bed/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7900149464941265466
/tmp/adamTestMvnEoU0t8M/TempSuite8224316108640077152.adam
/tmp/adamTestMvnEoU0t8M/TempSuite8224316108640077152.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8224316108640077152.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite8224316108640077152.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8224316108640077152.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8224316108640077152.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite8224316108640077152.adam/_header
/tmp/adamTestMvnEoU0t8M/TempSuite8224316108640077152.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite8224316108640077152.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8224316108640077152.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8224316108640077152.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite8224316108640077152.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8224316108640077152.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite1127008758708836432
/tmp/adamTestMvnEoU0t8M/TempSuite599649940098843491
/tmp/adamTestMvnEoU0t8M/TempSuite7284285160775385765.adam
/tmp/adamTestMvnEoU0t8M/TempSuite7284285160775385765.adam/._partitionedByStartPos.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7284285160775385765.adam/._samples.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7284285160775385765.adam/_samples.avro
/tmp/adamTestMvnEoU0t8M/TempSuite7284285160775385765.adam/_partitionedByStartPos
/tmp/adamTestMvnEoU0t8M/TempSuite7284285160775385765.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite7284285160775385765.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7284285160775385765.adam/referenceName=1
/tmp/adamTestMvnEoU0t8M/TempSuite7284285160775385765.adam/referenceName=1/positionBin=240
/tmp/adamTestMvnEoU0t8M/TempSuite7284285160775385765.adam/referenceName=1/positionBin=240/.part-00002-59191806-7f54-4b01-9ca8-8f7f74fc129b.c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7284285160775385765.adam/referenceName=1/positionBin=240/part-00002-59191806-7f54-4b01-9ca8-8f7f74fc129b.c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite7284285160775385765.adam/referenceName=1/positionBin=14
/tmp/adamTestMvnEoU0t8M/TempSuite7284285160775385765.adam/referenceName=1/positionBin=14/.part-00000-59191806-7f54-4b01-9ca8-8f7f74fc129b.c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7284285160775385765.adam/referenceName=1/positionBin=14/part-00000-59191806-7f54-4b01-9ca8-8f7f74fc129b.c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite7284285160775385765.adam/referenceName=1/positionBin=0
/tmp/adamTestMvnEoU0t8M/TempSuite7284285160775385765.adam/referenceName=1/positionBin=0/.part-00000-59191806-7f54-4b01-9ca8-8f7f74fc129b.c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7284285160775385765.adam/referenceName=1/positionBin=0/part-00000-59191806-7f54-4b01-9ca8-8f7f74fc129b.c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite7284285160775385765.adam/referenceName=1/positionBin=169
/tmp/adamTestMvnEoU0t8M/TempSuite7284285160775385765.adam/referenceName=1/positionBin=169/.part-00001-59191806-7f54-4b01-9ca8-8f7f74fc129b.c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7284285160775385765.adam/referenceName=1/positionBin=169/part-00001-59191806-7f54-4b01-9ca8-8f7f74fc129b.c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite7284285160775385765.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7284285160775385765.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite5766380660619733170.adam
/tmp/adamTestMvnEoU0t8M/TempSuite5766380660619733170.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/TempSuite5766380660619733170.adam/.part-00000-55dcb3c0-1e75-471c-a176-2396bb482102-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5766380660619733170.adam/part-00000-55dcb3c0-1e75-471c-a176-2396bb482102-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite5766380660619733170.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/TempSuite5766380660619733170.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5766380660619733170.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite5766380660619733170.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5766380660619733170.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5766380660619733170.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5766380660619733170.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite1896213220063570318.bed
/tmp/adamTestMvnEoU0t8M/TempSuite1896213220063570318.bed/part-00000
/tmp/adamTestMvnEoU0t8M/TempSuite1896213220063570318.bed/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite1896213220063570318.bed/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1896213220063570318.bed/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/8707008010595573766
/tmp/adamTestMvnEoU0t8M/8707008010595573766/test2.fa
/tmp/adamTestMvnEoU0t8M/8707008010595573766/test2.fa/part-00000
/tmp/adamTestMvnEoU0t8M/8707008010595573766/test2.fa/_SUCCESS
/tmp/adamTestMvnEoU0t8M/8707008010595573766/test2.fa/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/8707008010595573766/test2.fa/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8279120704475497595
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite5662919366754882718
/tmp/adamTestMvnEoU0t8M/TempSuite1031473382183728571
/tmp/adamTestMvnEoU0t8M/TempSuite7116003864141843381
/tmp/adamTestMvnEoU0t8M/TempSuite3464707990468339589.adam
/tmp/adamTestMvnEoU0t8M/TempSuite3464707990468339589.adam/._partitionedByStartPos.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3464707990468339589.adam/._samples.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3464707990468339589.adam/_samples.avro
/tmp/adamTestMvnEoU0t8M/TempSuite3464707990468339589.adam/_partitionedByStartPos
/tmp/adamTestMvnEoU0t8M/TempSuite3464707990468339589.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite3464707990468339589.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3464707990468339589.adam/referenceName=1
/tmp/adamTestMvnEoU0t8M/TempSuite3464707990468339589.adam/referenceName=1/positionBin=240
/tmp/adamTestMvnEoU0t8M/TempSuite3464707990468339589.adam/referenceName=1/positionBin=240/.part-00002-0ef5ca31-396e-4457-befa-e1c1a98160a5.c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3464707990468339589.adam/referenceName=1/positionBin=240/part-00002-0ef5ca31-396e-4457-befa-e1c1a98160a5.c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite3464707990468339589.adam/referenceName=1/positionBin=14
/tmp/adamTestMvnEoU0t8M/TempSuite3464707990468339589.adam/referenceName=1/positionBin=14/part-00000-0ef5ca31-396e-4457-befa-e1c1a98160a5.c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite3464707990468339589.adam/referenceName=1/positionBin=14/.part-00000-0ef5ca31-396e-4457-befa-e1c1a98160a5.c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3464707990468339589.adam/referenceName=1/positionBin=0
/tmp/adamTestMvnEoU0t8M/TempSuite3464707990468339589.adam/referenceName=1/positionBin=0/part-00000-0ef5ca31-396e-4457-befa-e1c1a98160a5.c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite3464707990468339589.adam/referenceName=1/positionBin=0/.part-00000-0ef5ca31-396e-4457-befa-e1c1a98160a5.c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3464707990468339589.adam/referenceName=1/positionBin=169
/tmp/adamTestMvnEoU0t8M/TempSuite3464707990468339589.adam/referenceName=1/positionBin=169/part-00001-0ef5ca31-396e-4457-befa-e1c1a98160a5.c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite3464707990468339589.adam/referenceName=1/positionBin=169/.part-00001-0ef5ca31-396e-4457-befa-e1c1a98160a5.c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3464707990468339589.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3464707990468339589.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite6878559060872733667
/tmp/adamTestMvnEoU0t8M/TempSuite8115035058669156852.bed
/tmp/adamTestMvnEoU0t8M/TempSuite8115035058669156852.bed/part-00000
/tmp/adamTestMvnEoU0t8M/TempSuite8115035058669156852.bed/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite8115035058669156852.bed/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8115035058669156852.bed/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8705914052647752731.adam
/tmp/adamTestMvnEoU0t8M/TempSuite8705914052647752731.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8705914052647752731.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite8705914052647752731.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8705914052647752731.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8705914052647752731.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite8705914052647752731.adam/_header
/tmp/adamTestMvnEoU0t8M/TempSuite8705914052647752731.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite8705914052647752731.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8705914052647752731.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8705914052647752731.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite8705914052647752731.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8705914052647752731.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/4330845734105209060
/tmp/adamTestMvnEoU0t8M/4330845734105209060/sorted-variants.lex.vcf
/tmp/adamTestMvnEoU0t8M/4330845734105209060/.sorted-variants.lex.vcf.crc
/tmp/adamTestMvnEoU0t8M/TempSuite203532377767532161.adam
/tmp/adamTestMvnEoU0t8M/TempSuite203532377767532161.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite203532377767532161.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/TempSuite203532377767532161.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite203532377767532161.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite203532377767532161.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite203532377767532161.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/TempSuite203532377767532161.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite203532377767532161.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite203532377767532161.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite203532377767532161.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite203532377767532161.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite203532377767532161.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite203532377767532161.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite203532377767532161.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite6980317967086837937
/tmp/adamTestMvnEoU0t8M/TempSuite5933876896679472214.adam
/tmp/adamTestMvnEoU0t8M/TempSuite5933876896679472214.adam/._partitionedByStartPos.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5933876896679472214.adam/._samples.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5933876896679472214.adam/_samples.avro
/tmp/adamTestMvnEoU0t8M/TempSuite5933876896679472214.adam/_partitionedByStartPos
/tmp/adamTestMvnEoU0t8M/TempSuite5933876896679472214.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite5933876896679472214.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5933876896679472214.adam/referenceName=1
/tmp/adamTestMvnEoU0t8M/TempSuite5933876896679472214.adam/referenceName=1/positionBin=240
/tmp/adamTestMvnEoU0t8M/TempSuite5933876896679472214.adam/referenceName=1/positionBin=240/part-00002-affb26bc-00b6-45be-953a-5661587b1377.c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite5933876896679472214.adam/referenceName=1/positionBin=240/.part-00002-affb26bc-00b6-45be-953a-5661587b1377.c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5933876896679472214.adam/referenceName=1/positionBin=14
/tmp/adamTestMvnEoU0t8M/TempSuite5933876896679472214.adam/referenceName=1/positionBin=14/part-00000-affb26bc-00b6-45be-953a-5661587b1377.c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite5933876896679472214.adam/referenceName=1/positionBin=14/.part-00000-affb26bc-00b6-45be-953a-5661587b1377.c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5933876896679472214.adam/referenceName=1/positionBin=0
/tmp/adamTestMvnEoU0t8M/TempSuite5933876896679472214.adam/referenceName=1/positionBin=0/part-00000-affb26bc-00b6-45be-953a-5661587b1377.c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite5933876896679472214.adam/referenceName=1/positionBin=0/.part-00000-affb26bc-00b6-45be-953a-5661587b1377.c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5933876896679472214.adam/referenceName=1/positionBin=169
/tmp/adamTestMvnEoU0t8M/TempSuite5933876896679472214.adam/referenceName=1/positionBin=169/.part-00001-affb26bc-00b6-45be-953a-5661587b1377.c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5933876896679472214.adam/referenceName=1/positionBin=169/part-00001-affb26bc-00b6-45be-953a-5661587b1377.c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite5933876896679472214.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5933876896679472214.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite4117322994145236959
/tmp/adamTestMvnEoU0t8M/5480854053250021840
/tmp/adamTestMvnEoU0t8M/5480854053250021840/genotypes.lex.adam
/tmp/adamTestMvnEoU0t8M/5480854053250021840/genotypes.lex.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/5480854053250021840/genotypes.lex.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/5480854053250021840/genotypes.lex.adam/._samples.avro.crc
/tmp/adamTestMvnEoU0t8M/5480854053250021840/genotypes.lex.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/5480854053250021840/genotypes.lex.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/5480854053250021840/genotypes.lex.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/5480854053250021840/genotypes.lex.adam/_samples.avro
/tmp/adamTestMvnEoU0t8M/5480854053250021840/genotypes.lex.adam/_header
/tmp/adamTestMvnEoU0t8M/5480854053250021840/genotypes.lex.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/5480854053250021840/genotypes.lex.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/5480854053250021840/genotypes.lex.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/5480854053250021840/genotypes.lex.adam/_metadata
/tmp/adamTestMvnEoU0t8M/5480854053250021840/genotypes.lex.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/5480854053250021840/genotypes.lex.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite8954647380751763503
/tmp/adamTestMvnEoU0t8M/TempSuite4421803340487266181.adam
/tmp/adamTestMvnEoU0t8M/TempSuite4421803340487266181.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4421803340487266181.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite4421803340487266181.adam/._samples.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4421803340487266181.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4421803340487266181.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4421803340487266181.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite4421803340487266181.adam/_samples.avro
/tmp/adamTestMvnEoU0t8M/TempSuite4421803340487266181.adam/_header
/tmp/adamTestMvnEoU0t8M/TempSuite4421803340487266181.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite4421803340487266181.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4421803340487266181.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4421803340487266181.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite4421803340487266181.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4421803340487266181.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite931115584483756663
/tmp/adamTestMvnEoU0t8M/7727013902013669722
/tmp/adamTestMvnEoU0t8M/7727013902013669722/.sorted.lex.vcf.crc
/tmp/adamTestMvnEoU0t8M/7727013902013669722/sorted.lex.vcf
/tmp/adamTestMvnEoU0t8M/TempSuite3339347960347278648
/tmp/adamTestMvnEoU0t8M/TempSuite8055070180012296390
/tmp/adamTestMvnEoU0t8M/TempSuite784281684156439892.bed
/tmp/adamTestMvnEoU0t8M/TempSuite784281684156439892.bed/part-00000
