Started by upstream project "ADAM-prb" build number 3052 originally caused by: GitHub pull request #2205 of commit 79c8adcefa16d332e5fd1670fcce5dc229ec1894 automatically merged. [EnvInject] - Loading node environment variables. Building remotely on research-jenkins-worker-09 (ubuntu ubuntu-gpu research-09 ubuntu-avx2) in workspace /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu Wiping out workspace first. Cloning the remote Git repository Cloning repository https://github.com/bigdatagenomics/adam.git > git init /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu # timeout=10 Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/heads/*:refs/remotes/origin/* # timeout=15 > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10 Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/*:refs/remotes/origin/pr/* # timeout=15 Checking out Revision 0173e7feb1e06030b4052d9acaeb3853650f42ea (origin/pr/2205/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f 0173e7feb1e06030b4052d9acaeb3853650f42ea First time build. Skipping changelog. [ubuntu] $ /bin/bash /tmp/hudson4465072134448508328.sh + set -e + unset SPARK_TESTING + export JAVA_HOME=/usr/lib/jvm/java-8-oracle + JAVA_HOME=/usr/lib/jvm/java-8-oracle + export CONDA_BIN=/home/anaconda/bin/ + CONDA_BIN=/home/anaconda/bin/ + export PATH=/usr/lib/jvm/java-8-oracle/bin/:/home/anaconda/bin/:/home/jenkins/gems/bin:/usr/local/go/bin:/home/jenkins/go-projects/bin:/home/jenkins/anaconda2/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games + PATH=/usr/lib/jvm/java-8-oracle/bin/:/home/anaconda/bin/:/home/jenkins/gems/bin:/usr/local/go/bin:/home/jenkins/go-projects/bin:/home/jenkins/anaconda2/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games + set +x + /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/scripts/jenkins-test # make a tempdir for writing maven cruft to ADAM_MVN_TMP_DIR=$(mktemp -d -t adamTestMvnXXXXXXX) mktemp -d -t adamTestMvnXXXXXXX ++ mktemp -d -t adamTestMvnXXXXXXX + ADAM_MVN_TMP_DIR=/tmp/adamTestMvnb0spyFX # add this tempdir to the poms... find . -name pom.xml \ -exec sed -i.bak \ -e "s:sun.io.serialization.extendedDebugInfo=true:sun.io.serialization.extendedDebugInfo=true -Djava.io.tmpdir=${ADAM_MVN_TMP_DIR}:g" \ {} \; + find . -name pom.xml -exec sed -i.bak -e 's:sun.io.serialization.extendedDebugInfo=true:sun.io.serialization.extendedDebugInfo=true -Djava.io.tmpdir=/tmp/adamTestMvnb0spyFX:g' '{}' ';' find . -name "*.bak" -exec rm -f {} \; + find . -name '*.bak' -exec rm -f '{}' ';' # variable declarations export PATH=${JAVA_HOME}/bin/:${PATH} + export PATH=/usr/lib/jvm/java-8-oracle/bin/:/usr/lib/jvm/java-8-oracle/bin/:/home/anaconda/bin/:/home/jenkins/gems/bin:/usr/local/go/bin:/home/jenkins/go-projects/bin:/home/jenkins/anaconda2/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games + PATH=/usr/lib/jvm/java-8-oracle/bin/:/usr/lib/jvm/java-8-oracle/bin/:/home/anaconda/bin/:/home/jenkins/gems/bin:/usr/local/go/bin:/home/jenkins/go-projects/bin:/home/jenkins/anaconda2/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games export MAVEN_OPTS="-Xmx1536m -XX:MaxPermSize=1g -Dfile.encoding=utf-8" + export 'MAVEN_OPTS=-Xmx1536m -XX:MaxPermSize=1g -Dfile.encoding=utf-8' + MAVEN_OPTS='-Xmx1536m -XX:MaxPermSize=1g -Dfile.encoding=utf-8' DIR=$( cd $( dirname ${BASH_SOURCE[0]} ) && pwd ) cd $( dirname ${BASH_SOURCE[0]} ) && pwd dirname ${BASH_SOURCE[0]} +++ dirname /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/scripts/jenkins-test ++ cd /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/scripts ++ pwd + DIR=/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/scripts PROJECT_ROOT=${DIR}/.. + PROJECT_ROOT=/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/scripts/.. VERSION=$(grep "" ${PROJECT_ROOT}/pom.xml | head -2 | tail -1 | sed 's/ *//g' | sed 's/<\/version>//g') grep "" ${PROJECT_ROOT}/pom.xml | head -2 | tail -1 | sed 's/ *//g' | sed 's/<\/version>//g' ++ grep '' /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/scripts/../pom.xml ++ head -2 ++ tail -1 ++ sed 's/ *//g' ++ sed 's/<\/version>//g' + VERSION=0.29.0-SNAPSHOT # is the hadoop version set? if ! [[ ${HADOOP_VERSION} ]]; then echo "HADOOP_VERSION environment variable is not set." echo "Please set this variable before running." exit 1 fi + [[ -n 2.7.5 ]] # is the spark version set? if ! [[ ${SPARK_VERSION} ]]; then echo "SPARK_VERSION environment variable is not set." echo "Please set this variable before running." exit 1 fi + [[ -n 2.4.4 ]] set -e + set -e # build defaults to Scala 2.11 if [ ${SCALAVER} == 2.11 ]; then # shouldn't be able to move to scala 2.11 twice set +e ./scripts/move_to_scala_2.11.sh if [[ $? == 0 ]]; then echo "We have already moved to Scala 2.11, so running move_to_scala_2.11.sh a second time should fail, but error code was 0 (success)." exit 1 fi set -e fi + '[' 2.11 == 2.11 ']' + set +e + ./scripts/move_to_scala_2.11.sh Scala version is already set to 2.11 (Scala artifacts have _2.11 version suffix in artifact name). Cowardly refusing to move to Scala 2.11 a second time... + [[ 1 == 0 ]] + set -e # move to Scala 2.12 if requested if [ ${SCALAVER} == 2.12 ]; then set +e ./scripts/move_to_scala_2.12.sh set -e fi + '[' 2.11 == 2.12 ']' # print versions echo "Testing ADAM version ${VERSION} on Spark ${SPARK_VERSION} and Hadoop ${HADOOP_VERSION}" + echo 'Testing ADAM version 0.29.0-SNAPSHOT on Spark 2.4.4 and Hadoop 2.7.5' Testing ADAM version 0.29.0-SNAPSHOT on Spark 2.4.4 and Hadoop 2.7.5 # first, build the sources, run the unit tests, and generate a coverage report mvn clean \ -Dhadoop.version=${HADOOP_VERSION} + mvn clean -Dhadoop.version=2.7.5 OpenJDK 64-Bit Server VM warning: ignoring option MaxPermSize=1g; support was removed in 8.0 [INFO] Scanning for projects... [INFO] ------------------------------------------------------------------------ [INFO] Reactor Build Order: [INFO] [INFO] ADAM_2.11 [INFO] ADAM_2.11: Shader workaround [INFO] ADAM_2.11: Avro-to-Dataset codegen utils [INFO] ADAM_2.11: Core [INFO] ADAM_2.11: APIs for Java, Python [INFO] ADAM_2.11: CLI [INFO] ADAM_2.11: Assembly [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building ADAM_2.11 0.29.0-SNAPSHOT [INFO] ------------------------------------------------------------------------ [INFO] [INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ adam-parent-spark2_2.11 --- [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building ADAM_2.11: Shader workaround 0.29.0-SNAPSHOT [INFO] ------------------------------------------------------------------------ [INFO] [INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ adam-shade-spark2_2.11 --- [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building ADAM_2.11: Avro-to-Dataset codegen utils 0.29.0-SNAPSHOT [INFO] ------------------------------------------------------------------------ [INFO] [INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ adam-codegen-spark2_2.11 --- [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building ADAM_2.11: Core 0.29.0-SNAPSHOT [INFO] ------------------------------------------------------------------------ [INFO] [INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ adam-core-spark2_2.11 --- [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building ADAM_2.11: APIs for Java, Python 0.29.0-SNAPSHOT [INFO] ------------------------------------------------------------------------ [INFO] [INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ adam-apis-spark2_2.11 --- [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building ADAM_2.11: CLI 0.29.0-SNAPSHOT [INFO] ------------------------------------------------------------------------ [INFO] [INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ adam-cli-spark2_2.11 --- [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building ADAM_2.11: Assembly 0.29.0-SNAPSHOT [INFO] ------------------------------------------------------------------------ [INFO] [INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ adam-assembly-spark2_2.11 --- [INFO] ------------------------------------------------------------------------ [INFO] Reactor Summary: [INFO] [INFO] ADAM_2.11 .......................................... SUCCESS [ 0.189 s] [INFO] ADAM_2.11: Shader workaround ....................... SUCCESS [ 0.008 s] [INFO] ADAM_2.11: Avro-to-Dataset codegen utils ........... SUCCESS [ 0.007 s] [INFO] ADAM_2.11: Core .................................... SUCCESS [ 0.011 s] [INFO] ADAM_2.11: APIs for Java, Python ................... SUCCESS [ 0.001 s] [INFO] ADAM_2.11: CLI ..................................... SUCCESS [ 0.023 s] [INFO] ADAM_2.11: Assembly ................................ SUCCESS [ 0.001 s] [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ [INFO] Total time: 0.454 s [INFO] Finished at: 2019-09-04T11:38:06-07:00 [INFO] Final Memory: 23M/1472M [INFO] ------------------------------------------------------------------------ # if this is a pull request, we need to set the coveralls pr id if [[ ! -z $ghprbPullId ]]; then COVERALLS_PRB_OPTION="-DpullRequest=${ghprbPullId}" fi + [[ ! -z 2205 ]] + COVERALLS_PRB_OPTION=-DpullRequest=2205 # coveralls token should not be visible set +x +v + set +x +v OpenJDK 64-Bit Server VM warning: ignoring option MaxPermSize=1g; support was removed in 8.0 [INFO] Scanning for projects... [INFO] ------------------------------------------------------------------------ [INFO] Reactor Build Order: [INFO] [INFO] ADAM_2.11 [INFO] ADAM_2.11: Shader workaround [INFO] ADAM_2.11: Avro-to-Dataset codegen utils [INFO] ADAM_2.11: Core [INFO] ADAM_2.11: APIs for Java, Python [INFO] ADAM_2.11: CLI [INFO] ADAM_2.11: Assembly [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building ADAM_2.11 0.29.0-SNAPSHOT [INFO] ------------------------------------------------------------------------ [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-parent-spark2_2.11 --- [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-parent-spark2_2.11 --- [INFO] [INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-parent-spark2_2.11 --- [INFO] Modified 0 of 240 .scala files [INFO] [INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-parent-spark2_2.11 --- [INFO] No sources to compile [INFO] [INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-parent-spark2_2.11 --- [INFO] No sources to compile [INFO] [INFO] >>> scoverage-maven-plugin:1.1.1:report (default-cli) > [scoverage]test @ adam-parent-spark2_2.11 >>> [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-parent-spark2_2.11 --- [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-parent-spark2_2.11 --- [INFO] [INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-parent-spark2_2.11 --- [INFO] Modified 0 of 240 .scala files [INFO] [INFO] --- scoverage-maven-plugin:1.1.1:pre-compile (default-cli) @ adam-parent-spark2_2.11 --- [INFO] Skipping SCoverage execution for project with packaging type 'pom' [INFO] [INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-parent-spark2_2.11 --- [INFO] No sources to compile [INFO] [INFO] --- scoverage-maven-plugin:1.1.1:post-compile (default-cli) @ adam-parent-spark2_2.11 --- [INFO] [INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-parent-spark2_2.11 --- [INFO] No sources to compile [INFO] [INFO] <<< scoverage-maven-plugin:1.1.1:report (default-cli) < [scoverage]test @ adam-parent-spark2_2.11 <<< [INFO] [INFO] --- scoverage-maven-plugin:1.1.1:report (default-cli) @ adam-parent-spark2_2.11 --- [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building ADAM_2.11: Shader workaround 0.29.0-SNAPSHOT [INFO] ------------------------------------------------------------------------ [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-shade-spark2_2.11 --- [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-shade-spark2_2.11 --- [INFO] [INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-shade-spark2_2.11 --- [INFO] Modified 0 of 0 .scala files [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-shade-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/src/main/resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-shade-spark2_2.11 --- [INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/src/main/java:-1: info: compiling [INFO] Compiling 1 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/target/2.11.12/classes at 1567622306808 [INFO] prepare-compile in 0 s [INFO] compile in 1 s [INFO] [INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-shade-spark2_2.11 --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 1 source file to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/target/2.11.12/classes [INFO] [INFO] --- plexus-component-metadata:1.5.5:generate-metadata (default) @ adam-shade-spark2_2.11 --- [INFO] Discovered 1 component descriptors(s) [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-shade-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/src/test/resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-shade-spark2_2.11 --- [INFO] No sources to compile [INFO] [INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-shade-spark2_2.11 --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-shade-spark2_2.11 --- [INFO] No tests to run. [INFO] [INFO] >>> scoverage-maven-plugin:1.1.1:report (default-cli) > [scoverage]test @ adam-shade-spark2_2.11 >>> [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-shade-spark2_2.11 --- [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-shade-spark2_2.11 --- [INFO] [INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-shade-spark2_2.11 --- [INFO] Modified 0 of 0 .scala files [INFO] [INFO] --- scoverage-maven-plugin:1.1.1:pre-compile (default-cli) @ adam-shade-spark2_2.11 --- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-shade-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/src/main/resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-shade-spark2_2.11 --- [INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/src/main/java:-1: info: compiling [INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/target/generated-sources/annotations:-1: info: compiling [INFO] Compiling 1 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/target/2.11.12/scoverage-classes at 1567622309200 [INFO] [info] Cleaning datadir [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/target/scoverage-data] [INFO] [info] Beginning coverage instrumentation [INFO] [info] Instrumentation completed [0 statements] [INFO] [info] Wrote instrumentation file [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/target/scoverage-data/scoverage.coverage.xml] [INFO] [info] Will write measurement data to [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/target/scoverage-data] [INFO] prepare-compile in 0 s [INFO] compile in 1 s [INFO] [INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-shade-spark2_2.11 --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 1 source file to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/target/2.11.12/scoverage-classes [INFO] [INFO] --- plexus-component-metadata:1.5.5:generate-metadata (default) @ adam-shade-spark2_2.11 --- [INFO] Discovered 1 component descriptors(s) [INFO] [INFO] --- scoverage-maven-plugin:1.1.1:post-compile (default-cli) @ adam-shade-spark2_2.11 --- [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-shade-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/src/test/resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-shade-spark2_2.11 --- [INFO] No sources to compile [INFO] [INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-shade-spark2_2.11 --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-shade-spark2_2.11 --- [INFO] No tests to run. [INFO] [INFO] <<< scoverage-maven-plugin:1.1.1:report (default-cli) < [scoverage]test @ adam-shade-spark2_2.11 <<< [INFO] [INFO] --- scoverage-maven-plugin:1.1.1:report (default-cli) @ adam-shade-spark2_2.11 --- [INFO] [scoverage] Generating cobertura XML report... [INFO] [scoverage] Generating scoverage XML report... [INFO] [scoverage] Generating scoverage HTML report... [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building ADAM_2.11: Avro-to-Dataset codegen utils 0.29.0-SNAPSHOT [INFO] ------------------------------------------------------------------------ [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-codegen-spark2_2.11 --- [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-codegen-spark2_2.11 --- [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-codegen-spark2_2.11 --- [INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/src/main/scala added. [INFO] [INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-codegen-spark2_2.11 --- [INFO] Modified 0 of 4 .scala files [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-codegen-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/src/main/resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-codegen-spark2_2.11 --- [INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/src/main/scala:-1: info: compiling [INFO] Compiling 4 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/target/2.11.12/classes at 1567622311050 [INFO] prepare-compile in 0 s [INFO] compile in 4 s [INFO] [INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-codegen-spark2_2.11 --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-codegen-spark2_2.11 --- [INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/src/test/scala added. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-codegen-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/src/test/resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-codegen-spark2_2.11 --- [INFO] No sources to compile [INFO] [INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-codegen-spark2_2.11 --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-codegen-spark2_2.11 --- [INFO] Tests are skipped. [INFO] [INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-codegen-spark2_2.11 --- Discovery starting. Discovery completed in 58 milliseconds. Run starting. Expected test count is: 0 DiscoverySuite: Run completed in 84 milliseconds. Total number of tests run: 0 Suites: completed 1, aborted 0 Tests: succeeded 0, failed 0, canceled 0, ignored 0, pending 0 No tests were executed. [INFO] [INFO] >>> scoverage-maven-plugin:1.1.1:report (default-cli) > [scoverage]test @ adam-codegen-spark2_2.11 >>> [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-codegen-spark2_2.11 --- [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-codegen-spark2_2.11 --- [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-codegen-spark2_2.11 --- [INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/src/main/scala added. [INFO] [INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-codegen-spark2_2.11 --- [INFO] Modified 0 of 4 .scala files [INFO] [INFO] --- scoverage-maven-plugin:1.1.1:pre-compile (default-cli) @ adam-codegen-spark2_2.11 --- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-codegen-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/src/main/resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-codegen-spark2_2.11 --- [INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/src/main/scala:-1: info: compiling [INFO] Compiling 4 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/target/2.11.12/scoverage-classes at 1567622316857 [INFO] [info] Cleaning datadir [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/target/scoverage-data] [INFO] [info] Beginning coverage instrumentation [INFO] [info] Instrumentation completed [0 statements] [INFO] [info] Wrote instrumentation file [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/target/scoverage-data/scoverage.coverage.xml] [INFO] [info] Will write measurement data to [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/target/scoverage-data] [INFO] prepare-compile in 0 s [INFO] compile in 3 s [INFO] [INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-codegen-spark2_2.11 --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- scoverage-maven-plugin:1.1.1:post-compile (default-cli) @ adam-codegen-spark2_2.11 --- [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-codegen-spark2_2.11 --- [INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/src/test/scala added. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-codegen-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/src/test/resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-codegen-spark2_2.11 --- [INFO] No sources to compile [INFO] [INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-codegen-spark2_2.11 --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-codegen-spark2_2.11 --- [INFO] Tests are skipped. [INFO] [INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-codegen-spark2_2.11 --- Discovery starting. Discovery completed in 56 milliseconds. Run starting. Expected test count is: 0 DiscoverySuite: Run completed in 83 milliseconds. Total number of tests run: 0 Suites: completed 1, aborted 0 Tests: succeeded 0, failed 0, canceled 0, ignored 0, pending 0 No tests were executed. [INFO] [INFO] <<< scoverage-maven-plugin:1.1.1:report (default-cli) < [scoverage]test @ adam-codegen-spark2_2.11 <<< [INFO] [INFO] --- scoverage-maven-plugin:1.1.1:report (default-cli) @ adam-codegen-spark2_2.11 --- [INFO] [scoverage] Generating cobertura XML report... [INFO] [scoverage] Generating scoverage XML report... [INFO] [scoverage] Generating scoverage HTML report... [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building ADAM_2.11: Core 0.29.0-SNAPSHOT [INFO] ------------------------------------------------------------------------ Downloading: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/bdg-formats/bdg-formats/0.14.0-SNAPSHOT/maven-metadata.xml 790/790 B Downloaded: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/bdg-formats/bdg-formats/0.14.0-SNAPSHOT/maven-metadata.xml (790 B at 0.0 KB/sec) [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-core-spark2_2.11 --- [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-core-spark2_2.11 --- [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-core-spark2_2.11 --- [INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala added. [INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/generated-sources/src/main/scala added. [INFO] [INFO] --- exec-maven-plugin:1.5.0:java (generate-scala-products) @ adam-core-spark2_2.11 --- SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder". SLF4J: Defaulting to no-operation (NOP) logger implementation SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details. [INFO] [INFO] --- exec-maven-plugin:1.5.0:java (generate-scala-projection-fields) @ adam-core-spark2_2.11 --- SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder". SLF4J: Defaulting to no-operation (NOP) logger implementation SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details. [INFO] [INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-core-spark2_2.11 --- [INFO] Modified 2 of 202 .scala files [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-core-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-core-spark2_2.11 --- [INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/java:-1: info: compiling [INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala:-1: info: compiling [INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/generated-sources/src/main/scala:-1: info: compiling [INFO] Compiling 138 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/2.11.12/classes at 1567622355075 [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicDataset.scala:3099: warning: no valid targets for annotation on value uTag - it is discarded unused. You may specify targets with meta-annotations, e.g. @(transient @getter) [WARNING] @transient val uTag: TypeTag[U] [WARNING] ^ [WARNING] warning: there were 89 deprecation warnings; re-run with -deprecation for details [WARNING] warning: there were 5 feature warnings; re-run with -feature for details [WARNING] three warnings found [INFO] prepare-compile in 0 s [INFO] compile in 35 s [INFO] [INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-core-spark2_2.11 --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 6 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/2.11.12/classes [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-core-spark2_2.11 --- [INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala added. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-core-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 152 resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-core-spark2_2.11 --- [INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala:-1: info: compiling [INFO] Compiling 70 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/2.11.12/test-classes at 1567622392941 [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/algorithms/consensus/NormalizationUtilsSuite.scala:59: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development. [WARNING] .build() [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/algorithms/consensus/NormalizationUtilsSuite.scala:61: warning: method richRecordToRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development. [WARNING] val new_cigar = NormalizationUtils.leftAlignIndel(read) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/algorithms/consensus/NormalizationUtilsSuite.scala:66: warning: method richRecordToRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development. [WARNING] assert(RichAlignmentRecord(read).samtoolsCigar.getReadLength === new_cigar.getReadLength) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/SAMRecordConverterSuite.scala:54: warning: method getNotPrimaryAlignmentFlag in class SAMRecord is deprecated: see corresponding Javadoc for more information. [WARNING] assert(!testAlignmentRecord.getPrimaryAlignment === testSAMRecord.getNotPrimaryAlignmentFlag) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/SAMRecordConverterSuite.scala:89: warning: method getNotPrimaryAlignmentFlag in class SAMRecord is deprecated: see corresponding Javadoc for more information. [WARNING] assert(!testAlignmentRecord.getPrimaryAlignment === testSAMRecord.getNotPrimaryAlignmentFlag) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:53: warning: method extractDictionary in object SAMSequenceDictionaryExtractor is deprecated: see corresponding Javadoc for more information. [WARNING] SequenceDictionary(SAMSequenceDictionaryExtractor.extractDictionary(new File(path))) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/CoverageSuite.scala:37: warning: variable start in class Feature is deprecated: see corresponding Javadoc for more information. [WARNING] assert(coverageAfterConversion.start == featureToConvert.start) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/CoverageSuite.scala:38: warning: variable end in class Feature is deprecated: see corresponding Javadoc for more information. [WARNING] assert(coverageAfterConversion.end == featureToConvert.end) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/CoverageSuite.scala:40: warning: variable score in class Feature is deprecated: see corresponding Javadoc for more information. [WARNING] assert(coverageAfterConversion.count == featureToConvert.score) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/CoverageSuite.scala:57: warning: variable start in class Feature is deprecated: see corresponding Javadoc for more information. [WARNING] assert(coverageAfterConversion.start == featureToConvert.start) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/CoverageSuite.scala:58: warning: variable end in class Feature is deprecated: see corresponding Javadoc for more information. [WARNING] assert(coverageAfterConversion.end == featureToConvert.end) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/CoverageSuite.scala:60: warning: variable score in class Feature is deprecated: see corresponding Javadoc for more information. [WARNING] assert(coverageAfterConversion.count == featureToConvert.score) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/CoverageSuite.scala:61: warning: variable sampleId in class Feature is deprecated: see corresponding Javadoc for more information. [WARNING] assert(coverageAfterConversion.optSampleId == Some(featureToConvert.sampleId)) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/MdTagSuite.scala:194: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development. [WARNING] assert(read.mdTag.get.end === read.getEnd) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/MdTagSuite.scala:475: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development. [WARNING] val tag = read.mdTag.get [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/MdTagSuite.scala:482: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development. [WARNING] assert(tag.getReference(read) === "AAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGGGGAAAAAAAAAAGGGGGGGGGGAAAAAAAAAAA") [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/MdTagSuite.scala:495: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development. [WARNING] val tag = read.mdTag.get [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/MdTagSuite.scala:496: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development. [WARNING] assert(tag.getReference(read, withGaps = true) === "AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGGGGAAAAAAAAAAA") [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/MdTagSuite.scala:510: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development. [WARNING] val newTag = MdTag.moveAlignment(read, newCigar) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/MdTagSuite.scala:526: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development. [WARNING] val newTag = MdTag.moveAlignment(read, newCigar, "AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA", 100L) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/MdTagSuite.scala:544: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development. [WARNING] val newTag = MdTag.moveAlignment(read, newCigar, "GGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA", 100L) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/MdTagSuite.scala:562: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development. [WARNING] val newTag = MdTag.moveAlignment(read, newCigar, "AAAAAAAAAAGGGGGGGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA", 100L) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/MdTagSuite.scala:580: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development. [WARNING] val newTag = MdTag.moveAlignment(read, newCigar, "AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA", 100L) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/SequenceDictionarySuite.scala:48: warning: method extractDictionary in object SAMSequenceDictionaryExtractor is deprecated: see corresponding Javadoc for more information. [WARNING] val ssd = SAMSequenceDictionaryExtractor.extractDictionary(new File(path)) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/SequenceDictionarySuite.scala:62: warning: method extractDictionary in object SAMSequenceDictionaryExtractor is deprecated: see corresponding Javadoc for more information. [WARNING] val ssd = SAMSequenceDictionaryExtractor.extractDictionary(new File(path)) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/SequenceDictionarySuite.scala:75: warning: method extractDictionary in object SAMSequenceDictionaryExtractor is deprecated: see corresponding Javadoc for more information. [WARNING] val ssd = SAMSequenceDictionaryExtractor.extractDictionary(new File(path)) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/ADAMContextSuite.scala:832: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val df = SQLContext.getOrCreate(sc).read.parquet(outputDir) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/ADAMContextSuite.scala:845: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val df = SQLContext.getOrCreate(sc).read.parquet(outputDir) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/ADAMContextSuite.scala:857: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val df = SQLContext.getOrCreate(sc).read.parquet(outputDir) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/ADAMContextSuite.scala:870: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val df = SQLContext.getOrCreate(sc).read.parquet(outputDir) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/ADAMContextSuite.scala:883: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val df = SQLContext.getOrCreate(sc).read.parquet(outputDir) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/ADAMContextSuite.scala:896: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val df = SQLContext.getOrCreate(sc).read.parquet(outputDir) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/ADAMContextSuite.scala:907: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val df = SQLContext.getOrCreate(sc).read.parquet(outputDir) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/ADAMContextSuite.scala:918: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val df = SQLContext.getOrCreate(sc).read.parquet(outputDir) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/ADAMContextSuite.scala:929: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val df = SQLContext.getOrCreate(sc).read.parquet(outputDir) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/ADAMContextSuite.scala:943: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val df = SQLContext.getOrCreate(sc).read.parquet(outputDir) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/ADAMContextSuite.scala:956: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val df = SQLContext.getOrCreate(sc).read.parquet(outputDir) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/ADAMContextSuite.scala:968: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val df = SQLContext.getOrCreate(sc).read.parquet(outputDir) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/ADAMContextSuite.scala:980: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val df = SQLContext.getOrCreate(sc).read.parquet(outputDir) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/ADAMContextSuite.scala:993: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val df = SQLContext.getOrCreate(sc).read.parquet(outputDir) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/ADAMContextSuite.scala:1005: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val df = SQLContext.getOrCreate(sc).read.parquet(outputDir) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/ADAMContextSuite.scala:1018: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val df = SQLContext.getOrCreate(sc).read.parquet(outputDir) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/ADAMContextSuite.scala:1031: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val df = SQLContext.getOrCreate(sc).read.parquet(outputDir) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/ADAMContextSuite.scala:1044: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val df = SQLContext.getOrCreate(sc).read.parquet(outputDir) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/feature/CoverageDatasetSuite.scala:307: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val sqlContext = SQLContext.getOrCreate(sc) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/feature/CoverageDatasetSuite.scala:338: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val sqlContext = SQLContext.getOrCreate(sc) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/feature/CoverageDatasetSuite.scala:369: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val sqlContext = SQLContext.getOrCreate(sc) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/feature/CoverageDatasetSuite.scala:400: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val sqlContext = SQLContext.getOrCreate(sc) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/feature/CoverageDatasetSuite.scala:431: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val sqlContext = SQLContext.getOrCreate(sc) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/feature/CoverageDatasetSuite.scala:462: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val sqlContext = SQLContext.getOrCreate(sc) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/feature/FeatureDatasetSuite.scala:1022: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val sqlContext = SQLContext.getOrCreate(sc) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/feature/FeatureDatasetSuite.scala:1053: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val sqlContext = SQLContext.getOrCreate(sc) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/feature/FeatureDatasetSuite.scala:1081: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val sqlContext = SQLContext.getOrCreate(sc) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/feature/FeatureDatasetSuite.scala:1112: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val sqlContext = SQLContext.getOrCreate(sc) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/feature/FeatureDatasetSuite.scala:1143: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val sqlContext = SQLContext.getOrCreate(sc) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/feature/FeatureDatasetSuite.scala:1174: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val sqlContext = SQLContext.getOrCreate(sc) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/fragment/FragmentDatasetSuite.scala:400: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val sqlContext = SQLContext.getOrCreate(sc) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/fragment/FragmentDatasetSuite.scala:431: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val sqlContext = SQLContext.getOrCreate(sc) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/fragment/FragmentDatasetSuite.scala:459: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val sqlContext = SQLContext.getOrCreate(sc) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/fragment/FragmentDatasetSuite.scala:490: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val sqlContext = SQLContext.getOrCreate(sc) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/fragment/FragmentDatasetSuite.scala:521: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val sqlContext = SQLContext.getOrCreate(sc) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/fragment/FragmentDatasetSuite.scala:552: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val sqlContext = SQLContext.getOrCreate(sc) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordDatasetSuite.scala:1438: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val sqlContext = SQLContext.getOrCreate(sc) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordDatasetSuite.scala:1460: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val sqlContext = SQLContext.getOrCreate(sc) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordDatasetSuite.scala:1491: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val sqlContext = SQLContext.getOrCreate(sc) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordDatasetSuite.scala:1519: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val sqlContext = SQLContext.getOrCreate(sc) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordDatasetSuite.scala:1550: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val sqlContext = SQLContext.getOrCreate(sc) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordDatasetSuite.scala:1581: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val sqlContext = SQLContext.getOrCreate(sc) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordDatasetSuite.scala:1613: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val sqlContext = SQLContext.getOrCreate(sc) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTargetSuite.scala:83: warning: method richRecordToRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development. [WARNING] assert(TargetOrdering.contains(targets.head, read)) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTargetSuite.scala:191: warning: method richRecordToRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development. [WARNING] if (read.getStart < 105) { [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTargetSuite.scala:194: warning: method richRecordToRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development. [WARNING] assert(targets.head.readRange.start === read.getStart) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTargetSuite.scala:195: warning: method richRecordToRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development. [WARNING] assert(targets.head.readRange.end === read.getEnd) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTargetSuite.scala:196: warning: method richRecordToRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development. [WARNING] assert(check_indel(targets.head, read)) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:406: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val sqlContext = SQLContext.getOrCreate(sc) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:437: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val sqlContext = SQLContext.getOrCreate(sc) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:465: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val sqlContext = SQLContext.getOrCreate(sc) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:496: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val sqlContext = SQLContext.getOrCreate(sc) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:527: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val sqlContext = SQLContext.getOrCreate(sc) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:558: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val sqlContext = SQLContext.getOrCreate(sc) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:697: warning: variable end in class Genotype is deprecated: see corresponding Javadoc for more information. [WARNING] assert(first.end === 16157602L) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:698: warning: variable end in class Variant is deprecated: see corresponding Javadoc for more information. [WARNING] assert(first.variant.end === 16157602L) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:698: warning: variable variant in class Genotype is deprecated: see corresponding Javadoc for more information. [WARNING] assert(first.variant.end === 16157602L) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:699: warning: variable annotation in class Variant is deprecated: see corresponding Javadoc for more information. [WARNING] assert(first.variant.annotation === null) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:699: warning: variable variant in class Genotype is deprecated: see corresponding Javadoc for more information. [WARNING] assert(first.variant.annotation === null) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:710: warning: variable end in class Genotype is deprecated: see corresponding Javadoc for more information. [WARNING] assert(firstVcfGenotype.end === 16157602L) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:712: warning: variable end in class Variant is deprecated: see corresponding Javadoc for more information. [WARNING] assert(firstVcfGenotype.variant.end === 16157602L) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:712: warning: variable variant in class Genotype is deprecated: see corresponding Javadoc for more information. [WARNING] assert(firstVcfGenotype.variant.end === 16157602L) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:714: warning: variable annotation in class Variant is deprecated: see corresponding Javadoc for more information. [WARNING] assert(firstVcfGenotype.variant.annotation === null) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:714: warning: variable variant in class Genotype is deprecated: see corresponding Javadoc for more information. [WARNING] assert(firstVcfGenotype.variant.annotation === null) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:745: warning: variable end in class Genotype is deprecated: see corresponding Javadoc for more information. [WARNING] assert(first.end === 16157602L) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:746: warning: variable end in class Variant is deprecated: see corresponding Javadoc for more information. [WARNING] assert(first.variant.end === 16157602L) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:746: warning: variable variant in class Genotype is deprecated: see corresponding Javadoc for more information. [WARNING] assert(first.variant.end === 16157602L) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:747: warning: variable attributes in class VariantAnnotation is deprecated: see corresponding Javadoc for more information. [WARNING] assert(first.variant.annotation.attributes.get("END") === "16157602") [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:747: warning: variable annotation in class Variant is deprecated: see corresponding Javadoc for more information. [WARNING] assert(first.variant.annotation.attributes.get("END") === "16157602") [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:747: warning: variable variant in class Genotype is deprecated: see corresponding Javadoc for more information. [WARNING] assert(first.variant.annotation.attributes.get("END") === "16157602") [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:758: warning: variable end in class Genotype is deprecated: see corresponding Javadoc for more information. [WARNING] assert(firstVcfGenotype.end === 16157602L) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:759: warning: variable end in class Variant is deprecated: see corresponding Javadoc for more information. [WARNING] assert(firstVcfGenotype.variant.end === 16157602L) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:759: warning: variable variant in class Genotype is deprecated: see corresponding Javadoc for more information. [WARNING] assert(firstVcfGenotype.variant.end === 16157602L) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:760: warning: variable attributes in class VariantAnnotation is deprecated: see corresponding Javadoc for more information. [WARNING] assert(firstVcfGenotype.variant.annotation.attributes.get("END") === "16157602") [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:760: warning: variable annotation in class Variant is deprecated: see corresponding Javadoc for more information. [WARNING] assert(firstVcfGenotype.variant.annotation.attributes.get("END") === "16157602") [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:760: warning: variable variant in class Genotype is deprecated: see corresponding Javadoc for more information. [WARNING] assert(firstVcfGenotype.variant.annotation.attributes.get("END") === "16157602") [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/VariantContextDatasetSuite.scala:181: warning: variable start in class Genotype is deprecated: see corresponding Javadoc for more information. [WARNING] val filtered = vcs.toGenotypes().rdd.filter(_.start == 66631043) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/VariantDatasetSuite.scala:422: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val sqlContext = SQLContext.getOrCreate(sc) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/VariantDatasetSuite.scala:453: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val sqlContext = SQLContext.getOrCreate(sc) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/VariantDatasetSuite.scala:481: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val sqlContext = SQLContext.getOrCreate(sc) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/VariantDatasetSuite.scala:512: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val sqlContext = SQLContext.getOrCreate(sc) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/VariantDatasetSuite.scala:543: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val sqlContext = SQLContext.getOrCreate(sc) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/VariantDatasetSuite.scala:574: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val sqlContext = SQLContext.getOrCreate(sc) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichAlignmentRecordSuite.scala:31: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development. [WARNING] assert(recordWithoutClipping.unclippedStart == 42L) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichAlignmentRecordSuite.scala:32: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development. [WARNING] assert(recordWithClipping.unclippedStart == 40L) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichAlignmentRecordSuite.scala:33: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development. [WARNING] assert(recordWithHardClipping.unclippedStart == 37L) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichAlignmentRecordSuite.scala:41: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development. [WARNING] assert(recordWithoutClipping.unclippedEnd == 20L) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichAlignmentRecordSuite.scala:42: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development. [WARNING] assert(recordWithClipping.unclippedEnd == 20L) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichAlignmentRecordSuite.scala:43: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development. [WARNING] assert(recordWithHardClipping.unclippedEnd == 20L) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichAlignmentRecordSuite.scala:49: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development. [WARNING] assert(rec.tags.size === 2) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichAlignmentRecordSuite.scala:50: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development. [WARNING] assert(rec.tags(0) === Attribute("XX", TagType.Integer, 3)) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichAlignmentRecordSuite.scala:51: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development. [WARNING] assert(rec.tags(1) === Attribute("YY", TagType.String, "foo")) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichAlignmentRecordSuite.scala:57: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development. [WARNING] val overlaps = unmappedRead.overlapsReferencePosition(ReferencePosition("chr1", 10)) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichCigarSuite.scala:34: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development. [WARNING] val newCigar = RichCigar(new Cigar(read.samtoolsCigar.getCigarElements)).moveLeft(1) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichCigarSuite.scala:37: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development. [WARNING] assert(newCigar2.cigar.getReadLength == read.samtoolsCigar.getReadLength) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichCigarSuite.scala:49: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development. [WARNING] val newCigar = RichCigar(new Cigar(read.samtoolsCigar.getCigarElements)).moveLeft(1) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichCigarSuite.scala:52: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development. [WARNING] assert(newCigar2.cigar.getReadLength == read.samtoolsCigar.getReadLength) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichCigarSuite.scala:64: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development. [WARNING] val newCigar = RichCigar(new Cigar(read.samtoolsCigar.getCigarElements)).moveLeft(1) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichCigarSuite.scala:66: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development. [WARNING] assert(newCigar.cigar.getReadLength == read.samtoolsCigar.getReadLength) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichCigarSuite.scala:78: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development. [WARNING] val newCigar = RichCigar(new Cigar(read.samtoolsCigar.getCigarElements)).moveLeft(1) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichCigarSuite.scala:80: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development. [WARNING] assert(newCigar.cigar.getReadLength == read.samtoolsCigar.getReadLength) [WARNING] ^ [WARNING] 127 warnings found [INFO] prepare-compile in 0 s [INFO] compile in 40 s [INFO] [INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-core-spark2_2.11 --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-core-spark2_2.11 --- [INFO] Tests are skipped. [INFO] [INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-core-spark2_2.11 --- Discovery starting. Discovery completed in 2 seconds, 718 milliseconds. Run starting. Expected test count is: 1175 RepairPartitionsSuite: - don't pull from the first partition - properly handle pulling from an empty iterator - gets a single read from the partition if there are no other reads in the pair - gets all the reads from a pair from the start of a partition - properly handle dropping from an empty iterator - don't drop from the first partition - drop a single read from the partition if there are no other reads in the pair - drops all the reads from a pair from the start of a partition - only append to the first partition - drop a single read from the partition and append read when in the middle - drop reads from the start and don't append when in the last partition - can't have more records than number of partitions - unroll array for broadcast 2019-09-04 11:40:36 WARN Utils:66 - Your hostname, research-jenkins-worker-09 resolves to a loopback address: 127.0.1.1; using 192.168.10.31 instead (on interface enp4s0f0) 2019-09-04 11:40:36 WARN Utils:66 - Set SPARK_LOCAL_IP if you need to bind to another address 2019-09-04 11:40:36 WARN NativeCodeLoader:62 - Unable to load native-hadoop library for your platform... using builtin-java classes where applicable - move pairs around an rdd FlagStatSuite: - Standard FlagStat test ModPartitionerSuite: - report number of partitions correctly - partition a number that is lower than the number of partitions and positive - partition a number that is greater than the number of partitions and positive - partition a number that is lower than the number of partitions and negative - partition a number that is greater than the number of partitions and negative - fire an exception if input is not an integer TwoBitFileSuite: - correctly read sequence from .2bit file - correctly return masked sequences from .2bit file - correctly return Ns from .2bit file - correctly calculates sequence dictionary NonoverlappingRegionsSuite: - alternating returns an alternating seq of items - Single region returns itself - Two adjacent regions will be merged - Nonoverlapping regions will all be returned - Many overlapping regions will all be merged - ADAMRecords return proper references ReferencePositionSuite: - create reference position from mapped read - create reference position from variant - create reference position from genotype - create reference position from variant starting at vcf 0 - create reference position from genotype starting at vcf 0 ConsensusGeneratorFromReadsSuite: - checking search for consensus list for artificial reads FragmentConverterSuite: - build a fragment collector and convert to a read - if a fragment isn't associated with a contig, don't get a fragment collector - convert an rdd of discontinuous fragments, all from the same contig - convert an rdd of contiguous fragments, all from the same contig - convert an rdd of varied fragments from multiple contigs FileMergerSuite: - cannot write both empty gzip block and cram eof - buffer size must be non-negative AlignmentRecordDatasetSuite: - sorting reads - unmapped reads go at the end when sorting - coverage does not fail on unmapped reads 2019-09-04 11:40:49 WARN Utils:66 - Truncated the string representation of a plan since it was too large. This behavior can be adjusted by setting 'spark.debug.maxToStringFields' in SparkEnv.conf. - computes coverage - computes coverage with multiple samples - merges adjacent records with equal coverage values - sorting reads by reference index - round trip from ADAM to SAM and back to ADAM produces equivalent Read values - round trip with single CRAM file produces equivalent Read values - round trip with sharded CRAM file produces equivalent Read values - SAM conversion sets read mapped flag properly - load long FASTQ reads - load FASTQ with no bases - convert malformed FASTQ (no quality scores) => SAM => well-formed FASTQ => SAM - round trip from ADAM to FASTQ and back to ADAM produces equivalent Read values - round trip from ADAM to paired-FASTQ and back to ADAM produces equivalent Read values - writing a small file with tags should produce the expected result - writing a small sorted file as SAM should produce the expected result - writing unordered sam from unordered sam - writing ordered sam from unordered sam - write single sam file back - write single bam file back - saveAsParquet with save args, sequence dictionary, and read group dictionary - load parquet to sql, save, re-read from avro - load from sam, save as partitioned parquet, and re-read from partitioned parquet - save as SAM format - save as sorted SAM format - save as BAM format - save as sorted BAM format - save as FASTQ format - save as ADAM parquet format - saveAsSam SAM format - saveAsSam SAM format single file - saveAsSam sorted SAM format single file - saveAsSam BAM format - saveAsSam BAM format single file - saveAsSam sorted BAM format single file - saveAsFastq - saveAsFastq as single file - saveAsFastq with original base qualities - saveAsFastq sorted by read name - saveAsFastq sorted by read name with original base qualities 2019-09-04 11:41:22 WARN RDDBoundAlignmentRecordDataset:190 - Found 20 read names that don't occur exactly twice: 1x: 20 Samples: simread:1:237728409:true simread:1:195211965:false simread:1:163841413:false simread:1:231911906:false simread:1:26472783:false simread:1:165341382:true simread:1:240344442:true simread:1:50683371:false simread:1:240997787:true simread:1:14397233:false simread:1:207027738:true simread:1:20101800:true simread:1:101556378:false simread:1:37577445:false simread:1:189606653:true simread:1:5469106:true simread:1:186794283:true simread:1:89554252:false simread:1:153978724:false simread:1:169801933:true - saveAsFastq paired FASTQ 2019-09-04 11:41:23 WARN RDDBoundAlignmentRecordDataset:190 - Found 20 read names that don't occur exactly twice: 1x: 20 Samples: simread:1:237728409:true simread:1:195211965:false simread:1:163841413:false simread:1:231911906:false simread:1:26472783:false simread:1:165341382:true simread:1:240344442:true simread:1:50683371:false simread:1:240997787:true simread:1:14397233:false simread:1:207027738:true simread:1:20101800:true simread:1:101556378:false simread:1:37577445:false simread:1:189606653:true simread:1:5469106:true simread:1:186794283:true simread:1:89554252:false simread:1:153978724:false simread:1:169801933:true - saveAsPairedFastq 2019-09-04 11:41:24 WARN RDDBoundAlignmentRecordDataset:190 - Found 20 read names that don't occur exactly twice: 1x: 20 Samples: simread:1:237728409:true simread:1:195211965:false simread:1:163841413:false simread:1:231911906:false simread:1:26472783:false simread:1:165341382:true simread:1:240344442:true simread:1:50683371:false simread:1:240997787:true simread:1:14397233:false simread:1:207027738:true simread:1:20101800:true simread:1:101556378:false simread:1:37577445:false simread:1:189606653:true simread:1:5469106:true simread:1:186794283:true simread:1:89554252:false simread:1:153978724:false simread:1:169801933:true - saveAsPairedFastq as single files - don't lose any reads when piping as SAM 2019-09-04 11:41:35 WARN OutFormatterRunner:190 - Piped command List(sleep, 10) timed out after 5 seconds. 2019-09-04 11:41:35 WARN OutFormatterRunner:190 - Piped command List(sleep, 10) timed out after 5 seconds. - lose all records when a command times out - lose no records without a timeout 2019-09-04 11:41:56 WARN OutFormatterRunner:190 - Piped command List(python, /tmp/adamTestMvnb0spyFX/spark-51b44f6e-3372-4a5f-842e-f0a9ba5bd9ef/userFiles-ac0a9cb6-1991-49e8-8950-5a2ae88a30d8/timeout.py) timed out after 5 seconds. 2019-09-04 11:41:56 WARN OutFormatterRunner:190 - Piped command List(python, /tmp/adamTestMvnb0spyFX/spark-51b44f6e-3372-4a5f-842e-f0a9ba5bd9ef/userFiles-ac0a9cb6-1991-49e8-8950-5a2ae88a30d8/timeout.py) timed out after 5 seconds. - lose some records when a command times out - don't lose any reads when piping as SAM using java pipe - don't lose any reads when piping as BAM - don't lose any reads when piping fastq to sam - can properly set environment variables inside of a pipe - read vcf from alignment record pipe !!! IGNORED !!! - use broadcast join to pull down reads mapped to targets - use broadcast join against to pull down reads mapped to targets - use right outer broadcast join to pull down reads mapped to targets - use right outer broadcast join against to pull down reads mapped to targets - use shuffle join with feature spanning partitions - use shuffle join to pull down reads mapped to targets - use shuffle join with flankSize to pull down reads mapped close to targets - use right outer shuffle join to pull down reads mapped to targets - use left outer shuffle join to pull down reads mapped to targets - use full outer shuffle join to pull down reads mapped to targets - use shuffle join with group by to pull down reads mapped to targets - use right outer shuffle join with group by to pull down reads mapped to targets - cannot provide empty quality score bins - cannot provide bins with a gap - cannot provide overlapping bins - binning quality scores in reads succeeds even if reads have no quality scores - bin quality scores in reads - union two read files together - test k-mer counter - test dataset based k-mer counter - transform reads to slice genomic dataset - transform reads to coverage genomic dataset - transform reads to feature genomic dataset - transform reads to fragment genomic dataset - transform reads to genotype genomic dataset loading /tmp/adamTestMvnb0spyFX/TempSuite933049904116880796.adam as parquet into RDD... loading /tmp/adamTestMvnb0spyFX/TempSuite2092335097302324231.adam as parquet into RDD... - transform reads to variant genomic dataset - cannot have a null processing step ID - convert a processing description to htsjdk - GenomicDataset.sort does not fail on unmapped reads - GenomicDataset.sortLexicographically does not fail on unmapped reads - left normalize indels - running base recalibration with downsampling doesn't drop reads - filter RDD bound alignments by MAPQ - filter dataset bound alignments by MAPQ - filter RDD bound unaligned alignments - filter dataset bound unaligned alignments - filter RDD bound unpaired alignments - filter dataset bound unpaired alignments - filter RDD bound duplicate alignments - filter dataset bound duplicate alignments - filter RDD bound alignments to primary alignments - filter dataset bound alignments to primary alignments - filter RDD bound alignments to read group - filter dataset bound alignments to read group - filter RDD bound alignments to read groups - filter dataset bound alignments to read groups - filter RDD bound alignments to sample - filter dataset bound alignments to sample - filter RDD bound alignments to samples - filter dataset bound alignments to samples - sort by read name - transform dataset via java API - convert alignments to reads SingleReadBucketSuite: - convert unmapped pair to fragment - convert proper pair to fragment - convert read pair to fragment with first of pair chimeric read RecalibrationTableSuite: - look up quality scores in table FlankSlicesSuite: - don't put flanks on non-adjacent slices - put flanks on adjacent slices InterleavedFastqInputFormatSuite: - interleaved FASTQ hadoop reader: interleaved_fastq_sample1.ifq->interleaved_fastq_sample1.ifq.output - interleaved FASTQ hadoop reader: interleaved_fastq_sample2.ifq->interleaved_fastq_sample2.ifq.output - interleaved FASTQ hadoop reader: interleaved_fastq_sample3.ifq->interleaved_fastq_sample3.ifq.output - interleaved FASTQ hadoop reader: interleaved_fastq_sample4.ifq->interleaved_fastq_sample4.ifq.output - interleaved FASTQ hadoop reader: interleaved_fastq_sample5.ifq->interleaved_fastq_sample5.ifq.output TreeRegionJoinSuite: - run a join between data on a single contig ReferenceRegionSuite: - cannot create an empty predicate - parse empty string throws IllegalArgumentException - parse contigName only string into reference regions - parse to end strings into reference regions - parse string into reference regions - contains(: ReferenceRegion) - contains(: ReferencePosition) - merge - overlaps and covers - overlapsBy and coversBy - distance(: ReferenceRegion) - distance(: ReferencePosition) - unstrandedDistance - subtract fails on non-overlapping and non-covering regions - subtract - create region from unmapped read fails - create region from read with null alignment positions fails - create stranded region from unmapped read fails - create stranded region from read with null alignment positions fails - create stranded region from read with null alignment strand fails - create stranded region from read on forward strand - create stranded region from read on reverse strand - create region from mapped read contains read start and end - validate that adjacent regions can be merged - validate that non-adjacent regions cannot be merged - validate that nearby regions can be merged - validate that non-nearby regions cannot be merged - compute convex hull of two sets - region name is sanitized when creating region from read - intersection fails on non-overlapping regions - intersection fails when minOverlap is not met - compute intersection - overlap tests for oriented reference region - check the width of a reference region - make a reference region for a variant or genotype - make a reference region for a variant or genotype starting at VCF 0 - uniformly pad a reference region - uniformly pad a reference region into negative coordinate space, ensure non negative start - unevenly pad a reference region - unevenly pad a reference region into negative coordinate space, ensure non negative start - can build an open ended reference region - can build an open ended reference region with strand - can build a reference region with an open start position - can build a reference region with an open start position with strand - can build a reference region that covers the entirety of a contig - can build a reference region that covers the entirety of a contig with strand - convert a genotype and then get the reference region - create region from feature with null alignment positions fails - create stranded region from feature with null alignment positions fails - create stranded region from feature with null alignment strand fails - create stranded region from feature on forward strand - create stranded region from feature on reverse strand AlignmentRecordConverterSuite: - testing the fields in a converted ADAM Read - converting a read with null quality is OK - convert a read to fastq - reverse complement reads when converting to fastq - converting to fastq with unmapped reads where read reverse complemented flag (Ox10) was NOT set - converting to fastq with unmapped reads where reverse complemented flag (0x10) was set - converting a fragment with no alignments should yield unaligned reads - converting a fragment with alignments should restore the alignments - read negative strand is propagated even when not mapped CoverageDatasetSuite: - correctly saves coverage - can read a bed file to coverage - correctly filters coverage with predicate - keeps sample metadata - can read a bed file with multiple samples to coverage - correctly flatmaps coverage without aggregated bins - correctly flatmaps coverage with aggregated bins - collapses coverage records in one partition - approximately collapses coverage records in multiple partitions 2019-09-04 11:42:50 WARN DatasetBoundSliceDataset:190 - Saving directly as Parquet from SQL. Options other than compression codec are ignored. - transform coverage to slice genomic dataset - transform coverage to feature genomic dataset - transform coverage to fragment genomic dataset - transform coverage to read genomic dataset - transform coverage to genotype genomic dataset - transform coverage to variant genomic dataset - transform coverage to variant context genomic dataset - copy coverage rdd - copy coverage dataset - copy coverage rdd without sequence dictionary - copy coverage dataset without sequence dictionary - transform dataset via java API RecalibratorSuite: - don't replace quality if quality was null - if no covariates, return alignment - skip recalibration if base is below quality threshold - recalibrate changed bases above quality threshold SliceDatasetSuite: - create a new slice genomic dataset - create a new slice genomic dataset with sequence dictionary - merge slices into a sequence genomic dataset - save as parquet - round trip as parquet - save as fasta - save as single file fasta - convert slices to reads - convert slices to sequences GenotypeDatasetSuite: - union two genotype genomic datasets together - round trip to parquet - round trip to partitioned parquet - use broadcast join to pull down genotypes mapped to targets - use right outer broadcast join to pull down genotypes mapped to targets - use shuffle join to pull down genotypes mapped to targets - use right outer shuffle join to pull down genotypes mapped to targets - use left outer shuffle join to pull down genotypes mapped to targets - use full outer shuffle join to pull down genotypes mapped to targets - use shuffle join with group by to pull down genotypes mapped to targets - use right outer shuffle join with group by to pull down genotypes mapped to targets - convert back to variant contexts - load parquet to sql, save, re-read from avro 2019-09-04 11:43:19 WARN DatasetBoundSliceDataset:190 - Saving directly as Parquet from SQL. Options other than compression codec are ignored. - transform genotypes to slice genomic dataset - transform genotypes to coverage genomic dataset - transform genotypes to feature genomic dataset - transform genotypes to fragment genomic dataset - transform genotypes to read genomic dataset - transform genotypes to variant genomic dataset - transform genotypes to variant context genomic dataset - loading genotypes then converting to variants yields same output as loading variants - filter RDD bound genotypes to genotype filters passed - filter dataset bound genotypes to genotype filters passed - filter RDD bound genotypes by genotype quality - filter dataset bound genotypes by genotype quality - filter RDD bound genotypes by read depth - filter dataset bound genotypes by read depth - filter RDD bound genotypes by alternate read depth - filter dataset bound genotypes by alternate read depth - filter RDD bound genotypes by reference read depth - filter dataset bound genotypes by reference read depth - filter RDD bound genotypes by sample - filter dataset bound genotypes by sample - filter RDD bound genotypes by samples - filter dataset bound genotypes by samples - filter RDD bound no call genotypes - filter dataset no call genotypes - round trip gVCF END attribute without nested variant annotations rdd bound - round trip gVCF END attribute without nested variant annotations dataset bound - round trip gVCF END attribute with nested variant annotations rdd bound - round trip gVCF END attribute with nested variant annotations dataset bound - transform dataset via java API FragmentDatasetSuite: - don't lose any reads when piping interleaved fastq to sam - don't lose any reads when piping tab5 to sam - don't lose any reads when piping tab6 to sam - use broadcast join to pull down fragments mapped to targets - use right outer broadcast join to pull down fragments mapped to targets - use shuffle join to pull down fragments mapped to targets - use right outer shuffle join to pull down fragments mapped to targets - use left outer shuffle join to pull down fragments mapped to targets - use full outer shuffle join to pull down fragments mapped to targets - use shuffle join with group by to pull down fragments mapped to targets - use right outer shuffle join with group by to pull down fragments mapped to targets - bin quality scores in fragments - union two genomic datasets of fragments together - load parquet to sql, save, re-read from avro - transform fragments to slice genomic dataset - transform fragments to coverage genomic dataset - transform fragments to feature genomic dataset - transform fragments to read genomic dataset - transform fragments to genotype genomic dataset - transform fragments to variant genomic dataset - transform fragments to variant context genomic dataset - paired read names with index sequences in read names can group into fragments - interleaved paired read names with index sequences in read names can group into fragments - interleaved paired read names with index sequences in read names as fragments - transform dataset via java API - dataset and rdd conversion to alignments are equivalent SingleFastqInputFormatSuite: - FASTQ hadoop reader: fastq_sample1.fq->single_fastq_sample1.fq.output - FASTQ hadoop reader: fastq_sample2.fq->single_fastq_sample2.fq.output - FASTQ hadoop reader: fastq_sample3.fq->single_fastq_sample3.fq.output - FASTQ hadoop reader: fastq_sample4.fq->single_fastq_sample4.fq.output VariantContextDatasetSuite: - load a gvcf with a missing info field set to . - union two variant context genomic datasets together - can write, then read in .vcf file - can write as a single file via simple saveAsVcf method, then read in .vcf file - can write as a single file via full saveAsVcf method, then read in .vcf file - transform a vcf file with bad header - read a vcf file with multi-allelic variants to split - support VCFs with +Inf/-Inf float values - support VCFs with `nan` instead of `NaN` float values - don't lose any variants when piping as VCF - pipe works with empty partitions - don't lose any non-default VCF header lines or attributes when piping as VCF - save a file sorted by contig index - save a lexicographically sorted file - save a multiallelic gvcf !!! IGNORED !!! - test metadata - save sharded bgzip vcf - save bgzip vcf as single file - can't save file with non-vcf extension - transform variant contexts to slice genomic dataset - transform variant contexts to coverage genomic dataset - transform variant contexts to feature genomic dataset - transform variant contexts to fragment genomic dataset - transform variant contexts to read genomic dataset - transform variant contexts to genotype genomic dataset - transform variant contexts to variant genomic dataset - save and reload from partitioned parquet - transform dataset via java API ConsensusSuite: - test the insertion of a consensus insertion into a reference - test the insertion of a consensus deletion into a reference - inserting empty consensus returns the reference SequenceDatasetSuite: - create a new sequence genomic dataset - create a new sequence genomic dataset with sequence dictionary - save as parquet - round trip as parquet - save as fasta - save as single file fasta - convert sequences to reads - convert sequences to slices - slice sequences to a maximum length - slice sequences shorter than maximum length - filter sequences by overlapping region - filter sequences failing to overlap region - filter sequences by overlapping regions - filter sequences failing to overlap regions - slice sequences overlapping a smaller region - slice sequences overlapping a larger region - slice sequences failing to overlap a region - slice sequences overlapping smaller regions - slice sequences overlapping larger regions - slice sequences failing to overlap regions AttributeUtilsSuite: - parseTags returns a reasonable set of tagStrings - parseTags works with NumericSequence tagType - empty string is parsed as zero tagStrings - incorrectly formatted tag throws an exception - string tag with a ':' in it is correctly parsed - oq string tag with many ':' in it is correctly parsed - oq string tag with a ',' in it is correctly parsed - if a tag is an array but doesn't define it's format, throw MarkDuplicatesSuite: - single read - reads at different positions - reads at the same position - reads at the same position with clipping - reads on reverse strand - unmapped reads - read pairs - read pairs with fragments - quality scores - read pairs that cross chromosomes - single fragment - fragments at different positions - fragments at the same position - fragments at the same position with clipping - fragments on reverse strand - unmapped fragments - read pairs as fragments - read pairs with fragments as fragments - chimeric fragments - inverse pairs - supplemental reads TranscriptEffectConverterSuite: - parse empty transcript effect - parse empty transcript effect strict validation stringency - parse invalid transcript effect - parse invalid transcript effect strict validation stringency - parse transcript effect - parse empty list VCF ANN attribute - parse empty list VCF ANN attribute strict validation stringency - parse empty string VCF ANN attribute - parse empty string VCF ANN attribute strict validation stringency - parse invalid VCF ANN attribute - parse invalid VCF ANN attribute strict validation stringency - parse VCF ANN attribute with one transcript effect - parse VCF ANN attribute with multiple transcript effects - convert to transcript effect from null VCF ANN attribute in variant context - convert to transcript effect from empty list VCF ANN attribute in variant context - convert to transcript effect from empty list VCF ANN attribute in variant context strict validation stringency - convert to transcript effect from empty string VCF ANN attribute in variant context - convert to transcript effect from empty string VCF ANN attribute in variant context strict validation stringency - convert to transcript effect from invalid VCF ANN attribute in variant context - convert to transcript effect from invalid VCF ANN attribute in variant context strict validation stringency 2019-09-04 11:44:46 WARN TranscriptEffectConverter$:190 - Could not convert VCF INFO reserved key ANN value to TranscriptEffect, caught java.lang.NumberFormatException: For input string: "not a number". - convert to transcript effect from VCF ANN attribute with invalid number in variant context lenient validation stringency 2019-09-04 11:44:46 WARN TranscriptEffectConverter$:190 - Could not convert VCF INFO reserved key ANN value to TranscriptEffect, caught java.lang.NumberFormatException: For input string: "not a number". - convert to transcript effect from VCF ANN attribute with invalid fraction in variant context lenient validation stringency - convert to transcript effect from VCF ANN attribute with invalid number in variant context strict validation stringency - convert to transcript effect from VCF ANN attribute with invalid fraction in variant context strict validation stringency - convert to transcript effect from VCF ANN attribute in variant context different alt allele - convert to transcript effect from VCF ANN attribute in variant context same alt allele - convert to transcript effect from VCF ANN attribute in variant context multiple effects same alt allele - convert transcript effect to VCF ANN attribute value - convert transcript effect with null fields to VCF ANN attribute value 2019-09-04 11:44:46 WARN TranscriptEffectConverter$:190 - Incorrect fractional value ?/2, missing numerator - convert transcript effect with incorrect fractional value to VCF ANN attribute value IndelRealignmentTargetSuite: - checking simple realignment target - creating simple target from read with deletion - creating simple target from read with insertion - joining simple realignment targets on same chr - joining simple realignment targets on different chr throws exception - creating targets from three intersecting reads, same indel - creating targets from three intersecting reads, two different indel - creating targets from two disjoint reads - creating targets for artificial reads: one-by-one - creating targets for artificial reads: all-at-once (merged) - creating indel targets for mason reads - additional indel targets taken from consensus generator NormalizationUtilsSuite: - cannot move an indel left if there are no bases to it's left - move a simple indel to farthest position left until bases run out - move a simple indel to farthest position left, past length of indel - cannot move a left normalized indel in a short tandem repeat - move an indel in a short tandem repeat - move an indel in a short tandem repeat of more than 2 bases, where shift is not an integer multiple of repeated sequence length - moving a simple read with single deletion that cannot shift - shift an indel left by 0 in a cigar - shift an indel left by 1 in a cigar - do not left align a complex read which is already left aligned ReadGroupDictionarySuite: - simple conversion to and from sam read group - sample name must be set - simple equality checks - get samples from read group dictionary - empty read group is empty - merging a dictionary with itself should work - round trip a record with all attributes set RightOuterTreeRegionJoinSuite: - Ensure same reference regions get passed together - Overlapping reference regions InnerShuffleRegionJoinSuite: - Overlapping reference regions - Multiple reference regions do not throw exception FeatureDatasetSuite: - round trip GTF format - save GTF as GFF3 format - save GTF as BED format - save GTF as IntervalList format - save GTF as NarrowPeak format - save GFF3 as GTF format - save GFF3 as BED format - save GFF3 as IntervalList format - save GFF3 as NarrowPeak format - round trip GFF3 format - ignore FASTA sequence in GFF3 file - save BED as GTF format - save BED as GFF3 format - save BED as IntervalList format - save BED as NarrowPeak format - round trip BED6 format - keeps sample metadata - round trip BED12 format - save to UCSC BED format - save IntervalList as GTF format - save IntervalList as GFF3 format - save IntervalList as BED format - save IntervalList as IntervalList format - save IntervalList as NarrowPeak format - round trip IntervalList format - save NarrowPeak as GTF format - save NarrowPeak as GFF3 format - save NarrowPeak as BED format - save NarrowPeak as IntervalList format - save NarrowPeak as NarrowPeak format - round trip NarrowPeak format - sort by reference - sort by reference and feature fields - sort gene features by reference and gene structure - sort transcript features by reference and gene structure - sort exon features by reference and gene structure - sort intron features by reference and gene structure - correctly flatmaps CoverageDataset from FeatureDataset - use broadcast join to pull down features mapped to targets - use right outer broadcast join to pull down features mapped to targets - use shuffle join to pull down features mapped to targets - use right outer shuffle join to pull down features mapped to targets - use left outer shuffle join to pull down features mapped to targets - use full outer shuffle join to pull down features mapped to targets - use shuffle join with group by to pull down features mapped to targets - use right outer shuffle join with group by to pull down features mapped to targets - union two feature rdds together - obtain sequence dictionary contig lengths from header in IntervalList format - don't lose any features when piping as BED format - don't lose any features when piping as GTF format - don't lose any features when piping as GFF3 format - don't lose any features when piping as NarrowPeak format - load parquet to sql, save, re-read from avro - load partitioned parquet to sql, save, re-read from avro 2019-09-04 11:45:27 WARN DatasetBoundSliceDataset:190 - Saving directly as Parquet from SQL. Options other than compression codec are ignored. - transform features to slice genomic dataset - transform features to coverage genomic dataset - transform features to fragment genomic dataset - transform features to read genomic dataset - transform features to genotype genomic dataset - transform features to variant genomic dataset - transform features to variant context genomic dataset - filter RDD bound features by feature type - filter dataset bound features by feature type - filter RDD bound features by feature types - filter dataset bound features by feature types - filter RDD bound features by gene - filter dataset bound features by gene - filter RDD bound features by genes - filter dataset bound features by genes - filter RDD bound features by transcript - filter dataset bound features by transcript - filter RDD bound features by transcripts - filter dataset bound features by transcripts - filter RDD bound features by exon - filter dataset bound features by exon - filter RDD bound features by exons - filter dataset bound features by exons - filter RDD bound features by score - filter dataset bound features by score - filter RDD bound features by parent - filter dataset bound features by parent - filter RDD bound features by parents - filter dataset bound features by parents - filter RDD bound features by attribute - filter dataset bound features by attribute - transform dataset via java API AlphabetSuite: - test size of a case-sensitive alphabet - test apply of a case-sensitive alphabet - test reverse complement of a case-sensitive alphabet - test exact reverse complement of a case-sensitive alphabet - test size of a case-insensitive alphabet - test apply of a case-insensitive alphabet - test reverse complement of a case-insensitive alphabet - test exact reverse complement of a case-insensitive alphabet - DNA alphabet - map unknown bases to N SortedGenomicDatasetSuite: - testing that partition and sort provide correct outputs - testing copartition maintains or adds sort - testing that we don't drop any data on the right side even though it doesn't map to a partition on the left - testing that sorted shuffleRegionJoin matches unsorted - testing that sorted fullOuterShuffleRegionJoin matches unsorted - testing that sorted rightOuterShuffleRegionJoin matches unsorted - testing that sorted leftOuterShuffleRegionJoin matches unsorted - testing that we can persist the sorted knowledge 2019-09-04 11:45:50 WARN VariantContextConverter:2300 - Applying annotation extraction function to {"variant": {"referenceName": "1", "start": 0, "end": 1, "names": [], "splitFromMultiAllelic": false, "referenceAllele": "A", "alternateAllele": "T", "quality": null, "filtersApplied": null, "filtersPassed": null, "filtersFailed": [], "annotation": null}, "referenceName": null, "start": null, "end": null, "variantCallingAnnotations": {"filtersApplied": null, "filtersPassed": null, "filtersFailed": [], "downsampled": null, "baseQRankSum": null, "fisherStrandBiasPValue": 3.0, "rmsMapQ": 0.0, "mapq0Reads": 5, "mqRankSum": null, "readPositionRankSum": null, "genotypePriors": [], "genotypePosteriors": [], "vqslod": null, "culprit": null, "attributes": {}}, "sampleId": "NA12878", "sampleDescription": null, "processingDescription": null, "alleles": ["REF", "ALT"], "expectedAlleleDosage": null, "referenceReadDepth": null, "alternateReadDepth": null, "readDepth": null, "minReadDepth": null, "genotypeQuality": null, "genotypeLikelihoods": [], "nonReferenceLikelihoods": [], "strandBiasComponents": [0, 2], "splitFromMultiAllelic": false, "phased": false, "phaseSetId": null, "phaseQuality": null} failed with java.lang.IllegalArgumentException: requirement failed: Illegal strand bias components length. Must be empty or 4. In: {"variant": {"referenceName": "1", "start": 0, "end": 1, "names": [], "splitFromMultiAllelic": false, "referenceAllele": "A", "alternateAllele": "T", "quality": null, "filtersApplied": null, "filtersPassed": null, "filtersFailed": [], "annotation": null}, "referenceName": null, "start": null, "end": null, "variantCallingAnnotations": {"filtersApplied": null, "filtersPassed": null, "filtersFailed": [], "downsampled": null, "baseQRankSum": null, "fisherStrandBiasPValue": 3.0, "rmsMapQ": 0.0, "mapq0Reads": 5, "mqRankSum": null, "readPositionRankSum": null, "genotypePriors": [], "genotypePosteriors": [], "vqslod": null, "culprit": null, "attributes": {}}, "sampleId": "NA12878", "sampleDescription": null, "processingDescription": null, "alleles": ["REF", "ALT"], "expectedAlleleDosage": null, "referenceReadDepth": null, "alternateReadDepth": null, "readDepth": null, "minReadDepth": null, "genotypeQuality": null, "genotypeLikelihoods": [], "nonReferenceLikelihoods": [], "strandBiasComponents": [0, 2], "splitFromMultiAllelic": false, "phased": false, "phaseSetId": null, "phaseQuality": null}. VariantContextConverterSuite: - Convert htsjdk site-only SNV to ADAM - Convert somatic htsjdk site-only SNV to ADAM - Convert htsjdk site-only CNV to ADAM - Convert htsjdk SNV w/ genotypes w/ phase information to ADAM - Convert htsjdk SNV with different variant filters to ADAM - Convert htsjdk SNV with different genotype filters to ADAM - Convert ADAM site-only SNV to htsjdk - Convert ADAM SNV w/ genotypes to htsjdk - Convert ADAM SNV w/ genotypes but bad SB to htsjdk with strict validation - Convert ADAM SNV w/ genotypes but bad SB to htsjdk with lenient validation - Convert htsjdk multi-allelic sites-only SNVs to ADAM - Convert htsjdk multi-allelic SNVs to ADAM and back to htsjdk - Convert gVCF reference records to ADAM - Convert htsjdk variant context with no IDs to ADAM - Convert htsjdk variant context with one ID to ADAM - Convert htsjdk variant context with multiple IDs to ADAM - Convert ADAM variant context with no names to htsjdk - Convert ADAM variant context with one name to htsjdk - Convert ADAM variant context with multiple names to htsjdk - Convert ADAM variant context with null filters applied to htsjdk - Convert ADAM variant context with no filters applied to htsjdk - Convert ADAM variant context with passing filters to htsjdk - Convert ADAM variant context with failing filters to htsjdk - no phasing set going htsjdk->adam - phased but no phase set info going htsjdk->adam - set phase set and extract going htsjdk->adam - no allelic depth going htsjdk->adam - set allelic depth going htsjdk->adam - no gt read depth going htsjdk->adam - extract gt read depth going htsjdk->adam - no min gt read depth going htsjdk->adam - extract min gt read depth going htsjdk->adam - no genotype quality going htsjdk->adam - extract genotype quality going htsjdk->adam - no phred likelihood going htsjdk->adam - extract phred likelihoods going htsjdk->adam - no strand bias info going htsjdk->adam - extract strand bias info going htsjdk->adam - no filters going htsjdk->adam - filters passed going htsjdk->adam - extract single filter going htsjdk->adam - extract multiple filters going htsjdk->adam - no fisher strand bias going htsjdk->adam - extract fisher strand bias going htsjdk->adam - no rms mapping quality going htsjdk->adam - extract rms mapping quality going htsjdk->adam - no mq0 going htsjdk->adam - extract mq0 going htsjdk->adam - no gt read depth going adam->htsjdk - extract gt read depth going adam->htsjdk - throw iae if missing one component of gt read depth going adam->htsjdk - no depth going adam->htsjdk - extract depth going adam->htsjdk - no min depth going adam->htsjdk - extract min depth going adam->htsjdk - no quality going adam->htsjdk - extract quality going adam->htsjdk - no genotype likelihoods going adam->htsjdk - extract genotype likelihoods going adam->htsjdk - no strand bias going adam->htsjdk - malformed strand bias going adam->htsjdk - extract strand bias going adam->htsjdk - no phasing info going adam->htsjdk - unphased going adam->htsjdk - phased but no ps/pq going adam->htsjdk - phased but no pq going adam->htsjdk - phased but no ps going adam->htsjdk - phased going adam->htsjdk - no filter info going adam->htsjdk - if filters applied, must set passed/failed going adam->htsjdk - filters passed going adam->htsjdk - if filters failed, must set filters failed going adam->htsjdk - single filter failed going adam->htsjdk - multiple filters failed going adam->htsjdk - no fisher strand bias going adam->htsjdk - extract fisher strand bias going adam->htsjdk - no rms mapping quality going adam->htsjdk - extract rms mapping quality going adam->htsjdk - no mapping quality 0 reads going adam->htsjdk - extract mapping quality 0 reads going adam->htsjdk - no names set going htsjdk->adam - single name set going htsjdk->adam - multiple names set going htsjdk->adam - no quality going htsjdk->adam - quality set going htsjdk->adam - no filters applied going htsjdk->adam - filters applied and passed going htsjdk->adam - single filter applied and failed going htsjdk->adam - multiple filters applied and failed going htsjdk->adam - no names set adam->htsjdk - set a single name adam->htsjdk - set multiple names adam->htsjdk - no qual set adam->htsjdk - qual is set adam->htsjdk - no filters applied adam->htsjdk - null filters applied adam->htsjdk - filters passed adam->htsjdk - if filter failed, must have filters adam->htsjdk - single filter failed adam->htsjdk - multiple filters failed adam->htsjdk - no ancestral allele set going htsjdk->adam - ancestral allele set going htsjdk->adam - no dbsnp membership set going htsjdk->adam - dbsnp membership set going htsjdk->adam - no hapmap2 membership set going htsjdk->adam - hapmap2 membership set going htsjdk->adam - no hapmap3 membership set going htsjdk->adam - hapmap3 membership set going htsjdk->adam - no validated set going htsjdk->adam - validated set going htsjdk->adam - no 1000G membership set going htsjdk->adam - 1000G membership set going htsjdk->adam - not somatic going htsjdk->adam - somatic going htsjdk->adam - no allele count going htsjdk->adam - single allele count going htsjdk->adam - multiple allele counts going htsjdk->adam - no allele frequency going htsjdk->adam - single allele frequency going htsjdk->adam - single allele frequency is +Inf going htsjdk->adam - single allele frequency is -Inf going htsjdk->adam - multiple allele frequencies going htsjdk->adam - no CIGAR going htsjdk->adam - single CIGAR going htsjdk->adam - multiple CIGARs going htsjdk->adam - no read depth going htsjdk->adam - single read depth going htsjdk->adam - multiple read depths going htsjdk->adam - no forward read depth going htsjdk->adam - single forward read depth going htsjdk->adam - multiple forward read depths going htsjdk->adam - no reverse read depth going htsjdk->adam - single reverse read depth going htsjdk->adam - multiple reverse read depths going htsjdk->adam - no ancestral allele set adam->htsjdk - ancestral allele set adam->htsjdk - no dbsnp membership set adam->htsjdk - dbsnp membership set adam->htsjdk - no hapmap2 membership set adam->htsjdk - hapmap2 membership set adam->htsjdk - no hapmap3 membership set adam->htsjdk - hapmap3 membership set adam->htsjdk - no validated set adam->htsjdk - validated set adam->htsjdk - no 1000G membership set adam->htsjdk - 1000G membership set adam->htsjdk - no allele count set adam->htsjdk - allele count set adam->htsjdk - no allele frequency set adam->htsjdk - allele frequency set adam->htsjdk - no cigar set adam->htsjdk - cigar set adam->htsjdk - no read depth set adam->htsjdk - read depth set adam->htsjdk - read depth without reference read depth - reference read depth without read depth - no forward read depth set adam->htsjdk - forward read depth set adam->htsjdk - reference forward read depth without forward read depth - forward read depth without reference forward read depth - no reverse read depth set adam->htsjdk - reverse read depth set adam->htsjdk - reference reverse read depth without reverse read depth - reverse read depth without reference reverse read depth - VCF INFO attribute Number=0 Type=Flag adam->htsjdk - VCF INFO attribute Number=4 Type=Flag adam->htsjdk unsupported, strict !!! IGNORED !!! - VCF INFO attribute Number=1 Type=Integer adam->htsjdk - VCF INFO attribute Number=4 Type=Integer adam->htsjdk - VCF INFO attribute Number=A Type=Integer adam->htsjdk - VCF INFO attribute Number=R Type=Integer adam->htsjdk - VCF INFO attribute Number=R Type=String adam->htsjdk - VCF INFO attribute Number=G Type=String adam->htsjdk not supported - VCF INFO attribute Number=0 Type=Flag htsjdk->adam - VCF INFO attribute Number=1 Type=Integer htsjdk->adam - VCF INFO attribute Number=4 Type=Integer htsjdk->adam - VCF INFO attribute Number=4 Type=Float htsjdk->adam - VCF INFO attribute Number=A Type=Integer htsjdk->adam - VCF INFO attribute Number=R Type=Integer htsjdk->adam - VCF INFO attribute Number=R Type=String htsjdk->adam - VCF INFO attribute Number=G Type=String htsjdk->adam not supported - VCF FORMAT attribute Number=0 Type=Flag adam->htsjdk not supported - VCF FORMAT attribute Number=1 Type=Integer adam->htsjdk - VCF FORMAT attribute Number=4 Type=Integer adam->htsjdk - VCF FORMAT attribute Number=A Type=Integer adam->htsjdk - VCF FORMAT attribute Number=R Type=Integer adam->htsjdk - VCF FORMAT attribute Number=R Type=String adam->htsjdk - VCF FORMAT attribute Number=0 Type=Flag htsjdk->adam is not supported - VCF FORMAT attribute Number=1 Type=Integer htsjdk->adam - VCF FORMAT attribute Number=4 Type=Integer htsjdk->adam - VCF FORMAT attribute Number=4 Type=Float htsjdk->adam - VCF FORMAT attribute Number=A Type=Integer htsjdk->adam - VCF FORMAT attribute Number=R Type=Integer htsjdk->adam - VCF FORMAT attribute Number=R Type=String htsjdk->adam - VCF FORMAT attribute Number=G Type=String htsjdk->adam - respect end position for symbolic alts FastqRecordConverterSuite: - test read name suffix and index of pair must match - test parseReadInFastq, read suffix removal - test parseReadInFastq, read metadata removal - test parseReadInFastq, read quality shorter than read length, padded with B - test parseReadInFastq, read quality longer than read length - test parseReadInFastq, no read quality - testing FastqRecordConverter.convertPair with valid input - testing FastqRecordConverter.convertPair with 7-line invalid input - testing FastqRecordConverter.convertPair with invalid input: first read length and qual don't match - testing FastqRecordConverter.convertPair with invalid input: second read length and qual don't match - testing FastqRecordConverter.convertFragment with valid input - testing FastqRecordConverter.convertFragment with another valid input having /1, /2 suffixes - testing FastqRecordConverter.convertFragment with invalid input: different read names - testing FastqRecordConverter.convertRead with valid input - testing FastqRecordConverter.convertRead with valid input: setFirstOfPair set to true - testing FastqRecordConverter.convertRead with valid input: setSecondOfPair set to true - testing FastqRecordConverter.convertRead with valid input: setFirstOfPair and setSecondOfPair both true - testing FastqRecordConverter.convertRead with valid input, no qual, strict - testing FastqRecordConverter.convertRead with valid input, no qual, not strict AttributeSuite: - test SAMTagAndValue parsing - Attributes can be correctly re-encoded as text SAM tags GFF3HeaderWriterSuite: - write gff3 header pragma BinQualitiesSuite: - make a quality score bin - can't have a quality score bin with negative score - can't have a quality score bin with high score below low - can't have a quality score bin with high score above 255 - can't have a quality score bin with score outside - make a quality score bin from a string - quality score bin must have exactly 3 elements - quality score bin must be integers - must define at least one bin - build multiple bins - rewrite quality scores for a read - rewriting quality scores fails if bins overlap - rewriting quality scores fails if base is out of bounds - skip read if qualities are null - rewrite a read IndexedFastaFileSuite: - correctly generates sequence dictionary from .dict file - correctly gets sequence - fails when fai index is not provided 2019-09-04 11:45:51 WARN IndexedFastaFile:190 - Caught exception java.lang.NullPointerException when loading FASTA sequence dictionary. Using empty dictionary instead. - passes when dict is not provided and ValidationStringency = LENIENT SAMRecordConverterSuite: - testing the fields in an alignmentRecord obtained from a mapped samRecord conversion - testing the fields in an alignmentRecord obtained from an unmapped samRecord conversion - '*' quality gets nulled out - don't keep denormalized fields ADAMContextSuite: - ctr is accessible - load from an empty directory - sc.loadParquet should not fail on unmapped reads - sc.loadParquet should not load a file without a type specified - can read a small .SAM file - can read a small .SAM file with a bad header with lenient validation - loading a sam file with a bad header and strict stringency should fail - can read a small .CRAM file - can read a small .SAM with all attribute tag types - can filter a .SAM file based on quality - Can convert to phred - Can convert from phred - Can read a .gtf file - Can read a .bed file - Can read a BED 12 file - Can read a .narrowPeak file - Can read a .interval_list file 2019-09-04 11:45:55 WARN VariantContextConverter:1662 - Saw invalid info field java.lang.IllegalArgumentException: Multivalued flags are not supported for INFO lines: INFO=. Ignoring... 2019-09-04 11:45:55 WARN VariantContextConverter:2169 - Generating field extractor from header line INFO= failed: java.lang.IllegalArgumentException: Multivalue flags are not supported for INFO lines: INFO= - can read a small .vcf file with a validation issue - can read a small .vcf file 2019-09-04 11:45:55 WARN VCFInputFormat:218 - file:/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/2.11.12/test-classes/test.vcf.gz is not splittable, consider using block-compressed gzip (BGZF) - can read a gzipped .vcf file - can read a vcf file with an empty alt - can read a BGZF gzipped .vcf file with .gz file extension - can read a BGZF gzipped .vcf file with .bgz file extension - can read a vcf file with a projection - can read an uncompressed BCFv2.2 file !!! IGNORED !!! - can read a BGZF compressed BCFv2.2 file !!! IGNORED !!! - loadIndexedVcf with 1 ReferenceRegion - loadIndexedVcf with multiple ReferenceRegions - load block compressed interleaved fastq - import records from interleaved FASTQ: 1 - import records from interleaved FASTQ: 2 - import records from interleaved FASTQ: 3 - import records from interleaved FASTQ: 4 - import block compressed single fastq - import records from single ended FASTQ: 1 - import records from single ended FASTQ: 2 - import records from single ended FASTQ: 3 - import records from single ended FASTQ: 4 - filter on load using the filter2 API - saveAsParquet with file path - saveAsParquet with file path, block size, page size - saveAsParquet with save args - read a HLA fasta from GRCh38 - read a gzipped fasta file - read a fasta file with comments, gaps, and translation stops - loadIndexedBam with 1 ReferenceRegion - loadIndexedBam with multiple ReferenceRegions - loadIndexedBam with multiple ReferenceRegions and indexed bams - loadIndexedBam with multiple ReferenceRegions and a directory of indexed bams - loadIndexedBam should throw exception without an index file - loadIndexedBam should work with indexed file with index naming format .bai - loadIndexedBam glob should throw exception without an index file - loadBam with a glob - loadBam with a directory - load vcf with a glob - load vcf from a directory - load gvcf which contains a multi-allelic row from a directory - load and save gvcf which contains rows without likelihoods - parse annotations for multi-allelic rows - load parquet with globs - bad glob should fail - empty directory should fail - can read a SnpEff-annotated .vcf file - loadAlignments should not fail on single-end and paired-end fastq reads - load queryname sorted sam as fragments - load query grouped sam as fragments - load paired fastq - load paired fastq without cache - load paired fastq as fragments - load paired fastq as fragments without cache - load HTSJDK sequence dictionary - load Bedtools .genome file as sequence dictionary - load Bedtools .genome.txt file as sequence dictionary - load UCSC Genome Browser chromInfo.txt file as sequence dictionary - load unrecognized file extension as sequence dictionary fails - load BED features with Bedtools .genome file as sequence dictionary - load BED features with Bedtools .genome file as sequence dictionary, no matching features - convert program record - load program record from sam file - load alignments from data frame - load features from data frame - load fragments from data frame - load genotypes from data frame with default header lines - load genotypes from data frame with empty header lines - load reads from data frame - load sequences from data frame - load slices from data frame - load variant contexts from data frame with default header lines - load variant contexts from data frame with empty header lines - load variants from data frame with default header lines - load variants from data frame with empty header lines - load alignments with metadata from data frame - load features with metadata from data frame - load fragments with metadata from data frame - load genotypes with metadata from data frame - load variant contexts with metadata from data frame - load variants with metadata from data frame - read a fasta file with short sequences as sequences - read a fasta file with long sequences as sequences - read a fasta file with short sequences as slices - read a fasta file with long sequences as slices CycleCovariateSuite: - compute covariates for an unpaired read on the negative strand - compute covariates for a first-of-pair read on the negative strand - compute covariates for a second-of-pair read on the negative strand - compute covariates for an unpaired read on the positive strand - compute covariates for a first-of-pair read on the positive strand - compute covariates for a second-of-pair read on the positive strand ConsensusGeneratorFromKnownsSuite: - no consensuses for empty target - no consensuses for reads that don't overlap a target - return a consensus for read overlapping a single target RichCigarSuite: - moving 2 bp from a deletion to a match operator - moving 2 bp from a insertion to a match operator - moving 1 base in a two element cigar - move to start of read - process right clipped cigar - process left clipped cigar - process cigar clipped on both ends MDTaggingSuite: - test adding MDTags over boundary - test adding MDTags; reads span full contig - test adding MDTags; reads start inside first fragment - test adding MDTags; reads end inside last fragment - test adding MDTags; reads start inside first fragment and end inside last fragment - test adding MDTags; reads start and end in middle fragements 2019-09-04 11:46:47 WARN BlockManager:66 - Putting block rdd_5_3 failed due to exception java.lang.Exception: Contig chr2 not found in reference map with keys: chr1. 