Test Result : GenotypeDatasetSuite

0 failures (±0)
42 tests (±0)
Took 41 sec.

All Tests

Test nameDurationStatus
convert back to variant contexts0.3 secPassed
filter RDD bound genotypes by alternate read depth0.17 secPassed
filter RDD bound genotypes by genotype quality0.19 secPassed
filter RDD bound genotypes by read depth0.17 secPassed
filter RDD bound genotypes by reference read depth0.19 secPassed
filter RDD bound genotypes by sample0.19 secPassed
filter RDD bound genotypes by samples0.2 secPassed
filter RDD bound genotypes to genotype filters passed0.21 secPassed
filter RDD bound no call genotypes0.17 secPassed
filter dataset bound genotypes by alternate read depth0.83 secPassed
filter dataset bound genotypes by genotype quality0.91 secPassed
filter dataset bound genotypes by read depth0.95 secPassed
filter dataset bound genotypes by reference read depth0.77 secPassed
filter dataset bound genotypes by sample0.78 secPassed
filter dataset bound genotypes by samples0.85 secPassed
filter dataset bound genotypes to genotype filters passed0.89 secPassed
filter dataset no call genotypes1 secPassed
load parquet to sql, save, re-read from avro2.8 secPassed
loading genotypes then converting to variants yields same output as loading variants3.8 secPassed
round trip gVCF END attribute with nested variant annotations dataset bound2.1 secPassed
round trip gVCF END attribute with nested variant annotations rdd bound0.88 secPassed
round trip gVCF END attribute without nested variant annotations dataset bound2 secPassed
round trip gVCF END attribute without nested variant annotations rdd bound0.93 secPassed
round trip to parquet0.63 secPassed
round trip to partitioned parquet2.1 secPassed
transform dataset via java API1 secPassed
transform genotypes to coverage genomic dataset1 secPassed
transform genotypes to feature genomic dataset1.1 secPassed
transform genotypes to fragment genomic dataset1.2 secPassed
transform genotypes to read genomic dataset1.1 secPassed
transform genotypes to slice genomic dataset1 secPassed
transform genotypes to variant context genomic dataset0.15 secPassed
transform genotypes to variant genomic dataset1.3 secPassed
union two genotype genomic datasets together0.32 secPassed
use broadcast join to pull down genotypes mapped to targets0.42 secPassed
use full outer shuffle join to pull down genotypes mapped to targets1.2 secPassed
use left outer shuffle join to pull down genotypes mapped to targets1 secPassed
use right outer broadcast join to pull down genotypes mapped to targets0.48 secPassed
use right outer shuffle join to pull down genotypes mapped to targets1.3 secPassed
use right outer shuffle join with group by to pull down genotypes mapped to targets1.2 secPassed
use shuffle join to pull down genotypes mapped to targets1.5 secPassed
use shuffle join with group by to pull down genotypes mapped to targets1.2 secPassed