/tmp/adamTestMvnEoU0t8M/TempSuite784281684156439892.bed/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite784281684156439892.bed/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/TempSuite784281684156439892.bed/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite1564826055446259946
/tmp/adamTestMvnEoU0t8M/TempSuite6900122121203563772.adam
/tmp/adamTestMvnEoU0t8M/TempSuite6900122121203563772.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6900122121203563772.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/TempSuite6900122121203563772.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite6900122121203563772.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6900122121203563772.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite6900122121203563772.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/TempSuite6900122121203563772.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6900122121203563772.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite6900122121203563772.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6900122121203563772.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6900122121203563772.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6900122121203563772.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite6900122121203563772.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6900122121203563772.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/small.sam300737517478076896.sam
/tmp/adamTestMvnEoU0t8M/TempSuite788934333515945794
/tmp/adamTestMvnEoU0t8M/TempSuite4730250939858707363.adam
/tmp/adamTestMvnEoU0t8M/TempSuite4730250939858707363.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4730250939858707363.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/TempSuite4730250939858707363.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite4730250939858707363.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4730250939858707363.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite4730250939858707363.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/TempSuite4730250939858707363.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4730250939858707363.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite4730250939858707363.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4730250939858707363.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4730250939858707363.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4730250939858707363.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite4730250939858707363.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4730250939858707363.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite4730250939858707363
/tmp/adamTestMvnEoU0t8M/6367572519089653230
/tmp/adamTestMvnEoU0t8M/6367572519089653230/variants.lex.adam
/tmp/adamTestMvnEoU0t8M/6367572519089653230/variants.lex.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/6367572519089653230/variants.lex.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/6367572519089653230/variants.lex.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/6367572519089653230/variants.lex.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/6367572519089653230/variants.lex.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/6367572519089653230/variants.lex.adam/_header
/tmp/adamTestMvnEoU0t8M/6367572519089653230/variants.lex.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/6367572519089653230/variants.lex.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/6367572519089653230/variants.lex.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/6367572519089653230/variants.lex.adam/_metadata
/tmp/adamTestMvnEoU0t8M/6367572519089653230/variants.lex.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/6367572519089653230/variants.lex.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/unordered.sam4957535122601306096.sam
/tmp/adamTestMvnEoU0t8M/bqsr1.sam2738863695789900852.sam
/tmp/adamTestMvnEoU0t8M/8348930632339925343
/tmp/adamTestMvnEoU0t8M/8348930632339925343/artificial.cram
/tmp/adamTestMvnEoU0t8M/8348930632339925343/.artificial.cram.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite1923709467806889691.gff3
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite1923709467806889691.gff3/part-00002
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite1923709467806889691.gff3/.part-00003.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite1923709467806889691.gff3/part-00000
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite1923709467806889691.gff3/part-00003
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite1923709467806889691.gff3/.part-00002.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite1923709467806889691.gff3/_SUCCESS
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite1923709467806889691.gff3/part-00001
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite1923709467806889691.gff3/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite1923709467806889691.gff3/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite1923709467806889691.gff3/.part-00001.crc
/tmp/adamTestMvnEoU0t8M/1557957271450-0
/tmp/adamTestMvnEoU0t8M/1557957271450-0/test.fa
/tmp/adamTestMvnEoU0t8M/1557957271450-0/test.fa/part-00000
/tmp/adamTestMvnEoU0t8M/1557957271450-0/test.fa/_SUCCESS
/tmp/adamTestMvnEoU0t8M/1557957271450-0/test.fa/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/1557957271450-0/test.fa/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite4481801702312371247.interval_list
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite4481801702312371247.interval_list/part-00002
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite4481801702312371247.interval_list/.part-00003.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite4481801702312371247.interval_list/part-00000
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite4481801702312371247.interval_list/part-00003
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite4481801702312371247.interval_list/.part-00002.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite4481801702312371247.interval_list/_SUCCESS
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite4481801702312371247.interval_list/part-00001
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite4481801702312371247.interval_list/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite4481801702312371247.interval_list/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite4481801702312371247.interval_list/.part-00001.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3006666452495851158.interval_list
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3006666452495851158.interval_list/part-00002
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3006666452495851158.interval_list/.part-00003.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3006666452495851158.interval_list/part-00000
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3006666452495851158.interval_list/part-00003
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3006666452495851158.interval_list/.part-00002.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3006666452495851158.interval_list/_SUCCESS
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3006666452495851158.interval_list/part-00001
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3006666452495851158.interval_list/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3006666452495851158.interval_list/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3006666452495851158.interval_list/.part-00001.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2290534532271351380.sam
/tmp/adamTestMvnEoU0t8M/TempSuite1896213220063570318
/tmp/adamTestMvnEoU0t8M/6021086456085603869
/tmp/adamTestMvnEoU0t8M/6021086456085603869/genotypes.nested-annotations.adam
/tmp/adamTestMvnEoU0t8M/6021086456085603869/genotypes.nested-annotations.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/6021086456085603869/genotypes.nested-annotations.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/6021086456085603869/genotypes.nested-annotations.adam/._samples.avro.crc
/tmp/adamTestMvnEoU0t8M/6021086456085603869/genotypes.nested-annotations.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/6021086456085603869/genotypes.nested-annotations.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/6021086456085603869/genotypes.nested-annotations.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/6021086456085603869/genotypes.nested-annotations.adam/_samples.avro
/tmp/adamTestMvnEoU0t8M/6021086456085603869/genotypes.nested-annotations.adam/_header
/tmp/adamTestMvnEoU0t8M/6021086456085603869/genotypes.nested-annotations.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/6021086456085603869/genotypes.nested-annotations.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/6021086456085603869/genotypes.nested-annotations.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/6021086456085603869/genotypes.nested-annotations.adam/_metadata
/tmp/adamTestMvnEoU0t8M/6021086456085603869/genotypes.nested-annotations.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/6021086456085603869/genotypes.nested-annotations.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/javaAC6085168547002549922
/tmp/adamTestMvnEoU0t8M/javaAC6085168547002549922/testRdd.read.adam
/tmp/adamTestMvnEoU0t8M/javaAC6085168547002549922/testRdd.read.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/javaAC6085168547002549922/testRdd.read.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/javaAC6085168547002549922/testRdd.read.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/javaAC6085168547002549922/testRdd.read.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/javaAC6085168547002549922/testRdd.read.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/javaAC6085168547002549922/testRdd.read.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/javaAC6085168547002549922/testRdd.read.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/javaAC6085168547002549922/testRdd.read.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/javaAC6085168547002549922/testRdd.read.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/javaAC6085168547002549922/testRdd.read.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/javaAC6085168547002549922/testRdd.read.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/javaAC6085168547002549922/testRdd.read.adam/_metadata
/tmp/adamTestMvnEoU0t8M/javaAC6085168547002549922/testRdd.read.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/javaAC6085168547002549922/testRdd.read.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite4586639321366024300
/tmp/adamTestMvnEoU0t8M/TempSuite3343086239702520344
/tmp/adamTestMvnEoU0t8M/TempSuite4255808750790718941.adam
/tmp/adamTestMvnEoU0t8M/TempSuite4255808750790718941.adam/part-00000-28ea057a-6d6d-4837-b589-370e2b794464-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite4255808750790718941.adam/._samples.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4255808750790718941.adam/.part-00000-28ea057a-6d6d-4837-b589-370e2b794464-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4255808750790718941.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4255808750790718941.adam/_samples.avro
/tmp/adamTestMvnEoU0t8M/TempSuite4255808750790718941.adam/_header
/tmp/adamTestMvnEoU0t8M/TempSuite4255808750790718941.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite4255808750790718941.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4255808750790718941.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4255808750790718941.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite7250404884843167483
/tmp/adamTestMvnEoU0t8M/TempSuite1829719247992619316
/tmp/adamTestMvnEoU0t8M/javaAC4967458145910599610
/tmp/adamTestMvnEoU0t8M/javaAC4967458145910599610/testRdd.contig.adam
/tmp/adamTestMvnEoU0t8M/javaAC4967458145910599610/testRdd.contig.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/javaAC4967458145910599610/testRdd.contig.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/javaAC4967458145910599610/testRdd.contig.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/javaAC4967458145910599610/testRdd.contig.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/javaAC4967458145910599610/testRdd.contig.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/javaAC4967458145910599610/testRdd.contig.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/javaAC4967458145910599610/testRdd.contig.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/javaAC4967458145910599610/testRdd.contig.adam/_metadata
/tmp/adamTestMvnEoU0t8M/javaAC4967458145910599610/testRdd.contig.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/javaAC4967458145910599610/testRdd.contig.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite5011188957161674893
/tmp/adamTestMvnEoU0t8M/142350421583139360
/tmp/adamTestMvnEoU0t8M/142350421583139360/predicate.1.adam
/tmp/adamTestMvnEoU0t8M/142350421583139360/predicate.1.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/142350421583139360/predicate.1.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/142350421583139360/predicate.1.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/142350421583139360/predicate.1.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/142350421583139360/predicate.1.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/142350421583139360/predicate.1.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/142350421583139360/predicate.1.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/142350421583139360/predicate.1.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/142350421583139360/predicate.1.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/142350421583139360/predicate.1.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/142350421583139360/predicate.1.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/142350421583139360/predicate.1.adam/_metadata
/tmp/adamTestMvnEoU0t8M/142350421583139360/predicate.1.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/142350421583139360/predicate.1.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite400319022251690820
/tmp/adamTestMvnEoU0t8M/TempSuite3365645009318009520.adam
/tmp/adamTestMvnEoU0t8M/TempSuite3365645009318009520.adam/.part-00000-d9bb944b-c4c9-4c80-a66e-c9096fb66dba-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3365645009318009520.adam/part-00002-d9bb944b-c4c9-4c80-a66e-c9096fb66dba-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite3365645009318009520.adam/part-00000-d9bb944b-c4c9-4c80-a66e-c9096fb66dba-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite3365645009318009520.adam/part-00001-d9bb944b-c4c9-4c80-a66e-c9096fb66dba-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite3365645009318009520.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite3365645009318009520.adam/.part-00002-d9bb944b-c4c9-4c80-a66e-c9096fb66dba-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3365645009318009520.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3365645009318009520.adam/.part-00001-d9bb944b-c4c9-4c80-a66e-c9096fb66dba-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3365645009318009520.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3365645009318009520.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/bqsr15571778435863559939
/tmp/adamTestMvnEoU0t8M/bqsr15571778435863559939/.bqsr1.bam.crc
/tmp/adamTestMvnEoU0t8M/bqsr15571778435863559939/bqsr1.bam
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3679525687411650867
/tmp/adamTestMvnEoU0t8M/4213472978490587943
/tmp/adamTestMvnEoU0t8M/4213472978490587943/artificial.cram
/tmp/adamTestMvnEoU0t8M/4213472978490587943/artificial.cram/.part-r-00000.cram.crc
/tmp/adamTestMvnEoU0t8M/4213472978490587943/artificial.cram/_SUCCESS
/tmp/adamTestMvnEoU0t8M/4213472978490587943/artificial.cram/part-r-00000.cram
/tmp/adamTestMvnEoU0t8M/4213472978490587943/artificial.cram/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7382473901725847072.sam
/tmp/adamTestMvnEoU0t8M/TempSuite8478312831873353695.adam