2019-09-04 11:46:47 WARN BlockManager:66 - Block rdd_5_3 could not be removed as it was not found on disk or in memory 2019-09-04 11:46:47 ERROR Executor:91 - Exception in task 3.0 in stage 2.0 (TID 11) java.lang.Exception: Contig chr2 not found in reference map with keys: chr1 at org.bdgenomics.adam.util.ReferenceContigMap$$anonfun$extract$1.apply(ReferenceContigMap.scala:63) at org.bdgenomics.adam.util.ReferenceContigMap$$anonfun$extract$1.apply(ReferenceContigMap.scala:63) at scala.collection.MapLike$class.getOrElse(MapLike.scala:128) at scala.collection.AbstractMap.getOrElse(Map.scala:59) at org.bdgenomics.adam.util.ReferenceContigMap.extract(ReferenceContigMap.scala:61) at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1$$anonfun$apply$2.apply(MDTagging.scala:76) at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1$$anonfun$apply$2.apply(MDTagging.scala:71) at scala.Option$WithFilter.map(Option.scala:207) at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1.apply(MDTagging.scala:71) at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1.apply(MDTagging.scala:69) at scala.collection.Iterator$$anon$11.next(Iterator.scala:410) at org.apache.spark.storage.memory.MemoryStore.putIterator(MemoryStore.scala:222) at org.apache.spark.storage.memory.MemoryStore.putIteratorAsValues(MemoryStore.scala:299) at org.apache.spark.storage.BlockManager$$anonfun$doPutIterator$1.apply(BlockManager.scala:1165) at org.apache.spark.storage.BlockManager$$anonfun$doPutIterator$1.apply(BlockManager.scala:1156) at org.apache.spark.storage.BlockManager.doPut(BlockManager.scala:1091) at org.apache.spark.storage.BlockManager.doPutIterator(BlockManager.scala:1156) at org.apache.spark.storage.BlockManager.getOrElseUpdate(BlockManager.scala:882) at org.apache.spark.rdd.RDD.getOrCompute(RDD.scala:335) at org.apache.spark.rdd.RDD.iterator(RDD.scala:286) at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90) at org.apache.spark.scheduler.Task.run(Task.scala:123) at org.apache.spark.executor.Executor$TaskRunner$$anonfun$10.apply(Executor.scala:408) at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1360) at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:414) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) at java.lang.Thread.run(Thread.java:748) 2019-09-04 11:46:47 WARN TaskSetManager:66 - Lost task 3.0 in stage 2.0 (TID 11, localhost, executor driver): java.lang.Exception: Contig chr2 not found in reference map with keys: chr1 at org.bdgenomics.adam.util.ReferenceContigMap$$anonfun$extract$1.apply(ReferenceContigMap.scala:63) at org.bdgenomics.adam.util.ReferenceContigMap$$anonfun$extract$1.apply(ReferenceContigMap.scala:63) at scala.collection.MapLike$class.getOrElse(MapLike.scala:128) at scala.collection.AbstractMap.getOrElse(Map.scala:59) at org.bdgenomics.adam.util.ReferenceContigMap.extract(ReferenceContigMap.scala:61) at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1$$anonfun$apply$2.apply(MDTagging.scala:76) at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1$$anonfun$apply$2.apply(MDTagging.scala:71) at scala.Option$WithFilter.map(Option.scala:207) at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1.apply(MDTagging.scala:71) at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1.apply(MDTagging.scala:69) at scala.collection.Iterator$$anon$11.next(Iterator.scala:410) at org.apache.spark.storage.memory.MemoryStore.putIterator(MemoryStore.scala:222) at org.apache.spark.storage.memory.MemoryStore.putIteratorAsValues(MemoryStore.scala:299) at org.apache.spark.storage.BlockManager$$anonfun$doPutIterator$1.apply(BlockManager.scala:1165) at org.apache.spark.storage.BlockManager$$anonfun$doPutIterator$1.apply(BlockManager.scala:1156) at org.apache.spark.storage.BlockManager.doPut(BlockManager.scala:1091) at org.apache.spark.storage.BlockManager.doPutIterator(BlockManager.scala:1156) at org.apache.spark.storage.BlockManager.getOrElseUpdate(BlockManager.scala:882) at org.apache.spark.rdd.RDD.getOrCompute(RDD.scala:335) at org.apache.spark.rdd.RDD.iterator(RDD.scala:286) at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90) at org.apache.spark.scheduler.Task.run(Task.scala:123) at org.apache.spark.executor.Executor$TaskRunner$$anonfun$10.apply(Executor.scala:408) at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1360) at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:414) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) at java.lang.Thread.run(Thread.java:748) 2019-09-04 11:46:47 ERROR TaskSetManager:70 - Task 3 in stage 2.0 failed 1 times; aborting job - try realigning a read on a missing contig, stringency == STRICT 2019-09-04 11:46:47 WARN MDTagging:190 - Caught exception when processing read chr2: java.lang.Exception: Contig chr2 not found in reference map with keys: chr1 - try realigning a read on a missing contig, stringency == LENIENT FileExtensionsSuite: - ends in gzip extension - is a vcf extension PhredUtilsSuite: - convert low phred score to log and back - convert high phred score to log and back - convert overflowing phred score to log and back and clip - convert negative zero log probability to phred and clip - round trip log probabilities ReadDatasetSuite: - create a new read genomic dataset - create a new read genomic dataset with sequence dictionary - save as parquet - round trip as parquet - save as fastq - save as single file fastq - filter read genomic dataset by reference region - broadcast region join reads and features - shuffle region join reads and features - convert reads to alignments - convert reads to sequences - convert reads to slices SmithWatermanSuite: - gather max position from simple scoring matrix - gather max position from irregular scoring matrix - gather max position from irregular scoring matrix with deletions - score simple alignment with constant gap - score irregular scoring matrix - score irregular scoring matrix with indel - can unroll cigars correctly - execute simple trackback - execute trackback with indel - run end to end smith waterman for simple reads - run end to end smith waterman for short sequences with indel - run end to end smith waterman for longer sequences with snp - run end to end smith waterman for longer sequences with short indel - run end to end smith waterman for shorter sequence in longer sequence - run end to end smith waterman for shorter sequence in longer sequence, with indel - smithWaterman - simple alignment MdTagSuite: - null md tag - zero length md tag - md tag with non-digit initial value - md tag invalid base - md tag, pure insertion - md tag, pure insertion, test 2 - md tag pure insertion equality - md tag equality and hashcode - valid md tags - get start of read with no mismatches or deletions - get start of read with no mismatches, but with a deletion at the start - get start of read with mismatches at the start - get end of read with no mismatches or deletions - check that mdtag and rich record return same end - get end of read with no mismatches, but a deletion at end - CIGAR with N operator - CIGAR with multiple N operators - CIGAR with P operators - Get correct matches for mdtag with insertion - Get correct matches for mdtag with mismatches and insertion - Get correct matches for mdtag with insertion between mismatches - Get correct matches for mdtag with intron between mismatches - Get correct matches for mdtag with intron and deletion between mismatches - Throw exception when number of deleted bases in mdtag disagrees with CIGAR - Get correct matches for mdtag with mismatch, insertion and deletion - Get correct matches for mdtag with mismatches, insertion and deletion - Get correct matches for MDTag with mismatches and deletions - Get correct matches base from MDTag and CIGAR with N - get end of read with mismatches and a deletion at end - get correct string out of mdtag with no mismatches - get correct string out of mdtag with mismatches at start - get correct string out of mdtag with deletion at end - get correct string out of mdtag with mismatches at end - get correct string out of complex mdtag - check complex mdtag - get gapped reference - move a cigar alignment by two for a read - rewrite alignment to all matches - rewrite alignment to two mismatches followed by all matches - rewrite alignment to include a deletion but otherwise all matches - rewrite alignment to include an insertion at the start of the read but otherwise all matches - create new md tag from read vs. reference, perfect match - create new md tag from read vs. reference, perfect alignment match, 1 mismatch - create new md tag from read vs. reference, alignment with deletion - create new md tag from read vs. reference, alignment with insert - handle '=' and 'X' operators - CIGAR/MD tag mismatch should cause errors GenomicDatasetSuite: - processing a command that is the spark root directory should return an absolute path - processing a command that is just a single word should do nothing - processing a command should handle arguments that include spaces - processing a command that is a single substitution should succeed - processing a command that is multiple words should split the string - process a command that is multiple words with a replacement - process a command that is multiple words with multiple replacements ParallelFileMergerSuite: - cannot write both empty gzip block and cram eof - buffer size must be non-negative - get the size of several files - block size must be positive and non-zero when trying to merge files - must provide files to merge - if two files are both below the block size, they should merge into one shard - merge two files where one is greater than the block size - merge a sharded sam file - merge a sharded bam file - merge a sharded cram file - can't turn a negative index into a path - generate a path from an index IndelTableSuite: - check for indels in a region with known indels - check for indels in a contig that doesn't exist - check for indels in a region without known indels - build indel table from rdd of variants SnpTableSuite: - create an empty snp table - create a snp table from variants on multiple contigs - create a snp table from a larger set of variants - perform lookups on multi-contig snp table - perform lookups on larger snp table RealignIndelsSuite: - map reads to targets - checking mapping to targets for artificial reads - checking alternative consensus for artificial reads - checking extraction of reference from reads - checking realigned reads for artificial input - checking realigned reads for artificial input with reference file - checking realigned reads for artificial input using knowns - checking realigned reads for artificial input using knowns and reads - skip realigning reads if target is highly covered - skip realignment if target is an insufficient LOD improvement - realign reads to an insertion - test mismatch quality scoring - test mismatch quality scoring for no mismatches - test mismatch quality scoring for offset - test mismatch quality scoring with early exit - test mismatch quality scoring after unpacking read - we shouldn't try to realign a region with no target - we shouldn't try to realign reads with no indel evidence - test OP and OC tags - realign a read with an insertion that goes off the end of the read - if realigning a target doesn't improve the LOD, don't drop reads - extract seq/qual from a read with no clipped bases - extract seq/qual from a read with clipped bases at start - extract seq/qual from a read with clipped bases at end - if unclip is selected, don't drop base when extracting from a read with clipped bases - get cigar and coordinates for read that spans indel, no clipped bases - get cigar and coordinates for read that spans deletion, clipped bases at start - get cigar and coordinates for read that falls wholly before insertion - get cigar and coordinates for read that falls wholly after insertion - get cigar and coordinates for read that falls wholly after deletion - get cigar and coordinates for read that partially spans insertion, no clipped bases - get cigar and coordinates for read that partially spans insertion, clipped bases at end - get cigar and coordinates for read that partially spans insertion, clipped bases both ends BaseQualityRecalibrationSuite: - BQSR Test Input #1 w/ VCF Sites without caching - BQSR Test Input #1 w/ VCF Sites with caching - BQSR Test Input #1 w/ VCF Sites with serialized caching DinucCovariateSuite: - computing dinucleotide pairs for a single base sequence should return (N,N) - compute dinucleotide pairs for a string of all valid bases - compute dinucleotide pairs for a string with an N - compute covariates for a read on the negative strand - compute covariates for a read on the positive strand SequenceDictionarySuite: - Convert from sam sequence record and back - Convert from SAM sequence dictionary file (with extra fields) - merge into existing dictionary - Convert from SAM sequence dictionary and back - Can retrieve sequence by name - SequenceDictionary's with same single element are equal - SequenceDictionary's with same two elements are equals - SequenceDictionary's with different elements are unequal - SequenceDictionaries with same elements in different order are compatible - isCompatible tests equality on overlap - The addition + works correctly - The append operation ++ works correctly - ContainsRefName works correctly for different string types - Apply on name works correctly for different String types - convert from sam sequence record and back - convert from sam sequence dictionary and back - conversion to sam sequence dictionary has correct sort order - load sequence dictionary from VCF file - empty sequence dictionary must be empty - test filter to reference name - test filter to reference names - test filter to reference name by function GenomicPositionPartitionerSuite: - partitions the UNMAPPED ReferencePosition into the top partition - if we do not have a contig for a record, we throw an IAE - partitioning into N pieces on M total sequence length, where N > M, results in M partitions - correctly partitions a single dummy sequence into two pieces - correctly counts cumulative lengths - correctly partitions positions across two dummy sequences - test that we can range partition ADAMRecords - test that we can range partition ADAMRecords indexed by sample - test that simple partitioning works okay on a reasonable set of ADAMRecords - test indexed ReferencePosition partitioning works on a set of indexed ADAMRecords CoverageSuite: - Convert to coverage from valid Feature - Convert to coverage from valid Feature with sampleId - Convert to coverage from Feature with null/empty contigName fails with correct error - Convert to coverage from Feature with no start/end position fails with correct error - Convert to coverage from Feature with no score fails with correct error InnerTreeRegionJoinSuite: - Ensure same reference regions get passed together - Overlapping reference regions - Multiple reference regions do not throw exception RichAlignmentRecordSuite: - Unclipped Start - Unclipped End - tags contains optional fields - read overlap unmapped read - read overlap reference position - read overlap same position different contig VariantDatasetSuite: - union two variant genomic datasets together - round trip to parquet - save and reload from partitioned parquet - use broadcast join to pull down variants mapped to targets - use right outer broadcast join to pull down variants mapped to targets - use shuffle join to pull down variants mapped to targets - use right outer shuffle join to pull down variants mapped to targets - use left outer shuffle join to pull down variants mapped to targets - use full outer shuffle join to pull down variants mapped to targets - use shuffle join with group by to pull down variants mapped to targets - use right outer shuffle join with group by to pull down variants mapped to targets - convert back to variant contexts - load parquet to sql, save, re-read from avro 2019-09-04 11:47:47 WARN DatasetBoundSliceDataset:190 - Saving directly as Parquet from SQL. Options other than compression codec are ignored. - transform variants to slice genomic dataset - transform variants to coverage genomic dataset - transform variants to feature genomic dataset - transform variants to fragment genomic dataset - transform variants to read genomic dataset - transform variants to genotype genomic dataset - transform variants to variant context genomic dataset - filter RDD bound variants to filters passed - filter dataset bound variants to filters passed - filter RDD bound variants by quality - filter dataset bound variants by quality - filter RDD bound variants by read depth - filter dataset bound variants by read depth - filter RDD bound variants by reference read depth - filter dataset bound variants by reference read depth - filter RDD bound single nucleotide variants - filter dataset bound single nucleotide variants - filter RDD bound multiple nucleotide variants - filter dataset bound multiple nucleotide variants - filter RDD bound indel variants - filter dataset bound indel variants - filter RDD bound variants to single nucleotide variants - filter dataset bound variants to single nucleotide variants - filter RDD bound variants to multiple nucleotide variants - filter dataset bound variants to multiple nucleotide variants - filter RDD bound variants to indel variants - filter dataset bound variants to indel variants - transform dataset via java API Run completed in 7 minutes, 29 seconds. Total number of tests run: 1175 Suites: completed 68, aborted 0 Tests: succeeded 1175, failed 0, canceled 0, ignored 5, pending 0 All tests passed. [INFO] [INFO] >>> scoverage-maven-plugin:1.1.1:report (default-cli) > [scoverage]test @ adam-core-spark2_2.11 >>> [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-core-spark2_2.11 --- [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-core-spark2_2.11 --- [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-core-spark2_2.11 --- [INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala added. [INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/generated-sources/src/main/scala added. [INFO] [INFO] --- exec-maven-plugin:1.5.0:java (generate-scala-products) @ adam-core-spark2_2.11 --- SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder". SLF4J: Defaulting to no-operation (NOP) logger implementation SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details. [INFO] [INFO] --- exec-maven-plugin:1.5.0:java (generate-scala-projection-fields) @ adam-core-spark2_2.11 --- SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder". SLF4J: Defaulting to no-operation (NOP) logger implementation SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details. [INFO] [INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-core-spark2_2.11 --- [INFO] Modified 2 of 202 .scala files [INFO] [INFO] --- scoverage-maven-plugin:1.1.1:pre-compile (default-cli) @ adam-core-spark2_2.11 --- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-core-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-core-spark2_2.11 --- [INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/java:-1: info: compiling [INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala:-1: info: compiling [INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/generated-sources/src/main/scala:-1: info: compiling [INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/generated-sources/annotations:-1: info: compiling [INFO] Compiling 138 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/2.11.12/scoverage-classes at 1567622889782 [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicDataset.scala:3099: warning: no valid targets for annotation on value uTag - it is discarded unused. You may specify targets with meta-annotations, e.g. @(transient @getter) [WARNING] @transient val uTag: TypeTag[U] [WARNING] ^ [INFO] [info] Cleaning datadir [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/scoverage-data] [INFO] [info] Beginning coverage instrumentation [WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos. [WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos. [WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos. [WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos. [WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos. [WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos. [WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos. [WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos. [WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos. [WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos. [WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos. [WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos. [WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos. [WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos. [WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos. [WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos. [WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos. [WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos. [WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos. [WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos. [WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos. [WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos. [WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos. [WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos. [WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos. [WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos. [WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos. [WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos. [WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos. [WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos. [WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos. [WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos. [INFO] [info] Instrumentation completed [17075 statements] [INFO] [info] Wrote instrumentation file [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/scoverage-data/scoverage.coverage.xml] [INFO] [info] Will write measurement data to [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/scoverage-data] [WARNING] warning: there were 89 deprecation warnings; re-run with -deprecation for details [WARNING] warning: there were 5 feature warnings; re-run with -feature for details [WARNING] three warnings found [INFO] prepare-compile in 0 s [INFO] compile in 40 s [INFO] [INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-core-spark2_2.11 --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 6 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/2.11.12/scoverage-classes [INFO] [INFO] --- scoverage-maven-plugin:1.1.1:post-compile (default-cli) @ adam-core-spark2_2.11 --- [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-core-spark2_2.11 --- [INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala added. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-core-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 152 resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-core-spark2_2.11 --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-core-spark2_2.11 --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-core-spark2_2.11 --- [INFO] Tests are skipped. [INFO] [INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-core-spark2_2.11 --- Discovery starting. Discovery completed in 2 seconds, 544 milliseconds. Run starting. Expected test count is: 1175 RepairPartitionsSuite: - don't pull from the first partition - properly handle pulling from an empty iterator - gets a single read from the partition if there are no other reads in the pair - gets all the reads from a pair from the start of a partition - properly handle dropping from an empty iterator - don't drop from the first partition - drop a single read from the partition if there are no other reads in the pair - drops all the reads from a pair from the start of a partition - only append to the first partition - drop a single read from the partition and append read when in the middle - drop reads from the start and don't append when in the last partition - can't have more records than number of partitions - unroll array for broadcast 2019-09-04 11:48:55 WARN Utils:66 - Your hostname, research-jenkins-worker-09 resolves to a loopback address: 127.0.1.1; using 192.168.10.31 instead (on interface enp4s0f0) 2019-09-04 11:48:55 WARN Utils:66 - Set SPARK_LOCAL_IP if you need to bind to another address 2019-09-04 11:48:55 WARN NativeCodeLoader:62 - Unable to load native-hadoop library for your platform... using builtin-java classes where applicable - move pairs around an rdd FlagStatSuite: - Standard FlagStat test ModPartitionerSuite: - report number of partitions correctly - partition a number that is lower than the number of partitions and positive - partition a number that is greater than the number of partitions and positive - partition a number that is lower than the number of partitions and negative - partition a number that is greater than the number of partitions and negative - fire an exception if input is not an integer TwoBitFileSuite: - correctly read sequence from .2bit file - correctly return masked sequences from .2bit file - correctly return Ns from .2bit file - correctly calculates sequence dictionary NonoverlappingRegionsSuite: - alternating returns an alternating seq of items - Single region returns itself - Two adjacent regions will be merged - Nonoverlapping regions will all be returned - Many overlapping regions will all be merged - ADAMRecords return proper references ReferencePositionSuite: - create reference position from mapped read - create reference position from variant - create reference position from genotype - create reference position from variant starting at vcf 0 - create reference position from genotype starting at vcf 0 ConsensusGeneratorFromReadsSuite: - checking search for consensus list for artificial reads FragmentConverterSuite: - build a fragment collector and convert to a read - if a fragment isn't associated with a contig, don't get a fragment collector - convert an rdd of discontinuous fragments, all from the same contig - convert an rdd of contiguous fragments, all from the same contig - convert an rdd of varied fragments from multiple contigs FileMergerSuite: - cannot write both empty gzip block and cram eof - buffer size must be non-negative AlignmentRecordDatasetSuite: - sorting reads - unmapped reads go at the end when sorting - coverage does not fail on unmapped reads 2019-09-04 11:49:10 WARN Utils:66 - Truncated the string representation of a plan since it was too large. This behavior can be adjusted by setting 'spark.debug.maxToStringFields' in SparkEnv.conf. - computes coverage - computes coverage with multiple samples - merges adjacent records with equal coverage values - sorting reads by reference index - round trip from ADAM to SAM and back to ADAM produces equivalent Read values - round trip with single CRAM file produces equivalent Read values - round trip with sharded CRAM file produces equivalent Read values - SAM conversion sets read mapped flag properly - load long FASTQ reads - load FASTQ with no bases - convert malformed FASTQ (no quality scores) => SAM => well-formed FASTQ => SAM - round trip from ADAM to FASTQ and back to ADAM produces equivalent Read values - round trip from ADAM to paired-FASTQ and back to ADAM produces equivalent Read values - writing a small file with tags should produce the expected result - writing a small sorted file as SAM should produce the expected result - writing unordered sam from unordered sam - writing ordered sam from unordered sam - write single sam file back - write single bam file back - saveAsParquet with save args, sequence dictionary, and read group dictionary - load parquet to sql, save, re-read from avro - load from sam, save as partitioned parquet, and re-read from partitioned parquet - save as SAM format - save as sorted SAM format - save as BAM format - save as sorted BAM format - save as FASTQ format - save as ADAM parquet format - saveAsSam SAM format - saveAsSam SAM format single file - saveAsSam sorted SAM format single file - saveAsSam BAM format - saveAsSam BAM format single file - saveAsSam sorted BAM format single file - saveAsFastq - saveAsFastq as single file - saveAsFastq with original base qualities - saveAsFastq sorted by read name - saveAsFastq sorted by read name with original base qualities 2019-09-04 11:49:41 WARN RDDBoundAlignmentRecordDataset:190 - Found 20 read names that don't occur exactly twice: 1x: 20 Samples: simread:1:237728409:true simread:1:195211965:false simread:1:163841413:false simread:1:231911906:false simread:1:26472783:false simread:1:165341382:true simread:1:240344442:true simread:1:50683371:false simread:1:240997787:true simread:1:14397233:false simread:1:207027738:true simread:1:20101800:true simread:1:101556378:false simread:1:37577445:false simread:1:189606653:true simread:1:5469106:true simread:1:186794283:true simread:1:89554252:false simread:1:153978724:false simread:1:169801933:true - saveAsFastq paired FASTQ 2019-09-04 11:49:42 WARN RDDBoundAlignmentRecordDataset:190 - Found 20 read names that don't occur exactly twice: 1x: 20 Samples: simread:1:237728409:true simread:1:195211965:false simread:1:163841413:false simread:1:231911906:false simread:1:26472783:false simread:1:165341382:true simread:1:240344442:true simread:1:50683371:false simread:1:240997787:true simread:1:14397233:false simread:1:207027738:true simread:1:20101800:true simread:1:101556378:false simread:1:37577445:false simread:1:189606653:true simread:1:5469106:true simread:1:186794283:true simread:1:89554252:false simread:1:153978724:false simread:1:169801933:true - saveAsPairedFastq 2019-09-04 11:49:43 WARN RDDBoundAlignmentRecordDataset:190 - Found 20 read names that don't occur exactly twice: 1x: 20 Samples: simread:1:237728409:true simread:1:195211965:false simread:1:163841413:false simread:1:231911906:false simread:1:26472783:false simread:1:165341382:true simread:1:240344442:true simread:1:50683371:false simread:1:240997787:true simread:1:14397233:false simread:1:207027738:true simread:1:20101800:true simread:1:101556378:false simread:1:37577445:false simread:1:189606653:true simread:1:5469106:true simread:1:186794283:true simread:1:89554252:false simread:1:153978724:false simread:1:169801933:true - saveAsPairedFastq as single files - don't lose any reads when piping as SAM 2019-09-04 11:49:54 WARN OutFormatterRunner:190 - Piped command List(sleep, 10) timed out after 5 seconds. 2019-09-04 11:49:54 WARN OutFormatterRunner:190 - Piped command List(sleep, 10) timed out after 5 seconds. - lose all records when a command times out - lose no records without a timeout 2019-09-04 11:50:15 WARN OutFormatterRunner:190 - Piped command List(python, /tmp/adamTestMvnb0spyFX/spark-f73b1784-8214-4f16-8794-c320c18e1699/userFiles-c916d76a-bee1-472e-bd00-367209f1cc27/timeout.py) timed out after 5 seconds. 2019-09-04 11:50:15 WARN OutFormatterRunner:190 - Piped command List(python, /tmp/adamTestMvnb0spyFX/spark-f73b1784-8214-4f16-8794-c320c18e1699/userFiles-c916d76a-bee1-472e-bd00-367209f1cc27/timeout.py) timed out after 5 seconds. - lose some records when a command times out - don't lose any reads when piping as SAM using java pipe - don't lose any reads when piping as BAM - don't lose any reads when piping fastq to sam - can properly set environment variables inside of a pipe - read vcf from alignment record pipe !!! IGNORED !!! - use broadcast join to pull down reads mapped to targets - use broadcast join against to pull down reads mapped to targets - use right outer broadcast join to pull down reads mapped to targets - use right outer broadcast join against to pull down reads mapped to targets - use shuffle join with feature spanning partitions - use shuffle join to pull down reads mapped to targets - use shuffle join with flankSize to pull down reads mapped close to targets - use right outer shuffle join to pull down reads mapped to targets - use left outer shuffle join to pull down reads mapped to targets - use full outer shuffle join to pull down reads mapped to targets - use shuffle join with group by to pull down reads mapped to targets - use right outer shuffle join with group by to pull down reads mapped to targets - cannot provide empty quality score bins - cannot provide bins with a gap - cannot provide overlapping bins - binning quality scores in reads succeeds even if reads have no quality scores - bin quality scores in reads - union two read files together - test k-mer counter - test dataset based k-mer counter - transform reads to slice genomic dataset - transform reads to coverage genomic dataset - transform reads to feature genomic dataset - transform reads to fragment genomic dataset - transform reads to genotype genomic dataset loading /tmp/adamTestMvnb0spyFX/TempSuite2680867690676998127.adam as parquet into RDD... loading /tmp/adamTestMvnb0spyFX/TempSuite3780836668371200176.adam as parquet into RDD... - transform reads to variant genomic dataset - cannot have a null processing step ID - convert a processing description to htsjdk - GenomicDataset.sort does not fail on unmapped reads - GenomicDataset.sortLexicographically does not fail on unmapped reads - left normalize indels - running base recalibration with downsampling doesn't drop reads - filter RDD bound alignments by MAPQ - filter dataset bound alignments by MAPQ - filter RDD bound unaligned alignments - filter dataset bound unaligned alignments - filter RDD bound unpaired alignments - filter dataset bound unpaired alignments - filter RDD bound duplicate alignments - filter dataset bound duplicate alignments - filter RDD bound alignments to primary alignments - filter dataset bound alignments to primary alignments - filter RDD bound alignments to read group - filter dataset bound alignments to read group - filter RDD bound alignments to read groups - filter dataset bound alignments to read groups - filter RDD bound alignments to sample - filter dataset bound alignments to sample - filter RDD bound alignments to samples - filter dataset bound alignments to samples - sort by read name - transform dataset via java API - convert alignments to reads SingleReadBucketSuite: - convert unmapped pair to fragment - convert proper pair to fragment - convert read pair to fragment with first of pair chimeric read RecalibrationTableSuite: - look up quality scores in table FlankSlicesSuite: - don't put flanks on non-adjacent slices - put flanks on adjacent slices InterleavedFastqInputFormatSuite: - interleaved FASTQ hadoop reader: interleaved_fastq_sample1.ifq->interleaved_fastq_sample1.ifq.output - interleaved FASTQ hadoop reader: interleaved_fastq_sample2.ifq->interleaved_fastq_sample2.ifq.output - interleaved FASTQ hadoop reader: interleaved_fastq_sample3.ifq->interleaved_fastq_sample3.ifq.output - interleaved FASTQ hadoop reader: interleaved_fastq_sample4.ifq->interleaved_fastq_sample4.ifq.output - interleaved FASTQ hadoop reader: interleaved_fastq_sample5.ifq->interleaved_fastq_sample5.ifq.output TreeRegionJoinSuite: - run a join between data on a single contig ReferenceRegionSuite: - cannot create an empty predicate - parse empty string throws IllegalArgumentException - parse contigName only string into reference regions - parse to end strings into reference regions - parse string into reference regions - contains(: ReferenceRegion) - contains(: ReferencePosition) - merge - overlaps and covers - overlapsBy and coversBy - distance(: ReferenceRegion) - distance(: ReferencePosition) - unstrandedDistance - subtract fails on non-overlapping and non-covering regions - subtract - create region from unmapped read fails - create region from read with null alignment positions fails - create stranded region from unmapped read fails - create stranded region from read with null alignment positions fails - create stranded region from read with null alignment strand fails - create stranded region from read on forward strand - create stranded region from read on reverse strand - create region from mapped read contains read start and end - validate that adjacent regions can be merged - validate that non-adjacent regions cannot be merged - validate that nearby regions can be merged - validate that non-nearby regions cannot be merged - compute convex hull of two sets - region name is sanitized when creating region from read - intersection fails on non-overlapping regions - intersection fails when minOverlap is not met - compute intersection - overlap tests for oriented reference region - check the width of a reference region - make a reference region for a variant or genotype - make a reference region for a variant or genotype starting at VCF 0 - uniformly pad a reference region - uniformly pad a reference region into negative coordinate space, ensure non negative start - unevenly pad a reference region - unevenly pad a reference region into negative coordinate space, ensure non negative start - can build an open ended reference region - can build an open ended reference region with strand - can build a reference region with an open start position - can build a reference region with an open start position with strand - can build a reference region that covers the entirety of a contig - can build a reference region that covers the entirety of a contig with strand - convert a genotype and then get the reference region - create region from feature with null alignment positions fails - create stranded region from feature with null alignment positions fails - create stranded region from feature with null alignment strand fails - create stranded region from feature on forward strand - create stranded region from feature on reverse strand AlignmentRecordConverterSuite: - testing the fields in a converted ADAM Read - converting a read with null quality is OK - convert a read to fastq - reverse complement reads when converting to fastq - converting to fastq with unmapped reads where read reverse complemented flag (Ox10) was NOT set - converting to fastq with unmapped reads where reverse complemented flag (0x10) was set - converting a fragment with no alignments should yield unaligned reads - converting a fragment with alignments should restore the alignments - read negative strand is propagated even when not mapped CoverageDatasetSuite: - correctly saves coverage - can read a bed file to coverage - correctly filters coverage with predicate - keeps sample metadata - can read a bed file with multiple samples to coverage - correctly flatmaps coverage without aggregated bins - correctly flatmaps coverage with aggregated bins - collapses coverage records in one partition - approximately collapses coverage records in multiple partitions 2019-09-04 11:51:09 WARN DatasetBoundSliceDataset:190 - Saving directly as Parquet from SQL. Options other than compression codec are ignored. - transform coverage to slice genomic dataset - transform coverage to feature genomic dataset - transform coverage to fragment genomic dataset - transform coverage to read genomic dataset - transform coverage to genotype genomic dataset - transform coverage to variant genomic dataset - transform coverage to variant context genomic dataset - copy coverage rdd - copy coverage dataset - copy coverage rdd without sequence dictionary - copy coverage dataset without sequence dictionary - transform dataset via java API RecalibratorSuite: - don't replace quality if quality was null - if no covariates, return alignment - skip recalibration if base is below quality threshold - recalibrate changed bases above quality threshold SliceDatasetSuite: - create a new slice genomic dataset - create a new slice genomic dataset with sequence dictionary - merge slices into a sequence genomic dataset - save as parquet - round trip as parquet - save as fasta - save as single file fasta - convert slices to reads - convert slices to sequences GenotypeDatasetSuite: - union two genotype genomic datasets together - round trip to parquet - round trip to partitioned parquet - use broadcast join to pull down genotypes mapped to targets - use right outer broadcast join to pull down genotypes mapped to targets - use shuffle join to pull down genotypes mapped to targets - use right outer shuffle join to pull down genotypes mapped to targets - use left outer shuffle join to pull down genotypes mapped to targets - use full outer shuffle join to pull down genotypes mapped to targets - use shuffle join with group by to pull down genotypes mapped to targets - use right outer shuffle join with group by to pull down genotypes mapped to targets - convert back to variant contexts - load parquet to sql, save, re-read from avro 2019-09-04 11:51:36 WARN DatasetBoundSliceDataset:190 - Saving directly as Parquet from SQL. Options other than compression codec are ignored. - transform genotypes to slice genomic dataset - transform genotypes to coverage genomic dataset - transform genotypes to feature genomic dataset - transform genotypes to fragment genomic dataset - transform genotypes to read genomic dataset - transform genotypes to variant genomic dataset - transform genotypes to variant context genomic dataset - loading genotypes then converting to variants yields same output as loading variants - filter RDD bound genotypes to genotype filters passed - filter dataset bound genotypes to genotype filters passed - filter RDD bound genotypes by genotype quality - filter dataset bound genotypes by genotype quality - filter RDD bound genotypes by read depth - filter dataset bound genotypes by read depth - filter RDD bound genotypes by alternate read depth - filter dataset bound genotypes by alternate read depth - filter RDD bound genotypes by reference read depth - filter dataset bound genotypes by reference read depth - filter RDD bound genotypes by sample - filter dataset bound genotypes by sample - filter RDD bound genotypes by samples - filter dataset bound genotypes by samples - filter RDD bound no call genotypes - filter dataset no call genotypes - round trip gVCF END attribute without nested variant annotations rdd bound - round trip gVCF END attribute without nested variant annotations dataset bound - round trip gVCF END attribute with nested variant annotations rdd bound - round trip gVCF END attribute with nested variant annotations dataset bound - transform dataset via java API FragmentDatasetSuite: - don't lose any reads when piping interleaved fastq to sam - don't lose any reads when piping tab5 to sam - don't lose any reads when piping tab6 to sam - use broadcast join to pull down fragments mapped to targets - use right outer broadcast join to pull down fragments mapped to targets - use shuffle join to pull down fragments mapped to targets - use right outer shuffle join to pull down fragments mapped to targets - use left outer shuffle join to pull down fragments mapped to targets - use full outer shuffle join to pull down fragments mapped to targets - use shuffle join with group by to pull down fragments mapped to targets - use right outer shuffle join with group by to pull down fragments mapped to targets - bin quality scores in fragments - union two genomic datasets of fragments together - load parquet to sql, save, re-read from avro - transform fragments to slice genomic dataset - transform fragments to coverage genomic dataset - transform fragments to feature genomic dataset - transform fragments to read genomic dataset - transform fragments to genotype genomic dataset - transform fragments to variant genomic dataset - transform fragments to variant context genomic dataset - paired read names with index sequences in read names can group into fragments - interleaved paired read names with index sequences in read names can group into fragments - interleaved paired read names with index sequences in read names as fragments - transform dataset via java API - dataset and rdd conversion to alignments are equivalent SingleFastqInputFormatSuite: - FASTQ hadoop reader: fastq_sample1.fq->single_fastq_sample1.fq.output - FASTQ hadoop reader: fastq_sample2.fq->single_fastq_sample2.fq.output - FASTQ hadoop reader: fastq_sample3.fq->single_fastq_sample3.fq.output - FASTQ hadoop reader: fastq_sample4.fq->single_fastq_sample4.fq.output VariantContextDatasetSuite: - load a gvcf with a missing info field set to . - union two variant context genomic datasets together - can write, then read in .vcf file - can write as a single file via simple saveAsVcf method, then read in .vcf file - can write as a single file via full saveAsVcf method, then read in .vcf file - transform a vcf file with bad header - read a vcf file with multi-allelic variants to split - support VCFs with +Inf/-Inf float values - support VCFs with `nan` instead of `NaN` float values - don't lose any variants when piping as VCF - pipe works with empty partitions - don't lose any non-default VCF header lines or attributes when piping as VCF - save a file sorted by contig index - save a lexicographically sorted file - save a multiallelic gvcf !!! IGNORED !!! - test metadata - save sharded bgzip vcf - save bgzip vcf as single file - can't save file with non-vcf extension - transform variant contexts to slice genomic dataset - transform variant contexts to coverage genomic dataset - transform variant contexts to feature genomic dataset - transform variant contexts to fragment genomic dataset - transform variant contexts to read genomic dataset - transform variant contexts to genotype genomic dataset - transform variant contexts to variant genomic dataset - save and reload from partitioned parquet - transform dataset via java API ConsensusSuite: - test the insertion of a consensus insertion into a reference - test the insertion of a consensus deletion into a reference - inserting empty consensus returns the reference SequenceDatasetSuite: - create a new sequence genomic dataset - create a new sequence genomic dataset with sequence dictionary - save as parquet - round trip as parquet - save as fasta - save as single file fasta - convert sequences to reads - convert sequences to slices - slice sequences to a maximum length - slice sequences shorter than maximum length - filter sequences by overlapping region - filter sequences failing to overlap region - filter sequences by overlapping regions - filter sequences failing to overlap regions - slice sequences overlapping a smaller region - slice sequences overlapping a larger region - slice sequences failing to overlap a region - slice sequences overlapping smaller regions - slice sequences overlapping larger regions - slice sequences failing to overlap regions AttributeUtilsSuite: - parseTags returns a reasonable set of tagStrings - parseTags works with NumericSequence tagType - empty string is parsed as zero tagStrings - incorrectly formatted tag throws an exception - string tag with a ':' in it is correctly parsed - oq string tag with many ':' in it is correctly parsed - oq string tag with a ',' in it is correctly parsed - if a tag is an array but doesn't define it's format, throw MarkDuplicatesSuite: - single read - reads at different positions - reads at the same position - reads at the same position with clipping - reads on reverse strand - unmapped reads - read pairs - read pairs with fragments - quality scores - read pairs that cross chromosomes - single fragment - fragments at different positions - fragments at the same position - fragments at the same position with clipping - fragments on reverse strand - unmapped fragments - read pairs as fragments - read pairs with fragments as fragments - chimeric fragments - inverse pairs - supplemental reads TranscriptEffectConverterSuite: - parse empty transcript effect - parse empty transcript effect strict validation stringency - parse invalid transcript effect - parse invalid transcript effect strict validation stringency - parse transcript effect - parse empty list VCF ANN attribute - parse empty list VCF ANN attribute strict validation stringency - parse empty string VCF ANN attribute - parse empty string VCF ANN attribute strict validation stringency - parse invalid VCF ANN attribute - parse invalid VCF ANN attribute strict validation stringency - parse VCF ANN attribute with one transcript effect - parse VCF ANN attribute with multiple transcript effects - convert to transcript effect from null VCF ANN attribute in variant context - convert to transcript effect from empty list VCF ANN attribute in variant context - convert to transcript effect from empty list VCF ANN attribute in variant context strict validation stringency 2019-09-04 11:53:03 WARN TranscriptEffectConverter$:190 - Could not convert VCF INFO reserved key ANN value to TranscriptEffect, caught java.lang.NumberFormatException: For input string: "not a number". 2019-09-04 11:53:03 WARN TranscriptEffectConverter$:190 - Could not convert VCF INFO reserved key ANN value to TranscriptEffect, caught java.lang.NumberFormatException: For input string: "not a number". - convert to transcript effect from empty string VCF ANN attribute in variant context - convert to transcript effect from empty string VCF ANN attribute in variant context strict validation stringency - convert to transcript effect from invalid VCF ANN attribute in variant context - convert to transcript effect from invalid VCF ANN attribute in variant context strict validation stringency - convert to transcript effect from VCF ANN attribute with invalid number in variant context lenient validation stringency - convert to transcript effect from VCF ANN attribute with invalid fraction in variant context lenient validation stringency - convert to transcript effect from VCF ANN attribute with invalid number in variant context strict validation stringency - convert to transcript effect from VCF ANN attribute with invalid fraction in variant context strict validation stringency - convert to transcript effect from VCF ANN attribute in variant context different alt allele - convert to transcript effect from VCF ANN attribute in variant context same alt allele - convert to transcript effect from VCF ANN attribute in variant context multiple effects same alt allele - convert transcript effect to VCF ANN attribute value - convert transcript effect with null fields to VCF ANN attribute value 2019-09-04 11:53:03 WARN TranscriptEffectConverter$:190 - Incorrect fractional value ?/2, missing numerator - convert transcript effect with incorrect fractional value to VCF ANN attribute value IndelRealignmentTargetSuite: - checking simple realignment target - creating simple target from read with deletion - creating simple target from read with insertion - joining simple realignment targets on same chr - joining simple realignment targets on different chr throws exception - creating targets from three intersecting reads, same indel - creating targets from three intersecting reads, two different indel - creating targets from two disjoint reads - creating targets for artificial reads: one-by-one - creating targets for artificial reads: all-at-once (merged) - creating indel targets for mason reads - additional indel targets taken from consensus generator NormalizationUtilsSuite: - cannot move an indel left if there are no bases to it's left - move a simple indel to farthest position left until bases run out - move a simple indel to farthest position left, past length of indel - cannot move a left normalized indel in a short tandem repeat - move an indel in a short tandem repeat - move an indel in a short tandem repeat of more than 2 bases, where shift is not an integer multiple of repeated sequence length - moving a simple read with single deletion that cannot shift - shift an indel left by 0 in a cigar - shift an indel left by 1 in a cigar - do not left align a complex read which is already left aligned ReadGroupDictionarySuite: - simple conversion to and from sam read group - sample name must be set - simple equality checks - get samples from read group dictionary - empty read group is empty - merging a dictionary with itself should work - round trip a record with all attributes set RightOuterTreeRegionJoinSuite: - Ensure same reference regions get passed together - Overlapping reference regions InnerShuffleRegionJoinSuite: - Overlapping reference regions - Multiple reference regions do not throw exception FeatureDatasetSuite: - round trip GTF format - save GTF as GFF3 format - save GTF as BED format - save GTF as IntervalList format - save GTF as NarrowPeak format - save GFF3 as GTF format - save GFF3 as BED format - save GFF3 as IntervalList format - save GFF3 as NarrowPeak format - round trip GFF3 format - ignore FASTA sequence in GFF3 file - save BED as GTF format - save BED as GFF3 format - save BED as IntervalList format - save BED as NarrowPeak format - round trip BED6 format - keeps sample metadata - round trip BED12 format - save to UCSC BED format - save IntervalList as GTF format - save IntervalList as GFF3 format - save IntervalList as BED format - save IntervalList as IntervalList format - save IntervalList as NarrowPeak format - round trip IntervalList format - save NarrowPeak as GTF format - save NarrowPeak as GFF3 format - save NarrowPeak as BED format - save NarrowPeak as IntervalList format - save NarrowPeak as NarrowPeak format - round trip NarrowPeak format - sort by reference - sort by reference and feature fields - sort gene features by reference and gene structure - sort transcript features by reference and gene structure - sort exon features by reference and gene structure - sort intron features by reference and gene structure - correctly flatmaps CoverageDataset from FeatureDataset - use broadcast join to pull down features mapped to targets - use right outer broadcast join to pull down features mapped to targets - use shuffle join to pull down features mapped to targets - use right outer shuffle join to pull down features mapped to targets - use left outer shuffle join to pull down features mapped to targets - use full outer shuffle join to pull down features mapped to targets - use shuffle join with group by to pull down features mapped to targets - use right outer shuffle join with group by to pull down features mapped to targets - union two feature rdds together - obtain sequence dictionary contig lengths from header in IntervalList format - don't lose any features when piping as BED format - don't lose any features when piping as GTF format - don't lose any features when piping as GFF3 format - don't lose any features when piping as NarrowPeak format - load parquet to sql, save, re-read from avro - load partitioned parquet to sql, save, re-read from avro 2019-09-04 11:53:44 WARN DatasetBoundSliceDataset:190 - Saving directly as Parquet from SQL. Options other than compression codec are ignored. - transform features to slice genomic dataset - transform features to coverage genomic dataset - transform features to fragment genomic dataset - transform features to read genomic dataset - transform features to genotype genomic dataset - transform features to variant genomic dataset - transform features to variant context genomic dataset - filter RDD bound features by feature type - filter dataset bound features by feature type - filter RDD bound features by feature types - filter dataset bound features by feature types - filter RDD bound features by gene - filter dataset bound features by gene - filter RDD bound features by genes - filter dataset bound features by genes - filter RDD bound features by transcript - filter dataset bound features by transcript - filter RDD bound features by transcripts - filter dataset bound features by transcripts - filter RDD bound features by exon - filter dataset bound features by exon - filter RDD bound features by exons - filter dataset bound features by exons - filter RDD bound features by score - filter dataset bound features by score - filter RDD bound features by parent - filter dataset bound features by parent - filter RDD bound features by parents - filter dataset bound features by parents - filter RDD bound features by attribute - filter dataset bound features by attribute - transform dataset via java API AlphabetSuite: - test size of a case-sensitive alphabet - test apply of a case-sensitive alphabet - test reverse complement of a case-sensitive alphabet - test exact reverse complement of a case-sensitive alphabet - test size of a case-insensitive alphabet - test apply of a case-insensitive alphabet - test reverse complement of a case-insensitive alphabet - test exact reverse complement of a case-insensitive alphabet - DNA alphabet - map unknown bases to N SortedGenomicDatasetSuite: - testing that partition and sort provide correct outputs - testing copartition maintains or adds sort - testing that we don't drop any data on the right side even though it doesn't map to a partition on the left - testing that sorted shuffleRegionJoin matches unsorted - testing that sorted fullOuterShuffleRegionJoin matches unsorted - testing that sorted rightOuterShuffleRegionJoin matches unsorted - testing that sorted leftOuterShuffleRegionJoin matches unsorted - testing that we can persist the sorted knowledge VariantContextConverterSuite: - Convert htsjdk site-only SNV to ADAM - Convert somatic htsjdk site-only SNV to ADAM - Convert htsjdk site-only CNV to ADAM - Convert htsjdk SNV w/ genotypes w/ phase information to ADAM - Convert htsjdk SNV with different variant filters to ADAM - Convert htsjdk SNV with different genotype filters to ADAM - Convert ADAM site-only SNV to htsjdk - Convert ADAM SNV w/ genotypes to htsjdk - Convert ADAM SNV w/ genotypes but bad SB to htsjdk with strict validation 2019-09-04 11:54:02 WARN VariantContextConverter:2300 - Applying annotation extraction function to {"variant": {"referenceName": "1", "start": 0, "end": 1, "names": [], "splitFromMultiAllelic": false, "referenceAllele": "A", "alternateAllele": "T", "quality": null, "filtersApplied": null, "filtersPassed": null, "filtersFailed": [], "annotation": null}, "referenceName": null, "start": null, "end": null, "variantCallingAnnotations": {"filtersApplied": null, "filtersPassed": null, "filtersFailed": [], "downsampled": null, "baseQRankSum": null, "fisherStrandBiasPValue": 3.0, "rmsMapQ": 0.0, "mapq0Reads": 5, "mqRankSum": null, "readPositionRankSum": null, "genotypePriors": [], "genotypePosteriors": [], "vqslod": null, "culprit": null, "attributes": {}}, "sampleId": "NA12878", "sampleDescription": null, "processingDescription": null, "alleles": ["REF", "ALT"], "expectedAlleleDosage": null, "referenceReadDepth": null, "alternateReadDepth": null, "readDepth": null, "minReadDepth": null, "genotypeQuality": null, "genotypeLikelihoods": [], "nonReferenceLikelihoods": [], "strandBiasComponents": [0, 2], "splitFromMultiAllelic": false, "phased": false, "phaseSetId": null, "phaseQuality": null} failed with java.lang.IllegalArgumentException: requirement failed: Illegal strand bias components length. Must be empty or 4. In: {"variant": {"referenceName": "1", "start": 0, "end": 1, "names": [], "splitFromMultiAllelic": false, "referenceAllele": "A", "alternateAllele": "T", "quality": null, "filtersApplied": null, "filtersPassed": null, "filtersFailed": [], "annotation": null}, "referenceName": null, "start": null, "end": null, "variantCallingAnnotations": {"filtersApplied": null, "filtersPassed": null, "filtersFailed": [], "downsampled": null, "baseQRankSum": null, "fisherStrandBiasPValue": 3.0, "rmsMapQ": 0.0, "mapq0Reads": 5, "mqRankSum": null, "readPositionRankSum": null, "genotypePriors": [], "genotypePosteriors": [], "vqslod": null, "culprit": null, "attributes": {}}, "sampleId": "NA12878", "sampleDescription": null, "processingDescription": null, "alleles": ["REF", "ALT"], "expectedAlleleDosage": null, "referenceReadDepth": null, "alternateReadDepth": null, "readDepth": null, "minReadDepth": null, "genotypeQuality": null, "genotypeLikelihoods": [], "nonReferenceLikelihoods": [], "strandBiasComponents": [0, 2], "splitFromMultiAllelic": false, "phased": false, "phaseSetId": null, "phaseQuality": null}. - Convert ADAM SNV w/ genotypes but bad SB to htsjdk with lenient validation - Convert htsjdk multi-allelic sites-only SNVs to ADAM - Convert htsjdk multi-allelic SNVs to ADAM and back to htsjdk - Convert gVCF reference records to ADAM - Convert htsjdk variant context with no IDs to ADAM - Convert htsjdk variant context with one ID to ADAM - Convert htsjdk variant context with multiple IDs to ADAM - Convert ADAM variant context with no names to htsjdk - Convert ADAM variant context with one name to htsjdk - Convert ADAM variant context with multiple names to htsjdk - Convert ADAM variant context with null filters applied to htsjdk - Convert ADAM variant context with no filters applied to htsjdk - Convert ADAM variant context with passing filters to htsjdk - Convert ADAM variant context with failing filters to htsjdk - no phasing set going htsjdk->adam - phased but no phase set info going htsjdk->adam - set phase set and extract going htsjdk->adam - no allelic depth going htsjdk->adam - set allelic depth going htsjdk->adam - no gt read depth going htsjdk->adam - extract gt read depth going htsjdk->adam - no min gt read depth going htsjdk->adam - extract min gt read depth going htsjdk->adam - no genotype quality going htsjdk->adam - extract genotype quality going htsjdk->adam - no phred likelihood going htsjdk->adam - extract phred likelihoods going htsjdk->adam - no strand bias info going htsjdk->adam - extract strand bias info going htsjdk->adam - no filters going htsjdk->adam - filters passed going htsjdk->adam - extract single filter going htsjdk->adam - extract multiple filters going htsjdk->adam - no fisher strand bias going htsjdk->adam - extract fisher strand bias going htsjdk->adam - no rms mapping quality going htsjdk->adam - extract rms mapping quality going htsjdk->adam - no mq0 going htsjdk->adam - extract mq0 going htsjdk->adam - no gt read depth going adam->htsjdk - extract gt read depth going adam->htsjdk - throw iae if missing one component of gt read depth going adam->htsjdk - no depth going adam->htsjdk - extract depth going adam->htsjdk - no min depth going adam->htsjdk - extract min depth going adam->htsjdk - no quality going adam->htsjdk - extract quality going adam->htsjdk - no genotype likelihoods going adam->htsjdk - extract genotype likelihoods going adam->htsjdk - no strand bias going adam->htsjdk - malformed strand bias going adam->htsjdk - extract strand bias going adam->htsjdk - no phasing info going adam->htsjdk - unphased going adam->htsjdk - phased but no ps/pq going adam->htsjdk - phased but no pq going adam->htsjdk - phased but no ps going adam->htsjdk - phased going adam->htsjdk - no filter info going adam->htsjdk - if filters applied, must set passed/failed going adam->htsjdk - filters passed going adam->htsjdk - if filters failed, must set filters failed going adam->htsjdk - single filter failed going adam->htsjdk - multiple filters failed going adam->htsjdk - no fisher strand bias going adam->htsjdk - extract fisher strand bias going adam->htsjdk - no rms mapping quality going adam->htsjdk - extract rms mapping quality going adam->htsjdk - no mapping quality 0 reads going adam->htsjdk - extract mapping quality 0 reads going adam->htsjdk - no names set going htsjdk->adam - single name set going htsjdk->adam - multiple names set going htsjdk->adam - no quality going htsjdk->adam - quality set going htsjdk->adam - no filters applied going htsjdk->adam - filters applied and passed going htsjdk->adam - single filter applied and failed going htsjdk->adam - multiple filters applied and failed going htsjdk->adam - no names set adam->htsjdk - set a single name adam->htsjdk - set multiple names adam->htsjdk - no qual set adam->htsjdk - qual is set adam->htsjdk - no filters applied adam->htsjdk - null filters applied adam->htsjdk - filters passed adam->htsjdk - if filter failed, must have filters adam->htsjdk - single filter failed adam->htsjdk - multiple filters failed adam->htsjdk - no ancestral allele set going htsjdk->adam - ancestral allele set going htsjdk->adam - no dbsnp membership set going htsjdk->adam - dbsnp membership set going htsjdk->adam - no hapmap2 membership set going htsjdk->adam - hapmap2 membership set going htsjdk->adam - no hapmap3 membership set going htsjdk->adam - hapmap3 membership set going htsjdk->adam - no validated set going htsjdk->adam - validated set going htsjdk->adam - no 1000G membership set going htsjdk->adam - 1000G membership set going htsjdk->adam - not somatic going htsjdk->adam - somatic going htsjdk->adam - no allele count going htsjdk->adam - single allele count going htsjdk->adam - multiple allele counts going htsjdk->adam - no allele frequency going htsjdk->adam - single allele frequency going htsjdk->adam - single allele frequency is +Inf going htsjdk->adam - single allele frequency is -Inf going htsjdk->adam - multiple allele frequencies going htsjdk->adam - no CIGAR going htsjdk->adam - single CIGAR going htsjdk->adam - multiple CIGARs going htsjdk->adam - no read depth going htsjdk->adam - single read depth going htsjdk->adam - multiple read depths going htsjdk->adam - no forward read depth going htsjdk->adam - single forward read depth going htsjdk->adam - multiple forward read depths going htsjdk->adam - no reverse read depth going htsjdk->adam - single reverse read depth going htsjdk->adam - multiple reverse read depths going htsjdk->adam - no ancestral allele set adam->htsjdk - ancestral allele set adam->htsjdk - no dbsnp membership set adam->htsjdk - dbsnp membership set adam->htsjdk - no hapmap2 membership set adam->htsjdk - hapmap2 membership set adam->htsjdk - no hapmap3 membership set adam->htsjdk - hapmap3 membership set adam->htsjdk - no validated set adam->htsjdk - validated set adam->htsjdk - no 1000G membership set adam->htsjdk - 1000G membership set adam->htsjdk - no allele count set adam->htsjdk - allele count set adam->htsjdk - no allele frequency set adam->htsjdk - allele frequency set adam->htsjdk - no cigar set adam->htsjdk - cigar set adam->htsjdk - no read depth set adam->htsjdk - read depth set adam->htsjdk - read depth without reference read depth - reference read depth without read depth - no forward read depth set adam->htsjdk - forward read depth set adam->htsjdk - reference forward read depth without forward read depth - forward read depth without reference forward read depth - no reverse read depth set adam->htsjdk - reverse read depth set adam->htsjdk - reference reverse read depth without reverse read depth - reverse read depth without reference reverse read depth - VCF INFO attribute Number=0 Type=Flag adam->htsjdk - VCF INFO attribute Number=4 Type=Flag adam->htsjdk unsupported, strict !!! IGNORED !!! - VCF INFO attribute Number=1 Type=Integer adam->htsjdk - VCF INFO attribute Number=4 Type=Integer adam->htsjdk - VCF INFO attribute Number=A Type=Integer adam->htsjdk - VCF INFO attribute Number=R Type=Integer adam->htsjdk - VCF INFO attribute Number=R Type=String adam->htsjdk - VCF INFO attribute Number=G Type=String adam->htsjdk not supported - VCF INFO attribute Number=0 Type=Flag htsjdk->adam - VCF INFO attribute Number=1 Type=Integer htsjdk->adam - VCF INFO attribute Number=4 Type=Integer htsjdk->adam - VCF INFO attribute Number=4 Type=Float htsjdk->adam - VCF INFO attribute Number=A Type=Integer htsjdk->adam - VCF INFO attribute Number=R Type=Integer htsjdk->adam - VCF INFO attribute Number=R Type=String htsjdk->adam - VCF INFO attribute Number=G Type=String htsjdk->adam not supported - VCF FORMAT attribute Number=0 Type=Flag adam->htsjdk not supported - VCF FORMAT attribute Number=1 Type=Integer adam->htsjdk - VCF FORMAT attribute Number=4 Type=Integer adam->htsjdk - VCF FORMAT attribute Number=A Type=Integer adam->htsjdk - VCF FORMAT attribute Number=R Type=Integer adam->htsjdk - VCF FORMAT attribute Number=R Type=String adam->htsjdk - VCF FORMAT attribute Number=0 Type=Flag htsjdk->adam is not supported - VCF FORMAT attribute Number=1 Type=Integer htsjdk->adam - VCF FORMAT attribute Number=4 Type=Integer htsjdk->adam - VCF FORMAT attribute Number=4 Type=Float htsjdk->adam - VCF FORMAT attribute Number=A Type=Integer htsjdk->adam - VCF FORMAT attribute Number=R Type=Integer htsjdk->adam - VCF FORMAT attribute Number=R Type=String htsjdk->adam - VCF FORMAT attribute Number=G Type=String htsjdk->adam - respect end position for symbolic alts FastqRecordConverterSuite: - test read name suffix and index of pair must match - test parseReadInFastq, read suffix removal - test parseReadInFastq, read metadata removal - test parseReadInFastq, read quality shorter than read length, padded with B - test parseReadInFastq, read quality longer than read length - test parseReadInFastq, no read quality - testing FastqRecordConverter.convertPair with valid input - testing FastqRecordConverter.convertPair with 7-line invalid input - testing FastqRecordConverter.convertPair with invalid input: first read length and qual don't match - testing FastqRecordConverter.convertPair with invalid input: second read length and qual don't match - testing FastqRecordConverter.convertFragment with valid input - testing FastqRecordConverter.convertFragment with another valid input having /1, /2 suffixes - testing FastqRecordConverter.convertFragment with invalid input: different read names - testing FastqRecordConverter.convertRead with valid input - testing FastqRecordConverter.convertRead with valid input: setFirstOfPair set to true - testing FastqRecordConverter.convertRead with valid input: setSecondOfPair set to true - testing FastqRecordConverter.convertRead with valid input: setFirstOfPair and setSecondOfPair both true - testing FastqRecordConverter.convertRead with valid input, no qual, strict - testing FastqRecordConverter.convertRead with valid input, no qual, not strict AttributeSuite: - test SAMTagAndValue parsing - Attributes can be correctly re-encoded as text SAM tags GFF3HeaderWriterSuite: - write gff3 header pragma BinQualitiesSuite: - make a quality score bin - can't have a quality score bin with negative score - can't have a quality score bin with high score below low - can't have a quality score bin with high score above 255 - can't have a quality score bin with score outside - make a quality score bin from a string - quality score bin must have exactly 3 elements - quality score bin must be integers - must define at least one bin - build multiple bins - rewrite quality scores for a read - rewriting quality scores fails if bins overlap - rewriting quality scores fails if base is out of bounds - skip read if qualities are null - rewrite a read IndexedFastaFileSuite: - correctly generates sequence dictionary from .dict file - correctly gets sequence - fails when fai index is not provided 2019-09-04 11:54:03 WARN IndexedFastaFile:190 - Caught exception java.lang.NullPointerException when loading FASTA sequence dictionary. Using empty dictionary instead. - passes when dict is not provided and ValidationStringency = LENIENT SAMRecordConverterSuite: - testing the fields in an alignmentRecord obtained from a mapped samRecord conversion - testing the fields in an alignmentRecord obtained from an unmapped samRecord conversion - '*' quality gets nulled out - don't keep denormalized fields ADAMContextSuite: - ctr is accessible - load from an empty directory - sc.loadParquet should not fail on unmapped reads - sc.loadParquet should not load a file without a type specified - can read a small .SAM file - can read a small .SAM file with a bad header with lenient validation - loading a sam file with a bad header and strict stringency should fail - can read a small .CRAM file - can read a small .SAM with all attribute tag types - can filter a .SAM file based on quality - Can convert to phred - Can convert from phred - Can read a .gtf file - Can read a .bed file - Can read a BED 12 file - Can read a .narrowPeak file - Can read a .interval_list file 2019-09-04 11:54:07 WARN VariantContextConverter:1662 - Saw invalid info field java.lang.IllegalArgumentException: Multivalued flags are not supported for INFO lines: INFO=. Ignoring... 2019-09-04 11:54:07 WARN VariantContextConverter:2169 - Generating field extractor from header line INFO= failed: java.lang.IllegalArgumentException: Multivalue flags are not supported for INFO lines: INFO= - can read a small .vcf file with a validation issue - can read a small .vcf file 2019-09-04 11:54:07 WARN VCFInputFormat:218 - file:/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/2.11.12/test-classes/test.vcf.gz is not splittable, consider using block-compressed gzip (BGZF) - can read a gzipped .vcf file - can read a vcf file with an empty alt - can read a BGZF gzipped .vcf file with .gz file extension - can read a BGZF gzipped .vcf file with .bgz file extension - can read a vcf file with a projection - can read an uncompressed BCFv2.2 file !!! IGNORED !!! - can read a BGZF compressed BCFv2.2 file !!! IGNORED !!! - loadIndexedVcf with 1 ReferenceRegion - loadIndexedVcf with multiple ReferenceRegions - load block compressed interleaved fastq - import records from interleaved FASTQ: 1 - import records from interleaved FASTQ: 2 - import records from interleaved FASTQ: 3 - import records from interleaved FASTQ: 4 - import block compressed single fastq - import records from single ended FASTQ: 1 - import records from single ended FASTQ: 2 - import records from single ended FASTQ: 3 - import records from single ended FASTQ: 4 - filter on load using the filter2 API - saveAsParquet with file path - saveAsParquet with file path, block size, page size - saveAsParquet with save args - read a HLA fasta from GRCh38 - read a gzipped fasta file - read a fasta file with comments, gaps, and translation stops - loadIndexedBam with 1 ReferenceRegion - loadIndexedBam with multiple ReferenceRegions - loadIndexedBam with multiple ReferenceRegions and indexed bams - loadIndexedBam with multiple ReferenceRegions and a directory of indexed bams - loadIndexedBam should throw exception without an index file - loadIndexedBam should work with indexed file with index naming format .bai - loadIndexedBam glob should throw exception without an index file - loadBam with a glob - loadBam with a directory - load vcf with a glob - load vcf from a directory - load gvcf which contains a multi-allelic row from a directory - load and save gvcf which contains rows without likelihoods - parse annotations for multi-allelic rows - load parquet with globs - bad glob should fail - empty directory should fail - can read a SnpEff-annotated .vcf file - loadAlignments should not fail on single-end and paired-end fastq reads - load queryname sorted sam as fragments - load query grouped sam as fragments - load paired fastq - load paired fastq without cache - load paired fastq as fragments - load paired fastq as fragments without cache - load HTSJDK sequence dictionary - load Bedtools .genome file as sequence dictionary - load Bedtools .genome.txt file as sequence dictionary - load UCSC Genome Browser chromInfo.txt file as sequence dictionary - load unrecognized file extension as sequence dictionary fails - load BED features with Bedtools .genome file as sequence dictionary - load BED features with Bedtools .genome file as sequence dictionary, no matching features - convert program record - load program record from sam file - load alignments from data frame - load features from data frame - load fragments from data frame - load genotypes from data frame with default header lines - load genotypes from data frame with empty header lines - load reads from data frame - load sequences from data frame - load slices from data frame - load variant contexts from data frame with default header lines - load variant contexts from data frame with empty header lines - load variants from data frame with default header lines - load variants from data frame with empty header lines - load alignments with metadata from data frame - load features with metadata from data frame - load fragments with metadata from data frame - load genotypes with metadata from data frame - load variant contexts with metadata from data frame - load variants with metadata from data frame - read a fasta file with short sequences as sequences - read a fasta file with long sequences as sequences - read a fasta file with short sequences as slices - read a fasta file with long sequences as slices CycleCovariateSuite: - compute covariates for an unpaired read on the negative strand - compute covariates for a first-of-pair read on the negative strand - compute covariates for a second-of-pair read on the negative strand - compute covariates for an unpaired read on the positive strand - compute covariates for a first-of-pair read on the positive strand - compute covariates for a second-of-pair read on the positive strand ConsensusGeneratorFromKnownsSuite: - no consensuses for empty target - no consensuses for reads that don't overlap a target - return a consensus for read overlapping a single target RichCigarSuite: - moving 2 bp from a deletion to a match operator - moving 2 bp from a insertion to a match operator - moving 1 base in a two element cigar - move to start of read - process right clipped cigar - process left clipped cigar - process cigar clipped on both ends MDTaggingSuite: - test adding MDTags over boundary - test adding MDTags; reads span full contig - test adding MDTags; reads start inside first fragment - test adding MDTags; reads end inside last fragment - test adding MDTags; reads start inside first fragment and end inside last fragment - test adding MDTags; reads start and end in middle fragements 2019-09-04 11:54:55 WARN BlockManager:66 - Putting block rdd_5_3 failed due to exception java.lang.Exception: Contig chr2 not found in reference map with keys: chr1. 2019-09-04 11:54:55 WARN BlockManager:66 - Block rdd_5_3 could not be removed as it was not found on disk or in memory 2019-09-04 11:54:55 ERROR Executor:91 - Exception in task 3.0 in stage 2.0 (TID 11) java.lang.Exception: Contig chr2 not found in reference map with keys: chr1 at org.bdgenomics.adam.util.ReferenceContigMap$$anonfun$extract$1.apply(ReferenceContigMap.scala:63) at org.bdgenomics.adam.util.ReferenceContigMap$$anonfun$extract$1.apply(ReferenceContigMap.scala:63) at scala.collection.MapLike$class.getOrElse(MapLike.scala:128) at scala.collection.AbstractMap.getOrElse(Map.scala:59) at org.bdgenomics.adam.util.ReferenceContigMap.extract(ReferenceContigMap.scala:61) at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1$$anonfun$apply$2.apply(MDTagging.scala:76) at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1$$anonfun$apply$2.apply(MDTagging.scala:71) at scala.Option$WithFilter.map(Option.scala:207) at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1.apply(MDTagging.scala:71) at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1.apply(MDTagging.scala:69) at scala.collection.Iterator$$anon$11.next(Iterator.scala:410) at org.apache.spark.storage.memory.MemoryStore.putIterator(MemoryStore.scala:222) at org.apache.spark.storage.memory.MemoryStore.putIteratorAsValues(MemoryStore.scala:299) at org.apache.spark.storage.BlockManager$$anonfun$doPutIterator$1.apply(BlockManager.scala:1165) at org.apache.spark.storage.BlockManager$$anonfun$doPutIterator$1.apply(BlockManager.scala:1156) at org.apache.spark.storage.BlockManager.doPut(BlockManager.scala:1091) at org.apache.spark.storage.BlockManager.doPutIterator(BlockManager.scala:1156) at org.apache.spark.storage.BlockManager.getOrElseUpdate(BlockManager.scala:882) at org.apache.spark.rdd.RDD.getOrCompute(RDD.scala:335) at org.apache.spark.rdd.RDD.iterator(RDD.scala:286) at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90) at org.apache.spark.scheduler.Task.run(Task.scala:123) at org.apache.spark.executor.Executor$TaskRunner$$anonfun$10.apply(Executor.scala:408) at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1360) at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:414) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) at java.lang.Thread.run(Thread.java:748) 2019-09-04 11:54:56 WARN TaskSetManager:66 - Lost task 3.0 in stage 2.0 (TID 11, localhost, executor driver): java.lang.Exception: Contig chr2 not found in reference map with keys: chr1 at org.bdgenomics.adam.util.ReferenceContigMap$$anonfun$extract$1.apply(ReferenceContigMap.scala:63) at org.bdgenomics.adam.util.ReferenceContigMap$$anonfun$extract$1.apply(ReferenceContigMap.scala:63) at scala.collection.MapLike$class.getOrElse(MapLike.scala:128) at scala.collection.AbstractMap.getOrElse(Map.scala:59) at org.bdgenomics.adam.util.ReferenceContigMap.extract(ReferenceContigMap.scala:61) at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1$$anonfun$apply$2.apply(MDTagging.scala:76) at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1$$anonfun$apply$2.apply(MDTagging.scala:71) at scala.Option$WithFilter.map(Option.scala:207) at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1.apply(MDTagging.scala:71) at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1.apply(MDTagging.scala:69) at scala.collection.Iterator$$anon$11.next(Iterator.scala:410) at org.apache.spark.storage.memory.MemoryStore.putIterator(MemoryStore.scala:222) at org.apache.spark.storage.memory.MemoryStore.putIteratorAsValues(MemoryStore.scala:299) at org.apache.spark.storage.BlockManager$$anonfun$doPutIterator$1.apply(BlockManager.scala:1165) at org.apache.spark.storage.BlockManager$$anonfun$doPutIterator$1.apply(BlockManager.scala:1156) at org.apache.spark.storage.BlockManager.doPut(BlockManager.scala:1091) at org.apache.spark.storage.BlockManager.doPutIterator(BlockManager.scala:1156) at org.apache.spark.storage.BlockManager.getOrElseUpdate(BlockManager.scala:882) at org.apache.spark.rdd.RDD.getOrCompute(RDD.scala:335) at org.apache.spark.rdd.RDD.iterator(RDD.scala:286) at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90) at org.apache.spark.scheduler.Task.run(Task.scala:123) at org.apache.spark.executor.Executor$TaskRunner$$anonfun$10.apply(Executor.scala:408) at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1360) at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:414) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) at java.lang.Thread.run(Thread.java:748) 2019-09-04 11:54:56 ERROR TaskSetManager:70 - Task 3 in stage 2.0 failed 1 times; aborting job - try realigning a read on a missing contig, stringency == STRICT 2019-09-04 11:54:56 WARN MDTagging:190 - Caught exception when processing read chr2: java.lang.Exception: Contig chr2 not found in reference map with keys: chr1 - try realigning a read on a missing contig, stringency == LENIENT FileExtensionsSuite: - ends in gzip extension - is a vcf extension PhredUtilsSuite: - convert low phred score to log and back - convert high phred score to log and back - convert overflowing phred score to log and back and clip - convert negative zero log probability to phred and clip - round trip log probabilities ReadDatasetSuite: - create a new read genomic dataset - create a new read genomic dataset with sequence dictionary - save as parquet - round trip as parquet - save as fastq - save as single file fastq - filter read genomic dataset by reference region - broadcast region join reads and features - shuffle region join reads and features - convert reads to alignments - convert reads to sequences - convert reads to slices SmithWatermanSuite: - gather max position from simple scoring matrix - gather max position from irregular scoring matrix - gather max position from irregular scoring matrix with deletions - score simple alignment with constant gap - score irregular scoring matrix - score irregular scoring matrix with indel - can unroll cigars correctly - execute simple trackback - execute trackback with indel - run end to end smith waterman for simple reads - run end to end smith waterman for short sequences with indel - run end to end smith waterman for longer sequences with snp - run end to end smith waterman for longer sequences with short indel - run end to end smith waterman for shorter sequence in longer sequence - run end to end smith waterman for shorter sequence in longer sequence, with indel - smithWaterman - simple alignment MdTagSuite: - null md tag - zero length md tag - md tag with non-digit initial value - md tag invalid base - md tag, pure insertion - md tag, pure insertion, test 2 - md tag pure insertion equality - md tag equality and hashcode - valid md tags - get start of read with no mismatches or deletions - get start of read with no mismatches, but with a deletion at the start - get start of read with mismatches at the start - get end of read with no mismatches or deletions - check that mdtag and rich record return same end - get end of read with no mismatches, but a deletion at end - CIGAR with N operator - CIGAR with multiple N operators - CIGAR with P operators - Get correct matches for mdtag with insertion - Get correct matches for mdtag with mismatches and insertion - Get correct matches for mdtag with insertion between mismatches - Get correct matches for mdtag with intron between mismatches - Get correct matches for mdtag with intron and deletion between mismatches - Throw exception when number of deleted bases in mdtag disagrees with CIGAR - Get correct matches for mdtag with mismatch, insertion and deletion - Get correct matches for mdtag with mismatches, insertion and deletion - Get correct matches for MDTag with mismatches and deletions - Get correct matches base from MDTag and CIGAR with N - get end of read with mismatches and a deletion at end - get correct string out of mdtag with no mismatches - get correct string out of mdtag with mismatches at start - get correct string out of mdtag with deletion at end - get correct string out of mdtag with mismatches at end - get correct string out of complex mdtag - check complex mdtag - get gapped reference - move a cigar alignment by two for a read - rewrite alignment to all matches - rewrite alignment to two mismatches followed by all matches - rewrite alignment to include a deletion but otherwise all matches - rewrite alignment to include an insertion at the start of the read but otherwise all matches - create new md tag from read vs. reference, perfect match - create new md tag from read vs. reference, perfect alignment match, 1 mismatch - create new md tag from read vs. reference, alignment with deletion - create new md tag from read vs. reference, alignment with insert - handle '=' and 'X' operators - CIGAR/MD tag mismatch should cause errors GenomicDatasetSuite: - processing a command that is the spark root directory should return an absolute path - processing a command that is just a single word should do nothing - processing a command should handle arguments that include spaces - processing a command that is a single substitution should succeed - processing a command that is multiple words should split the string - process a command that is multiple words with a replacement - process a command that is multiple words with multiple replacements ParallelFileMergerSuite: - cannot write both empty gzip block and cram eof - buffer size must be non-negative - get the size of several files - block size must be positive and non-zero when trying to merge files - must provide files to merge - if two files are both below the block size, they should merge into one shard - merge two files where one is greater than the block size - merge a sharded sam file - merge a sharded bam file - merge a sharded cram file - can't turn a negative index into a path - generate a path from an index IndelTableSuite: - check for indels in a region with known indels - check for indels in a contig that doesn't exist - check for indels in a region without known indels - build indel table from rdd of variants SnpTableSuite: - create an empty snp table - create a snp table from variants on multiple contigs - create a snp table from a larger set of variants - perform lookups on multi-contig snp table - perform lookups on larger snp table RealignIndelsSuite: - map reads to targets - checking mapping to targets for artificial reads - checking alternative consensus for artificial reads - checking extraction of reference from reads - checking realigned reads for artificial input - checking realigned reads for artificial input with reference file - checking realigned reads for artificial input using knowns - checking realigned reads for artificial input using knowns and reads - skip realigning reads if target is highly covered - skip realignment if target is an insufficient LOD improvement - realign reads to an insertion - test mismatch quality scoring - test mismatch quality scoring for no mismatches - test mismatch quality scoring for offset - test mismatch quality scoring with early exit - test mismatch quality scoring after unpacking read - we shouldn't try to realign a region with no target - we shouldn't try to realign reads with no indel evidence - test OP and OC tags - realign a read with an insertion that goes off the end of the read - if realigning a target doesn't improve the LOD, don't drop reads - extract seq/qual from a read with no clipped bases - extract seq/qual from a read with clipped bases at start - extract seq/qual from a read with clipped bases at end - if unclip is selected, don't drop base when extracting from a read with clipped bases - get cigar and coordinates for read that spans indel, no clipped bases - get cigar and coordinates for read that spans deletion, clipped bases at start - get cigar and coordinates for read that falls wholly before insertion - get cigar and coordinates for read that falls wholly after insertion - get cigar and coordinates for read that falls wholly after deletion - get cigar and coordinates for read that partially spans insertion, no clipped bases - get cigar and coordinates for read that partially spans insertion, clipped bases at end - get cigar and coordinates for read that partially spans insertion, clipped bases both ends BaseQualityRecalibrationSuite: - BQSR Test Input #1 w/ VCF Sites without caching - BQSR Test Input #1 w/ VCF Sites with caching - BQSR Test Input #1 w/ VCF Sites with serialized caching DinucCovariateSuite: - computing dinucleotide pairs for a single base sequence should return (N,N) - compute dinucleotide pairs for a string of all valid bases - compute dinucleotide pairs for a string with an N - compute covariates for a read on the negative strand - compute covariates for a read on the positive strand SequenceDictionarySuite: - Convert from sam sequence record and back - Convert from SAM sequence dictionary file (with extra fields) - merge into existing dictionary - Convert from SAM sequence dictionary and back - Can retrieve sequence by name - SequenceDictionary's with same single element are equal - SequenceDictionary's with same two elements are equals - SequenceDictionary's with different elements are unequal - SequenceDictionaries with same elements in different order are compatible - isCompatible tests equality on overlap - The addition + works correctly - The append operation ++ works correctly - ContainsRefName works correctly for different string types - Apply on name works correctly for different String types - convert from sam sequence record and back - convert from sam sequence dictionary and back - conversion to sam sequence dictionary has correct sort order - load sequence dictionary from VCF file - empty sequence dictionary must be empty - test filter to reference name - test filter to reference names - test filter to reference name by function GenomicPositionPartitionerSuite: - partitions the UNMAPPED ReferencePosition into the top partition - if we do not have a contig for a record, we throw an IAE - partitioning into N pieces on M total sequence length, where N > M, results in M partitions - correctly partitions a single dummy sequence into two pieces - correctly counts cumulative lengths - correctly partitions positions across two dummy sequences - test that we can range partition ADAMRecords - test that we can range partition ADAMRecords indexed by sample - test that simple partitioning works okay on a reasonable set of ADAMRecords - test indexed ReferencePosition partitioning works on a set of indexed ADAMRecords CoverageSuite: - Convert to coverage from valid Feature - Convert to coverage from valid Feature with sampleId - Convert to coverage from Feature with null/empty contigName fails with correct error - Convert to coverage from Feature with no start/end position fails with correct error - Convert to coverage from Feature with no score fails with correct error InnerTreeRegionJoinSuite: - Ensure same reference regions get passed together - Overlapping reference regions - Multiple reference regions do not throw exception RichAlignmentRecordSuite: - Unclipped Start - Unclipped End - tags contains optional fields - read overlap unmapped read - read overlap reference position - read overlap same position different contig VariantDatasetSuite: - union two variant genomic datasets together - round trip to parquet - save and reload from partitioned parquet - use broadcast join to pull down variants mapped to targets - use right outer broadcast join to pull down variants mapped to targets - use shuffle join to pull down variants mapped to targets - use right outer shuffle join to pull down variants mapped to targets - use left outer shuffle join to pull down variants mapped to targets - use full outer shuffle join to pull down variants mapped to targets - use shuffle join with group by to pull down variants mapped to targets - use right outer shuffle join with group by to pull down variants mapped to targets - convert back to variant contexts - load parquet to sql, save, re-read from avro 2019-09-04 11:56:06 WARN DatasetBoundSliceDataset:190 - Saving directly as Parquet from SQL. Options other than compression codec are ignored. - transform variants to slice genomic dataset - transform variants to coverage genomic dataset - transform variants to feature genomic dataset - transform variants to fragment genomic dataset - transform variants to read genomic dataset - transform variants to genotype genomic dataset - transform variants to variant context genomic dataset - filter RDD bound variants to filters passed - filter dataset bound variants to filters passed - filter RDD bound variants by quality - filter dataset bound variants by quality - filter RDD bound variants by read depth - filter dataset bound variants by read depth - filter RDD bound variants by reference read depth - filter dataset bound variants by reference read depth - filter RDD bound single nucleotide variants - filter dataset bound single nucleotide variants - filter RDD bound multiple nucleotide variants - filter dataset bound multiple nucleotide variants - filter RDD bound indel variants - filter dataset bound indel variants - filter RDD bound variants to single nucleotide variants - filter dataset bound variants to single nucleotide variants - filter RDD bound variants to multiple nucleotide variants - filter dataset bound variants to multiple nucleotide variants - filter RDD bound variants to indel variants - filter dataset bound variants to indel variants - transform dataset via java API Run completed in 7 minutes, 32 seconds. Total number of tests run: 1175 Suites: completed 68, aborted 0 Tests: succeeded 1175, failed 0, canceled 0, ignored 5, pending 0 All tests passed. [INFO] [INFO] <<< scoverage-maven-plugin:1.1.1:report (default-cli) < [scoverage]test @ adam-core-spark2_2.11 <<< [INFO] [INFO] --- scoverage-maven-plugin:1.1.1:report (default-cli) @ adam-core-spark2_2.11 --- [INFO] [scoverage] Generating cobertura XML report... [INFO] [scoverage] Generating scoverage XML report... [INFO] [scoverage] Generating scoverage HTML report... [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building ADAM_2.11: APIs for Java, Python 0.29.0-SNAPSHOT [INFO] ------------------------------------------------------------------------ [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-apis-spark2_2.11 --- [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-apis-spark2_2.11 --- [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-apis-spark2_2.11 --- [INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/src/main/scala added. [INFO] [INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-apis-spark2_2.11 --- [INFO] Modified 0 of 5 .scala files [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-apis-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/src/main/resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-apis-spark2_2.11 --- [INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/src/main/scala:-1: info: compiling [INFO] Compiling 4 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/target/2.11.12/classes at 1567623393634 [WARNING] warning: there were two feature warnings; re-run with -feature for details [WARNING] one warning found [INFO] prepare-compile in 0 s [INFO] compile in 5 s [INFO] [INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-apis-spark2_2.11 --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-apis-spark2_2.11 --- [INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/src/test/scala added. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-apis-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 2 resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-apis-spark2_2.11 --- [INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/src/test/java:-1: info: compiling [INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/src/test/scala:-1: info: compiling [INFO] Compiling 9 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/target/2.11.12/test-classes at 1567623399449 [INFO] prepare-compile in 0 s [INFO] compile in 4 s [INFO] [INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-apis-spark2_2.11 --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 8 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/target/2.11.12/test-classes [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-apis-spark2_2.11 --- [INFO] Tests are skipped. [INFO] [INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-apis-spark2_2.11 --- Discovery starting. Discovery completed in 179 milliseconds. Run starting. Expected test count is: 10 JavaADAMContextSuite: 2019-09-04 11:56:45 WARN Utils:66 - Your hostname, research-jenkins-worker-09 resolves to a loopback address: 127.0.1.1; using 192.168.10.31 instead (on interface enp4s0f0) 2019-09-04 11:56:45 WARN Utils:66 - Set SPARK_LOCAL_IP if you need to bind to another address 2019-09-04 11:56:45 WARN NativeCodeLoader:62 - Unable to load native-hadoop library for your platform... using builtin-java classes where applicable - can read and write a small .SAM file - loadIndexedBam with multiple ReferenceRegions - can read and write a small .SAM file as fragments - can read and write a small .bed file as features - can read and write a small .bed file as coverage - can read and write a small .vcf as genotypes - can read and write a small .vcf as variants - can read a two bit file 2019-09-04 11:56:55 WARN RDDBoundSequenceDataset:190 - asSingleFile = true ignored when saving as Parquet. - can read and write .fa as sequences 2019-09-04 11:56:56 WARN RDDBoundSliceDataset:190 - asSingleFile = true ignored when saving as Parquet. - can read and write .fa as slices Run completed in 12 seconds, 75 milliseconds. Total number of tests run: 10 Suites: completed 2, aborted 0 Tests: succeeded 10, failed 0, canceled 0, ignored 0, pending 0 All tests passed. [INFO] [INFO] >>> scoverage-maven-plugin:1.1.1:report (default-cli) > [scoverage]test @ adam-apis-spark2_2.11 >>> [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-apis-spark2_2.11 --- [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-apis-spark2_2.11 --- [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-apis-spark2_2.11 --- [INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/src/main/scala added. [INFO] [INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-apis-spark2_2.11 --- [INFO] Modified 0 of 5 .scala files [INFO] [INFO] --- scoverage-maven-plugin:1.1.1:pre-compile (default-cli) @ adam-apis-spark2_2.11 --- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-apis-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/src/main/resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-apis-spark2_2.11 --- [INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/src/main/scala:-1: info: compiling [INFO] Compiling 4 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/target/2.11.12/scoverage-classes at 1567623417423 [INFO] [info] Cleaning datadir [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/target/scoverage-data] [INFO] [info] Beginning coverage instrumentation [INFO] [info] Instrumentation completed [265 statements] [INFO] [info] Wrote instrumentation file [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/target/scoverage-data/scoverage.coverage.xml] [INFO] [info] Will write measurement data to [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/target/scoverage-data] [WARNING] warning: there were two feature warnings; re-run with -feature for details [WARNING] one warning found [INFO] prepare-compile in 0 s [INFO] compile in 6 s [INFO] [INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-apis-spark2_2.11 --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- scoverage-maven-plugin:1.1.1:post-compile (default-cli) @ adam-apis-spark2_2.11 --- [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-apis-spark2_2.11 --- [INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/src/test/scala added. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-apis-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 2 resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-apis-spark2_2.11 --- [INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/src/test/java:-1: info: compiling [INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/src/test/scala:-1: info: compiling [INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/target/generated-test-sources/test-annotations:-1: info: compiling [INFO] Compiling 9 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/target/2.11.12/test-classes at 1567623423689 [INFO] prepare-compile in 0 s [INFO] compile in 4 s [INFO] [INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-apis-spark2_2.11 --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-apis-spark2_2.11 --- [INFO] Tests are skipped. [INFO] [INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-apis-spark2_2.11 --- Discovery starting. Discovery completed in 201 milliseconds. Run starting. Expected test count is: 10 JavaADAMContextSuite: 2019-09-04 11:57:08 WARN Utils:66 - Your hostname, research-jenkins-worker-09 resolves to a loopback address: 127.0.1.1; using 192.168.10.31 instead (on interface enp4s0f0) 2019-09-04 11:57:08 WARN Utils:66 - Set SPARK_LOCAL_IP if you need to bind to another address 2019-09-04 11:57:09 WARN NativeCodeLoader:62 - Unable to load native-hadoop library for your platform... using builtin-java classes where applicable - can read and write a small .SAM file - loadIndexedBam with multiple ReferenceRegions - can read and write a small .SAM file as fragments - can read and write a small .bed file as features - can read and write a small .bed file as coverage - can read and write a small .vcf as genotypes - can read and write a small .vcf as variants - can read a two bit file 2019-09-04 11:57:19 WARN RDDBoundSequenceDataset:190 - asSingleFile = true ignored when saving as Parquet. - can read and write .fa as sequences 2019-09-04 11:57:20 WARN RDDBoundSliceDataset:190 - asSingleFile = true ignored when saving as Parquet. - can read and write .fa as slices Run completed in 11 seconds, 999 milliseconds. Total number of tests run: 10 Suites: completed 2, aborted 0 Tests: succeeded 10, failed 0, canceled 0, ignored 0, pending 0 All tests passed. [INFO] [INFO] <<< scoverage-maven-plugin:1.1.1:report (default-cli) < [scoverage]test @ adam-apis-spark2_2.11 <<< [INFO] [INFO] --- scoverage-maven-plugin:1.1.1:report (default-cli) @ adam-apis-spark2_2.11 --- [INFO] [scoverage] Generating cobertura XML report... [INFO] [scoverage] Generating scoverage XML report... [INFO] [scoverage] Generating scoverage HTML report... [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building ADAM_2.11: CLI 0.29.0-SNAPSHOT [INFO] ------------------------------------------------------------------------ [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-cli-spark2_2.11 --- [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-cli-spark2_2.11 --- [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:timestamp-property (timestamp-property) @ adam-cli-spark2_2.11 --- [INFO] [INFO] --- git-commit-id-plugin:2.2.2:revision (default) @ adam-cli-spark2_2.11 --- [INFO] [INFO] --- templating-maven-plugin:1.0.0:filter-sources (filter-src) @ adam-cli-spark2_2.11 --- [INFO] Coping files with filtering to temporary directory. [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] Copied 1 files to output directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/generated-sources/java-templates [INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/generated-sources/java-templates added. [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-cli-spark2_2.11 --- [INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/src/main/scala added. [INFO] [INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-cli-spark2_2.11 --- [INFO] Modified 0 of 29 .scala files [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-cli-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/src/main/resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-cli-spark2_2.11 --- [INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/generated-sources/java-templates:-1: info: compiling [INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/src/main/scala:-1: info: compiling [INFO] Compiling 18 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/2.11.12/classes at 1567623442367 [WARNING] warning: there was one deprecation warning; re-run with -deprecation for details [WARNING] one warning found [INFO] prepare-compile in 0 s [INFO] compile in 7 s [INFO] [INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-cli-spark2_2.11 --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 1 source file to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/2.11.12/classes [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-cli-spark2_2.11 --- [INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/src/test/scala added. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-cli-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 15 resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-cli-spark2_2.11 --- [INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/src/test/scala:-1: info: compiling [INFO] Compiling 12 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/2.11.12/test-classes at 1567623450203 [INFO] prepare-compile in 0 s [INFO] compile in 7 s [INFO] [INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-cli-spark2_2.11 --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-cli-spark2_2.11 --- [INFO] Tests are skipped. [INFO] [INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-cli-spark2_2.11 --- Discovery starting. Discovery completed in 239 milliseconds. Run starting. Expected test count is: 44 TransformFeaturesSuite: 2019-09-04 11:57:38 WARN Utils:66 - Your hostname, research-jenkins-worker-09 resolves to a loopback address: 127.0.1.1; using 192.168.10.31 instead (on interface enp4s0f0) 2019-09-04 11:57:38 WARN Utils:66 - Set SPARK_LOCAL_IP if you need to bind to another address 2019-09-04 11:57:39 WARN NativeCodeLoader:62 - Unable to load native-hadoop library for your platform... using builtin-java classes where applicable - can convert a simple BED file TransformVariantsSuite: - save a file sorted by contig index - save a lexicographically sorted file ViewSuite: - -f 0 -F 0 is a no-op - no -f or -F args is a no-op - -f 4: only unmapped reads - -F 4: only mapped reads - -f 4 -F 8: unmapped reads with mapped mates - -f 12: unmapped reads with unmapped mates - -g 12: reads that are unmapped or whose mate is unmapped - -F 12: mapped reads with mapped mates - -g 36: unmapped reads or reads with mate on negative strand - -F 36: unmapped reads or reads with mate on negative strand TransformFragmentsSuite: - load queryname sorted sam and save as parquet - cannot sort if not saving as sam 2019-09-04 11:57:52 WARN TransformFragments:190 - If loading and saving as alignments, consider using TransformAlignments instead - load reads as sam and save them sorted - bin quality scores on reads TransformGenotypesSuite: - save a file sorted by contig index - save a lexicographically sorted file - transform VCF without nested annotations - transform VCF with nested annotations AboutSuite: - template variables have been replaced - templated values are not empty CoverageSuite: - correctly calculates coverage from small sam file MergeShardsSuite: - merge shards from unordered sam to unordered sam - unordered sam to ordered sam - merge sharded bam - merge sharded cram TransformAlignmentsSuite: - unordered sam to unordered sam - unordered sam to ordered sam - unordered sam, to adam, to sam - unordered sam, to adam, to ordered sam - put quality scores into bins - run region predicate ADAMMainSuite: - default command groups is non empty - module provides default command groups - inject default command groups when called via main - command groups is empty when called via apply - single command group - add new command group to default command groups - module restores default command groups when called via apply - custom module with single command group - custom module with new command group added to default command groups Adam2FastqSuite: 2019-09-04 11:58:04 WARN RDDBoundAlignmentRecordDataset:190 - Found 16 read names that don't occur exactly twice: 1x: 16 Samples: SRR062634.16445865 SRR062634.9119161 SRR062634.17190076 SRR062634.17969132 SRR062634.7301099 SRR062634.2087100 SRR062634.20911784 SRR062634.16769670 SRR062634.18958430 SRR062634.12099057 SRR062634.12606172 SRR062634.14985224 SRR062634.10448889 SRR062634.4789722 SRR062634.3203184 SRR062634.17698657 - convert SAM to paired FASTQ Run completed in 27 seconds, 524 milliseconds. Total number of tests run: 44 Suites: completed 12, aborted 0 Tests: succeeded 44, failed 0, canceled 0, ignored 0, pending 0 All tests passed. [INFO] [INFO] >>> scoverage-maven-plugin:1.1.1:report (default-cli) > [scoverage]test @ adam-cli-spark2_2.11 >>> [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-cli-spark2_2.11 --- [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-cli-spark2_2.11 --- [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:timestamp-property (timestamp-property) @ adam-cli-spark2_2.11 --- [INFO] [INFO] --- git-commit-id-plugin:2.2.2:revision (default) @ adam-cli-spark2_2.11 --- [INFO] [INFO] --- templating-maven-plugin:1.0.0:filter-sources (filter-src) @ adam-cli-spark2_2.11 --- [INFO] Coping files with filtering to temporary directory. [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] No files needs to be copied to output directory. Up to date: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/generated-sources/java-templates [INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/generated-sources/java-templates added. [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-cli-spark2_2.11 --- [INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/src/main/scala added. [INFO] [INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-cli-spark2_2.11 --- [INFO] Modified 0 of 29 .scala files [INFO] [INFO] --- scoverage-maven-plugin:1.1.1:pre-compile (default-cli) @ adam-cli-spark2_2.11 --- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-cli-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/src/main/resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-cli-spark2_2.11 --- [INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/generated-sources/java-templates:-1: info: compiling [INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/src/main/scala:-1: info: compiling [INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/generated-sources/annotations:-1: info: compiling [INFO] Compiling 18 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/2.11.12/scoverage-classes at 1567623486440 [INFO] [info] Cleaning datadir [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/scoverage-data] [INFO] [info] Beginning coverage instrumentation [INFO] [info] Instrumentation completed [1468 statements] [INFO] [info] Wrote instrumentation file [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/scoverage-data/scoverage.coverage.xml] [INFO] [info] Will write measurement data to [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/scoverage-data] [WARNING] warning: there was one deprecation warning; re-run with -deprecation for details [WARNING] one warning found [INFO] prepare-compile in 0 s [INFO] compile in 9 s [INFO] [INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-cli-spark2_2.11 --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 1 source file to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/2.11.12/scoverage-classes [INFO] [INFO] --- scoverage-maven-plugin:1.1.1:post-compile (default-cli) @ adam-cli-spark2_2.11 --- [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-cli-spark2_2.11 --- [INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/src/test/scala added. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-cli-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 15 resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-cli-spark2_2.11 --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-cli-spark2_2.11 --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-cli-spark2_2.11 --- [INFO] Tests are skipped. [INFO] [INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-cli-spark2_2.11 --- Discovery starting. Discovery completed in 219 milliseconds. Run starting. Expected test count is: 44 TransformFeaturesSuite: 2019-09-04 11:58:17 WARN Utils:66 - Your hostname, research-jenkins-worker-09 resolves to a loopback address: 127.0.1.1; using 192.168.10.31 instead (on interface enp4s0f0) 2019-09-04 11:58:17 WARN Utils:66 - Set SPARK_LOCAL_IP if you need to bind to another address 2019-09-04 11:58:18 WARN NativeCodeLoader:62 - Unable to load native-hadoop library for your platform... using builtin-java classes where applicable - can convert a simple BED file TransformVariantsSuite: - save a file sorted by contig index - save a lexicographically sorted file ViewSuite: - -f 0 -F 0 is a no-op - no -f or -F args is a no-op - -f 4: only unmapped reads - -F 4: only mapped reads - -f 4 -F 8: unmapped reads with mapped mates - -f 12: unmapped reads with unmapped mates - -g 12: reads that are unmapped or whose mate is unmapped - -F 12: mapped reads with mapped mates - -g 36: unmapped reads or reads with mate on negative strand - -F 36: unmapped reads or reads with mate on negative strand TransformFragmentsSuite: - load queryname sorted sam and save as parquet - cannot sort if not saving as sam 2019-09-04 11:58:32 WARN TransformFragments:190 - If loading and saving as alignments, consider using TransformAlignments instead - load reads as sam and save them sorted - bin quality scores on reads TransformGenotypesSuite: - save a file sorted by contig index - save a lexicographically sorted file - transform VCF without nested annotations - transform VCF with nested annotations AboutSuite: - template variables have been replaced - templated values are not empty CoverageSuite: - correctly calculates coverage from small sam file MergeShardsSuite: - merge shards from unordered sam to unordered sam - unordered sam to ordered sam - merge sharded bam - merge sharded cram TransformAlignmentsSuite: - unordered sam to unordered sam - unordered sam to ordered sam - unordered sam, to adam, to sam - unordered sam, to adam, to ordered sam - put quality scores into bins - run region predicate ADAMMainSuite: - default command groups is non empty - module provides default command groups - inject default command groups when called via main - command groups is empty when called via apply - single command group - add new command group to default command groups - module restores default command groups when called via apply - custom module with single command group - custom module with new command group added to default command groups Adam2FastqSuite: 2019-09-04 11:58:44 WARN RDDBoundAlignmentRecordDataset:190 - Found 16 read names that don't occur exactly twice: 1x: 16 Samples: SRR062634.16445865 SRR062634.9119161 SRR062634.17190076 SRR062634.17969132 SRR062634.7301099 SRR062634.2087100 SRR062634.20911784 SRR062634.16769670 SRR062634.18958430 SRR062634.12099057 SRR062634.12606172 SRR062634.14985224 SRR062634.10448889 SRR062634.4789722 SRR062634.3203184 SRR062634.17698657 - convert SAM to paired FASTQ Run completed in 28 seconds, 872 milliseconds. Total number of tests run: 44 Suites: completed 12, aborted 0 Tests: succeeded 44, failed 0, canceled 0, ignored 0, pending 0 All tests passed. [INFO] [INFO] <<< scoverage-maven-plugin:1.1.1:report (default-cli) < [scoverage]test @ adam-cli-spark2_2.11 <<< [INFO] [INFO] --- scoverage-maven-plugin:1.1.1:report (default-cli) @ adam-cli-spark2_2.11 --- [INFO] [scoverage] Generating cobertura XML report... [INFO] [scoverage] Generating scoverage XML report... [INFO] [scoverage] Generating scoverage HTML report... [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building ADAM_2.11: Assembly 0.29.0-SNAPSHOT [INFO] ------------------------------------------------------------------------ [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-assembly-spark2_2.11 --- [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-assembly-spark2_2.11 --- [INFO] [INFO] --- git-commit-id-plugin:2.2.2:revision (default) @ adam-assembly-spark2_2.11 --- [INFO] [INFO] --- templating-maven-plugin:1.0.0:filter-sources (filter-src) @ adam-assembly-spark2_2.11 --- [INFO] Request to add '/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/src/main/java-templates' folder. Not added since it does not exist. [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-assembly-spark2_2.11 --- [INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/src/main/scala added. [INFO] [INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-assembly-spark2_2.11 --- [INFO] Modified 0 of 1 .scala files [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-assembly-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/src/main/resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-assembly-spark2_2.11 --- [INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/src/main/scala:-1: info: compiling [INFO] Compiling 1 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/target/2.11.12/classes at 1567623527620 [INFO] prepare-compile in 0 s [INFO] compile in 1 s [INFO] [INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-assembly-spark2_2.11 --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-assembly-spark2_2.11 --- [INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/src/test/scala added. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-assembly-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/src/test/resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-assembly-spark2_2.11 --- [INFO] No sources to compile [INFO] [INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-assembly-spark2_2.11 --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-assembly-spark2_2.11 --- [INFO] Tests are skipped. [INFO] [INFO] >>> scoverage-maven-plugin:1.1.1:report (default-cli) > [scoverage]test @ adam-assembly-spark2_2.11 >>> [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-assembly-spark2_2.11 --- [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-assembly-spark2_2.11 --- [INFO] [INFO] --- git-commit-id-plugin:2.2.2:revision (default) @ adam-assembly-spark2_2.11 --- [INFO] [INFO] --- templating-maven-plugin:1.0.0:filter-sources (filter-src) @ adam-assembly-spark2_2.11 --- [INFO] Request to add '/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/src/main/java-templates' folder. Not added since it does not exist. [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-assembly-spark2_2.11 --- [INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/src/main/scala added. [INFO] [INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-assembly-spark2_2.11 --- [INFO] Modified 0 of 1 .scala files [INFO] [INFO] --- scoverage-maven-plugin:1.1.1:pre-compile (default-cli) @ adam-assembly-spark2_2.11 --- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-assembly-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/src/main/resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-assembly-spark2_2.11 --- [INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/src/main/scala:-1: info: compiling [INFO] Compiling 1 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/target/2.11.12/scoverage-classes at 1567623529758 [INFO] [info] Cleaning datadir [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/target/scoverage-data] [INFO] [info] Beginning coverage instrumentation [INFO] [info] Instrumentation completed [0 statements] [INFO] [info] Wrote instrumentation file [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/target/scoverage-data/scoverage.coverage.xml] [INFO] [info] Will write measurement data to [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/target/scoverage-data] [INFO] prepare-compile in 0 s [INFO] compile in 1 s [INFO] [INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-assembly-spark2_2.11 --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- scoverage-maven-plugin:1.1.1:post-compile (default-cli) @ adam-assembly-spark2_2.11 --- [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-assembly-spark2_2.11 --- [INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/src/test/scala added. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-assembly-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/src/test/resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-assembly-spark2_2.11 --- [INFO] No sources to compile [INFO] [INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-assembly-spark2_2.11 --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-assembly-spark2_2.11 --- [INFO] Tests are skipped. [INFO] [INFO] <<< scoverage-maven-plugin:1.1.1:report (default-cli) < [scoverage]test @ adam-assembly-spark2_2.11 <<< [INFO] [INFO] --- scoverage-maven-plugin:1.1.1:report (default-cli) @ adam-assembly-spark2_2.11 --- [INFO] [scoverage] Generating cobertura XML report... [INFO] [scoverage] Generating scoverage XML report... [INFO] [scoverage] Generating scoverage HTML report... [INFO] [scoverage] Generating aggregated cobertura XML report... [INFO] [scoverage] Generating aggregated scoverage XML report... [INFO] [scoverage] Generating aggregated scoverage HTML report... [INFO] ------------------------------------------------------------------------ [INFO] Reactor Summary: [INFO] [INFO] ADAM_2.11 .......................................... SUCCESS [ 13.358 s] [INFO] ADAM_2.11: Shader workaround ....................... SUCCESS [ 4.778 s] [INFO] ADAM_2.11: Avro-to-Dataset codegen utils ........... SUCCESS [ 10.348 s] [INFO] ADAM_2.11: Core .................................... SUCCESS [17:52 min] [INFO] ADAM_2.11: APIs for Java, Python ................... SUCCESS [ 47.833 s] [INFO] ADAM_2.11: CLI ..................................... SUCCESS [01:25 min] [INFO] ADAM_2.11: Assembly ................................ SUCCESS [ 9.719 s] [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ [INFO] Total time: 20:44 min [INFO] Finished at: 2019-09-04T11:58:56-07:00 [INFO] Final Memory: 89M/1484M [INFO] ------------------------------------------------------------------------ # if those pass, build the distribution package mvn -U \ -P distribution \ package \ -DskipTests \ -Dhadoop.version=${HADOOP_VERSION} \ -DargLine=${ADAM_MVN_TMP_DIR} + mvn -U -P distribution package -DskipTests -Dhadoop.version=2.7.5 -DargLine=/tmp/adamTestMvnb0spyFX OpenJDK 64-Bit Server VM warning: ignoring option MaxPermSize=1g; support was removed in 8.0 [INFO] Scanning for projects... [INFO] ------------------------------------------------------------------------ [INFO] Reactor Build Order: [INFO] [INFO] ADAM_2.11 [INFO] ADAM_2.11: Shader workaround [INFO] ADAM_2.11: Avro-to-Dataset codegen utils [INFO] ADAM_2.11: Core [INFO] ADAM_2.11: APIs for Java, Python [INFO] ADAM_2.11: CLI [INFO] ADAM_2.11: Assembly [INFO] ADAM_2.11: Distribution [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building ADAM_2.11 0.29.0-SNAPSHOT [INFO] ------------------------------------------------------------------------ [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-parent-spark2_2.11 --- [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-parent-spark2_2.11 --- [INFO] [INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-parent-spark2_2.11 --- [INFO] Modified 0 of 242 .scala files [INFO] [INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-parent-spark2_2.11 --- [INFO] No sources to compile [INFO] [INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-parent-spark2_2.11 --- [INFO] No sources to compile [INFO] [INFO] --- maven-source-plugin:3.0.1:jar-no-fork (attach-sources) @ adam-parent-spark2_2.11 --- [INFO] [INFO] --- maven-javadoc-plugin:3.1.0:jar (attach-javadoc) @ adam-parent-spark2_2.11 --- [INFO] [INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ adam-parent-spark2_2.11 >>> [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-parent-spark2_2.11 --- [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-parent-spark2_2.11 --- [INFO] [INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ adam-parent-spark2_2.11 <<< [INFO] [INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ adam-parent-spark2_2.11 --- [INFO] No source files found [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building ADAM_2.11: Shader workaround 0.29.0-SNAPSHOT [INFO] ------------------------------------------------------------------------ [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-shade-spark2_2.11 --- [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-shade-spark2_2.11 --- [INFO] [INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-shade-spark2_2.11 --- [INFO] Modified 0 of 0 .scala files [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-shade-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/src/main/resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-shade-spark2_2.11 --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-shade-spark2_2.11 --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- plexus-component-metadata:1.5.5:generate-metadata (default) @ adam-shade-spark2_2.11 --- [INFO] Discovered 1 component descriptors(s) [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-shade-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/src/test/resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-shade-spark2_2.11 --- [INFO] No sources to compile [INFO] [INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-shade-spark2_2.11 --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-shade-spark2_2.11 --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.1.2:jar (default-jar) @ adam-shade-spark2_2.11 --- [INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/target/adam-shade-spark2_2.11-0.29.0-SNAPSHOT.jar [INFO] [INFO] --- maven-source-plugin:3.0.1:jar-no-fork (attach-sources) @ adam-shade-spark2_2.11 --- [INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/target/adam-shade-spark2_2.11-0.29.0-SNAPSHOT-sources.jar [INFO] [INFO] --- maven-javadoc-plugin:3.1.0:jar (attach-javadoc) @ adam-shade-spark2_2.11 --- [INFO] Loading source files for package org.bdgenomics.adam.shade... Constructing Javadoc information... Standard Doclet version 1.8.0_222 Building tree for all the packages and classes... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/target/apidocs/org/bdgenomics/adam/shade/ParquetAvroWorkaroundShader.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/target/apidocs/org/bdgenomics/adam/shade/package-frame.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/target/apidocs/org/bdgenomics/adam/shade/package-summary.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/target/apidocs/org/bdgenomics/adam/shade/package-tree.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/target/apidocs/constant-values.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/target/apidocs/org/bdgenomics/adam/shade/class-use/ParquetAvroWorkaroundShader.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/target/apidocs/org/bdgenomics/adam/shade/package-use.html... Building index for all the packages and classes... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/target/apidocs/overview-tree.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/target/apidocs/index-all.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/target/apidocs/deprecated-list.html... Building index for all classes... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/target/apidocs/allclasses-frame.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/target/apidocs/allclasses-noframe.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/target/apidocs/index.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/target/apidocs/help-doc.html... [INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/target/adam-shade-spark2_2.11-0.29.0-SNAPSHOT-javadoc.jar [INFO] [INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ adam-shade-spark2_2.11 >>> [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-shade-spark2_2.11 --- [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-shade-spark2_2.11 --- [INFO] [INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ adam-shade-spark2_2.11 <<< [INFO] [INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ adam-shade-spark2_2.11 --- model contains 6 documentable templates [INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/target/adam-shade-spark2_2.11-0.29.0-SNAPSHOT-javadoc.jar [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building ADAM_2.11: Avro-to-Dataset codegen utils 0.29.0-SNAPSHOT [INFO] ------------------------------------------------------------------------ [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-codegen-spark2_2.11 --- [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-codegen-spark2_2.11 --- [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-codegen-spark2_2.11 --- [INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/src/main/scala added. [INFO] [INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-codegen-spark2_2.11 --- [INFO] Modified 0 of 4 .scala files [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-codegen-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/src/main/resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-codegen-spark2_2.11 --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-codegen-spark2_2.11 --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-codegen-spark2_2.11 --- [INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/src/test/scala added. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-codegen-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/src/test/resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-codegen-spark2_2.11 --- [INFO] No sources to compile [INFO] [INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-codegen-spark2_2.11 --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-codegen-spark2_2.11 --- [INFO] Tests are skipped. [INFO] [INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-codegen-spark2_2.11 --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.1.2:jar (default-jar) @ adam-codegen-spark2_2.11 --- [INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/target/adam-codegen-spark2_2.11-0.29.0-SNAPSHOT.jar [INFO] [INFO] --- maven-source-plugin:3.0.1:jar-no-fork (attach-sources) @ adam-codegen-spark2_2.11 --- [INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/target/adam-codegen-spark2_2.11-0.29.0-SNAPSHOT-sources.jar [INFO] [INFO] --- maven-javadoc-plugin:3.1.0:jar (attach-javadoc) @ adam-codegen-spark2_2.11 --- [INFO] [INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ adam-codegen-spark2_2.11 >>> [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-codegen-spark2_2.11 --- [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-codegen-spark2_2.11 --- [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-codegen-spark2_2.11 --- [INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/src/main/scala added. [INFO] [INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ adam-codegen-spark2_2.11 <<< [INFO] [INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ adam-codegen-spark2_2.11 --- model contains 11 documentable templates [INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/target/adam-codegen-spark2_2.11-0.29.0-SNAPSHOT-javadoc.jar [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building ADAM_2.11: Core 0.29.0-SNAPSHOT [INFO] ------------------------------------------------------------------------ Downloading: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/bdg-formats/bdg-formats/0.14.0-SNAPSHOT/maven-metadata.xml 790/790 B Downloaded: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/bdg-formats/bdg-formats/0.14.0-SNAPSHOT/maven-metadata.xml (790 B at 0.2 KB/sec) [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-core-spark2_2.11 --- [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-core-spark2_2.11 --- [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-core-spark2_2.11 --- [INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala added. [INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/generated-sources/src/main/scala added. [INFO] [INFO] --- exec-maven-plugin:1.5.0:java (generate-scala-products) @ adam-core-spark2_2.11 --- SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder". SLF4J: Defaulting to no-operation (NOP) logger implementation SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details. [INFO] [INFO] --- exec-maven-plugin:1.5.0:java (generate-scala-projection-fields) @ adam-core-spark2_2.11 --- SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder". SLF4J: Defaulting to no-operation (NOP) logger implementation SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details. [INFO] [INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-core-spark2_2.11 --- [INFO] Modified 2 of 202 .scala files [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-core-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-core-spark2_2.11 --- [INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/java:-1: info: compiling [INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala:-1: info: compiling [INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/generated-sources/src/main/scala:-1: info: compiling [INFO] Compiling 138 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/2.11.12/classes at 1567623566811 [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicDataset.scala:3099: warning: no valid targets for annotation on value uTag - it is discarded unused. You may specify targets with meta-annotations, e.g. @(transient @getter) [WARNING] @transient val uTag: TypeTag[U] [WARNING] ^ [WARNING] warning: there were 89 deprecation warnings; re-run with -deprecation for details [WARNING] warning: there were 5 feature warnings; re-run with -feature for details [WARNING] three warnings found [INFO] prepare-compile in 0 s [INFO] compile in 33 s [INFO] [INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-core-spark2_2.11 --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-core-spark2_2.11 --- [INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala added. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-core-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 152 resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-core-spark2_2.11 --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-core-spark2_2.11 --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-core-spark2_2.11 --- [INFO] Tests are skipped. [INFO] [INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-core-spark2_2.11 --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.1.2:jar (default-jar) @ adam-core-spark2_2.11 --- [INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/adam-core-spark2_2.11-0.29.0-SNAPSHOT.jar [INFO] [INFO] --- maven-source-plugin:3.0.1:jar-no-fork (attach-sources) @ adam-core-spark2_2.11 --- [INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/adam-core-spark2_2.11-0.29.0-SNAPSHOT-sources.jar [INFO] [INFO] --- maven-javadoc-plugin:3.1.0:jar (attach-javadoc) @ adam-core-spark2_2.11 --- [INFO] The goal 'org.apache.maven.plugins:maven-javadoc-plugin:3.1.0:javadoc' has not been previously called for the module: 'org.bdgenomics.adam:adam-codegen-spark2_2.11:jar:0.29.0-SNAPSHOT'. Trying to invoke it... OpenJDK 64-Bit Server VM warning: ignoring option MaxPermSize=1g; support was removed in 8.0 [WARNING] Creating fake javadoc directory to prevent repeated invocations: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/target/apidocs [ERROR] Error fetching link: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/target/apidocs. Ignored it. [INFO] Loading source files for package org.apache.parquet.avro... Loading source files for package org.bdgenomics.adam.io... Constructing Javadoc information... Standard Doclet version 1.8.0_222 Building tree for all the packages and classes... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/org/apache/parquet/avro/AvroSchemaConverter.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/FastqInputFormat.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/FastqRecordReader.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/InterleavedFastqInputFormat.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/SingleFastqInputFormat.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/overview-frame.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/org/apache/parquet/avro/package-frame.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/org/apache/parquet/avro/package-summary.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/org/apache/parquet/avro/package-tree.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/package-frame.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/package-summary.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/package-tree.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/constant-values.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/org/apache/parquet/avro/class-use/AvroSchemaConverter.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/class-use/SingleFastqInputFormat.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/class-use/FastqInputFormat.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/class-use/InterleavedFastqInputFormat.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/class-use/FastqRecordReader.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/org/apache/parquet/avro/package-use.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/package-use.html... Building index for all the packages and classes... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/overview-tree.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/index-all.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/deprecated-list.html... Building index for all classes... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/allclasses-frame.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/allclasses-noframe.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/index.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/overview-summary.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/help-doc.html... [INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/adam-core-spark2_2.11-0.29.0-SNAPSHOT-javadoc.jar [INFO] [INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ adam-core-spark2_2.11 >>> [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-core-spark2_2.11 --- [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-core-spark2_2.11 --- [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-core-spark2_2.11 --- [INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala added. [INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/generated-sources/src/main/scala added. [INFO] [INFO] --- exec-maven-plugin:1.5.0:java (generate-scala-products) @ adam-core-spark2_2.11 --- SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder". SLF4J: Defaulting to no-operation (NOP) logger implementation SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details. [INFO] [INFO] --- exec-maven-plugin:1.5.0:java (generate-scala-projection-fields) @ adam-core-spark2_2.11 --- SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder". SLF4J: Defaulting to no-operation (NOP) logger implementation SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details. [INFO] [INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ adam-core-spark2_2.11 <<< [INFO] [INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ adam-core-spark2_2.11 --- /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverters.scala:274: warning: discarding unmoored doc comment /** ^ /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordDataset.scala:844: warning: Octal escape literals are deprecated, use \u0001 instead. binaryCodec.writeBytes("BAM\001".getBytes()) ^ /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rich/RichCigar.scala:43: warning: discarding unmoored doc comment /** ^ /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicDataset.scala:3099: warning: no valid targets for annotation on value uTag - it is discarded unused. You may specify targets with meta-annotations, e.g. @(transient @getter) @transient val uTag: TypeTag[U] ^ warning: there were 5 feature warnings; re-run with -feature for details model contains 289 documentable templates /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/util/AttributeUtils.scala:70: warning: Could not find any member to link for "IllegalArgumentException". /** ^ /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/projections/Projection.scala:45: warning: Could not find any member to link for "IllegalArgumentException". /** ^ /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala:1815: warning: Could not find any member to link for "FileNotFoundException". /** ^ /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala:1844: warning: Could not find any member to link for "FileNotFoundException". /** ^ /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala:1864: warning: Could not find any member to link for "FileNotFoundException". /** ^ /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicPartitioners.scala:75: warning: Could not find any member to link for "IllegalArgumentException". /** ^ /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicPartitioners.scala:178: warning: Could not find any member to link for "IllegalArgumentException". /** ^ /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala:474: warning: Could not find any member to link for "IllegalArgumentException". /** ^ /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala:3491: warning: Could not find any member to link for "IllegalArgumentException". /** ^ /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala:429: warning: Could not find any member to link for "IllegalArgumentException". /** ^ /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicDataset.scala:755: warning: Variable x undefined in comment for method pipe in trait GenomicDataset * Files are substituted in to the command with a $x syntax. E.g., to invoke ^ /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicDataset.scala:756: warning: Variable 0 undefined in comment for method pipe in trait GenomicDataset * a command that uses the first file from the files Seq, use $0. To access ^ /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicDataset.scala:757: warning: Variable root undefined in comment for method pipe in trait GenomicDataset * the path to the directory where the files are copied, use $root. ^ /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/models/ReadGroupDictionary.scala:47: warning: Could not find any member to link for "IllegalArgumentException". /** ^ /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/models/Alphabet.scala:44: warning: Could not find any member to link for "IllegalArgumentException". /** ^ /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala:258: warning: Could not find any member to link for "IllegalArgumentException". /** ^ /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala:242: warning: Could not find any member to link for "IllegalArgumentException". /** ^ /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala:444: warning: Could not find any member to link for "IllegalArgumentException". /** ^ /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala:354: warning: Could not find any member to link for "IllegalArgumentException". /** ^ 24 warnings found [INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/adam-core-spark2_2.11-0.29.0-SNAPSHOT-javadoc.jar [INFO] [INFO] --- maven-jar-plugin:3.1.2:test-jar (default) @ adam-core-spark2_2.11 --- [INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/adam-core-spark2_2.11-0.29.0-SNAPSHOT-tests.jar [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building ADAM_2.11: APIs for Java, Python 0.29.0-SNAPSHOT [INFO] ------------------------------------------------------------------------ [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-apis-spark2_2.11 --- [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-apis-spark2_2.11 --- [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-apis-spark2_2.11 --- [INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/src/main/scala added. [INFO] [INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-apis-spark2_2.11 --- [INFO] Modified 0 of 5 .scala files [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-apis-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/src/main/resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-apis-spark2_2.11 --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-apis-spark2_2.11 --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-apis-spark2_2.11 --- [INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/src/test/scala added. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-apis-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 2 resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-apis-spark2_2.11 --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-apis-spark2_2.11 --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-apis-spark2_2.11 --- [INFO] Tests are skipped. [INFO] [INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-apis-spark2_2.11 --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.1.2:jar (default-jar) @ adam-apis-spark2_2.11 --- [INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/target/adam-apis-spark2_2.11-0.29.0-SNAPSHOT.jar [INFO] [INFO] --- maven-source-plugin:3.0.1:jar-no-fork (attach-sources) @ adam-apis-spark2_2.11 --- [INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/target/adam-apis-spark2_2.11-0.29.0-SNAPSHOT-sources.jar [INFO] [INFO] --- maven-javadoc-plugin:3.1.0:jar (attach-javadoc) @ adam-apis-spark2_2.11 --- [INFO] [INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ adam-apis-spark2_2.11 >>> [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-apis-spark2_2.11 --- [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-apis-spark2_2.11 --- [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-apis-spark2_2.11 --- [INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/src/main/scala added. [INFO] [INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ adam-apis-spark2_2.11 <<< [INFO] [INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ adam-apis-spark2_2.11 --- warning: there were two feature warnings; re-run with -feature for details model contains 192 documentable templates one warning found [INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/target/adam-apis-spark2_2.11-0.29.0-SNAPSHOT-javadoc.jar [INFO] [INFO] --- maven-jar-plugin:3.1.2:test-jar (default) @ adam-apis-spark2_2.11 --- [INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/target/adam-apis-spark2_2.11-0.29.0-SNAPSHOT-tests.jar [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building ADAM_2.11: CLI 0.29.0-SNAPSHOT [INFO] ------------------------------------------------------------------------ [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-cli-spark2_2.11 --- [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-cli-spark2_2.11 --- [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:timestamp-property (timestamp-property) @ adam-cli-spark2_2.11 --- [INFO] [INFO] --- git-commit-id-plugin:2.2.2:revision (default) @ adam-cli-spark2_2.11 --- [INFO] [INFO] --- templating-maven-plugin:1.0.0:filter-sources (filter-src) @ adam-cli-spark2_2.11 --- [INFO] Coping files with filtering to temporary directory. [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] No files needs to be copied to output directory. Up to date: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/generated-sources/java-templates [INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/generated-sources/java-templates added. [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-cli-spark2_2.11 --- [INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/src/main/scala added. [INFO] [INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-cli-spark2_2.11 --- [INFO] Modified 0 of 29 .scala files [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-cli-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/src/main/resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-cli-spark2_2.11 --- [INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/generated-sources/java-templates:-1: info: compiling [INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/src/main/scala:-1: info: compiling [INFO] Compiling 18 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/2.11.12/classes at 1567623654338 [WARNING] warning: there was one deprecation warning; re-run with -deprecation for details [WARNING] one warning found [INFO] prepare-compile in 0 s [INFO] compile in 8 s [INFO] [INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-cli-spark2_2.11 --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-cli-spark2_2.11 --- [INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/src/test/scala added. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-cli-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 15 resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-cli-spark2_2.11 --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-cli-spark2_2.11 --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-cli-spark2_2.11 --- [INFO] Tests are skipped. [INFO] [INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-cli-spark2_2.11 --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.1.2:jar (default-jar) @ adam-cli-spark2_2.11 --- [INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/adam-cli-spark2_2.11-0.29.0-SNAPSHOT.jar [INFO] [INFO] --- maven-source-plugin:3.0.1:jar-no-fork (attach-sources) @ adam-cli-spark2_2.11 --- [INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/adam-cli-spark2_2.11-0.29.0-SNAPSHOT-sources.jar [INFO] [INFO] --- maven-javadoc-plugin:3.1.0:jar (attach-javadoc) @ adam-cli-spark2_2.11 --- [INFO] The goal 'org.apache.maven.plugins:maven-javadoc-plugin:3.1.0:javadoc' has not been previously called for the module: 'org.bdgenomics.adam:adam-apis-spark2_2.11:jar:0.29.0-SNAPSHOT'. Trying to invoke it... OpenJDK 64-Bit Server VM warning: ignoring option MaxPermSize=1g; support was removed in 8.0 [WARNING] Creating fake javadoc directory to prevent repeated invocations: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/target/apidocs [ERROR] Error fetching link: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/target/apidocs. Ignored it. [INFO] Loading source files for package org.bdgenomics.adam.cli... Constructing Javadoc information... Standard Doclet version 1.8.0_222 Building tree for all the packages and classes... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/apidocs/org/bdgenomics/adam/cli/About.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/apidocs/org/bdgenomics/adam/cli/package-frame.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/apidocs/org/bdgenomics/adam/cli/package-summary.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/apidocs/org/bdgenomics/adam/cli/package-tree.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/apidocs/constant-values.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/apidocs/org/bdgenomics/adam/cli/class-use/About.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/apidocs/org/bdgenomics/adam/cli/package-use.html... Building index for all the packages and classes... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/apidocs/overview-tree.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/apidocs/index-all.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/apidocs/deprecated-list.html... Building index for all classes... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/apidocs/allclasses-frame.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/apidocs/allclasses-noframe.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/apidocs/index.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/apidocs/help-doc.html... [INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/adam-cli-spark2_2.11-0.29.0-SNAPSHOT-javadoc.jar [INFO] [INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ adam-cli-spark2_2.11 >>> [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-cli-spark2_2.11 --- [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-cli-spark2_2.11 --- [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:timestamp-property (timestamp-property) @ adam-cli-spark2_2.11 --- [INFO] [INFO] --- git-commit-id-plugin:2.2.2:revision (default) @ adam-cli-spark2_2.11 --- [INFO] [INFO] --- templating-maven-plugin:1.0.0:filter-sources (filter-src) @ adam-cli-spark2_2.11 --- [INFO] Coping files with filtering to temporary directory. [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] No files needs to be copied to output directory. Up to date: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/generated-sources/java-templates [INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/generated-sources/java-templates added. [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-cli-spark2_2.11 --- [INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/src/main/scala added. [INFO] [INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ adam-cli-spark2_2.11 <<< [INFO] [INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ adam-cli-spark2_2.11 --- model contains 55 documentable templates [INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/adam-cli-spark2_2.11-0.29.0-SNAPSHOT-javadoc.jar [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building ADAM_2.11: Assembly 0.29.0-SNAPSHOT [INFO] ------------------------------------------------------------------------ [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-assembly-spark2_2.11 --- [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-assembly-spark2_2.11 --- [INFO] [INFO] --- git-commit-id-plugin:2.2.2:revision (default) @ adam-assembly-spark2_2.11 --- [INFO] [INFO] --- templating-maven-plugin:1.0.0:filter-sources (filter-src) @ adam-assembly-spark2_2.11 --- [INFO] Request to add '/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/src/main/java-templates' folder. Not added since it does not exist. [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-assembly-spark2_2.11 --- [INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/src/main/scala added. [INFO] [INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-assembly-spark2_2.11 --- [INFO] Modified 0 of 1 .scala files [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-assembly-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/src/main/resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-assembly-spark2_2.11 --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-assembly-spark2_2.11 --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-assembly-spark2_2.11 --- [INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/src/test/scala added. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-assembly-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/src/test/resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-assembly-spark2_2.11 --- [INFO] No sources to compile [INFO] [INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-assembly-spark2_2.11 --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-assembly-spark2_2.11 --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.1.2:jar (default-jar) @ adam-assembly-spark2_2.11 --- [INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/target/adam-assembly-spark2_2.11-0.29.0-SNAPSHOT.jar [INFO] [INFO] --- maven-source-plugin:3.0.1:jar-no-fork (attach-sources) @ adam-assembly-spark2_2.11 --- [INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/target/adam-assembly-spark2_2.11-0.29.0-SNAPSHOT-sources.jar [INFO] [INFO] --- maven-javadoc-plugin:3.1.0:jar (attach-javadoc) @ adam-assembly-spark2_2.11 --- [INFO] [INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ adam-assembly-spark2_2.11 >>> [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-assembly-spark2_2.11 --- [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-assembly-spark2_2.11 --- [INFO] [INFO] --- git-commit-id-plugin:2.2.2:revision (default) @ adam-assembly-spark2_2.11 --- [INFO] [INFO] --- templating-maven-plugin:1.0.0:filter-sources (filter-src) @ adam-assembly-spark2_2.11 --- [INFO] Request to add '/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/src/main/java-templates' folder. Not added since it does not exist. [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-assembly-spark2_2.11 --- [INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/src/main/scala added. [INFO] [INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ adam-assembly-spark2_2.11 <<< [INFO] [INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ adam-assembly-spark2_2.11 --- model contains 6 documentable templates [INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/target/adam-assembly-spark2_2.11-0.29.0-SNAPSHOT-javadoc.jar [INFO] [INFO] --- maven-shade-plugin:3.2.0:shade (default) @ adam-assembly-spark2_2.11 --- [INFO] Including org.bdgenomics.adam:adam-cli-spark2_2.11:jar:0.29.0-SNAPSHOT in the shaded jar. [INFO] Including org.bdgenomics.utils:utils-misc-spark2_2.11:jar:0.2.15 in the shaded jar. [INFO] Including org.bdgenomics.utils:utils-io-spark2_2.11:jar:0.2.15 in the shaded jar. [INFO] Including org.apache.httpcomponents:httpclient:jar:4.5.7 in the shaded jar. [INFO] Including org.apache.httpcomponents:httpcore:jar:4.4.11 in the shaded jar. [INFO] Including commons-logging:commons-logging:jar:1.2 in the shaded jar. [INFO] Including commons-codec:commons-codec:jar:1.11 in the shaded jar. [INFO] Including org.bdgenomics.utils:utils-cli-spark2_2.11:jar:0.2.15 in the shaded jar. [INFO] Including org.clapper:grizzled-slf4j_2.11:jar:1.3.3 in the shaded jar. [INFO] Including org.apache.parquet:parquet-avro:jar:1.10.1 in the shaded jar. [INFO] Including org.apache.parquet:parquet-column:jar:1.10.1 in the shaded jar. [INFO] Including org.apache.parquet:parquet-common:jar:1.10.1 in the shaded jar. [INFO] Including org.apache.parquet:parquet-encoding:jar:1.10.1 in the shaded jar. [INFO] Including org.apache.parquet:parquet-hadoop:jar:1.10.1 in the shaded jar. [INFO] Including org.apache.parquet:parquet-jackson:jar:1.10.1 in the shaded jar. [INFO] Including commons-pool:commons-pool:jar:1.6 in the shaded jar. [INFO] Including org.apache.parquet:parquet-format:jar:2.4.0 in the shaded jar. [INFO] Including org.bdgenomics.utils:utils-metrics-spark2_2.11:jar:0.2.15 in the shaded jar. [INFO] Including com.netflix.servo:servo-core:jar:0.12.25 in the shaded jar. [INFO] Including com.netflix.spectator:spectator-api:jar:0.67.0 in the shaded jar. [INFO] Including org.slf4j:slf4j-api:jar:1.7.25 in the shaded jar. [INFO] Including org.bdgenomics.bdg-formats:bdg-formats:jar:0.14.0-SNAPSHOT in the shaded jar. [INFO] Including org.apache.avro:avro:jar:1.8.2 in the shaded jar. [INFO] Including org.codehaus.jackson:jackson-core-asl:jar:1.9.13 in the shaded jar. [INFO] Including org.codehaus.jackson:jackson-mapper-asl:jar:1.9.13 in the shaded jar. [INFO] Including com.thoughtworks.paranamer:paranamer:jar:2.8 in the shaded jar. [INFO] Including org.xerial.snappy:snappy-java:jar:1.1.1.3 in the shaded jar. [INFO] Including org.apache.commons:commons-compress:jar:1.8.1 in the shaded jar. [INFO] Including org.tukaani:xz:jar:1.5 in the shaded jar. [INFO] Including org.bdgenomics.adam:adam-core-spark2_2.11:jar:0.29.0-SNAPSHOT in the shaded jar. [INFO] Including org.bdgenomics.utils:utils-intervalrdd-spark2_2.11:jar:0.2.15 in the shaded jar. [INFO] Including com.esotericsoftware.kryo:kryo:jar:2.24.0 in the shaded jar. [INFO] Including com.esotericsoftware.minlog:minlog:jar:1.2 in the shaded jar. [INFO] Including org.objenesis:objenesis:jar:2.1 in the shaded jar. [INFO] Including commons-io:commons-io:jar:2.6 in the shaded jar. [INFO] Including it.unimi.dsi:fastutil:jar:6.6.5 in the shaded jar. [INFO] Including org.seqdoop:hadoop-bam:jar:7.9.2 in the shaded jar. [INFO] Including com.github.jsr203hadoop:jsr203hadoop:jar:1.0.3 in the shaded jar. [INFO] Including com.github.samtools:htsjdk:jar:2.19.0 in the shaded jar. [INFO] Including org.apache.commons:commons-jexl:jar:2.1.1 in the shaded jar. [INFO] Including gov.nih.nlm.ncbi:ngs-java:jar:2.9.0 in the shaded jar. [INFO] Including com.google.guava:guava:jar:27.0-jre in the shaded jar. [INFO] Including com.google.guava:failureaccess:jar:1.0 in the shaded jar. [INFO] Including com.google.guava:listenablefuture:jar:9999.0-empty-to-avoid-conflict-with-guava in the shaded jar. [INFO] Including org.checkerframework:checker-qual:jar:2.5.2 in the shaded jar. [INFO] Including com.google.errorprone:error_prone_annotations:jar:2.2.0 in the shaded jar. [INFO] Including com.google.j2objc:j2objc-annotations:jar:1.1 in the shaded jar. [INFO] Including org.codehaus.mojo:animal-sniffer-annotations:jar:1.17 in the shaded jar. [INFO] Including org.bdgenomics.adam:adam-codegen-spark2_2.11:jar:0.29.0-SNAPSHOT in the shaded jar. [INFO] Including org.bdgenomics.adam:adam-apis-spark2_2.11:jar:0.29.0-SNAPSHOT in the shaded jar. [INFO] Including args4j:args4j:jar:2.33 in the shaded jar. [INFO] Including net.codingwell:scala-guice_2.11:jar:4.2.1 in the shaded jar. [INFO] Including com.google.inject:guice:jar:4.2.0 in the shaded jar. [INFO] Including javax.inject:javax.inject:jar:1 in the shaded jar. [INFO] Including aopalliance:aopalliance:jar:1.0 in the shaded jar. [INFO] Including org.scala-lang:scala-reflect:jar:2.11.12 in the shaded jar. [INFO] Including com.google.code.findbugs:jsr305:jar:1.3.9 in the shaded jar. [WARNING] WORKAROUND: refusing to add class org/apache/parquet/avro/AvroSchemaConverter$2.class from jar /home/jenkins/.m2/repository/org/apache/parquet/parquet-avro/1.10.1/parquet-avro-1.10.1.jar [WARNING] WORKAROUND: refusing to add class org/apache/parquet/avro/AvroSchemaConverter.class from jar /home/jenkins/.m2/repository/org/apache/parquet/parquet-avro/1.10.1/parquet-avro-1.10.1.jar [WARNING] WORKAROUND: refusing to add class org/apache/parquet/avro/AvroSchemaConverter$1.class from jar /home/jenkins/.m2/repository/org/apache/parquet/parquet-avro/1.10.1/parquet-avro-1.10.1.jar [WARNING] guava-27.0-jre.jar, failureaccess-1.0.jar define 2 overlapping classes: [WARNING] - com.google.common.util.concurrent.internal.InternalFutureFailureAccess [WARNING] - com.google.common.util.concurrent.internal.InternalFutures [WARNING] maven-shade-plugin has detected that some class files are [WARNING] present in two or more JARs. When this happens, only one [WARNING] single version of the class is copied to the uber jar. [WARNING] Usually this is not harmful and you can skip these warnings, [WARNING] otherwise try to manually exclude artifacts based on [WARNING] mvn dependency:tree -Ddetail=true and the above output. [WARNING] See http://maven.apache.org/plugins/maven-shade-plugin/ [INFO] Replacing original artifact with shaded artifact. [INFO] Replacing /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/target/adam-assembly-spark2_2.11-0.29.0-SNAPSHOT.jar with /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/target/adam-assembly-spark2_2.11-0.29.0-SNAPSHOT-shaded.jar [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building ADAM_2.11: Distribution 0.29.0-SNAPSHOT [INFO] ------------------------------------------------------------------------ [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-distribution-spark2_2.11 --- [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-distribution-spark2_2.11 --- [INFO] [INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-distribution-spark2_2.11 --- [INFO] Modified 0 of 0 .scala files [INFO] [INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-distribution-spark2_2.11 --- [INFO] No sources to compile [INFO] [INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-distribution-spark2_2.11 --- [INFO] No sources to compile [INFO] [INFO] --- maven-source-plugin:3.0.1:jar-no-fork (attach-sources) @ adam-distribution-spark2_2.11 --- [INFO] [INFO] --- maven-javadoc-plugin:3.1.0:jar (attach-javadoc) @ adam-distribution-spark2_2.11 --- [INFO] [INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ adam-distribution-spark2_2.11 >>> [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-distribution-spark2_2.11 --- [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-distribution-spark2_2.11 --- [INFO] [INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ adam-distribution-spark2_2.11 <<< [INFO] [INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ adam-distribution-spark2_2.11 --- [INFO] No source files found [INFO] [INFO] --- maven-assembly-plugin:3.1.0:single (default) @ adam-distribution-spark2_2.11 --- [INFO] Reading assembly descriptor: src/main/assembly/assembly.xml [INFO] Building tar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-distribution/target/adam-distribution-spark2_2.11-0.29.0-SNAPSHOT-bin.tar.gz [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/smithwaterman/ longer than 100 characters. [WARNING] Resulting tar file can only be processed successfully by GNU compatible tar commands [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/apache/parquet/avro/AvroSchemaConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/consensus/package.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/consensus/ConsensusGenerator$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/consensus/ConsensusGenerator.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/smithwaterman/package.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/smithwaterman/SmithWatermanConstantGapScoring.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/smithwaterman/SmithWaterman.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/AlignmentRecord.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantAnnotation.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantContext$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/AlignmentRecord$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantCallingAnnotations.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/ProcessingStep$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantAnnotation$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantCallingAnnotations$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/TranscriptEffect$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/TranscriptEffect.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/AvroSerializer.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/package.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/ADAMKryoRegistrator.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/InputStreamWithDecoder.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/WritableSerializer.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/instrumentation/package.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/instrumentation/Timers$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/Filter$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/OntologyTermField$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/SampleField$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/VariantCallingAnnotationsField$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FieldEnumeration.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/ReadField$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/ReadGroupField$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/package.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/SliceField$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FragmentField$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/TranscriptEffectField$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FieldValue.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/ReferenceField$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FeatureField$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/VariantAnnotationField$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/GenotypeField$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/Projection$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FieldEnumeration$SchemaVal.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/SequenceField$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/AlignmentRecordField$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/DbxrefField$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/VariantField$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rich/RichAlignmentRecord.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rich/RichAlignmentRecord$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/io/SingleFastqInputFormat.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/io/FastqRecordReader.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/io/FastqInputFormat.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/io/InterleavedFastqInputFormat.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicPositionPartitioner$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/LeftOuterShuffleRegionJoinAndGroupByLeft.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/VictimlessSortedIntervalPartitionJoin.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicDatasetConversion.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicDatasetWithLineage.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/MultisampleGenomicDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/RightOuterTreeRegionJoinAndGroupByRight.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InnerTreeRegionJoinAndGroupByRight.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/RightOuterTreeRegionJoin.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/ShuffleRegionJoin.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/FullOuterShuffleRegionJoin.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/MultisampleAvroGenomicDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GFF3InFormatter$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/NarrowPeakInFormatter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GTFInFormatter$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/RDDBoundCoverageDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/CoverageDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/package.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/NarrowPeakInFormatter$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/BEDInFormatter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/NarrowPeakOutFormatter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/BEDInFormatter$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/FeatureDataset$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GFF3OutFormatter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/DatasetBoundCoverageDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/RDDBoundFeatureDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/FeatureDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/CoverageDataset$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/ParquetUnboundFeatureDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GTFInFormatter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/BEDOutFormatter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GFF3InFormatter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/DatasetBoundFeatureDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/ParquetUnboundCoverageDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GTFOutFormatter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/LeftOuterShuffleRegionJoin.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicRegionPartitioner$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/ParquetUnboundFragmentDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/InterleavedFASTQInFormatter$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/Tab6InFormatter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/package.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/FragmentDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/Tab6InFormatter$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/Tab5InFormatter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/RDDBoundFragmentDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/FragmentDataset$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/DatasetBoundFragmentDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/InterleavedFASTQInFormatter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/Tab5InFormatter$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/ADAMSaveAnyArgs.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/RDDBoundGenotypeDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/ParquetUnboundVariantDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VariantContextDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VariantContextDataset$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VariantDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VCFOutFormatter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/package.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/GenotypeDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/RDDBoundVariantContextDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VCFInFormatter$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/DatasetBoundVariantContextDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/ADAMVCFOutputFormat.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/ParquetUnboundGenotypeDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VariantDataset$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/GenotypeDataset$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VCFInFormatter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/RDDBoundVariantDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/DatasetBoundGenotypeDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/DatasetBoundVariantDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/AvroGenomicDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/RightOuterShuffleRegionJoinAndGroupByLeft.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InFormatterCompanion.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/SortedIntervalPartitionJoinWithVictims.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicBroadcast.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/FASTQInFormatter$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AlignmentRecordDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/InstrumentedADAMCRAMOutputFormat.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/BAMInFormatter$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/InstrumentedADAMSAMOutputFormat.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/SAMInFormatter$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/IncorrectMDTagException.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/DatasetBoundAlignmentRecordDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ReferencePositionPairSerializer.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/QualityScoreBin$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ReadDataset$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/SingleReadBucketSerializer.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMBAMOutputFormatHeaderLess.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/InstrumentedADAMBAMOutputFormatHeaderLess.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ParquetUnboundAlignmentRecordDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/FASTQInFormatter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AnySAMInFormatterCompanion.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AlignmentRecordDataset$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ReadDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AnySAMInFormatter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/DatasetBoundReadDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/RDDBoundReadDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/QualityScoreBin.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/InstrumentedADAMBAMOutputFormat.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AnySAMOutFormatter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/BAMInFormatter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/RDDBoundAlignmentRecordDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/InstrumentedADAMCRAMOutputFormatHeaderLess.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMCRAMOutputFormat.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/SAMInFormatter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ParquetUnboundReadDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMSAMOutputFormatHeaderLess.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/InstrumentedADAMSAMOutputFormatHeaderLess.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMSAMOutputFormat.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMBAMOutputFormat.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMCRAMOutputFormatHeaderLess.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenericGenomicDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenericConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicPositionPartitioner.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InnerShuffleRegionJoin.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/RDDBoundGenericGenomicDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/DatasetBoundGenomicDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicRegionPartitioner.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/DatasetBoundGenericGenomicDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InnerShuffleRegionJoinAndGroupByLeft.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/ReferencePartitioner.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/AvroReadGroupGenomicDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/SequenceDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/package.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/SequenceDataset$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/DatasetBoundSliceDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/SliceDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/ParquetUnboundSequenceDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/RDDBoundSliceDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/DatasetBoundSequenceDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/SliceDataset$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/ParquetUnboundSliceDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/RDDBoundSequenceDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InnerTreeRegionJoin.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ParquetFileTraversable.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/AttributeUtils$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/FileExtensions$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ParquetLogger$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ReferenceContigMap$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ReferenceContigMap.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ReferenceContigMapSerializer.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/GenomeFileReader$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/SequenceDictionaryReader$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/IndexedFastaFile.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/TextRddWriter$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/TwoBitFileSerializer.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/converters/AlignmentRecordConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/converters/VariantContextConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/converters/DefaultHeaderLines$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/converters/VariantContextConverter$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/PositionOrdering$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/SequenceDictionary.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferenceRegion$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferenceOrdering.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/SequenceRecord$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/TagType$$TypeVal.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/SequenceDictionary$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferenceRegion.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferencePosition$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/VariantContext$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/VariantContext.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/OptionalRegionOrdering$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferenceRegionSerializer.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/RegionOrdering$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/SequenceRecord.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/OptionalPositionOrdering$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReadGroupDictionary$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferencePositionSerializer.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/VariantContextSerializer.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/OptionalReferenceOrdering.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferencePosition.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReadGroupDictionary.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/javadocs/org/apache/parquet/avro/AvroSchemaConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/javadocs/org/apache/parquet/avro/class-use/AvroSchemaConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/SingleFastqInputFormat.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/FastqRecordReader.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/InterleavedFastqInputFormat.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/class-use/SingleFastqInputFormat.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/class-use/FastqRecordReader.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/class-use/FastqInputFormat.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/class-use/InterleavedFastqInputFormat.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/python/DataFrameConversionWrapper.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToCoverageDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToCoverageConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToSequencesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToGenotypesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToAlignmentRecordsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToReadsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToVariantsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToVariantContextsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToSequencesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToVariantContextConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToFeaturesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToSlicesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToVariantsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToSlicesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToVariantContextsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToSlicesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToSlicesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToSequencesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToAlignmentRecordsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToFragmentsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToSequencesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToVariantsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToGenotypesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToFragmentsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToFragmentsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToVariantContextConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToSlicesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToFragmentsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToAlignmentRecordsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToSequenceDatasetConversion.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToSlicesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToGenotypesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToReadsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToGenotypesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToSequencesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToFragmentsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToCoverageConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToAlignmentRecordDatasetConversion.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToFeaturesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToFeaturesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToSlicesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToReadsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToCoverageConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToGenotypesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToReadsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToAlignmentRecordsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToCoverageDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToReadsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToReadsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToVariantsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToSequencesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/JavaADAMContext$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToGenotypesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToAlignmentRecordsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToSequencesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToCoverageConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToFeaturesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToAlignmentRecordsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToSequencesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToFragmentsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToGenotypesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToFragmentsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToGenotypesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToFragmentsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToFeaturesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToVariantsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToAlignmentRecordsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToFeaturesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToReadsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToReadsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToGenotypesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToVariantsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToVariantContextConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToVariantContextsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToSequencesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToSlicesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToReadsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToFeaturesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToFragmentsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToVariantsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToVariantContextConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToVariantsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/JavaADAMContext.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToSlicesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToVariantsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToCoverageDatasetConversion.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToReadsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToSlicesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToReadsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToFeaturesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToAlignmentRecordsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToVariantsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToFragmentsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToVariantsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToReadsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToFeatureDatasetConversion.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToFeaturesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToCoverageDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToAlignmentRecordsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToGenotypesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToVariantsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToFeaturesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToFragmentsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToFragmentDatasetConversion.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToAlignmentRecordsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToVariantContextConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToVariantContextConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToFragmentsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToFragmentsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToCoverageConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToGenotypeDatasetConversion.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToReadsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToFeaturesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToCoverageConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToReadsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToSequencesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToAlignmentRecordsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToReadsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToFeaturesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToGenotypesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToSlicesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToSequencesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToSlicesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToVariantsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToVariantContextConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToFragmentsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToCoverageConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToGenotypesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToReadsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToAlignmentRecordsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToCoverageConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToSlicesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToAlignmentRecordsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToAlignmentRecordsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToGenotypesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToFeaturesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToVariantsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToSequencesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToSequencesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToFeaturesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToFeaturesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToCoverageDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToAlignmentRecordsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToFeaturesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToSequencesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToGenotypesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToSequencesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToFeaturesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToSequencesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToFragmentsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToFragmentsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToFeatureConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToVariantsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToGenotypesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToVariantContextDatasetConversion.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToSlicesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToFragmentsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToReadsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToVariantsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToAlignmentRecordsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToSlicesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToSequencesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToSlicesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToAlignmentRecordsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToGenotypesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToCoverageDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToGenotypesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToCoverageDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToFragmentsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToCoverageDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToAlignmentRecordsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToCoverageConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToVariantsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToSliceDatasetConversion.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToGenotypesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToSlicesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToReadDatasetConversion.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToReadsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToCoverageDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToSlicesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToCoverageConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToVariantDatasetConversion.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToVariantsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToSequencesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFragments$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSlicesArgs.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformGenotypes$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSlices$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFeatures.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFragments.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountSliceKmers$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSequences$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountReadKmersArgs.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFeatures$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformAlignments.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformGenotypes.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/MergeShardsArgs.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFragmentsArgs.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformVariantsArgs.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformVariants$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSequencesArgs.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformGenotypesArgs.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformAlignments$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSlices.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountSliceKmersArgs.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformVariants.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFeaturesArgs.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformAlignmentsArgs.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountSliceKmers.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSequences.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountReadKmers$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/repo/adam-assembly-spark2_2.11-0.29.0-SNAPSHOT-sources.jar longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/repo/adam-assembly-spark2_2.11-0.29.0-SNAPSHOT-javadoc.jar longer than 100 characters. [INFO] Building tar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-distribution/target/adam-distribution-spark2_2.11-0.29.0-SNAPSHOT-bin.tar.bz2 [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/smithwaterman/ longer than 100 characters. [WARNING] Resulting tar file can only be processed successfully by GNU compatible tar commands [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/apache/parquet/avro/AvroSchemaConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/consensus/package.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/consensus/ConsensusGenerator$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/consensus/ConsensusGenerator.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/smithwaterman/package.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/smithwaterman/SmithWatermanConstantGapScoring.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/smithwaterman/SmithWaterman.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/AlignmentRecord.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantAnnotation.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantContext$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/AlignmentRecord$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantCallingAnnotations.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/ProcessingStep$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantAnnotation$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantCallingAnnotations$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/TranscriptEffect$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/TranscriptEffect.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/AvroSerializer.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/package.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/ADAMKryoRegistrator.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/InputStreamWithDecoder.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/WritableSerializer.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/instrumentation/package.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/instrumentation/Timers$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/Filter$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/OntologyTermField$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/SampleField$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/VariantCallingAnnotationsField$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FieldEnumeration.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/ReadField$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/ReadGroupField$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/package.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/SliceField$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FragmentField$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/TranscriptEffectField$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FieldValue.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/ReferenceField$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FeatureField$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/VariantAnnotationField$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/GenotypeField$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/Projection$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FieldEnumeration$SchemaVal.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/SequenceField$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/AlignmentRecordField$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/DbxrefField$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/VariantField$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rich/RichAlignmentRecord.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rich/RichAlignmentRecord$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/io/SingleFastqInputFormat.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/io/FastqRecordReader.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/io/FastqInputFormat.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/io/InterleavedFastqInputFormat.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicPositionPartitioner$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/LeftOuterShuffleRegionJoinAndGroupByLeft.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/VictimlessSortedIntervalPartitionJoin.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicDatasetConversion.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicDatasetWithLineage.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/MultisampleGenomicDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/RightOuterTreeRegionJoinAndGroupByRight.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InnerTreeRegionJoinAndGroupByRight.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/RightOuterTreeRegionJoin.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/ShuffleRegionJoin.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/FullOuterShuffleRegionJoin.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/MultisampleAvroGenomicDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GFF3InFormatter$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/NarrowPeakInFormatter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GTFInFormatter$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/RDDBoundCoverageDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/CoverageDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/package.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/NarrowPeakInFormatter$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/BEDInFormatter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/NarrowPeakOutFormatter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/BEDInFormatter$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/FeatureDataset$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GFF3OutFormatter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/DatasetBoundCoverageDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/RDDBoundFeatureDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/FeatureDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/CoverageDataset$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/ParquetUnboundFeatureDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GTFInFormatter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/BEDOutFormatter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GFF3InFormatter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/DatasetBoundFeatureDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/ParquetUnboundCoverageDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GTFOutFormatter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/LeftOuterShuffleRegionJoin.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicRegionPartitioner$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/ParquetUnboundFragmentDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/InterleavedFASTQInFormatter$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/Tab6InFormatter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/package.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/FragmentDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/Tab6InFormatter$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/Tab5InFormatter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/RDDBoundFragmentDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/FragmentDataset$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/DatasetBoundFragmentDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/InterleavedFASTQInFormatter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/Tab5InFormatter$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/ADAMSaveAnyArgs.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/RDDBoundGenotypeDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/ParquetUnboundVariantDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VariantContextDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VariantContextDataset$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VariantDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VCFOutFormatter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/package.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/GenotypeDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/RDDBoundVariantContextDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VCFInFormatter$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/DatasetBoundVariantContextDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/ADAMVCFOutputFormat.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/ParquetUnboundGenotypeDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VariantDataset$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/GenotypeDataset$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VCFInFormatter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/RDDBoundVariantDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/DatasetBoundGenotypeDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/DatasetBoundVariantDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/AvroGenomicDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/RightOuterShuffleRegionJoinAndGroupByLeft.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InFormatterCompanion.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/SortedIntervalPartitionJoinWithVictims.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicBroadcast.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/FASTQInFormatter$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AlignmentRecordDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/InstrumentedADAMCRAMOutputFormat.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/BAMInFormatter$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/InstrumentedADAMSAMOutputFormat.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/SAMInFormatter$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/IncorrectMDTagException.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/DatasetBoundAlignmentRecordDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ReferencePositionPairSerializer.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/QualityScoreBin$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ReadDataset$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/SingleReadBucketSerializer.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMBAMOutputFormatHeaderLess.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/InstrumentedADAMBAMOutputFormatHeaderLess.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ParquetUnboundAlignmentRecordDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/FASTQInFormatter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AnySAMInFormatterCompanion.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AlignmentRecordDataset$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ReadDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AnySAMInFormatter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/DatasetBoundReadDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/RDDBoundReadDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/QualityScoreBin.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/InstrumentedADAMBAMOutputFormat.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AnySAMOutFormatter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/BAMInFormatter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/RDDBoundAlignmentRecordDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/InstrumentedADAMCRAMOutputFormatHeaderLess.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMCRAMOutputFormat.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/SAMInFormatter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ParquetUnboundReadDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMSAMOutputFormatHeaderLess.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/InstrumentedADAMSAMOutputFormatHeaderLess.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMSAMOutputFormat.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMBAMOutputFormat.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMCRAMOutputFormatHeaderLess.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenericGenomicDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenericConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicPositionPartitioner.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InnerShuffleRegionJoin.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/RDDBoundGenericGenomicDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/DatasetBoundGenomicDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicRegionPartitioner.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/DatasetBoundGenericGenomicDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InnerShuffleRegionJoinAndGroupByLeft.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/ReferencePartitioner.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/AvroReadGroupGenomicDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/SequenceDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/package.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/SequenceDataset$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/DatasetBoundSliceDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/SliceDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/ParquetUnboundSequenceDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/RDDBoundSliceDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/DatasetBoundSequenceDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/SliceDataset$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/ParquetUnboundSliceDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/RDDBoundSequenceDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InnerTreeRegionJoin.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ParquetFileTraversable.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/AttributeUtils$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/FileExtensions$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ParquetLogger$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ReferenceContigMap$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ReferenceContigMap.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ReferenceContigMapSerializer.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/GenomeFileReader$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/SequenceDictionaryReader$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/IndexedFastaFile.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/TextRddWriter$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/TwoBitFileSerializer.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/converters/AlignmentRecordConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/converters/VariantContextConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/converters/DefaultHeaderLines$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/converters/VariantContextConverter$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/PositionOrdering$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/SequenceDictionary.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferenceRegion$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferenceOrdering.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/SequenceRecord$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/TagType$$TypeVal.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/SequenceDictionary$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferenceRegion.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferencePosition$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/VariantContext$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/VariantContext.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/OptionalRegionOrdering$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferenceRegionSerializer.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/RegionOrdering$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/SequenceRecord.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/OptionalPositionOrdering$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReadGroupDictionary$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferencePositionSerializer.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/VariantContextSerializer.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/OptionalReferenceOrdering.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferencePosition.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReadGroupDictionary.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/javadocs/org/apache/parquet/avro/AvroSchemaConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/javadocs/org/apache/parquet/avro/class-use/AvroSchemaConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/SingleFastqInputFormat.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/FastqRecordReader.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/InterleavedFastqInputFormat.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/class-use/SingleFastqInputFormat.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/class-use/FastqRecordReader.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/class-use/FastqInputFormat.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/class-use/InterleavedFastqInputFormat.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/python/DataFrameConversionWrapper.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToCoverageDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToCoverageConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToSequencesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToGenotypesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToAlignmentRecordsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToReadsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToVariantsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToVariantContextsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToSequencesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToVariantContextConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToFeaturesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToSlicesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToVariantsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToSlicesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToVariantContextsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToSlicesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToSlicesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToSequencesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToAlignmentRecordsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToFragmentsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToSequencesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToVariantsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToGenotypesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToFragmentsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToFragmentsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToVariantContextConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToSlicesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToFragmentsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToAlignmentRecordsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToSequenceDatasetConversion.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToSlicesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToGenotypesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToReadsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToGenotypesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToSequencesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToFragmentsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToCoverageConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToAlignmentRecordDatasetConversion.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToFeaturesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToFeaturesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToSlicesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToReadsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToCoverageConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToGenotypesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToReadsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToAlignmentRecordsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToCoverageDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToReadsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToReadsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToVariantsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToSequencesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/JavaADAMContext$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToGenotypesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToAlignmentRecordsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToSequencesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToCoverageConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToFeaturesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToAlignmentRecordsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToSequencesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToFragmentsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToGenotypesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToFragmentsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToGenotypesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToFragmentsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToFeaturesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToVariantsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToAlignmentRecordsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToFeaturesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToReadsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToReadsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToGenotypesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToVariantsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToVariantContextConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToVariantContextsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToSequencesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToSlicesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToReadsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToFeaturesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToFragmentsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToVariantsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToVariantContextConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToVariantsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/JavaADAMContext.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToSlicesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToVariantsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToCoverageDatasetConversion.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToReadsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToSlicesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToReadsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToFeaturesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToAlignmentRecordsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToVariantsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToFragmentsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToVariantsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToReadsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToFeatureDatasetConversion.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToFeaturesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToCoverageDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToAlignmentRecordsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToGenotypesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToVariantsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToFeaturesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToFragmentsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToFragmentDatasetConversion.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToAlignmentRecordsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToVariantContextConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToVariantContextConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToFragmentsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToFragmentsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToCoverageConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToGenotypeDatasetConversion.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToReadsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToFeaturesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToCoverageConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToReadsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToSequencesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToAlignmentRecordsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToReadsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToFeaturesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToGenotypesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToSlicesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToSequencesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToSlicesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToVariantsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToVariantContextConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToFragmentsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToCoverageConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToGenotypesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToReadsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToAlignmentRecordsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToCoverageConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToSlicesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToAlignmentRecordsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToAlignmentRecordsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToGenotypesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToFeaturesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToVariantsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToSequencesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToSequencesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToFeaturesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToFeaturesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToCoverageDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToAlignmentRecordsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToFeaturesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToSequencesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToGenotypesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToSequencesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToFeaturesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToSequencesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToFragmentsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToFragmentsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToFeatureConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToVariantsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToGenotypesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToVariantContextDatasetConversion.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToSlicesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToFragmentsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToReadsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToVariantsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToAlignmentRecordsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToSlicesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToSequencesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToSlicesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToAlignmentRecordsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToGenotypesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToCoverageDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToGenotypesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToCoverageDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToFragmentsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToCoverageDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToAlignmentRecordsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToCoverageConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToVariantsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToSliceDatasetConversion.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToGenotypesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToSlicesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToReadDatasetConversion.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToReadsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToCoverageDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToSlicesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToCoverageConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToVariantDatasetConversion.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToVariantsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToSequencesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFragments$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSlicesArgs.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformGenotypes$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSlices$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFeatures.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFragments.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountSliceKmers$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSequences$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountReadKmersArgs.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFeatures$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformAlignments.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformGenotypes.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/MergeShardsArgs.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFragmentsArgs.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformVariantsArgs.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformVariants$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSequencesArgs.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformGenotypesArgs.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformAlignments$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSlices.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountSliceKmersArgs.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformVariants.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFeaturesArgs.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformAlignmentsArgs.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountSliceKmers.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSequences.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountReadKmers$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/repo/adam-assembly-spark2_2.11-0.29.0-SNAPSHOT-sources.jar longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/repo/adam-assembly-spark2_2.11-0.29.0-SNAPSHOT-javadoc.jar longer than 100 characters. [INFO] Building zip: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-distribution/target/adam-distribution-spark2_2.11-0.29.0-SNAPSHOT-bin.zip [INFO] ------------------------------------------------------------------------ [INFO] Reactor Summary: [INFO] [INFO] ADAM_2.11 .......................................... SUCCESS [ 7.319 s] [INFO] ADAM_2.11: Shader workaround ....................... SUCCESS [ 4.957 s] [INFO] ADAM_2.11: Avro-to-Dataset codegen utils ........... SUCCESS [ 3.719 s] [INFO] ADAM_2.11: Core .................................... SUCCESS [01:29 min] [INFO] ADAM_2.11: APIs for Java, Python ................... SUCCESS [ 8.962 s] [INFO] ADAM_2.11: CLI ..................................... SUCCESS [ 23.911 s] [INFO] ADAM_2.11: Assembly ................................ SUCCESS [ 13.670 s] [INFO] ADAM_2.11: Distribution ............................ SUCCESS [ 31.230 s] [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ [INFO] Total time: 03:03 min [INFO] Finished at: 2019-09-04T12:02:01-07:00 [INFO] Final Memory: 63M/1474M [INFO] ------------------------------------------------------------------------ # make sure that the distribution package contains an assembly jar # if no assembly jar is found, this will exit with code 1 and fail the build tar tzvf adam-distribution/target/adam-distribution*-bin.tar.gz | \ grep adam-assembly | \ grep jar | \ grep -v -e sources -e javadoc + grep adam-assembly + tar tzvf adam-distribution/target/adam-distribution-spark2_2.11-0.29.0-SNAPSHOT-bin.tar.gz + grep jar + grep -v -e sources -e javadoc -rw-r--r-- jenkins/jenkins 44519523 2019-09-04 12:01 adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/repo/adam-assembly-spark2_2.11-0.29.0-SNAPSHOT.jar # we are done with maven, so clean up the maven temp dir find ${ADAM_MVN_TMP_DIR} + find /tmp/adamTestMvnb0spyFX /tmp/adamTestMvnb0spyFX /tmp/adamTestMvnb0spyFX/TempSuite5464574539131685954 /tmp/adamTestMvnb0spyFX/TempSuite3420108552896156753 /tmp/adamTestMvnb0spyFX/reads126691866037091032189 /tmp/adamTestMvnb0spyFX/reads126691866037091032189/reads12.fq /tmp/adamTestMvnb0spyFX/reads126691866037091032189/reads12.fq/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/reads126691866037091032189/reads12.fq/.part-00000.crc /tmp/adamTestMvnb0spyFX/reads126691866037091032189/reads12.fq/part-00000 /tmp/adamTestMvnb0spyFX/reads126691866037091032189/reads12.fq/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite8797568639728211684 /tmp/adamTestMvnb0spyFX/TempSuite614685694657332289.bam /tmp/adamTestMvnb0spyFX/TempSuite4693194982570133225 /tmp/adamTestMvnb0spyFX/adam-cli.TransformFeaturesSuite998613024075797478.adam /tmp/adamTestMvnb0spyFX/adam-cli.TransformFeaturesSuite998613024075797478.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/adam-cli.TransformFeaturesSuite998613024075797478.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/adam-cli.TransformFeaturesSuite998613024075797478.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/adam-cli.TransformFeaturesSuite998613024075797478.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/adam-cli.TransformFeaturesSuite998613024075797478.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/adam-cli.TransformFeaturesSuite998613024075797478.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/adam-cli.TransformFeaturesSuite998613024075797478.adam/_metadata /tmp/adamTestMvnb0spyFX/adam-cli.TransformFeaturesSuite998613024075797478.adam/_samples.avro /tmp/adamTestMvnb0spyFX/adam-cli.TransformFeaturesSuite998613024075797478.adam/_common_metadata /tmp/adamTestMvnb0spyFX/adam-cli.TransformFeaturesSuite998613024075797478.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/adam-cli.TransformFeaturesSuite998613024075797478.adam/_references.avro /tmp/adamTestMvnb0spyFX/adam-cli.TransformFeaturesSuite998613024075797478.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite9049664041555074834 /tmp/adamTestMvnb0spyFX/TempSuite1078831768458688653.adam /tmp/adamTestMvnb0spyFX/TempSuite1078831768458688653.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite1078831768458688653.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite1078831768458688653.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite1078831768458688653.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite1078831768458688653.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite1078831768458688653.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite1078831768458688653.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite1078831768458688653.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite1078831768458688653.adam/_samples.avro /tmp/adamTestMvnb0spyFX/TempSuite1078831768458688653.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite1078831768458688653.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite1078831768458688653.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite1078831768458688653.adam/_header /tmp/adamTestMvnb0spyFX/TempSuite1078831768458688653.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite3679370580240936990 /tmp/adamTestMvnb0spyFX/TempSuite3143468334918861887 /tmp/adamTestMvnb0spyFX/TempSuite5386053368089779700.adam /tmp/adamTestMvnb0spyFX/TempSuite5386053368089779700.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite5386053368089779700.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite5386053368089779700.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite5386053368089779700.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite5386053368089779700.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite5386053368089779700.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite5386053368089779700.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite5386053368089779700.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite5386053368089779700.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite5386053368089779700.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite5386053368089779700.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite5386053368089779700.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/TempSuite5386053368089779700.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/TempSuite5386053368089779700.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/.TempSuite614685694657332289.bam.crc /tmp/adamTestMvnb0spyFX/TempSuite1678870570121227040 /tmp/adamTestMvnb0spyFX/201895242942384110 /tmp/adamTestMvnb0spyFX/201895242942384110/sorted.vcf /tmp/adamTestMvnb0spyFX/201895242942384110/.sorted.vcf.crc /tmp/adamTestMvnb0spyFX/TempSuite4828016876548337111 /tmp/adamTestMvnb0spyFX/TempSuite7906536727337548225.adam /tmp/adamTestMvnb0spyFX/TempSuite7906536727337548225.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite7906536727337548225.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite7906536727337548225.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite7906536727337548225.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite7906536727337548225.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite7906536727337548225.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite7906536727337548225.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite7906536727337548225.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite7906536727337548225.adam/_samples.avro /tmp/adamTestMvnb0spyFX/TempSuite7906536727337548225.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite7906536727337548225.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite7906536727337548225.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite7906536727337548225.adam/_header /tmp/adamTestMvnb0spyFX/TempSuite7906536727337548225.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite2072372856690911994.adam /tmp/adamTestMvnb0spyFX/TempSuite2072372856690911994.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite2072372856690911994.adam/part-r-00001.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite2072372856690911994.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite2072372856690911994.adam/part-r-00002.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite2072372856690911994.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite2072372856690911994.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite2072372856690911994.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite2072372856690911994.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite2072372856690911994.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite2072372856690911994.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite2072372856690911994.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite2072372856690911994.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite2072372856690911994.adam/_samples.avro /tmp/adamTestMvnb0spyFX/TempSuite2072372856690911994.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite2072372856690911994.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite2072372856690911994.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite2072372856690911994.adam/part-r-00003.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite2072372856690911994.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite1772560017125603500 /tmp/adamTestMvnb0spyFX/TempSuite4864908485560893549 /tmp/adamTestMvnb0spyFX/TempSuite6598292300434989908 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite374169850220731375.bed /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite374169850220731375.bed/.part-00001.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite374169850220731375.bed/.part-00003.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite374169850220731375.bed/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite374169850220731375.bed/part-00003 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite374169850220731375.bed/.part-00000.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite374169850220731375.bed/part-00000 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite374169850220731375.bed/part-00002 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite374169850220731375.bed/_SUCCESS /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite374169850220731375.bed/part-00001 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite374169850220731375.bed/.part-00002.crc /tmp/adamTestMvnb0spyFX/TempSuite3780836668371200176.adam /tmp/adamTestMvnb0spyFX/TempSuite3780836668371200176.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite3780836668371200176.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite3780836668371200176.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite3780836668371200176.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite3780836668371200176.adam/.part-00000-cc09419c-2723-401d-b1c4-feb5ff9e1c28-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite3780836668371200176.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite3780836668371200176.adam/_header /tmp/adamTestMvnb0spyFX/TempSuite3780836668371200176.adam/part-00000-cc09419c-2723-401d-b1c4-feb5ff9e1c28-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite6154560761410630868 /tmp/adamTestMvnb0spyFX/TempSuite5506579287596714005 /tmp/adamTestMvnb0spyFX/2288597829619487973 /tmp/adamTestMvnb0spyFX/2288597829619487973/binned.adam /tmp/adamTestMvnb0spyFX/2288597829619487973/binned.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/2288597829619487973/binned.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/2288597829619487973/binned.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/2288597829619487973/binned.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/2288597829619487973/binned.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/2288597829619487973/binned.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/2288597829619487973/binned.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/2288597829619487973/binned.adam/_metadata /tmp/adamTestMvnb0spyFX/2288597829619487973/binned.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/2288597829619487973/binned.adam/_common_metadata /tmp/adamTestMvnb0spyFX/2288597829619487973/binned.adam/_references.avro /tmp/adamTestMvnb0spyFX/2288597829619487973/binned.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/2288597829619487973/binned.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/2288597829619487973/binned.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/.TempSuite8184291913215119168.bam.crc /tmp/adamTestMvnb0spyFX/3815677439316912480 /tmp/adamTestMvnb0spyFX/3815677439316912480/.sorted-variants.lex.vcf.crc /tmp/adamTestMvnb0spyFX/3815677439316912480/sorted-variants.lex.vcf /tmp/adamTestMvnb0spyFX/4971917246740466590 /tmp/adamTestMvnb0spyFX/4971917246740466590/tag.sam /tmp/adamTestMvnb0spyFX/4971917246740466590/.tag.sam.crc /tmp/adamTestMvnb0spyFX/TempSuite430391504201395559 /tmp/adamTestMvnb0spyFX/unordered.sam4996739990555817488.sam /tmp/adamTestMvnb0spyFX/TempSuite7926258336075241955.adam /tmp/adamTestMvnb0spyFX/TempSuite7926258336075241955.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite7926258336075241955.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite7926258336075241955.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite7926258336075241955.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite7926258336075241955.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite7926258336075241955.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite7926258336075241955.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite7926258336075241955.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite7926258336075241955.adam/_samples.avro /tmp/adamTestMvnb0spyFX/TempSuite7926258336075241955.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite7926258336075241955.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite7926258336075241955.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite7926258336075241955.adam/_header /tmp/adamTestMvnb0spyFX/TempSuite7926258336075241955.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite4765131985617864125_2.fq /tmp/adamTestMvnb0spyFX/TempSuite3912072694921745770.adam /tmp/adamTestMvnb0spyFX/TempSuite3912072694921745770.adam/.part-00002-13da4201-b896-431f-97e7-ecc8af71d96e-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite3912072694921745770.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite3912072694921745770.adam/.part-00000-13da4201-b896-431f-97e7-ecc8af71d96e-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite3912072694921745770.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite3912072694921745770.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite3912072694921745770.adam/part-00002-13da4201-b896-431f-97e7-ecc8af71d96e-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite3912072694921745770.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite3912072694921745770.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite3912072694921745770.adam/part-00000-13da4201-b896-431f-97e7-ecc8af71d96e-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite3912072694921745770.adam/.part-00001-13da4201-b896-431f-97e7-ecc8af71d96e-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite3912072694921745770.adam/_header /tmp/adamTestMvnb0spyFX/TempSuite3912072694921745770.adam/part-00001-13da4201-b896-431f-97e7-ecc8af71d96e-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite6492713183736671984 /tmp/adamTestMvnb0spyFX/.ReadDatasetSuite3626990993401898484.fastq.crc /tmp/adamTestMvnb0spyFX/TempSuite1652761520076651340.fa /tmp/adamTestMvnb0spyFX/TempSuite1652761520076651340.fa/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite1652761520076651340.fa/.part-00000.crc /tmp/adamTestMvnb0spyFX/TempSuite1652761520076651340.fa/part-00000 /tmp/adamTestMvnb0spyFX/TempSuite1652761520076651340.fa/_SUCCESS /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite6327399194647749912.gff3 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite6327399194647749912.gff3/.part-00001.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite6327399194647749912.gff3/.part-00003.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite6327399194647749912.gff3/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite6327399194647749912.gff3/part-00003 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite6327399194647749912.gff3/.part-00000.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite6327399194647749912.gff3/part-00000 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite6327399194647749912.gff3/part-00002 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite6327399194647749912.gff3/_SUCCESS /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite6327399194647749912.gff3/part-00001 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite6327399194647749912.gff3/.part-00002.crc /tmp/adamTestMvnb0spyFX/ordered.sam1001432845763276619.sam /tmp/adamTestMvnb0spyFX/TempSuite3118870385670185840.bed /tmp/adamTestMvnb0spyFX/TempSuite3118870385670185840.bed/.part-00001.crc /tmp/adamTestMvnb0spyFX/TempSuite3118870385670185840.bed/.part-00003.crc /tmp/adamTestMvnb0spyFX/TempSuite3118870385670185840.bed/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite3118870385670185840.bed/part-00003 /tmp/adamTestMvnb0spyFX/TempSuite3118870385670185840.bed/.part-00000.crc /tmp/adamTestMvnb0spyFX/TempSuite3118870385670185840.bed/part-00000 /tmp/adamTestMvnb0spyFX/TempSuite3118870385670185840.bed/part-00002 /tmp/adamTestMvnb0spyFX/TempSuite3118870385670185840.bed/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite3118870385670185840.bed/part-00001 /tmp/adamTestMvnb0spyFX/TempSuite3118870385670185840.bed/.part-00002.crc /tmp/adamTestMvnb0spyFX/TempSuite5627937008241549877 /tmp/adamTestMvnb0spyFX/TempSuite1011849262443014445 /tmp/adamTestMvnb0spyFX/small.sam3768732772329353024.sam /tmp/adamTestMvnb0spyFX/TempSuite756233147054976027.adam /tmp/adamTestMvnb0spyFX/TempSuite756233147054976027.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite756233147054976027.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite756233147054976027.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite756233147054976027.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite756233147054976027.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite756233147054976027.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite756233147054976027.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite756233147054976027.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite756233147054976027.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite756233147054976027.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite756233147054976027.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite756233147054976027.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/TempSuite756233147054976027.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/TempSuite756233147054976027.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/6087175021843878069 /tmp/adamTestMvnb0spyFX/6087175021843878069/.ordered.sam.crc /tmp/adamTestMvnb0spyFX/6087175021843878069/ordered.sam /tmp/adamTestMvnb0spyFX/TempSuite2092335097302324231.adam /tmp/adamTestMvnb0spyFX/TempSuite2092335097302324231.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite2092335097302324231.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite2092335097302324231.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite2092335097302324231.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite2092335097302324231.adam/part-00000-2fd09340-0b5c-4883-ba5d-03f466cf6c11-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite2092335097302324231.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite2092335097302324231.adam/_header /tmp/adamTestMvnb0spyFX/TempSuite2092335097302324231.adam/.part-00000-2fd09340-0b5c-4883-ba5d-03f466cf6c11-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/.TempSuite489899670140203810.sam.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite6555175448011988308.gff3 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite6555175448011988308.gff3/.part-00001.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite6555175448011988308.gff3/.part-00003.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite6555175448011988308.gff3/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite6555175448011988308.gff3/part-00003 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite6555175448011988308.gff3/.part-00000.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite6555175448011988308.gff3/part-00000 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite6555175448011988308.gff3/part-00002 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite6555175448011988308.gff3/_SUCCESS /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite6555175448011988308.gff3/part-00001 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite6555175448011988308.gff3/.part-00002.crc /tmp/adamTestMvnb0spyFX/7878333973097001872 /tmp/adamTestMvnb0spyFX/7878333973097001872/out.sam_head /tmp/adamTestMvnb0spyFX/7878333973097001872/.out.sam_head.crc /tmp/adamTestMvnb0spyFX/7878333973097001872/out.sam_tail /tmp/adamTestMvnb0spyFX/7878333973097001872/out.sam_tail/part-r-00002.sam /tmp/adamTestMvnb0spyFX/7878333973097001872/out.sam_tail/part-r-00000.sam /tmp/adamTestMvnb0spyFX/7878333973097001872/out.sam_tail/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/7878333973097001872/out.sam_tail/_SUCCESS /tmp/adamTestMvnb0spyFX/7878333973097001872/out.sam_tail/.part-r-00000.sam.crc /tmp/adamTestMvnb0spyFX/7878333973097001872/out.sam_tail/part-r-00003.sam /tmp/adamTestMvnb0spyFX/7878333973097001872/out.sam_tail/.part-r-00002.sam.crc /tmp/adamTestMvnb0spyFX/7878333973097001872/out.sam_tail/.part-r-00001.sam.crc /tmp/adamTestMvnb0spyFX/7878333973097001872/out.sam_tail/part-r-00001.sam /tmp/adamTestMvnb0spyFX/7878333973097001872/out.sam_tail/.part-r-00003.sam.crc /tmp/adamTestMvnb0spyFX/7878333973097001872/.out.sam.crc /tmp/adamTestMvnb0spyFX/7878333973097001872/out.sam /tmp/adamTestMvnb0spyFX/TempSuite6195967906134213227.adam /tmp/adamTestMvnb0spyFX/TempSuite6195967906134213227.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite6195967906134213227.adam/.part-00000-9c28987f-1327-4b07-afc6-02aed1e4d047-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite6195967906134213227.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite6195967906134213227.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite6195967906134213227.adam/part-00000-9c28987f-1327-4b07-afc6-02aed1e4d047-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite6195967906134213227.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite6195967906134213227.adam/_samples.avro /tmp/adamTestMvnb0spyFX/TempSuite6195967906134213227.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite6195967906134213227.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite6195967906134213227.adam/_header /tmp/adamTestMvnb0spyFX/TempSuite8659338804758010574.adam /tmp/adamTestMvnb0spyFX/TempSuite8659338804758010574.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite8659338804758010574.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite8659338804758010574.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite8659338804758010574.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite8659338804758010574.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite8659338804758010574.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite8659338804758010574.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite8659338804758010574.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite8659338804758010574.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite8659338804758010574.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite8659338804758010574.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite8659338804758010574.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/TempSuite8659338804758010574.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/TempSuite8659338804758010574.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/random.vcf4186728714432175692.vcf /tmp/adamTestMvnb0spyFX/TempSuite8943576146353719399.adam /tmp/adamTestMvnb0spyFX/TempSuite8943576146353719399.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite8943576146353719399.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite8943576146353719399.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite8943576146353719399.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite8943576146353719399.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite8943576146353719399.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite8943576146353719399.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite8943576146353719399.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite8943576146353719399.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite8943576146353719399.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite3044828612549876309 /tmp/adamTestMvnb0spyFX/TempSuite7309803663058985174 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite8676399588537632306 /tmp/adamTestMvnb0spyFX/7557329092242196884 /tmp/adamTestMvnb0spyFX/7557329092242196884/.sorted-variants.lex.vcf.crc /tmp/adamTestMvnb0spyFX/7557329092242196884/sorted-variants.lex.vcf /tmp/adamTestMvnb0spyFX/SliceDatasetSuite3241447007361422577.adam /tmp/adamTestMvnb0spyFX/SliceDatasetSuite3241447007361422577.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnb0spyFX/SliceDatasetSuite3241447007361422577.adam/part-r-00001.gz.parquet /tmp/adamTestMvnb0spyFX/SliceDatasetSuite3241447007361422577.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/SliceDatasetSuite3241447007361422577.adam/part-r-00002.gz.parquet /tmp/adamTestMvnb0spyFX/SliceDatasetSuite3241447007361422577.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/SliceDatasetSuite3241447007361422577.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/SliceDatasetSuite3241447007361422577.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/SliceDatasetSuite3241447007361422577.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/SliceDatasetSuite3241447007361422577.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/SliceDatasetSuite3241447007361422577.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnb0spyFX/SliceDatasetSuite3241447007361422577.adam/_metadata /tmp/adamTestMvnb0spyFX/SliceDatasetSuite3241447007361422577.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnb0spyFX/SliceDatasetSuite3241447007361422577.adam/_common_metadata /tmp/adamTestMvnb0spyFX/SliceDatasetSuite3241447007361422577.adam/_references.avro /tmp/adamTestMvnb0spyFX/SliceDatasetSuite3241447007361422577.adam/part-r-00003.gz.parquet /tmp/adamTestMvnb0spyFX/SliceDatasetSuite3241447007361422577.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite704424410276040594.adam /tmp/adamTestMvnb0spyFX/TempSuite704424410276040594.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite704424410276040594.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite704424410276040594.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite704424410276040594.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite704424410276040594.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite704424410276040594.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite704424410276040594.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite704424410276040594.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite704424410276040594.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite704424410276040594.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite1678870570121227040.adam /tmp/adamTestMvnb0spyFX/TempSuite1678870570121227040.adam/part-00000-4935172c-f211-4e56-9b67-93c92623adc4-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite1678870570121227040.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite1678870570121227040.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite1678870570121227040.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite1678870570121227040.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite1678870570121227040.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite1678870570121227040.adam/.part-00000-4935172c-f211-4e56-9b67-93c92623adc4-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite1678870570121227040.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite1678870570121227040.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/TempSuite1678870570121227040.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/ordered.sam1802942346276162809.sam /tmp/adamTestMvnb0spyFX/TempSuite5344055516490893797.adam /tmp/adamTestMvnb0spyFX/TempSuite5344055516490893797.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite5344055516490893797.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite5344055516490893797.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite5344055516490893797.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite5344055516490893797.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite5344055516490893797.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite5344055516490893797.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite5344055516490893797.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite5344055516490893797.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite5344055516490893797.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite5344055516490893797.adam/_header /tmp/adamTestMvnb0spyFX/TempSuite5344055516490893797.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite7244392612644973173reads12.sam_2 /tmp/adamTestMvnb0spyFX/TempSuite6060489827063887187.bed /tmp/adamTestMvnb0spyFX/TempSuite6060489827063887187.bed/.part-00001.crc /tmp/adamTestMvnb0spyFX/TempSuite6060489827063887187.bed/.part-00003.crc /tmp/adamTestMvnb0spyFX/TempSuite6060489827063887187.bed/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite6060489827063887187.bed/part-00003 /tmp/adamTestMvnb0spyFX/TempSuite6060489827063887187.bed/.part-00000.crc /tmp/adamTestMvnb0spyFX/TempSuite6060489827063887187.bed/part-00000 /tmp/adamTestMvnb0spyFX/TempSuite6060489827063887187.bed/part-00002 /tmp/adamTestMvnb0spyFX/TempSuite6060489827063887187.bed/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite6060489827063887187.bed/part-00001 /tmp/adamTestMvnb0spyFX/TempSuite6060489827063887187.bed/.part-00002.crc /tmp/adamTestMvnb0spyFX/TempSuite861490021961224226.adam /tmp/adamTestMvnb0spyFX/TempSuite861490021961224226.adam/.part-00001-f7020cc2-cfae-4df5-8ab4-25370b862e06-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite861490021961224226.adam/part-00002-f7020cc2-cfae-4df5-8ab4-25370b862e06-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite861490021961224226.adam/.part-00002-f7020cc2-cfae-4df5-8ab4-25370b862e06-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite861490021961224226.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite861490021961224226.adam/part-00001-f7020cc2-cfae-4df5-8ab4-25370b862e06-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite861490021961224226.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite861490021961224226.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite861490021961224226.adam/.part-00000-f7020cc2-cfae-4df5-8ab4-25370b862e06-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite861490021961224226.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite861490021961224226.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite861490021961224226.adam/part-00000-f7020cc2-cfae-4df5-8ab4-25370b862e06-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite861490021961224226.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite861490021961224226.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/TempSuite861490021961224226.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite1207087682448426647 /tmp/adamTestMvnb0spyFX/TempSuite4755715692202563781.adam /tmp/adamTestMvnb0spyFX/TempSuite4755715692202563781.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite4755715692202563781.adam/part-00000-44b086e0-6731-4590-943e-269481b3ba32-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite4755715692202563781.adam/.part-00000-44b086e0-6731-4590-943e-269481b3ba32-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite4755715692202563781.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite4755715692202563781.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite4755715692202563781.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite4755715692202563781.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite4755715692202563781.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite4755715692202563781.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/TempSuite4755715692202563781.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/TempSuite2812302508996262869 /tmp/adamTestMvnb0spyFX/TempSuite2506962681233031650 /tmp/adamTestMvnb0spyFX/TempSuite2474023075788749203 /tmp/adamTestMvnb0spyFX/TempSuite6995010579723676711.adam /tmp/adamTestMvnb0spyFX/TempSuite6995010579723676711.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite6995010579723676711.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite6995010579723676711.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite6995010579723676711.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite6995010579723676711.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite6995010579723676711.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite6995010579723676711.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite6995010579723676711.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite6995010579723676711.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite6995010579723676711.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite6995010579723676711.adam/_header /tmp/adamTestMvnb0spyFX/TempSuite6995010579723676711.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite2941598001741898828 /tmp/adamTestMvnb0spyFX/TempSuite837340356408202217 /tmp/adamTestMvnb0spyFX/TempSuite5077908859890504286 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite78092404543370815 /tmp/adamTestMvnb0spyFX/TempSuite3422462322184607747 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite2378153506775213732.narrowPeak /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite2378153506775213732.narrowPeak/.part-00001.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite2378153506775213732.narrowPeak/.part-00003.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite2378153506775213732.narrowPeak/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite2378153506775213732.narrowPeak/part-00003 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite2378153506775213732.narrowPeak/.part-00000.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite2378153506775213732.narrowPeak/part-00000 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite2378153506775213732.narrowPeak/part-00002 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite2378153506775213732.narrowPeak/_SUCCESS /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite2378153506775213732.narrowPeak/part-00001 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite2378153506775213732.narrowPeak/.part-00002.crc /tmp/adamTestMvnb0spyFX/1898506251724038886 /tmp/adamTestMvnb0spyFX/1898506251724038886/genotypes.adam /tmp/adamTestMvnb0spyFX/1898506251724038886/genotypes.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/1898506251724038886/genotypes.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/1898506251724038886/genotypes.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/1898506251724038886/genotypes.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/1898506251724038886/genotypes.adam/._header.crc /tmp/adamTestMvnb0spyFX/1898506251724038886/genotypes.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/1898506251724038886/genotypes.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/1898506251724038886/genotypes.adam/_metadata /tmp/adamTestMvnb0spyFX/1898506251724038886/genotypes.adam/_samples.avro /tmp/adamTestMvnb0spyFX/1898506251724038886/genotypes.adam/_common_metadata /tmp/adamTestMvnb0spyFX/1898506251724038886/genotypes.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/1898506251724038886/genotypes.adam/_references.avro /tmp/adamTestMvnb0spyFX/1898506251724038886/genotypes.adam/_header /tmp/adamTestMvnb0spyFX/1898506251724038886/genotypes.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite3659890415246357886 /tmp/adamTestMvnb0spyFX/TempSuite6121877681860644599_2.fq /tmp/adamTestMvnb0spyFX/TempSuite6121877681860644599_2.fq/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite6121877681860644599_2.fq/.part-00000.crc /tmp/adamTestMvnb0spyFX/TempSuite6121877681860644599_2.fq/part-00000 /tmp/adamTestMvnb0spyFX/TempSuite6121877681860644599_2.fq/_SUCCESS /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite2111738397040297335.fasta /tmp/adamTestMvnb0spyFX/TempSuite4928697800950263003 /tmp/adamTestMvnb0spyFX/TempSuite7341459607662443396.adam /tmp/adamTestMvnb0spyFX/TempSuite7341459607662443396.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite7341459607662443396.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite7341459607662443396.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite7341459607662443396.adam/part-00000-44fbdc1a-45e2-4d64-8425-4605f2791e96-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite7341459607662443396.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite7341459607662443396.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite7341459607662443396.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite7341459607662443396.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/TempSuite7341459607662443396.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/TempSuite7341459607662443396.adam/.part-00000-44fbdc1a-45e2-4d64-8425-4605f2791e96-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/bqsr1.sam8083012415253728728.sam /tmp/adamTestMvnb0spyFX/TempSuite139192938210163960 /tmp/adamTestMvnb0spyFX/TempSuite6460163979420353916.adam /tmp/adamTestMvnb0spyFX/TempSuite6460163979420353916.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite6460163979420353916.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite6460163979420353916.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite6460163979420353916.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite6460163979420353916.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite6460163979420353916.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite6460163979420353916.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite6460163979420353916.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite6460163979420353916.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite6460163979420353916.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite6460163979420353916.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite6460163979420353916.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/TempSuite6460163979420353916.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/TempSuite6460163979420353916.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite3179596302581227636 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite4276104823206437063.interval_list /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite4276104823206437063.interval_list/.part-00001.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite4276104823206437063.interval_list/.part-00003.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite4276104823206437063.interval_list/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite4276104823206437063.interval_list/part-00003 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite4276104823206437063.interval_list/.part-00000.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite4276104823206437063.interval_list/part-00000 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite4276104823206437063.interval_list/part-00002 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite4276104823206437063.interval_list/_SUCCESS /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite4276104823206437063.interval_list/part-00001 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite4276104823206437063.interval_list/.part-00002.crc /tmp/adamTestMvnb0spyFX/TempSuite5161872576781069751.bed /tmp/adamTestMvnb0spyFX/TempSuite5161872576781069751.bed/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite5161872576781069751.bed/.part-00000.crc /tmp/adamTestMvnb0spyFX/TempSuite5161872576781069751.bed/part-00000 /tmp/adamTestMvnb0spyFX/TempSuite5161872576781069751.bed/_SUCCESS /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite7899441064088163536.fasta /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite7899441064088163536.fasta/.part-00001.crc /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite7899441064088163536.fasta/.part-00003.crc /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite7899441064088163536.fasta/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite7899441064088163536.fasta/part-00003 /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite7899441064088163536.fasta/.part-00000.crc /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite7899441064088163536.fasta/part-00000 /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite7899441064088163536.fasta/part-00002 /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite7899441064088163536.fasta/_SUCCESS /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite7899441064088163536.fasta/part-00001 /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite7899441064088163536.fasta/.part-00002.crc /tmp/adamTestMvnb0spyFX/TempSuite2447934520293824200 /tmp/adamTestMvnb0spyFX/TempSuite5161872576781069751 /tmp/adamTestMvnb0spyFX/TempSuite8507059897789343805 /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite1162569895607580554 /tmp/adamTestMvnb0spyFX/TempSuite4926876495993202879.adam /tmp/adamTestMvnb0spyFX/TempSuite4926876495993202879.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite4926876495993202879.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite4926876495993202879.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite4926876495993202879.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite4926876495993202879.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite4926876495993202879.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite4926876495993202879.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite4926876495993202879.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite4926876495993202879.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite4926876495993202879.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite4926876495993202879.adam/_header /tmp/adamTestMvnb0spyFX/TempSuite4926876495993202879.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite492759748512553004 /tmp/adamTestMvnb0spyFX/TempSuite8687534868413937731 /tmp/adamTestMvnb0spyFX/TempSuite41714179832420415.adam /tmp/adamTestMvnb0spyFX/TempSuite41714179832420415.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite41714179832420415.adam/part-r-00001.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite41714179832420415.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite41714179832420415.adam/part-r-00002.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite41714179832420415.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite41714179832420415.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite41714179832420415.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite41714179832420415.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite41714179832420415.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite41714179832420415.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite41714179832420415.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite41714179832420415.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite41714179832420415.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite41714179832420415.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite41714179832420415.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite41714179832420415.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite41714179832420415.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/TempSuite41714179832420415.adam/part-r-00003.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite41714179832420415.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/TempSuite41714179832420415.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/4623171716076110489 /tmp/adamTestMvnb0spyFX/4623171716076110489/variants.lex.adam /tmp/adamTestMvnb0spyFX/4623171716076110489/variants.lex.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/4623171716076110489/variants.lex.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/4623171716076110489/variants.lex.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/4623171716076110489/variants.lex.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/4623171716076110489/variants.lex.adam/._header.crc /tmp/adamTestMvnb0spyFX/4623171716076110489/variants.lex.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/4623171716076110489/variants.lex.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/4623171716076110489/variants.lex.adam/_metadata /tmp/adamTestMvnb0spyFX/4623171716076110489/variants.lex.adam/_common_metadata /tmp/adamTestMvnb0spyFX/4623171716076110489/variants.lex.adam/_references.avro /tmp/adamTestMvnb0spyFX/4623171716076110489/variants.lex.adam/_header /tmp/adamTestMvnb0spyFX/4623171716076110489/variants.lex.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite7278097286778956513.bed /tmp/adamTestMvnb0spyFX/TempSuite7278097286778956513.bed/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite7278097286778956513.bed/.part-00000.crc /tmp/adamTestMvnb0spyFX/TempSuite7278097286778956513.bed/part-00000 /tmp/adamTestMvnb0spyFX/TempSuite7278097286778956513.bed/_SUCCESS /tmp/adamTestMvnb0spyFX/8655321341194487220 /tmp/adamTestMvnb0spyFX/8655321341194487220/predicate.1.adam /tmp/adamTestMvnb0spyFX/8655321341194487220/predicate.1.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/8655321341194487220/predicate.1.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/8655321341194487220/predicate.1.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/8655321341194487220/predicate.1.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/8655321341194487220/predicate.1.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/8655321341194487220/predicate.1.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/8655321341194487220/predicate.1.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/8655321341194487220/predicate.1.adam/_metadata /tmp/adamTestMvnb0spyFX/8655321341194487220/predicate.1.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/8655321341194487220/predicate.1.adam/_common_metadata /tmp/adamTestMvnb0spyFX/8655321341194487220/predicate.1.adam/_references.avro /tmp/adamTestMvnb0spyFX/8655321341194487220/predicate.1.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/8655321341194487220/predicate.1.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/8655321341194487220/predicate.1.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite1018537110273258886.adam /tmp/adamTestMvnb0spyFX/TempSuite1018537110273258886.adam/.part-00000-dbcd1078-7165-4849-80bf-5f3db4876891-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite1018537110273258886.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite1018537110273258886.adam/part-00000-dbcd1078-7165-4849-80bf-5f3db4876891-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite1018537110273258886.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite1018537110273258886.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite1018537110273258886.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite1018537110273258886.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite1018537110273258886.adam/_header /tmp/adamTestMvnb0spyFX/TempSuite3110121416558635719 /tmp/adamTestMvnb0spyFX/.ReadDatasetSuite4014605438659490751.fastq.crc /tmp/adamTestMvnb0spyFX/TempSuite7288882369142853552 /tmp/adamTestMvnb0spyFX/TempSuite2072372856690911994 /tmp/adamTestMvnb0spyFX/TempSuite7022375763564403954.adam /tmp/adamTestMvnb0spyFX/TempSuite7022375763564403954.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite7022375763564403954.adam/part-r-00001.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite7022375763564403954.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite7022375763564403954.adam/part-r-00002.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite7022375763564403954.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite7022375763564403954.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite7022375763564403954.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite7022375763564403954.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite7022375763564403954.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite7022375763564403954.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite7022375763564403954.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite7022375763564403954.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite7022375763564403954.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite7022375763564403954.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite7022375763564403954.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite7022375763564403954.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite7022375763564403954.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/TempSuite7022375763564403954.adam/part-r-00003.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite7022375763564403954.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/TempSuite7022375763564403954.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite1011849262443014445.adam /tmp/adamTestMvnb0spyFX/TempSuite1011849262443014445.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite1011849262443014445.adam/._partitionedByStartPos.crc /tmp/adamTestMvnb0spyFX/TempSuite1011849262443014445.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite1011849262443014445.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite1011849262443014445.adam/_samples.avro /tmp/adamTestMvnb0spyFX/TempSuite1011849262443014445.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite1011849262443014445.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite1011849262443014445.adam/referenceName=1 /tmp/adamTestMvnb0spyFX/TempSuite1011849262443014445.adam/referenceName=1/positionBin=14 /tmp/adamTestMvnb0spyFX/TempSuite1011849262443014445.adam/referenceName=1/positionBin=14/.part-00000-33311a12-5a88-4d3a-b5b7-242e1194f2e3.c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite1011849262443014445.adam/referenceName=1/positionBin=14/part-00000-33311a12-5a88-4d3a-b5b7-242e1194f2e3.c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite1011849262443014445.adam/referenceName=1/positionBin=169 /tmp/adamTestMvnb0spyFX/TempSuite1011849262443014445.adam/referenceName=1/positionBin=169/part-00001-33311a12-5a88-4d3a-b5b7-242e1194f2e3.c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite1011849262443014445.adam/referenceName=1/positionBin=169/.part-00001-33311a12-5a88-4d3a-b5b7-242e1194f2e3.c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite1011849262443014445.adam/referenceName=1/positionBin=240 /tmp/adamTestMvnb0spyFX/TempSuite1011849262443014445.adam/referenceName=1/positionBin=240/.part-00002-33311a12-5a88-4d3a-b5b7-242e1194f2e3.c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite1011849262443014445.adam/referenceName=1/positionBin=240/part-00002-33311a12-5a88-4d3a-b5b7-242e1194f2e3.c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite1011849262443014445.adam/referenceName=1/positionBin=0 /tmp/adamTestMvnb0spyFX/TempSuite1011849262443014445.adam/referenceName=1/positionBin=0/.part-00000-33311a12-5a88-4d3a-b5b7-242e1194f2e3.c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite1011849262443014445.adam/referenceName=1/positionBin=0/part-00000-33311a12-5a88-4d3a-b5b7-242e1194f2e3.c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite1011849262443014445.adam/_partitionedByStartPos /tmp/adamTestMvnb0spyFX/TempSuite6018336827301953753 /tmp/adamTestMvnb0spyFX/TempSuite8894437439064876761 /tmp/adamTestMvnb0spyFX/TempSuite1612546435509457993 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite1207087682448426647.gff3 /tmp/adamTestMvnb0spyFX/TempSuite5960320404444248300 /tmp/adamTestMvnb0spyFX/TempSuite5389936319198997066.adam /tmp/adamTestMvnb0spyFX/TempSuite5389936319198997066.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite5389936319198997066.adam/.part-00000-86195e4a-7b6e-4980-8c65-25841d9306cb-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite5389936319198997066.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite5389936319198997066.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite5389936319198997066.adam/part-00000-86195e4a-7b6e-4980-8c65-25841d9306cb-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite5389936319198997066.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite5389936319198997066.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite5389936319198997066.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite5389936319198997066.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/TempSuite5389936319198997066.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/TempSuite1874933644947150351 /tmp/adamTestMvnb0spyFX/TempSuite5053889959651246851 /tmp/adamTestMvnb0spyFX/24778908610177138 /tmp/adamTestMvnb0spyFX/24778908610177138/unordered.sam /tmp/adamTestMvnb0spyFX/24778908610177138/.unordered.sam.crc /tmp/adamTestMvnb0spyFX/TempSuite7485645882337792189.adam /tmp/adamTestMvnb0spyFX/TempSuite7485645882337792189.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite7485645882337792189.adam/part-r-00001.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite7485645882337792189.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite7485645882337792189.adam/part-r-00002.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite7485645882337792189.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite7485645882337792189.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite7485645882337792189.adam/_partitionMap.avro /tmp/adamTestMvnb0spyFX/TempSuite7485645882337792189.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite7485645882337792189.adam/._partitionMap.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite7485645882337792189.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite7485645882337792189.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite7485645882337792189.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite7485645882337792189.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite7485645882337792189.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite7485645882337792189.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite7485645882337792189.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite7485645882337792189.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite7485645882337792189.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite7485645882337792189.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/TempSuite7485645882337792189.adam/part-r-00003.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite7485645882337792189.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/TempSuite7485645882337792189.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite1195215975505903255 /tmp/adamTestMvnb0spyFX/SliceDatasetSuite6852250704612326463.fasta /tmp/adamTestMvnb0spyFX/SliceDatasetSuite6852250704612326463.fasta/.part-00001.crc /tmp/adamTestMvnb0spyFX/SliceDatasetSuite6852250704612326463.fasta/.part-00003.crc /tmp/adamTestMvnb0spyFX/SliceDatasetSuite6852250704612326463.fasta/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/SliceDatasetSuite6852250704612326463.fasta/part-00003 /tmp/adamTestMvnb0spyFX/SliceDatasetSuite6852250704612326463.fasta/.part-00000.crc /tmp/adamTestMvnb0spyFX/SliceDatasetSuite6852250704612326463.fasta/part-00000 /tmp/adamTestMvnb0spyFX/SliceDatasetSuite6852250704612326463.fasta/part-00002 /tmp/adamTestMvnb0spyFX/SliceDatasetSuite6852250704612326463.fasta/_SUCCESS /tmp/adamTestMvnb0spyFX/SliceDatasetSuite6852250704612326463.fasta/part-00001 /tmp/adamTestMvnb0spyFX/SliceDatasetSuite6852250704612326463.fasta/.part-00002.crc /tmp/adamTestMvnb0spyFX/TempSuite3544256723564020077 /tmp/adamTestMvnb0spyFX/8392904735455197048 /tmp/adamTestMvnb0spyFX/8392904735455197048/out.sam_head /tmp/adamTestMvnb0spyFX/8392904735455197048/.out.sam_head.crc /tmp/adamTestMvnb0spyFX/8392904735455197048/out.sam_tail /tmp/adamTestMvnb0spyFX/8392904735455197048/out.sam_tail/part-r-00002.sam /tmp/adamTestMvnb0spyFX/8392904735455197048/out.sam_tail/part-r-00000.sam /tmp/adamTestMvnb0spyFX/8392904735455197048/out.sam_tail/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/8392904735455197048/out.sam_tail/_SUCCESS /tmp/adamTestMvnb0spyFX/8392904735455197048/out.sam_tail/.part-r-00000.sam.crc /tmp/adamTestMvnb0spyFX/8392904735455197048/out.sam_tail/part-r-00003.sam /tmp/adamTestMvnb0spyFX/8392904735455197048/out.sam_tail/.part-r-00002.sam.crc /tmp/adamTestMvnb0spyFX/8392904735455197048/out.sam_tail/.part-r-00001.sam.crc /tmp/adamTestMvnb0spyFX/8392904735455197048/out.sam_tail/part-r-00001.sam /tmp/adamTestMvnb0spyFX/8392904735455197048/out.sam_tail/.part-r-00003.sam.crc /tmp/adamTestMvnb0spyFX/8392904735455197048/.out.sam.crc /tmp/adamTestMvnb0spyFX/8392904735455197048/out.sam /tmp/adamTestMvnb0spyFX/SliceDatasetSuite4831159868188361918 /tmp/adamTestMvnb0spyFX/TempSuite5273812807202368426 /tmp/adamTestMvnb0spyFX/TempSuite3908327096057064305.adam /tmp/adamTestMvnb0spyFX/TempSuite3908327096057064305.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite3908327096057064305.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite3908327096057064305.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite3908327096057064305.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite3908327096057064305.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite3908327096057064305.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite3908327096057064305.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite3908327096057064305.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite3908327096057064305.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite3908327096057064305.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite3908327096057064305.adam/_header /tmp/adamTestMvnb0spyFX/TempSuite3908327096057064305.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/ReadDatasetSuite3626990993401898484.fastq /tmp/adamTestMvnb0spyFX/TempSuite1487337381710504194.adam /tmp/adamTestMvnb0spyFX/TempSuite1487337381710504194.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite1487337381710504194.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite1487337381710504194.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite1487337381710504194.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite1487337381710504194.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite1487337381710504194.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite1487337381710504194.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite1487337381710504194.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite1487337381710504194.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite1487337381710504194.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite1487337381710504194.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite1487337381710504194.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/TempSuite1487337381710504194.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/TempSuite1487337381710504194.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite9049664041555074834.bed /tmp/adamTestMvnb0spyFX/TempSuite9049664041555074834.bed/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite9049664041555074834.bed/.part-00000.crc /tmp/adamTestMvnb0spyFX/TempSuite9049664041555074834.bed/part-00000 /tmp/adamTestMvnb0spyFX/TempSuite9049664041555074834.bed/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite5407825697586342794.bed /tmp/adamTestMvnb0spyFX/TempSuite5407825697586342794.bed/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite5407825697586342794.bed/.part-00000.crc /tmp/adamTestMvnb0spyFX/TempSuite5407825697586342794.bed/part-00000 /tmp/adamTestMvnb0spyFX/TempSuite5407825697586342794.bed/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite6061207191134941194.adam /tmp/adamTestMvnb0spyFX/TempSuite6061207191134941194.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite6061207191134941194.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite6061207191134941194.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite6061207191134941194.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite6061207191134941194.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite6061207191134941194.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite6061207191134941194.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite6061207191134941194.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite6061207191134941194.adam/_samples.avro /tmp/adamTestMvnb0spyFX/TempSuite6061207191134941194.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite6061207191134941194.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite6061207191134941194.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite6061207191134941194.adam/_header /tmp/adamTestMvnb0spyFX/TempSuite6061207191134941194.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite7861068334412091649.sam /tmp/adamTestMvnb0spyFX/TempSuite7861068334412091649.sam/part-r-00000.sam /tmp/adamTestMvnb0spyFX/TempSuite7861068334412091649.sam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite7861068334412091649.sam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite7861068334412091649.sam/.part-r-00000.sam.crc /tmp/adamTestMvnb0spyFX/TempSuite218921967155764417.bed /tmp/adamTestMvnb0spyFX/TempSuite218921967155764417.bed/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite218921967155764417.bed/.part-00000.crc /tmp/adamTestMvnb0spyFX/TempSuite218921967155764417.bed/part-00000 /tmp/adamTestMvnb0spyFX/TempSuite218921967155764417.bed/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite8017101356362029278 /tmp/adamTestMvnb0spyFX/TempSuite9159259455274833258.fa /tmp/adamTestMvnb0spyFX/TempSuite9159259455274833258.fa/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite9159259455274833258.fa/.part-00000.crc /tmp/adamTestMvnb0spyFX/TempSuite9159259455274833258.fa/part-00000 /tmp/adamTestMvnb0spyFX/TempSuite9159259455274833258.fa/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite4715374937079385315 /tmp/adamTestMvnb0spyFX/TempSuite2983626938439122107 /tmp/adamTestMvnb0spyFX/TempSuite1725050779661907119 /tmp/adamTestMvnb0spyFX/TempSuite4369837683374781639.adam /tmp/adamTestMvnb0spyFX/TempSuite4369837683374781639.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite4369837683374781639.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite4369837683374781639.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite4369837683374781639.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite4369837683374781639.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite4369837683374781639.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite4369837683374781639.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite4369837683374781639.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite4369837683374781639.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite4369837683374781639.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite4369837683374781639.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite4369837683374781639.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/TempSuite4369837683374781639.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/TempSuite4369837683374781639.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/random.vcf768046151818870033.vcf /tmp/adamTestMvnb0spyFX/TempSuite6120355796070605567 /tmp/adamTestMvnb0spyFX/TempSuite3613047783284231283.fa /tmp/adamTestMvnb0spyFX/TempSuite3613047783284231283.fa/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite3613047783284231283.fa/.part-00000.crc /tmp/adamTestMvnb0spyFX/TempSuite3613047783284231283.fa/part-00000 /tmp/adamTestMvnb0spyFX/TempSuite3613047783284231283.fa/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite4715374937079385315.adam /tmp/adamTestMvnb0spyFX/TempSuite4715374937079385315.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite4715374937079385315.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite4715374937079385315.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite4715374937079385315.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite4715374937079385315.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite4715374937079385315.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite4715374937079385315.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite4715374937079385315.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite4715374937079385315.adam/_samples.avro /tmp/adamTestMvnb0spyFX/TempSuite4715374937079385315.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite4715374937079385315.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite4715374937079385315.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite4715374937079385315.adam/_header /tmp/adamTestMvnb0spyFX/TempSuite4715374937079385315.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite7928552740733070057 /tmp/adamTestMvnb0spyFX/1379659784168150070 /tmp/adamTestMvnb0spyFX/1379659784168150070/sorted.sam /tmp/adamTestMvnb0spyFX/1379659784168150070/.sorted.sam.crc /tmp/adamTestMvnb0spyFX/TempSuite5815205274219032792.adam /tmp/adamTestMvnb0spyFX/TempSuite5815205274219032792.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite5815205274219032792.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite5815205274219032792.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite5815205274219032792.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite5815205274219032792.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite5815205274219032792.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite5815205274219032792.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite5815205274219032792.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite5815205274219032792.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite5815205274219032792.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite5815205274219032792.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite5815205274219032792.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/TempSuite5815205274219032792.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/TempSuite5815205274219032792.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite2958805603867747573.adam /tmp/adamTestMvnb0spyFX/TempSuite2958805603867747573.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite2958805603867747573.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite2958805603867747573.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite2958805603867747573.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite2958805603867747573.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite2958805603867747573.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite2958805603867747573.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite2958805603867747573.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite2958805603867747573.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite2958805603867747573.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite2958805603867747573.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite2958805603867747573.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/TempSuite2958805603867747573.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/TempSuite2958805603867747573.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite6190047274301218014_2.fq /tmp/adamTestMvnb0spyFX/TempSuite6190047274301218014_2.fq/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite6190047274301218014_2.fq/.part-00000.crc /tmp/adamTestMvnb0spyFX/TempSuite6190047274301218014_2.fq/part-00000 /tmp/adamTestMvnb0spyFX/TempSuite6190047274301218014_2.fq/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite7360580403562375620.sam /tmp/adamTestMvnb0spyFX/TempSuite7360580403562375620.sam/part-r-00000.sam /tmp/adamTestMvnb0spyFX/TempSuite7360580403562375620.sam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite7360580403562375620.sam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite7360580403562375620.sam/.part-r-00000.sam.crc /tmp/adamTestMvnb0spyFX/small.sam22796905739733617.sam /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite2121434685766622262.gff3 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite2121434685766622262.gff3/.part-00001.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite2121434685766622262.gff3/.part-00003.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite2121434685766622262.gff3/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite2121434685766622262.gff3/part-00003 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite2121434685766622262.gff3/.part-00000.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite2121434685766622262.gff3/part-00000 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite2121434685766622262.gff3/part-00002 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite2121434685766622262.gff3/_SUCCESS /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite2121434685766622262.gff3/part-00001 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite2121434685766622262.gff3/.part-00002.crc /tmp/adamTestMvnb0spyFX/TempSuite8795065465128897046.adam /tmp/adamTestMvnb0spyFX/TempSuite8795065465128897046.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite8795065465128897046.adam/part-r-00001.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite8795065465128897046.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite8795065465128897046.adam/part-r-00002.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite8795065465128897046.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite8795065465128897046.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite8795065465128897046.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite8795065465128897046.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite8795065465128897046.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite8795065465128897046.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite8795065465128897046.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite8795065465128897046.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite8795065465128897046.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite8795065465128897046.adam/_samples.avro /tmp/adamTestMvnb0spyFX/TempSuite8795065465128897046.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite8795065465128897046.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite8795065465128897046.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite8795065465128897046.adam/part-r-00003.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite8795065465128897046.adam/_header /tmp/adamTestMvnb0spyFX/TempSuite8795065465128897046.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite4120131135799049214.adam /tmp/adamTestMvnb0spyFX/TempSuite4120131135799049214.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite4120131135799049214.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite4120131135799049214.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite4120131135799049214.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite4120131135799049214.adam/_samples.avro /tmp/adamTestMvnb0spyFX/TempSuite4120131135799049214.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite4120131135799049214.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite4120131135799049214.adam/part-00000-4463a311-26d2-4a8d-95ef-9d73f749a7b8-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite4120131135799049214.adam/_header /tmp/adamTestMvnb0spyFX/TempSuite4120131135799049214.adam/.part-00000-4463a311-26d2-4a8d-95ef-9d73f749a7b8-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite9102691510130872758.adam /tmp/adamTestMvnb0spyFX/TempSuite9102691510130872758.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite9102691510130872758.adam/part-r-00001.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite9102691510130872758.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite9102691510130872758.adam/part-r-00002.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite9102691510130872758.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite9102691510130872758.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite9102691510130872758.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite9102691510130872758.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite9102691510130872758.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite9102691510130872758.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite9102691510130872758.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite9102691510130872758.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite9102691510130872758.adam/_samples.avro /tmp/adamTestMvnb0spyFX/TempSuite9102691510130872758.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite9102691510130872758.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite9102691510130872758.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite9102691510130872758.adam/part-r-00003.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite9102691510130872758.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/noqual6310526552048058223 /tmp/adamTestMvnb0spyFX/noqual6310526552048058223/noqualB.fastq /tmp/adamTestMvnb0spyFX/noqual6310526552048058223/noqualB.fastq/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/noqual6310526552048058223/noqualB.fastq/.part-00000.crc /tmp/adamTestMvnb0spyFX/noqual6310526552048058223/noqualB.fastq/part-00000 /tmp/adamTestMvnb0spyFX/noqual6310526552048058223/noqualB.fastq/_SUCCESS /tmp/adamTestMvnb0spyFX/noqual6310526552048058223/noqualA.sam /tmp/adamTestMvnb0spyFX/noqual6310526552048058223/noqualA.sam/part-r-00000.sam /tmp/adamTestMvnb0spyFX/noqual6310526552048058223/noqualA.sam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/noqual6310526552048058223/noqualA.sam/_SUCCESS /tmp/adamTestMvnb0spyFX/noqual6310526552048058223/noqualA.sam/.part-r-00000.sam.crc /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite8643964769749338715.adam /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite8643964769749338715.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite8643964769749338715.adam/part-r-00001.gz.parquet /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite8643964769749338715.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite8643964769749338715.adam/part-r-00002.gz.parquet /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite8643964769749338715.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite8643964769749338715.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite8643964769749338715.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite8643964769749338715.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite8643964769749338715.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite8643964769749338715.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite8643964769749338715.adam/_metadata /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite8643964769749338715.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite8643964769749338715.adam/_common_metadata /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite8643964769749338715.adam/_references.avro /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite8643964769749338715.adam/part-r-00003.gz.parquet /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite8643964769749338715.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite4714530468072788475 /tmp/adamTestMvnb0spyFX/TempSuite60737275529428666 /tmp/adamTestMvnb0spyFX/TempSuite2208012339950217447 /tmp/adamTestMvnb0spyFX/5586479542335312460 /tmp/adamTestMvnb0spyFX/5586479542335312460/predicate.3.adam /tmp/adamTestMvnb0spyFX/5586479542335312460/predicate.3.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/5586479542335312460/predicate.3.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/5586479542335312460/predicate.3.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/5586479542335312460/predicate.3.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/5586479542335312460/predicate.3.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/5586479542335312460/predicate.3.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/5586479542335312460/predicate.3.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/5586479542335312460/predicate.3.adam/_metadata /tmp/adamTestMvnb0spyFX/5586479542335312460/predicate.3.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/5586479542335312460/predicate.3.adam/_common_metadata /tmp/adamTestMvnb0spyFX/5586479542335312460/predicate.3.adam/_references.avro /tmp/adamTestMvnb0spyFX/5586479542335312460/predicate.3.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/5586479542335312460/predicate.3.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/5586479542335312460/predicate.3.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/5398343253438872237 /tmp/adamTestMvnb0spyFX/5398343253438872237/.small.vcf.bgz.crc /tmp/adamTestMvnb0spyFX/5398343253438872237/small.vcf.bgz /tmp/adamTestMvnb0spyFX/TempSuite2791788290508283336 /tmp/adamTestMvnb0spyFX/TempSuite7309803663058985174reads12.sam /tmp/adamTestMvnb0spyFX/SliceDatasetSuite4464920764036357503.adam /tmp/adamTestMvnb0spyFX/SliceDatasetSuite4464920764036357503.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnb0spyFX/SliceDatasetSuite4464920764036357503.adam/part-r-00001.gz.parquet /tmp/adamTestMvnb0spyFX/SliceDatasetSuite4464920764036357503.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/SliceDatasetSuite4464920764036357503.adam/part-r-00002.gz.parquet /tmp/adamTestMvnb0spyFX/SliceDatasetSuite4464920764036357503.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/SliceDatasetSuite4464920764036357503.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/SliceDatasetSuite4464920764036357503.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/SliceDatasetSuite4464920764036357503.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/SliceDatasetSuite4464920764036357503.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/SliceDatasetSuite4464920764036357503.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnb0spyFX/SliceDatasetSuite4464920764036357503.adam/_metadata /tmp/adamTestMvnb0spyFX/SliceDatasetSuite4464920764036357503.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnb0spyFX/SliceDatasetSuite4464920764036357503.adam/_common_metadata /tmp/adamTestMvnb0spyFX/SliceDatasetSuite4464920764036357503.adam/_references.avro /tmp/adamTestMvnb0spyFX/SliceDatasetSuite4464920764036357503.adam/part-r-00003.gz.parquet /tmp/adamTestMvnb0spyFX/SliceDatasetSuite4464920764036357503.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite152520522698424516.adam /tmp/adamTestMvnb0spyFX/TempSuite152520522698424516.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite152520522698424516.adam/part-r-00001.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite152520522698424516.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite152520522698424516.adam/part-r-00002.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite152520522698424516.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite152520522698424516.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite152520522698424516.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite152520522698424516.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite152520522698424516.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite152520522698424516.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite152520522698424516.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite152520522698424516.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite152520522698424516.adam/_samples.avro /tmp/adamTestMvnb0spyFX/TempSuite152520522698424516.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite152520522698424516.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite152520522698424516.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite152520522698424516.adam/part-r-00003.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite152520522698424516.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite8069595094360631386.adam /tmp/adamTestMvnb0spyFX/TempSuite8069595094360631386.adam/.part-00000-294f7363-f645-4146-a26a-a15957315edc-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite8069595094360631386.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite8069595094360631386.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite8069595094360631386.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite8069595094360631386.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite8069595094360631386.adam/part-00000-294f7363-f645-4146-a26a-a15957315edc-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite8069595094360631386.adam/_samples.avro /tmp/adamTestMvnb0spyFX/TempSuite8069595094360631386.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite8069595094360631386.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite8069595094360631386.adam/_header /tmp/adamTestMvnb0spyFX/TempSuite9176590185492283793 /tmp/adamTestMvnb0spyFX/650349527876913577 /tmp/adamTestMvnb0spyFX/650349527876913577/genotypes.lex.adam /tmp/adamTestMvnb0spyFX/650349527876913577/genotypes.lex.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/650349527876913577/genotypes.lex.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/650349527876913577/genotypes.lex.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/650349527876913577/genotypes.lex.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/650349527876913577/genotypes.lex.adam/._header.crc /tmp/adamTestMvnb0spyFX/650349527876913577/genotypes.lex.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/650349527876913577/genotypes.lex.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/650349527876913577/genotypes.lex.adam/_metadata /tmp/adamTestMvnb0spyFX/650349527876913577/genotypes.lex.adam/_samples.avro /tmp/adamTestMvnb0spyFX/650349527876913577/genotypes.lex.adam/_common_metadata /tmp/adamTestMvnb0spyFX/650349527876913577/genotypes.lex.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/650349527876913577/genotypes.lex.adam/_references.avro /tmp/adamTestMvnb0spyFX/650349527876913577/genotypes.lex.adam/_header /tmp/adamTestMvnb0spyFX/650349527876913577/genotypes.lex.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite7253031539701787349 /tmp/adamTestMvnb0spyFX/TempSuite7235286953779246039.adam /tmp/adamTestMvnb0spyFX/TempSuite7235286953779246039.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite7235286953779246039.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite7235286953779246039.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite7235286953779246039.adam/part-00000-db5fbea8-c80f-4bc3-b895-c295efe4288b-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite7235286953779246039.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite7235286953779246039.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite7235286953779246039.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite7235286953779246039.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/TempSuite7235286953779246039.adam/.part-00000-db5fbea8-c80f-4bc3-b895-c295efe4288b-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite7235286953779246039.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/TempSuite2218035754949124385.adam /tmp/adamTestMvnb0spyFX/TempSuite2218035754949124385.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite2218035754949124385.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite2218035754949124385.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite2218035754949124385.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite2218035754949124385.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite2218035754949124385.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite2218035754949124385.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite2218035754949124385.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite2218035754949124385.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite2218035754949124385.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite2218035754949124385.adam/_header /tmp/adamTestMvnb0spyFX/TempSuite2218035754949124385.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite4024925401560411753.interval_list /tmp/adamTestMvnb0spyFX/TempSuite8996282093235212258.adam /tmp/adamTestMvnb0spyFX/TempSuite8996282093235212258.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite8996282093235212258.adam/part-r-00001.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite8996282093235212258.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite8996282093235212258.adam/part-r-00002.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite8996282093235212258.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite8996282093235212258.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite8996282093235212258.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite8996282093235212258.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite8996282093235212258.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite8996282093235212258.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite8996282093235212258.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite8996282093235212258.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite8996282093235212258.adam/_samples.avro /tmp/adamTestMvnb0spyFX/TempSuite8996282093235212258.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite8996282093235212258.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite8996282093235212258.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite8996282093235212258.adam/part-r-00003.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite8996282093235212258.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite8643964769749338715 /tmp/adamTestMvnb0spyFX/TempSuite6063594095213510213 /tmp/adamTestMvnb0spyFX/.FeatureDatasetFunctionsSuite7950550038912313700.gtf.crc /tmp/adamTestMvnb0spyFX/TempSuite13586325318363150 /tmp/adamTestMvnb0spyFX/TempSuite7278097286778956513 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite7652776886456979321.narrowPeak /tmp/adamTestMvnb0spyFX/TempSuite410846537093015666 /tmp/adamTestMvnb0spyFX/1567622935018-0 /tmp/adamTestMvnb0spyFX/1567622935018-0/.test.gvcf.vcf.crc /tmp/adamTestMvnb0spyFX/1567622935018-0/test.gvcf.vcf /tmp/adamTestMvnb0spyFX/TempSuite2313998342944399594 /tmp/adamTestMvnb0spyFX/TempSuite7836803075226739795 /tmp/adamTestMvnb0spyFX/bqsr11921579313701004179 /tmp/adamTestMvnb0spyFX/bqsr11921579313701004179/bqsr1.bam /tmp/adamTestMvnb0spyFX/bqsr11921579313701004179/.bqsr1.bam.crc /tmp/adamTestMvnb0spyFX/TempSuite7481415853226529479 /tmp/adamTestMvnb0spyFX/.FeatureDatasetFunctionsSuite1207087682448426647.gff3.crc /tmp/adamTestMvnb0spyFX/javaAC6762752677205324959 /tmp/adamTestMvnb0spyFX/javaAC6762752677205324959/testRdd.coverage.adam /tmp/adamTestMvnb0spyFX/javaAC6762752677205324959/testRdd.coverage.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnb0spyFX/javaAC6762752677205324959/testRdd.coverage.adam/part-r-00001.gz.parquet /tmp/adamTestMvnb0spyFX/javaAC6762752677205324959/testRdd.coverage.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/javaAC6762752677205324959/testRdd.coverage.adam/part-r-00002.gz.parquet /tmp/adamTestMvnb0spyFX/javaAC6762752677205324959/testRdd.coverage.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/javaAC6762752677205324959/testRdd.coverage.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/javaAC6762752677205324959/testRdd.coverage.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/javaAC6762752677205324959/testRdd.coverage.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/javaAC6762752677205324959/testRdd.coverage.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/javaAC6762752677205324959/testRdd.coverage.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnb0spyFX/javaAC6762752677205324959/testRdd.coverage.adam/_metadata /tmp/adamTestMvnb0spyFX/javaAC6762752677205324959/testRdd.coverage.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnb0spyFX/javaAC6762752677205324959/testRdd.coverage.adam/_samples.avro /tmp/adamTestMvnb0spyFX/javaAC6762752677205324959/testRdd.coverage.adam/_common_metadata /tmp/adamTestMvnb0spyFX/javaAC6762752677205324959/testRdd.coverage.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/javaAC6762752677205324959/testRdd.coverage.adam/_references.avro /tmp/adamTestMvnb0spyFX/javaAC6762752677205324959/testRdd.coverage.adam/part-r-00003.gz.parquet /tmp/adamTestMvnb0spyFX/javaAC6762752677205324959/testRdd.coverage.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite2918878102769803537.fa /tmp/adamTestMvnb0spyFX/TempSuite2918878102769803537.fa/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite2918878102769803537.fa/.part-00000.crc /tmp/adamTestMvnb0spyFX/TempSuite2918878102769803537.fa/part-00000 /tmp/adamTestMvnb0spyFX/TempSuite2918878102769803537.fa/_SUCCESS /tmp/adamTestMvnb0spyFX/3474589616310000153 /tmp/adamTestMvnb0spyFX/3474589616310000153/variants.adam /tmp/adamTestMvnb0spyFX/3474589616310000153/variants.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/3474589616310000153/variants.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/3474589616310000153/variants.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/3474589616310000153/variants.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/3474589616310000153/variants.adam/._header.crc /tmp/adamTestMvnb0spyFX/3474589616310000153/variants.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/3474589616310000153/variants.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/3474589616310000153/variants.adam/_metadata /tmp/adamTestMvnb0spyFX/3474589616310000153/variants.adam/_common_metadata /tmp/adamTestMvnb0spyFX/3474589616310000153/variants.adam/_references.avro /tmp/adamTestMvnb0spyFX/3474589616310000153/variants.adam/_header /tmp/adamTestMvnb0spyFX/3474589616310000153/variants.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/5485046281139722351 /tmp/adamTestMvnb0spyFX/5485046281139722351/unordered.sam /tmp/adamTestMvnb0spyFX/5485046281139722351/.unordered.sam.crc /tmp/adamTestMvnb0spyFX/TempSuite3409251235482384259.bed /tmp/adamTestMvnb0spyFX/TempSuite3409251235482384259.bed/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite3409251235482384259.bed/.part-00000.crc /tmp/adamTestMvnb0spyFX/TempSuite3409251235482384259.bed/part-00000 /tmp/adamTestMvnb0spyFX/TempSuite3409251235482384259.bed/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite2373168627588900814.adam /tmp/adamTestMvnb0spyFX/TempSuite2373168627588900814.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite2373168627588900814.adam/.part-00000-28dcc7cf-29be-40eb-a2fa-cc5501d7016a-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite2373168627588900814.adam/part-00000-28dcc7cf-29be-40eb-a2fa-cc5501d7016a-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite2373168627588900814.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite2373168627588900814.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite2373168627588900814.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite2373168627588900814.adam/_samples.avro /tmp/adamTestMvnb0spyFX/TempSuite2373168627588900814.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite2373168627588900814.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite2373168627588900814.adam/_header /tmp/adamTestMvnb0spyFX/TempSuite7235286953779246039 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite2378153506775213732 /tmp/adamTestMvnb0spyFX/TempSuite2454127510220294066 /tmp/adamTestMvnb0spyFX/TempSuite4272960518967836713 /tmp/adamTestMvnb0spyFX/1708401299212873644 /tmp/adamTestMvnb0spyFX/1708401299212873644/binned.adam /tmp/adamTestMvnb0spyFX/1708401299212873644/binned.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/1708401299212873644/binned.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/1708401299212873644/binned.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/1708401299212873644/binned.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/1708401299212873644/binned.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/1708401299212873644/binned.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/1708401299212873644/binned.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/1708401299212873644/binned.adam/_metadata /tmp/adamTestMvnb0spyFX/1708401299212873644/binned.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/1708401299212873644/binned.adam/_common_metadata /tmp/adamTestMvnb0spyFX/1708401299212873644/binned.adam/_references.avro /tmp/adamTestMvnb0spyFX/1708401299212873644/binned.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/1708401299212873644/binned.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/1708401299212873644/binned.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite6606134447898921838.adam /tmp/adamTestMvnb0spyFX/TempSuite6606134447898921838.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite6606134447898921838.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite6606134447898921838.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite6606134447898921838.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite6606134447898921838.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite6606134447898921838.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite6606134447898921838.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite6606134447898921838.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite6606134447898921838.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite6606134447898921838.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite6606134447898921838.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite6606134447898921838.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/TempSuite6606134447898921838.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/TempSuite6606134447898921838.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite7583285953647216540.adam /tmp/adamTestMvnb0spyFX/TempSuite7583285953647216540.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite7583285953647216540.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite7583285953647216540.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite7583285953647216540.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite7583285953647216540.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite7583285953647216540.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite7583285953647216540.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite7583285953647216540.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite7583285953647216540.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite7583285953647216540.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite7583285953647216540.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite7583285953647216540.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/TempSuite7583285953647216540.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/TempSuite7583285953647216540.