Test Result : VariantContextDatasetSuite

0 failures (±0) , 1 skipped (±0)
28 tests (±0)
Took 16 sec.

All Tests

Test nameDurationStatus
can write as a single file via full saveAsVcf method, then read in .vcf file0.39 secPassed
can write as a single file via simple saveAsVcf method, then read in .vcf file0.34 secPassed
can write, then read in .vcf file0.37 secPassed
can't save file with non-vcf extension0.15 secPassed
don't lose any non-default VCF header lines or attributes when piping as VCF0.63 secPassed
don't lose any variants when piping as VCF0.5 secPassed
load a gvcf with a missing info field set to .0.26 secPassed
pipe works with empty partitions0.44 secPassed
read a vcf file with multi-allelic variants to split0.44 secPassed
save a file sorted by contig index0.41 secPassed
save a lexicographically sorted file0.39 secPassed
save a multiallelic gvcf0 msSkipped
save and reload from partitioned parquet4.7 secPassed
save bgzip vcf as single file0.37 secPassed
save sharded bgzip vcf0.61 secPassed
support VCFs with +Inf/-Inf float values0.27 secPassed
support VCFs with `nan` instead of `NaN` float values0.26 secPassed
test metadata0.12 secPassed
transform a vcf file with bad header0.56 secPassed
transform dataset via java API2 secPassed
transform variant contexts to coverage genomic dataset0.34 secPassed
transform variant contexts to feature genomic dataset0.37 secPassed
transform variant contexts to fragment genomic dataset0.43 secPassed
transform variant contexts to genotype genomic dataset0.48 secPassed
transform variant contexts to read genomic dataset0.44 secPassed
transform variant contexts to slice genomic dataset0.39 secPassed
transform variant contexts to variant genomic dataset0.42 secPassed
union two variant context genomic datasets together0.33 secPassed