/tmp/adamTestMvnEoU0t8M/TempSuite8478312831873353695.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8478312831873353695.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/TempSuite8478312831873353695.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite8478312831873353695.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8478312831873353695.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite8478312831873353695.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/TempSuite8478312831873353695.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8478312831873353695.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite8478312831873353695.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8478312831873353695.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8478312831873353695.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8478312831873353695.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite8478312831873353695.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8478312831873353695.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite9051789850200231678
/tmp/adamTestMvnEoU0t8M/1557957269353-0
/tmp/adamTestMvnEoU0t8M/1557957269353-0/test.fa
/tmp/adamTestMvnEoU0t8M/1557957269353-0/test.fa/part-00000
/tmp/adamTestMvnEoU0t8M/1557957269353-0/test.fa/_SUCCESS
/tmp/adamTestMvnEoU0t8M/1557957269353-0/test.fa/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/1557957269353-0/test.fa/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/artificial.sam6529373593681842717.sam
/tmp/adamTestMvnEoU0t8M/2507139795620058663
/tmp/adamTestMvnEoU0t8M/2507139795620058663/variants.adam
/tmp/adamTestMvnEoU0t8M/2507139795620058663/variants.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/2507139795620058663/variants.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/2507139795620058663/variants.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/2507139795620058663/variants.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/2507139795620058663/variants.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/2507139795620058663/variants.adam/_header
/tmp/adamTestMvnEoU0t8M/2507139795620058663/variants.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/2507139795620058663/variants.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/2507139795620058663/variants.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/2507139795620058663/variants.adam/_metadata
/tmp/adamTestMvnEoU0t8M/2507139795620058663/variants.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/2507139795620058663/variants.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite2599434747853278433_1.fq
/tmp/adamTestMvnEoU0t8M/TempSuite2599434747853278433_1.fq/part-00000
/tmp/adamTestMvnEoU0t8M/TempSuite2599434747853278433_1.fq/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite2599434747853278433_1.fq/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2599434747853278433_1.fq/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/7128246546592671646
/tmp/adamTestMvnEoU0t8M/7128246546592671646/.sorted-variants.vcf.crc
/tmp/adamTestMvnEoU0t8M/7128246546592671646/sorted-variants.vcf
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite2114460373566561308.narrowPeak
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite2114460373566561308.narrowPeak/part-00002
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite2114460373566561308.narrowPeak/.part-00003.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite2114460373566561308.narrowPeak/part-00000
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite2114460373566561308.narrowPeak/part-00003
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite2114460373566561308.narrowPeak/.part-00002.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite2114460373566561308.narrowPeak/_SUCCESS
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite2114460373566561308.narrowPeak/part-00001
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite2114460373566561308.narrowPeak/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite2114460373566561308.narrowPeak/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite2114460373566561308.narrowPeak/.part-00001.crc
/tmp/adamTestMvnEoU0t8M/TempSuite6419673112058934149
/tmp/adamTestMvnEoU0t8M/TempSuite6693098708887781073
/tmp/adamTestMvnEoU0t8M/1557957041453-0
/tmp/adamTestMvnEoU0t8M/1557957041453-0/.test.gvcf.vcf.crc
/tmp/adamTestMvnEoU0t8M/1557957041453-0/test.gvcf.vcf
/tmp/adamTestMvnEoU0t8M/TempSuite2980928690439324922.adam
/tmp/adamTestMvnEoU0t8M/TempSuite2980928690439324922.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2980928690439324922.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite2980928690439324922.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2980928690439324922.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite2980928690439324922.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite2980928690439324922.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2980928690439324922.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2980928690439324922.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite2980928690439324922.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2980928690439324922.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/unordered.sam2796444978591643982.sam
/tmp/adamTestMvnEoU0t8M/TempSuite5677522422687584817.adam
/tmp/adamTestMvnEoU0t8M/TempSuite5677522422687584817.adam/._samples.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5677522422687584817.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5677522422687584817.adam/part-00000-720c7361-02dc-4c41-8d9c-8d0589555e91-c000.snappy.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite5677522422687584817.adam/_samples.avro
/tmp/adamTestMvnEoU0t8M/TempSuite5677522422687584817.adam/.part-00000-720c7361-02dc-4c41-8d9c-8d0589555e91-c000.snappy.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5677522422687584817.adam/_header
/tmp/adamTestMvnEoU0t8M/TempSuite5677522422687584817.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite5677522422687584817.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5677522422687584817.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5677522422687584817.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/unsorted.sam3581540477040683069.sam
/tmp/adamTestMvnEoU0t8M/chr20.250k.fa.gz8933865436820159658.250k.fa.gz
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite8543299126102489560
/tmp/adamTestMvnEoU0t8M/unordered.sam1969845849260581978.sam
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3857848531948874574.bed
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3857848531948874574.bed/part-00002
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3857848531948874574.bed/.part-00003.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3857848531948874574.bed/part-00000
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3857848531948874574.bed/part-00003
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3857848531948874574.bed/.part-00002.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3857848531948874574.bed/_SUCCESS
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3857848531948874574.bed/part-00001
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3857848531948874574.bed/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3857848531948874574.bed/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite3857848531948874574.bed/.part-00001.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2434331958832761883
/tmp/adamTestMvnEoU0t8M/TempSuite2456641050858305435.sam
/tmp/adamTestMvnEoU0t8M/TempSuite2456641050858305435.sam/part-r-00000.sam
/tmp/adamTestMvnEoU0t8M/TempSuite2456641050858305435.sam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite2456641050858305435.sam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2456641050858305435.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnEoU0t8M/TempSuite502335560193261156.bam
/tmp/adamTestMvnEoU0t8M/TempSuite502335560193261156.bam/part-r-00000.bam
/tmp/adamTestMvnEoU0t8M/TempSuite502335560193261156.bam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite502335560193261156.bam/.part-r-00000.bam.crc
/tmp/adamTestMvnEoU0t8M/TempSuite502335560193261156.bam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7767451435060779588.adam
/tmp/adamTestMvnEoU0t8M/TempSuite7767451435060779588.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7767451435060779588.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite7767451435060779588.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite7767451435060779588.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7767451435060779588.adam/._samples.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7767451435060779588.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7767451435060779588.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite7767451435060779588.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7767451435060779588.adam/_samples.avro
/tmp/adamTestMvnEoU0t8M/TempSuite7767451435060779588.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite7767451435060779588.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7767451435060779588.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite7767451435060779588.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite7767451435060779588.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7767451435060779588.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7767451435060779588.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite7767451435060779588.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite7767451435060779588.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite5383070667771871414.bed
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite5383070667771871414.bed/part-00002
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite5383070667771871414.bed/.part-00003.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite5383070667771871414.bed/part-00000
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite5383070667771871414.bed/part-00003
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite5383070667771871414.bed/.part-00002.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite5383070667771871414.bed/_SUCCESS
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite5383070667771871414.bed/part-00001
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite5383070667771871414.bed/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite5383070667771871414.bed/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite5383070667771871414.bed/.part-00001.crc
/tmp/adamTestMvnEoU0t8M/FeatureDatasetFunctionsSuite7658558967657784066
/tmp/adamTestMvnEoU0t8M/TempSuite4960592003074090947_1.fq
/tmp/adamTestMvnEoU0t8M/TempSuite4960592003074090947_1.fq/part-00000
/tmp/adamTestMvnEoU0t8M/TempSuite4960592003074090947_1.fq/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite4960592003074090947_1.fq/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4960592003074090947_1.fq/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2856966117942829802
/tmp/adamTestMvnEoU0t8M/TempSuite1541228327283081784
/tmp/adamTestMvnEoU0t8M/bqsr1.sam1011535849088222087.sam
/tmp/adamTestMvnEoU0t8M/TempSuite9165311972398983655
/tmp/adamTestMvnEoU0t8M/TempSuite8422383581960980573.bed
/tmp/adamTestMvnEoU0t8M/TempSuite8422383581960980573.bed/part-00000
/tmp/adamTestMvnEoU0t8M/TempSuite8422383581960980573.bed/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite8422383581960980573.bed/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8422383581960980573.bed/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5156472455783216627.fq
/tmp/adamTestMvnEoU0t8M/TempSuite5156472455783216627.fq/part-00000
/tmp/adamTestMvnEoU0t8M/TempSuite5156472455783216627.fq/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite5156472455783216627.fq/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/TempSuite5156472455783216627.fq/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2230993121681716026.adam
/tmp/adamTestMvnEoU0t8M/TempSuite2230993121681716026.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2230993121681716026.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite2230993121681716026.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2230993121681716026.adam/._header.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2230993121681716026.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite2230993121681716026.adam/_header
/tmp/adamTestMvnEoU0t8M/TempSuite2230993121681716026.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite2230993121681716026.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2230993121681716026.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2230993121681716026.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite2230993121681716026.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2230993121681716026.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite4426585655261723719
/tmp/adamTestMvnEoU0t8M/TempSuite8664543419577158048.adam
/tmp/adamTestMvnEoU0t8M/TempSuite8664543419577158048.adam/._common_metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8664543419577158048.adam/_readGroups.avro
/tmp/adamTestMvnEoU0t8M/TempSuite8664543419577158048.adam/_common_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite8664543419577158048.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite8664543419577158048.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8664543419577158048.adam/._metadata.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8664543419577158048.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite8664543419577158048.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8664543419577158048.adam/_processingSteps.avro
/tmp/adamTestMvnEoU0t8M/TempSuite8664543419577158048.adam/._readGroups.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8664543419577158048.adam/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite8664543419577158048.adam/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8664543419577158048.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite8664543419577158048.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnEoU0t8M/TempSuite8664543419577158048.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8664543419577158048.adam/._processingSteps.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8664543419577158048.adam/._references.avro.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8664543419577158048.adam/_metadata
/tmp/adamTestMvnEoU0t8M/TempSuite8664543419577158048.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnEoU0t8M/TempSuite8664543419577158048.adam/_references.avro
/tmp/adamTestMvnEoU0t8M/TempSuite3422578519940815606.bed
/tmp/adamTestMvnEoU0t8M/TempSuite3422578519940815606.bed/part-00000
/tmp/adamTestMvnEoU0t8M/TempSuite3422578519940815606.bed/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite3422578519940815606.bed/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/TempSuite3422578519940815606.bed/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/TempSuite2787369316736379595
/tmp/adamTestMvnEoU0t8M/TempSuite2290534532271351380
/tmp/adamTestMvnEoU0t8M/5988808644682860246
/tmp/adamTestMvnEoU0t8M/5988808644682860246/.ordered.sam.crc
/tmp/adamTestMvnEoU0t8M/5988808644682860246/ordered.sam
/tmp/adamTestMvnEoU0t8M/5183474111348142722
/tmp/adamTestMvnEoU0t8M/5183474111348142722/.unordered.sam.crc
/tmp/adamTestMvnEoU0t8M/5183474111348142722/unordered.sam
/tmp/adamTestMvnEoU0t8M/TempSuite4251137371915554141
/tmp/adamTestMvnEoU0t8M/TempSuite522753161650294181
/tmp/adamTestMvnEoU0t8M/TempSuite4720628836161193522.bed
/tmp/adamTestMvnEoU0t8M/TempSuite4720628836161193522.bed/part-00000
/tmp/adamTestMvnEoU0t8M/TempSuite4720628836161193522.bed/_SUCCESS
/tmp/adamTestMvnEoU0t8M/TempSuite4720628836161193522.bed/.part-00000.crc
/tmp/adamTestMvnEoU0t8M/TempSuite4720628836161193522.bed/._SUCCESS.crc
/tmp/adamTestMvnEoU0t8M/3967092531094886629
/tmp/adamTestMvnEoU0t8M/3967092531094886629/artificial.cram
/tmp/adamTestMvnEoU0t8M/3967092531094886629/.artificial.cram.crc
rm -rf ${ADAM_MVN_TMP_DIR}
+ rm -rf /tmp/adamTestMvnEoU0t8M