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite4195308774314905096.gff3 /tmp/adamTestMvnb0spyFX/TempSuite1289404366142158619 /tmp/adamTestMvnb0spyFX/TempSuite2218035754949124385 /tmp/adamTestMvnb0spyFX/875083969356823002 /tmp/adamTestMvnb0spyFX/875083969356823002/.gff3 /tmp/adamTestMvnb0spyFX/875083969356823002/..gff3.crc /tmp/adamTestMvnb0spyFX/3534023091372177443 /tmp/adamTestMvnb0spyFX/3534023091372177443/bqsr1.vcf.bgz /tmp/adamTestMvnb0spyFX/3534023091372177443/bqsr1.vcf.bgz/.part-r-00000.bgz.crc /tmp/adamTestMvnb0spyFX/3534023091372177443/bqsr1.vcf.bgz/.part-r-00003.bgz.crc /tmp/adamTestMvnb0spyFX/3534023091372177443/bqsr1.vcf.bgz/part-r-00000.bgz /tmp/adamTestMvnb0spyFX/3534023091372177443/bqsr1.vcf.bgz/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/3534023091372177443/bqsr1.vcf.bgz/.part-r-00001.bgz.crc /tmp/adamTestMvnb0spyFX/3534023091372177443/bqsr1.vcf.bgz/_SUCCESS /tmp/adamTestMvnb0spyFX/3534023091372177443/bqsr1.vcf.bgz/part-r-00001.bgz /tmp/adamTestMvnb0spyFX/3534023091372177443/bqsr1.vcf.bgz/part-r-00003.bgz /tmp/adamTestMvnb0spyFX/3534023091372177443/bqsr1.vcf.bgz/part-r-00002.bgz /tmp/adamTestMvnb0spyFX/3534023091372177443/bqsr1.vcf.bgz/.part-r-00002.bgz.crc /tmp/adamTestMvnb0spyFX/unordered.sam5635447792792752610.sam /tmp/adamTestMvnb0spyFX/unsorted.sam3237860705606284969.sam /tmp/adamTestMvnb0spyFX/.FeatureDatasetFunctionsSuite5782131563458264716.bed.crc /tmp/adamTestMvnb0spyFX/TempSuite3613047783284231283 /tmp/adamTestMvnb0spyFX/TempSuite389059404325740407 /tmp/adamTestMvnb0spyFX/.TempSuite700548760482694108.sam.crc /tmp/adamTestMvnb0spyFX/TempSuite722922353950353847 /tmp/adamTestMvnb0spyFX/ReadDatasetSuite6821207371022827668 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite5154043713494794883.bed /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite5154043713494794883.bed/.part-00001.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite5154043713494794883.bed/.part-00003.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite5154043713494794883.bed/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite5154043713494794883.bed/part-00003 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite5154043713494794883.bed/.part-00000.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite5154043713494794883.bed/part-00000 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite5154043713494794883.bed/part-00002 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite5154043713494794883.bed/_SUCCESS /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite5154043713494794883.bed/part-00001 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite5154043713494794883.bed/.part-00002.crc /tmp/adamTestMvnb0spyFX/1567623523874-0 /tmp/adamTestMvnb0spyFX/1567623523874-0/bqsr1-r2.fq /tmp/adamTestMvnb0spyFX/1567623523874-0/bqsr1-r2.fq/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/1567623523874-0/bqsr1-r2.fq/.part-00000.crc /tmp/adamTestMvnb0spyFX/1567623523874-0/bqsr1-r2.fq/part-00000 /tmp/adamTestMvnb0spyFX/1567623523874-0/bqsr1-r2.fq/_SUCCESS /tmp/adamTestMvnb0spyFX/1567623523874-0/bqsr1-r1.fq /tmp/adamTestMvnb0spyFX/1567623523874-0/bqsr1-r1.fq/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/1567623523874-0/bqsr1-r1.fq/.part-00000.crc /tmp/adamTestMvnb0spyFX/1567623523874-0/bqsr1-r1.fq/part-00000 /tmp/adamTestMvnb0spyFX/1567623523874-0/bqsr1-r1.fq/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite3422462322184607747.sam /tmp/adamTestMvnb0spyFX/TempSuite3422462322184607747.sam/part-r-00000.sam /tmp/adamTestMvnb0spyFX/TempSuite3422462322184607747.sam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite3422462322184607747.sam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite3422462322184607747.sam/.part-r-00000.sam.crc /tmp/adamTestMvnb0spyFX/ReadDatasetSuite5293798667778524838.adam /tmp/adamTestMvnb0spyFX/ReadDatasetSuite5293798667778524838.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnb0spyFX/ReadDatasetSuite5293798667778524838.adam/part-r-00001.gz.parquet /tmp/adamTestMvnb0spyFX/ReadDatasetSuite5293798667778524838.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/ReadDatasetSuite5293798667778524838.adam/part-r-00002.gz.parquet /tmp/adamTestMvnb0spyFX/ReadDatasetSuite5293798667778524838.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/ReadDatasetSuite5293798667778524838.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/ReadDatasetSuite5293798667778524838.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/ReadDatasetSuite5293798667778524838.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/ReadDatasetSuite5293798667778524838.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/ReadDatasetSuite5293798667778524838.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnb0spyFX/ReadDatasetSuite5293798667778524838.adam/_metadata /tmp/adamTestMvnb0spyFX/ReadDatasetSuite5293798667778524838.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnb0spyFX/ReadDatasetSuite5293798667778524838.adam/_common_metadata /tmp/adamTestMvnb0spyFX/ReadDatasetSuite5293798667778524838.adam/_references.avro /tmp/adamTestMvnb0spyFX/ReadDatasetSuite5293798667778524838.adam/part-r-00003.gz.parquet /tmp/adamTestMvnb0spyFX/ReadDatasetSuite5293798667778524838.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/3700167583265644755 /tmp/adamTestMvnb0spyFX/3700167583265644755/sorted.sam /tmp/adamTestMvnb0spyFX/3700167583265644755/.sorted.sam.crc /tmp/adamTestMvnb0spyFX/javaAC3856017253007063310 /tmp/adamTestMvnb0spyFX/javaAC3856017253007063310/testRdd.variant.adam /tmp/adamTestMvnb0spyFX/javaAC3856017253007063310/testRdd.variant.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/javaAC3856017253007063310/testRdd.variant.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/javaAC3856017253007063310/testRdd.variant.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/javaAC3856017253007063310/testRdd.variant.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/javaAC3856017253007063310/testRdd.variant.adam/._header.crc /tmp/adamTestMvnb0spyFX/javaAC3856017253007063310/testRdd.variant.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/javaAC3856017253007063310/testRdd.variant.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/javaAC3856017253007063310/testRdd.variant.adam/_metadata /tmp/adamTestMvnb0spyFX/javaAC3856017253007063310/testRdd.variant.adam/_common_metadata /tmp/adamTestMvnb0spyFX/javaAC3856017253007063310/testRdd.variant.adam/_references.avro /tmp/adamTestMvnb0spyFX/javaAC3856017253007063310/testRdd.variant.adam/_header /tmp/adamTestMvnb0spyFX/javaAC3856017253007063310/testRdd.variant.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite6596321036827359637 /tmp/adamTestMvnb0spyFX/TempSuite4120131135799049214 /tmp/adamTestMvnb0spyFX/TempSuite517022558576910275 /tmp/adamTestMvnb0spyFX/TempSuite8807936240136141560.bed /tmp/adamTestMvnb0spyFX/TempSuite8807936240136141560.bed/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite8807936240136141560.bed/.part-00000.crc /tmp/adamTestMvnb0spyFX/TempSuite8807936240136141560.bed/part-00000 /tmp/adamTestMvnb0spyFX/TempSuite8807936240136141560.bed/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite6879935168662692333 /tmp/adamTestMvnb0spyFX/TempSuite1677209627376075575 /tmp/adamTestMvnb0spyFX/TempSuite6596321036827359637.adam /tmp/adamTestMvnb0spyFX/TempSuite6596321036827359637.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite6596321036827359637.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite6596321036827359637.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite6596321036827359637.adam/.part-00000-c6a7e524-2c31-48ab-9a49-339ff7b56ce9-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite6596321036827359637.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite6596321036827359637.adam/part-00000-c6a7e524-2c31-48ab-9a49-339ff7b56ce9-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite9176590185492283793.adam /tmp/adamTestMvnb0spyFX/TempSuite9176590185492283793.adam/part-00000-5b31aa29-bb62-41da-b2b4-5751aec3edbe-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite9176590185492283793.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite9176590185492283793.adam/.part-00002-5b31aa29-bb62-41da-b2b4-5751aec3edbe-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite9176590185492283793.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite9176590185492283793.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite9176590185492283793.adam/part-00002-5b31aa29-bb62-41da-b2b4-5751aec3edbe-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite9176590185492283793.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite9176590185492283793.adam/_samples.avro /tmp/adamTestMvnb0spyFX/TempSuite9176590185492283793.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite9176590185492283793.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite9176590185492283793.adam/.part-00001-5b31aa29-bb62-41da-b2b4-5751aec3edbe-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite9176590185492283793.adam/_header /tmp/adamTestMvnb0spyFX/TempSuite9176590185492283793.adam/.part-00000-5b31aa29-bb62-41da-b2b4-5751aec3edbe-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite9176590185492283793.adam/part-00001-5b31aa29-bb62-41da-b2b4-5751aec3edbe-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite6022208563566613211.bed /tmp/adamTestMvnb0spyFX/TempSuite6022208563566613211.bed/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite6022208563566613211.bed/.part-00000.crc /tmp/adamTestMvnb0spyFX/TempSuite6022208563566613211.bed/part-00000 /tmp/adamTestMvnb0spyFX/TempSuite6022208563566613211.bed/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite7755698663894224728 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite3708021435093289745.narrowPeak /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite3708021435093289745.narrowPeak/.part-00001.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite3708021435093289745.narrowPeak/.part-00003.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite3708021435093289745.narrowPeak/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite3708021435093289745.narrowPeak/part-00003 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite3708021435093289745.narrowPeak/.part-00000.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite3708021435093289745.narrowPeak/part-00000 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite3708021435093289745.narrowPeak/part-00002 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite3708021435093289745.narrowPeak/_SUCCESS /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite3708021435093289745.narrowPeak/part-00001 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite3708021435093289745.narrowPeak/.part-00002.crc /tmp/adamTestMvnb0spyFX/7497838897452706620 /tmp/adamTestMvnb0spyFX/7497838897452706620/.readname_sorted.sam.crc /tmp/adamTestMvnb0spyFX/7497838897452706620/readname_sorted.sam /tmp/adamTestMvnb0spyFX/TempSuite5549825207016188261 /tmp/adamTestMvnb0spyFX/TempSuite4462011021348515644 /tmp/adamTestMvnb0spyFX/TempSuite1728665900007286382.adam /tmp/adamTestMvnb0spyFX/TempSuite1728665900007286382.adam/part-00001-41b1fedb-9959-4604-8ba8-e3b69b81458d-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite1728665900007286382.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite1728665900007286382.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite1728665900007286382.adam/.part-00002-41b1fedb-9959-4604-8ba8-e3b69b81458d-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite1728665900007286382.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite1728665900007286382.adam/_samples.avro /tmp/adamTestMvnb0spyFX/TempSuite1728665900007286382.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite1728665900007286382.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite1728665900007286382.adam/.part-00000-41b1fedb-9959-4604-8ba8-e3b69b81458d-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite1728665900007286382.adam/part-00000-41b1fedb-9959-4604-8ba8-e3b69b81458d-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite1728665900007286382.adam/part-00002-41b1fedb-9959-4604-8ba8-e3b69b81458d-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite1728665900007286382.adam/.part-00001-41b1fedb-9959-4604-8ba8-e3b69b81458d-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite6655463725698376340.gtf /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite6655463725698376340.gtf/.part-00001.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite6655463725698376340.gtf/.part-00003.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite6655463725698376340.gtf/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite6655463725698376340.gtf/part-00003 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite6655463725698376340.gtf/.part-00000.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite6655463725698376340.gtf/part-00000 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite6655463725698376340.gtf/part-00002 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite6655463725698376340.gtf/_SUCCESS /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite6655463725698376340.gtf/part-00001 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite6655463725698376340.gtf/.part-00002.crc /tmp/adamTestMvnb0spyFX/TempSuite670901659019026722 /tmp/adamTestMvnb0spyFX/TempSuite3542982071313764933.adam /tmp/adamTestMvnb0spyFX/TempSuite3542982071313764933.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite3542982071313764933.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite3542982071313764933.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite3542982071313764933.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite3542982071313764933.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite3542982071313764933.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite3542982071313764933.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite3542982071313764933.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite3542982071313764933.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite3542982071313764933.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite3542982071313764933.adam/_header /tmp/adamTestMvnb0spyFX/TempSuite3542982071313764933.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite2266578117613848697 /tmp/adamTestMvnb0spyFX/TempSuite7022375763564403954 /tmp/adamTestMvnb0spyFX/TempSuite7906536727337548225 /tmp/adamTestMvnb0spyFX/TempSuite1114322448682573659 /tmp/adamTestMvnb0spyFX/.TempSuite1985776258197734722.sam.crc /tmp/adamTestMvnb0spyFX/TempSuite3187683752715364961 /tmp/adamTestMvnb0spyFX/javaAC4605934864082136639 /tmp/adamTestMvnb0spyFX/javaAC4605934864082136639/testRdd.genotype.adam /tmp/adamTestMvnb0spyFX/javaAC4605934864082136639/testRdd.genotype.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/javaAC4605934864082136639/testRdd.genotype.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/javaAC4605934864082136639/testRdd.genotype.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/javaAC4605934864082136639/testRdd.genotype.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/javaAC4605934864082136639/testRdd.genotype.adam/._header.crc /tmp/adamTestMvnb0spyFX/javaAC4605934864082136639/testRdd.genotype.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/javaAC4605934864082136639/testRdd.genotype.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/javaAC4605934864082136639/testRdd.genotype.adam/_metadata /tmp/adamTestMvnb0spyFX/javaAC4605934864082136639/testRdd.genotype.adam/_samples.avro /tmp/adamTestMvnb0spyFX/javaAC4605934864082136639/testRdd.genotype.adam/_common_metadata /tmp/adamTestMvnb0spyFX/javaAC4605934864082136639/testRdd.genotype.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/javaAC4605934864082136639/testRdd.genotype.adam/_references.avro /tmp/adamTestMvnb0spyFX/javaAC4605934864082136639/testRdd.genotype.adam/_header /tmp/adamTestMvnb0spyFX/javaAC4605934864082136639/testRdd.genotype.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite7309803663058985174reads12.sam_2 /tmp/adamTestMvnb0spyFX/TempSuite6190047274301218014 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite1772560017125603500.narrowPeak /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite1772560017125603500.narrowPeak/.part-00001.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite1772560017125603500.narrowPeak/.part-00003.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite1772560017125603500.narrowPeak/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite1772560017125603500.narrowPeak/part-00003 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite1772560017125603500.narrowPeak/.part-00000.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite1772560017125603500.narrowPeak/part-00000 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite1772560017125603500.narrowPeak/part-00002 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite1772560017125603500.narrowPeak/_SUCCESS /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite1772560017125603500.narrowPeak/part-00001 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite1772560017125603500.narrowPeak/.part-00002.crc /tmp/adamTestMvnb0spyFX/9141322208406921435 /tmp/adamTestMvnb0spyFX/9141322208406921435/unordered.sam /tmp/adamTestMvnb0spyFX/9141322208406921435/.unordered.sam.crc /tmp/adamTestMvnb0spyFX/javaAC5504975474650488796 /tmp/adamTestMvnb0spyFX/javaAC5504975474650488796/testRdd.read.adam /tmp/adamTestMvnb0spyFX/javaAC5504975474650488796/testRdd.read.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/javaAC5504975474650488796/testRdd.read.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/javaAC5504975474650488796/testRdd.read.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/javaAC5504975474650488796/testRdd.read.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/javaAC5504975474650488796/testRdd.read.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/javaAC5504975474650488796/testRdd.read.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/javaAC5504975474650488796/testRdd.read.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/javaAC5504975474650488796/testRdd.read.adam/_metadata /tmp/adamTestMvnb0spyFX/javaAC5504975474650488796/testRdd.read.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/javaAC5504975474650488796/testRdd.read.adam/_common_metadata /tmp/adamTestMvnb0spyFX/javaAC5504975474650488796/testRdd.read.adam/_references.avro /tmp/adamTestMvnb0spyFX/javaAC5504975474650488796/testRdd.read.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/javaAC5504975474650488796/testRdd.read.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/javaAC5504975474650488796/testRdd.read.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite7794966032756997113 /tmp/adamTestMvnb0spyFX/artificial.sam7484881367408165732.sam /tmp/adamTestMvnb0spyFX/TempSuite5003406344904723864.adam /tmp/adamTestMvnb0spyFX/TempSuite5003406344904723864.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite5003406344904723864.adam/part-r-00001.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite5003406344904723864.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite5003406344904723864.adam/part-r-00002.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite5003406344904723864.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite5003406344904723864.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite5003406344904723864.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite5003406344904723864.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite5003406344904723864.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite5003406344904723864.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite5003406344904723864.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite5003406344904723864.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite5003406344904723864.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite5003406344904723864.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite5003406344904723864.adam/part-r-00003.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite5003406344904723864.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/javaAC3306938607142528966 /tmp/adamTestMvnb0spyFX/javaAC3306938607142528966/testRdd.sequences.adam /tmp/adamTestMvnb0spyFX/javaAC3306938607142528966/testRdd.sequences.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/javaAC3306938607142528966/testRdd.sequences.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/javaAC3306938607142528966/testRdd.sequences.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/javaAC3306938607142528966/testRdd.sequences.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/javaAC3306938607142528966/testRdd.sequences.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/javaAC3306938607142528966/testRdd.sequences.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/javaAC3306938607142528966/testRdd.sequences.adam/_metadata /tmp/adamTestMvnb0spyFX/javaAC3306938607142528966/testRdd.sequences.adam/_common_metadata /tmp/adamTestMvnb0spyFX/javaAC3306938607142528966/testRdd.sequences.adam/_references.avro /tmp/adamTestMvnb0spyFX/javaAC3306938607142528966/testRdd.sequences.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite5053889959651246851.adam /tmp/adamTestMvnb0spyFX/TempSuite5053889959651246851.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite5053889959651246851.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite5053889959651246851.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite5053889959651246851.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite5053889959651246851.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite5053889959651246851.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite5053889959651246851.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite5053889959651246851.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite5053889959651246851.adam/_samples.avro /tmp/adamTestMvnb0spyFX/TempSuite5053889959651246851.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite5053889959651246851.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite5053889959651246851.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite5053889959651246851.adam/_header /tmp/adamTestMvnb0spyFX/TempSuite5053889959651246851.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/361080989806141231 /tmp/adamTestMvnb0spyFX/361080989806141231/.unordered.bam.crc /tmp/adamTestMvnb0spyFX/361080989806141231/unordered.bam /tmp/adamTestMvnb0spyFX/unordered.sam5367955334972395234.sam /tmp/adamTestMvnb0spyFX/TempSuite5003406344904723864 /tmp/adamTestMvnb0spyFX/TempSuite5815205274219032792 /tmp/adamTestMvnb0spyFX/TempSuite8659338804758010574 /tmp/adamTestMvnb0spyFX/7664923935101268620 /tmp/adamTestMvnb0spyFX/7664923935101268620/.artificial.cram.crc /tmp/adamTestMvnb0spyFX/7664923935101268620/artificial.cram /tmp/adamTestMvnb0spyFX/TempSuite9159259455274833258 /tmp/adamTestMvnb0spyFX/TempSuite3171600986693125651.adam /tmp/adamTestMvnb0spyFX/TempSuite3171600986693125651.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite3171600986693125651.adam/._partitionedByStartPos.crc /tmp/adamTestMvnb0spyFX/TempSuite3171600986693125651.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite3171600986693125651.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite3171600986693125651.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite3171600986693125651.adam/_samples.avro /tmp/adamTestMvnb0spyFX/TempSuite3171600986693125651.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite3171600986693125651.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite3171600986693125651.adam/referenceName=1 /tmp/adamTestMvnb0spyFX/TempSuite3171600986693125651.adam/referenceName=1/positionBin=0 /tmp/adamTestMvnb0spyFX/TempSuite3171600986693125651.adam/referenceName=1/positionBin=0/.part-00000-8c6a4878-a143-4f7f-8739-6d90ffa0d06d.c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite3171600986693125651.adam/referenceName=1/positionBin=0/part-00000-8c6a4878-a143-4f7f-8739-6d90ffa0d06d.c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite3171600986693125651.adam/_header /tmp/adamTestMvnb0spyFX/TempSuite3171600986693125651.adam/_partitionedByStartPos /tmp/adamTestMvnb0spyFX/TempSuite7913073559000814529.adam /tmp/adamTestMvnb0spyFX/TempSuite7913073559000814529.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite7913073559000814529.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite7913073559000814529.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite7913073559000814529.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite7913073559000814529.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite7913073559000814529.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite7913073559000814529.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite7913073559000814529.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite7913073559000814529.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite7913073559000814529.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite7913073559000814529.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite7913073559000814529.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/TempSuite7913073559000814529.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/TempSuite7913073559000814529.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite8089786077204620879 /tmp/adamTestMvnb0spyFX/506562232293331279 /tmp/adamTestMvnb0spyFX/506562232293331279/sorted.lex.vcf /tmp/adamTestMvnb0spyFX/506562232293331279/.sorted.lex.vcf.crc /tmp/adamTestMvnb0spyFX/.TempSuite7983249371441561085.bam.crc /tmp/adamTestMvnb0spyFX/TempSuite704424410276040594 /tmp/adamTestMvnb0spyFX/TempSuite9036320364156934047 /tmp/adamTestMvnb0spyFX/gencode.v7.annotation.trunc10.bed395499676285793554.v7.annotation.trunc10.bed /tmp/adamTestMvnb0spyFX/reads123630898226584111402 /tmp/adamTestMvnb0spyFX/reads123630898226584111402/reads12.sam /tmp/adamTestMvnb0spyFX/reads123630898226584111402/reads12.sam/part-r-00000.sam /tmp/adamTestMvnb0spyFX/reads123630898226584111402/reads12.sam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/reads123630898226584111402/reads12.sam/_SUCCESS /tmp/adamTestMvnb0spyFX/reads123630898226584111402/reads12.sam/.part-r-00000.sam.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite5782131563458264716.bed /tmp/adamTestMvnb0spyFX/TempSuite7244392612644973173 /tmp/adamTestMvnb0spyFX/TempSuite5506579287596714005.adam /tmp/adamTestMvnb0spyFX/TempSuite5506579287596714005.adam/referenceName=13 /tmp/adamTestMvnb0spyFX/TempSuite5506579287596714005.adam/referenceName=13/positionBin=0 /tmp/adamTestMvnb0spyFX/TempSuite5506579287596714005.adam/referenceName=13/positionBin=0/.part-00000-d0c90f72-dd80-495f-ba6d-f0411ab41ffd.c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite5506579287596714005.adam/referenceName=13/positionBin=0/part-00000-d0c90f72-dd80-495f-ba6d-f0411ab41ffd.c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite5506579287596714005.adam/referenceName=2 /tmp/adamTestMvnb0spyFX/TempSuite5506579287596714005.adam/referenceName=2/positionBin=0 /tmp/adamTestMvnb0spyFX/TempSuite5506579287596714005.adam/referenceName=2/positionBin=0/.part-00000-d0c90f72-dd80-495f-ba6d-f0411ab41ffd.c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite5506579287596714005.adam/referenceName=2/positionBin=0/part-00000-d0c90f72-dd80-495f-ba6d-f0411ab41ffd.c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite5506579287596714005.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite5506579287596714005.adam/._partitionedByStartPos.crc /tmp/adamTestMvnb0spyFX/TempSuite5506579287596714005.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite5506579287596714005.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite5506579287596714005.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite5506579287596714005.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite5506579287596714005.adam/referenceName=1 /tmp/adamTestMvnb0spyFX/TempSuite5506579287596714005.adam/referenceName=1/positionBin=0 /tmp/adamTestMvnb0spyFX/TempSuite5506579287596714005.adam/referenceName=1/positionBin=0/.part-00000-d0c90f72-dd80-495f-ba6d-f0411ab41ffd.c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite5506579287596714005.adam/referenceName=1/positionBin=0/part-00000-d0c90f72-dd80-495f-ba6d-f0411ab41ffd.c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite5506579287596714005.adam/_header /tmp/adamTestMvnb0spyFX/TempSuite5506579287596714005.adam/_partitionedByStartPos /tmp/adamTestMvnb0spyFX/TempSuite1231767842583675175.bam /tmp/adamTestMvnb0spyFX/TempSuite1231767842583675175.bam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite1231767842583675175.bam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite1231767842583675175.bam/.part-r-00000.bam.crc /tmp/adamTestMvnb0spyFX/TempSuite1231767842583675175.bam/part-r-00000.bam /tmp/adamTestMvnb0spyFX/TempSuite3835460560349292744.adam /tmp/adamTestMvnb0spyFX/TempSuite3835460560349292744.adam/.part-00000-11328ff3-3cdf-4208-9503-4bbc559ca488-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite3835460560349292744.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite3835460560349292744.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite3835460560349292744.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite3835460560349292744.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite3835460560349292744.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite3835460560349292744.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite3835460560349292744.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/TempSuite3835460560349292744.adam/part-00000-11328ff3-3cdf-4208-9503-4bbc559ca488-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite3835460560349292744.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/TempSuite1664670996834759004 /tmp/adamTestMvnb0spyFX/reads266946709778739348 /tmp/adamTestMvnb0spyFX/reads266946709778739348/reads2.fq /tmp/adamTestMvnb0spyFX/reads266946709778739348/reads2.fq/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/reads266946709778739348/reads2.fq/.part-00000.crc /tmp/adamTestMvnb0spyFX/reads266946709778739348/reads2.fq/part-00000 /tmp/adamTestMvnb0spyFX/reads266946709778739348/reads2.fq/_SUCCESS /tmp/adamTestMvnb0spyFX/reads266946709778739348/reads1.fq /tmp/adamTestMvnb0spyFX/reads266946709778739348/reads1.fq/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/reads266946709778739348/reads1.fq/.part-00000.crc /tmp/adamTestMvnb0spyFX/reads266946709778739348/reads1.fq/part-00000 /tmp/adamTestMvnb0spyFX/reads266946709778739348/reads1.fq/_SUCCESS /tmp/adamTestMvnb0spyFX/SliceDatasetSuite4128133642973415274.adam /tmp/adamTestMvnb0spyFX/SliceDatasetSuite4128133642973415274.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnb0spyFX/SliceDatasetSuite4128133642973415274.adam/part-r-00001.gz.parquet /tmp/adamTestMvnb0spyFX/SliceDatasetSuite4128133642973415274.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/SliceDatasetSuite4128133642973415274.adam/part-r-00002.gz.parquet /tmp/adamTestMvnb0spyFX/SliceDatasetSuite4128133642973415274.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/SliceDatasetSuite4128133642973415274.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/SliceDatasetSuite4128133642973415274.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/SliceDatasetSuite4128133642973415274.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/SliceDatasetSuite4128133642973415274.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/SliceDatasetSuite4128133642973415274.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnb0spyFX/SliceDatasetSuite4128133642973415274.adam/_metadata /tmp/adamTestMvnb0spyFX/SliceDatasetSuite4128133642973415274.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnb0spyFX/SliceDatasetSuite4128133642973415274.adam/_common_metadata /tmp/adamTestMvnb0spyFX/SliceDatasetSuite4128133642973415274.adam/_references.avro /tmp/adamTestMvnb0spyFX/SliceDatasetSuite4128133642973415274.adam/part-r-00003.gz.parquet /tmp/adamTestMvnb0spyFX/SliceDatasetSuite4128133642973415274.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite3328822851332713981 /tmp/adamTestMvnb0spyFX/TempSuite527259785046505079.adam /tmp/adamTestMvnb0spyFX/TempSuite527259785046505079.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite527259785046505079.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite527259785046505079.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite527259785046505079.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite527259785046505079.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite527259785046505079.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite527259785046505079.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite527259785046505079.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite527259785046505079.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite527259785046505079.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite6096740407961610084.adam /tmp/adamTestMvnb0spyFX/TempSuite6096740407961610084.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite6096740407961610084.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite6096740407961610084.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite6096740407961610084.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite6096740407961610084.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite6096740407961610084.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite6096740407961610084.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite6096740407961610084.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite6096740407961610084.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite6096740407961610084.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite6096740407961610084.adam/_header /tmp/adamTestMvnb0spyFX/TempSuite6096740407961610084.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite5043376504586824352_2.fq /tmp/adamTestMvnb0spyFX/.FeatureDatasetFunctionsSuite5337959601903487058.bed.crc /tmp/adamTestMvnb0spyFX/TempSuite3835460560349292744 /tmp/adamTestMvnb0spyFX/TempSuite1078831768458688653 /tmp/adamTestMvnb0spyFX/5087428040424315217 /tmp/adamTestMvnb0spyFX/5087428040424315217/predicate.3.adam /tmp/adamTestMvnb0spyFX/5087428040424315217/predicate.3.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/5087428040424315217/predicate.3.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/5087428040424315217/predicate.3.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/5087428040424315217/predicate.3.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/5087428040424315217/predicate.3.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/5087428040424315217/predicate.3.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/5087428040424315217/predicate.3.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/5087428040424315217/predicate.3.adam/_metadata /tmp/adamTestMvnb0spyFX/5087428040424315217/predicate.3.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/5087428040424315217/predicate.3.adam/_common_metadata /tmp/adamTestMvnb0spyFX/5087428040424315217/predicate.3.adam/_references.avro /tmp/adamTestMvnb0spyFX/5087428040424315217/predicate.3.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/5087428040424315217/predicate.3.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/5087428040424315217/predicate.3.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/ReadDatasetSuite5800073287503269807.fastq /tmp/adamTestMvnb0spyFX/ReadDatasetSuite5800073287503269807.fastq/.part-00001.crc /tmp/adamTestMvnb0spyFX/ReadDatasetSuite5800073287503269807.fastq/.part-00003.crc /tmp/adamTestMvnb0spyFX/ReadDatasetSuite5800073287503269807.fastq/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/ReadDatasetSuite5800073287503269807.fastq/part-00003 /tmp/adamTestMvnb0spyFX/ReadDatasetSuite5800073287503269807.fastq/.part-00000.crc /tmp/adamTestMvnb0spyFX/ReadDatasetSuite5800073287503269807.fastq/part-00000 /tmp/adamTestMvnb0spyFX/ReadDatasetSuite5800073287503269807.fastq/part-00002 /tmp/adamTestMvnb0spyFX/ReadDatasetSuite5800073287503269807.fastq/_SUCCESS /tmp/adamTestMvnb0spyFX/ReadDatasetSuite5800073287503269807.fastq/part-00001 /tmp/adamTestMvnb0spyFX/ReadDatasetSuite5800073287503269807.fastq/.part-00002.crc /tmp/adamTestMvnb0spyFX/TempSuite5636121691084546473 /tmp/adamTestMvnb0spyFX/8390791217325561527 /tmp/adamTestMvnb0spyFX/8390791217325561527/predicate.2.adam /tmp/adamTestMvnb0spyFX/8390791217325561527/predicate.2.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/8390791217325561527/predicate.2.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/8390791217325561527/predicate.2.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/8390791217325561527/predicate.2.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/8390791217325561527/predicate.2.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/8390791217325561527/predicate.2.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/8390791217325561527/predicate.2.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/8390791217325561527/predicate.2.adam/_metadata /tmp/adamTestMvnb0spyFX/8390791217325561527/predicate.2.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/8390791217325561527/predicate.2.adam/_common_metadata /tmp/adamTestMvnb0spyFX/8390791217325561527/predicate.2.adam/_references.avro /tmp/adamTestMvnb0spyFX/8390791217325561527/predicate.2.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/8390791217325561527/predicate.2.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/8390791217325561527/predicate.2.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite3163272534508345781 /tmp/adamTestMvnb0spyFX/TempSuite6452549729766034423 /tmp/adamTestMvnb0spyFX/TempSuite5351184227448246815 /tmp/adamTestMvnb0spyFX/TempSuite4801614860870049683.2.adam /tmp/adamTestMvnb0spyFX/TempSuite4801614860870049683.2.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite4801614860870049683.2.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite4801614860870049683.2.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite4801614860870049683.2.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite4801614860870049683.2.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite4801614860870049683.2.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite4801614860870049683.2.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite4801614860870049683.2.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite4801614860870049683.2.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite4801614860870049683.2.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite4801614860870049683.2.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite4801614860870049683.2.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/TempSuite4801614860870049683.2.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/TempSuite4801614860870049683.2.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite7836803075226739795.adam /tmp/adamTestMvnb0spyFX/TempSuite7836803075226739795.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite7836803075226739795.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite7836803075226739795.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite7836803075226739795.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite7836803075226739795.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite7836803075226739795.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite7836803075226739795.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite7836803075226739795.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite7836803075226739795.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite7836803075226739795.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite7836803075226739795.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite7836803075226739795.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/TempSuite7836803075226739795.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/TempSuite7836803075226739795.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite1000273988394775960 /tmp/adamTestMvnb0spyFX/sample1.queryname.sam3650804501703998379.queryname.sam /tmp/adamTestMvnb0spyFX/TempSuite2711999007946696172.adam /tmp/adamTestMvnb0spyFX/TempSuite2711999007946696172.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite2711999007946696172.adam/part-r-00001.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite2711999007946696172.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite2711999007946696172.adam/part-r-00004.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite2711999007946696172.adam/part-r-00002.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite2711999007946696172.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite2711999007946696172.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite2711999007946696172.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite2711999007946696172.adam/.part-r-00004.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite2711999007946696172.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite2711999007946696172.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite2711999007946696172.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite2711999007946696172.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite2711999007946696172.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite2711999007946696172.adam/_samples.avro /tmp/adamTestMvnb0spyFX/TempSuite2711999007946696172.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite2711999007946696172.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite2711999007946696172.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite2711999007946696172.adam/part-r-00003.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite2711999007946696172.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/random.vcf7643221101275325233.vcf /tmp/adamTestMvnb0spyFX/TempSuite6392642966626907726.adam /tmp/adamTestMvnb0spyFX/TempSuite6392642966626907726.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite6392642966626907726.adam/.part-00000-f96846d0-22d3-42af-af9d-72185805ec03-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite6392642966626907726.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite6392642966626907726.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite6392642966626907726.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite6392642966626907726.adam/_samples.avro /tmp/adamTestMvnb0spyFX/TempSuite6392642966626907726.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite6392642966626907726.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite6392642966626907726.adam/_header /tmp/adamTestMvnb0spyFX/TempSuite6392642966626907726.adam/part-00000-f96846d0-22d3-42af-af9d-72185805ec03-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite8657050157540749652.bed /tmp/adamTestMvnb0spyFX/TempSuite8657050157540749652.bed/.part-00001.crc /tmp/adamTestMvnb0spyFX/TempSuite8657050157540749652.bed/.part-00003.crc /tmp/adamTestMvnb0spyFX/TempSuite8657050157540749652.bed/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite8657050157540749652.bed/part-00003 /tmp/adamTestMvnb0spyFX/TempSuite8657050157540749652.bed/.part-00000.crc /tmp/adamTestMvnb0spyFX/TempSuite8657050157540749652.bed/part-00000 /tmp/adamTestMvnb0spyFX/TempSuite8657050157540749652.bed/part-00002 /tmp/adamTestMvnb0spyFX/TempSuite8657050157540749652.bed/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite8657050157540749652.bed/part-00001 /tmp/adamTestMvnb0spyFX/TempSuite8657050157540749652.bed/.part-00002.crc /tmp/adamTestMvnb0spyFX/TempSuite3773853887775876415.adam /tmp/adamTestMvnb0spyFX/TempSuite3773853887775876415.adam/part-00002-06db267f-e128-443c-8363-b6277840240d-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite3773853887775876415.adam/.part-00002-06db267f-e128-443c-8363-b6277840240d-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite3773853887775876415.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite3773853887775876415.adam/part-00000-06db267f-e128-443c-8363-b6277840240d-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite3773853887775876415.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite3773853887775876415.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite3773853887775876415.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite3773853887775876415.adam/.part-00001-06db267f-e128-443c-8363-b6277840240d-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite3773853887775876415.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite3773853887775876415.adam/part-00001-06db267f-e128-443c-8363-b6277840240d-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite3773853887775876415.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite3773853887775876415.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/TempSuite3773853887775876415.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/TempSuite3773853887775876415.adam/.part-00000-06db267f-e128-443c-8363-b6277840240d-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite2845671519482384446 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite6655463725698376340 /tmp/adamTestMvnb0spyFX/TempSuite2298505133131109902 /tmp/adamTestMvnb0spyFX/TempSuite2417503168442794278 /tmp/adamTestMvnb0spyFX/TempSuite5069529387952670805 /tmp/adamTestMvnb0spyFX/TempSuite5451195398422145575 /tmp/adamTestMvnb0spyFX/TempSuite1728665900007286382 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite1029819534791571898 /tmp/adamTestMvnb0spyFX/TempSuite4272960518967836713.adam /tmp/adamTestMvnb0spyFX/TempSuite4272960518967836713.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite4272960518967836713.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite4272960518967836713.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite4272960518967836713.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite4272960518967836713.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite4272960518967836713.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite4272960518967836713.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite4272960518967836713.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite4272960518967836713.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite4272960518967836713.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite4272960518967836713.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite4272960518967836713.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/TempSuite4272960518967836713.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/TempSuite4272960518967836713.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite1009651091727369744 /tmp/adamTestMvnb0spyFX/SliceDatasetSuite8684065245750119891.fasta /tmp/adamTestMvnb0spyFX/SliceDatasetSuite8684065245750119891.fasta/.part-00001.crc /tmp/adamTestMvnb0spyFX/SliceDatasetSuite8684065245750119891.fasta/.part-00003.crc /tmp/adamTestMvnb0spyFX/SliceDatasetSuite8684065245750119891.fasta/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/SliceDatasetSuite8684065245750119891.fasta/part-00003 /tmp/adamTestMvnb0spyFX/SliceDatasetSuite8684065245750119891.fasta/.part-00000.crc /tmp/adamTestMvnb0spyFX/SliceDatasetSuite8684065245750119891.fasta/part-00000 /tmp/adamTestMvnb0spyFX/SliceDatasetSuite8684065245750119891.fasta/part-00002 /tmp/adamTestMvnb0spyFX/SliceDatasetSuite8684065245750119891.fasta/_SUCCESS /tmp/adamTestMvnb0spyFX/SliceDatasetSuite8684065245750119891.fasta/part-00001 /tmp/adamTestMvnb0spyFX/SliceDatasetSuite8684065245750119891.fasta/.part-00002.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite7803369312697842486.gtf /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite7803369312697842486.gtf/.part-00001.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite7803369312697842486.gtf/.part-00003.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite7803369312697842486.gtf/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite7803369312697842486.gtf/part-00003 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite7803369312697842486.gtf/.part-00000.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite7803369312697842486.gtf/part-00000 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite7803369312697842486.gtf/part-00002 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite7803369312697842486.gtf/_SUCCESS /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite7803369312697842486.gtf/part-00001 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite7803369312697842486.gtf/.part-00002.crc /tmp/adamTestMvnb0spyFX/TempSuite218345194067302476 /tmp/adamTestMvnb0spyFX/random.vcf859120014478702514.vcf /tmp/adamTestMvnb0spyFX/TempSuite41714179832420415 /tmp/adamTestMvnb0spyFX/TempSuite762581844380445957 /tmp/adamTestMvnb0spyFX/TempSuite4714530468072788475.bed /tmp/adamTestMvnb0spyFX/TempSuite4714530468072788475.bed/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite4714530468072788475.bed/.part-00000.crc /tmp/adamTestMvnb0spyFX/TempSuite4714530468072788475.bed/part-00000 /tmp/adamTestMvnb0spyFX/TempSuite4714530468072788475.bed/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite8517716001192333448 /tmp/adamTestMvnb0spyFX/TempSuite1000273988394775960.adam /tmp/adamTestMvnb0spyFX/TempSuite1000273988394775960.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite1000273988394775960.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite1000273988394775960.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite1000273988394775960.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite1000273988394775960.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite1000273988394775960.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite1000273988394775960.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite1000273988394775960.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite1000273988394775960.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite1000273988394775960.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite1000273988394775960.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite1000273988394775960.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/TempSuite1000273988394775960.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/TempSuite1000273988394775960.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/javaAC103682180130572161 /tmp/adamTestMvnb0spyFX/javaAC103682180130572161/testRdd.genotype.adam /tmp/adamTestMvnb0spyFX/javaAC103682180130572161/testRdd.genotype.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/javaAC103682180130572161/testRdd.genotype.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/javaAC103682180130572161/testRdd.genotype.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/javaAC103682180130572161/testRdd.genotype.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/javaAC103682180130572161/testRdd.genotype.adam/._header.crc /tmp/adamTestMvnb0spyFX/javaAC103682180130572161/testRdd.genotype.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/javaAC103682180130572161/testRdd.genotype.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/javaAC103682180130572161/testRdd.genotype.adam/_metadata /tmp/adamTestMvnb0spyFX/javaAC103682180130572161/testRdd.genotype.adam/_samples.avro /tmp/adamTestMvnb0spyFX/javaAC103682180130572161/testRdd.genotype.adam/_common_metadata /tmp/adamTestMvnb0spyFX/javaAC103682180130572161/testRdd.genotype.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/javaAC103682180130572161/testRdd.genotype.adam/_references.avro /tmp/adamTestMvnb0spyFX/javaAC103682180130572161/testRdd.genotype.adam/_header /tmp/adamTestMvnb0spyFX/javaAC103682180130572161/testRdd.genotype.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite3118870385670185840 /tmp/adamTestMvnb0spyFX/TempSuite1487337381710504194 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite1614894730279782033 /tmp/adamTestMvnb0spyFX/TempSuite4264829335977565905.adam /tmp/adamTestMvnb0spyFX/TempSuite4264829335977565905.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite4264829335977565905.adam/part-r-00001.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite4264829335977565905.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite4264829335977565905.adam/part-r-00002.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite4264829335977565905.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite4264829335977565905.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite4264829335977565905.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite4264829335977565905.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite4264829335977565905.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite4264829335977565905.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite4264829335977565905.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite4264829335977565905.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite4264829335977565905.adam/_samples.avro /tmp/adamTestMvnb0spyFX/TempSuite4264829335977565905.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite4264829335977565905.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite4264829335977565905.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite4264829335977565905.adam/part-r-00003.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite4264829335977565905.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/small.sam7456403350869725326.sam /tmp/adamTestMvnb0spyFX/SliceDatasetSuite8342876812053830693 /tmp/adamTestMvnb0spyFX/TempSuite1289404366142158619.adam /tmp/adamTestMvnb0spyFX/TempSuite1289404366142158619.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite1289404366142158619.adam/part-r-00001.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite1289404366142158619.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite1289404366142158619.adam/part-r-00002.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite1289404366142158619.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite1289404366142158619.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite1289404366142158619.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite1289404366142158619.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite1289404366142158619.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite1289404366142158619.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite1289404366142158619.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite1289404366142158619.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite1289404366142158619.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite1289404366142158619.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite1289404366142158619.adam/part-r-00003.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite1289404366142158619.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite6596439115828859404.adam /tmp/adamTestMvnb0spyFX/TempSuite6596439115828859404.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite6596439115828859404.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite6596439115828859404.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite6596439115828859404.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite6596439115828859404.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite6596439115828859404.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite6596439115828859404.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite6596439115828859404.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite6596439115828859404.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite6596439115828859404.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite6596439115828859404.adam/_header /tmp/adamTestMvnb0spyFX/TempSuite6596439115828859404.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite3826754276881373197 /tmp/adamTestMvnb0spyFX/1781184379417912914 /tmp/adamTestMvnb0spyFX/1781184379417912914/.artificial.cram.crc /tmp/adamTestMvnb0spyFX/1781184379417912914/artificial.cram /tmp/adamTestMvnb0spyFX/TempSuite4912730694200123305 /tmp/adamTestMvnb0spyFX/TempSuite3659890415246357886.adam /tmp/adamTestMvnb0spyFX/TempSuite3659890415246357886.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite3659890415246357886.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite3659890415246357886.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite3659890415246357886.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite3659890415246357886.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite3659890415246357886.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite3659890415246357886.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite3659890415246357886.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite3659890415246357886.adam/_samples.avro /tmp/adamTestMvnb0spyFX/TempSuite3659890415246357886.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite3659890415246357886.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite3659890415246357886.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite3659890415246357886.adam/_header /tmp/adamTestMvnb0spyFX/TempSuite3659890415246357886.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/2135680942951670122 /tmp/adamTestMvnb0spyFX/2135680942951670122/bqsr1.vcf.bgz /tmp/adamTestMvnb0spyFX/2135680942951670122/bqsr1.vcf.bgz/.part-r-00000.bgz.crc /tmp/adamTestMvnb0spyFX/2135680942951670122/bqsr1.vcf.bgz/.part-r-00003.bgz.crc /tmp/adamTestMvnb0spyFX/2135680942951670122/bqsr1.vcf.bgz/part-r-00000.bgz /tmp/adamTestMvnb0spyFX/2135680942951670122/bqsr1.vcf.bgz/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/2135680942951670122/bqsr1.vcf.bgz/.part-r-00001.bgz.crc /tmp/adamTestMvnb0spyFX/2135680942951670122/bqsr1.vcf.bgz/_SUCCESS /tmp/adamTestMvnb0spyFX/2135680942951670122/bqsr1.vcf.bgz/part-r-00001.bgz /tmp/adamTestMvnb0spyFX/2135680942951670122/bqsr1.vcf.bgz/part-r-00003.bgz /tmp/adamTestMvnb0spyFX/2135680942951670122/bqsr1.vcf.bgz/part-r-00002.bgz /tmp/adamTestMvnb0spyFX/2135680942951670122/bqsr1.vcf.bgz/.part-r-00002.bgz.crc /tmp/adamTestMvnb0spyFX/TempSuite4048919289480877947.adam /tmp/adamTestMvnb0spyFX/TempSuite4048919289480877947.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite4048919289480877947.adam/part-r-00001.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite4048919289480877947.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite4048919289480877947.adam/part-r-00002.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite4048919289480877947.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite4048919289480877947.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite4048919289480877947.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite4048919289480877947.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite4048919289480877947.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite4048919289480877947.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite4048919289480877947.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite4048919289480877947.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite4048919289480877947.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite4048919289480877947.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite4048919289480877947.adam/part-r-00003.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite4048919289480877947.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite5423322192910015653 /tmp/adamTestMvnb0spyFX/unordered.sam1823731112522244315.sam /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite5894452762882457097 /tmp/adamTestMvnb0spyFX/TempSuite2447934520293824200.adam /tmp/adamTestMvnb0spyFX/TempSuite2447934520293824200.adam/part-00000-378efd2d-e5fd-4973-acfb-cd22c36bb638-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite2447934520293824200.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite2447934520293824200.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite2447934520293824200.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite2447934520293824200.adam/.part-00000-378efd2d-e5fd-4973-acfb-cd22c36bb638-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite2447934520293824200.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite2447934520293824200.adam/_samples.avro /tmp/adamTestMvnb0spyFX/TempSuite2447934520293824200.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite2447934520293824200.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite2447934520293824200.adam/_header /tmp/adamTestMvnb0spyFX/TempSuite2958805603867747573 /tmp/adamTestMvnb0spyFX/reads6306328551318557333 /tmp/adamTestMvnb0spyFX/reads6306328551318557333/reads2.fq /tmp/adamTestMvnb0spyFX/reads6306328551318557333/reads2.fq/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/reads6306328551318557333/reads2.fq/.part-00000.crc /tmp/adamTestMvnb0spyFX/reads6306328551318557333/reads2.fq/part-00000 /tmp/adamTestMvnb0spyFX/reads6306328551318557333/reads2.fq/_SUCCESS /tmp/adamTestMvnb0spyFX/reads6306328551318557333/reads1.fq /tmp/adamTestMvnb0spyFX/reads6306328551318557333/reads1.fq/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/reads6306328551318557333/reads1.fq/.part-00000.crc /tmp/adamTestMvnb0spyFX/reads6306328551318557333/reads1.fq/part-00000 /tmp/adamTestMvnb0spyFX/reads6306328551318557333/reads1.fq/_SUCCESS /tmp/adamTestMvnb0spyFX/unordered.sam5473218379059701528.sam /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite6555175448011988308 /tmp/adamTestMvnb0spyFX/TempSuite2791788290508283336_1.fq /tmp/adamTestMvnb0spyFX/7463736366570833175 /tmp/adamTestMvnb0spyFX/7463736366570833175/artificial.cram /tmp/adamTestMvnb0spyFX/7463736366570833175/artificial.cram/part-r-00000.cram /tmp/adamTestMvnb0spyFX/7463736366570833175/artificial.cram/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/7463736366570833175/artificial.cram/_SUCCESS /tmp/adamTestMvnb0spyFX/7463736366570833175/artificial.cram/.part-r-00000.cram.crc /tmp/adamTestMvnb0spyFX/TempSuite7928552740733070057.adam /tmp/adamTestMvnb0spyFX/TempSuite7928552740733070057.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite7928552740733070057.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite7928552740733070057.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite7928552740733070057.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite7928552740733070057.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite7928552740733070057.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite7928552740733070057.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite7928552740733070057.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite7928552740733070057.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite7928552740733070057.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite7928552740733070057.adam/_header /tmp/adamTestMvnb0spyFX/TempSuite7928552740733070057.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite2474023075788749203.adam /tmp/adamTestMvnb0spyFX/TempSuite2474023075788749203.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite2474023075788749203.adam/._partitionedByStartPos.crc /tmp/adamTestMvnb0spyFX/TempSuite2474023075788749203.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite2474023075788749203.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite2474023075788749203.adam/_samples.avro /tmp/adamTestMvnb0spyFX/TempSuite2474023075788749203.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite2474023075788749203.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite2474023075788749203.adam/referenceName=1 /tmp/adamTestMvnb0spyFX/TempSuite2474023075788749203.adam/referenceName=1/positionBin=14 /tmp/adamTestMvnb0spyFX/TempSuite2474023075788749203.adam/referenceName=1/positionBin=14/.part-00000-9f105903-30c8-4217-b9cb-53a12d38a7bd.c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite2474023075788749203.adam/referenceName=1/positionBin=14/part-00000-9f105903-30c8-4217-b9cb-53a12d38a7bd.c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite2474023075788749203.adam/referenceName=1/positionBin=169 /tmp/adamTestMvnb0spyFX/TempSuite2474023075788749203.adam/referenceName=1/positionBin=169/.part-00001-9f105903-30c8-4217-b9cb-53a12d38a7bd.c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite2474023075788749203.adam/referenceName=1/positionBin=169/part-00001-9f105903-30c8-4217-b9cb-53a12d38a7bd.c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite2474023075788749203.adam/referenceName=1/positionBin=240 /tmp/adamTestMvnb0spyFX/TempSuite2474023075788749203.adam/referenceName=1/positionBin=240/part-00002-9f105903-30c8-4217-b9cb-53a12d38a7bd.c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite2474023075788749203.adam/referenceName=1/positionBin=240/.part-00002-9f105903-30c8-4217-b9cb-53a12d38a7bd.c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite2474023075788749203.adam/referenceName=1/positionBin=0 /tmp/adamTestMvnb0spyFX/TempSuite2474023075788749203.adam/referenceName=1/positionBin=0/.part-00000-9f105903-30c8-4217-b9cb-53a12d38a7bd.c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite2474023075788749203.adam/referenceName=1/positionBin=0/part-00000-9f105903-30c8-4217-b9cb-53a12d38a7bd.c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite2474023075788749203.adam/_partitionedByStartPos /tmp/adamTestMvnb0spyFX/TempSuite7068470766434123610.adam /tmp/adamTestMvnb0spyFX/TempSuite7068470766434123610.adam/part-00000-6392dd59-c4ba-422c-a58c-a1b788331ec4-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite7068470766434123610.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite7068470766434123610.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite7068470766434123610.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite7068470766434123610.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite7068470766434123610.adam/_samples.avro /tmp/adamTestMvnb0spyFX/TempSuite7068470766434123610.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite7068470766434123610.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite7068470766434123610.adam/.part-00000-6392dd59-c4ba-422c-a58c-a1b788331ec4-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite7068470766434123610.adam/_header /tmp/adamTestMvnb0spyFX/TempSuite4021980693717722205.adam /tmp/adamTestMvnb0spyFX/TempSuite4021980693717722205.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite4021980693717722205.adam/part-r-00001.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite4021980693717722205.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite4021980693717722205.adam/part-r-00002.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite4021980693717722205.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite4021980693717722205.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite4021980693717722205.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite4021980693717722205.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite4021980693717722205.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite4021980693717722205.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite4021980693717722205.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite4021980693717722205.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite4021980693717722205.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite4021980693717722205.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite4021980693717722205.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite4021980693717722205.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite4021980693717722205.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/TempSuite4021980693717722205.adam/part-r-00003.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite4021980693717722205.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/TempSuite4021980693717722205.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite6063594095213510213.adam /tmp/adamTestMvnb0spyFX/TempSuite6063594095213510213.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite6063594095213510213.adam/._partitionedByStartPos.crc /tmp/adamTestMvnb0spyFX/TempSuite6063594095213510213.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite6063594095213510213.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite6063594095213510213.adam/_samples.avro /tmp/adamTestMvnb0spyFX/TempSuite6063594095213510213.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite6063594095213510213.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite6063594095213510213.adam/referenceName=1 /tmp/adamTestMvnb0spyFX/TempSuite6063594095213510213.adam/referenceName=1/positionBin=14 /tmp/adamTestMvnb0spyFX/TempSuite6063594095213510213.adam/referenceName=1/positionBin=14/part-00000-eeda3174-a069-45da-a3a9-e90e21bf7010.c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite6063594095213510213.adam/referenceName=1/positionBin=14/.part-00000-eeda3174-a069-45da-a3a9-e90e21bf7010.c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite6063594095213510213.adam/referenceName=1/positionBin=169 /tmp/adamTestMvnb0spyFX/TempSuite6063594095213510213.adam/referenceName=1/positionBin=169/.part-00001-eeda3174-a069-45da-a3a9-e90e21bf7010.c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite6063594095213510213.adam/referenceName=1/positionBin=169/part-00001-eeda3174-a069-45da-a3a9-e90e21bf7010.c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite6063594095213510213.adam/referenceName=1/positionBin=240 /tmp/adamTestMvnb0spyFX/TempSuite6063594095213510213.adam/referenceName=1/positionBin=240/.part-00002-eeda3174-a069-45da-a3a9-e90e21bf7010.c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite6063594095213510213.adam/referenceName=1/positionBin=240/part-00002-eeda3174-a069-45da-a3a9-e90e21bf7010.c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite6063594095213510213.adam/referenceName=1/positionBin=0 /tmp/adamTestMvnb0spyFX/TempSuite6063594095213510213.adam/referenceName=1/positionBin=0/part-00000-eeda3174-a069-45da-a3a9-e90e21bf7010.c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite6063594095213510213.adam/referenceName=1/positionBin=0/.part-00000-eeda3174-a069-45da-a3a9-e90e21bf7010.c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite6063594095213510213.adam/_partitionedByStartPos /tmp/adamTestMvnb0spyFX/TempSuite8807936240136141560 /tmp/adamTestMvnb0spyFX/5300676995759975193 /tmp/adamTestMvnb0spyFX/5300676995759975193/sorted.vcf /tmp/adamTestMvnb0spyFX/5300676995759975193/.sorted.vcf.crc /tmp/adamTestMvnb0spyFX/TempSuite4704335788886769002 /tmp/adamTestMvnb0spyFX/TempSuite5448328260791874979 /tmp/adamTestMvnb0spyFX/TempSuite2373168627588900814 /tmp/adamTestMvnb0spyFX/TempSuite5325554587606682093 /tmp/adamTestMvnb0spyFX/TempSuite694839562576727495 /tmp/adamTestMvnb0spyFX/TempSuite8244960659193638178.bed /tmp/adamTestMvnb0spyFX/TempSuite8244960659193638178.bed/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite8244960659193638178.bed/.part-00000.crc /tmp/adamTestMvnb0spyFX/TempSuite8244960659193638178.bed/part-00000 /tmp/adamTestMvnb0spyFX/TempSuite8244960659193638178.bed/_SUCCESS /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite6357075162860122331 /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite5522462018435503431.adam /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite5522462018435503431.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite5522462018435503431.adam/part-r-00001.gz.parquet /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite5522462018435503431.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite5522462018435503431.adam/part-r-00002.gz.parquet /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite5522462018435503431.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite5522462018435503431.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite5522462018435503431.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite5522462018435503431.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite5522462018435503431.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite5522462018435503431.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite5522462018435503431.adam/_metadata /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite5522462018435503431.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite5522462018435503431.adam/_common_metadata /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite5522462018435503431.adam/_references.avro /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite5522462018435503431.adam/part-r-00003.gz.parquet /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite5522462018435503431.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite8461944749187514020 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite78092404543370815.narrowPeak /tmp/adamTestMvnb0spyFX/unordered.sam3634600431139003022.sam /tmp/adamTestMvnb0spyFX/.TempSuite2791788290508283336_1.fq.crc /tmp/adamTestMvnb0spyFX/6515272422831774059 /tmp/adamTestMvnb0spyFX/6515272422831774059/unordered.sam /tmp/adamTestMvnb0spyFX/6515272422831774059/.unordered.sam.crc /tmp/adamTestMvnb0spyFX/TempSuite614685694657332289 /tmp/adamTestMvnb0spyFX/TempSuite139192938210163960fragments.adam /tmp/adamTestMvnb0spyFX/TempSuite139192938210163960fragments.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite139192938210163960fragments.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite139192938210163960fragments.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite139192938210163960fragments.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite139192938210163960fragments.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite139192938210163960fragments.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite139192938210163960fragments.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite139192938210163960fragments.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite139192938210163960fragments.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite139192938210163960fragments.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite139192938210163960fragments.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite139192938210163960fragments.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/TempSuite139192938210163960fragments.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/TempSuite139192938210163960fragments.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite4912730694200123305.adam /tmp/adamTestMvnb0spyFX/TempSuite4912730694200123305.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite4912730694200123305.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite4912730694200123305.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite4912730694200123305.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite4912730694200123305.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite4912730694200123305.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite4912730694200123305.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite4912730694200123305.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite4912730694200123305.adam/_samples.avro /tmp/adamTestMvnb0spyFX/TempSuite4912730694200123305.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite4912730694200123305.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite4912730694200123305.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite4912730694200123305.adam/_header /tmp/adamTestMvnb0spyFX/TempSuite4912730694200123305.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite2208012339950217447.fa /tmp/adamTestMvnb0spyFX/TempSuite2208012339950217447.fa/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite2208012339950217447.fa/.part-00000.crc /tmp/adamTestMvnb0spyFX/TempSuite2208012339950217447.fa/part-00000 /tmp/adamTestMvnb0spyFX/TempSuite2208012339950217447.fa/_SUCCESS /tmp/adamTestMvnb0spyFX/javaAC7701065240600848575 /tmp/adamTestMvnb0spyFX/javaAC7701065240600848575/testRdd.feature.adam /tmp/adamTestMvnb0spyFX/javaAC7701065240600848575/testRdd.feature.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnb0spyFX/javaAC7701065240600848575/testRdd.feature.adam/part-r-00001.gz.parquet /tmp/adamTestMvnb0spyFX/javaAC7701065240600848575/testRdd.feature.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/javaAC7701065240600848575/testRdd.feature.adam/part-r-00002.gz.parquet /tmp/adamTestMvnb0spyFX/javaAC7701065240600848575/testRdd.feature.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/javaAC7701065240600848575/testRdd.feature.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/javaAC7701065240600848575/testRdd.feature.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/javaAC7701065240600848575/testRdd.feature.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/javaAC7701065240600848575/testRdd.feature.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/javaAC7701065240600848575/testRdd.feature.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnb0spyFX/javaAC7701065240600848575/testRdd.feature.adam/_metadata /tmp/adamTestMvnb0spyFX/javaAC7701065240600848575/testRdd.feature.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnb0spyFX/javaAC7701065240600848575/testRdd.feature.adam/_samples.avro /tmp/adamTestMvnb0spyFX/javaAC7701065240600848575/testRdd.feature.adam/_common_metadata /tmp/adamTestMvnb0spyFX/javaAC7701065240600848575/testRdd.feature.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/javaAC7701065240600848575/testRdd.feature.adam/_references.avro /tmp/adamTestMvnb0spyFX/javaAC7701065240600848575/testRdd.feature.adam/part-r-00003.gz.parquet /tmp/adamTestMvnb0spyFX/javaAC7701065240600848575/testRdd.feature.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite7360580403562375620 /tmp/adamTestMvnb0spyFX/TempSuite9139646124206219871.adam /tmp/adamTestMvnb0spyFX/TempSuite9139646124206219871.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite9139646124206219871.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite9139646124206219871.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite9139646124206219871.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite9139646124206219871.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite9139646124206219871.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite9139646124206219871.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite9139646124206219871.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite9139646124206219871.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite9139646124206219871.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite9139646124206219871.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite9139646124206219871.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/TempSuite9139646124206219871.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/TempSuite9139646124206219871.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite5540091630789655746 /tmp/adamTestMvnb0spyFX/TempSuite5459740649236423241.adam /tmp/adamTestMvnb0spyFX/TempSuite5459740649236423241.adam/.part-00000-707ffcc9-659e-4d1e-a7d5-d5ea2e3b149b-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite5459740649236423241.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite5459740649236423241.adam/part-00001-707ffcc9-659e-4d1e-a7d5-d5ea2e3b149b-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite5459740649236423241.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite5459740649236423241.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite5459740649236423241.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite5459740649236423241.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite5459740649236423241.adam/.part-00002-707ffcc9-659e-4d1e-a7d5-d5ea2e3b149b-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite5459740649236423241.adam/part-00000-707ffcc9-659e-4d1e-a7d5-d5ea2e3b149b-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite5459740649236423241.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite5459740649236423241.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/TempSuite5459740649236423241.adam/part-00002-707ffcc9-659e-4d1e-a7d5-d5ea2e3b149b-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite5459740649236423241.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/TempSuite5459740649236423241.adam/.part-00001-707ffcc9-659e-4d1e-a7d5-d5ea2e3b149b-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/3796714567983528402 /tmp/adamTestMvnb0spyFX/3796714567983528402/unordered.adam /tmp/adamTestMvnb0spyFX/3796714567983528402/unordered.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/3796714567983528402/unordered.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/3796714567983528402/unordered.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/3796714567983528402/unordered.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/3796714567983528402/unordered.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/3796714567983528402/unordered.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/3796714567983528402/unordered.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/3796714567983528402/unordered.adam/_metadata /tmp/adamTestMvnb0spyFX/3796714567983528402/unordered.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/3796714567983528402/unordered.adam/_common_metadata /tmp/adamTestMvnb0spyFX/3796714567983528402/unordered.adam/_references.avro /tmp/adamTestMvnb0spyFX/3796714567983528402/unordered.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/3796714567983528402/unordered.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/3796714567983528402/unordered.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite8656932091009832252 /tmp/adamTestMvnb0spyFX/TempSuite4864908485560893549fragments.adam /tmp/adamTestMvnb0spyFX/TempSuite4864908485560893549fragments.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite4864908485560893549fragments.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite4864908485560893549fragments.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite4864908485560893549fragments.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite4864908485560893549fragments.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite4864908485560893549fragments.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite4864908485560893549fragments.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite4864908485560893549fragments.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite4864908485560893549fragments.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite4864908485560893549fragments.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite4864908485560893549fragments.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite4864908485560893549fragments.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/TempSuite4864908485560893549fragments.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/TempSuite4864908485560893549fragments.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite6290077453156478091.bed /tmp/adamTestMvnb0spyFX/ReadDatasetSuite4078699906295423733 /tmp/adamTestMvnb0spyFX/TempSuite1114322448682573659.sam /tmp/adamTestMvnb0spyFX/TempSuite1114322448682573659.sam/part-r-00000.sam /tmp/adamTestMvnb0spyFX/TempSuite1114322448682573659.sam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite1114322448682573659.sam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite1114322448682573659.sam/.part-r-00000.sam.crc /tmp/adamTestMvnb0spyFX/2163869918819286080 /tmp/adamTestMvnb0spyFX/2163869918819286080/.readname_sorted.sam.crc /tmp/adamTestMvnb0spyFX/2163869918819286080/readname_sorted.sam /tmp/adamTestMvnb0spyFX/.FeatureDatasetFunctionsSuite1972565019332031078.gtf.crc /tmp/adamTestMvnb0spyFX/small.vcf3817014440973685450.vcf /tmp/adamTestMvnb0spyFX/TempSuite6558262601511113577.adam /tmp/adamTestMvnb0spyFX/TempSuite6558262601511113577.adam/referenceName=13 /tmp/adamTestMvnb0spyFX/TempSuite6558262601511113577.adam/referenceName=13/positionBin=0 /tmp/adamTestMvnb0spyFX/TempSuite6558262601511113577.adam/referenceName=13/positionBin=0/.part-00000-cb02d2fc-ed75-42bd-a86e-f4d4044e2fc5.c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite6558262601511113577.adam/referenceName=13/positionBin=0/part-00000-cb02d2fc-ed75-42bd-a86e-f4d4044e2fc5.c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite6558262601511113577.adam/referenceName=2 /tmp/adamTestMvnb0spyFX/TempSuite6558262601511113577.adam/referenceName=2/positionBin=0 /tmp/adamTestMvnb0spyFX/TempSuite6558262601511113577.adam/referenceName=2/positionBin=0/.part-00000-cb02d2fc-ed75-42bd-a86e-f4d4044e2fc5.c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite6558262601511113577.adam/referenceName=2/positionBin=0/part-00000-cb02d2fc-ed75-42bd-a86e-f4d4044e2fc5.c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite6558262601511113577.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite6558262601511113577.adam/._partitionedByStartPos.crc /tmp/adamTestMvnb0spyFX/TempSuite6558262601511113577.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite6558262601511113577.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite6558262601511113577.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite6558262601511113577.adam/_samples.avro /tmp/adamTestMvnb0spyFX/TempSuite6558262601511113577.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite6558262601511113577.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite6558262601511113577.adam/referenceName=1 /tmp/adamTestMvnb0spyFX/TempSuite6558262601511113577.adam/referenceName=1/positionBin=0 /tmp/adamTestMvnb0spyFX/TempSuite6558262601511113577.adam/referenceName=1/positionBin=0/.part-00000-cb02d2fc-ed75-42bd-a86e-f4d4044e2fc5.c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite6558262601511113577.adam/referenceName=1/positionBin=0/part-00000-cb02d2fc-ed75-42bd-a86e-f4d4044e2fc5.c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite6558262601511113577.adam/_header /tmp/adamTestMvnb0spyFX/TempSuite6558262601511113577.adam/_partitionedByStartPos /tmp/adamTestMvnb0spyFX/TempSuite9064501539824233078 /tmp/adamTestMvnb0spyFX/unordered.sam4397184820672159703.sam /tmp/adamTestMvnb0spyFX/unordered.sam2698619676162200606.sam /tmp/adamTestMvnb0spyFX/TempSuite1977064123456401454.adam /tmp/adamTestMvnb0spyFX/TempSuite1977064123456401454.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite1977064123456401454.adam/part-r-00001.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite1977064123456401454.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite1977064123456401454.adam/part-r-00002.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite1977064123456401454.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite1977064123456401454.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite1977064123456401454.adam/_partitionMap.avro /tmp/adamTestMvnb0spyFX/TempSuite1977064123456401454.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite1977064123456401454.adam/._partitionMap.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite1977064123456401454.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite1977064123456401454.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite1977064123456401454.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite1977064123456401454.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite1977064123456401454.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite1977064123456401454.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite1977064123456401454.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite1977064123456401454.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite1977064123456401454.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite1977064123456401454.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/TempSuite1977064123456401454.adam/part-r-00003.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite1977064123456401454.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/TempSuite1977064123456401454.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite837340356408202217.adam /tmp/adamTestMvnb0spyFX/TempSuite837340356408202217.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite837340356408202217.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite837340356408202217.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite837340356408202217.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite837340356408202217.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite837340356408202217.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite837340356408202217.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite837340356408202217.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite837340356408202217.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite837340356408202217.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite2559708281337604694 /tmp/adamTestMvnb0spyFX/TempSuite1906775885009806924.bed /tmp/adamTestMvnb0spyFX/TempSuite1906775885009806924.bed/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite1906775885009806924.bed/.part-00000.crc /tmp/adamTestMvnb0spyFX/TempSuite1906775885009806924.bed/part-00000 /tmp/adamTestMvnb0spyFX/TempSuite1906775885009806924.bed/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite4653128132908912210 /tmp/adamTestMvnb0spyFX/TempSuite3908327096057064305 /tmp/adamTestMvnb0spyFX/TempSuite1693906180333899595 /tmp/adamTestMvnb0spyFX/TempSuite3412431225620808757 /tmp/adamTestMvnb0spyFX/4835353453500017388 /tmp/adamTestMvnb0spyFX/4835353453500017388/coverage.adam /tmp/adamTestMvnb0spyFX/4835353453500017388/coverage.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/4835353453500017388/coverage.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/4835353453500017388/coverage.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/4835353453500017388/coverage.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/4835353453500017388/coverage.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/4835353453500017388/coverage.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/4835353453500017388/coverage.adam/_metadata /tmp/adamTestMvnb0spyFX/4835353453500017388/coverage.adam/_samples.avro /tmp/adamTestMvnb0spyFX/4835353453500017388/coverage.adam/_common_metadata /tmp/adamTestMvnb0spyFX/4835353453500017388/coverage.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/4835353453500017388/coverage.adam/_references.avro /tmp/adamTestMvnb0spyFX/4835353453500017388/coverage.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite7871917859905789272 /tmp/adamTestMvnb0spyFX/TempSuite3203790703652865426 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite8798664605796015327.interval_list /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite8798664605796015327.interval_list/.part-00001.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite8798664605796015327.interval_list/.part-00003.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite8798664605796015327.interval_list/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite8798664605796015327.interval_list/part-00003 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite8798664605796015327.interval_list/.part-00000.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite8798664605796015327.interval_list/part-00000 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite8798664605796015327.interval_list/part-00002 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite8798664605796015327.interval_list/_SUCCESS /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite8798664605796015327.interval_list/part-00001 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite8798664605796015327.interval_list/.part-00002.crc /tmp/adamTestMvnb0spyFX/TempSuite2812302508996262869.adam /tmp/adamTestMvnb0spyFX/TempSuite2812302508996262869.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite2812302508996262869.adam/.part-00000-2049c538-7351-4fbd-ab31-636a555a9d38-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite2812302508996262869.adam/part-00000-2049c538-7351-4fbd-ab31-636a555a9d38-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite2812302508996262869.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite2812302508996262869.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite2812302508996262869.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite2812302508996262869.adam/_samples.avro /tmp/adamTestMvnb0spyFX/TempSuite2812302508996262869.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite2812302508996262869.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite2812302508996262869.adam/_header /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite1162569895607580554.fasta /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite1162569895607580554.fasta/.part-00001.crc /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite1162569895607580554.fasta/.part-00003.crc /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite1162569895607580554.fasta/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite1162569895607580554.fasta/part-00003 /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite1162569895607580554.fasta/.part-00000.crc /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite1162569895607580554.fasta/part-00000 /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite1162569895607580554.fasta/part-00002 /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite1162569895607580554.fasta/_SUCCESS /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite1162569895607580554.fasta/part-00001 /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite1162569895607580554.fasta/.part-00002.crc /tmp/adamTestMvnb0spyFX/TempSuite549177215638878531 /tmp/adamTestMvnb0spyFX/1496711631299336889 /tmp/adamTestMvnb0spyFX/1496711631299336889/genotypes.lex.adam /tmp/adamTestMvnb0spyFX/1496711631299336889/genotypes.lex.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/1496711631299336889/genotypes.lex.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/1496711631299336889/genotypes.lex.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/1496711631299336889/genotypes.lex.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/1496711631299336889/genotypes.lex.adam/._header.crc /tmp/adamTestMvnb0spyFX/1496711631299336889/genotypes.lex.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/1496711631299336889/genotypes.lex.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/1496711631299336889/genotypes.lex.adam/_metadata /tmp/adamTestMvnb0spyFX/1496711631299336889/genotypes.lex.adam/_samples.avro /tmp/adamTestMvnb0spyFX/1496711631299336889/genotypes.lex.adam/_common_metadata /tmp/adamTestMvnb0spyFX/1496711631299336889/genotypes.lex.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/1496711631299336889/genotypes.lex.adam/_references.avro /tmp/adamTestMvnb0spyFX/1496711631299336889/genotypes.lex.adam/_header /tmp/adamTestMvnb0spyFX/1496711631299336889/genotypes.lex.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite446050026265383886.bed /tmp/adamTestMvnb0spyFX/TempSuite446050026265383886.bed/.part-00001.crc /tmp/adamTestMvnb0spyFX/TempSuite446050026265383886.bed/.part-00003.crc /tmp/adamTestMvnb0spyFX/TempSuite446050026265383886.bed/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite446050026265383886.bed/part-00003 /tmp/adamTestMvnb0spyFX/TempSuite446050026265383886.bed/.part-00000.crc /tmp/adamTestMvnb0spyFX/TempSuite446050026265383886.bed/part-00000 /tmp/adamTestMvnb0spyFX/TempSuite446050026265383886.bed/part-00002 /tmp/adamTestMvnb0spyFX/TempSuite446050026265383886.bed/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite446050026265383886.bed/part-00001 /tmp/adamTestMvnb0spyFX/TempSuite446050026265383886.bed/.part-00002.crc /tmp/adamTestMvnb0spyFX/TempSuite2680867690676998127.adam /tmp/adamTestMvnb0spyFX/TempSuite2680867690676998127.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite2680867690676998127.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite2680867690676998127.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite2680867690676998127.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite2680867690676998127.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite2680867690676998127.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite2680867690676998127.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite2680867690676998127.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite2680867690676998127.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite2680867690676998127.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite2680867690676998127.adam/_header /tmp/adamTestMvnb0spyFX/TempSuite2680867690676998127.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite8687534868413937731.2.adam /tmp/adamTestMvnb0spyFX/TempSuite8687534868413937731.2.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite8687534868413937731.2.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite8687534868413937731.2.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite8687534868413937731.2.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite8687534868413937731.2.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite8687534868413937731.2.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite8687534868413937731.2.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite8687534868413937731.2.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite8687534868413937731.2.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite8687534868413937731.2.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite8687534868413937731.2.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite8687534868413937731.2.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/TempSuite8687534868413937731.2.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/TempSuite8687534868413937731.2.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite672931587038074094 /tmp/adamTestMvnb0spyFX/TempSuite4653128132908912210.bed /tmp/adamTestMvnb0spyFX/TempSuite4653128132908912210.bed/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite4653128132908912210.bed/.part-00000.crc /tmp/adamTestMvnb0spyFX/TempSuite4653128132908912210.bed/part-00000 /tmp/adamTestMvnb0spyFX/TempSuite4653128132908912210.bed/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite4828016876548337111.sam /tmp/adamTestMvnb0spyFX/TempSuite4828016876548337111.sam/part-r-00000.sam /tmp/adamTestMvnb0spyFX/TempSuite4828016876548337111.sam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite4828016876548337111.sam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite4828016876548337111.sam/.part-r-00000.sam.crc /tmp/adamTestMvnb0spyFX/TempSuite1074130116131657962.bam /tmp/adamTestMvnb0spyFX/TempSuite1074130116131657962.bam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite1074130116131657962.bam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite1074130116131657962.bam/.part-r-00000.bam.crc /tmp/adamTestMvnb0spyFX/TempSuite1074130116131657962.bam/part-r-00000.bam /tmp/adamTestMvnb0spyFX/TempSuite933049904116880796 /tmp/adamTestMvnb0spyFX/TempSuite8375246841013286466 /tmp/adamTestMvnb0spyFX/TempSuite3615595344287274399.bam /tmp/adamTestMvnb0spyFX/TempSuite8334162159659703150.adam /tmp/adamTestMvnb0spyFX/TempSuite8334162159659703150.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite8334162159659703150.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite8334162159659703150.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite8334162159659703150.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite8334162159659703150.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite8334162159659703150.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite8334162159659703150.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite8334162159659703150.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite8334162159659703150.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite8334162159659703150.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite8334162159659703150.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite8334162159659703150.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/TempSuite8334162159659703150.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/TempSuite8334162159659703150.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite5633630738752138615.adam /tmp/adamTestMvnb0spyFX/TempSuite5633630738752138615.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite5633630738752138615.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite5633630738752138615.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite5633630738752138615.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite5633630738752138615.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite5633630738752138615.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite5633630738752138615.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/TempSuite5633630738752138615.adam/.part-00000-336fb8ab-d651-422a-91bc-48d7260d2209-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite5633630738752138615.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/TempSuite5633630738752138615.adam/part-00000-336fb8ab-d651-422a-91bc-48d7260d2209-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite8375246841013286466.adam /tmp/adamTestMvnb0spyFX/TempSuite8375246841013286466.adam/.part-00000-56f5a716-ca33-4d0e-8f48-78be1d38902d-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite8375246841013286466.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite8375246841013286466.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite8375246841013286466.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite8375246841013286466.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite8375246841013286466.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite8375246841013286466.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite8375246841013286466.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/TempSuite8375246841013286466.adam/part-00000-56f5a716-ca33-4d0e-8f48-78be1d38902d-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite8375246841013286466.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/TempSuite2561152622430288041 /tmp/adamTestMvnb0spyFX/4031972172221297135 /tmp/adamTestMvnb0spyFX/4031972172221297135/out.cram_head /tmp/adamTestMvnb0spyFX/4031972172221297135/out.cram_tail /tmp/adamTestMvnb0spyFX/4031972172221297135/out.cram_tail/.part-r-00001.cram.crc /tmp/adamTestMvnb0spyFX/4031972172221297135/out.cram_tail/.part-r-00003.cram.crc /tmp/adamTestMvnb0spyFX/4031972172221297135/out.cram_tail/part-r-00000.cram /tmp/adamTestMvnb0spyFX/4031972172221297135/out.cram_tail/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/4031972172221297135/out.cram_tail/.part-r-00002.cram.crc /tmp/adamTestMvnb0spyFX/4031972172221297135/out.cram_tail/part-r-00002.cram /tmp/adamTestMvnb0spyFX/4031972172221297135/out.cram_tail/_SUCCESS /tmp/adamTestMvnb0spyFX/4031972172221297135/out.cram_tail/.part-r-00000.cram.crc /tmp/adamTestMvnb0spyFX/4031972172221297135/out.cram_tail/part-r-00001.cram /tmp/adamTestMvnb0spyFX/4031972172221297135/out.cram_tail/part-r-00003.cram /tmp/adamTestMvnb0spyFX/4031972172221297135/.out.cram.crc /tmp/adamTestMvnb0spyFX/4031972172221297135/out.cram /tmp/adamTestMvnb0spyFX/4031972172221297135/.out.cram_head.crc /tmp/adamTestMvnb0spyFX/TempSuite2711999007946696172 /tmp/adamTestMvnb0spyFX/6904629239354370495 /tmp/adamTestMvnb0spyFX/6904629239354370495/out.cram_head /tmp/adamTestMvnb0spyFX/6904629239354370495/out.cram_tail /tmp/adamTestMvnb0spyFX/6904629239354370495/out.cram_tail/.part-r-00001.cram.crc /tmp/adamTestMvnb0spyFX/6904629239354370495/out.cram_tail/.part-r-00003.cram.crc /tmp/adamTestMvnb0spyFX/6904629239354370495/out.cram_tail/part-r-00000.cram /tmp/adamTestMvnb0spyFX/6904629239354370495/out.cram_tail/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/6904629239354370495/out.cram_tail/.part-r-00002.cram.crc /tmp/adamTestMvnb0spyFX/6904629239354370495/out.cram_tail/part-r-00002.cram /tmp/adamTestMvnb0spyFX/6904629239354370495/out.cram_tail/_SUCCESS /tmp/adamTestMvnb0spyFX/6904629239354370495/out.cram_tail/.part-r-00000.cram.crc /tmp/adamTestMvnb0spyFX/6904629239354370495/out.cram_tail/part-r-00001.cram /tmp/adamTestMvnb0spyFX/6904629239354370495/out.cram_tail/part-r-00003.cram /tmp/adamTestMvnb0spyFX/6904629239354370495/.out.cram.crc /tmp/adamTestMvnb0spyFX/6904629239354370495/out.cram /tmp/adamTestMvnb0spyFX/6904629239354370495/.out.cram_head.crc /tmp/adamTestMvnb0spyFX/TempSuite9062572497392727183.adam /tmp/adamTestMvnb0spyFX/TempSuite9062572497392727183.adam/.part-00001-d047f87a-d87f-4184-ae4e-4f9ed39a9969-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite9062572497392727183.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite9062572497392727183.adam/.part-00000-d047f87a-d87f-4184-ae4e-4f9ed39a9969-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite9062572497392727183.adam/part-00000-d047f87a-d87f-4184-ae4e-4f9ed39a9969-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite9062572497392727183.adam/.part-00002-d047f87a-d87f-4184-ae4e-4f9ed39a9969-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite9062572497392727183.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite9062572497392727183.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite9062572497392727183.adam/part-00001-d047f87a-d87f-4184-ae4e-4f9ed39a9969-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite9062572497392727183.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite9062572497392727183.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite9062572497392727183.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite9062572497392727183.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/TempSuite9062572497392727183.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/TempSuite9062572497392727183.adam/part-00002-d047f87a-d87f-4184-ae4e-4f9ed39a9969-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite8132083261475085869 /tmp/adamTestMvnb0spyFX/TempSuite3189680717339125351.adam /tmp/adamTestMvnb0spyFX/TempSuite3189680717339125351.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite3189680717339125351.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite3189680717339125351.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite3189680717339125351.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite3189680717339125351.adam/part-00000-86fdad76-816f-40c6-9cc2-26a7aeb9ee08-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite3189680717339125351.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite3189680717339125351.adam/.part-00000-86fdad76-816f-40c6-9cc2-26a7aeb9ee08-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite3189680717339125351.adam/_header /tmp/adamTestMvnb0spyFX/TempSuite2983626938439122107.sam /tmp/adamTestMvnb0spyFX/TempSuite2983626938439122107.sam/part-r-00000.sam /tmp/adamTestMvnb0spyFX/TempSuite2983626938439122107.sam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite2983626938439122107.sam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite2983626938439122107.sam/.part-r-00000.sam.crc /tmp/adamTestMvnb0spyFX/TempSuite7849583854483594190.adam /tmp/adamTestMvnb0spyFX/TempSuite7849583854483594190.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite7849583854483594190.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite7849583854483594190.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite7849583854483594190.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite7849583854483594190.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite7849583854483594190.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite7849583854483594190.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite7849583854483594190.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite7849583854483594190.adam/_samples.avro /tmp/adamTestMvnb0spyFX/TempSuite7849583854483594190.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite7849583854483594190.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite7849583854483594190.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite7849583854483594190.adam/_header /tmp/adamTestMvnb0spyFX/TempSuite7849583854483594190.