Build #3157

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ghprbActualCommite6332ef5bac0dc6ce37cb840631c62f3e67a8351
ghprbActualCommitAuthorRahamim, Ben
ghprbActualCommitAuthorEmailbrahamim@paypal.com
ghprbAuthorRepoGitUrlhttps://github.com/benraha/adam.git
ghprbCommentBodyJenkins, test this please
ghprbCredentialsIdb7d94526-9e9b-435f-9275-d7dbf209f4a3
ghprbGhRepositorybigdatagenomics/adam
ghprbPullAuthorLoginbenraha
ghprbPullAuthorLoginMention@benraha
ghprbPullDescriptionGitHub pull request #2282 of commit e6332ef5bac0dc6ce37cb840631c62f3e67a8351, has merge conflicts.
ghprbPullId2282
ghprbPullLinkhttps://github.com/bigdatagenomics/adam/pull/2282
ghprbPullLongDescriptionThis PR adds an option to avoid shuffling the entire alignment dataset when transforming to FragmentDataset.\r\n\r\nThis adds a boolean parameter to the function toFragments() that, when specified, the FragmentDataset is created with one read per Fragment record.\r\n\r\nThis resolved issue #2281 .
ghprbPullTitleAdded an optimisation to spare not required shuffle of unpaired reads
ghprbSourceBranchunpaired-optimisation
ghprbTargetBranchmaster
ghprbTriggerAuthorLoginbenraha
ghprbTriggerAuthorLoginMention@benraha
sha1e6332ef5bac0dc6ce37cb840631c62f3e67a8351