find . -name pom.xml \
    -exec sed -i.bak \
    -e "s:sun.io.serialization.extendedDebugInfo=true -Djava.io.tmpdir=${ADAM_MVN_TMP_DIR}:sun.io.serialization.extendedDebugInfo=true:g" \
    {} \;
+ find . -name pom.xml -exec sed -i.bak -e 's:sun.io.serialization.extendedDebugInfo=true -Djava.io.tmpdir=/tmp/adamTestMvnEoU0t8M:sun.io.serialization.extendedDebugInfo=true:g' '{}' ';'
find . -name "*.bak" -exec rm -f {} \;
+ find . -name '*.bak' -exec rm -f '{}' ';'

# run integration tests

# make a temp directory
ADAM_TMP_DIR=$(mktemp -d -t adamTestXXXXXXX)
mktemp -d -t adamTestXXXXXXX
++ mktemp -d -t adamTestXXXXXXX
+ ADAM_TMP_DIR=/tmp/adamTestG1nM6Iy

# Just to be paranoid.. use a directory internal to the ADAM_TMP_DIR
ADAM_TMP_DIR=$ADAM_TMP_DIR/deleteMePleaseThisIsNoLongerNeeded
+ ADAM_TMP_DIR=/tmp/adamTestG1nM6Iy/deleteMePleaseThisIsNoLongerNeeded
mkdir $ADAM_TMP_DIR
+ mkdir /tmp/adamTestG1nM6Iy/deleteMePleaseThisIsNoLongerNeeded

# set the TMPDIR envar, which is used by python to choose where to make temp directories
export TMPDIR=${ADAM_TMP_DIR}
+ export TMPDIR=/tmp/adamTestG1nM6Iy/deleteMePleaseThisIsNoLongerNeeded
+ TMPDIR=/tmp/adamTestG1nM6Iy/deleteMePleaseThisIsNoLongerNeeded

pushd $PROJECT_ROOT
+ pushd /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu/scripts/..
~/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu ~/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu

# Copy the jar into our temp space for testing
cp -r . $ADAM_TMP_DIR
+ cp -r . /tmp/adamTestG1nM6Iy/deleteMePleaseThisIsNoLongerNeeded
popd
+ popd
~/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu

pushd $ADAM_TMP_DIR
+ pushd /tmp/adamTestG1nM6Iy/deleteMePleaseThisIsNoLongerNeeded
/tmp/adamTestG1nM6Iy/deleteMePleaseThisIsNoLongerNeeded ~/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.3/label/ubuntu

# what hadoop version are we on? format string for downloading spark assembly
if [[ $HADOOP_VERSION =~ ^2\.6 ]]; then
    HADOOP=hadoop2.6
elif [[ $HADOOP_VERSION =~ ^2\.7 ]]; then
    HADOOP=hadoop2.7
else
    echo "Unknown Hadoop version."
    exit 1
fi
+ [[ 2.7.5 =~ ^2\.6 ]]
+ [[ 2.7.5 =~ ^2\.7 ]]
+ HADOOP=hadoop2.7