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/2424800762552053989 /tmp/adamTestMvnb0spyFX/2424800762552053989/.small.vcf.bgz.crc /tmp/adamTestMvnb0spyFX/2424800762552053989/small.vcf.bgz /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite6283135506115011959 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite682398707337933684 /tmp/adamTestMvnb0spyFX/TempSuite8797568639728211684.adam /tmp/adamTestMvnb0spyFX/TempSuite8797568639728211684.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite8797568639728211684.adam/._partitionedByStartPos.crc /tmp/adamTestMvnb0spyFX/TempSuite8797568639728211684.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite8797568639728211684.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite8797568639728211684.adam/_samples.avro /tmp/adamTestMvnb0spyFX/TempSuite8797568639728211684.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite8797568639728211684.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite8797568639728211684.adam/referenceName=1 /tmp/adamTestMvnb0spyFX/TempSuite8797568639728211684.adam/referenceName=1/positionBin=14 /tmp/adamTestMvnb0spyFX/TempSuite8797568639728211684.adam/referenceName=1/positionBin=14/.part-00000-634a7468-33dd-4260-bf31-81900eeb22e3.c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite8797568639728211684.adam/referenceName=1/positionBin=14/part-00000-634a7468-33dd-4260-bf31-81900eeb22e3.c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite8797568639728211684.adam/referenceName=1/positionBin=169 /tmp/adamTestMvnb0spyFX/TempSuite8797568639728211684.adam/referenceName=1/positionBin=169/part-00001-634a7468-33dd-4260-bf31-81900eeb22e3.c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite8797568639728211684.adam/referenceName=1/positionBin=169/.part-00001-634a7468-33dd-4260-bf31-81900eeb22e3.c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite8797568639728211684.adam/referenceName=1/positionBin=240 /tmp/adamTestMvnb0spyFX/TempSuite8797568639728211684.adam/referenceName=1/positionBin=240/part-00002-634a7468-33dd-4260-bf31-81900eeb22e3.c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite8797568639728211684.adam/referenceName=1/positionBin=240/.part-00002-634a7468-33dd-4260-bf31-81900eeb22e3.c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite8797568639728211684.adam/referenceName=1/positionBin=0 /tmp/adamTestMvnb0spyFX/TempSuite8797568639728211684.adam/referenceName=1/positionBin=0/.part-00000-634a7468-33dd-4260-bf31-81900eeb22e3.c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite8797568639728211684.adam/referenceName=1/positionBin=0/part-00000-634a7468-33dd-4260-bf31-81900eeb22e3.c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite8797568639728211684.adam/_partitionedByStartPos /tmp/adamTestMvnb0spyFX/TempSuite6312963797152359819.adam /tmp/adamTestMvnb0spyFX/TempSuite6312963797152359819.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite6312963797152359819.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite6312963797152359819.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite6312963797152359819.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite6312963797152359819.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite6312963797152359819.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite6312963797152359819.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite6312963797152359819.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite6312963797152359819.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite6312963797152359819.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite6312963797152359819.adam/_header /tmp/adamTestMvnb0spyFX/TempSuite6312963797152359819.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite39773438197423630 /tmp/adamTestMvnb0spyFX/TempSuite2452669463788897595.bed /tmp/adamTestMvnb0spyFX/TempSuite2452669463788897595.bed/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite2452669463788897595.bed/.part-00000.crc /tmp/adamTestMvnb0spyFX/TempSuite2452669463788897595.bed/part-00000 /tmp/adamTestMvnb0spyFX/TempSuite2452669463788897595.bed/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite2099431306684589984.bed /tmp/adamTestMvnb0spyFX/TempSuite2099431306684589984.bed/.part-00001.crc /tmp/adamTestMvnb0spyFX/TempSuite2099431306684589984.bed/.part-00003.crc /tmp/adamTestMvnb0spyFX/TempSuite2099431306684589984.bed/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite2099431306684589984.bed/part-00003 /tmp/adamTestMvnb0spyFX/TempSuite2099431306684589984.bed/.part-00000.crc /tmp/adamTestMvnb0spyFX/TempSuite2099431306684589984.bed/part-00000 /tmp/adamTestMvnb0spyFX/TempSuite2099431306684589984.bed/part-00002 /tmp/adamTestMvnb0spyFX/TempSuite2099431306684589984.bed/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite2099431306684589984.bed/part-00001 /tmp/adamTestMvnb0spyFX/TempSuite2099431306684589984.bed/.part-00002.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite3696752059678055228.gtf /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite3696752059678055228.gtf/.part-00001.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite3696752059678055228.gtf/.part-00003.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite3696752059678055228.gtf/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite3696752059678055228.gtf/part-00003 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite3696752059678055228.gtf/.part-00000.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite3696752059678055228.gtf/part-00000 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite3696752059678055228.gtf/part-00002 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite3696752059678055228.gtf/_SUCCESS /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite3696752059678055228.gtf/part-00001 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite3696752059678055228.gtf/.part-00002.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite4276104823206437063 /tmp/adamTestMvnb0spyFX/TempSuite5025760378891454359 /tmp/adamTestMvnb0spyFX/TempSuite4693194982570133225.sam /tmp/adamTestMvnb0spyFX/TempSuite5451195398422145575.fq /tmp/adamTestMvnb0spyFX/TempSuite5451195398422145575.fq/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite5451195398422145575.fq/.part-00000.crc /tmp/adamTestMvnb0spyFX/TempSuite5451195398422145575.fq/part-00000 /tmp/adamTestMvnb0spyFX/TempSuite5451195398422145575.fq/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite9102691510130872758 /tmp/adamTestMvnb0spyFX/noqual7720914650284784218 /tmp/adamTestMvnb0spyFX/noqual7720914650284784218/noqualB.fastq /tmp/adamTestMvnb0spyFX/noqual7720914650284784218/noqualB.fastq/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/noqual7720914650284784218/noqualB.fastq/.part-00000.crc /tmp/adamTestMvnb0spyFX/noqual7720914650284784218/noqualB.fastq/part-00000 /tmp/adamTestMvnb0spyFX/noqual7720914650284784218/noqualB.fastq/_SUCCESS /tmp/adamTestMvnb0spyFX/noqual7720914650284784218/noqualA.sam /tmp/adamTestMvnb0spyFX/noqual7720914650284784218/noqualA.sam/part-r-00000.sam /tmp/adamTestMvnb0spyFX/noqual7720914650284784218/noqualA.sam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/noqual7720914650284784218/noqualA.sam/_SUCCESS /tmp/adamTestMvnb0spyFX/noqual7720914650284784218/noqualA.sam/.part-r-00000.sam.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite2131915593725705992.narrowPeak /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite2131915593725705992.narrowPeak/.part-00001.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite2131915593725705992.narrowPeak/.part-00003.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite2131915593725705992.narrowPeak/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite2131915593725705992.narrowPeak/part-00003 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite2131915593725705992.narrowPeak/.part-00000.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite2131915593725705992.narrowPeak/part-00000 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite2131915593725705992.narrowPeak/part-00002 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite2131915593725705992.narrowPeak/_SUCCESS /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite2131915593725705992.narrowPeak/part-00001 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite2131915593725705992.narrowPeak/.part-00002.crc /tmp/adamTestMvnb0spyFX/TempSuite1677209627376075575.bed /tmp/adamTestMvnb0spyFX/TempSuite1677209627376075575.bed/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite1677209627376075575.bed/.part-00000.crc /tmp/adamTestMvnb0spyFX/TempSuite1677209627376075575.bed/part-00000 /tmp/adamTestMvnb0spyFX/TempSuite1677209627376075575.bed/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite2585456028549889379 /tmp/adamTestMvnb0spyFX/TempSuite280989017013718100 /tmp/adamTestMvnb0spyFX/TempSuite3171600986693125651 /tmp/adamTestMvnb0spyFX/TempSuite3863731658561831373 /tmp/adamTestMvnb0spyFX/TempSuite8643128965574547905 /tmp/adamTestMvnb0spyFX/TempSuite933049904116880796.adam /tmp/adamTestMvnb0spyFX/TempSuite933049904116880796.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite933049904116880796.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite933049904116880796.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite933049904116880796.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite933049904116880796.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite933049904116880796.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite933049904116880796.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite933049904116880796.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite933049904116880796.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite933049904116880796.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite933049904116880796.adam/_header /tmp/adamTestMvnb0spyFX/TempSuite933049904116880796.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite6061207191134941194 /tmp/adamTestMvnb0spyFX/1567623483586-0 /tmp/adamTestMvnb0spyFX/1567623483586-0/bqsr1-r2.fq /tmp/adamTestMvnb0spyFX/1567623483586-0/bqsr1-r2.fq/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/1567623483586-0/bqsr1-r2.fq/.part-00000.crc /tmp/adamTestMvnb0spyFX/1567623483586-0/bqsr1-r2.fq/part-00000 /tmp/adamTestMvnb0spyFX/1567623483586-0/bqsr1-r2.fq/_SUCCESS /tmp/adamTestMvnb0spyFX/1567623483586-0/bqsr1-r1.fq /tmp/adamTestMvnb0spyFX/1567623483586-0/bqsr1-r1.fq/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/1567623483586-0/bqsr1-r1.fq/.part-00000.crc /tmp/adamTestMvnb0spyFX/1567623483586-0/bqsr1-r1.fq/part-00000 /tmp/adamTestMvnb0spyFX/1567623483586-0/bqsr1-r1.fq/_SUCCESS /tmp/adamTestMvnb0spyFX/gencode.v7.annotation.trunc10.bed6579782386580726545.v7.annotation.trunc10.bed /tmp/adamTestMvnb0spyFX/sorted-variants.lex.vcf3485688223328121635.lex.vcf /tmp/adamTestMvnb0spyFX/TempSuite2680867690676998127 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite3011752689495784339.interval_list /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite3011752689495784339.interval_list/.part-00001.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite3011752689495784339.interval_list/.part-00003.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite3011752689495784339.interval_list/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite3011752689495784339.interval_list/part-00003 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite3011752689495784339.interval_list/.part-00000.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite3011752689495784339.interval_list/part-00000 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite3011752689495784339.interval_list/part-00002 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite3011752689495784339.interval_list/_SUCCESS /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite3011752689495784339.interval_list/part-00001 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite3011752689495784339.interval_list/.part-00002.crc /tmp/adamTestMvnb0spyFX/ReadDatasetSuite7544764597848270573 /tmp/adamTestMvnb0spyFX/TempSuite8277560239945508869.adam /tmp/adamTestMvnb0spyFX/TempSuite8277560239945508869.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite8277560239945508869.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite8277560239945508869.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite8277560239945508869.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite8277560239945508869.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite8277560239945508869.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite8277560239945508869.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite8277560239945508869.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite8277560239945508869.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite8277560239945508869.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite4891748965657131770 /tmp/adamTestMvnb0spyFX/TempSuite6258110988387097674 /tmp/adamTestMvnb0spyFX/ReadDatasetSuite5800073287503269807 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite3185782489762472486 /tmp/adamTestMvnb0spyFX/TempSuite8440131802153487644.adam /tmp/adamTestMvnb0spyFX/TempSuite8440131802153487644.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite8440131802153487644.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite8440131802153487644.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite8440131802153487644.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite8440131802153487644.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite8440131802153487644.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite8440131802153487644.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite8440131802153487644.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite8440131802153487644.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite8440131802153487644.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite8440131802153487644.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite8440131802153487644.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/TempSuite8440131802153487644.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/TempSuite8440131802153487644.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/1127288397024252861 /tmp/adamTestMvnb0spyFX/1127288397024252861/.unordered.bam.crc /tmp/adamTestMvnb0spyFX/1127288397024252861/unordered.bam /tmp/adamTestMvnb0spyFX/small.vcf1306019249132304840.vcf /tmp/adamTestMvnb0spyFX/6661399579771963470 /tmp/adamTestMvnb0spyFX/6661399579771963470/sorted.vcf /tmp/adamTestMvnb0spyFX/6661399579771963470/.sorted.vcf.crc /tmp/adamTestMvnb0spyFX/TempSuite834572243081767011 /tmp/adamTestMvnb0spyFX/TempSuite9102373516198292171.adam /tmp/adamTestMvnb0spyFX/TempSuite9102373516198292171.adam/.part-00001-c6039d04-abc9-49bd-8846-c025b3440c39-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite9102373516198292171.adam/.part-00002-c6039d04-abc9-49bd-8846-c025b3440c39-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite9102373516198292171.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite9102373516198292171.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite9102373516198292171.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite9102373516198292171.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite9102373516198292171.adam/part-00002-c6039d04-abc9-49bd-8846-c025b3440c39-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite9102373516198292171.adam/part-00000-c6039d04-abc9-49bd-8846-c025b3440c39-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite9102373516198292171.adam/.part-00000-c6039d04-abc9-49bd-8846-c025b3440c39-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite9102373516198292171.adam/part-00001-c6039d04-abc9-49bd-8846-c025b3440c39-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite6539652114972170763 /tmp/adamTestMvnb0spyFX/TempSuite39773438197423630.bed /tmp/adamTestMvnb0spyFX/TempSuite39773438197423630.bed/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite39773438197423630.bed/.part-00000.crc /tmp/adamTestMvnb0spyFX/TempSuite39773438197423630.bed/part-00000 /tmp/adamTestMvnb0spyFX/TempSuite39773438197423630.bed/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite834572243081767011.adam /tmp/adamTestMvnb0spyFX/TempSuite834572243081767011.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite834572243081767011.adam/.part-00002-1b9ed25b-cae8-4734-a090-3436b01839d8-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite834572243081767011.adam/.part-00000-1b9ed25b-cae8-4734-a090-3436b01839d8-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite834572243081767011.adam/part-00000-1b9ed25b-cae8-4734-a090-3436b01839d8-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite834572243081767011.adam/.part-00001-1b9ed25b-cae8-4734-a090-3436b01839d8-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite834572243081767011.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite834572243081767011.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite834572243081767011.adam/part-00002-1b9ed25b-cae8-4734-a090-3436b01839d8-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite834572243081767011.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite834572243081767011.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite834572243081767011.adam/part-00001-1b9ed25b-cae8-4734-a090-3436b01839d8-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite834572243081767011.adam/_header /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite3421258775967403602 /tmp/adamTestMvnb0spyFX/TempSuite492759748512553004.adam /tmp/adamTestMvnb0spyFX/TempSuite492759748512553004.adam/part-00002-5a31f7a1-58aa-4b95-85fb-baad1c073a46-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite492759748512553004.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite492759748512553004.adam/.part-00002-5a31f7a1-58aa-4b95-85fb-baad1c073a46-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite492759748512553004.adam/part-00000-5a31f7a1-58aa-4b95-85fb-baad1c073a46-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite492759748512553004.adam/.part-00000-5a31f7a1-58aa-4b95-85fb-baad1c073a46-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite492759748512553004.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite492759748512553004.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite492759748512553004.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite492759748512553004.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite492759748512553004.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite492759748512553004.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/TempSuite492759748512553004.adam/.part-00001-5a31f7a1-58aa-4b95-85fb-baad1c073a46-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite492759748512553004.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/TempSuite492759748512553004.adam/part-00001-5a31f7a1-58aa-4b95-85fb-baad1c073a46-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/SliceDatasetSuite4189848396067223870.adam /tmp/adamTestMvnb0spyFX/SliceDatasetSuite4189848396067223870.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnb0spyFX/SliceDatasetSuite4189848396067223870.adam/part-r-00001.gz.parquet /tmp/adamTestMvnb0spyFX/SliceDatasetSuite4189848396067223870.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/SliceDatasetSuite4189848396067223870.adam/part-r-00002.gz.parquet /tmp/adamTestMvnb0spyFX/SliceDatasetSuite4189848396067223870.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/SliceDatasetSuite4189848396067223870.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/SliceDatasetSuite4189848396067223870.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/SliceDatasetSuite4189848396067223870.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/SliceDatasetSuite4189848396067223870.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/SliceDatasetSuite4189848396067223870.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnb0spyFX/SliceDatasetSuite4189848396067223870.adam/_metadata /tmp/adamTestMvnb0spyFX/SliceDatasetSuite4189848396067223870.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnb0spyFX/SliceDatasetSuite4189848396067223870.adam/_common_metadata /tmp/adamTestMvnb0spyFX/SliceDatasetSuite4189848396067223870.adam/_references.avro /tmp/adamTestMvnb0spyFX/SliceDatasetSuite4189848396067223870.adam/part-r-00003.gz.parquet /tmp/adamTestMvnb0spyFX/SliceDatasetSuite4189848396067223870.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite3040963875912192245.adam /tmp/adamTestMvnb0spyFX/TempSuite3040963875912192245.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite3040963875912192245.adam/part-r-00001.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite3040963875912192245.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite3040963875912192245.adam/part-r-00004.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite3040963875912192245.adam/part-r-00002.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite3040963875912192245.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite3040963875912192245.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite3040963875912192245.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite3040963875912192245.adam/.part-r-00004.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite3040963875912192245.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite3040963875912192245.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite3040963875912192245.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite3040963875912192245.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite3040963875912192245.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite3040963875912192245.adam/_samples.avro /tmp/adamTestMvnb0spyFX/TempSuite3040963875912192245.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite3040963875912192245.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite3040963875912192245.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite3040963875912192245.adam/part-r-00003.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite3040963875912192245.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/random.vcf7182771349213616779.vcf /tmp/adamTestMvnb0spyFX/TempSuite5389936319198997066 /tmp/adamTestMvnb0spyFX/TempSuite332130632439617767.adam /tmp/adamTestMvnb0spyFX/TempSuite332130632439617767.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite332130632439617767.adam/part-00000-f1f735ce-3618-4421-9eb7-04c576e2b7b9-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite332130632439617767.adam/.part-00000-f1f735ce-3618-4421-9eb7-04c576e2b7b9-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite332130632439617767.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite332130632439617767.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite332130632439617767.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite332130632439617767.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite332130632439617767.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite332130632439617767.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/TempSuite332130632439617767.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite1009651091727369744.interval_list /tmp/adamTestMvnb0spyFX/TempSuite206640718523830921.adam /tmp/adamTestMvnb0spyFX/TempSuite206640718523830921.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite206640718523830921.adam/part-r-00001.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite206640718523830921.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite206640718523830921.adam/part-r-00002.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite206640718523830921.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite206640718523830921.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite206640718523830921.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite206640718523830921.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite206640718523830921.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite206640718523830921.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite206640718523830921.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite206640718523830921.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite206640718523830921.adam/_samples.avro /tmp/adamTestMvnb0spyFX/TempSuite206640718523830921.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite206640718523830921.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite206640718523830921.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite206640718523830921.adam/part-r-00003.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite206640718523830921.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite1614894730279782033.gff3 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite1614894730279782033.gff3/.part-00001.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite1614894730279782033.gff3/.part-00003.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite1614894730279782033.gff3/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite1614894730279782033.gff3/part-00003 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite1614894730279782033.gff3/.part-00000.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite1614894730279782033.gff3/part-00000 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite1614894730279782033.gff3/part-00002 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite1614894730279782033.gff3/_SUCCESS /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite1614894730279782033.gff3/part-00001 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite1614894730279782033.gff3/.part-00002.crc /tmp/adamTestMvnb0spyFX/TempSuite4764900798734993731 /tmp/adamTestMvnb0spyFX/TempSuite6505127533746944367 /tmp/adamTestMvnb0spyFX/TempSuite389059404325740407.adam /tmp/adamTestMvnb0spyFX/TempSuite389059404325740407.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite389059404325740407.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite389059404325740407.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite389059404325740407.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite389059404325740407.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite389059404325740407.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite389059404325740407.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite389059404325740407.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite389059404325740407.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite389059404325740407.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite389059404325740407.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite389059404325740407.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/TempSuite389059404325740407.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/TempSuite389059404325740407.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite7901277110317999825.adam /tmp/adamTestMvnb0spyFX/TempSuite7901277110317999825.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite7901277110317999825.adam/part-r-00001.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite7901277110317999825.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite7901277110317999825.adam/part-r-00002.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite7901277110317999825.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite7901277110317999825.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite7901277110317999825.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite7901277110317999825.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite7901277110317999825.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite7901277110317999825.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite7901277110317999825.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite7901277110317999825.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite7901277110317999825.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite7901277110317999825.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite7901277110317999825.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite7901277110317999825.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite7901277110317999825.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/TempSuite7901277110317999825.adam/part-r-00003.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite7901277110317999825.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/TempSuite7901277110317999825.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite1231767842583675175 /tmp/adamTestMvnb0spyFX/TempSuite9036578199426598033 /tmp/adamTestMvnb0spyFX/TempSuite4269628080222825244 /tmp/adamTestMvnb0spyFX/TempSuite7288882369142853552.adam /tmp/adamTestMvnb0spyFX/TempSuite7288882369142853552.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite7288882369142853552.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite7288882369142853552.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite7288882369142853552.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite7288882369142853552.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite7288882369142853552.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite7288882369142853552.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite7288882369142853552.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite7288882369142853552.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite7288882369142853552.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite7288882369142853552.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite7288882369142853552.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/TempSuite7288882369142853552.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/TempSuite7288882369142853552.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite4195308774314905096 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite2737865839480813740.bed /tmp/adamTestMvnb0spyFX/TempSuite1777774337375880689 /tmp/adamTestMvnb0spyFX/unsorted.sam5922430557395086974.sam /tmp/adamTestMvnb0spyFX/TempSuite549177215638878531.adam /tmp/adamTestMvnb0spyFX/TempSuite549177215638878531.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite549177215638878531.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite549177215638878531.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite549177215638878531.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite549177215638878531.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite549177215638878531.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite549177215638878531.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite549177215638878531.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite549177215638878531.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite549177215638878531.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite549177215638878531.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite549177215638878531.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/TempSuite549177215638878531.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/TempSuite549177215638878531.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite8184291913215119168 /tmp/adamTestMvnb0spyFX/TempSuite3187683752715364961.bed /tmp/adamTestMvnb0spyFX/TempSuite3187683752715364961.bed/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite3187683752715364961.bed/.part-00000.crc /tmp/adamTestMvnb0spyFX/TempSuite3187683752715364961.bed/part-00000 /tmp/adamTestMvnb0spyFX/TempSuite3187683752715364961.bed/_SUCCESS /tmp/adamTestMvnb0spyFX/javaAC3412121298498841303 /tmp/adamTestMvnb0spyFX/javaAC3412121298498841303/testRdd.slices.adam /tmp/adamTestMvnb0spyFX/javaAC3412121298498841303/testRdd.slices.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/javaAC3412121298498841303/testRdd.slices.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/javaAC3412121298498841303/testRdd.slices.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/javaAC3412121298498841303/testRdd.slices.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/javaAC3412121298498841303/testRdd.slices.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/javaAC3412121298498841303/testRdd.slices.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/javaAC3412121298498841303/testRdd.slices.adam/_metadata /tmp/adamTestMvnb0spyFX/javaAC3412121298498841303/testRdd.slices.adam/_common_metadata /tmp/adamTestMvnb0spyFX/javaAC3412121298498841303/testRdd.slices.adam/_references.avro /tmp/adamTestMvnb0spyFX/javaAC3412121298498841303/testRdd.slices.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite4844015183568300088 /tmp/adamTestMvnb0spyFX/TempSuite8519304327923241283 /tmp/adamTestMvnb0spyFX/TempSuite2498420633543449819.adam /tmp/adamTestMvnb0spyFX/TempSuite2498420633543449819.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite2498420633543449819.adam/part-r-00001.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite2498420633543449819.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite2498420633543449819.adam/part-r-00002.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite2498420633543449819.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite2498420633543449819.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite2498420633543449819.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite2498420633543449819.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite2498420633543449819.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite2498420633543449819.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite2498420633543449819.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite2498420633543449819.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite2498420633543449819.adam/_samples.avro /tmp/adamTestMvnb0spyFX/TempSuite2498420633543449819.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite2498420633543449819.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite2498420633543449819.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite2498420633543449819.adam/part-r-00003.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite2498420633543449819.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/bqsr18831545906206691515 /tmp/adamTestMvnb0spyFX/bqsr18831545906206691515/.bqsr1.sam.crc /tmp/adamTestMvnb0spyFX/bqsr18831545906206691515/bqsr1.sam /tmp/adamTestMvnb0spyFX/TempSuite5862398345810313642.fq /tmp/adamTestMvnb0spyFX/TempSuite5862398345810313642.fq/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite5862398345810313642.fq/.part-00000.crc /tmp/adamTestMvnb0spyFX/TempSuite5862398345810313642.fq/part-00000 /tmp/adamTestMvnb0spyFX/TempSuite5862398345810313642.fq/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite7256115861911031006 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite374169850220731375 /tmp/adamTestMvnb0spyFX/TempSuite5386053368089779700 /tmp/adamTestMvnb0spyFX/TempSuite6539652114972170763.adam /tmp/adamTestMvnb0spyFX/TempSuite6539652114972170763.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite6539652114972170763.adam/part-r-00001.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite6539652114972170763.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite6539652114972170763.adam/part-r-00002.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite6539652114972170763.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite6539652114972170763.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite6539652114972170763.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite6539652114972170763.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite6539652114972170763.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite6539652114972170763.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite6539652114972170763.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite6539652114972170763.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite6539652114972170763.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite6539652114972170763.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite6539652114972170763.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite6539652114972170763.adam/part-r-00003.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite6539652114972170763.adam/_header /tmp/adamTestMvnb0spyFX/TempSuite6539652114972170763.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/sorted.sam7754500342167971445.sam /tmp/adamTestMvnb0spyFX/TempSuite1830515402698601955 /tmp/adamTestMvnb0spyFX/.SliceDatasetSuite8342876812053830693.fasta.crc /tmp/adamTestMvnb0spyFX/TempSuite3247859844225095228 /tmp/adamTestMvnb0spyFX/.TempSuite8683935210559946643.fq.crc /tmp/adamTestMvnb0spyFX/TempSuite6607672961631973944.adam /tmp/adamTestMvnb0spyFX/TempSuite6607672961631973944.adam/part-00001-a0c03efc-65ff-44a2-bd0d-8cfc638eca57-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite6607672961631973944.adam/.part-00000-a0c03efc-65ff-44a2-bd0d-8cfc638eca57-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite6607672961631973944.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite6607672961631973944.adam/.part-00001-a0c03efc-65ff-44a2-bd0d-8cfc638eca57-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite6607672961631973944.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite6607672961631973944.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite6607672961631973944.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite6607672961631973944.adam/.part-00002-a0c03efc-65ff-44a2-bd0d-8cfc638eca57-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite6607672961631973944.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite6607672961631973944.adam/part-00002-a0c03efc-65ff-44a2-bd0d-8cfc638eca57-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite6607672961631973944.adam/part-00000-a0c03efc-65ff-44a2-bd0d-8cfc638eca57-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite6607672961631973944.adam/_header /tmp/adamTestMvnb0spyFX/TempSuite5325554587606682093.adam /tmp/adamTestMvnb0spyFX/TempSuite5325554587606682093.adam/part-00002-75929b97-ef4a-4dbe-8bff-7ec97adbc177-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite5325554587606682093.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite5325554587606682093.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite5325554587606682093.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite5325554587606682093.adam/.part-00001-75929b97-ef4a-4dbe-8bff-7ec97adbc177-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite5325554587606682093.adam/part-00001-75929b97-ef4a-4dbe-8bff-7ec97adbc177-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite5325554587606682093.adam/_samples.avro /tmp/adamTestMvnb0spyFX/TempSuite5325554587606682093.adam/.part-00002-75929b97-ef4a-4dbe-8bff-7ec97adbc177-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite5325554587606682093.adam/.part-00000-75929b97-ef4a-4dbe-8bff-7ec97adbc177-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite5325554587606682093.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite5325554587606682093.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite5325554587606682093.adam/part-00000-75929b97-ef4a-4dbe-8bff-7ec97adbc177-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite2559708281337604694.adam /tmp/adamTestMvnb0spyFX/TempSuite2559708281337604694.adam/part-00001-071fb8f9-af5e-414f-83b5-882d6000d3e6-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite2559708281337604694.adam/part-00002-071fb8f9-af5e-414f-83b5-882d6000d3e6-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite2559708281337604694.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite2559708281337604694.adam/part-00000-071fb8f9-af5e-414f-83b5-882d6000d3e6-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite2559708281337604694.adam/.part-00000-071fb8f9-af5e-414f-83b5-882d6000d3e6-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite2559708281337604694.adam/.part-00002-071fb8f9-af5e-414f-83b5-882d6000d3e6-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite2559708281337604694.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite2559708281337604694.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite2559708281337604694.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite2559708281337604694.adam/.part-00001-071fb8f9-af5e-414f-83b5-882d6000d3e6-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite9163194737924616518 /tmp/adamTestMvnb0spyFX/unordered.sam8937401711951651164.sam /tmp/adamTestMvnb0spyFX/artificial.sam373747694413779774.sam /tmp/adamTestMvnb0spyFX/4996282095663949561 /tmp/adamTestMvnb0spyFX/4996282095663949561/.artificial.cram.crc /tmp/adamTestMvnb0spyFX/4996282095663949561/artificial.cram /tmp/adamTestMvnb0spyFX/TempSuite6460163979420353916 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite368976083470974182 /tmp/adamTestMvnb0spyFX/TempSuite2404298527513613635 /tmp/adamTestMvnb0spyFX/adam-cli.TransformFeaturesSuite2546309214448591589.adam /tmp/adamTestMvnb0spyFX/adam-cli.TransformFeaturesSuite2546309214448591589.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/adam-cli.TransformFeaturesSuite2546309214448591589.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/adam-cli.TransformFeaturesSuite2546309214448591589.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/adam-cli.TransformFeaturesSuite2546309214448591589.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/adam-cli.TransformFeaturesSuite2546309214448591589.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/adam-cli.TransformFeaturesSuite2546309214448591589.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/adam-cli.TransformFeaturesSuite2546309214448591589.adam/_metadata /tmp/adamTestMvnb0spyFX/adam-cli.TransformFeaturesSuite2546309214448591589.adam/_samples.avro /tmp/adamTestMvnb0spyFX/adam-cli.TransformFeaturesSuite2546309214448591589.adam/_common_metadata /tmp/adamTestMvnb0spyFX/adam-cli.TransformFeaturesSuite2546309214448591589.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/adam-cli.TransformFeaturesSuite2546309214448591589.adam/_references.avro /tmp/adamTestMvnb0spyFX/adam-cli.TransformFeaturesSuite2546309214448591589.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite1648057280319894029 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite2131915593725705992 /tmp/adamTestMvnb0spyFX/TempSuite5351184227448246815.adam /tmp/adamTestMvnb0spyFX/TempSuite5351184227448246815.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite5351184227448246815.adam/part-r-00001.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite5351184227448246815.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite5351184227448246815.adam/part-r-00002.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite5351184227448246815.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite5351184227448246815.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite5351184227448246815.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite5351184227448246815.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite5351184227448246815.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite5351184227448246815.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite5351184227448246815.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite5351184227448246815.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite5351184227448246815.adam/_samples.avro /tmp/adamTestMvnb0spyFX/TempSuite5351184227448246815.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite5351184227448246815.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite5351184227448246815.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite5351184227448246815.adam/part-r-00003.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite5351184227448246815.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite3080188816596709591.bam /tmp/adamTestMvnb0spyFX/TempSuite3080188816596709591.bam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite3080188816596709591.bam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite3080188816596709591.bam/.part-r-00000.bam.crc /tmp/adamTestMvnb0spyFX/TempSuite3080188816596709591.bam/part-r-00000.bam /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite4128773344872962695.bed /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite4128773344872962695.bed/.part-00001.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite4128773344872962695.bed/.part-00003.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite4128773344872962695.bed/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite4128773344872962695.bed/part-00003 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite4128773344872962695.bed/.part-00000.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite4128773344872962695.bed/part-00000 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite4128773344872962695.bed/part-00002 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite4128773344872962695.bed/_SUCCESS /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite4128773344872962695.bed/part-00001 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite4128773344872962695.bed/.part-00002.crc /tmp/adamTestMvnb0spyFX/2801028059633489887 /tmp/adamTestMvnb0spyFX/2801028059633489887/binned.adam /tmp/adamTestMvnb0spyFX/2801028059633489887/binned.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/2801028059633489887/binned.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/2801028059633489887/binned.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/2801028059633489887/binned.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/2801028059633489887/binned.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/2801028059633489887/binned.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/2801028059633489887/binned.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/2801028059633489887/binned.adam/_metadata /tmp/adamTestMvnb0spyFX/2801028059633489887/binned.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/2801028059633489887/binned.adam/_common_metadata /tmp/adamTestMvnb0spyFX/2801028059633489887/binned.adam/_references.avro /tmp/adamTestMvnb0spyFX/2801028059633489887/binned.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/2801028059633489887/binned.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/2801028059633489887/binned.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite4905364437222019019 /tmp/adamTestMvnb0spyFX/1757928578224910382 /tmp/adamTestMvnb0spyFX/1757928578224910382/genotypes.adam /tmp/adamTestMvnb0spyFX/1757928578224910382/genotypes.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/1757928578224910382/genotypes.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/1757928578224910382/genotypes.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/1757928578224910382/genotypes.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/1757928578224910382/genotypes.adam/._header.crc /tmp/adamTestMvnb0spyFX/1757928578224910382/genotypes.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/1757928578224910382/genotypes.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/1757928578224910382/genotypes.adam/_metadata /tmp/adamTestMvnb0spyFX/1757928578224910382/genotypes.adam/_samples.avro /tmp/adamTestMvnb0spyFX/1757928578224910382/genotypes.adam/_common_metadata /tmp/adamTestMvnb0spyFX/1757928578224910382/genotypes.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/1757928578224910382/genotypes.adam/_references.avro /tmp/adamTestMvnb0spyFX/1757928578224910382/genotypes.adam/_header /tmp/adamTestMvnb0spyFX/1757928578224910382/genotypes.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/.TempSuite3615595344287274399.bam.crc /tmp/adamTestMvnb0spyFX/TempSuite8881417049216950212.adam /tmp/adamTestMvnb0spyFX/TempSuite8881417049216950212.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite8881417049216950212.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite8881417049216950212.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite8881417049216950212.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite8881417049216950212.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite8881417049216950212.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite8881417049216950212.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite8881417049216950212.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite8881417049216950212.adam/_samples.avro /tmp/adamTestMvnb0spyFX/TempSuite8881417049216950212.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite8881417049216950212.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite8881417049216950212.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite8881417049216950212.adam/_header /tmp/adamTestMvnb0spyFX/TempSuite8881417049216950212.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/random.vcf1783500571000615887.vcf /tmp/adamTestMvnb0spyFX/TempSuite7901277110317999825 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite7803369312697842486 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite8676399588537632306.interval_list /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite8676399588537632306.interval_list/.part-00001.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite8676399588537632306.interval_list/.part-00003.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite8676399588537632306.interval_list/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite8676399588537632306.interval_list/part-00003 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite8676399588537632306.interval_list/.part-00000.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite8676399588537632306.interval_list/part-00000 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite8676399588537632306.interval_list/part-00002 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite8676399588537632306.interval_list/_SUCCESS /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite8676399588537632306.interval_list/part-00001 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite8676399588537632306.interval_list/.part-00002.crc /tmp/adamTestMvnb0spyFX/unordered.sam8986870996431188717.sam /tmp/adamTestMvnb0spyFX/SliceDatasetSuite4464920764036357503 /tmp/adamTestMvnb0spyFX/ReadDatasetSuite7323903841268443776 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite7895400967893126682.gtf /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite7895400967893126682.gtf/.part-00001.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite7895400967893126682.gtf/.part-00003.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite7895400967893126682.gtf/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite7895400967893126682.gtf/part-00003 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite7895400967893126682.gtf/.part-00000.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite7895400967893126682.gtf/part-00000 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite7895400967893126682.gtf/part-00002 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite7895400967893126682.gtf/_SUCCESS /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite7895400967893126682.gtf/part-00001 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite7895400967893126682.gtf/.part-00002.crc /tmp/adamTestMvnb0spyFX/TempSuite1613339373958306222 /tmp/adamTestMvnb0spyFX/ordered.sam7359638926865845735.sam /tmp/adamTestMvnb0spyFX/.FeatureDatasetFunctionsSuite78092404543370815.narrowPeak.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite3679370580240936990.gff3 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite3679370580240936990.gff3/.part-00001.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite3679370580240936990.gff3/.part-00003.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite3679370580240936990.gff3/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite3679370580240936990.gff3/part-00003 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite3679370580240936990.gff3/.part-00000.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite3679370580240936990.gff3/part-00000 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite3679370580240936990.gff3/part-00002 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite3679370580240936990.gff3/_SUCCESS /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite3679370580240936990.gff3/part-00001 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite3679370580240936990.gff3/.part-00002.crc /tmp/adamTestMvnb0spyFX/1567623244090-0 /tmp/adamTestMvnb0spyFX/1567623244090-0/bamReads.adam /tmp/adamTestMvnb0spyFX/1567623244090-0/bamReads.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/1567623244090-0/bamReads.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/1567623244090-0/bamReads.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/1567623244090-0/bamReads.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/1567623244090-0/bamReads.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/1567623244090-0/bamReads.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/1567623244090-0/bamReads.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/1567623244090-0/bamReads.adam/_metadata /tmp/adamTestMvnb0spyFX/1567623244090-0/bamReads.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/1567623244090-0/bamReads.adam/_common_metadata /tmp/adamTestMvnb0spyFX/1567623244090-0/bamReads.adam/_references.avro /tmp/adamTestMvnb0spyFX/1567623244090-0/bamReads.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/1567623244090-0/bamReads.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/1567623244090-0/bamReads.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite7899441064088163536 /tmp/adamTestMvnb0spyFX/TempSuite4928697800950263003.adam /tmp/adamTestMvnb0spyFX/TempSuite4928697800950263003.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite4928697800950263003.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite4928697800950263003.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite4928697800950263003.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite4928697800950263003.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite4928697800950263003.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite4928697800950263003.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite4928697800950263003.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite4928697800950263003.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite4928697800950263003.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite446050026265383886 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite1711729321473319794.interval_list /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite1711729321473319794.interval_list/.part-00001.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite1711729321473319794.interval_list/.part-00003.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite1711729321473319794.interval_list/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite1711729321473319794.interval_list/part-00003 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite1711729321473319794.interval_list/.part-00000.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite1711729321473319794.interval_list/part-00000 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite1711729321473319794.interval_list/part-00002 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite1711729321473319794.interval_list/_SUCCESS /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite1711729321473319794.interval_list/part-00001 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite1711729321473319794.interval_list/.part-00002.crc /tmp/adamTestMvnb0spyFX/TempSuite5464574539131685954.adam /tmp/adamTestMvnb0spyFX/TempSuite5464574539131685954.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite5464574539131685954.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite5464574539131685954.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite5464574539131685954.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite5464574539131685954.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite5464574539131685954.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite5464574539131685954.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite5464574539131685954.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite5464574539131685954.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite5464574539131685954.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite7652776886456979321 /tmp/adamTestMvnb0spyFX/.FeatureDatasetFunctionsSuite6290077453156478091.bed.crc /tmp/adamTestMvnb0spyFX/.TempSuite280989017013718100.fq.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite5389574961379192399 /tmp/adamTestMvnb0spyFX/TempSuite6492713183736671984.adam /tmp/adamTestMvnb0spyFX/TempSuite6492713183736671984.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite6492713183736671984.adam/part-00003-5549493a-53ba-4d4a-88f8-62157c56db12-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite6492713183736671984.adam/part-00005-5549493a-53ba-4d4a-88f8-62157c56db12-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite6492713183736671984.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite6492713183736671984.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite6492713183736671984.adam/_samples.avro /tmp/adamTestMvnb0spyFX/TempSuite6492713183736671984.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite6492713183736671984.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite6492713183736671984.adam/.part-00003-5549493a-53ba-4d4a-88f8-62157c56db12-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite6492713183736671984.adam/.part-00005-5549493a-53ba-4d4a-88f8-62157c56db12-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite6492713183736671984.adam/.part-00000-5549493a-53ba-4d4a-88f8-62157c56db12-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite6492713183736671984.adam/part-00000-5549493a-53ba-4d4a-88f8-62157c56db12-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite3804408563827794035 /tmp/adamTestMvnb0spyFX/TempSuite9139646124206219871 /tmp/adamTestMvnb0spyFX/TempSuite8753789257834493749 /tmp/adamTestMvnb0spyFX/javaAC1315062588807718311 /tmp/adamTestMvnb0spyFX/javaAC1315062588807718311/testRdd.fragment.adam /tmp/adamTestMvnb0spyFX/javaAC1315062588807718311/testRdd.fragment.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/javaAC1315062588807718311/testRdd.fragment.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/javaAC1315062588807718311/testRdd.fragment.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/javaAC1315062588807718311/testRdd.fragment.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/javaAC1315062588807718311/testRdd.fragment.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/javaAC1315062588807718311/testRdd.fragment.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/javaAC1315062588807718311/testRdd.fragment.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/javaAC1315062588807718311/testRdd.fragment.adam/_metadata /tmp/adamTestMvnb0spyFX/javaAC1315062588807718311/testRdd.fragment.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/javaAC1315062588807718311/testRdd.fragment.adam/_common_metadata /tmp/adamTestMvnb0spyFX/javaAC1315062588807718311/testRdd.fragment.adam/_references.avro /tmp/adamTestMvnb0spyFX/javaAC1315062588807718311/testRdd.fragment.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/javaAC1315062588807718311/testRdd.fragment.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/javaAC1315062588807718311/testRdd.fragment.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/reads127663954529641024118 /tmp/adamTestMvnb0spyFX/reads127663954529641024118/reads12.fq /tmp/adamTestMvnb0spyFX/reads127663954529641024118/reads12.fq/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/reads127663954529641024118/reads12.fq/.part-00000.crc /tmp/adamTestMvnb0spyFX/reads127663954529641024118/reads12.fq/part-00000 /tmp/adamTestMvnb0spyFX/reads127663954529641024118/reads12.fq/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite3143468334918861887.adam /tmp/adamTestMvnb0spyFX/TempSuite3143468334918861887.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite3143468334918861887.adam/part-00000-a9b2572e-ba02-4be0-b7cf-de45a4deeacb-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite3143468334918861887.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite3143468334918861887.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite3143468334918861887.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite3143468334918861887.adam/.part-00000-a9b2572e-ba02-4be0-b7cf-de45a4deeacb-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite3143468334918861887.adam/_samples.avro /tmp/adamTestMvnb0spyFX/TempSuite3143468334918861887.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite3143468334918861887.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite3143468334918861887.adam/_header /tmp/adamTestMvnb0spyFX/trinity.fa933144079504829429.fa /tmp/adamTestMvnb0spyFX/TempSuite5069529387952670805.adam /tmp/adamTestMvnb0spyFX/TempSuite5069529387952670805.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite5069529387952670805.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite5069529387952670805.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite5069529387952670805.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite5069529387952670805.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite5069529387952670805.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite5069529387952670805.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite5069529387952670805.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite5069529387952670805.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite5069529387952670805.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite3124670947848960004.adam /tmp/adamTestMvnb0spyFX/TempSuite3124670947848960004.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite3124670947848960004.adam/part-r-00001.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite3124670947848960004.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite3124670947848960004.adam/part-r-00002.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite3124670947848960004.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite3124670947848960004.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite3124670947848960004.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite3124670947848960004.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite3124670947848960004.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite3124670947848960004.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite3124670947848960004.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite3124670947848960004.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite3124670947848960004.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite3124670947848960004.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite3124670947848960004.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite3124670947848960004.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite3124670947848960004.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/TempSuite3124670947848960004.adam/part-r-00003.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite3124670947848960004.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/TempSuite3124670947848960004.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite8059270578530962275.adam /tmp/adamTestMvnb0spyFX/TempSuite8059270578530962275.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite8059270578530962275.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite8059270578530962275.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite8059270578530962275.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite8059270578530962275.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite8059270578530962275.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite8059270578530962275.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite8059270578530962275.adam/_samples.avro /tmp/adamTestMvnb0spyFX/TempSuite8059270578530962275.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite8059270578530962275.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite8059270578530962275.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite8059270578530962275.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/5860978564413249148 /tmp/adamTestMvnb0spyFX/5860978564413249148/sorted-variants.vcf /tmp/adamTestMvnb0spyFX/5860978564413249148/.sorted-variants.vcf.crc /tmp/adamTestMvnb0spyFX/TempSuite1206695266723538973 /tmp/adamTestMvnb0spyFX/TempSuite6452549729766034423.adam /tmp/adamTestMvnb0spyFX/TempSuite6452549729766034423.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite6452549729766034423.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite6452549729766034423.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite6452549729766034423.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite6452549729766034423.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite6452549729766034423.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite6452549729766034423.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite6452549729766034423.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite6452549729766034423.adam/_samples.avro /tmp/adamTestMvnb0spyFX/TempSuite6452549729766034423.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite6452549729766034423.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite6452549729766034423.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite6452549729766034423.adam/_header /tmp/adamTestMvnb0spyFX/TempSuite6452549729766034423.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite3838475636781836996.adam /tmp/adamTestMvnb0spyFX/TempSuite3838475636781836996.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite3838475636781836996.adam/part-r-00001.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite3838475636781836996.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite3838475636781836996.adam/part-r-00002.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite3838475636781836996.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite3838475636781836996.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite3838475636781836996.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite3838475636781836996.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite3838475636781836996.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite3838475636781836996.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite3838475636781836996.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite3838475636781836996.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite3838475636781836996.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite3838475636781836996.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite3838475636781836996.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite3838475636781836996.adam/part-r-00003.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite3838475636781836996.adam/_header /tmp/adamTestMvnb0spyFX/TempSuite3838475636781836996.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite465424534155886512.interval_list /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite465424534155886512.interval_list/.part-00001.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite465424534155886512.interval_list/.part-00003.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite465424534155886512.interval_list/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite465424534155886512.interval_list/part-00003 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite465424534155886512.interval_list/.part-00000.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite465424534155886512.interval_list/part-00000 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite465424534155886512.interval_list/part-00002 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite465424534155886512.interval_list/_SUCCESS /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite465424534155886512.interval_list/part-00001 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite465424534155886512.interval_list/.part-00002.crc /tmp/adamTestMvnb0spyFX/1567622436089-0 /tmp/adamTestMvnb0spyFX/1567622436089-0/.test.gvcf.vcf.crc /tmp/adamTestMvnb0spyFX/1567622436089-0/test.gvcf.vcf /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite3696752059678055228 /tmp/adamTestMvnb0spyFX/TempSuite1021165447068640204.adam /tmp/adamTestMvnb0spyFX/TempSuite1021165447068640204.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite1021165447068640204.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite1021165447068640204.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite1021165447068640204.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite1021165447068640204.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite1021165447068640204.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite1021165447068640204.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite1021165447068640204.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite1021165447068640204.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite1021165447068640204.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite1021165447068640204.adam/_header /tmp/adamTestMvnb0spyFX/TempSuite1021165447068640204.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite6022208563566613211 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite1188083009041797821 /tmp/adamTestMvnb0spyFX/TempSuite5989558499537016408 /tmp/adamTestMvnb0spyFX/TempSuite5726080030383348091 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite3708021435093289745 /tmp/adamTestMvnb0spyFX/TempSuite5499920943398800915.bed /tmp/adamTestMvnb0spyFX/TempSuite5499920943398800915.bed/.part-00001.crc /tmp/adamTestMvnb0spyFX/TempSuite5499920943398800915.bed/.part-00003.crc /tmp/adamTestMvnb0spyFX/TempSuite5499920943398800915.bed/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite5499920943398800915.bed/part-00003 /tmp/adamTestMvnb0spyFX/TempSuite5499920943398800915.bed/.part-00000.crc /tmp/adamTestMvnb0spyFX/TempSuite5499920943398800915.bed/part-00000 /tmp/adamTestMvnb0spyFX/TempSuite5499920943398800915.bed/part-00002 /tmp/adamTestMvnb0spyFX/TempSuite5499920943398800915.bed/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite5499920943398800915.bed/part-00001 /tmp/adamTestMvnb0spyFX/TempSuite5499920943398800915.bed/.part-00002.crc /tmp/adamTestMvnb0spyFX/5466622089684582446 /tmp/adamTestMvnb0spyFX/5466622089684582446/genotypes.adam /tmp/adamTestMvnb0spyFX/5466622089684582446/genotypes.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/5466622089684582446/genotypes.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/5466622089684582446/genotypes.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/5466622089684582446/genotypes.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/5466622089684582446/genotypes.adam/._header.crc /tmp/adamTestMvnb0spyFX/5466622089684582446/genotypes.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/5466622089684582446/genotypes.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/5466622089684582446/genotypes.adam/_metadata /tmp/adamTestMvnb0spyFX/5466622089684582446/genotypes.adam/_samples.avro /tmp/adamTestMvnb0spyFX/5466622089684582446/genotypes.adam/_common_metadata /tmp/adamTestMvnb0spyFX/5466622089684582446/genotypes.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/5466622089684582446/genotypes.adam/_references.avro /tmp/adamTestMvnb0spyFX/5466622089684582446/genotypes.adam/_header /tmp/adamTestMvnb0spyFX/5466622089684582446/genotypes.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite5077908859890504286.adam /tmp/adamTestMvnb0spyFX/TempSuite5077908859890504286.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite5077908859890504286.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite5077908859890504286.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite5077908859890504286.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite5077908859890504286.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite5077908859890504286.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite5077908859890504286.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite5077908859890504286.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite5077908859890504286.adam/_samples.avro /tmp/adamTestMvnb0spyFX/TempSuite5077908859890504286.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite5077908859890504286.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite5077908859890504286.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite5077908859890504286.adam/_header /tmp/adamTestMvnb0spyFX/TempSuite5077908859890504286.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite8724951185837458359 /tmp/adamTestMvnb0spyFX/TempSuite8656932091009832252.adam /tmp/adamTestMvnb0spyFX/TempSuite8656932091009832252.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite8656932091009832252.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite8656932091009832252.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite8656932091009832252.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite8656932091009832252.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite8656932091009832252.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite8656932091009832252.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite8656932091009832252.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite8656932091009832252.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite8656932091009832252.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite8656932091009832252.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite8656932091009832252.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/TempSuite8656932091009832252.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/TempSuite8656932091009832252.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/.TempSuite6879935168662692333.sam.crc /tmp/adamTestMvnb0spyFX/TempSuite1613339373958306222.adam /tmp/adamTestMvnb0spyFX/TempSuite1613339373958306222.adam/part-00001-21607924-4767-4439-8b26-cd22f373e28b-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite1613339373958306222.adam/.part-00000-21607924-4767-4439-8b26-cd22f373e28b-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite1613339373958306222.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite1613339373958306222.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite1613339373958306222.adam/.part-00002-21607924-4767-4439-8b26-cd22f373e28b-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite1613339373958306222.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite1613339373958306222.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite1613339373958306222.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite1613339373958306222.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite1613339373958306222.adam/part-00002-21607924-4767-4439-8b26-cd22f373e28b-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite1613339373958306222.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/TempSuite1613339373958306222.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/TempSuite1613339373958306222.adam/.part-00001-21607924-4767-4439-8b26-cd22f373e28b-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite1613339373958306222.adam/part-00000-21607924-4767-4439-8b26-cd22f373e28b-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite1906775885009806924 /tmp/adamTestMvnb0spyFX/SliceDatasetSuite4189848396067223870 /tmp/adamTestMvnb0spyFX/unordered.sam7620176023692076749.sam /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite5894452762882457097.bed /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite5894452762882457097.bed/.part-00001.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite5894452762882457097.bed/.part-00003.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite5894452762882457097.bed/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite5894452762882457097.bed/part-00003 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite5894452762882457097.bed/.part-00000.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite5894452762882457097.bed/part-00000 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite5894452762882457097.bed/part-00002 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite5894452762882457097.bed/_SUCCESS /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite5894452762882457097.bed/part-00001 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite5894452762882457097.bed/.part-00002.crc /tmp/adamTestMvnb0spyFX/TempSuite8649239163587385585 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite5337959601903487058 /tmp/adamTestMvnb0spyFX/TempSuite2313998342944399594.bam /tmp/adamTestMvnb0spyFX/TempSuite2313998342944399594.bam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite2313998342944399594.bam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite2313998342944399594.bam/.part-r-00000.bam.crc /tmp/adamTestMvnb0spyFX/TempSuite2313998342944399594.bam/part-r-00000.bam /tmp/adamTestMvnb0spyFX/TempSuite29037166354233401.adam /tmp/adamTestMvnb0spyFX/TempSuite29037166354233401.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite29037166354233401.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite29037166354233401.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite29037166354233401.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite29037166354233401.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite29037166354233401.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite29037166354233401.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite29037166354233401.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite29037166354233401.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite29037166354233401.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite2561152622430288041.adam /tmp/adamTestMvnb0spyFX/TempSuite2561152622430288041.adam/referenceName=13 /tmp/adamTestMvnb0spyFX/TempSuite2561152622430288041.adam/referenceName=13/positionBin=0 /tmp/adamTestMvnb0spyFX/TempSuite2561152622430288041.adam/referenceName=13/positionBin=0/.part-00000-756d8970-5521-4afb-9a17-232218e1330f.c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite2561152622430288041.adam/referenceName=13/positionBin=0/part-00000-756d8970-5521-4afb-9a17-232218e1330f.c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite2561152622430288041.adam/referenceName=2 /tmp/adamTestMvnb0spyFX/TempSuite2561152622430288041.adam/referenceName=2/positionBin=0 /tmp/adamTestMvnb0spyFX/TempSuite2561152622430288041.adam/referenceName=2/positionBin=0/.part-00000-756d8970-5521-4afb-9a17-232218e1330f.c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite2561152622430288041.adam/referenceName=2/positionBin=0/part-00000-756d8970-5521-4afb-9a17-232218e1330f.c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite2561152622430288041.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite2561152622430288041.adam/._partitionedByStartPos.crc /tmp/adamTestMvnb0spyFX/TempSuite2561152622430288041.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite2561152622430288041.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite2561152622430288041.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite2561152622430288041.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite2561152622430288041.adam/referenceName=1 /tmp/adamTestMvnb0spyFX/TempSuite2561152622430288041.adam/referenceName=1/positionBin=0 /tmp/adamTestMvnb0spyFX/TempSuite2561152622430288041.adam/referenceName=1/positionBin=0/.part-00000-756d8970-5521-4afb-9a17-232218e1330f.c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite2561152622430288041.adam/referenceName=1/positionBin=0/part-00000-756d8970-5521-4afb-9a17-232218e1330f.c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite2561152622430288041.adam/_header /tmp/adamTestMvnb0spyFX/TempSuite2561152622430288041.adam/_partitionedByStartPos /tmp/adamTestMvnb0spyFX/TempSuite8636781702640023727 /tmp/adamTestMvnb0spyFX/TempSuite5459740649236423241 /tmp/adamTestMvnb0spyFX/829607103912365335 /tmp/adamTestMvnb0spyFX/829607103912365335/unordered.adam /tmp/adamTestMvnb0spyFX/829607103912365335/unordered.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/829607103912365335/unordered.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/829607103912365335/unordered.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/829607103912365335/unordered.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/829607103912365335/unordered.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/829607103912365335/unordered.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/829607103912365335/unordered.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/829607103912365335/unordered.adam/_metadata /tmp/adamTestMvnb0spyFX/829607103912365335/unordered.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/829607103912365335/unordered.adam/_common_metadata /tmp/adamTestMvnb0spyFX/829607103912365335/unordered.adam/_references.avro /tmp/adamTestMvnb0spyFX/829607103912365335/unordered.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/829607103912365335/unordered.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/829607103912365335/unordered.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite218345194067302476.adam /tmp/adamTestMvnb0spyFX/TempSuite218345194067302476.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite218345194067302476.adam/part-r-00001.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite218345194067302476.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite218345194067302476.adam/part-r-00002.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite218345194067302476.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite218345194067302476.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite218345194067302476.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite218345194067302476.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite218345194067302476.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite218345194067302476.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite218345194067302476.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite218345194067302476.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite218345194067302476.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite218345194067302476.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite218345194067302476.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite218345194067302476.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite218345194067302476.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/TempSuite218345194067302476.adam/part-r-00003.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite218345194067302476.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/TempSuite218345194067302476.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite5122779391457154023.bed /tmp/adamTestMvnb0spyFX/TempSuite5122779391457154023.bed/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite5122779391457154023.bed/.part-00000.crc /tmp/adamTestMvnb0spyFX/TempSuite5122779391457154023.bed/part-00000 /tmp/adamTestMvnb0spyFX/TempSuite5122779391457154023.bed/_SUCCESS /tmp/adamTestMvnb0spyFX/SliceDatasetSuite8684065245750119891 /tmp/adamTestMvnb0spyFX/unordered.sam6152405284432161688.sam /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite6327399194647749912 /tmp/adamTestMvnb0spyFX/TempSuite3163272534508345781.fq /tmp/adamTestMvnb0spyFX/TempSuite3163272534508345781.fq/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite3163272534508345781.fq/.part-00000.crc /tmp/adamTestMvnb0spyFX/TempSuite3163272534508345781.fq/part-00000 /tmp/adamTestMvnb0spyFX/TempSuite3163272534508345781.fq/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite6505127533746944367.adam /tmp/adamTestMvnb0spyFX/TempSuite6505127533746944367.adam/referenceName=2 /tmp/adamTestMvnb0spyFX/TempSuite6505127533746944367.adam/referenceName=2/positionBin=189 /tmp/adamTestMvnb0spyFX/TempSuite6505127533746944367.adam/referenceName=2/positionBin=189/.part-00000-7068b4e6-d02b-4bf1-854b-c71d5e33379c.c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite6505127533746944367.adam/referenceName=2/positionBin=189/part-00000-7068b4e6-d02b-4bf1-854b-c71d5e33379c.c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite6505127533746944367.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite6505127533746944367.adam/._partitionedByStartPos.crc /tmp/adamTestMvnb0spyFX/TempSuite6505127533746944367.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite6505127533746944367.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite6505127533746944367.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite6505127533746944367.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite6505127533746944367.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite6505127533746944367.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/TempSuite6505127533746944367.adam/referenceName=1 /tmp/adamTestMvnb0spyFX/TempSuite6505127533746944367.adam/referenceName=1/positionBin=26 /tmp/adamTestMvnb0spyFX/TempSuite6505127533746944367.adam/referenceName=1/positionBin=26/.part-00000-7068b4e6-d02b-4bf1-854b-c71d5e33379c.c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite6505127533746944367.adam/referenceName=1/positionBin=26/part-00000-7068b4e6-d02b-4bf1-854b-c71d5e33379c.c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite6505127533746944367.adam/referenceName=1/positionBin=240 /tmp/adamTestMvnb0spyFX/TempSuite6505127533746944367.adam/referenceName=1/positionBin=240/.part-00000-7068b4e6-d02b-4bf1-854b-c71d5e33379c.c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite6505127533746944367.adam/referenceName=1/positionBin=240/part-00000-7068b4e6-d02b-4bf1-854b-c71d5e33379c.c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite6505127533746944367.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/TempSuite6505127533746944367.adam/_partitionedByStartPos /tmp/adamTestMvnb0spyFX/TempSuite4048919289480877947 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite1648057280319894029.gff3 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite1648057280319894029.gff3/.part-00001.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite1648057280319894029.gff3/.part-00003.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite1648057280319894029.gff3/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite1648057280319894029.gff3/part-00003 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite1648057280319894029.gff3/.part-00000.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite1648057280319894029.gff3/part-00000 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite1648057280319894029.gff3/part-00002 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite1648057280319894029.gff3/_SUCCESS /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite1648057280319894029.gff3/part-00001 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite1648057280319894029.gff3/.part-00002.crc /tmp/adamTestMvnb0spyFX/.FeatureDatasetFunctionsSuite8948463691720557949.bed.crc /tmp/adamTestMvnb0spyFX/TempSuite430391504201395559.adam /tmp/adamTestMvnb0spyFX/TempSuite430391504201395559.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite430391504201395559.adam/part-r-00001.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite430391504201395559.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite430391504201395559.adam/part-r-00002.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite430391504201395559.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite430391504201395559.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite430391504201395559.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite430391504201395559.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite430391504201395559.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite430391504201395559.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite430391504201395559.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite430391504201395559.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite430391504201395559.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite430391504201395559.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite430391504201395559.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite430391504201395559.adam/part-r-00003.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite430391504201395559.adam/_header /tmp/adamTestMvnb0spyFX/TempSuite430391504201395559.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite1874933644947150351_1.fq /tmp/adamTestMvnb0spyFX/6699911014515758301 /tmp/adamTestMvnb0spyFX/6699911014515758301/genotypes.nested-annotations.adam /tmp/adamTestMvnb0spyFX/6699911014515758301/genotypes.nested-annotations.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/6699911014515758301/genotypes.nested-annotations.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/6699911014515758301/genotypes.nested-annotations.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/6699911014515758301/genotypes.nested-annotations.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/6699911014515758301/genotypes.nested-annotations.adam/._header.crc /tmp/adamTestMvnb0spyFX/6699911014515758301/genotypes.nested-annotations.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/6699911014515758301/genotypes.nested-annotations.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/6699911014515758301/genotypes.nested-annotations.adam/_metadata /tmp/adamTestMvnb0spyFX/6699911014515758301/genotypes.nested-annotations.adam/_samples.avro /tmp/adamTestMvnb0spyFX/6699911014515758301/genotypes.nested-annotations.adam/_common_metadata /tmp/adamTestMvnb0spyFX/6699911014515758301/genotypes.nested-annotations.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/6699911014515758301/genotypes.nested-annotations.adam/_references.avro /tmp/adamTestMvnb0spyFX/6699911014515758301/genotypes.nested-annotations.adam/_header /tmp/adamTestMvnb0spyFX/6699911014515758301/genotypes.nested-annotations.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite1033475186718774909.fq /tmp/adamTestMvnb0spyFX/TempSuite1033475186718774909.fq/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite1033475186718774909.fq/.part-00000.crc /tmp/adamTestMvnb0spyFX/TempSuite1033475186718774909.fq/part-00000 /tmp/adamTestMvnb0spyFX/TempSuite1033475186718774909.fq/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite8636781702640023727.adam /tmp/adamTestMvnb0spyFX/TempSuite8636781702640023727.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite8636781702640023727.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite8636781702640023727.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite8636781702640023727.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite8636781702640023727.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite8636781702640023727.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite8636781702640023727.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite8636781702640023727.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite8636781702640023727.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite8636781702640023727.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite8636781702640023727.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite8636781702640023727.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/TempSuite8636781702640023727.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/TempSuite8636781702640023727.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite8069595094360631386 /tmp/adamTestMvnb0spyFX/TempSuite2404298527513613635.bed /tmp/adamTestMvnb0spyFX/TempSuite2404298527513613635.bed/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite2404298527513613635.bed/.part-00000.crc /tmp/adamTestMvnb0spyFX/TempSuite2404298527513613635.bed/part-00000 /tmp/adamTestMvnb0spyFX/TempSuite2404298527513613635.bed/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite694839562576727495.adam /tmp/adamTestMvnb0spyFX/TempSuite694839562576727495.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite694839562576727495.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite694839562576727495.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite694839562576727495.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite694839562576727495.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite694839562576727495.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite694839562576727495.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite694839562576727495.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite694839562576727495.adam/_samples.avro /tmp/adamTestMvnb0spyFX/TempSuite694839562576727495.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite694839562576727495.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite694839562576727495.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite694839562576727495.adam/_header /tmp/adamTestMvnb0spyFX/TempSuite694839562576727495.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/.FeatureDatasetFunctionsSuite4024925401560411753.interval_list.crc /tmp/adamTestMvnb0spyFX/TempSuite7256115861911031006_1.fq /tmp/adamTestMvnb0spyFX/TempSuite7256115861911031006_1.fq/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite7256115861911031006_1.fq/.part-00000.crc /tmp/adamTestMvnb0spyFX/TempSuite7256115861911031006_1.fq/part-00000 /tmp/adamTestMvnb0spyFX/TempSuite7256115861911031006_1.fq/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite216592759625590601 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite2121434685766622262 /tmp/adamTestMvnb0spyFX/TempSuite2662811578720574061 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite437833064469313985.narrowPeak /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite437833064469313985.narrowPeak/.part-00001.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite437833064469313985.narrowPeak/.part-00003.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite437833064469313985.narrowPeak/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite437833064469313985.narrowPeak/part-00003 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite437833064469313985.narrowPeak/.part-00000.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite437833064469313985.narrowPeak/part-00000 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite437833064469313985.narrowPeak/part-00002 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite437833064469313985.narrowPeak/_SUCCESS /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite437833064469313985.narrowPeak/part-00001 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite437833064469313985.narrowPeak/.part-00002.crc /tmp/adamTestMvnb0spyFX/.TempSuite4765131985617864125_2.fq.crc /tmp/adamTestMvnb0spyFX/TempSuite6879935168662692333.sam /tmp/adamTestMvnb0spyFX/TempSuite3189680717339125351 /tmp/adamTestMvnb0spyFX/TempSuite4462011021348515644.bed /tmp/adamTestMvnb0spyFX/TempSuite4462011021348515644.bed/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite4462011021348515644.bed/.part-00000.crc /tmp/adamTestMvnb0spyFX/TempSuite4462011021348515644.bed/part-00000 /tmp/adamTestMvnb0spyFX/TempSuite4462011021348515644.bed/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite5273812807202368426.adam /tmp/adamTestMvnb0spyFX/TempSuite5273812807202368426.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite5273812807202368426.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite5273812807202368426.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite5273812807202368426.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite5273812807202368426.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite5273812807202368426.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite5273812807202368426.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite5273812807202368426.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite5273812807202368426.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite5273812807202368426.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite5273812807202368426.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite5273812807202368426.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/TempSuite5273812807202368426.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/TempSuite5273812807202368426.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite8711158077592442580 /tmp/adamTestMvnb0spyFX/TempSuite5960320404444248300.adam /tmp/adamTestMvnb0spyFX/TempSuite5960320404444248300.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite5960320404444248300.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite5960320404444248300.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite5960320404444248300.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite5960320404444248300.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite5960320404444248300.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite5960320404444248300.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite5960320404444248300.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite5960320404444248300.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite5960320404444248300.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite5960320404444248300.adam/_header /tmp/adamTestMvnb0spyFX/TempSuite5960320404444248300.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite700548760482694108 /tmp/adamTestMvnb0spyFX/TempSuite5862398345810313642 /tmp/adamTestMvnb0spyFX/TempSuite3780836668371200176 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite7950550038912313700.gtf /tmp/adamTestMvnb0spyFX/TempSuite410846537093015666.adam /tmp/adamTestMvnb0spyFX/TempSuite410846537093015666.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite410846537093015666.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite410846537093015666.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite410846537093015666.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite410846537093015666.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite410846537093015666.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite410846537093015666.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite410846537093015666.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite410846537093015666.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite410846537093015666.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite4810999506415815297.adam /tmp/adamTestMvnb0spyFX/TempSuite4810999506415815297.adam/.part-00001-810d603d-1c7c-49af-98f5-daa0f9086b88-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite4810999506415815297.adam/.part-00000-810d603d-1c7c-49af-98f5-daa0f9086b88-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite4810999506415815297.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite4810999506415815297.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite4810999506415815297.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite4810999506415815297.adam/part-00001-810d603d-1c7c-49af-98f5-daa0f9086b88-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite4810999506415815297.adam/.part-00002-810d603d-1c7c-49af-98f5-daa0f9086b88-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite4810999506415815297.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite4810999506415815297.adam/part-00000-810d603d-1c7c-49af-98f5-daa0f9086b88-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite4810999506415815297.adam/part-00002-810d603d-1c7c-49af-98f5-daa0f9086b88-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite2326302992700599139 /tmp/adamTestMvnb0spyFX/TempSuite2498420633543449819 /tmp/adamTestMvnb0spyFX/sorted-variants.lex.vcf9059952476300975134.lex.vcf /tmp/adamTestMvnb0spyFX/TempSuite1334579999773175752 /tmp/adamTestMvnb0spyFX/TempSuite7861068334412091649 /tmp/adamTestMvnb0spyFX/TempSuite2452669463788897595 /tmp/adamTestMvnb0spyFX/small.vcf2244882936528241127.vcf /tmp/adamTestMvnb0spyFX/TempSuite8657050157540749652 /tmp/adamTestMvnb0spyFX/TempSuite700548760482694108.sam /tmp/adamTestMvnb0spyFX/TempSuite8687534868413937731.adam /tmp/adamTestMvnb0spyFX/TempSuite8687534868413937731.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite8687534868413937731.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite8687534868413937731.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite8687534868413937731.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite8687534868413937731.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite8687534868413937731.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite8687534868413937731.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite8687534868413937731.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite8687534868413937731.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite8687534868413937731.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite8687534868413937731.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite8687534868413937731.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/TempSuite8687534868413937731.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/TempSuite8687534868413937731.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite4109091595396195477.adam /tmp/adamTestMvnb0spyFX/TempSuite4109091595396195477.adam/part-00000-1508ba77-5858-43f2-92a5-62c5a21dda82-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite4109091595396195477.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite4109091595396195477.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite4109091595396195477.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite4109091595396195477.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite4109091595396195477.adam/_samples.avro /tmp/adamTestMvnb0spyFX/TempSuite4109091595396195477.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite4109091595396195477.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite4109091595396195477.adam/.part-00000-1508ba77-5858-43f2-92a5-62c5a21dda82-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite4109091595396195477.adam/_header /tmp/adamTestMvnb0spyFX/.FeatureDatasetFunctionsSuite4195308774314905096.gff3.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite3185782489762472486.bed /tmp/adamTestMvnb0spyFX/TempSuite1033475186718774909 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite5154043713494794883 /tmp/adamTestMvnb0spyFX/TempSuite9068216469798548147.adam /tmp/adamTestMvnb0spyFX/TempSuite9068216469798548147.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite9068216469798548147.adam/.part-00000-9bbf9382-97b4-40e4-a87a-bebd9573c207-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite9068216469798548147.adam/part-00000-9bbf9382-97b4-40e4-a87a-bebd9573c207-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite9068216469798548147.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite9068216469798548147.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite9068216469798548147.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite9068216469798548147.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite9068216469798548147.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite9068216469798548147.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/TempSuite9068216469798548147.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite3019859558602236433 /tmp/adamTestMvnb0spyFX/TempSuite7849583854483594190 /tmp/adamTestMvnb0spyFX/TempSuite8184291913215119168.bam /tmp/adamTestMvnb0spyFX/TempSuite5025760378891454359.bed /tmp/adamTestMvnb0spyFX/TempSuite5025760378891454359.bed/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite5025760378891454359.bed/.part-00000.crc /tmp/adamTestMvnb0spyFX/TempSuite5025760378891454359.bed/part-00000 /tmp/adamTestMvnb0spyFX/TempSuite5025760378891454359.bed/_SUCCESS /tmp/adamTestMvnb0spyFX/unordered.sam802010877620437009.sam /tmp/adamTestMvnb0spyFX/TempSuite3110249759941213739.sam /tmp/adamTestMvnb0spyFX/TempSuite3110249759941213739.sam/part-r-00000.sam /tmp/adamTestMvnb0spyFX/TempSuite3110249759941213739.sam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite3110249759941213739.sam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite3110249759941213739.sam/.part-r-00000.sam.crc /tmp/adamTestMvnb0spyFX/1323375433599615063 /tmp/adamTestMvnb0spyFX/1323375433599615063/.artificial.cram.crc /tmp/adamTestMvnb0spyFX/1323375433599615063/artificial.cram /tmp/adamTestMvnb0spyFX/random.vcf7519703340275901860.vcf /tmp/adamTestMvnb0spyFX/TempSuite3088625638637612527 /tmp/adamTestMvnb0spyFX/4698536244756964136 /tmp/adamTestMvnb0spyFX/4698536244756964136/.ordered.sam.crc /tmp/adamTestMvnb0spyFX/4698536244756964136/ordered.sam /tmp/adamTestMvnb0spyFX/TempSuite7983249371441561085.bam /tmp/adamTestMvnb0spyFX/small.vcf2812628069691018773.vcf /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite9212548649360124404.adam /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite9212548649360124404.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite9212548649360124404.adam/part-r-00001.gz.parquet /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite9212548649360124404.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite9212548649360124404.adam/part-r-00002.gz.parquet /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite9212548649360124404.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite9212548649360124404.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite9212548649360124404.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite9212548649360124404.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite9212548649360124404.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite9212548649360124404.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite9212548649360124404.adam/_metadata /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite9212548649360124404.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite9212548649360124404.adam/_common_metadata /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite9212548649360124404.adam/_references.avro /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite9212548649360124404.adam/part-r-00003.gz.parquet /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite9212548649360124404.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/.FeatureDatasetFunctionsSuite2737865839480813740.bed.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite8742577676558924496.narrowPeak /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite8742577676558924496.narrowPeak/.part-00001.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite8742577676558924496.narrowPeak/.part-00003.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite8742577676558924496.narrowPeak/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite8742577676558924496.narrowPeak/part-00003 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite8742577676558924496.narrowPeak/.part-00000.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite8742577676558924496.narrowPeak/part-00000 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite8742577676558924496.narrowPeak/part-00002 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite8742577676558924496.narrowPeak/_SUCCESS /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite8742577676558924496.narrowPeak/part-00001 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite8742577676558924496.narrowPeak/.part-00002.crc /tmp/adamTestMvnb0spyFX/TempSuite8119797644127429511.adam /tmp/adamTestMvnb0spyFX/TempSuite8119797644127429511.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite8119797644127429511.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite8119797644127429511.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite8119797644127429511.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite8119797644127429511.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite8119797644127429511.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite8119797644127429511.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite8119797644127429511.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite8119797644127429511.adam/_samples.avro /tmp/adamTestMvnb0spyFX/TempSuite8119797644127429511.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite8119797644127429511.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite8119797644127429511.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite8119797644127429511.adam/_header /tmp/adamTestMvnb0spyFX/TempSuite8119797644127429511.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite6357075162860122331.gff3 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite6357075162860122331.gff3/.part-00001.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite6357075162860122331.gff3/.part-00003.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite6357075162860122331.gff3/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite6357075162860122331.gff3/part-00003 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite6357075162860122331.gff3/.part-00000.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite6357075162860122331.gff3/part-00000 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite6357075162860122331.gff3/part-00002 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite6357075162860122331.gff3/_SUCCESS /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite6357075162860122331.gff3/part-00001 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite6357075162860122331.gff3/.part-00002.crc /tmp/adamTestMvnb0spyFX/TempSuite3088625638637612527.adam /tmp/adamTestMvnb0spyFX/TempSuite3088625638637612527.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite3088625638637612527.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite3088625638637612527.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite3088625638637612527.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite3088625638637612527.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite3088625638637612527.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite3088625638637612527.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite3088625638637612527.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite3088625638637612527.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite3088625638637612527.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite3088625638637612527.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite3088625638637612527.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/TempSuite3088625638637612527.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/TempSuite3088625638637612527.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/ReadDatasetSuite4014605438659490751.fastq /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite6290077453156478091 /tmp/adamTestMvnb0spyFX/7170311038946502292 /tmp/adamTestMvnb0spyFX/7170311038946502292/tag.sam /tmp/adamTestMvnb0spyFX/7170311038946502292/.tag.sam.crc /tmp/adamTestMvnb0spyFX/TempSuite4187671551851064268.adam /tmp/adamTestMvnb0spyFX/TempSuite4187671551851064268.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite4187671551851064268.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite4187671551851064268.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite4187671551851064268.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite4187671551851064268.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite4187671551851064268.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite4187671551851064268.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite4187671551851064268.adam/_samples.avro /tmp/adamTestMvnb0spyFX/TempSuite4187671551851064268.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite4187671551851064268.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite4187671551851064268.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite4187671551851064268.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite332130632439617767 /tmp/adamTestMvnb0spyFX/TempSuite8753789257834493749.adam /tmp/adamTestMvnb0spyFX/TempSuite8753789257834493749.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite8753789257834493749.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite8753789257834493749.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite8753789257834493749.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite8753789257834493749.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite8753789257834493749.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite8753789257834493749.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite8753789257834493749.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite8753789257834493749.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite8753789257834493749.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite8753789257834493749.adam/_header /tmp/adamTestMvnb0spyFX/TempSuite8753789257834493749.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/unordered.sam1532253457121790765.sam /tmp/adamTestMvnb0spyFX/TempSuite7472136292745126589 /tmp/adamTestMvnb0spyFX/TempSuite1830515402698601955.sam /tmp/adamTestMvnb0spyFX/TempSuite1830515402698601955.sam/part-r-00000.sam /tmp/adamTestMvnb0spyFX/TempSuite1830515402698601955.sam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite1830515402698601955.sam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite1830515402698601955.sam/.part-r-00000.sam.crc /tmp/adamTestMvnb0spyFX/3722062222994382087 /tmp/adamTestMvnb0spyFX/3722062222994382087/variants.lex.adam /tmp/adamTestMvnb0spyFX/3722062222994382087/variants.lex.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/3722062222994382087/variants.lex.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/3722062222994382087/variants.lex.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/3722062222994382087/variants.lex.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/3722062222994382087/variants.lex.adam/._header.crc /tmp/adamTestMvnb0spyFX/3722062222994382087/variants.lex.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/3722062222994382087/variants.lex.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/3722062222994382087/variants.lex.adam/_metadata /tmp/adamTestMvnb0spyFX/3722062222994382087/variants.lex.adam/_common_metadata /tmp/adamTestMvnb0spyFX/3722062222994382087/variants.lex.adam/_references.avro /tmp/adamTestMvnb0spyFX/3722062222994382087/variants.lex.adam/_header /tmp/adamTestMvnb0spyFX/3722062222994382087/variants.lex.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite3124670947848960004 /tmp/adamTestMvnb0spyFX/TempSuite3615595344287274399 /tmp/adamTestMvnb0spyFX/TempSuite8975635600992361420.sam /tmp/adamTestMvnb0spyFX/TempSuite3110249759941213739 /tmp/adamTestMvnb0spyFX/TempSuite4968106223003820690.bam /tmp/adamTestMvnb0spyFX/TempSuite4968106223003820690.bam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite4968106223003820690.bam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite4968106223003820690.bam/.part-r-00000.bam.crc /tmp/adamTestMvnb0spyFX/TempSuite4968106223003820690.bam/part-r-00000.bam /tmp/adamTestMvnb0spyFX/TempSuite7084142440379093071 /tmp/adamTestMvnb0spyFX/TempSuite879051517252859089.adam /tmp/adamTestMvnb0spyFX/TempSuite879051517252859089.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite879051517252859089.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite879051517252859089.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite879051517252859089.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite879051517252859089.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite879051517252859089.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite879051517252859089.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite879051517252859089.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite879051517252859089.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite879051517252859089.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite879051517252859089.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite879051517252859089.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/TempSuite879051517252859089.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/TempSuite879051517252859089.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite3960386088544315164 /tmp/adamTestMvnb0spyFX/SliceDatasetSuite3241447007361422577 /tmp/adamTestMvnb0spyFX/TempSuite1334579999773175752.adam /tmp/adamTestMvnb0spyFX/TempSuite1334579999773175752.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite1334579999773175752.adam/part-r-00001.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite1334579999773175752.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite1334579999773175752.adam/part-r-00002.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite1334579999773175752.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite1334579999773175752.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite1334579999773175752.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite1334579999773175752.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite1334579999773175752.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite1334579999773175752.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite1334579999773175752.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite1334579999773175752.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite1334579999773175752.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite1334579999773175752.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite1334579999773175752.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite1334579999773175752.adam/part-r-00003.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite1334579999773175752.adam/_header /tmp/adamTestMvnb0spyFX/TempSuite1334579999773175752.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/3009030257539202409 /tmp/adamTestMvnb0spyFX/3009030257539202409/.gff3 /tmp/adamTestMvnb0spyFX/3009030257539202409/..gff3.crc /tmp/adamTestMvnb0spyFX/.SequenceDatasetSuite6283135506115011959.fasta.crc /tmp/adamTestMvnb0spyFX/8398830974350773984 /tmp/adamTestMvnb0spyFX/8398830974350773984/out.bam /tmp/adamTestMvnb0spyFX/8398830974350773984/out.bam_head /tmp/adamTestMvnb0spyFX/8398830974350773984/.out.bam.crc /tmp/adamTestMvnb0spyFX/8398830974350773984/out.bam_tail /tmp/adamTestMvnb0spyFX/8398830974350773984/out.bam_tail/.part-r-00002.bam.crc /tmp/adamTestMvnb0spyFX/8398830974350773984/out.bam_tail/part-r-00002.bam /tmp/adamTestMvnb0spyFX/8398830974350773984/out.bam_tail/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/8398830974350773984/out.bam_tail/part-r-00001.bam /tmp/adamTestMvnb0spyFX/8398830974350773984/out.bam_tail/_SUCCESS /tmp/adamTestMvnb0spyFX/8398830974350773984/out.bam_tail/part-r-00003.bam /tmp/adamTestMvnb0spyFX/8398830974350773984/out.bam_tail/.part-r-00003.bam.crc /tmp/adamTestMvnb0spyFX/8398830974350773984/out.bam_tail/.part-r-00000.bam.crc /tmp/adamTestMvnb0spyFX/8398830974350773984/out.bam_tail/part-r-00000.bam /tmp/adamTestMvnb0spyFX/8398830974350773984/out.bam_tail/.part-r-00001.bam.crc /tmp/adamTestMvnb0spyFX/8398830974350773984/.out.bam_head.crc /tmp/adamTestMvnb0spyFX/3234841571926090314 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite682398707337933684.interval_list /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite682398707337933684.interval_list/.part-00001.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite682398707337933684.interval_list/.part-00003.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite682398707337933684.interval_list/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite682398707337933684.interval_list/part-00003 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite682398707337933684.interval_list/.part-00000.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite682398707337933684.interval_list/part-00000 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite682398707337933684.interval_list/part-00002 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite682398707337933684.interval_list/_SUCCESS /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite682398707337933684.interval_list/part-00001 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite682398707337933684.interval_list/.part-00002.crc /tmp/adamTestMvnb0spyFX/TempSuite5636121691084546473_1.fq /tmp/adamTestMvnb0spyFX/TempSuite5636121691084546473_1.fq/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite5636121691084546473_1.fq/.part-00000.crc /tmp/adamTestMvnb0spyFX/TempSuite5636121691084546473_1.fq/part-00000 /tmp/adamTestMvnb0spyFX/TempSuite5636121691084546473_1.fq/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite7794966032756997113.adam /tmp/adamTestMvnb0spyFX/TempSuite7794966032756997113.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite7794966032756997113.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite7794966032756997113.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite7794966032756997113.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite7794966032756997113.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite7794966032756997113.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite7794966032756997113.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite7794966032756997113.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite7794966032756997113.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite7794966032756997113.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite7794966032756997113.adam/_header /tmp/adamTestMvnb0spyFX/TempSuite7794966032756997113.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/ReadDatasetSuite4078699906295423733.fastq /tmp/adamTestMvnb0spyFX/ReadDatasetSuite4078699906295423733.fastq/.part-00001.crc /tmp/adamTestMvnb0spyFX/ReadDatasetSuite4078699906295423733.fastq/.part-00003.crc /tmp/adamTestMvnb0spyFX/ReadDatasetSuite4078699906295423733.fastq/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/ReadDatasetSuite4078699906295423733.fastq/part-00003 /tmp/adamTestMvnb0spyFX/ReadDatasetSuite4078699906295423733.fastq/.part-00000.crc /tmp/adamTestMvnb0spyFX/ReadDatasetSuite4078699906295423733.fastq/part-00000 /tmp/adamTestMvnb0spyFX/ReadDatasetSuite4078699906295423733.fastq/part-00002 /tmp/adamTestMvnb0spyFX/ReadDatasetSuite4078699906295423733.fastq/_SUCCESS /tmp/adamTestMvnb0spyFX/ReadDatasetSuite4078699906295423733.fastq/part-00001 /tmp/adamTestMvnb0spyFX/ReadDatasetSuite4078699906295423733.fastq/.part-00002.crc /tmp/adamTestMvnb0spyFX/TempSuite5989558499537016408.adam /tmp/adamTestMvnb0spyFX/TempSuite5989558499537016408.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite5989558499537016408.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite5989558499537016408.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite5989558499537016408.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite5989558499537016408.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite5989558499537016408.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite5989558499537016408.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite5989558499537016408.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite5989558499537016408.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite5989558499537016408.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite5989558499537016408.adam/_header /tmp/adamTestMvnb0spyFX/TempSuite5989558499537016408.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/.TempSuite8975635600992361420.sam.crc /tmp/adamTestMvnb0spyFX/TempSuite9036320364156934047.adam /tmp/adamTestMvnb0spyFX/TempSuite9036320364156934047.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite9036320364156934047.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite9036320364156934047.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite9036320364156934047.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite9036320364156934047.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite9036320364156934047.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite9036320364156934047.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite9036320364156934047.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite9036320364156934047.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite9036320364156934047.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite9036320364156934047.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite9036320364156934047.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/TempSuite9036320364156934047.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/TempSuite9036320364156934047.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/.SliceDatasetSuite4831159868188361918.fasta.crc /tmp/adamTestMvnb0spyFX/TempSuite2611220917923052491 /tmp/adamTestMvnb0spyFX/TempSuite4801614860870049683.adam /tmp/adamTestMvnb0spyFX/TempSuite4801614860870049683.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite4801614860870049683.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite4801614860870049683.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite4801614860870049683.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite4801614860870049683.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite4801614860870049683.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite4801614860870049683.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite4801614860870049683.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite4801614860870049683.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite4801614860870049683.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite4801614860870049683.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite4801614860870049683.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/TempSuite4801614860870049683.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/TempSuite4801614860870049683.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite1652761520076651340 /tmp/adamTestMvnb0spyFX/TempSuite6812267723823007882.bed /tmp/adamTestMvnb0spyFX/TempSuite6812267723823007882.bed/.part-00001.crc /tmp/adamTestMvnb0spyFX/TempSuite6812267723823007882.bed/.part-00003.crc /tmp/adamTestMvnb0spyFX/TempSuite6812267723823007882.bed/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite6812267723823007882.bed/part-00003 /tmp/adamTestMvnb0spyFX/TempSuite6812267723823007882.bed/.part-00000.crc /tmp/adamTestMvnb0spyFX/TempSuite6812267723823007882.bed/part-00000 /tmp/adamTestMvnb0spyFX/TempSuite6812267723823007882.bed/part-00002 /tmp/adamTestMvnb0spyFX/TempSuite6812267723823007882.bed/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite6812267723823007882.bed/part-00001 /tmp/adamTestMvnb0spyFX/TempSuite6812267723823007882.bed/.part-00002.crc /tmp/adamTestMvnb0spyFX/javaAC5606040337481988400 /tmp/adamTestMvnb0spyFX/javaAC5606040337481988400/testRdd.variant.adam /tmp/adamTestMvnb0spyFX/javaAC5606040337481988400/testRdd.variant.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/javaAC5606040337481988400/testRdd.variant.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/javaAC5606040337481988400/testRdd.variant.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/javaAC5606040337481988400/testRdd.variant.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/javaAC5606040337481988400/testRdd.variant.adam/._header.crc /tmp/adamTestMvnb0spyFX/javaAC5606040337481988400/testRdd.variant.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/javaAC5606040337481988400/testRdd.variant.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/javaAC5606040337481988400/testRdd.variant.adam/_metadata /tmp/adamTestMvnb0spyFX/javaAC5606040337481988400/testRdd.variant.adam/_common_metadata /tmp/adamTestMvnb0spyFX/javaAC5606040337481988400/testRdd.variant.adam/_references.avro /tmp/adamTestMvnb0spyFX/javaAC5606040337481988400/testRdd.variant.adam/_header /tmp/adamTestMvnb0spyFX/javaAC5606040337481988400/testRdd.variant.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite7485645882337792189 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite2326302992700599139.bed /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite2326302992700599139.bed/.part-00001.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite2326302992700599139.bed/.part-00003.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite2326302992700599139.bed/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite2326302992700599139.bed/part-00003 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite2326302992700599139.bed/.part-00000.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite2326302992700599139.bed/part-00000 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite2326302992700599139.bed/part-00002 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite2326302992700599139.bed/_SUCCESS /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite2326302992700599139.bed/part-00001 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite2326302992700599139.bed/.part-00002.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite8966479977513043826.bed /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite8966479977513043826.bed/.part-00001.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite8966479977513043826.bed/.part-00003.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite8966479977513043826.bed/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite8966479977513043826.bed/part-00003 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite8966479977513043826.bed/.part-00000.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite8966479977513043826.bed/part-00000 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite8966479977513043826.bed/part-00002 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite8966479977513043826.bed/_SUCCESS /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite8966479977513043826.bed/part-00001 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite8966479977513043826.bed/.part-00002.crc /tmp/adamTestMvnb0spyFX/1567622751881-0 /tmp/adamTestMvnb0spyFX/1567622751881-0/bamReads.adam /tmp/adamTestMvnb0spyFX/1567622751881-0/bamReads.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/1567622751881-0/bamReads.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/1567622751881-0/bamReads.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/1567622751881-0/bamReads.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/1567622751881-0/bamReads.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/1567622751881-0/bamReads.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/1567622751881-0/bamReads.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/1567622751881-0/bamReads.adam/_metadata /tmp/adamTestMvnb0spyFX/1567622751881-0/bamReads.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/1567622751881-0/bamReads.adam/_common_metadata /tmp/adamTestMvnb0spyFX/1567622751881-0/bamReads.adam/_references.avro /tmp/adamTestMvnb0spyFX/1567622751881-0/bamReads.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/1567622751881-0/bamReads.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/1567622751881-0/bamReads.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite2845671519482384446.adam /tmp/adamTestMvnb0spyFX/TempSuite2845671519482384446.adam/.part-00000-546e2e0a-2990-4aa9-b02d-c5113a9ab539-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite2845671519482384446.adam/.part-00002-546e2e0a-2990-4aa9-b02d-c5113a9ab539-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite2845671519482384446.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite2845671519482384446.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite2845671519482384446.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite2845671519482384446.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite2845671519482384446.adam/.part-00001-546e2e0a-2990-4aa9-b02d-c5113a9ab539-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite2845671519482384446.adam/_samples.avro /tmp/adamTestMvnb0spyFX/TempSuite2845671519482384446.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite2845671519482384446.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite2845671519482384446.adam/_header /tmp/adamTestMvnb0spyFX/TempSuite2845671519482384446.adam/part-00002-546e2e0a-2990-4aa9-b02d-c5113a9ab539-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite2845671519482384446.adam/part-00001-546e2e0a-2990-4aa9-b02d-c5113a9ab539-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite2845671519482384446.adam/part-00000-546e2e0a-2990-4aa9-b02d-c5113a9ab539-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite4755715692202563781 /tmp/adamTestMvnb0spyFX/TempSuite4021980693717722205 /tmp/adamTestMvnb0spyFX/bqsr12942382347250760176 /tmp/adamTestMvnb0spyFX/bqsr12942382347250760176/bqsr1.bam /tmp/adamTestMvnb0spyFX/bqsr12942382347250760176/.bqsr1.bam.crc /tmp/adamTestMvnb0spyFX/6673814522370474397 /tmp/adamTestMvnb0spyFX/6673814522370474397/predicate.1.adam /tmp/adamTestMvnb0spyFX/6673814522370474397/predicate.1.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/6673814522370474397/predicate.1.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/6673814522370474397/predicate.1.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/6673814522370474397/predicate.1.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/6673814522370474397/predicate.1.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/6673814522370474397/predicate.1.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/6673814522370474397/predicate.1.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/6673814522370474397/predicate.1.adam/_metadata /tmp/adamTestMvnb0spyFX/6673814522370474397/predicate.1.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/6673814522370474397/predicate.1.adam/_common_metadata /tmp/adamTestMvnb0spyFX/6673814522370474397/predicate.1.adam/_references.avro /tmp/adamTestMvnb0spyFX/6673814522370474397/predicate.1.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/6673814522370474397/predicate.1.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/6673814522370474397/predicate.1.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite6018336827301953753.adam /tmp/adamTestMvnb0spyFX/TempSuite6018336827301953753.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite6018336827301953753.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite6018336827301953753.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite6018336827301953753.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite6018336827301953753.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite6018336827301953753.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite6018336827301953753.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite6018336827301953753.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite6018336827301953753.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite6018336827301953753.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite7253031539701787349.adam /tmp/adamTestMvnb0spyFX/TempSuite7253031539701787349.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite7253031539701787349.adam/part-r-00001.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite7253031539701787349.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite7253031539701787349.adam/part-r-00002.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite7253031539701787349.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite7253031539701787349.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite7253031539701787349.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite7253031539701787349.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite7253031539701787349.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite7253031539701787349.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite7253031539701787349.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite7253031539701787349.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite7253031539701787349.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite7253031539701787349.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite7253031539701787349.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite7253031539701787349.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite7253031539701787349.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/TempSuite7253031539701787349.adam/part-r-00003.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite7253031539701787349.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/TempSuite7253031539701787349.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite8168731527376773250 /tmp/adamTestMvnb0spyFX/TempSuite5423322192910015653.adam /tmp/adamTestMvnb0spyFX/TempSuite5423322192910015653.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite5423322192910015653.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite5423322192910015653.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite5423322192910015653.adam/part-00000-33fb03cd-195f-4992-98a0-fbbe1614ae0f-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite5423322192910015653.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite5423322192910015653.adam/.part-00000-33fb03cd-195f-4992-98a0-fbbe1614ae0f-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite4223240764156771185 /tmp/adamTestMvnb0spyFX/TempSuite7481415853226529479.adam /tmp/adamTestMvnb0spyFX/TempSuite7481415853226529479.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite7481415853226529479.adam/part-r-00001.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite7481415853226529479.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite7481415853226529479.adam/part-r-00002.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite7481415853226529479.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite7481415853226529479.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite7481415853226529479.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite7481415853226529479.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite7481415853226529479.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite7481415853226529479.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite7481415853226529479.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite7481415853226529479.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite7481415853226529479.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite7481415853226529479.adam/_samples.avro /tmp/adamTestMvnb0spyFX/TempSuite7481415853226529479.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite7481415853226529479.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite7481415853226529479.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite7481415853226529479.adam/part-r-00003.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite7481415853226529479.adam/_header /tmp/adamTestMvnb0spyFX/TempSuite7481415853226529479.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite7895400967893126682 /tmp/adamTestMvnb0spyFX/TempSuite8132083261475085869.adam /tmp/adamTestMvnb0spyFX/TempSuite8132083261475085869.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite8132083261475085869.adam/part-r-00001.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite8132083261475085869.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite8132083261475085869.adam/part-r-00002.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite8132083261475085869.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite8132083261475085869.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite8132083261475085869.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite8132083261475085869.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite8132083261475085869.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite8132083261475085869.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite8132083261475085869.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite8132083261475085869.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite8132083261475085869.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite8132083261475085869.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite8132083261475085869.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite8132083261475085869.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite8132083261475085869.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/TempSuite8132083261475085869.adam/part-r-00003.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite8132083261475085869.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/TempSuite8132083261475085869.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite517022558576910275.bed /tmp/adamTestMvnb0spyFX/TempSuite517022558576910275.bed/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite517022558576910275.bed/.part-00000.crc /tmp/adamTestMvnb0spyFX/TempSuite517022558576910275.bed/part-00000 /tmp/adamTestMvnb0spyFX/TempSuite517022558576910275.bed/_SUCCESS /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite8966479977513043826 /tmp/adamTestMvnb0spyFX/TempSuite7860247900978550408 /tmp/adamTestMvnb0spyFX/TempSuite3247859844225095228.adam /tmp/adamTestMvnb0spyFX/TempSuite3247859844225095228.adam/part-00000-7cbc9860-a8a0-47ff-ac8c-8b9def4d9fbd-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite3247859844225095228.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite3247859844225095228.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite3247859844225095228.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite3247859844225095228.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite3247859844225095228.adam/.part-00000-7cbc9860-a8a0-47ff-ac8c-8b9def4d9fbd-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite3247859844225095228.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite3247859844225095228.adam/_header /tmp/adamTestMvnb0spyFX/TempSuite8244960659193638178 /tmp/adamTestMvnb0spyFX/TempSuite8724951185837458359.adam /tmp/adamTestMvnb0spyFX/TempSuite8724951185837458359.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite8724951185837458359.adam/part-r-00001.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite8724951185837458359.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite8724951185837458359.adam/part-r-00002.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite8724951185837458359.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite8724951185837458359.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite8724951185837458359.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite8724951185837458359.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite8724951185837458359.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite8724951185837458359.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite8724951185837458359.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite8724951185837458359.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite8724951185837458359.adam/_samples.avro /tmp/adamTestMvnb0spyFX/TempSuite8724951185837458359.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite8724951185837458359.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite8724951185837458359.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite8724951185837458359.adam/part-r-00003.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite8724951185837458359.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite3881353008868298972.adam /tmp/adamTestMvnb0spyFX/TempSuite3881353008868298972.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite3881353008868298972.adam/part-r-00001.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite3881353008868298972.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite3881353008868298972.adam/part-r-00002.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite3881353008868298972.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite3881353008868298972.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite3881353008868298972.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite3881353008868298972.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite3881353008868298972.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite3881353008868298972.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite3881353008868298972.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite3881353008868298972.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite3881353008868298972.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite3881353008868298972.adam/_samples.avro /tmp/adamTestMvnb0spyFX/TempSuite3881353008868298972.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite3881353008868298972.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite3881353008868298972.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite3881353008868298972.adam/part-r-00003.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite3881353008868298972.adam/_header /tmp/adamTestMvnb0spyFX/TempSuite3881353008868298972.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite8996282093235212258 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite5782131563458264716 /tmp/adamTestMvnb0spyFX/TempSuite3960386088544315164.adam /tmp/adamTestMvnb0spyFX/TempSuite3960386088544315164.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite3960386088544315164.adam/part-00000-a8e0ca99-93b4-44bd-8a75-2f062df46b4e-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite3960386088544315164.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite3960386088544315164.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite3960386088544315164.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite3960386088544315164.adam/.part-00000-a8e0ca99-93b4-44bd-8a75-2f062df46b4e-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite1479682006642804465 /tmp/adamTestMvnb0spyFX/TempSuite762581844380445957.fa /tmp/adamTestMvnb0spyFX/TempSuite762581844380445957.fa/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite762581844380445957.fa/.part-00000.crc /tmp/adamTestMvnb0spyFX/TempSuite762581844380445957.fa/part-00000 /tmp/adamTestMvnb0spyFX/TempSuite762581844380445957.fa/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite6121877681860644599 /tmp/adamTestMvnb0spyFX/881512434782378991 /tmp/adamTestMvnb0spyFX/881512434782378991/coverage.adam /tmp/adamTestMvnb0spyFX/881512434782378991/coverage.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/881512434782378991/coverage.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/881512434782378991/coverage.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/881512434782378991/coverage.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/881512434782378991/coverage.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/881512434782378991/coverage.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/881512434782378991/coverage.adam/_metadata /tmp/adamTestMvnb0spyFX/881512434782378991/coverage.adam/_samples.avro /tmp/adamTestMvnb0spyFX/881512434782378991/coverage.adam/_common_metadata /tmp/adamTestMvnb0spyFX/881512434782378991/coverage.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/881512434782378991/coverage.adam/_references.avro /tmp/adamTestMvnb0spyFX/881512434782378991/coverage.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite1711729321473319794 /tmp/adamTestMvnb0spyFX/TempSuite2954487504178362748 /tmp/adamTestMvnb0spyFX/TempSuite547244877131440021 /tmp/adamTestMvnb0spyFX/TempSuite5122779391457154023 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite2776871400427085425.gtf /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite2776871400427085425.gtf/.part-00001.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite2776871400427085425.gtf/.part-00003.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite2776871400427085425.gtf/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite2776871400427085425.gtf/part-00003 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite2776871400427085425.gtf/.part-00000.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite2776871400427085425.gtf/part-00000 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite2776871400427085425.gtf/part-00002 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite2776871400427085425.gtf/_SUCCESS /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite2776871400427085425.gtf/part-00001 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite2776871400427085425.gtf/.part-00002.crc /tmp/adamTestMvnb0spyFX/TempSuite5448328260791874979.adam /tmp/adamTestMvnb0spyFX/TempSuite5448328260791874979.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite5448328260791874979.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite5448328260791874979.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite5448328260791874979.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite5448328260791874979.adam/.part-00000-2ebda91e-bb99-440f-80b0-db43f619b1a8-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite5448328260791874979.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite5448328260791874979.adam/_header /tmp/adamTestMvnb0spyFX/TempSuite5448328260791874979.adam/part-00000-2ebda91e-bb99-440f-80b0-db43f619b1a8-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite1021165447068640204 /tmp/adamTestMvnb0spyFX/TempSuite7913073559000814529 /tmp/adamTestMvnb0spyFX/TempSuite7068470766434123610 /tmp/adamTestMvnb0spyFX/TempSuite1612546435509457993.vcf /tmp/adamTestMvnb0spyFX/TempSuite1612546435509457993.vcf/.part-r-00000.crc /tmp/adamTestMvnb0spyFX/TempSuite1612546435509457993.vcf/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite1612546435509457993.vcf/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite1612546435509457993.vcf/part-r-00000 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite5337959601903487058.bed /tmp/adamTestMvnb0spyFX/TempSuite7926258336075241955 /tmp/adamTestMvnb0spyFX/TempSuite3826754276881373197_1.fq /tmp/adamTestMvnb0spyFX/TempSuite3826754276881373197_1.fq/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite3826754276881373197_1.fq/.part-00000.crc /tmp/adamTestMvnb0spyFX/TempSuite3826754276881373197_1.fq/part-00000 /tmp/adamTestMvnb0spyFX/TempSuite3826754276881373197_1.fq/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite3482956658394923836.fa /tmp/adamTestMvnb0spyFX/TempSuite3482956658394923836.fa/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite3482956658394923836.fa/.part-00000.crc /tmp/adamTestMvnb0spyFX/TempSuite3482956658394923836.fa/part-00000 /tmp/adamTestMvnb0spyFX/TempSuite3482956658394923836.fa/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite7871917859905789272.bed /tmp/adamTestMvnb0spyFX/TempSuite7871917859905789272.bed/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite7871917859905789272.bed/.part-00000.crc /tmp/adamTestMvnb0spyFX/TempSuite7871917859905789272.bed/part-00000 /tmp/adamTestMvnb0spyFX/TempSuite7871917859905789272.bed/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite4109091595396195477 /tmp/adamTestMvnb0spyFX/TempSuite722922353950353847_2.fq /tmp/adamTestMvnb0spyFX/TempSuite722922353950353847_2.fq/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite722922353950353847_2.fq/.part-00000.crc /tmp/adamTestMvnb0spyFX/TempSuite722922353950353847_2.fq/part-00000 /tmp/adamTestMvnb0spyFX/TempSuite722922353950353847_2.fq/_SUCCESS /tmp/adamTestMvnb0spyFX/.FeatureDatasetFunctionsSuite1009651091727369744.interval_list.crc /tmp/adamTestMvnb0spyFX/TempSuite8643128965574547905.adam /tmp/adamTestMvnb0spyFX/TempSuite8643128965574547905.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite8643128965574547905.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite8643128965574547905.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite8643128965574547905.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite8643128965574547905.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite8643128965574547905.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite8643128965574547905.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite8643128965574547905.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite8643128965574547905.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite8643128965574547905.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite8643128965574547905.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite8643128965574547905.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/TempSuite8643128965574547905.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/TempSuite8643128965574547905.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/sorted.sam8064529242301316475.sam /tmp/adamTestMvnb0spyFX/TempSuite2298505133131109902.adam /tmp/adamTestMvnb0spyFX/TempSuite2298505133131109902.adam/.part-00002-45c2418c-154f-470b-a46f-a5e284de9db6-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite2298505133131109902.adam/part-00001-45c2418c-154f-470b-a46f-a5e284de9db6-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite2298505133131109902.adam/part-00000-45c2418c-154f-470b-a46f-a5e284de9db6-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite2298505133131109902.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite2298505133131109902.adam/part-00002-45c2418c-154f-470b-a46f-a5e284de9db6-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite2298505133131109902.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite2298505133131109902.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite2298505133131109902.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite2298505133131109902.adam/.part-00001-45c2418c-154f-470b-a46f-a5e284de9db6-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite2298505133131109902.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite2298505133131109902.adam/_header /tmp/adamTestMvnb0spyFX/TempSuite2298505133131109902.adam/.part-00000-45c2418c-154f-470b-a46f-a5e284de9db6-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/3902562320162674149 /tmp/adamTestMvnb0spyFX/3902562320162674149/variants.adam /tmp/adamTestMvnb0spyFX/3902562320162674149/variants.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/3902562320162674149/variants.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/3902562320162674149/variants.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/3902562320162674149/variants.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/3902562320162674149/variants.adam/._header.crc /tmp/adamTestMvnb0spyFX/3902562320162674149/variants.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/3902562320162674149/variants.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/3902562320162674149/variants.adam/_metadata /tmp/adamTestMvnb0spyFX/3902562320162674149/variants.adam/_common_metadata /tmp/adamTestMvnb0spyFX/3902562320162674149/variants.adam/_references.avro /tmp/adamTestMvnb0spyFX/3902562320162674149/variants.adam/_header /tmp/adamTestMvnb0spyFX/3902562320162674149/variants.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite7855205283845808752 /tmp/adamTestMvnb0spyFX/1567622935037-0 /tmp/adamTestMvnb0spyFX/1567622935037-0/test_single.vcf /tmp/adamTestMvnb0spyFX/1567622935037-0/test.vcf /tmp/adamTestMvnb0spyFX/1567622935037-0/test.vcf/.part-r-00000.crc /tmp/adamTestMvnb0spyFX/1567622935037-0/test.vcf/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/1567622935037-0/test.vcf/_SUCCESS /tmp/adamTestMvnb0spyFX/1567622935037-0/test.vcf/part-r-00000 /tmp/adamTestMvnb0spyFX/1567622935037-0/.test_single.vcf.crc /tmp/adamTestMvnb0spyFX/ReadDatasetSuite3626990993401898484 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite8742577676558924496 /tmp/adamTestMvnb0spyFX/TempSuite8440131802153487644 /tmp/adamTestMvnb0spyFX/TempSuite3179596302581227636.adam /tmp/adamTestMvnb0spyFX/TempSuite3179596302581227636.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite3179596302581227636.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite3179596302581227636.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite3179596302581227636.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite3179596302581227636.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite3179596302581227636.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite3179596302581227636.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite3179596302581227636.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite3179596302581227636.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite3179596302581227636.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite3179596302581227636.adam/_header /tmp/adamTestMvnb0spyFX/TempSuite3179596302581227636.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/7657421371579537066 /tmp/adamTestMvnb0spyFX/7657421371579537066/sorted.lex.vcf /tmp/adamTestMvnb0spyFX/7657421371579537066/.sorted.lex.vcf.crc /tmp/adamTestMvnb0spyFX/TempSuite3881353008868298972 /tmp/adamTestMvnb0spyFX/javaAC141230508088800734 /tmp/adamTestMvnb0spyFX/javaAC141230508088800734/testRdd.fragment.adam /tmp/adamTestMvnb0spyFX/javaAC141230508088800734/testRdd.fragment.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/javaAC141230508088800734/testRdd.fragment.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/javaAC141230508088800734/testRdd.fragment.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/javaAC141230508088800734/testRdd.fragment.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/javaAC141230508088800734/testRdd.fragment.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/javaAC141230508088800734/testRdd.fragment.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/javaAC141230508088800734/testRdd.fragment.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/javaAC141230508088800734/testRdd.fragment.adam/_metadata /tmp/adamTestMvnb0spyFX/javaAC141230508088800734/testRdd.fragment.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/javaAC141230508088800734/testRdd.fragment.adam/_common_metadata /tmp/adamTestMvnb0spyFX/javaAC141230508088800734/testRdd.fragment.adam/_references.avro /tmp/adamTestMvnb0spyFX/javaAC141230508088800734/testRdd.fragment.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/javaAC141230508088800734/testRdd.fragment.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/javaAC141230508088800734/testRdd.fragment.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite3838475636781836996 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite4223240764156771185.gtf /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite4223240764156771185.gtf/.part-00001.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite4223240764156771185.gtf/.part-00003.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite4223240764156771185.gtf/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite4223240764156771185.gtf/part-00003 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite4223240764156771185.gtf/.part-00000.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite4223240764156771185.gtf/part-00000 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite4223240764156771185.gtf/part-00002 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite4223240764156771185.gtf/_SUCCESS /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite4223240764156771185.gtf/part-00001 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite4223240764156771185.gtf/.part-00002.crc /tmp/adamTestMvnb0spyFX/.FeatureDatasetFunctionsSuite7652776886456979321.narrowPeak.crc /tmp/adamTestMvnb0spyFX/SliceDatasetSuite4128133642973415274 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite8711158077592442580.narrowPeak /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite8711158077592442580.narrowPeak/.part-00001.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite8711158077592442580.narrowPeak/.part-00003.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite8711158077592442580.narrowPeak/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite8711158077592442580.narrowPeak/part-00003 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite8711158077592442580.narrowPeak/.part-00000.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite8711158077592442580.narrowPeak/part-00000 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite8711158077592442580.narrowPeak/part-00002 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite8711158077592442580.narrowPeak/_SUCCESS /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite8711158077592442580.narrowPeak/part-00001 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite8711158077592442580.narrowPeak/.part-00002.crc /tmp/adamTestMvnb0spyFX/TempSuite4572206539595874869 /tmp/adamTestMvnb0spyFX/TempSuite9102373516198292171 /tmp/adamTestMvnb0spyFX/TempSuite6154560761410630868.bed /tmp/adamTestMvnb0spyFX/TempSuite6154560761410630868.bed/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite6154560761410630868.bed/.part-00000.crc /tmp/adamTestMvnb0spyFX/TempSuite6154560761410630868.bed/part-00000 /tmp/adamTestMvnb0spyFX/TempSuite6154560761410630868.bed/_SUCCESS /tmp/adamTestMvnb0spyFX/ordered.sam5845306923789239213.sam /tmp/adamTestMvnb0spyFX/TempSuite3080188816596709591 /tmp/adamTestMvnb0spyFX/.SequenceDatasetSuite2111738397040297335.fasta.crc /tmp/adamTestMvnb0spyFX/TempSuite4968106223003820690 /tmp/adamTestMvnb0spyFX/TempSuite1664670996834759004.adam /tmp/adamTestMvnb0spyFX/TempSuite1664670996834759004.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite1664670996834759004.adam/.part-00001-f71829d5-642c-47d9-9a28-1d7d3ed9771b-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite1664670996834759004.adam/part-00001-f71829d5-642c-47d9-9a28-1d7d3ed9771b-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite1664670996834759004.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite1664670996834759004.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite1664670996834759004.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite1664670996834759004.adam/.part-00000-f71829d5-642c-47d9-9a28-1d7d3ed9771b-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite1664670996834759004.adam/part-00002-f71829d5-642c-47d9-9a28-1d7d3ed9771b-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite1664670996834759004.adam/part-00000-f71829d5-642c-47d9-9a28-1d7d3ed9771b-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite1664670996834759004.adam/_samples.avro /tmp/adamTestMvnb0spyFX/TempSuite1664670996834759004.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite1664670996834759004.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite1664670996834759004.adam/.part-00002-f71829d5-642c-47d9-9a28-1d7d3ed9771b-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite1664670996834759004.adam/_header /tmp/adamTestMvnb0spyFX/3565743439123365316 /tmp/adamTestMvnb0spyFX/3565743439123365316/.ordered.sam.crc /tmp/adamTestMvnb0spyFX/3565743439123365316/ordered.sam /tmp/adamTestMvnb0spyFX/TempSuite4572206539595874869.adam /tmp/adamTestMvnb0spyFX/TempSuite4572206539595874869.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite4572206539595874869.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite4572206539595874869.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite4572206539595874869.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite4572206539595874869.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite4572206539595874869.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite4572206539595874869.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite4572206539595874869.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite4572206539595874869.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite4572206539595874869.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite4572206539595874869.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite4572206539595874869.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/TempSuite4572206539595874869.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/TempSuite4572206539595874869.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite9103938568954847393.adam /tmp/adamTestMvnb0spyFX/TempSuite9103938568954847393.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite9103938568954847393.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite9103938568954847393.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite9103938568954847393.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite9103938568954847393.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite9103938568954847393.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite9103938568954847393.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite9103938568954847393.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite9103938568954847393.adam/_samples.avro /tmp/adamTestMvnb0spyFX/TempSuite9103938568954847393.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite9103938568954847393.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite9103938568954847393.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite9103938568954847393.adam/_header /tmp/adamTestMvnb0spyFX/TempSuite9103938568954847393.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/javaAC1617437044890979063 /tmp/adamTestMvnb0spyFX/javaAC1617437044890979063/testRdd.feature.adam /tmp/adamTestMvnb0spyFX/javaAC1617437044890979063/testRdd.feature.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnb0spyFX/javaAC1617437044890979063/testRdd.feature.adam/part-r-00001.gz.parquet /tmp/adamTestMvnb0spyFX/javaAC1617437044890979063/testRdd.feature.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/javaAC1617437044890979063/testRdd.feature.adam/part-r-00002.gz.parquet /tmp/adamTestMvnb0spyFX/javaAC1617437044890979063/testRdd.feature.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/javaAC1617437044890979063/testRdd.feature.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/javaAC1617437044890979063/testRdd.feature.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/javaAC1617437044890979063/testRdd.feature.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/javaAC1617437044890979063/testRdd.feature.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/javaAC1617437044890979063/testRdd.feature.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnb0spyFX/javaAC1617437044890979063/testRdd.feature.adam/_metadata /tmp/adamTestMvnb0spyFX/javaAC1617437044890979063/testRdd.feature.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnb0spyFX/javaAC1617437044890979063/testRdd.feature.adam/_samples.avro /tmp/adamTestMvnb0spyFX/javaAC1617437044890979063/testRdd.feature.adam/_common_metadata /tmp/adamTestMvnb0spyFX/javaAC1617437044890979063/testRdd.feature.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/javaAC1617437044890979063/testRdd.feature.adam/_references.avro /tmp/adamTestMvnb0spyFX/javaAC1617437044890979063/testRdd.feature.adam/part-r-00003.gz.parquet /tmp/adamTestMvnb0spyFX/javaAC1617437044890979063/testRdd.feature.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite6120355796070605567.adam /tmp/adamTestMvnb0spyFX/TempSuite6120355796070605567.adam/part-00000-479279ef-ef50-47c7-bbe7-4c193731a020-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite6120355796070605567.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite6120355796070605567.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite6120355796070605567.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite6120355796070605567.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite6120355796070605567.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite6120355796070605567.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite6120355796070605567.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/TempSuite6120355796070605567.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/TempSuite6120355796070605567.adam/.part-00000-479279ef-ef50-47c7-bbe7-4c193731a020-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite3044828612549876309.vcf /tmp/adamTestMvnb0spyFX/TempSuite3044828612549876309.vcf/.part-r-00000.crc /tmp/adamTestMvnb0spyFX/TempSuite3044828612549876309.vcf/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite3044828612549876309.vcf/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite3044828612549876309.vcf/part-r-00000 /tmp/adamTestMvnb0spyFX/TempSuite3912072694921745770 /tmp/adamTestMvnb0spyFX/javaAC7267526924249728534 /tmp/adamTestMvnb0spyFX/javaAC7267526924249728534/testRdd.read.adam /tmp/adamTestMvnb0spyFX/javaAC7267526924249728534/testRdd.read.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/javaAC7267526924249728534/testRdd.read.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/javaAC7267526924249728534/testRdd.read.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/javaAC7267526924249728534/testRdd.read.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/javaAC7267526924249728534/testRdd.read.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/javaAC7267526924249728534/testRdd.read.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/javaAC7267526924249728534/testRdd.read.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/javaAC7267526924249728534/testRdd.read.adam/_metadata /tmp/adamTestMvnb0spyFX/javaAC7267526924249728534/testRdd.read.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/javaAC7267526924249728534/testRdd.read.adam/_common_metadata /tmp/adamTestMvnb0spyFX/javaAC7267526924249728534/testRdd.read.adam/_references.avro /tmp/adamTestMvnb0spyFX/javaAC7267526924249728534/testRdd.read.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/javaAC7267526924249728534/testRdd.read.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/javaAC7267526924249728534/testRdd.read.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite3412431225620808757.bed /tmp/adamTestMvnb0spyFX/TempSuite3412431225620808757.bed/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite3412431225620808757.bed/.part-00000.crc /tmp/adamTestMvnb0spyFX/TempSuite3412431225620808757.bed/part-00000 /tmp/adamTestMvnb0spyFX/TempSuite3412431225620808757.bed/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite9068216469798548147 /tmp/adamTestMvnb0spyFX/1624277703055428886 /tmp/adamTestMvnb0spyFX/1624277703055428886/predicate.2.adam /tmp/adamTestMvnb0spyFX/1624277703055428886/predicate.2.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/1624277703055428886/predicate.2.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/1624277703055428886/predicate.2.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/1624277703055428886/predicate.2.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/1624277703055428886/predicate.2.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/1624277703055428886/predicate.2.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/1624277703055428886/predicate.2.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/1624277703055428886/predicate.2.adam/_metadata /tmp/adamTestMvnb0spyFX/1624277703055428886/predicate.2.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/1624277703055428886/predicate.2.adam/_common_metadata /tmp/adamTestMvnb0spyFX/1624277703055428886/predicate.2.adam/_references.avro /tmp/adamTestMvnb0spyFX/1624277703055428886/predicate.2.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/1624277703055428886/predicate.2.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/1624277703055428886/predicate.2.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite1985776258197734722.sam /tmp/adamTestMvnb0spyFX/TempSuite5633630738752138615 /tmp/adamTestMvnb0spyFX/TempSuite216592759625590601.adam /tmp/adamTestMvnb0spyFX/TempSuite216592759625590601.adam/.part-00000-fd0588fb-1c05-4ba7-a820-32a3eeff95f5-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite216592759625590601.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite216592759625590601.adam/part-00000-fd0588fb-1c05-4ba7-a820-32a3eeff95f5-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite216592759625590601.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite216592759625590601.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite216592759625590601.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite216592759625590601.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite216592759625590601.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite216592759625590601.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/TempSuite216592759625590601.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/TempSuite3328822851332713981.adam /tmp/adamTestMvnb0spyFX/TempSuite3328822851332713981.adam/part-00000-87f7939a-1c05-440c-b7da-45f401910bf3-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite3328822851332713981.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite3328822851332713981.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite3328822851332713981.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite3328822851332713981.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite3328822851332713981.adam/_samples.avro /tmp/adamTestMvnb0spyFX/TempSuite3328822851332713981.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite3328822851332713981.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite3328822851332713981.adam/.part-00000-87f7939a-1c05-440c-b7da-45f401910bf3-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite3328822851332713981.adam/_header /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite6283135506115011959.fasta /tmp/adamTestMvnb0spyFX/TempSuite7084142440379093071.fq /tmp/adamTestMvnb0spyFX/TempSuite7084142440379093071.fq/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite7084142440379093071.fq/.part-00000.crc /tmp/adamTestMvnb0spyFX/TempSuite7084142440379093071.fq/part-00000 /tmp/adamTestMvnb0spyFX/TempSuite7084142440379093071.fq/_SUCCESS /tmp/adamTestMvnb0spyFX/226114147866143169 /tmp/adamTestMvnb0spyFX/226114147866143169/sorted.lex.vcf /tmp/adamTestMvnb0spyFX/226114147866143169/.sorted.lex.vcf.crc /tmp/adamTestMvnb0spyFX/7321468406789761116 /tmp/adamTestMvnb0spyFX/7321468406789761116/genotypes.adam /tmp/adamTestMvnb0spyFX/7321468406789761116/genotypes.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/7321468406789761116/genotypes.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/7321468406789761116/genotypes.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/7321468406789761116/genotypes.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/7321468406789761116/genotypes.adam/._header.crc /tmp/adamTestMvnb0spyFX/7321468406789761116/genotypes.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/7321468406789761116/genotypes.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/7321468406789761116/genotypes.adam/_metadata /tmp/adamTestMvnb0spyFX/7321468406789761116/genotypes.adam/_samples.avro /tmp/adamTestMvnb0spyFX/7321468406789761116/genotypes.adam/_common_metadata /tmp/adamTestMvnb0spyFX/7321468406789761116/genotypes.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/7321468406789761116/genotypes.adam/_references.avro /tmp/adamTestMvnb0spyFX/7321468406789761116/genotypes.adam/_header /tmp/adamTestMvnb0spyFX/7321468406789761116/genotypes.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/4032809844130572944 /tmp/adamTestMvnb0spyFX/4032809844130572944/binned.adam /tmp/adamTestMvnb0spyFX/4032809844130572944/binned.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/4032809844130572944/binned.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/4032809844130572944/binned.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/4032809844130572944/binned.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/4032809844130572944/binned.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/4032809844130572944/binned.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/4032809844130572944/binned.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/4032809844130572944/binned.adam/_metadata /tmp/adamTestMvnb0spyFX/4032809844130572944/binned.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/4032809844130572944/binned.adam/_common_metadata /tmp/adamTestMvnb0spyFX/4032809844130572944/binned.adam/_references.avro /tmp/adamTestMvnb0spyFX/4032809844130572944/binned.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/4032809844130572944/binned.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/4032809844130572944/binned.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/1567622436106-0 /tmp/adamTestMvnb0spyFX/1567622436106-0/test_single.vcf /tmp/adamTestMvnb0spyFX/1567622436106-0/test.vcf /tmp/adamTestMvnb0spyFX/1567622436106-0/test.vcf/.part-r-00000.crc /tmp/adamTestMvnb0spyFX/1567622436106-0/test.vcf/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/1567622436106-0/test.vcf/_SUCCESS /tmp/adamTestMvnb0spyFX/1567622436106-0/test.vcf/part-r-00000 /tmp/adamTestMvnb0spyFX/1567622436106-0/.test_single.vcf.crc /tmp/adamTestMvnb0spyFX/TempSuite3570729803937158363 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite465424534155886512 /tmp/adamTestMvnb0spyFX/TempSuite5499920943398800915 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite1029819534791571898.gtf /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite1029819534791571898.gtf/.part-00001.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite1029819534791571898.gtf/.part-00003.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite1029819534791571898.gtf/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite1029819534791571898.gtf/part-00003 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite1029819534791571898.gtf/.part-00000.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite1029819534791571898.gtf/part-00000 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite1029819534791571898.gtf/part-00002 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite1029819534791571898.gtf/_SUCCESS /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite1029819534791571898.gtf/part-00001 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite1029819534791571898.gtf/.part-00002.crc /tmp/adamTestMvnb0spyFX/TempSuite4264829335977565905 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite4844015183568300088.gtf /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite4844015183568300088.gtf/.part-00001.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite4844015183568300088.gtf/.part-00003.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite4844015183568300088.gtf/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite4844015183568300088.gtf/part-00003 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite4844015183568300088.gtf/.part-00000.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite4844015183568300088.gtf/part-00000 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite4844015183568300088.gtf/part-00002 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite4844015183568300088.gtf/_SUCCESS /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite4844015183568300088.gtf/part-00001 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite4844015183568300088.gtf/.part-00002.crc /tmp/adamTestMvnb0spyFX/TempSuite8517716001192333448.sam /tmp/adamTestMvnb0spyFX/TempSuite8517716001192333448.sam/part-r-00000.sam /tmp/adamTestMvnb0spyFX/TempSuite8517716001192333448.sam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite8517716001192333448.sam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite8517716001192333448.sam/.part-r-00000.sam.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite437833064469313985 /tmp/adamTestMvnb0spyFX/TempSuite4817973662293044709.adam /tmp/adamTestMvnb0spyFX/TempSuite4817973662293044709.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite4817973662293044709.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite4817973662293044709.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite4817973662293044709.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite4817973662293044709.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite4817973662293044709.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite4817973662293044709.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite4817973662293044709.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite4817973662293044709.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite4817973662293044709.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite4817973662293044709.adam/_header /tmp/adamTestMvnb0spyFX/TempSuite4817973662293044709.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite4024925401560411753 /tmp/adamTestMvnb0spyFX/6967603569673654626 /tmp/adamTestMvnb0spyFX/6967603569673654626/unordered.adam /tmp/adamTestMvnb0spyFX/6967603569673654626/unordered.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/6967603569673654626/unordered.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/6967603569673654626/unordered.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/6967603569673654626/unordered.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/6967603569673654626/unordered.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/6967603569673654626/unordered.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/6967603569673654626/unordered.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/6967603569673654626/unordered.adam/_metadata /tmp/adamTestMvnb0spyFX/6967603569673654626/unordered.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/6967603569673654626/unordered.adam/_common_metadata /tmp/adamTestMvnb0spyFX/6967603569673654626/unordered.adam/_references.avro /tmp/adamTestMvnb0spyFX/6967603569673654626/unordered.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/6967603569673654626/unordered.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/6967603569673654626/unordered.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite29037166354233401 /tmp/adamTestMvnb0spyFX/TempSuite2918878102769803537 /tmp/adamTestMvnb0spyFX/TempSuite7860247900978550408.adam /tmp/adamTestMvnb0spyFX/TempSuite7860247900978550408.adam/part-00000-4beda761-1d56-49b9-b746-374a6c4ab3f9-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite7860247900978550408.adam/part-00002-4beda761-1d56-49b9-b746-374a6c4ab3f9-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite7860247900978550408.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite7860247900978550408.adam/.part-00001-4beda761-1d56-49b9-b746-374a6c4ab3f9-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite7860247900978550408.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite7860247900978550408.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite7860247900978550408.adam/.part-00000-4beda761-1d56-49b9-b746-374a6c4ab3f9-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite7860247900978550408.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite7860247900978550408.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite7860247900978550408.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite7860247900978550408.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/TempSuite7860247900978550408.adam/part-00001-4beda761-1d56-49b9-b746-374a6c4ab3f9-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite7860247900978550408.adam/.part-00002-4beda761-1d56-49b9-b746-374a6c4ab3f9-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite7860247900978550408.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite8948463691720557949 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite2776871400427085425 /tmp/adamTestMvnb0spyFX/TempSuite1172402175753517606.adam /tmp/adamTestMvnb0spyFX/TempSuite1172402175753517606.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite1172402175753517606.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite1172402175753517606.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite1172402175753517606.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite1172402175753517606.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite1172402175753517606.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite1172402175753517606.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite1172402175753517606.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite1172402175753517606.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite1172402175753517606.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite1172402175753517606.adam/_header /tmp/adamTestMvnb0spyFX/TempSuite1172402175753517606.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite3183015719143035137.adam /tmp/adamTestMvnb0spyFX/TempSuite3183015719143035137.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite3183015719143035137.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite3183015719143035137.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite3183015719143035137.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite3183015719143035137.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite3183015719143035137.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite3183015719143035137.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite3183015719143035137.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite3183015719143035137.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite3183015719143035137.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite3183015719143035137.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite3183015719143035137.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/TempSuite3183015719143035137.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/TempSuite3183015719143035137.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/javaAC509423801045587369 /tmp/adamTestMvnb0spyFX/javaAC509423801045587369/testRdd.sequences.adam /tmp/adamTestMvnb0spyFX/javaAC509423801045587369/testRdd.sequences.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/javaAC509423801045587369/testRdd.sequences.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/javaAC509423801045587369/testRdd.sequences.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/javaAC509423801045587369/testRdd.sequences.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/javaAC509423801045587369/testRdd.sequences.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/javaAC509423801045587369/testRdd.sequences.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/javaAC509423801045587369/testRdd.sequences.adam/_metadata /tmp/adamTestMvnb0spyFX/javaAC509423801045587369/testRdd.sequences.adam/_common_metadata /tmp/adamTestMvnb0spyFX/javaAC509423801045587369/testRdd.sequences.adam/_references.avro /tmp/adamTestMvnb0spyFX/javaAC509423801045587369/testRdd.sequences.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite9062572497392727183 /tmp/adamTestMvnb0spyFX/TempSuite8119797644127429511 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite3421258775967403602.interval_list /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite3421258775967403602.interval_list/.part-00001.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite3421258775967403602.interval_list/.part-00003.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite3421258775967403602.interval_list/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite3421258775967403602.interval_list/part-00003 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite3421258775967403602.interval_list/.part-00000.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite3421258775967403602.interval_list/part-00000 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite3421258775967403602.interval_list/part-00002 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite3421258775967403602.interval_list/_SUCCESS /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite3421258775967403602.interval_list/part-00001 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite3421258775967403602.interval_list/.part-00002.crc /tmp/adamTestMvnb0spyFX/sorted-variants.vcf8134897580421436603.vcf /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite1972565019332031078 /tmp/adamTestMvnb0spyFX/861786118423175901 /tmp/adamTestMvnb0spyFX/861786118423175901/unordered.sam /tmp/adamTestMvnb0spyFX/861786118423175901/.unordered.sam.crc /tmp/adamTestMvnb0spyFX/TempSuite4379289820027023390.adam /tmp/adamTestMvnb0spyFX/TempSuite4379289820027023390.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite4379289820027023390.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite4379289820027023390.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite4379289820027023390.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite4379289820027023390.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite4379289820027023390.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite4379289820027023390.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite4379289820027023390.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite4379289820027023390.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite4379289820027023390.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite4379289820027023390.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite4379289820027023390.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/TempSuite4379289820027023390.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/TempSuite4379289820027023390.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite7244392612644973173reads12.sam /tmp/adamTestMvnb0spyFX/TempSuite4926876495993202879 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite8168731527376773250.narrowPeak /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite8168731527376773250.narrowPeak/.part-00001.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite8168731527376773250.narrowPeak/.part-00003.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite8168731527376773250.narrowPeak/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite8168731527376773250.narrowPeak/part-00003 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite8168731527376773250.narrowPeak/.part-00000.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite8168731527376773250.narrowPeak/part-00000 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite8168731527376773250.narrowPeak/part-00002 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite8168731527376773250.narrowPeak/_SUCCESS /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite8168731527376773250.narrowPeak/part-00001 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite8168731527376773250.narrowPeak/.part-00002.crc /tmp/adamTestMvnb0spyFX/TempSuite3133380425211980074 /tmp/adamTestMvnb0spyFX/trinity.fa8767782690014403147.fa /tmp/adamTestMvnb0spyFX/hg19.chrM.2bit6541651010184830842.chrM.2bit /tmp/adamTestMvnb0spyFX/TempSuite5407825697586342794 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite1188083009041797821.interval_list /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite1188083009041797821.interval_list/.part-00001.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite1188083009041797821.interval_list/.part-00003.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite1188083009041797821.interval_list/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite1188083009041797821.interval_list/part-00003 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite1188083009041797821.interval_list/.part-00000.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite1188083009041797821.interval_list/part-00000 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite1188083009041797821.interval_list/part-00002 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite1188083009041797821.interval_list/_SUCCESS /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite1188083009041797821.interval_list/part-00001 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite1188083009041797821.interval_list/.part-00002.crc /tmp/adamTestMvnb0spyFX/TempSuite7755698663894224728.adam /tmp/adamTestMvnb0spyFX/TempSuite7755698663894224728.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite7755698663894224728.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite7755698663894224728.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite7755698663894224728.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite7755698663894224728.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite7755698663894224728.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite7755698663894224728.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite7755698663894224728.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite7755698663894224728.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite7755698663894224728.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite7755698663894224728.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite7755698663894224728.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/TempSuite7755698663894224728.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/TempSuite7755698663894224728.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite793330311733419624 /tmp/adamTestMvnb0spyFX/1170793670266638511 /tmp/adamTestMvnb0spyFX/TempSuite5726080030383348091.bed /tmp/adamTestMvnb0spyFX/TempSuite5726080030383348091.bed/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite5726080030383348091.bed/.part-00000.crc /tmp/adamTestMvnb0spyFX/TempSuite5726080030383348091.bed/part-00000 /tmp/adamTestMvnb0spyFX/TempSuite5726080030383348091.bed/_SUCCESS /tmp/adamTestMvnb0spyFX/sample1.queryname.sam5523970491032322399.queryname.sam /tmp/adamTestMvnb0spyFX/TempSuite1693906180333899595.adam /tmp/adamTestMvnb0spyFX/TempSuite1693906180333899595.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite1693906180333899595.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite1693906180333899595.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite1693906180333899595.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite1693906180333899595.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite1693906180333899595.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite1693906180333899595.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite1693906180333899595.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite1693906180333899595.adam/_samples.avro /tmp/adamTestMvnb0spyFX/TempSuite1693906180333899595.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite1693906180333899595.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite1693906180333899595.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite1693906180333899595.adam/_header /tmp/adamTestMvnb0spyFX/TempSuite1693906180333899595.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite6607672961631973944 /tmp/adamTestMvnb0spyFX/TempSuite3040963875912192245 /tmp/adamTestMvnb0spyFX/SliceDatasetSuite4831159868188361918.fasta /tmp/adamTestMvnb0spyFX/TempSuite1977064123456401454 /tmp/adamTestMvnb0spyFX/TempSuite4022984222130012641 /tmp/adamTestMvnb0spyFX/TempSuite60737275529428666.adam /tmp/adamTestMvnb0spyFX/TempSuite60737275529428666.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite60737275529428666.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite60737275529428666.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite60737275529428666.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite60737275529428666.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite60737275529428666.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite60737275529428666.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite60737275529428666.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite60737275529428666.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite60737275529428666.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite60737275529428666.adam/_header /tmp/adamTestMvnb0spyFX/TempSuite60737275529428666.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite1725050779661907119.adam /tmp/adamTestMvnb0spyFX/TempSuite1725050779661907119.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite1725050779661907119.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite1725050779661907119.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite1725050779661907119.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite1725050779661907119.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite1725050779661907119.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite1725050779661907119.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite1725050779661907119.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite1725050779661907119.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite1725050779661907119.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite1725050779661907119.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite1725050779661907119.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/TempSuite1725050779661907119.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/TempSuite1725050779661907119.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite1777774337375880689.bed /tmp/adamTestMvnb0spyFX/TempSuite1777774337375880689.bed/.part-00001.crc /tmp/adamTestMvnb0spyFX/TempSuite1777774337375880689.bed/.part-00003.crc /tmp/adamTestMvnb0spyFX/TempSuite1777774337375880689.bed/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite1777774337375880689.bed/part-00003 /tmp/adamTestMvnb0spyFX/TempSuite1777774337375880689.bed/.part-00000.crc /tmp/adamTestMvnb0spyFX/TempSuite1777774337375880689.bed/part-00000 /tmp/adamTestMvnb0spyFX/TempSuite1777774337375880689.bed/part-00002 /tmp/adamTestMvnb0spyFX/TempSuite1777774337375880689.bed/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite1777774337375880689.bed/part-00001 /tmp/adamTestMvnb0spyFX/TempSuite1777774337375880689.bed/.part-00002.crc /tmp/adamTestMvnb0spyFX/bqsr1.sam6073001367710395417.sam /tmp/adamTestMvnb0spyFX/TempSuite8795065465128897046 /tmp/adamTestMvnb0spyFX/TempSuite9103938568954847393 /tmp/adamTestMvnb0spyFX/.TempSuite5043376504586824352_2.fq.crc /tmp/adamTestMvnb0spyFX/3225364177843892355 /tmp/adamTestMvnb0spyFX/3225364177843892355/sorted.vcf /tmp/adamTestMvnb0spyFX/3225364177843892355/.sorted.vcf.crc /tmp/adamTestMvnb0spyFX/TempSuite3544256723564020077.bed /tmp/adamTestMvnb0spyFX/TempSuite3544256723564020077.bed/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite3544256723564020077.bed/.part-00000.crc /tmp/adamTestMvnb0spyFX/TempSuite3544256723564020077.bed/part-00000 /tmp/adamTestMvnb0spyFX/TempSuite3544256723564020077.bed/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite1671174868635908692 /tmp/adamTestMvnb0spyFX/TempSuite6096740407961610084 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite8948463691720557949.bed /tmp/adamTestMvnb0spyFX/TempSuite6596439115828859404 /tmp/adamTestMvnb0spyFX/TempSuite7791921622583163787.adam /tmp/adamTestMvnb0spyFX/TempSuite7791921622583163787.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite7791921622583163787.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite7791921622583163787.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite7791921622583163787.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite7791921622583163787.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite7791921622583163787.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite7791921622583163787.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite7791921622583163787.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite7791921622583163787.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite7791921622583163787.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite7791921622583163787.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite7791921622583163787.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/TempSuite7791921622583163787.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/TempSuite7791921622583163787.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/.TempSuite4693194982570133225.sam.crc /tmp/adamTestMvnb0spyFX/TempSuite861490021961224226 /tmp/adamTestMvnb0spyFX/TempSuite670901659019026722.sam /tmp/adamTestMvnb0spyFX/TempSuite670901659019026722.sam/part-r-00000.sam /tmp/adamTestMvnb0spyFX/TempSuite670901659019026722.sam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite670901659019026722.sam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite670901659019026722.sam/.part-r-00000.sam.crc /tmp/adamTestMvnb0spyFX/TempSuite793330311733419624.adam /tmp/adamTestMvnb0spyFX/TempSuite793330311733419624.adam/part-00000-0abd6a80-59ee-45fe-b510-7dff9c7420ed-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite793330311733419624.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite793330311733419624.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite793330311733419624.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite793330311733419624.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite793330311733419624.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite793330311733419624.adam/.part-00000-0abd6a80-59ee-45fe-b510-7dff9c7420ed-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite793330311733419624.adam/_header /tmp/adamTestMvnb0spyFX/small.sam805130511561396575.sam /tmp/adamTestMvnb0spyFX/TempSuite3707592701191797215.adam /tmp/adamTestMvnb0spyFX/TempSuite3707592701191797215.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite3707592701191797215.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite3707592701191797215.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite3707592701191797215.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite3707592701191797215.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite3707592701191797215.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite3707592701191797215.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite3707592701191797215.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite3707592701191797215.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite3707592701191797215.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite1172402175753517606 /tmp/adamTestMvnb0spyFX/sorted-variants.vcf5886666975262602942.vcf /tmp/adamTestMvnb0spyFX/291161556441755798 /tmp/adamTestMvnb0spyFX/291161556441755798/artificial.cram /tmp/adamTestMvnb0spyFX/291161556441755798/artificial.cram/part-r-00000.cram /tmp/adamTestMvnb0spyFX/291161556441755798/artificial.cram/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/291161556441755798/artificial.cram/_SUCCESS /tmp/adamTestMvnb0spyFX/291161556441755798/artificial.cram/.part-r-00000.cram.crc /tmp/adamTestMvnb0spyFX/random.vcf3083896552020015002.vcf /tmp/adamTestMvnb0spyFX/TempSuite2662811578720574061.bed /tmp/adamTestMvnb0spyFX/TempSuite2662811578720574061.bed/.part-00001.crc /tmp/adamTestMvnb0spyFX/TempSuite2662811578720574061.bed/.part-00003.crc /tmp/adamTestMvnb0spyFX/TempSuite2662811578720574061.bed/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite2662811578720574061.bed/part-00003 /tmp/adamTestMvnb0spyFX/TempSuite2662811578720574061.bed/.part-00000.crc /tmp/adamTestMvnb0spyFX/TempSuite2662811578720574061.bed/part-00000 /tmp/adamTestMvnb0spyFX/TempSuite2662811578720574061.bed/part-00002 /tmp/adamTestMvnb0spyFX/TempSuite2662811578720574061.bed/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite2662811578720574061.bed/part-00001 /tmp/adamTestMvnb0spyFX/TempSuite2662811578720574061.bed/.part-00002.crc /tmp/adamTestMvnb0spyFX/TempSuite4269628080222825244.adam /tmp/adamTestMvnb0spyFX/TempSuite4269628080222825244.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite4269628080222825244.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite4269628080222825244.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite4269628080222825244.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite4269628080222825244.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite4269628080222825244.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite4269628080222825244.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite4269628080222825244.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite4269628080222825244.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite4269628080222825244.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite4269628080222825244.adam/_header /tmp/adamTestMvnb0spyFX/TempSuite4269628080222825244.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite5389574961379192399.bed /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite5389574961379192399.bed/.part-00001.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite5389574961379192399.bed/.part-00003.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite5389574961379192399.bed/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite5389574961379192399.bed/part-00003 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite5389574961379192399.bed/.part-00000.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite5389574961379192399.bed/part-00000 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite5389574961379192399.bed/part-00002 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite5389574961379192399.bed/_SUCCESS /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite5389574961379192399.bed/part-00001 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite5389574961379192399.bed/.part-00002.crc /tmp/adamTestMvnb0spyFX/TempSuite2801337272588941767.adam /tmp/adamTestMvnb0spyFX/TempSuite2801337272588941767.adam/referenceName=13 /tmp/adamTestMvnb0spyFX/TempSuite2801337272588941767.adam/referenceName=13/positionBin=0 /tmp/adamTestMvnb0spyFX/TempSuite2801337272588941767.adam/referenceName=13/positionBin=0/.part-00000-f0495cd1-e080-4dc8-aa2d-f0208219205f.c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite2801337272588941767.adam/referenceName=13/positionBin=0/part-00000-f0495cd1-e080-4dc8-aa2d-f0208219205f.c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite2801337272588941767.adam/referenceName=2 /tmp/adamTestMvnb0spyFX/TempSuite2801337272588941767.adam/referenceName=2/positionBin=0 /tmp/adamTestMvnb0spyFX/TempSuite2801337272588941767.adam/referenceName=2/positionBin=0/.part-00000-f0495cd1-e080-4dc8-aa2d-f0208219205f.c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite2801337272588941767.adam/referenceName=2/positionBin=0/part-00000-f0495cd1-e080-4dc8-aa2d-f0208219205f.c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite2801337272588941767.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite2801337272588941767.adam/._partitionedByStartPos.crc /tmp/adamTestMvnb0spyFX/TempSuite2801337272588941767.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite2801337272588941767.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite2801337272588941767.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite2801337272588941767.adam/_samples.avro /tmp/adamTestMvnb0spyFX/TempSuite2801337272588941767.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite2801337272588941767.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite2801337272588941767.adam/referenceName=1 /tmp/adamTestMvnb0spyFX/TempSuite2801337272588941767.adam/referenceName=1/positionBin=0 /tmp/adamTestMvnb0spyFX/TempSuite2801337272588941767.adam/referenceName=1/positionBin=0/.part-00000-f0495cd1-e080-4dc8-aa2d-f0208219205f.c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite2801337272588941767.adam/referenceName=1/positionBin=0/part-00000-f0495cd1-e080-4dc8-aa2d-f0208219205f.c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite2801337272588941767.adam/_header /tmp/adamTestMvnb0spyFX/TempSuite2801337272588941767.adam/_partitionedByStartPos /tmp/adamTestMvnb0spyFX/TempSuite206640718523830921 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite9094851234756476479 /tmp/adamTestMvnb0spyFX/5385625498563440423 /tmp/adamTestMvnb0spyFX/5385625498563440423/out.bam /tmp/adamTestMvnb0spyFX/5385625498563440423/out.bam_head /tmp/adamTestMvnb0spyFX/5385625498563440423/.out.bam.crc /tmp/adamTestMvnb0spyFX/5385625498563440423/out.bam_tail /tmp/adamTestMvnb0spyFX/5385625498563440423/out.bam_tail/.part-r-00002.bam.crc /tmp/adamTestMvnb0spyFX/5385625498563440423/out.bam_tail/part-r-00002.bam /tmp/adamTestMvnb0spyFX/5385625498563440423/out.bam_tail/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/5385625498563440423/out.bam_tail/part-r-00001.bam /tmp/adamTestMvnb0spyFX/5385625498563440423/out.bam_tail/_SUCCESS /tmp/adamTestMvnb0spyFX/5385625498563440423/out.bam_tail/part-r-00003.bam /tmp/adamTestMvnb0spyFX/5385625498563440423/out.bam_tail/.part-r-00003.bam.crc /tmp/adamTestMvnb0spyFX/5385625498563440423/out.bam_tail/.part-r-00000.bam.crc /tmp/adamTestMvnb0spyFX/5385625498563440423/out.bam_tail/part-r-00000.bam /tmp/adamTestMvnb0spyFX/5385625498563440423/out.bam_tail/.part-r-00001.bam.crc /tmp/adamTestMvnb0spyFX/5385625498563440423/.out.bam_head.crc /tmp/adamTestMvnb0spyFX/TempSuite8519304327923241283.bed /tmp/adamTestMvnb0spyFX/TempSuite8519304327923241283.bed/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite8519304327923241283.bed/.part-00000.crc /tmp/adamTestMvnb0spyFX/TempSuite8519304327923241283.bed/part-00000 /tmp/adamTestMvnb0spyFX/TempSuite8519304327923241283.bed/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite3023976470251164004 /tmp/adamTestMvnb0spyFX/.TempSuite1874933644947150351_1.fq.crc /tmp/adamTestMvnb0spyFX/TempSuite5540091630789655746.bed /tmp/adamTestMvnb0spyFX/TempSuite5540091630789655746.bed/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite5540091630789655746.bed/.part-00000.crc /tmp/adamTestMvnb0spyFX/TempSuite5540091630789655746.bed/part-00000 /tmp/adamTestMvnb0spyFX/TempSuite5540091630789655746.bed/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite2941598001741898828.bed /tmp/adamTestMvnb0spyFX/TempSuite2941598001741898828.bed/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite2941598001741898828.bed/.part-00000.crc /tmp/adamTestMvnb0spyFX/TempSuite2941598001741898828.bed/part-00000 /tmp/adamTestMvnb0spyFX/TempSuite2941598001741898828.bed/_SUCCESS /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite80652673520842769.adam /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite80652673520842769.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite80652673520842769.adam/part-r-00001.gz.parquet /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite80652673520842769.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite80652673520842769.adam/part-r-00002.gz.parquet /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite80652673520842769.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite80652673520842769.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite80652673520842769.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite80652673520842769.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite80652673520842769.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite80652673520842769.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite80652673520842769.adam/_metadata /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite80652673520842769.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite80652673520842769.adam/_common_metadata /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite80652673520842769.adam/_references.avro /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite80652673520842769.adam/part-r-00003.gz.parquet /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite80652673520842769.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite8461944749187514020.adam /tmp/adamTestMvnb0spyFX/TempSuite8461944749187514020.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite8461944749187514020.adam/.part-00000-92f70483-86bc-4068-811d-84f080b27bd1-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite8461944749187514020.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite8461944749187514020.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite8461944749187514020.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite8461944749187514020.adam/_samples.avro /tmp/adamTestMvnb0spyFX/TempSuite8461944749187514020.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite8461944749187514020.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite8461944749187514020.adam/_header /tmp/adamTestMvnb0spyFX/TempSuite8461944749187514020.adam/part-00000-92f70483-86bc-4068-811d-84f080b27bd1-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/ReadDatasetSuite4014605438659490751 /tmp/adamTestMvnb0spyFX/random.vcf7359739961559946715.vcf /tmp/adamTestMvnb0spyFX/TempSuite1479682006642804465.adam /tmp/adamTestMvnb0spyFX/TempSuite1479682006642804465.adam/part-00000-d7def0fd-2693-4752-a736-d29e527778be-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite1479682006642804465.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite1479682006642804465.adam/.part-00005-d7def0fd-2693-4752-a736-d29e527778be-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite1479682006642804465.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite1479682006642804465.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite1479682006642804465.adam/.part-00003-d7def0fd-2693-4752-a736-d29e527778be-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite1479682006642804465.adam/_samples.avro /tmp/adamTestMvnb0spyFX/TempSuite1479682006642804465.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite1479682006642804465.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite1479682006642804465.adam/.part-00000-d7def0fd-2693-4752-a736-d29e527778be-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite1479682006642804465.adam/part-00003-d7def0fd-2693-4752-a736-d29e527778be-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite1479682006642804465.adam/part-00005-d7def0fd-2693-4752-a736-d29e527778be-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite4817973662293044709 /tmp/adamTestMvnb0spyFX/TempSuite6812267723823007882 /tmp/adamTestMvnb0spyFX/7934920761351685802 /tmp/adamTestMvnb0spyFX/7934920761351685802/unordered.adam /tmp/adamTestMvnb0spyFX/7934920761351685802/unordered.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/7934920761351685802/unordered.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/7934920761351685802/unordered.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/7934920761351685802/unordered.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/7934920761351685802/unordered.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/7934920761351685802/unordered.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/7934920761351685802/unordered.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/7934920761351685802/unordered.adam/_metadata /tmp/adamTestMvnb0spyFX/7934920761351685802/unordered.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/7934920761351685802/unordered.adam/_common_metadata /tmp/adamTestMvnb0spyFX/7934920761351685802/unordered.adam/_references.avro /tmp/adamTestMvnb0spyFX/7934920761351685802/unordered.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/7934920761351685802/unordered.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/7934920761351685802/unordered.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite5283385833118110479 /tmp/adamTestMvnb0spyFX/TempSuite6995010579723676711 /tmp/adamTestMvnb0spyFX/TempSuite5344055516490893797 /tmp/adamTestMvnb0spyFX/TempSuite8017101356362029278.adam /tmp/adamTestMvnb0spyFX/TempSuite8017101356362029278.adam/.part-00000-782c4e94-47b3-4fa5-9591-41931ef37eda-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite8017101356362029278.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite8017101356362029278.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite8017101356362029278.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite8017101356362029278.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite8017101356362029278.adam/part-00000-782c4e94-47b3-4fa5-9591-41931ef37eda-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite7223871373399459496 /tmp/adamTestMvnb0spyFX/TempSuite547244877131440021.adam /tmp/adamTestMvnb0spyFX/TempSuite547244877131440021.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite547244877131440021.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite547244877131440021.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite547244877131440021.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite547244877131440021.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite547244877131440021.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite547244877131440021.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite547244877131440021.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite547244877131440021.