# set spark artifact string for downloading assembly
SPARK=spark-${SPARK_VERSION}
+ SPARK=spark-2.4.3
    
# download prepackaged spark assembly

# Spark 2.4.3 needs special case for Scala 2.12
if [ ${SCALAVER} == 2.12 ];
then
    curl \
        -L "https://www.apache.org/dyn/mirrors/mirrors.cgi?action=download&filename=spark/${SPARK}/${SPARK}-bin-without-hadoop-scala-2.12.tgz" \
        -o ${SPARK}-bin-without-hadoop-scala-2.12.tgz

    tar xzvf ${SPARK}-bin-without-hadoop-scala-2.12.tgz
    export SPARK_HOME=${ADAM_TMP_DIR}/${SPARK}-bin-without-hadoop-scala-2.12

    curl \
        -L "http://www-us.apache.org/dist/hadoop/common/hadoop-2.7.7/hadoop-2.7.7.tar.gz" \
        -o hadoop-2.7.7.tar.gz

    tar xzvf hadoop-2.7.7.tar.gz
    export SPARK_DIST_CLASSPATH=$(hadoop-2.7.7/bin/hadoop classpath)
else
    curl \
        -L "https://www.apache.org/dyn/mirrors/mirrors.cgi?action=download&filename=spark/${SPARK}/${SPARK}-bin-${HADOOP}.tgz" \
        -o ${SPARK}-bin-${HADOOP}.tgz

    tar xzvf ${SPARK}-bin-${HADOOP}.tgz
    export SPARK_HOME=${ADAM_TMP_DIR}/${SPARK}-bin-${HADOOP}
fi
+ '[' 2.11 == 2.12 ']'
+ curl -L 'https://www.apache.org/dyn/mirrors/mirrors.cgi?action=download&filename=spark/spark-2.4.3/spark-2.4.3-bin-hadoop2.7.tgz' -o spark-2.4.3-bin-hadoop2.7.tgz
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0

  0  219M    0  109k    0     0   141k      0  0:26:24 --:--:--  0:26:24  141k
  0  219M    0  678k    0     0   387k      0  0:09:40  0:00:01  0:09:39  579k
  0  219M    0 1535k    0     0   558k      0  0:06:42  0:00:02  0:06:40  720k
  1  219M    1 2559k    0     0   680k      0  0:05:29  0:00:03  0:05:26  820k
  1  219M    1 3929k    0     0   825k      0  0:04:31  0:00:04  0:04:27  958k
  2  219M    2 5768k    0     0  1002k      0  0:03:44  0:00:05  0:03:39 1135k
  3  219M    3 8015k    0     0  1186k      0  0:03:09  0:00:06  0:03:03 1466k
  4  219M    4 9543k    0     0  1227k      0  0:03:03  0:00:07  0:02:56 1593k
  4  219M    4 10.7M    0     0  1256k      0  0:02:58  0:00:08  0:02:50 1688k
  5  219M    5 12.5M    0     0  1314k      0  0:02:50  0:00:09  0:02:41 1780k
  6  219M    6 14.2M    0     0  1357k      0  0:02:45  0:00:10  0:02:35 1767k
  7  219M    7 16.0M    0     0  1396k      0  0:02:40  0:00:11  0:02:29 1678k
  8  219M    8 17.8M    0     0  1428k      0  0:02:37  0:00:12  0:02:25 1741k
  9  219M    9 19.8M    0     0  1476k      0  0:02:32  0:00:13  0:02:19 1859k
  9  219M    9 21.4M    0     0  1490k      0  0:02:30  0:00:14  0:02:16 1833k
 10  219M   10 23.2M    0     0  1511k      0  0:02:28  0:00:15  0:02:13 1842k
 11  219M   11 25.6M    0     0  1564k      0  0:02:23  0:00:16  0:02:07 1960k
 12  219M   12 26.9M    0     0  1554k      0  0:02:24  0:00:17  0:02:07 1878k
 13  219M   13 28.7M    0     0  1569k      0  0:02:23  0:00:18  0:02:05 1826k
 13  219M   13 30.4M    0     0  1580k      0  0:02:22  0:00:19  0:02:03 1846k
 14  219M   14 31.5M    0     0  1558k      0  0:02:24  0:00:20  0:02:04 1704k
 14  219M   14 32.5M    0     0  1530k      0  0:02:26  0:00:21  0:02:05 1413k
 15  219M   15 33.2M    0     0  1497k      0  0:02:29  0:00:22  0:02:07 1294k
 15  219M   15 34.7M    0     0  1497k      0  0:02:29  0:00:23  0:02:06 1229k
 16  219M   16 36.2M    0     0  1498k      0  0:02:29  0:00:24  0:02:05 1174k
 17  219M   17 37.8M    0     0  1504k      0  0:02:29  0:00:25  0:02:04 1282k
 18  219M   18 39.5M    0     0  1512k      0  0:02:28  0:00:26  0:02:02 1436k
 18  219M   18 41.3M    0     0  1523k      0  0:02:27  0:00:27  0:02:00 1639k
 19  219M   19 43.0M    0     0  1533k      0  0:02:26  0:00:28  0:01:58 1702k
 20  219M   20 44.3M    0     0  1527k      0  0:02:26  0:00:29  0:01:57 1674k
 20  219M   20 45.5M    0     0  1517k      0  0:02:28  0:00:30  0:01:58 1584k
 21  219M   21 47.5M    0     0  1531k      0  0:02:26  0:00:31  0:01:55 1633k
 22  219M   22 48.9M    0     0  1529k      0  0:02:26  0:00:32  0:01:54 1562k
 22  219M   22 49.9M    0     0  1513k      0  0:02:28  0:00:33  0:01:55 1400k
 23  219M   23 51.6M    0     0  1521k      0  0:02:27  0:00:34  0:01:53 1480k
 24  219M   24 53.4M    0     0  1528k      0  0:02:26  0:00:35  0:01:51 1599k
 25  219M   25 55.1M    0     0  1536k      0  0:02:26  0:00:36  0:01:50 1567k
 25  219M   25 56.9M    0     0  1543k      0  0:02:25  0:00:37  0:01:48 1633k
 26  219M   26 58.6M    0     0  1549k      0  0:02:24  0:00:38  0:01:46 1794k
 27  219M   27 60.7M    0     0  1565k      0  0:02:23  0:00:39  0:01:44 1871k
 28  219M   28 61.7M    0     0  1551k      0  0:02:24  0:00:40  0:01:44 1714k
 29  219M   29 63.6M    0     0  1560k      0  0:02:23  0:00:41  0:01:42 1738k
 30  219M   30 66.1M    0     0  1583k      0  0:02:21  0:00:42  0:01:39 1885k
 30  219M   30 67.0M    0     0  1569k      0  0:02:23  0:00:43  0:01:40 1719k
 31  219M   31 68.5M    0     0  1567k      0  0:02:23  0:00:44  0:01:39 1586k
 32  219M   32 70.5M    0     0  1577k      0  0:02:22  0:00:45  0:01:37 1792k
 32  219M   32 71.9M    0     0  1563k      0  0:02:23  0:00:47  0:01:36 1587k
 32  219M   32 72.0M    0     0  1545k      0  0:02:25  0:00:47  0:01:38 1222k
 33  219M   33 72.4M    0     0  1521k      0  0:02:27  0:00:48  0:01:39 1107k
 33  219M   33 73.0M    0     0  1503k      0  0:02:29  0:00:49  0:01:40  922k
 33  219M   33 73.7M    0     0  1487k      0  0:02:31  0:00:50  0:01:41  658k
 34  219M   34 74.8M    0     0  1480k      0  0:02:31  0:00:51  0:01:40  638k
 34  219M   34 76.6M    0     0  1487k      0  0:02:30  0:00:52  0:01:38  935k
 35  219M   35 78.2M    0     0  1490k      0  0:02:30  0:00:53  0:01:37 1181k
 36  219M   36 79.9M    0     0  1494k      0  0:02:30  0:00:54  0:01:36 1410k
 37  219M   37 81.6M    0     0  1499k      0  0:02:29  0:00:55  0:01:34 1626k
 38  219M   38 83.4M    0     0  1504k      0  0:02:29  0:00:56  0:01:33 1756k
 38  219M   38 85.2M    0     0  1510k      0  0:02:28  0:00:57  0:01:31 1747k
 39  219M   39 87.0M    0     0  1516k      0  0:02:28  0:00:58  0:01:30 1795k
 40  219M   40 89.4M    0     0  1531k      0  0:02:26  0:00:59  0:01:27 1937k
 41  219M   41 90.7M    0     0  1530k      0  0:02:26  0:01:00  0:01:26 1869k
 42  219M   42 92.7M    0     0  1538k      0  0:02:26  0:01:01  0:01:25 1918k
 43  219M   43 94.8M    0     0  1547k      0  0:02:25  0:01:02  0:01:23 1974k
 43  219M   43 96.4M    0     0  1549k      0  0:02:24  0:01:03  0:01:21 1945k
 44  219M   44 98.2M    0     0  1553k      0  0:02:24  0:01:04  0:01:20 1813k
 45  219M   45  100M    0     0  1557k      0  0:02:24  0:01:05  0:01:19 1883k
 46  219M   46  101M    0     0  1560k      0  0:02:23  0:01:06  0:01:17 1837k
 47  219M   47  103M    0     0  1564k      0  0:02:23  0:01:07  0:01:16 1779k
 48  219M   48  105M    0     0  1571k      0  0:02:22  0:01:08  0:01:14 1844k
 48  219M   48  107M    0     0  1570k      0  0:02:23  0:01:09  0:01:14 1792k
 49  219M   49  108M    0     0  1574k      0  0:02:22  0:01:10  0:01:12 1798k
 50  219M   50  111M    0     0  1586k      0  0:02:21  0:01:11  0:01:10 1934k
 51  219M   51  112M    0     0  1585k      0  0:02:21  0:01:12  0:01:09 1878k
 52  219M   52  114M    0     0  1589k      0  0:02:21  0:01:13  0:01:08 1836k
 53  219M   53  116M    0     0  1599k      0  0:02:20  0:01:14  0:01:06 2005k
 54  219M   54  118M    0     0  1601k      0  0:02:20  0:01:15  0:01:05 1984k
 54  219M   54  120M    0     0  1604k      0  0:02:20  0:01:16  0:01:04 1853k
 55  219M   55  122M    0     0  1613k      0  0:02:19  0:01:17  0:01:02 2018k
 55  219M   55  122M    0     0  1596k      0  0:02:20  0:01:18  0:01:02 1698k
 56  219M   56  123M    0     0  1579k      0  0:02:22  0:01:19  0:01:03 1277k
 56  219M   56  123M    0     0  1565k      0  0:02:23  0:01:20  0:01:03 1026k
 56  219M   56  124M    0     0  1554k      0  0:02:24  0:01:21  0:01:03  789k
 56  219M   56  124M    0     0  1546k      0  0:02:25  0:01:22  0:01:03  492k
 57  219M   57  126M    0     0  1545k      0  0:02:25  0:01:23  0:01:02  753k
 58  219M   58  128M    0     0  1547k      0  0:02:25  0:01:24  0:01:01 1040k
 59  219M   59  129M    0     0  1547k      0  0:02:25  0:01:25  0:01:00 1247k
 59  219M   59  131M    0     0  1549k      0  0:02:24  0:01:26  0:00:58 1479k
 60  219M   60  133M    0     0  1554k      0  0:02:24  0:01:27  0:00:57 1698k
 61  219M   61  134M    0     0  1556k      0  0:02:24  0:01:28  0:00:56 1745k
 62  219M   62  136M    0     0  1559k      0  0:02:24  0:01:29  0:00:55 1762k
 63  219M   63  138M    0     0  1561k      0  0:02:23  0:01:30  0:00:53 1814k
 63  219M   63  140M    0     0  1564k      0  0:02:23  0:01:31  0:00:52 1816k
 64  219M   64  141M    0     0  1566k      0  0:02:23  0:01:32  0:00:51 1778k
 65  219M   65  144M    0     0  1573k      0  0:02:22  0:01:33  0:00:49 1860k
 66  219M   66  145M    0     0  1571k      0  0:02:22  0:01:34  0:00:48 1778k
 67  219M   67  147M    0     0  1573k      0  0:02:22  0:01:35  0:00:47 1787k
 68  219M   68  149M    0     0  1581k      0  0:02:22  0:01:36  0:00:46 1888k
 68  219M   68  151M    0     0  1582k      0  0:02:21  0:01:37  0:00:44 1876k
 69  219M   69  152M    0     0  1585k      0  0:02:21  0:01:38  0:00:43 1814k
 70  219M   70  155M    0     0  1591k      0  0:02:21  0:01:39  0:00:42 1980k
 71  219M   71  157M    0     0  1597k      0  0:02:20  0:01:40  0:00:40 2063k
 72  219M   72  158M    0     0  1597k      0  0:02:20  0:01:41  0:00:39 1910k
 73  219M   73  160M    0     0  1601k      0  0:02:20  0:01:42  0:00:38 1962k
 74  219M   74  163M    0     0  1605k      0  0:02:19  0:01:43  0:00:36 1993k
 74  219M   74  163M    0     0  1596k      0  0:02:20  0:01:44  0:00:36 1690k
 74  219M   74  164M    0     0  1588k      0  0:02:21  0:01:45  0:00:36 1394k
 75  219M   75  164M    0     0  1581k      0  0:02:22  0:01:46  0:00:36 1255k
 75  219M   75  165M    0     0  1575k      0  0:02:22  0:01:47  0:00:35 1046k
 76  219M   76  167M    0     0  1572k      0  0:02:22  0:01:48  0:00:34  849k
 76  219M   76  168M    0     0  1574k      0  0:02:22  0:01:49  0:00:33 1115k
 77  219M   77  170M    0     0  1574k      0  0:02:22  0:01:50  0:00:32 1287k
 78  219M   78  172M    0     0  1577k      0  0:02:22  0:01:51  0:00:31 1498k
 79  219M   79  174M    0     0  1581k      0  0:02:21  0:01:52  0:00:29 1714k
 80  219M   80  175M    0     0  1582k      0  0:02:21  0:01:53  0:00:28 1806k
 80  219M   80  177M    0     0  1584k      0  0:02:21  0:01:54  0:00:27 1817k
 81  219M   81  179M    0     0  1586k      0  0:02:21  0:01:55  0:00:26 1834k
 82  219M   82  181M    0     0  1587k      0  0:02:21  0:01:56  0:00:25 1811k
 83  219M   83  182M    0     0  1589k      0  0:02:21  0:01:57  0:00:24 1762k
 84  219M   84  184M    0     0  1593k      0  0:02:20  0:01:58  0:00:22 1842k
 84  219M   84  186M    0     0  1593k      0  0:02:20  0:01:59  0:00:21 1788k
 85  219M   85  188M    0     0  1595k      0  0:02:20  0:02:00  0:00:20 1805k
 86  219M   86  190M    0     0  1602k      0  0:02:20  0:02:01  0:00:19 1933k
 87  219M   87  192M    0     0  1609k      0  0:02:19  0:02:02  0:00:17 2070k
 89  219M   89  195M    0     0  1615k      0  0:02:18  0:02:03  0:00:15 2144k
 89  219M   89  196M    0     0  1615k      0  0:02:19  0:02:04  0:00:15 2153k
 90  219M   90  198M    0     0  1613k      0  0:02:19  0:02:05  0:00:14 2063k
 91  219M   91  199M    0     0  1614k      0  0:02:19  0:02:06  0:00:13 1921k
 91  219M   91  201M    0     0  1616k      0  0:02:18  0:02:07  0:00:11 1785k
 92  219M   92  203M    0     0  1617k      0  0:02:18  0:02:08  0:00:10 1654k
 93  219M   93  205M    0     0  1618k      0  0:02:18  0:02:09  0:00:09 1687k
 94  219M   94  206M    0     0  1619k      0  0:02:18  0:02:10  0:00:08 1770k
 95  219M   95  208M    0     0  1621k      0  0:02:18  0:02:11  0:00:07 1788k
 95  219M   95  210M    0     0  1621k      0  0:02:18  0:02:12  0:00:06 1769k
 96  219M   96  211M    0     0  1622k      0  0:02:18  0:02:13  0:00:05 1755k
 97  219M   97  214M    0     0  1627k      0  0:02:18  0:02:14  0:00:04 1852k
 98  219M   98  215M    0     0  1627k      0  0:02:18  0:02:15  0:00:03 1822k
 99  219M   99  217M    0     0  1628k      0  0:02:17  0:02:16  0:00:01 1816k
 99  219M   99  218M    0     0  1627k      0  0:02:17  0:02:17 --:--:-- 1781k
100  219M  100  219M    0     0  1627k      0  0:02:17  0:02:17 --:--:-- 1795k
+ tar xzvf spark-2.4.3-bin-hadoop2.7.tgz
spark-2.4.3-bin-hadoop2.7/
spark-2.4.3-bin-hadoop2.7/python/
spark-2.4.3-bin-hadoop2.7/python/setup.cfg
spark-2.4.3-bin-hadoop2.7/python/pyspark/
spark-2.4.3-bin-hadoop2.7/python/pyspark/resultiterable.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/python/
spark-2.4.3-bin-hadoop2.7/python/pyspark/python/pyspark/
spark-2.4.3-bin-hadoop2.7/python/pyspark/python/pyspark/shell.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/heapq3.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/join.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/version.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/rdd.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/java_gateway.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/find_spark_home.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/_globals.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/worker.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/accumulators.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/mllib/
spark-2.4.3-bin-hadoop2.7/python/pyspark/mllib/feature.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/mllib/random.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/mllib/recommendation.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/mllib/fpm.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/mllib/classification.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/mllib/stat/
spark-2.4.3-bin-hadoop2.7/python/pyspark/mllib/stat/KernelDensity.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/mllib/stat/distribution.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/mllib/stat/test.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/mllib/stat/_statistics.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/mllib/stat/__init__.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/mllib/util.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/mllib/regression.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/mllib/clustering.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/mllib/linalg/
spark-2.4.3-bin-hadoop2.7/python/pyspark/mllib/linalg/distributed.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/mllib/linalg/__init__.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/mllib/tree.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/mllib/__init__.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/mllib/evaluation.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/mllib/common.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/mllib/tests.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/util.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/test_broadcast.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/shell.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/ml/
spark-2.4.3-bin-hadoop2.7/python/pyspark/ml/feature.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/ml/recommendation.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/ml/fpm.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/ml/classification.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/ml/stat.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/ml/util.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/ml/tuning.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/ml/regression.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/ml/base.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/ml/clustering.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/ml/wrapper.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/ml/pipeline.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/ml/linalg/
spark-2.4.3-bin-hadoop2.7/python/pyspark/ml/linalg/__init__.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/ml/param/
spark-2.4.3-bin-hadoop2.7/python/pyspark/ml/param/_shared_params_code_gen.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/ml/param/shared.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/ml/param/__init__.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/ml/__init__.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/ml/evaluation.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/ml/common.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/ml/tests.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/ml/image.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/test_serializers.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/cloudpickle.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/serializers.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/daemon.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/files.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/rddsampler.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/statcounter.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/streaming/
spark-2.4.3-bin-hadoop2.7/python/pyspark/streaming/kafka.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/streaming/util.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/streaming/kinesis.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/streaming/flume.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/streaming/__init__.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/streaming/context.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/streaming/tests.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/streaming/dstream.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/streaming/listener.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/taskcontext.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/__init__.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/storagelevel.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/broadcast.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/profiler.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/traceback_utils.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/context.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/status.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/sql/
spark-2.4.3-bin-hadoop2.7/python/pyspark/sql/streaming.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/sql/readwriter.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/sql/catalog.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/sql/session.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/sql/column.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/sql/functions.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/sql/dataframe.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/sql/window.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/sql/udf.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/sql/__init__.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/sql/utils.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/sql/group.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/sql/context.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/sql/tests.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/sql/conf.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/sql/types.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/tests.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/conf.py
spark-2.4.3-bin-hadoop2.7/python/pyspark/shuffle.py
spark-2.4.3-bin-hadoop2.7/python/.gitignore
spark-2.4.3-bin-hadoop2.7/python/docs/
spark-2.4.3-bin-hadoop2.7/python/docs/epytext.py
spark-2.4.3-bin-hadoop2.7/python/docs/make2.bat
spark-2.4.3-bin-hadoop2.7/python/docs/pyspark.sql.rst
spark-2.4.3-bin-hadoop2.7/python/docs/make.bat
spark-2.4.3-bin-hadoop2.7/python/docs/index.rst
spark-2.4.3-bin-hadoop2.7/python/docs/_templates/
spark-2.4.3-bin-hadoop2.7/python/docs/_templates/layout.html
spark-2.4.3-bin-hadoop2.7/python/docs/_static/
spark-2.4.3-bin-hadoop2.7/python/docs/_static/pyspark.js
spark-2.4.3-bin-hadoop2.7/python/docs/_static/pyspark.css
spark-2.4.3-bin-hadoop2.7/python/docs/pyspark.ml.rst
spark-2.4.3-bin-hadoop2.7/python/docs/pyspark.streaming.rst
spark-2.4.3-bin-hadoop2.7/python/docs/conf.py
spark-2.4.3-bin-hadoop2.7/python/docs/pyspark.mllib.rst
spark-2.4.3-bin-hadoop2.7/python/docs/pyspark.rst
spark-2.4.3-bin-hadoop2.7/python/docs/Makefile
spark-2.4.3-bin-hadoop2.7/python/test_coverage/
spark-2.4.3-bin-hadoop2.7/python/test_coverage/conf/
spark-2.4.3-bin-hadoop2.7/python/test_coverage/conf/spark-defaults.conf
spark-2.4.3-bin-hadoop2.7/python/test_coverage/sitecustomize.py
spark-2.4.3-bin-hadoop2.7/python/test_coverage/coverage_daemon.py
spark-2.4.3-bin-hadoop2.7/python/run-tests-with-coverage
spark-2.4.3-bin-hadoop2.7/python/pyspark.egg-info/
spark-2.4.3-bin-hadoop2.7/python/pyspark.egg-info/top_level.txt
spark-2.4.3-bin-hadoop2.7/python/pyspark.egg-info/dependency_links.txt
spark-2.4.3-bin-hadoop2.7/python/pyspark.egg-info/requires.txt
spark-2.4.3-bin-hadoop2.7/python/pyspark.egg-info/PKG-INFO
spark-2.4.3-bin-hadoop2.7/python/pyspark.egg-info/SOURCES.txt
spark-2.4.3-bin-hadoop2.7/python/MANIFEST.in
spark-2.4.3-bin-hadoop2.7/python/test_support/
spark-2.4.3-bin-hadoop2.7/python/test_support/userlibrary.py
spark-2.4.3-bin-hadoop2.7/python/test_support/userlib-0.1.zip
spark-2.4.3-bin-hadoop2.7/python/test_support/SimpleHTTPServer.py
spark-2.4.3-bin-hadoop2.7/python/test_support/hello/
spark-2.4.3-bin-hadoop2.7/python/test_support/hello/sub_hello/
spark-2.4.3-bin-hadoop2.7/python/test_support/hello/sub_hello/sub_hello.txt
spark-2.4.3-bin-hadoop2.7/python/test_support/hello/hello.txt
spark-2.4.3-bin-hadoop2.7/python/test_support/sql/
spark-2.4.3-bin-hadoop2.7/python/test_support/sql/people_array.json
spark-2.4.3-bin-hadoop2.7/python/test_support/sql/text-test.txt
spark-2.4.3-bin-hadoop2.7/python/test_support/sql/ages_newlines.csv
spark-2.4.3-bin-hadoop2.7/python/test_support/sql/people.json
spark-2.4.3-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/
spark-2.4.3-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2014/
spark-2.4.3-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2014/month=9/
spark-2.4.3-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2014/month=9/day=1/
spark-2.4.3-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2014/month=9/day=1/part-r-00008.gz.parquet
spark-2.4.3-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2014/month=9/day=1/.part-r-00008.gz.parquet.crc
spark-2.4.3-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2015/
spark-2.4.3-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2015/month=10/
spark-2.4.3-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2015/month=10/day=26/
spark-2.4.3-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2015/month=10/day=26/part-r-00005.gz.parquet
spark-2.4.3-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2015/month=10/day=26/.part-r-00005.gz.parquet.crc
spark-2.4.3-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2015/month=10/day=25/
spark-2.4.3-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2015/month=10/day=25/.part-r-00002.gz.parquet.crc
spark-2.4.3-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2015/month=10/day=25/part-r-00002.gz.parquet
spark-2.4.3-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2015/month=10/day=25/part-r-00004.gz.parquet
spark-2.4.3-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2015/month=10/day=25/.part-r-00004.gz.parquet.crc
spark-2.4.3-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2015/month=9/
spark-2.4.3-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2015/month=9/day=1/
spark-2.4.3-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2015/month=9/day=1/.part-r-00007.gz.parquet.crc
spark-2.4.3-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2015/month=9/day=1/part-r-00007.gz.parquet
spark-2.4.3-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/_common_metadata
spark-2.4.3-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/_metadata
spark-2.4.3-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/_SUCCESS
spark-2.4.3-bin-hadoop2.7/python/test_support/sql/streaming/
spark-2.4.3-bin-hadoop2.7/python/test_support/sql/streaming/text-test.txt
spark-2.4.3-bin-hadoop2.7/python/test_support/sql/ages.csv
spark-2.4.3-bin-hadoop2.7/python/test_support/sql/people1.json
spark-2.4.3-bin-hadoop2.7/python/test_support/sql/orc_partitioned/
spark-2.4.3-bin-hadoop2.7/python/test_support/sql/orc_partitioned/b=0/
spark-2.4.3-bin-hadoop2.7/python/test_support/sql/orc_partitioned/b=0/c=0/
spark-2.4.3-bin-hadoop2.7/python/test_support/sql/orc_partitioned/b=0/c=0/part-r-00000-829af031-b970-49d6-ad39-30460a0be2c8.orc
spark-2.4.3-bin-hadoop2.7/python/test_support/sql/orc_partitioned/b=0/c=0/.part-r-00000-829af031-b970-49d6-ad39-30460a0be2c8.orc.crc
spark-2.4.3-bin-hadoop2.7/python/test_support/sql/orc_partitioned/_SUCCESS
spark-2.4.3-bin-hadoop2.7/python/test_support/sql/orc_partitioned/b=1/
spark-2.4.3-bin-hadoop2.7/python/test_support/sql/orc_partitioned/b=1/c=1/
spark-2.4.3-bin-hadoop2.7/python/test_support/sql/orc_partitioned/b=1/c=1/part-r-00000-829af031-b970-49d6-ad39-30460a0be2c8.orc
spark-2.4.3-bin-hadoop2.7/python/test_support/sql/orc_partitioned/b=1/c=1/.part-r-00000-829af031-b970-49d6-ad39-30460a0be2c8.orc.crc
spark-2.4.3-bin-hadoop2.7/python/test_support/sql/people_array_utf16le.json
spark-2.4.3-bin-hadoop2.7/python/run-tests.py
spark-2.4.3-bin-hadoop2.7/python/run-tests
spark-2.4.3-bin-hadoop2.7/python/.coveragerc
spark-2.4.3-bin-hadoop2.7/python/lib/
spark-2.4.3-bin-hadoop2.7/python/lib/pyspark.zip
spark-2.4.3-bin-hadoop2.7/python/lib/PY4J_LICENSE.txt
spark-2.4.3-bin-hadoop2.7/python/lib/py4j-0.10.7-src.zip
spark-2.4.3-bin-hadoop2.7/python/setup.py
spark-2.4.3-bin-hadoop2.7/python/README.md
spark-2.4.3-bin-hadoop2.7/python/dist/
spark-2.4.3-bin-hadoop2.7/python/pylintrc
spark-2.4.3-bin-hadoop2.7/conf/
spark-2.4.3-bin-hadoop2.7/conf/fairscheduler.xml.template
spark-2.4.3-bin-hadoop2.7/conf/spark-defaults.conf.template
spark-2.4.3-bin-hadoop2.7/conf/docker.properties.template
spark-2.4.3-bin-hadoop2.7/conf/log4j.properties.template
spark-2.4.3-bin-hadoop2.7/conf/metrics.properties.template
spark-2.4.3-bin-hadoop2.7/conf/slaves.template
spark-2.4.3-bin-hadoop2.7/conf/spark-env.sh.template
spark-2.4.3-bin-hadoop2.7/licenses/
spark-2.4.3-bin-hadoop2.7/licenses/LICENSE-heapq.txt
spark-2.4.3-bin-hadoop2.7/licenses/LICENSE-paranamer.txt
spark-2.4.3-bin-hadoop2.7/licenses/LICENSE-graphlib-dot.txt
spark-2.4.3-bin-hadoop2.7/licenses/LICENSE-minlog.txt
spark-2.4.3-bin-hadoop2.7/licenses/LICENSE-slf4j.txt
spark-2.4.3-bin-hadoop2.7/licenses/LICENSE-jquery.txt
spark-2.4.3-bin-hadoop2.7/licenses/LICENSE-scopt.txt
spark-2.4.3-bin-hadoop2.7/licenses/LICENSE-vis.txt
spark-2.4.3-bin-hadoop2.7/licenses/LICENSE-sbt-launch-lib.txt
spark-2.4.3-bin-hadoop2.7/licenses/LICENSE-spire.txt
spark-2.4.3-bin-hadoop2.7/licenses/LICENSE-matchMedia-polyfill.txt
spark-2.4.3-bin-hadoop2.7/licenses/LICENSE-kryo.txt
spark-2.4.3-bin-hadoop2.7/licenses/LICENSE-mustache.txt
spark-2.4.3-bin-hadoop2.7/licenses/LICENSE-arpack.txt
spark-2.4.3-bin-hadoop2.7/licenses/LICENSE-scala.txt
spark-2.4.3-bin-hadoop2.7/licenses/LICENSE-javassist.html
spark-2.4.3-bin-hadoop2.7/licenses/LICENSE-json-formatter.txt
spark-2.4.3-bin-hadoop2.7/licenses/LICENSE-jodd.txt
spark-2.4.3-bin-hadoop2.7/licenses/LICENSE-automaton.txt
spark-2.4.3-bin-hadoop2.7/licenses/LICENSE-janino.txt
spark-2.4.3-bin-hadoop2.7/licenses/LICENSE-dagre-d3.txt
spark-2.4.3-bin-hadoop2.7/licenses/LICENSE-sorttable.js.txt
spark-2.4.3-bin-hadoop2.7/licenses/LICENSE-py4j.txt
spark-2.4.3-bin-hadoop2.7/licenses/LICENSE-d3.min.js.txt
spark-2.4.3-bin-hadoop2.7/licenses/LICENSE-respond.txt
spark-2.4.3-bin-hadoop2.7/licenses/LICENSE-CC0.txt
spark-2.4.3-bin-hadoop2.7/licenses/LICENSE-zstd.txt
spark-2.4.3-bin-hadoop2.7/licenses/LICENSE-cloudpickle.txt
spark-2.4.3-bin-hadoop2.7/licenses/LICENSE-pmml-model.txt
spark-2.4.3-bin-hadoop2.7/licenses/LICENSE-pyrolite.txt
spark-2.4.3-bin-hadoop2.7/licenses/LICENSE-netlib.txt
spark-2.4.3-bin-hadoop2.7/licenses/LICENSE-AnchorJS.txt
spark-2.4.3-bin-hadoop2.7/licenses/LICENSE-modernizr.txt
spark-2.4.3-bin-hadoop2.7/licenses/LICENSE-machinist.txt
spark-2.4.3-bin-hadoop2.7/licenses/LICENSE-javolution.txt
spark-2.4.3-bin-hadoop2.7/licenses/LICENSE-xmlenc.txt
spark-2.4.3-bin-hadoop2.7/licenses/LICENSE-join.txt
spark-2.4.3-bin-hadoop2.7/licenses/LICENSE-jline.txt
spark-2.4.3-bin-hadoop2.7/licenses/LICENSE-antlr.txt
spark-2.4.3-bin-hadoop2.7/licenses/LICENSE-jtransforms.html
spark-2.4.3-bin-hadoop2.7/licenses/LICENSE-leveldbjni.txt
spark-2.4.3-bin-hadoop2.7/licenses/LICENSE-protobuf.txt
spark-2.4.3-bin-hadoop2.7/licenses/LICENSE-bootstrap.txt
spark-2.4.3-bin-hadoop2.7/licenses/LICENSE-zstd-jni.txt
spark-2.4.3-bin-hadoop2.7/licenses/LICENSE-datatables.txt
spark-2.4.3-bin-hadoop2.7/licenses/LICENSE-f2j.txt
spark-2.4.3-bin-hadoop2.7/licenses/LICENSE-reflectasm.txt
spark-2.4.3-bin-hadoop2.7/sbin/
spark-2.4.3-bin-hadoop2.7/sbin/start-slave.sh
spark-2.4.3-bin-hadoop2.7/sbin/stop-history-server.sh
spark-2.4.3-bin-hadoop2.7/sbin/stop-slave.sh
spark-2.4.3-bin-hadoop2.7/sbin/stop-mesos-dispatcher.sh
spark-2.4.3-bin-hadoop2.7/sbin/start-all.sh
spark-2.4.3-bin-hadoop2.7/sbin/spark-daemon.sh
spark-2.4.3-bin-hadoop2.7/sbin/start-master.sh
spark-2.4.3-bin-hadoop2.7/sbin/spark-daemons.sh
spark-2.4.3-bin-hadoop2.7/sbin/spark-config.sh
spark-2.4.3-bin-hadoop2.7/sbin/start-slaves.sh
spark-2.4.3-bin-hadoop2.7/sbin/start-mesos-shuffle-service.sh
spark-2.4.3-bin-hadoop2.7/sbin/start-history-server.sh
spark-2.4.3-bin-hadoop2.7/sbin/start-shuffle-service.sh
spark-2.4.3-bin-hadoop2.7/sbin/slaves.sh
spark-2.4.3-bin-hadoop2.7/sbin/stop-slaves.sh
spark-2.4.3-bin-hadoop2.7/sbin/stop-thriftserver.sh
spark-2.4.3-bin-hadoop2.7/sbin/stop-master.sh
spark-2.4.3-bin-hadoop2.7/sbin/stop-shuffle-service.sh
spark-2.4.3-bin-hadoop2.7/sbin/start-mesos-dispatcher.sh
spark-2.4.3-bin-hadoop2.7/sbin/stop-mesos-shuffle-service.sh
spark-2.4.3-bin-hadoop2.7/sbin/start-thriftserver.sh
spark-2.4.3-bin-hadoop2.7/sbin/stop-all.sh
spark-2.4.3-bin-hadoop2.7/kubernetes/
spark-2.4.3-bin-hadoop2.7/kubernetes/tests/
spark-2.4.3-bin-hadoop2.7/kubernetes/tests/pyfiles.py
spark-2.4.3-bin-hadoop2.7/kubernetes/tests/worker_memory_check.py
spark-2.4.3-bin-hadoop2.7/kubernetes/tests/py_container_checks.py
spark-2.4.3-bin-hadoop2.7/kubernetes/dockerfiles/
spark-2.4.3-bin-hadoop2.7/kubernetes/dockerfiles/spark/
spark-2.4.3-bin-hadoop2.7/kubernetes/dockerfiles/spark/Dockerfile
spark-2.4.3-bin-hadoop2.7/kubernetes/dockerfiles/spark/bindings/
spark-2.4.3-bin-hadoop2.7/kubernetes/dockerfiles/spark/bindings/python/
spark-2.4.3-bin-hadoop2.7/kubernetes/dockerfiles/spark/bindings/python/Dockerfile
spark-2.4.3-bin-hadoop2.7/kubernetes/dockerfiles/spark/bindings/R/
spark-2.4.3-bin-hadoop2.7/kubernetes/dockerfiles/spark/bindings/R/Dockerfile
spark-2.4.3-bin-hadoop2.7/kubernetes/dockerfiles/spark/entrypoint.sh
spark-2.4.3-bin-hadoop2.7/jars/
spark-2.4.3-bin-hadoop2.7/jars/commons-lang3-3.5.jar
spark-2.4.3-bin-hadoop2.7/jars/spark-kubernetes_2.11-2.4.3.jar
spark-2.4.3-bin-hadoop2.7/jars/arrow-format-0.10.0.jar
spark-2.4.3-bin-hadoop2.7/jars/spark-streaming_2.11-2.4.3.jar
spark-2.4.3-bin-hadoop2.7/jars/hadoop-yarn-common-2.7.3.jar
spark-2.4.3-bin-hadoop2.7/jars/hadoop-mapreduce-client-jobclient-2.7.3.jar
spark-2.4.3-bin-hadoop2.7/jars/json4s-jackson_2.11-3.5.3.jar
spark-2.4.3-bin-hadoop2.7/jars/jersey-container-servlet-2.22.2.jar
spark-2.4.3-bin-hadoop2.7/jars/hive-jdbc-1.2.1.spark2.jar
spark-2.4.3-bin-hadoop2.7/jars/spark-network-common_2.11-2.4.3.jar
spark-2.4.3-bin-hadoop2.7/jars/curator-framework-2.7.1.jar
spark-2.4.3-bin-hadoop2.7/jars/pyrolite-4.13.jar
spark-2.4.3-bin-hadoop2.7/jars/bonecp-0.8.0.RELEASE.jar
spark-2.4.3-bin-hadoop2.7/jars/hppc-0.7.2.jar
spark-2.4.3-bin-hadoop2.7/jars/spark-network-shuffle_2.11-2.4.3.jar
spark-2.4.3-bin-hadoop2.7/jars/metrics-jvm-3.1.5.jar
spark-2.4.3-bin-hadoop2.7/jars/jersey-guava-2.22.2.jar
spark-2.4.3-bin-hadoop2.7/jars/guice-3.0.jar
spark-2.4.3-bin-hadoop2.7/jars/super-csv-2.2.0.jar
spark-2.4.3-bin-hadoop2.7/jars/jsp-api-2.1.jar
spark-2.4.3-bin-hadoop2.7/jars/commons-net-3.1.jar
spark-2.4.3-bin-hadoop2.7/jars/validation-api-1.1.0.Final.jar
spark-2.4.3-bin-hadoop2.7/jars/json4s-ast_2.11-3.5.3.jar
spark-2.4.3-bin-hadoop2.7/jars/spark-repl_2.11-2.4.3.jar
spark-2.4.3-bin-hadoop2.7/jars/spark-sketch_2.11-2.4.3.jar
spark-2.4.3-bin-hadoop2.7/jars/javax.inject-1.jar
spark-2.4.3-bin-hadoop2.7/jars/hadoop-mapreduce-client-shuffle-2.7.3.jar
spark-2.4.3-bin-hadoop2.7/jars/orc-mapreduce-1.5.5-nohive.jar
spark-2.4.3-bin-hadoop2.7/jars/avro-ipc-1.8.2.jar
spark-2.4.3-bin-hadoop2.7/jars/parquet-encoding-1.10.1.jar
spark-2.4.3-bin-hadoop2.7/jars/jersey-container-servlet-core-2.22.2.jar
spark-2.4.3-bin-hadoop2.7/jars/zjsonpatch-0.3.0.jar
spark-2.4.3-bin-hadoop2.7/jars/scala-compiler-2.11.12.jar
spark-2.4.3-bin-hadoop2.7/jars/curator-client-2.7.1.jar
spark-2.4.3-bin-hadoop2.7/jars/jersey-media-jaxb-2.22.2.jar
spark-2.4.3-bin-hadoop2.7/jars/avro-mapred-1.8.2-hadoop2.jar
spark-2.4.3-bin-hadoop2.7/jars/antlr4-runtime-4.7