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite547244877131440021.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite547244877131440021.adam/_header /tmp/adamTestMvnb0spyFX/TempSuite547244877131440021.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite9036578199426598033.bed /tmp/adamTestMvnb0spyFX/TempSuite9036578199426598033.bed/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite9036578199426598033.bed/.part-00000.crc /tmp/adamTestMvnb0spyFX/TempSuite9036578199426598033.bed/part-00000 /tmp/adamTestMvnb0spyFX/TempSuite9036578199426598033.bed/_SUCCESS /tmp/adamTestMvnb0spyFX/bqsr1.sam6150435966954643956.sam /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite9094851234756476479.bed /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite9094851234756476479.bed/.part-00001.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite9094851234756476479.bed/.part-00003.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite9094851234756476479.bed/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite9094851234756476479.bed/part-00003 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite9094851234756476479.bed/.part-00000.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite9094851234756476479.bed/part-00000 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite9094851234756476479.bed/part-00002 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite9094851234756476479.bed/_SUCCESS /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite9094851234756476479.bed/part-00001 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite9094851234756476479.bed/.part-00002.crc /tmp/adamTestMvnb0spyFX/636881345156994885 /tmp/adamTestMvnb0spyFX/636881345156994885/.ordered.sam.crc /tmp/adamTestMvnb0spyFX/636881345156994885/ordered.sam /tmp/adamTestMvnb0spyFX/4706872132955415011 /tmp/adamTestMvnb0spyFX/4706872132955415011/unordered.sam /tmp/adamTestMvnb0spyFX/4706872132955415011/.unordered.sam.crc /tmp/adamTestMvnb0spyFX/TempSuite8277560239945508869 /tmp/adamTestMvnb0spyFX/TempSuite2506962681233031650.adam /tmp/adamTestMvnb0spyFX/TempSuite2506962681233031650.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite2506962681233031650.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite2506962681233031650.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite2506962681233031650.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite2506962681233031650.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite2506962681233031650.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite2506962681233031650.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite2506962681233031650.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite2506962681233031650.adam/_samples.avro /tmp/adamTestMvnb0spyFX/TempSuite2506962681233031650.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite2506962681233031650.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite2506962681233031650.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite2506962681233031650.adam/_header /tmp/adamTestMvnb0spyFX/TempSuite2506962681233031650.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite3482956658394923836 /tmp/adamTestMvnb0spyFX/ordered.sam4535540007500531893.sam /tmp/adamTestMvnb0spyFX/TempSuite2052500685468094161.adam /tmp/adamTestMvnb0spyFX/TempSuite2052500685468094161.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite2052500685468094161.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite2052500685468094161.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite2052500685468094161.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite2052500685468094161.adam/_samples.avro /tmp/adamTestMvnb0spyFX/TempSuite2052500685468094161.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite2052500685468094161.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite2052500685468094161.adam/.part-00000-39729fab-8e79-4559-ac79-815a1cef5a20-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite2052500685468094161.adam/_header /tmp/adamTestMvnb0spyFX/TempSuite2052500685468094161.adam/part-00000-39729fab-8e79-4559-ac79-815a1cef5a20-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite7855205283845808752.adam /tmp/adamTestMvnb0spyFX/TempSuite7855205283845808752.adam/.part-00002-0980e346-f53e-465e-b080-20a0848c8618-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite7855205283845808752.adam/part-00000-0980e346-f53e-465e-b080-20a0848c8618-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite7855205283845808752.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite7855205283845808752.adam/part-00001-0980e346-f53e-465e-b080-20a0848c8618-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite7855205283845808752.adam/part-00002-0980e346-f53e-465e-b080-20a0848c8618-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite7855205283845808752.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite7855205283845808752.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite7855205283845808752.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite7855205283845808752.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite7855205283845808752.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite7855205283845808752.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/TempSuite7855205283845808752.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/TempSuite7855205283845808752.adam/.part-00001-0980e346-f53e-465e-b080-20a0848c8618-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite7855205283845808752.adam/.part-00000-0980e346-f53e-465e-b080-20a0848c8618-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite489899670140203810.sam /tmp/adamTestMvnb0spyFX/TempSuite4810999506415815297 /tmp/adamTestMvnb0spyFX/TempSuite6558262601511113577 /tmp/adamTestMvnb0spyFX/TempSuite1985776258197734722 /tmp/adamTestMvnb0spyFX/TempSuite218921967155764417 /tmp/adamTestMvnb0spyFX/TempSuite2052500685468094161 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite7950550038912313700 /tmp/adamTestMvnb0spyFX/TempSuite5043376504586824352 /tmp/adamTestMvnb0spyFX/TempSuite5549825207016188261.adam /tmp/adamTestMvnb0spyFX/TempSuite5549825207016188261.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite5549825207016188261.adam/part-r-00001.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite5549825207016188261.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite5549825207016188261.adam/part-r-00002.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite5549825207016188261.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite5549825207016188261.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite5549825207016188261.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite5549825207016188261.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite5549825207016188261.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite5549825207016188261.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite5549825207016188261.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite5549825207016188261.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite5549825207016188261.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite5549825207016188261.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite5549825207016188261.adam/part-r-00003.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite5549825207016188261.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite8334162159659703150 /tmp/adamTestMvnb0spyFX/TempSuite8507059897789343805.adam /tmp/adamTestMvnb0spyFX/TempSuite8507059897789343805.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite8507059897789343805.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite8507059897789343805.adam/.part-00000-9e2a13a8-bd6b-4b1d-b747-e68ae73ce992-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite8507059897789343805.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite8507059897789343805.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite8507059897789343805.adam/_samples.avro /tmp/adamTestMvnb0spyFX/TempSuite8507059897789343805.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite8507059897789343805.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite8507059897789343805.adam/_header /tmp/adamTestMvnb0spyFX/TempSuite8507059897789343805.adam/part-00000-9e2a13a8-bd6b-4b1d-b747-e68ae73ce992-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite3707592701191797215 /tmp/adamTestMvnb0spyFX/random.vcf2334494278268747662.vcf /tmp/adamTestMvnb0spyFX/TempSuite4145556623655278958 /tmp/adamTestMvnb0spyFX/hg19.chrM.2bit263602625947318218.chrM.2bit /tmp/adamTestMvnb0spyFX/TempSuite152520522698424516 /tmp/adamTestMvnb0spyFX/TempSuite4342039385393611507.bed /tmp/adamTestMvnb0spyFX/TempSuite4342039385393611507.bed/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite4342039385393611507.bed/.part-00000.crc /tmp/adamTestMvnb0spyFX/TempSuite4342039385393611507.bed/part-00000 /tmp/adamTestMvnb0spyFX/TempSuite4342039385393611507.bed/_SUCCESS /tmp/adamTestMvnb0spyFX/SliceDatasetSuite6852250704612326463 /tmp/adamTestMvnb0spyFX/TempSuite6258110988387097674.adam /tmp/adamTestMvnb0spyFX/TempSuite6258110988387097674.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite6258110988387097674.adam/part-r-00001.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite6258110988387097674.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite6258110988387097674.adam/part-r-00002.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite6258110988387097674.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite6258110988387097674.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite6258110988387097674.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite6258110988387097674.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite6258110988387097674.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite6258110988387097674.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite6258110988387097674.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite6258110988387097674.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite6258110988387097674.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite6258110988387097674.adam/_samples.avro /tmp/adamTestMvnb0spyFX/TempSuite6258110988387097674.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite6258110988387097674.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite6258110988387097674.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite6258110988387097674.adam/part-r-00003.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite6258110988387097674.adam/_header /tmp/adamTestMvnb0spyFX/TempSuite6258110988387097674.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite8798664605796015327 /tmp/adamTestMvnb0spyFX/TempSuite13586325318363150.bed /tmp/adamTestMvnb0spyFX/TempSuite13586325318363150.bed/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite13586325318363150.bed/.part-00000.crc /tmp/adamTestMvnb0spyFX/TempSuite13586325318363150.bed/part-00000 /tmp/adamTestMvnb0spyFX/TempSuite13586325318363150.bed/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite8649239163587385585.fq /tmp/adamTestMvnb0spyFX/TempSuite8649239163587385585.fq/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite8649239163587385585.fq/.part-00000.crc /tmp/adamTestMvnb0spyFX/TempSuite8649239163587385585.fq/part-00000 /tmp/adamTestMvnb0spyFX/TempSuite8649239163587385585.fq/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite2805036308592261235 /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite2111738397040297335 /tmp/adamTestMvnb0spyFX/TempSuite1018537110273258886 /tmp/adamTestMvnb0spyFX/TempSuite7983249371441561085 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite4128773344872962695 /tmp/adamTestMvnb0spyFX/ordered.sam2196864307993240144.sam /tmp/adamTestMvnb0spyFX/TempSuite7791921622583163787 /tmp/adamTestMvnb0spyFX/TempSuite1206695266723538973.adam /tmp/adamTestMvnb0spyFX/TempSuite1206695266723538973.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite1206695266723538973.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite1206695266723538973.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite1206695266723538973.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite1206695266723538973.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite1206695266723538973.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite1206695266723538973.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite1206695266723538973.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite1206695266723538973.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite1206695266723538973.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite1206695266723538973.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite1206695266723538973.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/TempSuite1206695266723538973.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/TempSuite1206695266723538973.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite3011752689495784339 /tmp/adamTestMvnb0spyFX/TempSuite1074130116131657962 /tmp/adamTestMvnb0spyFX/TempSuite527259785046505079 /tmp/adamTestMvnb0spyFX/TempSuite4764900798734993731.adam /tmp/adamTestMvnb0spyFX/TempSuite4764900798734993731.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite4764900798734993731.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite4764900798734993731.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite4764900798734993731.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite4764900798734993731.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite4764900798734993731.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite4764900798734993731.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite4764900798734993731.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite4764900798734993731.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite4764900798734993731.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite4764900798734993731.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite4764900798734993731.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/TempSuite4764900798734993731.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/TempSuite4764900798734993731.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite2504969269653202556 /tmp/adamTestMvnb0spyFX/TempSuite7341459607662443396 /tmp/adamTestMvnb0spyFX/TempSuite2808346497295567278.adam /tmp/adamTestMvnb0spyFX/TempSuite2808346497295567278.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite2808346497295567278.adam/._partitionedByStartPos.crc /tmp/adamTestMvnb0spyFX/TempSuite2808346497295567278.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite2808346497295567278.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite2808346497295567278.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite2808346497295567278.adam/_samples.avro /tmp/adamTestMvnb0spyFX/TempSuite2808346497295567278.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite2808346497295567278.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite2808346497295567278.adam/referenceName=1 /tmp/adamTestMvnb0spyFX/TempSuite2808346497295567278.adam/referenceName=1/positionBin=0 /tmp/adamTestMvnb0spyFX/TempSuite2808346497295567278.adam/referenceName=1/positionBin=0/.part-00000-a1673e92-d78f-41fd-aa8c-1a9a20cb4549.c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite2808346497295567278.adam/referenceName=1/positionBin=0/part-00000-a1673e92-d78f-41fd-aa8c-1a9a20cb4549.c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite2808346497295567278.adam/_header /tmp/adamTestMvnb0spyFX/TempSuite2808346497295567278.adam/_partitionedByStartPos /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite9212548649360124404 /tmp/adamTestMvnb0spyFX/TempSuite2454127510220294066.sam /tmp/adamTestMvnb0spyFX/TempSuite2454127510220294066.sam/part-r-00000.sam /tmp/adamTestMvnb0spyFX/TempSuite2454127510220294066.sam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite2454127510220294066.sam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite2454127510220294066.sam/.part-r-00000.sam.crc /tmp/adamTestMvnb0spyFX/sample_coverage.bed1127976783051469524.bed /tmp/adamTestMvnb0spyFX/TempSuite2417503168442794278.adam /tmp/adamTestMvnb0spyFX/TempSuite2417503168442794278.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite2417503168442794278.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite2417503168442794278.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite2417503168442794278.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite2417503168442794278.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite2417503168442794278.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite2417503168442794278.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite2417503168442794278.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite2417503168442794278.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite2417503168442794278.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite2417503168442794278.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite2417503168442794278.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/TempSuite2417503168442794278.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/TempSuite2417503168442794278.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite2099431306684589984 /tmp/adamTestMvnb0spyFX/465261588912842102 /tmp/adamTestMvnb0spyFX/465261588912842102/sorted-variants.vcf /tmp/adamTestMvnb0spyFX/465261588912842102/.sorted-variants.vcf.crc /tmp/adamTestMvnb0spyFX/TempSuite280989017013718100.fq /tmp/adamTestMvnb0spyFX/random.vcf5368708635491630129.vcf /tmp/adamTestMvnb0spyFX/8764661833641561776 /tmp/adamTestMvnb0spyFX/8764661833641561776/.ordered.sam.crc /tmp/adamTestMvnb0spyFX/8764661833641561776/ordered.sam /tmp/adamTestMvnb0spyFX/TempSuite5283385833118110479.bed /tmp/adamTestMvnb0spyFX/TempSuite5283385833118110479.bed/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite5283385833118110479.bed/.part-00000.crc /tmp/adamTestMvnb0spyFX/TempSuite5283385833118110479.bed/part-00000 /tmp/adamTestMvnb0spyFX/TempSuite5283385833118110479.bed/_SUCCESS /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite2266578117613848697.gff3 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite2266578117613848697.gff3/.part-00001.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite2266578117613848697.gff3/.part-00003.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite2266578117613848697.gff3/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite2266578117613848697.gff3/part-00003 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite2266578117613848697.gff3/.part-00000.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite2266578117613848697.gff3/part-00000 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite2266578117613848697.gff3/part-00002 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite2266578117613848697.gff3/_SUCCESS /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite2266578117613848697.gff3/part-00001 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite2266578117613848697.gff3/.part-00002.crc /tmp/adamTestMvnb0spyFX/TempSuite3863731658561831373.adam /tmp/adamTestMvnb0spyFX/TempSuite3863731658561831373.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite3863731658561831373.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite3863731658561831373.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite3863731658561831373.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite3863731658561831373.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite3863731658561831373.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite3863731658561831373.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite3863731658561831373.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite3863731658561831373.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite3863731658561831373.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite3863731658561831373.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite3863731658561831373.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/TempSuite3863731658561831373.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/TempSuite3863731658561831373.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite3203790703652865426.adam /tmp/adamTestMvnb0spyFX/TempSuite3203790703652865426.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite3203790703652865426.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite3203790703652865426.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite3203790703652865426.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite3203790703652865426.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite3203790703652865426.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite3203790703652865426.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite3203790703652865426.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite3203790703652865426.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite3203790703652865426.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite3203790703652865426.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite3203790703652865426.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/TempSuite3203790703652865426.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/TempSuite3203790703652865426.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite2157464563769473737 /tmp/adamTestMvnb0spyFX/TempSuite7223871373399459496.adam /tmp/adamTestMvnb0spyFX/TempSuite7223871373399459496.adam/part-00000-a1837414-e498-481c-9cce-c2782aacacd4-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite7223871373399459496.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite7223871373399459496.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite7223871373399459496.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite7223871373399459496.adam/.part-00000-a1837414-e498-481c-9cce-c2782aacacd4-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite7223871373399459496.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite7223871373399459496.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite7223871373399459496.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite7223871373399459496.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/TempSuite7223871373399459496.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/TempSuite4801614860870049683 /tmp/adamTestMvnb0spyFX/TempSuite3023976470251164004.adam /tmp/adamTestMvnb0spyFX/TempSuite3023976470251164004.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite3023976470251164004.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite3023976470251164004.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite3023976470251164004.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite3023976470251164004.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite3023976470251164004.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite3023976470251164004.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite3023976470251164004.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite3023976470251164004.adam/_samples.avro /tmp/adamTestMvnb0spyFX/TempSuite3023976470251164004.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite3023976470251164004.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite3023976470251164004.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite3023976470251164004.adam/_header /tmp/adamTestMvnb0spyFX/TempSuite3023976470251164004.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/trinity.fa2888805399983853274.fa /tmp/adamTestMvnb0spyFX/TempSuite4145556623655278958.bed /tmp/adamTestMvnb0spyFX/TempSuite4145556623655278958.bed/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite4145556623655278958.bed/.part-00000.crc /tmp/adamTestMvnb0spyFX/TempSuite4145556623655278958.bed/part-00000 /tmp/adamTestMvnb0spyFX/TempSuite4145556623655278958.bed/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite4022984222130012641.bam /tmp/adamTestMvnb0spyFX/TempSuite4022984222130012641.bam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite4022984222130012641.bam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite4022984222130012641.bam/.part-r-00000.bam.crc /tmp/adamTestMvnb0spyFX/TempSuite4022984222130012641.bam/part-r-00000.bam /tmp/adamTestMvnb0spyFX/TempSuite4342039385393611507 /tmp/adamTestMvnb0spyFX/TempSuite879051517252859089 /tmp/adamTestMvnb0spyFX/TempSuite3133380425211980074.adam /tmp/adamTestMvnb0spyFX/TempSuite3133380425211980074.adam/.part-00000-f293604a-182e-472e-9c28-242c30e37282-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite3133380425211980074.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite3133380425211980074.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite3133380425211980074.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite3133380425211980074.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite3133380425211980074.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite3133380425211980074.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite3133380425211980074.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/TempSuite3133380425211980074.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/TempSuite3133380425211980074.adam/part-00000-f293604a-182e-472e-9c28-242c30e37282-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/4211444534092370248 /tmp/adamTestMvnb0spyFX/4211444534092370248/unordered.sam /tmp/adamTestMvnb0spyFX/4211444534092370248/.unordered.sam.crc /tmp/adamTestMvnb0spyFX/TempSuite1195215975505903255.adam /tmp/adamTestMvnb0spyFX/TempSuite1195215975505903255.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite1195215975505903255.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite1195215975505903255.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite1195215975505903255.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite1195215975505903255.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite1195215975505903255.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite1195215975505903255.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite1195215975505903255.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite1195215975505903255.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite1195215975505903255.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite1195215975505903255.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite1195215975505903255.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/TempSuite1195215975505903255.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/TempSuite1195215975505903255.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite2157464563769473737.adam /tmp/adamTestMvnb0spyFX/TempSuite2157464563769473737.adam/part-00000-1f434a3c-e0a4-41dd-bde4-5b2de2e6f89e-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite2157464563769473737.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite2157464563769473737.adam/.part-00000-1f434a3c-e0a4-41dd-bde4-5b2de2e6f89e-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite2157464563769473737.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite2157464563769473737.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite2157464563769473737.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite2157464563769473737.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite2157464563769473737.adam/_header /tmp/adamTestMvnb0spyFX/TempSuite4187671551851064268 /tmp/adamTestMvnb0spyFX/.FeatureDatasetFunctionsSuite3185782489762472486.bed.crc /tmp/adamTestMvnb0spyFX/TempSuite4891748965657131770.fq /tmp/adamTestMvnb0spyFX/TempSuite4891748965657131770.fq/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite4891748965657131770.fq/.part-00000.crc /tmp/adamTestMvnb0spyFX/TempSuite4891748965657131770.fq/part-00000 /tmp/adamTestMvnb0spyFX/TempSuite4891748965657131770.fq/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite7706341588082120499 /tmp/adamTestMvnb0spyFX/TempSuite6392642966626907726 /tmp/adamTestMvnb0spyFX/TempSuite7583285953647216540 /tmp/adamTestMvnb0spyFX/random.vcf5428365474673118951.vcf /tmp/adamTestMvnb0spyFX/bqsr15944509029229175597 /tmp/adamTestMvnb0spyFX/bqsr15944509029229175597/.bqsr1.sam.crc /tmp/adamTestMvnb0spyFX/bqsr15944509029229175597/bqsr1.sam /tmp/adamTestMvnb0spyFX/TempSuite8943576146353719399 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite1972565019332031078.gtf /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite80652673520842769 /tmp/adamTestMvnb0spyFX/TempSuite2092335097302324231 /tmp/adamTestMvnb0spyFX/TempSuite6606134447898921838 /tmp/adamTestMvnb0spyFX/TempSuite2954487504178362748.bed /tmp/adamTestMvnb0spyFX/TempSuite2954487504178362748.bed/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite2954487504178362748.bed/.part-00000.crc /tmp/adamTestMvnb0spyFX/TempSuite2954487504178362748.bed/part-00000 /tmp/adamTestMvnb0spyFX/TempSuite2954487504178362748.bed/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite25448542292376038.bed /tmp/adamTestMvnb0spyFX/TempSuite25448542292376038.bed/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite25448542292376038.bed/.part-00000.crc /tmp/adamTestMvnb0spyFX/TempSuite25448542292376038.bed/part-00000 /tmp/adamTestMvnb0spyFX/TempSuite25448542292376038.bed/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite8975635600992361420 /tmp/adamTestMvnb0spyFX/TempSuite3542982071313764933 /tmp/adamTestMvnb0spyFX/SliceDatasetSuite8342876812053830693.fasta /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite2737865839480813740 /tmp/adamTestMvnb0spyFX/TempSuite3420108552896156753.adam /tmp/adamTestMvnb0spyFX/TempSuite3420108552896156753.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite3420108552896156753.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite3420108552896156753.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite3420108552896156753.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite3420108552896156753.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite3420108552896156753.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite3420108552896156753.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite3420108552896156753.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite3420108552896156753.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite3420108552896156753.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite3420108552896156753.adam/_header /tmp/adamTestMvnb0spyFX/TempSuite3420108552896156753.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite4704335788886769002.adam /tmp/adamTestMvnb0spyFX/TempSuite4704335788886769002.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite4704335788886769002.adam/part-r-00001.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite4704335788886769002.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite4704335788886769002.adam/part-r-00002.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite4704335788886769002.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite4704335788886769002.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite4704335788886769002.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite4704335788886769002.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite4704335788886769002.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite4704335788886769002.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite4704335788886769002.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite4704335788886769002.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite4704335788886769002.adam/_samples.avro /tmp/adamTestMvnb0spyFX/TempSuite4704335788886769002.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite4704335788886769002.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite4704335788886769002.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite4704335788886769002.adam/part-r-00003.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite4704335788886769002.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/trinity.fa6800727254734385215.fa /tmp/adamTestMvnb0spyFX/5144061068818002831 /tmp/adamTestMvnb0spyFX/5144061068818002831/.ordered.sam.crc /tmp/adamTestMvnb0spyFX/5144061068818002831/ordered.sam /tmp/adamTestMvnb0spyFX/ReadDatasetSuite5293798667778524838 /tmp/adamTestMvnb0spyFX/TempSuite4905364437222019019.fa /tmp/adamTestMvnb0spyFX/TempSuite4905364437222019019.fa/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite4905364437222019019.fa/.part-00000.crc /tmp/adamTestMvnb0spyFX/TempSuite4905364437222019019.fa/part-00000 /tmp/adamTestMvnb0spyFX/TempSuite4905364437222019019.fa/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite3409251235482384259 /tmp/adamTestMvnb0spyFX/TempSuite4765131985617864125 /tmp/adamTestMvnb0spyFX/TempSuite756233147054976027 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite3019859558602236433.narrowPeak /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite3019859558602236433.narrowPeak/.part-00001.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite3019859558602236433.narrowPeak/.part-00003.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite3019859558602236433.narrowPeak/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite3019859558602236433.narrowPeak/part-00003 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite3019859558602236433.narrowPeak/.part-00000.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite3019859558602236433.narrowPeak/part-00000 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite3019859558602236433.narrowPeak/part-00002 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite3019859558602236433.narrowPeak/_SUCCESS /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite3019859558602236433.narrowPeak/part-00001 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite3019859558602236433.narrowPeak/.part-00002.crc /tmp/adamTestMvnb0spyFX/TempSuite3570729803937158363.fq /tmp/adamTestMvnb0spyFX/TempSuite3570729803937158363.fq/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite3570729803937158363.fq/.part-00000.crc /tmp/adamTestMvnb0spyFX/TempSuite3570729803937158363.fq/part-00000 /tmp/adamTestMvnb0spyFX/TempSuite3570729803937158363.fq/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite3773853887775876415 /tmp/adamTestMvnb0spyFX/sample_coverage.bed7571419164114168978.bed /tmp/adamTestMvnb0spyFX/bqsr1.sam5480571909724098512.sam /tmp/adamTestMvnb0spyFX/TempSuite3110121416558635719.bed /tmp/adamTestMvnb0spyFX/TempSuite3110121416558635719.bed/.part-00001.crc /tmp/adamTestMvnb0spyFX/TempSuite3110121416558635719.bed/.part-00003.crc /tmp/adamTestMvnb0spyFX/TempSuite3110121416558635719.bed/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite3110121416558635719.bed/part-00003 /tmp/adamTestMvnb0spyFX/TempSuite3110121416558635719.bed/.part-00000.crc /tmp/adamTestMvnb0spyFX/TempSuite3110121416558635719.bed/part-00000 /tmp/adamTestMvnb0spyFX/TempSuite3110121416558635719.bed/part-00002 /tmp/adamTestMvnb0spyFX/TempSuite3110121416558635719.bed/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite3110121416558635719.bed/part-00001 /tmp/adamTestMvnb0spyFX/TempSuite3110121416558635719.bed/.part-00002.crc /tmp/adamTestMvnb0spyFX/1119985319128747498 /tmp/adamTestMvnb0spyFX/1119985319128747498/.ordered.sam.crc /tmp/adamTestMvnb0spyFX/1119985319128747498/ordered.sam /tmp/adamTestMvnb0spyFX/TempSuite9064501539824233078_1.fq /tmp/adamTestMvnb0spyFX/TempSuite9064501539824233078_1.fq/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite9064501539824233078_1.fq/.part-00000.crc /tmp/adamTestMvnb0spyFX/TempSuite9064501539824233078_1.fq/part-00000 /tmp/adamTestMvnb0spyFX/TempSuite9064501539824233078_1.fq/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite8881417049216950212 /tmp/adamTestMvnb0spyFX/TempSuite2611220917923052491.adam /tmp/adamTestMvnb0spyFX/TempSuite2611220917923052491.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite2611220917923052491.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite2611220917923052491.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite2611220917923052491.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite2611220917923052491.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite2611220917923052491.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite2611220917923052491.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite2611220917923052491.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite2611220917923052491.adam/_samples.avro /tmp/adamTestMvnb0spyFX/TempSuite2611220917923052491.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite2611220917923052491.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite2611220917923052491.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite2611220917923052491.adam/_header /tmp/adamTestMvnb0spyFX/TempSuite2611220917923052491.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite25448542292376038 /tmp/adamTestMvnb0spyFX/TempSuite1671174868635908692.adam /tmp/adamTestMvnb0spyFX/TempSuite1671174868635908692.adam/.part-00001-9265833c-ffca-4ce1-92a1-e3d269c29534-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite1671174868635908692.adam/part-00000-9265833c-ffca-4ce1-92a1-e3d269c29534-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite1671174868635908692.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite1671174868635908692.adam/part-00002-9265833c-ffca-4ce1-92a1-e3d269c29534-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite1671174868635908692.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite1671174868635908692.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite1671174868635908692.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite1671174868635908692.adam/.part-00002-9265833c-ffca-4ce1-92a1-e3d269c29534-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite1671174868635908692.adam/_samples.avro /tmp/adamTestMvnb0spyFX/TempSuite1671174868635908692.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite1671174868635908692.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite1671174868635908692.adam/_header /tmp/adamTestMvnb0spyFX/TempSuite1671174868635908692.adam/part-00001-9265833c-ffca-4ce1-92a1-e3d269c29534-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite1671174868635908692.adam/.part-00000-9265833c-ffca-4ce1-92a1-e3d269c29534-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite3183015719143035137 /tmp/adamTestMvnb0spyFX/ReadDatasetSuite7544764597848270573.adam /tmp/adamTestMvnb0spyFX/ReadDatasetSuite7544764597848270573.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnb0spyFX/ReadDatasetSuite7544764597848270573.adam/part-r-00001.gz.parquet /tmp/adamTestMvnb0spyFX/ReadDatasetSuite7544764597848270573.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/ReadDatasetSuite7544764597848270573.adam/part-r-00002.gz.parquet /tmp/adamTestMvnb0spyFX/ReadDatasetSuite7544764597848270573.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/ReadDatasetSuite7544764597848270573.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/ReadDatasetSuite7544764597848270573.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/ReadDatasetSuite7544764597848270573.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/ReadDatasetSuite7544764597848270573.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/ReadDatasetSuite7544764597848270573.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnb0spyFX/ReadDatasetSuite7544764597848270573.adam/_metadata /tmp/adamTestMvnb0spyFX/ReadDatasetSuite7544764597848270573.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnb0spyFX/ReadDatasetSuite7544764597848270573.adam/_common_metadata /tmp/adamTestMvnb0spyFX/ReadDatasetSuite7544764597848270573.adam/_references.avro /tmp/adamTestMvnb0spyFX/ReadDatasetSuite7544764597848270573.adam/part-r-00003.gz.parquet /tmp/adamTestMvnb0spyFX/ReadDatasetSuite7544764597848270573.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite489899670140203810 /tmp/adamTestMvnb0spyFX/reads12348643259686349004 /tmp/adamTestMvnb0spyFX/reads12348643259686349004/reads12.sam /tmp/adamTestMvnb0spyFX/reads12348643259686349004/reads12.sam/part-r-00000.sam /tmp/adamTestMvnb0spyFX/reads12348643259686349004/reads12.sam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/reads12348643259686349004/reads12.sam/_SUCCESS /tmp/adamTestMvnb0spyFX/reads12348643259686349004/reads12.sam/.part-r-00000.sam.crc /tmp/adamTestMvnb0spyFX/ReadDatasetSuite6821207371022827668.adam /tmp/adamTestMvnb0spyFX/ReadDatasetSuite6821207371022827668.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnb0spyFX/ReadDatasetSuite6821207371022827668.adam/part-r-00001.gz.parquet /tmp/adamTestMvnb0spyFX/ReadDatasetSuite6821207371022827668.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/ReadDatasetSuite6821207371022827668.adam/part-r-00002.gz.parquet /tmp/adamTestMvnb0spyFX/ReadDatasetSuite6821207371022827668.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/ReadDatasetSuite6821207371022827668.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/ReadDatasetSuite6821207371022827668.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/ReadDatasetSuite6821207371022827668.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/ReadDatasetSuite6821207371022827668.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/ReadDatasetSuite6821207371022827668.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnb0spyFX/ReadDatasetSuite6821207371022827668.adam/_metadata /tmp/adamTestMvnb0spyFX/ReadDatasetSuite6821207371022827668.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnb0spyFX/ReadDatasetSuite6821207371022827668.adam/_common_metadata /tmp/adamTestMvnb0spyFX/ReadDatasetSuite6821207371022827668.adam/_references.avro /tmp/adamTestMvnb0spyFX/ReadDatasetSuite6821207371022827668.adam/part-r-00003.gz.parquet /tmp/adamTestMvnb0spyFX/ReadDatasetSuite6821207371022827668.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/artificial.cram460886666469346591.cram /tmp/adamTestMvnb0spyFX/TempSuite672931587038074094.fq /tmp/adamTestMvnb0spyFX/TempSuite672931587038074094.fq/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite672931587038074094.fq/.part-00000.crc /tmp/adamTestMvnb0spyFX/TempSuite672931587038074094.fq/part-00000 /tmp/adamTestMvnb0spyFX/TempSuite672931587038074094.fq/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite5627937008241549877.adam /tmp/adamTestMvnb0spyFX/TempSuite5627937008241549877.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite5627937008241549877.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite5627937008241549877.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite5627937008241549877.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite5627937008241549877.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite5627937008241549877.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite5627937008241549877.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite5627937008241549877.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite5627937008241549877.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite5627937008241549877.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite5627937008241549877.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite5627937008241549877.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/TempSuite5627937008241549877.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/TempSuite5627937008241549877.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite3804408563827794035.adam /tmp/adamTestMvnb0spyFX/TempSuite3804408563827794035.adam/part-00000-3fabde59-72ad-43b6-9f4f-33dd1afc059b-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite3804408563827794035.adam/.part-00000-3fabde59-72ad-43b6-9f4f-33dd1afc059b-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite3804408563827794035.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite3804408563827794035.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite3804408563827794035.adam/part-00001-3fabde59-72ad-43b6-9f4f-33dd1afc059b-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite3804408563827794035.adam/.part-00001-3fabde59-72ad-43b6-9f4f-33dd1afc059b-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite3804408563827794035.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite3804408563827794035.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite3804408563827794035.adam/part-00002-3fabde59-72ad-43b6-9f4f-33dd1afc059b-c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite3804408563827794035.adam/.part-00002-3fabde59-72ad-43b6-9f4f-33dd1afc059b-c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite6312963797152359819 /tmp/adamTestMvnb0spyFX/TempSuite7923028727365244597.sam /tmp/adamTestMvnb0spyFX/TempSuite7923028727365244597.sam/part-r-00000.sam /tmp/adamTestMvnb0spyFX/TempSuite7923028727365244597.sam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite7923028727365244597.sam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite7923028727365244597.sam/.part-r-00000.sam.crc /tmp/adamTestMvnb0spyFX/javaAC6980818398619624451 /tmp/adamTestMvnb0spyFX/javaAC6980818398619624451/testRdd.coverage.adam /tmp/adamTestMvnb0spyFX/javaAC6980818398619624451/testRdd.coverage.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnb0spyFX/javaAC6980818398619624451/testRdd.coverage.adam/part-r-00001.gz.parquet /tmp/adamTestMvnb0spyFX/javaAC6980818398619624451/testRdd.coverage.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/javaAC6980818398619624451/testRdd.coverage.adam/part-r-00002.gz.parquet /tmp/adamTestMvnb0spyFX/javaAC6980818398619624451/testRdd.coverage.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/javaAC6980818398619624451/testRdd.coverage.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/javaAC6980818398619624451/testRdd.coverage.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/javaAC6980818398619624451/testRdd.coverage.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/javaAC6980818398619624451/testRdd.coverage.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/javaAC6980818398619624451/testRdd.coverage.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnb0spyFX/javaAC6980818398619624451/testRdd.coverage.adam/_metadata /tmp/adamTestMvnb0spyFX/javaAC6980818398619624451/testRdd.coverage.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnb0spyFX/javaAC6980818398619624451/testRdd.coverage.adam/_samples.avro /tmp/adamTestMvnb0spyFX/javaAC6980818398619624451/testRdd.coverage.adam/_common_metadata /tmp/adamTestMvnb0spyFX/javaAC6980818398619624451/testRdd.coverage.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/javaAC6980818398619624451/testRdd.coverage.adam/_references.avro /tmp/adamTestMvnb0spyFX/javaAC6980818398619624451/testRdd.coverage.adam/part-r-00003.gz.parquet /tmp/adamTestMvnb0spyFX/javaAC6980818398619624451/testRdd.coverage.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite6195967906134213227 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite9163194737924616518.narrowPeak /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite9163194737924616518.narrowPeak/.part-00001.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite9163194737924616518.narrowPeak/.part-00003.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite9163194737924616518.narrowPeak/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite9163194737924616518.narrowPeak/part-00003 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite9163194737924616518.narrowPeak/.part-00000.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite9163194737924616518.narrowPeak/part-00000 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite9163194737924616518.narrowPeak/part-00002 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite9163194737924616518.narrowPeak/_SUCCESS /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite9163194737924616518.narrowPeak/part-00001 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite9163194737924616518.narrowPeak/.part-00002.crc /tmp/adamTestMvnb0spyFX/6529104280246095445 /tmp/adamTestMvnb0spyFX/6529104280246095445/.ordered.sam.crc /tmp/adamTestMvnb0spyFX/6529104280246095445/ordered.sam /tmp/adamTestMvnb0spyFX/TempSuite8089786077204620879.adam /tmp/adamTestMvnb0spyFX/TempSuite8089786077204620879.adam/referenceName=2 /tmp/adamTestMvnb0spyFX/TempSuite8089786077204620879.adam/referenceName=2/positionBin=189 /tmp/adamTestMvnb0spyFX/TempSuite8089786077204620879.adam/referenceName=2/positionBin=189/.part-00000-79a36a9e-1b6c-4d32-a669-2f2b2c6248bd.c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite8089786077204620879.adam/referenceName=2/positionBin=189/part-00000-79a36a9e-1b6c-4d32-a669-2f2b2c6248bd.c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite8089786077204620879.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite8089786077204620879.adam/._partitionedByStartPos.crc /tmp/adamTestMvnb0spyFX/TempSuite8089786077204620879.adam/._processingSteps.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite8089786077204620879.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite8089786077204620879.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite8089786077204620879.adam/._readGroups.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite8089786077204620879.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite8089786077204620879.adam/_processingSteps.avro /tmp/adamTestMvnb0spyFX/TempSuite8089786077204620879.adam/referenceName=1 /tmp/adamTestMvnb0spyFX/TempSuite8089786077204620879.adam/referenceName=1/positionBin=26 /tmp/adamTestMvnb0spyFX/TempSuite8089786077204620879.adam/referenceName=1/positionBin=26/.part-00000-79a36a9e-1b6c-4d32-a669-2f2b2c6248bd.c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite8089786077204620879.adam/referenceName=1/positionBin=26/part-00000-79a36a9e-1b6c-4d32-a669-2f2b2c6248bd.c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite8089786077204620879.adam/referenceName=1/positionBin=240 /tmp/adamTestMvnb0spyFX/TempSuite8089786077204620879.adam/referenceName=1/positionBin=240/.part-00000-79a36a9e-1b6c-4d32-a669-2f2b2c6248bd.c000.snappy.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite8089786077204620879.adam/referenceName=1/positionBin=240/part-00000-79a36a9e-1b6c-4d32-a669-2f2b2c6248bd.c000.snappy.parquet /tmp/adamTestMvnb0spyFX/TempSuite8089786077204620879.adam/_readGroups.avro /tmp/adamTestMvnb0spyFX/TempSuite8089786077204620879.adam/_partitionedByStartPos /tmp/adamTestMvnb0spyFX/TempSuite7923028727365244597 /tmp/adamTestMvnb0spyFX/TempSuite2801337272588941767 /tmp/adamTestMvnb0spyFX/8552254081931576355 /tmp/adamTestMvnb0spyFX/8552254081931576355/sorted.lex.vcf /tmp/adamTestMvnb0spyFX/8552254081931576355/.sorted.lex.vcf.crc /tmp/adamTestMvnb0spyFX/TempSuite8683935210559946643.fq /tmp/adamTestMvnb0spyFX/TempSuite8683935210559946643 /tmp/adamTestMvnb0spyFX/TempSuite7706341588082120499.adam /tmp/adamTestMvnb0spyFX/TempSuite7706341588082120499.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/TempSuite7706341588082120499.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite7706341588082120499.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/TempSuite7706341588082120499.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite7706341588082120499.adam/._header.crc /tmp/adamTestMvnb0spyFX/TempSuite7706341588082120499.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite7706341588082120499.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite7706341588082120499.adam/_metadata /tmp/adamTestMvnb0spyFX/TempSuite7706341588082120499.adam/_samples.avro /tmp/adamTestMvnb0spyFX/TempSuite7706341588082120499.adam/_common_metadata /tmp/adamTestMvnb0spyFX/TempSuite7706341588082120499.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/TempSuite7706341588082120499.adam/_references.avro /tmp/adamTestMvnb0spyFX/TempSuite7706341588082120499.adam/_header /tmp/adamTestMvnb0spyFX/TempSuite7706341588082120499.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite6598292300434989908.fq /tmp/adamTestMvnb0spyFX/TempSuite6598292300434989908.fq/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite6598292300434989908.fq/.part-00000.crc /tmp/adamTestMvnb0spyFX/TempSuite6598292300434989908.fq/part-00000 /tmp/adamTestMvnb0spyFX/TempSuite6598292300434989908.fq/_SUCCESS /tmp/adamTestMvnb0spyFX/javaAC1308477190945566335 /tmp/adamTestMvnb0spyFX/javaAC1308477190945566335/testRdd.slices.adam /tmp/adamTestMvnb0spyFX/javaAC1308477190945566335/testRdd.slices.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/javaAC1308477190945566335/testRdd.slices.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/javaAC1308477190945566335/testRdd.slices.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/javaAC1308477190945566335/testRdd.slices.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/javaAC1308477190945566335/testRdd.slices.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/javaAC1308477190945566335/testRdd.slices.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/javaAC1308477190945566335/testRdd.slices.adam/_metadata /tmp/adamTestMvnb0spyFX/javaAC1308477190945566335/testRdd.slices.adam/_common_metadata /tmp/adamTestMvnb0spyFX/javaAC1308477190945566335/testRdd.slices.adam/_references.avro /tmp/adamTestMvnb0spyFX/javaAC1308477190945566335/testRdd.slices.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/SequenceDatasetSuite5522462018435503431 /tmp/adamTestMvnb0spyFX/TempSuite4379289820027023390 /tmp/adamTestMvnb0spyFX/TempSuite4369837683374781639 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite368976083470974182.interval_list /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite368976083470974182.interval_list/.part-00001.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite368976083470974182.interval_list/.part-00003.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite368976083470974182.interval_list/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite368976083470974182.interval_list/part-00003 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite368976083470974182.interval_list/.part-00000.crc /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite368976083470974182.interval_list/part-00000 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite368976083470974182.interval_list/part-00002 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite368976083470974182.interval_list/_SUCCESS /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite368976083470974182.interval_list/part-00001 /tmp/adamTestMvnb0spyFX/FeatureDatasetFunctionsSuite368976083470974182.interval_list/.part-00002.crc /tmp/adamTestMvnb0spyFX/TempSuite6060489827063887187 /tmp/adamTestMvnb0spyFX/7261801388458204497 /tmp/adamTestMvnb0spyFX/7261801388458204497/unordered.sam /tmp/adamTestMvnb0spyFX/7261801388458204497/.unordered.sam.crc /tmp/adamTestMvnb0spyFX/7717721547147395872 /tmp/adamTestMvnb0spyFX/7717721547147395872/genotypes.nested-annotations.adam /tmp/adamTestMvnb0spyFX/7717721547147395872/genotypes.nested-annotations.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/7717721547147395872/genotypes.nested-annotations.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/7717721547147395872/genotypes.nested-annotations.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/7717721547147395872/genotypes.nested-annotations.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/7717721547147395872/genotypes.nested-annotations.adam/._header.crc /tmp/adamTestMvnb0spyFX/7717721547147395872/genotypes.nested-annotations.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/7717721547147395872/genotypes.nested-annotations.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/7717721547147395872/genotypes.nested-annotations.adam/_metadata /tmp/adamTestMvnb0spyFX/7717721547147395872/genotypes.nested-annotations.adam/_samples.avro /tmp/adamTestMvnb0spyFX/7717721547147395872/genotypes.nested-annotations.adam/_common_metadata /tmp/adamTestMvnb0spyFX/7717721547147395872/genotypes.nested-annotations.adam/._samples.avro.crc /tmp/adamTestMvnb0spyFX/7717721547147395872/genotypes.nested-annotations.adam/_references.avro /tmp/adamTestMvnb0spyFX/7717721547147395872/genotypes.nested-annotations.adam/_header /tmp/adamTestMvnb0spyFX/7717721547147395872/genotypes.nested-annotations.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite2805036308592261235_2.fq /tmp/adamTestMvnb0spyFX/TempSuite2805036308592261235_2.fq/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/TempSuite2805036308592261235_2.fq/.part-00000.crc /tmp/adamTestMvnb0spyFX/TempSuite2805036308592261235_2.fq/part-00000 /tmp/adamTestMvnb0spyFX/TempSuite2805036308592261235_2.fq/_SUCCESS /tmp/adamTestMvnb0spyFX/TempSuite2808346497295567278 /tmp/adamTestMvnb0spyFX/artificial.cram7646347314636754670.cram /tmp/adamTestMvnb0spyFX/ReadDatasetSuite7323903841268443776.adam /tmp/adamTestMvnb0spyFX/ReadDatasetSuite7323903841268443776.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnb0spyFX/ReadDatasetSuite7323903841268443776.adam/part-r-00001.gz.parquet /tmp/adamTestMvnb0spyFX/ReadDatasetSuite7323903841268443776.adam/part-r-00000.gz.parquet /tmp/adamTestMvnb0spyFX/ReadDatasetSuite7323903841268443776.adam/part-r-00002.gz.parquet /tmp/adamTestMvnb0spyFX/ReadDatasetSuite7323903841268443776.adam/._SUCCESS.crc /tmp/adamTestMvnb0spyFX/ReadDatasetSuite7323903841268443776.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnb0spyFX/ReadDatasetSuite7323903841268443776.adam/._metadata.crc /tmp/adamTestMvnb0spyFX/ReadDatasetSuite7323903841268443776.adam/._references.avro.crc /tmp/adamTestMvnb0spyFX/ReadDatasetSuite7323903841268443776.adam/_SUCCESS /tmp/adamTestMvnb0spyFX/ReadDatasetSuite7323903841268443776.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnb0spyFX/ReadDatasetSuite7323903841268443776.adam/_metadata /tmp/adamTestMvnb0spyFX/ReadDatasetSuite7323903841268443776.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnb0spyFX/ReadDatasetSuite7323903841268443776.adam/_common_metadata /tmp/adamTestMvnb0spyFX/ReadDatasetSuite7323903841268443776.adam/_references.avro /tmp/adamTestMvnb0spyFX/ReadDatasetSuite7323903841268443776.adam/part-r-00003.gz.parquet /tmp/adamTestMvnb0spyFX/ReadDatasetSuite7323903841268443776.adam/._common_metadata.crc /tmp/adamTestMvnb0spyFX/TempSuite8059270578530962275 rm -rf ${ADAM_MVN_TMP_DIR} + rm -rf /tmp/adamTestMvnb0spyFX find . -name pom.xml \ -exec sed -i.bak \ -e "s:sun.io.serialization.extendedDebugInfo=true -Djava.io.tmpdir=${ADAM_MVN_TMP_DIR}:sun.io.serialization.extendedDebugInfo=true:g" \ {} \; + find . -name pom.xml -exec sed -i.bak -e 's:sun.io.serialization.extendedDebugInfo=true -Djava.io.tmpdir=/tmp/adamTestMvnb0spyFX:sun.io.serialization.extendedDebugInfo=true:g' '{}' ';' find . -name "*.bak" -exec rm -f {} \; + find . -name '*.bak' -exec rm -f '{}' ';' # run integration tests # make a temp directory ADAM_TMP_DIR=$(mktemp -d -t adamTestXXXXXXX) mktemp -d -t adamTestXXXXXXX ++ mktemp -d -t adamTestXXXXXXX + ADAM_TMP_DIR=/tmp/adamTestRGNk2cY # Just to be paranoid.. use a directory internal to the ADAM_TMP_DIR ADAM_TMP_DIR=$ADAM_TMP_DIR/deleteMePleaseThisIsNoLongerNeeded + ADAM_TMP_DIR=/tmp/adamTestRGNk2cY/deleteMePleaseThisIsNoLongerNeeded mkdir $ADAM_TMP_DIR + mkdir /tmp/adamTestRGNk2cY/deleteMePleaseThisIsNoLongerNeeded # set the TMPDIR envar, which is used by python to choose where to make temp directories export TMPDIR=${ADAM_TMP_DIR} + export TMPDIR=/tmp/adamTestRGNk2cY/deleteMePleaseThisIsNoLongerNeeded + TMPDIR=/tmp/adamTestRGNk2cY/deleteMePleaseThisIsNoLongerNeeded pushd $PROJECT_ROOT + pushd /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/scripts/.. ~/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu ~/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu # Copy the jar into our temp space for testing cp -r . $ADAM_TMP_DIR + cp -r . /tmp/adamTestRGNk2cY/deleteMePleaseThisIsNoLongerNeeded popd + popd ~/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu pushd $ADAM_TMP_DIR + pushd /tmp/adamTestRGNk2cY/deleteMePleaseThisIsNoLongerNeeded /tmp/adamTestRGNk2cY/deleteMePleaseThisIsNoLongerNeeded ~/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu # what hadoop version are we on? format string for downloading spark assembly if [[ $HADOOP_VERSION =~ ^2\.6 ]]; then HADOOP=hadoop2.6 elif [[ $HADOOP_VERSION =~ ^2\.7 ]]; then HADOOP=hadoop2.7 else echo "Unknown Hadoop version." exit 1 fi + [[ 2.7.5 =~ ^2\.6 ]] + [[ 2.7.5 =~ ^2\.7 ]] + HADOOP=hadoop2.7 # set spark artifact string for downloading assembly SPARK=spark-${SPARK_VERSION} + SPARK=spark-2.4.4 # download prepackaged spark assembly # Spark 2.4.3+ needs special case for Scala 2.12 if [ ${SCALAVER} == 2.12 ]; then curl \ -L "https://www.apache.org/dyn/mirrors/mirrors.cgi?action=download&filename=spark/${SPARK}/${SPARK}-bin-without-hadoop-scala-2.12.tgz" \ -o ${SPARK}-bin-without-hadoop-scala-2.12.tgz tar xzvf ${SPARK}-bin-without-hadoop-scala-2.12.tgz export SPARK_HOME=${ADAM_TMP_DIR}/${SPARK}-bin-without-hadoop-scala-2.12 curl \ -L "http://www-us.apache.org/dist/hadoop/common/hadoop-2.7.7/hadoop-2.7.7.tar.gz" \ -o hadoop-2.7.7.tar.gz tar xzvf hadoop-2.7.7.tar.gz # remove references to avro 1.7.x find hadoop-2.7.7 -name *.jar | grep avro | xargs rm # download avro 1.8.x curl \ -L "http://repo1.maven.org/maven2/org/apache/avro/avro/1.8.2/avro-1.8.2.jar" \ -o hadoop-2.7.7/share/hadoop/common/avro-1.8.2.jar export SPARK_DIST_CLASSPATH=$(hadoop-2.7.7/bin/hadoop classpath) else curl \ -L "https://www.apache.org/dyn/mirrors/mirrors.cgi?action=download&filename=spark/${SPARK}/${SPARK}-bin-${HADOOP}.tgz" \ -o ${SPARK}-bin-${HADOOP}.tgz tar xzvf ${SPARK}-bin-${HADOOP}.tgz export SPARK_HOME=${ADAM_TMP_DIR}/${SPARK}-bin-${HADOOP} fi + '[' 2.11 == 2.12 ']' + curl -L 'https://www.apache.org/dyn/mirrors/mirrors.cgi?action=download&filename=spark/spark-2.4.4/spark-2.4.4-bin-hadoop2.7.tgz' -o spark-2.4.4-bin-hadoop2.7.tgz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 219M 0 710k 0 0 371k 0 0:10:04 0:00:01 0:10:03 692k 0 219M 0 1873k 0 0 656k 0 0:05:42 0:00:02 0:05:40 950k 1 219M 1 3146k 0 0 810k 0 0:04:37 0:00:03 0:04:34 1049k 1 219M 1 4016k 0 0 827k 0 0:04:31 0:00:04 0:04:27 1011k 2 219M 2 4810k 0 0 813k 0 0:04:36 0:00:05 0:04:31 956k 2 219M 2 5427k 0 0 785k 0 0:04:46 0:00:06 0:04:40 943k 2 219M 2 6403k 0 0 812k 0 0:04:36 0:00:07 0:04:29 901k 3 219M 3 7520k 0 0 847k 0 0:04:25 0:00:08 0:04:17 875k 3 219M 3 8789k 0 0 889k 0 0:04:12 0:00:09 0:04:03 949k 4 219M 4 9.9M 0 0 934k 0 0:04:00 0:00:10 0:03:50 1078k 4 219M 4 10.4M 0 0 903k 0 0:04:08 0:00:11 0:03:57 1067k 5 219M 5 11.4M 0 0 907k 0 0:04:07 0:00:12 0:03:55 1058k 5 219M 5 12.5M 0 0 924k 0 0:04:03 0:00:13 0:03:50 1061k 6 219M 6 13.4M 0 0 928k 0 0:04:02 0:00:14 0:03:48 1005k 6 219M 6 14.5M 0 0 938k 0 0:03:59 0:00:15 0:03:44 947k 7 219M 7 15.6M 0 0 951k 0 0:03:56 0:00:16 0:03:40 1065k 7 219M 7 16.9M 0 0 971k 0 0:03:51 0:00:17 0:03:34 1135k 7 219M 7 17.5M 0 0 949k 0 0:03:56 0:00:18 0:03:38 1018k 8 219M 8 18.3M 0 0 943k 0 0:03:58 0:00:19 0:03:39 989k 8 219M 8 19.3M 0 0 947k 0 0:03:57 0:00:20 0:03:37 977k 9 219M 9 20.3M 0 0 954k 0 0:03:55 0:00:21 0:03:34 963k 9 219M 9 21.5M 0 0 964k 0 0:03:53 0:00:22 0:03:31 937k 10 219M 10 22.3M 0 0 957k 0 0:03:54 0:00:23 0:03:31 989k 10 219M 10 23.4M 0 0 966k 0 0:03:52 0:00:24 0:03:28 1059k 11 219M 11 24.7M 0 0 977k 0 0:03:49 0:00:25 0:03:24 1101k 11 219M 11 25.8M 0 0 986k 0 0:03:47 0:00:26 0:03:21 1127k 12 219M 12 27.2M 0 0 1001k 0 0:03:44 0:00:27 0:03:17 1173k 13 219M 13 28.7M 0 0 1017k 0 0:03:40 0:00:28 0:03:12 1297k 13 219M 13 29.4M 0 0 1011k 0 0:03:42 0:00:29 0:03:13 1230k 13 219M 13 30.3M 0 0 995k 0 0:03:45 0:00:31 0:03:14 1087k 13 219M 13 30.6M 0 0 983k 0 0:03:48 0:00:31 0:03:17 968k 14 219M 14 31.7M 0 0 987k 0 0:03:47 0:00:32 0:03:15 911k 15 219M 15 33.0M 0 0 997k 0 0:03:45 0:00:33 0:03:12 882k 15 219M 15 33.8M 0 0 995k 0 0:03:45 0:00:34 0:03:11 900k 15 219M 15 34.7M 0 0 993k 0 0:03:46 0:00:35 0:03:11 975k 16 219M 16 35.8M 0 0 996k 0 0:03:45 0:00:36 0:03:09 1078k 16 219M 16 37.0M 0 0 1000k 0 0:03:44 0:00:37 0:03:07 1086k 17 219M 17 38.2M 0 0 1007k 0 0:03:43 0:00:38 0:03:05 1074k 17 219M 17 39.0M 0 0 1001k 0 0:03:44 0:00:39 0:03:05 1045k 18 219M 18 39.7M 0 0 994k 0 0:03:45 0:00:40 0:03:05 1002k 18 219M 18 40.4M 0 0 989k 0 0:03:47 0:00:41 0:03:06 935k 18 219M 18 41.3M 0 0 987k 0 0:03:47 0:00:42 0:03:05 880k 19 219M 19 42.3M 0 0 987k 0 0:03:47 0:00:43 0:03:04 829k 19 219M 19 43.3M 0 0 989k 0 0:03:47 0:00:44 0:03:03 895k 20 219M 20 44.4M 0 0 991k 0 0:03:46 0:00:45 0:03:01 970k 20 219M 20 45.5M 0 0 995k 0 0:03:45 0:00:46 0:02:59 1045k 21 219M 21 46.8M 0 0 1001k 0 0:03:44 0:00:47 0:02:57 1128k 21 219M 21 48.1M 0 0 1008k 0 0:03:42 0:00:48 0:02:54 1192k 22 219M 22 49.5M 0 0 1016k 0 0:03:41 0:00:49 0:02:52 1252k 22 219M 22 50.2M 0 0 1011k 0 0:03:42 0:00:50 0:02:52 1194k 23 219M 23 51.1M 0 0 1010k 0 0:03:42 0:00:51 0:02:51 1150k 23 219M 23 52.1M 0 0 1009k 0 0:03:42 0:00:52 0:02:50 1082k 24 219M 24 53.2M 0 0 1012k 0 0:03:41 0:00:53 0:02:48 1052k 24 219M 24 54.1M 0 0 1011k 0 0:03:42 0:00:54 0:02:48 963k 25 219M 25 55.1M 0 0 1011k 0 0:03:42 0:00:55 0:02:47 1004k 25 219M 25 56.0M 0 0 1009k 0 0:03:42 0:00:56 0:02:46 999k 26 219M 26 57.0M 0 0 1009k 0 0:03:42 0:00:57 0:02:45 1009k 26 219M 26 58.2M 0 0 1012k 0 0:03:41 0:00:58 0:02:43 1019k 27 219M 27 59.5M 0 0 1017k 0 0:03:40 0:00:59 0:02:41 1085k 27 219M 27 60.8M 0 0 1024k 0 0:03:39 0:01:00 0:02:39 1174k 28 219M 28 61.9M 0 0 1025k 0 0:03:39 0:01:01 0:02:38 1214k 28 219M 28 62.8M 0 0 1023k 0 0:03:39 0:01:02 0:02:37 1189k 29 219M 29 63.8M 0 0 1023k 0 0:03:39 0:01:03 0:02:36 1142k 29 219M 29 64.9M 0 0 1025k 0 0:03:39 0:01:04 0:02:35 1122k 30 219M 30 66.2M 0 0 1029k 0 0:03:38 0:01:05 0:02:33 1088k 30 219M 30 67.4M 0 0 1033k 0 0:03:37 0:01:06 0:02:31 1129k 31 219M 31 68.4M 0 0 1031k 0 0:03:37 0:01:07 0:02:30 1133k 31 219M 31 69.2M 0 0 1029k 0 0:03:38 0:01:08 0:02:30 1106k 32 219M 32 70.2M 0 0 1029k 0 0:03:38 0:01:09 0:02:29 1082k 32 219M 32 71.4M 0 0 1032k 0 0:03:37 0:01:10 0:02:27 1074k 33 219M 33 72.6M 0 0 1034k 0 0:03:37 0:01:11 0:02:26 1051k 33 219M 33 73.9M 0 0 1040k 0 0:03:36 0:01:12 0:02:24 1152k 34 219M 34 75.2M 0 0 1043k 0 0:03:35 0:01:13 0:02:22 1238k 34 219M 34 76.4M 0 0 1044k 0 0:03:35 0:01:14 0:02:21 1249k 35 219M 35 77.8M 0 0 1045k 0 0:03:34 0:01:16 0:02:18 1223k 35 219M 35 78.0M 0 0 1040k 0 0:03:35 0:01:16 0:02:19 1123k 35 219M 35 78.8M 0 0 1037k 0 0:03:36 0:01:17 0:02:19 994k 36 219M 36 79.6M 0 0 1034k 0 0:03:37 0:01:18 0:02:19 907k 36 219M 36 80.6M 0 0 1033k 0 0:03:37 0:01:19 0:02:18 875k 37 219M 37 81.7M 0 0 1035k 0 0:03:36 0:01:20 0:02:16 865k 37 219M 37 83.0M 0 0 1038k 0 0:03:36 0:01:21 0:02:15 1012k 38 219M 38 84.4M 0 0 1043k 0 0:03:35 0:01:22 0:02:13 1151k 39 219M 39 85.9M 0 0 1049k 0 0:03:34 0:01:23 0:02:11 1280k 39 219M 39 86.2M 0 0 1040k 0 0:03:35 0:01:24 0:02:11 1148k 39 219M 39 87.2M 0 0 1041k 0 0:03:35 0:01:25 0:02:10 1131k 40 219M 40 88.1M 0 0 1038k 0 0:03:36 0:01:26 0:02:10 1032k 40 219M 40 88.6M 0 0 1033k 0 0:03:37 0:01:27 0:02:10 856k 40 219M 40 89.5M 0 0 1031k 0 0:03:37 0:01:28 0:02:09 727k 41 219M 41 90.6M 0 0 1033k 0 0:03:37 0:01:29 0:02:08 902k 41 219M 41 91.8M 0 0 1035k 0 0:03:36 0:01:30 0:02:06 943k 42 219M 42 93.2M 0 0 1038k 0 0:03:36 0:01:31 0:02:05 1046k 43 219M 43 94.6M 0 0 1043k 0 0:03:35 0:01:32 0:02:03 1222k 43 219M 43 95.5M 0 0 1042k 0 0:03:35 0:01:33 0:02:02 1230k 43 219M 43 96.4M 0 0 1040k 0 0:03:35 0:01:34 0:02:01 1178k 44 219M 44 97.4M 0 0 1041k 0 0:03:35 0:01:35 0:02:00 1146k 44 219M 44 98.5M 0 0 1042k 0 0:03:35 0:01:36 0:01:59 1099k 45 219M 45 99.5M 0 0 1041k 0 0:03:35 0:01:37 0:01:58 1002k 45 219M 45 100M 0 0 1042k 0 0:03:35 0:01:38 0:01:57 1044k 46 219M 46 101M 0 0 1044k 0 0:03:35 0:01:39 0:01:56 1116k 46 219M 46 102M 0 0 1043k 0 0:03:35 0:01:40 0:01:55 1081k 47 219M 47 103M 0 0 1044k 0 0:03:35 0:01:41 0:01:54 1091k 47 219M 47 105M 0 0 1046k 0 0:03:34 0:01:42 0:01:52 1150k 48 219M 48 106M 0 0 1049k 0 0:03:34 0:01:43 0:01:51 1184k 48 219M 48 107M 0 0 1044k 0 0:03:35 0:01:45 0:01:50 1046k 49 219M 49 107M 0 0 1042k 0 0:03:35 0:01:45 0:01:50 1027k 49 219M 49 108M 0 0 1040k 0 0:03:36 0:01:47 0:01:49 954k 49 219M 49 109M 0 0 1036k 0 0:03:36 0:01:47 0:01:49 835k 50 219M 50 110M 0 0 1036k 0 0:03:36 0:01:48 0:01:48 772k 50 219M 50 111M 0 0 1037k 0 0:03:36 0:01:49 0:01:47 888k 51 219M 51 112M 0 0 1039k 0 0:03:36 0:01:50 0:01:46 962k 51 219M 51 113M 0 0 1041k 0 0:03:35 0:01:51 0:01:44 1073k 52 219M 52 115M 0 0 1044k 0 0:03:35 0:01:52 0:01:43 1205k 52 219M 52 116M 0 0 1043k 0 0:03:35 0:01:53 0:01:42 1200k 53 219M 53 116M 0 0 1041k 0 0:03:35 0:01:54 0:01:41 1134k 53 219M 53 117M 0 0 1040k 0 0:03:35 0:01:55 0:01:40 1071k 54 219M 54 118M 0 0 1039k 0 0:03:36 0:01:56 0:01:40 995k 54 219M 54 119M 0 0 1039k 0 0:03:36 0:01:57 0:01:39 938k 55 219M 55 120M 0 0 1041k 0 0:03:35 0:01:58 0:01:37 985k 55 219M 55 122M 0 0 1043k 0 0:03:35 0:01:59 0:01:36 1085k 56 219M 56 123M 0 0 1047k 0 0:03:34 0:02:00 0:01:34 1200k 56 219M 56 124M 0 0 1046k 0 0:03:34 0:02:01 0:01:33 1210k 57 219M 57 125M 0 0 1046k 0 0:03:34 0:02:02 0:01:32 1214k 57 219M 57 126M 0 0 1046k 0 0:03:34 0:02:03 0:01:31 1168k 58 219M 58 127M 0 0 1045k 0 0:03:34 0:02:04 0:01:30 1096k 58 219M 58 128M 0 0 1047k 0 0:03:34 0:02:05 0:01:29 1058k 59 219M 59 130M 0 0 1049k 0 0:03:34 0:02:06 0:01:28 1114k 59 219M 59 131M 0 0 1052k 0 0:03:33 0:02:07 0:01:26 1181k 60 219M 60 132M 0 0 1050k 0 0:03:33 0:02:08 0:01:25 1167k 60 219M 60 133M 0 0 1050k 0 0:03:33 0:02:09 0:01:24 1154k 61 219M 61 134M 0 0 1050k 0 0:03:33 0:02:10 0:01:23 1123k 61 219M 61 135M 0 0 1051k 0 0:03:33 0:02:11 0:01:22 1118k 62 219M 62 136M 0 0 1054k 0 0:03:33 0:02:12 0:01:21 1119k 62 219M 62 138M 0 0 1057k 0 0:03:32 0:02:13 0:01:19 1217k 63 219M 63 139M 0 0 1056k 0 0:03:32 0:02:14 0:01:18 1214k 63 219M 63 140M 0 0 1055k 0 0:03:32 0:02:15 0:01:17 1186k 64 219M 64 141M 0 0 1055k 0 0:03:32 0:02:16 0:01:16 1155k 64 219M 64 142M 0 0 1057k 0 0:03:32 0:02:17 0:01:15 1138k 65 219M 65 143M 0 0 1060k 0 0:03:31 0:02:18 0:01:13 1148k 66 219M 66 145M 0 0 1062k 0 0:03:31 0:02:19 0:01:12 1236k 66 219M 66 146M 0 0 1061k 0 0:03:31 0:02:20 0:01:11 1240k 66 219M 66 146M 0 0 1060k 0 0:03:31 0:02:21 0:01:10 1203k 67 219M 67 147M 0 0 1060k 0 0:03:31 0:02:22 0:01:09 1124k 67 219M 67 148M 0 0 1059k 0 0:03:32 0:02:23 0:01:09 1041k 68 219M 68 149M 0 0 1059k 0 0:03:31 0:02:24 0:01:07 980k 68 219M 68 151M 0 0 1061k 0 0:03:31 0:02:25 0:01:06 1044k 69 219M 69 152M 0 0 1062k 0 0:03:31 0:02:26 0:01:05 1116k 70 219M 70 153M 0 0 1065k 0 0:03:30 0:02:27 0:01:03 1218k 70 219M 70 154M 0 0 1063k 0 0:03:31 0:02:28 0:01:03 1174k 70 219M 70 155M 0 0 1062k 0 0:03:31 0:02:29 0:01:02 1138k 71 219M 71 156M 0 0 1062k 0 0:03:31 0:02:30 0:01:01 1094k 71 219M 71 157M 0 0 1062k 0 0:03:31 0:02:31 0:01:00 1067k 72 219M 72 158M 0 0 1064k 0 0:03:31 0:02:32 0:00:59 1035k 73 219M 73 160M 0 0 1066k 0 0:03:30 0:02:33 0:00:57 1158k 73 219M 73 161M 0 0 1066k 0 0:03:30 0:02:34 0:00:56 1188k 74 219M 74 162M 0 0 1068k 0 0:03:30 0:02:35 0:00:55 1247k 74 219M 74 163M 0 0 1069k 0 0:03:30 0:02:36 0:00:54 1258k 75 219M 75 164M 0 0 1069k 0 0:03:30 0:02:37 0:00:53 1230k 75 219M 75 166M 0 0 1070k 0 0:03:29 0:02:38 0:00:51 1199k 76 219M 76 167M 0 0 1072k 0 0:03:29 0:02:39 0:00:50 1259k 76 219M 76 168M 0 0 1073k 0 0:03:29 0:02:40 0:00:49 1217k 77 219M 77 169M 0 0 1074k 0 0:03:29 0:02:41 0:00:48 1238k 78 219M 78 171M 0 0 1076k 0 0:03:28 0:02:42 0:00:46 1297k 78 219M 78 172M 0 0 1079k 0 0:03:28 0:02:43 0:00:45 1343k 79 219M 79 173M 0 0 1080k 0 0:03:28 0:02:44 0:00:44 1316k 79 219M 79 175M 0 0 1081k 0 0:03:27 0:02:45 0:00:42 1349k 80 219M 80 176M 0 0 1082k 0 0:03:27 0:02:46 0:00:41 1329k 80 219M 80 177M 0 0 1080k 0 0:03:27 0:02:47 0:00:40 1207k 81 219M 81 178M 0 0 1079k 0 0:03:28 0:02:48 0:00:40 1097k 81 219M 81 179M 0 0 1079k 0 0:03:28 0:02:49 0:00:39 1072k 82 219M 82 180M 0 0 1080k 0 0:03:27 0:02:50 0:00:37 1050k 82 219M 82 181M 0 0 1080k 0 0:03:27 0:02:51 0:00:36 1043k 83 219M 83 182M 0 0 1080k 0 0:03:27 0:02:52 0:00:35 1094k 83 219M 83 183M 0 0 1082k 0 0:03:27 0:02:53 0:00:34 1162k 84 219M 84 185M 0 0 1083k 0 0:03:27 0:02:54 0:00:33 1219k 84 219M 84 186M 0 0 1085k 0 0:03:27 0:02:55 0:00:32 1239k 85 219M 85 187M 0 0 1083k 0 0:03:27 0:02:56 0:00:31 1172k 85 219M 85 188M 0 0 1082k 0 0:03:27 0:02:57 0:00:30 1136k 86 219M 86 189M 0 0 1082k 0 0:03:27 0:02:58 0:00:29 1088k 86 219M 86 190M 0 0 1082k 0 0:03:27 0:02:59 0:00:28 1052k 87 219M 87 191M 0 0 1084k 0 0:03:27 0:03:00 0:00:27 1057k 87 219M 87 192M 0 0 1084k 0 0:03:27 0:03:01 0:00:26 1129k 88 219M 88 193M 0 0 1085k 0 0:03:26 0:03:02 0:00:24 1202k 88 219M 88 195M 0 0 1086k 0 0:03:26 0:03:03 0:00:23 1251k 89 219M 89 196M 0 0 1089k 0 0:03:26 0:03:04 0:00:22 1310k 90 219M 90 197M 0 0 1089k 0 0:03:26 0:03:05 0:00:21 1267k 90 219M 90 199M 0 0 1090k 0 0:03:26 0:03:06 0:00:20 1304k 91 219M 91 200M 0 0 1090k 0 0:03:25 0:03:07 0:00:18 1272k 91 219M 91 201M 0 0 1091k 0 0:03:25 0:03:08 0:00:17 1263k 92 219M 92 202M 0 0 1090k 0 0:03:26 0:03:10 0:00:16 1149k 92 219M 92 202M 0 0 1087k 0 0:03:26 0:03:10 0:00:16 1040k 92 219M 92 203M 0 0 1084k 0 0:03:27 0:03:11 0:00:16 850k 92 219M 92 203M 0 0 1082k 0 0:03:27 0:03:12 0:00:15 765k 93 219M 93 204M 0 0 1080k 0 0:03:27 0:03:13 0:00:14 669k 93 219M 93 205M 0 0 1080k 0 0:03:28 0:03:14 0:00:14 656k 94 219M 94 206M 0 0 1079k 0 0:03:28 0:03:15 0:00:13 769k 94 219M 94 207M 0 0 1080k 0 0:03:27 0:03:16 0:00:11 939k 95 219M 95 209M 0 0 1081k 0 0:03:27 0:03:17 0:00:10 1056k 95 219M 95 209M 0 0 1080k 0 0:03:27 0:03:18 0:00:09 1061k 95 219M 95 210M 0 0 1078k 0 0:03:28 0:03:19 0:00:09 1012k 96 219M 96 211M 0 0 1078k 0 0:03:28 0:03:20 0:00:08 1021k 96 219M 96 212M 0 0 1077k 0 0:03:28 0:03:21 0:00:07 951k 97 219M 97 213M 0 0 1077k 0 0:03:28 0:03:22 0:00:06 896k 97 219M 97 214M 0 0 1077k 0 0:03:28 0:03:23 0:00:05 974k 98 219M 98 215M 0 0 1078k 0 0:03:28 0:03:24 0:00:04 1084k 98 219M 98 217M 0 0 1079k 0 0:03:28 0:03:25 0:00:03 1141k 99 219M 99 217M 0 0 1077k 0 0:03:28 0:03:26 0:00:02 1088k 99 219M 99 218M 0 0 1076k 0 0:03:28 0:03:27 0:00:01 1047k 100 219M 100 219M 0 0 1076k 0 0:03:28 0:03:28 --:--:-- 1028k + tar xzvf spark-2.4.4-bin-hadoop2.7.tgz spark-2.4.4-bin-hadoop2.7/ spark-2.4.4-bin-hadoop2.7/R/ spark-2.4.4-bin-hadoop2.7/R/lib/ spark-2.4.4-bin-hadoop2.7/R/lib/sparkr.zip spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/ spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/INDEX spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/html/ spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/html/R.css spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/html/00Index.html spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/help/ spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/help/aliases.rds spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/help/AnIndex spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/help/SparkR.rdx spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/help/SparkR.rdb spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/help/paths.rds spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/worker/ spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/worker/worker.R spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/worker/daemon.R spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/tests/ spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/tests/testthat/ spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/tests/testthat/test_basic.R spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/profile/ spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/profile/shell.R spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/profile/general.R spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/R/ spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/R/SparkR.rdx spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/R/SparkR.rdb spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/R/SparkR spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/Meta/ spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/Meta/nsInfo.rds spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/Meta/links.rds spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/Meta/hsearch.rds spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/Meta/Rd.rds spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/Meta/features.rds spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/Meta/package.rds spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/DESCRIPTION spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/NAMESPACE spark-2.4.4-bin-hadoop2.7/sbin/ spark-2.4.4-bin-hadoop2.7/sbin/stop-shuffle-service.sh spark-2.4.4-bin-hadoop2.7/sbin/start-thriftserver.sh spark-2.4.4-bin-hadoop2.7/sbin/start-slave.sh spark-2.4.4-bin-hadoop2.7/sbin/start-shuffle-service.sh spark-2.4.4-bin-hadoop2.7/sbin/start-mesos-shuffle-service.sh spark-2.4.4-bin-hadoop2.7/sbin/start-master.sh spark-2.4.4-bin-hadoop2.7/sbin/start-history-server.sh spark-2.4.4-bin-hadoop2.7/sbin/spark-config.sh spark-2.4.4-bin-hadoop2.7/sbin/stop-thriftserver.sh spark-2.4.4-bin-hadoop2.7/sbin/stop-slaves.sh spark-2.4.4-bin-hadoop2.7/sbin/stop-slave.sh spark-2.4.4-bin-hadoop2.7/sbin/stop-mesos-shuffle-service.sh spark-2.4.4-bin-hadoop2.7/sbin/stop-mesos-dispatcher.sh spark-2.4.4-bin-hadoop2.7/sbin/stop-master.sh spark-2.4.4-bin-hadoop2.7/sbin/stop-history-server.sh spark-2.4.4-bin-hadoop2.7/sbin/stop-all.sh spark-2.4.4-bin-hadoop2.7/sbin/start-slaves.sh spark-2.4.4-bin-hadoop2.7/sbin/start-mesos-dispatcher.sh spark-2.4.4-bin-hadoop2.7/sbin/start-all.sh spark-2.4.4-bin-hadoop2.7/sbin/spark-daemons.sh spark-2.4.4-bin-hadoop2.7/sbin/spark-daemon.sh spark-2.4.4-bin-hadoop2.7/sbin/slaves.sh spark-2.4.4-bin-hadoop2.7/python/ spark-2.4.4-bin-hadoop2.7/python/dist/ spark-2.4.4-bin-hadoop2.7/python/pyspark.egg-info/ spark-2.4.4-bin-hadoop2.7/python/pyspark.egg-info/SOURCES.txt spark-2.4.4-bin-hadoop2.7/python/pyspark.egg-info/dependency_links.txt spark-2.4.4-bin-hadoop2.7/python/pyspark.egg-info/top_level.txt spark-2.4.4-bin-hadoop2.7/python/pyspark.egg-info/PKG-INFO spark-2.4.4-bin-hadoop2.7/python/pyspark.egg-info/requires.txt spark-2.4.4-bin-hadoop2.7/python/README.md spark-2.4.4-bin-hadoop2.7/python/MANIFEST.in spark-2.4.4-bin-hadoop2.7/python/setup.py spark-2.4.4-bin-hadoop2.7/python/run-tests.py spark-2.4.4-bin-hadoop2.7/python/run-tests-with-coverage spark-2.4.4-bin-hadoop2.7/python/test_support/ spark-2.4.4-bin-hadoop2.7/python/test_support/userlibrary.py spark-2.4.4-bin-hadoop2.7/python/test_support/userlib-0.1.zip spark-2.4.4-bin-hadoop2.7/python/test_support/sql/ spark-2.4.4-bin-hadoop2.7/python/test_support/sql/text-test.txt spark-2.4.4-bin-hadoop2.7/python/test_support/sql/streaming/ spark-2.4.4-bin-hadoop2.7/python/test_support/sql/streaming/text-test.txt spark-2.4.4-bin-hadoop2.7/python/test_support/sql/people_array_utf16le.json spark-2.4.4-bin-hadoop2.7/python/test_support/sql/people_array.json spark-2.4.4-bin-hadoop2.7/python/test_support/sql/people1.json spark-2.4.4-bin-hadoop2.7/python/test_support/sql/people.json spark-2.4.4-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/ spark-2.4.4-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2015/ spark-2.4.4-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2015/month=9/ spark-2.4.4-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2015/month=9/day=1/ spark-2.4.4-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2015/month=9/day=1/part-r-00007.gz.parquet spark-2.4.4-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2015/month=9/day=1/.part-r-00007.gz.parquet.crc spark-2.4.4-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2015/month=10/ spark-2.4.4-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2015/month=10/day=26/ spark-2.4.4-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2015/month=10/day=26/part-r-00005.gz.parquet spark-2.4.4-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2015/month=10/day=26/.part-r-00005.gz.parquet.crc spark-2.4.4-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2015/month=10/day=25/ spark-2.4.4-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2015/month=10/day=25/part-r-00004.gz.parquet spark-2.4.4-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2015/month=10/day=25/part-r-00002.gz.parquet spark-2.4.4-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2015/month=10/day=25/.part-r-00004.gz.parquet.crc spark-2.4.4-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2015/month=10/day=25/.part-r-00002.gz.parquet.crc spark-2.4.4-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2014/ spark-2.4.4-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2014/month=9/ spark-2.4.4-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2014/month=9/day=1/ spark-2.4.4-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2014/month=9/day=1/part-r-00008.gz.parquet spark-2.4.4-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2014/month=9/day=1/.part-r-00008.gz.parquet.crc spark-2.4.4-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/_metadata spark-2.4.4-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/_common_metadata spark-2.4.4-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/_SUCCESS spark-2.4.4-bin-hadoop2.7/python/test_support/sql/orc_partitioned/ spark-2.4.4-bin-hadoop2.7/python/test_support/sql/orc_partitioned/b=1/ spark-2.4.4-bin-hadoop2.7/python/test_support/sql/orc_partitioned/b=1/c=1/ spark-2.4.4-bin-hadoop2.7/python/test_support/sql/orc_partitioned/b=1/c=1/part-r-00000-829af031-b970-49d6-ad39-30460a0be2c8.orc spark-2.4.4-bin-hadoop2.7/python/test_support/sql/orc_partitioned/b=1/c=1/.part-r-00000-829af031-b970-49d6-ad39-30460a0be2c8.orc.crc spark-2.4.4-bin-hadoop2.7/python/test_support/sql/orc_partitioned/b=0/ spark-2.4.4-bin-hadoop2.7/python/test_support/sql/orc_partitioned/b=0/c=0/ spark-2.4.4-bin-hadoop2.7/python/test_support/sql/orc_partitioned/b=0/c=0/part-r-00000-829af031-b970-49d6-ad39-30460a0be2c8.orc spark-2.4.4-bin-hadoop2.7/python/test_support/sql/orc_partitioned/b=0/c=0/.part-r-00000-829af031-b970-49d6-ad39-30460a0be2c8.orc.crc spark-2.4.4-bin-hadoop2.7/python/test_support/sql/orc_partitioned/_SUCCESS spark-2.4.4-bin-hadoop2.7/python/test_support/sql/ages_newlines.csv spark-2.4.4-bin-hadoop2.7/python/test_support/sql/ages.csv spark-2.4.4-bin-hadoop2.7/python/test_support/hello/ spark-2.4.4-bin-hadoop2.7/python/test_support/hello/sub_hello/ spark-2.4.4-bin-hadoop2.7/python/test_support/hello/sub_hello/sub_hello.txt spark-2.4.4-bin-hadoop2.7/python/test_support/hello/hello.txt spark-2.4.4-bin-hadoop2.7/python/test_support/SimpleHTTPServer.py spark-2.4.4-bin-hadoop2.7/python/test_coverage/ spark-2.4.4-bin-hadoop2.7/python/test_coverage/sitecustomize.py spark-2.4.4-bin-hadoop2.7/python/test_coverage/coverage_daemon.py spark-2.4.4-bin-hadoop2.7/python/test_coverage/conf/ spark-2.4.4-bin-hadoop2.7/python/test_coverage/conf/spark-defaults.conf spark-2.4.4-bin-hadoop2.7/python/setup.cfg spark-2.4.4-bin-hadoop2.7/python/run-tests spark-2.4.4-bin-hadoop2.7/python/pyspark/ spark-2.4.4-bin-hadoop2.7/python/pyspark/python/ spark-2.4.4-bin-hadoop2.7/python/pyspark/python/pyspark/ spark-2.4.4-bin-hadoop2.7/python/pyspark/python/pyspark/shell.py spark-2.4.4-bin-hadoop2.7/python/pyspark/shuffle.py spark-2.4.4-bin-hadoop2.7/python/pyspark/serializers.py spark-2.4.4-bin-hadoop2.7/python/pyspark/rdd.py spark-2.4.4-bin-hadoop2.7/python/pyspark/profiler.py spark-2.4.4-bin-hadoop2.7/python/pyspark/java_gateway.py spark-2.4.4-bin-hadoop2.7/python/pyspark/files.py spark-2.4.4-bin-hadoop2.7/python/pyspark/daemon.py spark-2.4.4-bin-hadoop2.7/python/pyspark/context.py spark-2.4.4-bin-hadoop2.7/python/pyspark/conf.py spark-2.4.4-bin-hadoop2.7/python/pyspark/cloudpickle.py spark-2.4.4-bin-hadoop2.7/python/pyspark/broadcast.py spark-2.4.4-bin-hadoop2.7/python/pyspark/accumulators.py spark-2.4.4-bin-hadoop2.7/python/pyspark/__init__.py spark-2.4.4-bin-hadoop2.7/python/pyspark/worker.py spark-2.4.4-bin-hadoop2.7/python/pyspark/version.py spark-2.4.4-bin-hadoop2.7/python/pyspark/util.py spark-2.4.4-bin-hadoop2.7/python/pyspark/tests.py spark-2.4.4-bin-hadoop2.7/python/pyspark/test_serializers.py spark-2.4.4-bin-hadoop2.7/python/pyspark/test_broadcast.py spark-2.4.4-bin-hadoop2.7/python/pyspark/taskcontext.py spark-2.4.4-bin-hadoop2.7/python/pyspark/storagelevel.py spark-2.4.4-bin-hadoop2.7/python/pyspark/traceback_utils.py spark-2.4.4-bin-hadoop2.7/python/pyspark/streaming/ spark-2.4.4-bin-hadoop2.7/python/pyspark/streaming/tests.py spark-2.4.4-bin-hadoop2.7/python/pyspark/streaming/kinesis.py spark-2.4.4-bin-hadoop2.7/python/pyspark/streaming/kafka.py spark-2.4.4-bin-hadoop2.7/python/pyspark/streaming/flume.py spark-2.4.4-bin-hadoop2.7/python/pyspark/streaming/dstream.py spark-2.4.4-bin-hadoop2.7/python/pyspark/streaming/context.py spark-2.4.4-bin-hadoop2.7/python/pyspark/streaming/util.py spark-2.4.4-bin-hadoop2.7/python/pyspark/streaming/listener.py spark-2.4.4-bin-hadoop2.7/python/pyspark/streaming/__init__.py spark-2.4.4-bin-hadoop2.7/python/pyspark/status.py spark-2.4.4-bin-hadoop2.7/python/pyspark/statcounter.py spark-2.4.4-bin-hadoop2.7/python/pyspark/sql/ spark-2.4.4-bin-hadoop2.7/python/pyspark/sql/tests.py spark-2.4.4-bin-hadoop2.7/python/pyspark/sql/streaming.py spark-2.4.4-bin-hadoop2.7/python/pyspark/sql/session.py spark-2.4.4-bin-hadoop2.7/python/pyspark/sql/readwriter.py spark-2.4.4-bin-hadoop2.7/python/pyspark/sql/functions.py spark-2.4.4-bin-hadoop2.7/python/pyspark/sql/dataframe.py spark-2.4.4-bin-hadoop2.7/python/pyspark/sql/context.py spark-2.4.4-bin-hadoop2.7/python/pyspark/sql/window.py spark-2.4.4-bin-hadoop2.7/python/pyspark/sql/utils.py spark-2.4.4-bin-hadoop2.7/python/pyspark/sql/udf.py spark-2.4.4-bin-hadoop2.7/python/pyspark/sql/types.py spark-2.4.4-bin-hadoop2.7/python/pyspark/sql/group.py spark-2.4.4-bin-hadoop2.7/python/pyspark/sql/conf.py spark-2.4.4-bin-hadoop2.7/python/pyspark/sql/column.py spark-2.4.4-bin-hadoop2.7/python/pyspark/sql/catalog.py spark-2.4.4-bin-hadoop2.7/python/pyspark/sql/__init__.py spark-2.4.4-bin-hadoop2.7/python/pyspark/shell.py spark-2.4.4-bin-hadoop2.7/python/pyspark/resultiterable.py spark-2.4.4-bin-hadoop2.7/python/pyspark/rddsampler.py spark-2.4.4-bin-hadoop2.7/python/pyspark/mllib/ spark-2.4.4-bin-hadoop2.7/python/pyspark/mllib/util.py spark-2.4.4-bin-hadoop2.7/python/pyspark/mllib/tree.py spark-2.4.4-bin-hadoop2.7/python/pyspark/mllib/tests.py spark-2.4.4-bin-hadoop2.7/python/pyspark/mllib/regression.py spark-2.4.4-bin-hadoop2.7/python/pyspark/mllib/recommendation.py spark-2.4.4-bin-hadoop2.7/python/pyspark/mllib/random.py spark-2.4.4-bin-hadoop2.7/python/pyspark/mllib/fpm.py spark-2.4.4-bin-hadoop2.7/python/pyspark/mllib/feature.py spark-2.4.4-bin-hadoop2.7/python/pyspark/mllib/evaluation.py spark-2.4.4-bin-hadoop2.7/python/pyspark/mllib/clustering.py spark-2.4.4-bin-hadoop2.7/python/pyspark/mllib/classification.py spark-2.4.4-bin-hadoop2.7/python/pyspark/mllib/stat/ spark-2.4.4-bin-hadoop2.7/python/pyspark/mllib/stat/_statistics.py spark-2.4.4-bin-hadoop2.7/python/pyspark/mllib/stat/test.py spark-2.4.4-bin-hadoop2.7/python/pyspark/mllib/stat/distribution.py spark-2.4.4-bin-hadoop2.7/python/pyspark/mllib/stat/__init__.py spark-2.4.4-bin-hadoop2.7/python/pyspark/mllib/stat/KernelDensity.py spark-2.4.4-bin-hadoop2.7/python/pyspark/mllib/linalg/ spark-2.4.4-bin-hadoop2.7/python/pyspark/mllib/linalg/distributed.py spark-2.4.4-bin-hadoop2.7/python/pyspark/mllib/linalg/__init__.py spark-2.4.4-bin-hadoop2.7/python/pyspark/mllib/common.py spark-2.4.4-bin-hadoop2.7/python/pyspark/mllib/__init__.py spark-2.4.4-bin-hadoop2.7/python/pyspark/ml/ spark-2.4.4-bin-hadoop2.7/python/pyspark/ml/wrapper.py spark-2.4.4-bin-hadoop2.7/python/pyspark/ml/util.py spark-2.4.4-bin-hadoop2.7/python/pyspark/ml/tuning.py spark-2.4.4-bin-hadoop2.7/python/pyspark/ml/tests.py spark-2.4.4-bin-hadoop2.7/python/pyspark/ml/regression.py spark-2.4.4-bin-hadoop2.7/python/pyspark/ml/recommendation.py spark-2.4.4-bin-hadoop2.7/python/pyspark/ml/image.py spark-2.4.4-bin-hadoop2.7/python/pyspark/ml/fpm.py spark-2.4.4-bin-hadoop2.7/python/pyspark/ml/feature.py spark-2.4.4-bin-hadoop2.7/python/pyspark/ml/evaluation.py spark-2.4.4-bin-hadoop2.7/python/pyspark/ml/clustering.py spark-2.4.4-bin-hadoop2.7/python/pyspark/ml/classification.py spark-2.4.4-bin-hadoop2.7/python/pyspark/ml/stat.py spark-2.4.4-bin-hadoop2.7/python/pyspark/ml/pipeline.py spark-2.4.4-bin-hadoop2.7/python/pyspark/ml/param/ spark-2.4.4-bin-hadoop2.7/python/pyspark/ml/param/shared.py spark-2.4.4-bin-hadoop2.7/python/pyspark/ml/param/_shared_params_code_gen.py spark-2.4.4-bin-hadoop2.7/python/pyspark/ml/param/__init__.py spark-2.4.4-bin-hadoop2.7/python/pyspark/ml/linalg/ spark-2.4.4-bin-hadoop2.7/python/pyspark/ml/linalg/__init__.py spark-2.4.4-bin-hadoop2.7/python/pyspark/ml/common.py spark-2.4.4-bin-hadoop2.7/python/pyspark/ml/base.py spark-2.4.4-bin-hadoop2.7/python/pyspark/ml/__init__.py spark-2.4.4-bin-hadoop2.7/python/pyspark/join.py spark-2.4.4-bin-hadoop2.7/python/pyspark/heapq3.py spark-2.4.4-bin-hadoop2.7/python/pyspark/find_spark_home.py spark-2.4.4-bin-hadoop2.7/python/pyspark/_globals.py spark-2.4.4-bin-hadoop2.7/python/pylintrc spark-2.4.4-bin-hadoop2.7/python/lib/ spark-2.4.4-bin-hadoop2.7/python/lib/pyspark.zip spark-2.4.4-bin-hadoop2.7/python/lib/py4j-0.10.7-src.zip spark-2.4.4-bin-hadoop2.7/python/lib/PY4J_LICENSE.txt spark-2.4.4-bin-hadoop2.7/python/docs/ spark-2.4.4-bin-hadoop2.7/python/docs/pyspark.streaming.rst spark-2.4.4-bin-hadoop2.7/python/docs/pyspark.sql.rst spark-2.4.4-bin-hadoop2.7/python/docs/epytext.py spark-2.4.4-bin-hadoop2.7/python/docs/conf.py spark-2.4.4-bin-hadoop2.7/python/docs/Makefile spark-2.4.4-bin-hadoop2.7/python/docs/pyspark.rst spark-2.4.4-bin-hadoop2.7/python/docs/pyspark.mllib.rst spark-2.4.4-bin-hadoop2.7/python/docs/pyspark.ml.rst spark-2.4.4-bin-hadoop2.7/python/docs/make2.bat spark-2.4.4-bin-hadoop2.7/python/docs/make.bat spark-2.4.4-bin-hadoop2.7/python/docs/index.rst spark-2.4.4-bin-hadoop2.7/python/docs/_templates/ spark-2.4.4-bin-hadoop2.7/python/docs/_templates/layout.html spark-2.4.4-bin-hadoop2.7/python/docs/_static/ spark-2.4.4-bin-hadoop2.7/python/docs/_static/pyspark.js spark-2.4.4-bin-hadoop2.7/python/docs/_static/pyspark.css spark-2.4.4-bin-hadoop2.7/python/.gitignore spark-2.4.4-bin-hadoop2.7/python/.coveragerc spark-2.4.4-bin-hadoop2.7/bin/ spark-2.4.4-bin-hadoop2.7/bin/spark-class spark-2.4.4-bin-hadoop2.7/bin/pyspark2.cmd spark-2.4.4-bin-hadoop2.7/bin/pyspark spark-2.4.4-bin-hadoop2.7/bin/load-spark-env.sh spark-2.4.4-bin-hadoop2.7/bin/load-spark-env.cmd spark-2.4.4-bin-hadoop2.7/bin/docker-image-tool.sh spark-2.4.4-bin-hadoop2.7/bin/sparkR2.cmd spark-2.4.4-bin-hadoop2.7/bin/sparkR.cmd spark-2.4.4-bin-hadoop2.7/bin/sparkR spark-2.4.4-bin-hadoop2.7/bin/spark-submit2.cmd spark-2.4.4-bin-hadoop2.7/bin/spark-submit.cmd spark-2.4.4-bin-hadoop2.7/bin/spark-submit spark-2.4.4-bin-hadoop2.7/bin/spark-sql2.cmd spark-2.4.4-bin-hadoop2.7/bin/spark-sql.cmd spark-2.4.4-bin-hadoop2.7/bin/spark-sql spark-2.4.4-bin-hadoop2.7/bin/spark-shell2.cmd spark-2.4.4-bin-hadoop2.7/bin/spark-shell.cmd spark-2.4.4-bin-hadoop2.7/bin/spark-shell spark-2.4.4-bin-hadoop2.7/bin/spark-class2.cmd spark-2.4.4-bin-hadoop2.7/bin/spark-class.cmd spark-2.4.4-bin-hadoop2.7/bin/run-example.cmd spark-2.4.4-bin-hadoop2.7/bin/run-example spark-2.4.4-bin-hadoop2.7/bin/pyspark.cmd spark-2.4.4-bin-hadoop2.7/bin/find-spark-home.cmd spark-2.4.4-bin-hadoop2.7/bin/find-spark-home spark-2.4.4-bin-hadoop2.7/bin/beeline.cmd spark-2.4.4-bin-hadoop2.7/bin/beeline spark-2.4.4-bin-hadoop2.7/README.md spark-2.4.4-bin-hadoop2.7/conf/ spark-2.4.4-bin-hadoop2.7/conf/spark-env.sh.template spark-2.4.4-bin-hadoop2.7/conf/spark-defaults.conf.template spark-2.4.4-bin-hadoop2.7/conf/slaves.template spark-2.4.4-bin-hadoop2.7/conf/metrics.properties.template spark-2.4.4-bin-hadoop2.7/conf/log4j.properties.template spark-2.4.4-bin-hadoop2.7/conf/fairscheduler.xml.template spark-2.4.4-bin-hadoop2.7/conf/docker.properties.template spark-2.4.4-bin-hadoop2.7/data/ spark-2.4.4-bin-hadoop2.7/data/mllib/ spark-2.4.4-bin-hadoop2.7/data/mllib/gmm_data.txt spark-2.4.4-bin-hadoop2.7/data/mllib/als/ spark-2.4.4-bin-hadoop2.7/data/mllib/als/test.data spark-2.4.4-bin-hadoop2.7/data/mllib/als/sample_movielens_ratings.txt spark-2.4.4-bin-hadoop2.7/data/mllib/streaming_kmeans_data_test.txt spark-2.4.4-bin-hadoop2.7/data/mllib/sample_svm_data.txt spark-2.4.4-bin-hadoop2.7/data/mllib/sample_multiclass_classification_data.txt spark-2.4.4-bin-hadoop2.7/data/mllib/sample_movielens_data.txt spark-2.4.4-bin-hadoop2.7/data/mllib/sample_linear_regression_data.txt spark-2.4.4-bin-hadoop2.7/data/mllib/sample_libsvm_data.txt spark-2.4.4-bin-hadoop2.7/data/mllib/sample_lda_libsvm_data.txt spark-2.4.4-bin-hadoop2.7/data/mllib/sample_lda_data.txt spark-2.4.4-bin-hadoop2.7/data/mllib/sample_kmeans_data.txt spark-2.4.4-bin-hadoop2.7/data/mllib/sample_isotonic_regression_libsvm_data.txt spark-2.4.4-bin-hadoop2.7/data/mllib/sample_fpgrowth.txt spark-2.4.4-bin-hadoop2.7/data/mllib/sample_binary_classification_data.txt spark-2.4.4-bin-hadoop2.7/data/mllib/ridge-data/ spark-2.4.4-bin-hadoop2.7/data/mllib/ridge-data/lpsa.data spark-2.4.4-bin-hadoop2.7/data/mllib/pic_data.txt spark-2.4.4-bin-hadoop2.7/data/mllib/pagerank_data.txt spark-2.4.4-bin-hadoop2.7/data/mllib/kmeans_data.txt spark-2.4.4-bin-hadoop2.7/data/mllib/iris_libsvm.txt spark-2.4.4-bin-hadoop2.7/data/mllib/images/ spark-2.4.4-bin-hadoop2.7/data/mllib/images/partitioned/ spark-2.4.4-bin-hadoop2.7/data/mllib/images/partitioned/cls=multichannel/ spark-2.4.4-bin-hadoop2.7/data/mllib/images/partitioned/cls=multichannel/date=2018-02/ spark-2.4.4-bin-hadoop2.7/data/mllib/images/partitioned/cls=multichannel/date=2018-02/grayscale.jpg spark-2.4.4-bin-hadoop2.7/data/mllib/images/partitioned/cls=multichannel/date=2018-02/chr30.4.184.jpg spark-2.4.4-bin-hadoop2.7/data/mllib/images/partitioned/cls=multichannel/date=2018-01/ spark-2.4.4-bin-hadoop2.7/data/mllib/images/partitioned/cls=multichannel/date=2018-01/BGRA_alpha_60.png spark-2.4.4-bin-hadoop2.7/data/mllib/images/partitioned/cls=multichannel/date=2018-01/BGRA.png spark-2.4.4-bin-hadoop2.7/data/mllib/images/partitioned/cls=kittens/ spark-2.4.4-bin-hadoop2.7/data/mllib/images/partitioned/cls=kittens/date=2018-02/ spark-2.4.4-bin-hadoop2.7/data/mllib/images/partitioned/cls=kittens/date=2018-02/DP802813.jpg spark-2.4.4-bin-hadoop2.7/data/mllib/images/partitioned/cls=kittens/date=2018-02/DP153539.jpg spark-2.4.4-bin-hadoop2.7/data/mllib/images/partitioned/cls=kittens/date=2018-02/54893.jpg spark-2.4.4-bin-hadoop2.7/data/mllib/images/partitioned/cls=kittens/date=2018-01/ spark-2.4.4-bin-hadoop2.7/data/mllib/images/partitioned/cls=kittens/date=2018-01/not-image.txt spark-2.4.4-bin-hadoop2.7/data/mllib/images/partitioned/cls=kittens/date=2018-01/29.5.a_b_EGDP022204.jpg spark-2.4.4-bin-hadoop2.7/data/mllib/images/origin/ spark-2.4.4-bin-hadoop2.7/data/mllib/images/origin/multi-channel/ spark-2.4.4-bin-hadoop2.7/data/mllib/images/origin/multi-channel/grayscale.jpg spark-2.4.4-bin-hadoop2.7/data/mllib/images/origin/multi-channel/chr30.4.184.jpg spark-2.4.4-bin-hadoop2.7/data/mllib/images/origin/multi-channel/BGRA_alpha_60.png spark-2.4.4-bin-hadoop2.7/data/mllib/images/origin/multi-channel/BGRA.png spark-2.4.4-bin-hadoop2.7/data/mllib/images/origin/license.txt spark-2.4.4-bin-hadoop2.7/data/mllib/images/origin/kittens/ spark-2.4.4-bin-hadoop2.7/data/mllib/images/origin/kittens/not-image.txt spark-2.4.4-bin-hadoop2.7/data/mllib/images/origin/kittens/DP802813.jpg spark-2.4.4-bin-hadoop2.7/data/mllib/images/origin/kittens/DP153539.jpg spark-2.4.4-bin-hadoop2.7/data/mllib/images/origin/kittens/54893.jpg spark-2.4.4-bin-hadoop2.7/data/mllib/images/origin/kittens/29.5.a_b_EGDP022204.jpg spark-2.4.4-bin-hadoop2.7/data/mllib/images/license.txt spark-2.4.4-bin-hadoop2.7/data/graphx/ spark-2.4.4-bin-hadoop2.7/data/graphx/users.txt spark-2.4.4-bin-hadoop2.7/data/graphx/followers.txt spark-2.4.4-bin-hadoop2.7/data/streaming/ spark-2.4.4-bin-hadoop2.7/data/streaming/AFINN-111.txt spark-2.4.4-bin-hadoop2.7/NOTICE spark-2.4.4-bin-hadoop2.7/licenses/ spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-jtransforms.html spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-json-formatter.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-jquery.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-join.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-jodd.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-jline.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-javolution.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-javassist.html spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-janino.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-heapq.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-graphlib-dot.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-f2j.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-datatables.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-dagre-d3.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-d3.min.js.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-cloudpickle.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-bootstrap.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-automaton.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-arpack.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-antlr.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-CC0.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-AnchorJS.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-zstd.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-zstd-jni.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-xmlenc.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-vis.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-spire.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-sorttable.js.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-slf4j.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-scopt.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-scala.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-sbt-launch-lib.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-respond.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-reflectasm.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-pyrolite.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-py4j.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-protobuf.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-pmml-model.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-paranamer.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-netlib.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-mustache.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-modernizr.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-minlog.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-matchMedia-polyfill.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-machinist.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-leveldbjni.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-kryo.txt spark-2.4.4-bin-hadoop2.7/LICENSE spark-2.4.4-bin-hadoop2.7/examples/ spark-2.4.4-bin-hadoop2.7/examples/src/ spark-2.4.4-bin-hadoop2.7/examples/src/main/ spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/ spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/ spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/ spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/ spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/ spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/ElementwiseProductExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/DenseKMeans.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/DecisionTreeRegressionExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/DecisionTreeClassificationExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/CosineSimilarity.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/CorrelationsExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/Correlations.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/ChiSqSelectorExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/BisectingKMeansExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/BinaryClassificationMetricsExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/AssociationRulesExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/AbstractParams.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/Word2VecExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/TallSkinnySVD.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/TallSkinnyPCA.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/TFIDFExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/SummaryStatisticsExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/StreamingTestExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/StreamingLogisticRegression.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/StreamingLinearRegressionExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/StreamingKMeansExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/StratifiedSamplingExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/StandardScalerExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/SparseNaiveBayes.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/SimpleFPGrowth.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/SampledRDDs.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/SVMWithSGDExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/SVDExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/RegressionMetricsExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/RecommendationExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/RandomRDDGeneration.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/RandomForestRegressionExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/RandomForestClassificationExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/PrefixSpanExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/PowerIterationClusteringExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/PMMLModelExportExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/PCAOnSourceVectorExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/PCAOnRowMatrixExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/PCAExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/NormalizerExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/NaiveBayesExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/MultivariateSummarizer.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/MulticlassMetricsExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/MultiLabelMetricsExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/LogisticRegressionWithLBFGSExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/LinearRegressionWithSGDExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/LatentDirichletAllocationExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/LDAExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/LBFGSExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/KernelDensityEstimationExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/KMeansExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/IsotonicRegressionExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/HypothesisTestingKolmogorovSmirnovTestExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/HypothesisTestingExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/GradientBoostingRegressionExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/GradientBoostingClassificationExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/GaussianMixtureExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/FPGrowthExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/RankingMetricsExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/MovieLensALS.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/LinearRegression.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/GradientBoostedTreesRunner.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/DecisionTreeRunner.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/BinaryClassification.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/ spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/Word2VecExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/VectorSlicerExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/VectorSizeHintExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/VectorIndexerExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/VectorAssemblerExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/UnaryTransformerExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/TokenizerExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/TfIdfExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/SummarizerExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/StringIndexerExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/StopWordsRemoverExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/StandardScalerExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/SQLTransformerExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/RandomForestRegressorExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/RandomForestExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/RFormulaExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/QuantileDiscretizerExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/PowerIterationClusteringExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/PolynomialExpansionExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/PipelineExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/PCAExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/OneVsRestExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/NormalizerExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/NaiveBayesExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/NGramExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/MultilayerPerceptronClassifierExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/MulticlassLogisticRegressionWithElasticNetExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/ModelSelectionViaTrainValidationSplitExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/ModelSelectionViaCrossValidationExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/MinMaxScalerExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/MinHashLSHExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/MaxAbsScalerExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/LogisticRegressionWithElasticNetExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/LogisticRegressionSummaryExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/LogisticRegressionExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/LinearSVCExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/LinearRegressionWithElasticNetExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/LinearRegressionExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/LDAExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/KMeansExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/IsotonicRegressionExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/InteractionExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/IndexToStringExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/ImputerExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/GradientBoostedTreeRegressorExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/GeneralizedLinearRegressionExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/GaussianMixtureExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/GBTExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/FeatureHasherExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/EstimatorTransformerParamExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/ElementwiseProductExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/DeveloperApiExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/DecisionTreeRegressionExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/DecisionTreeExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/DataFrameExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/DCTExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/CountVectorizerExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/CorrelationExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/ChiSquareTestExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/ChiSqSelectorExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/BucketizerExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/BucketedRandomProjectionLSHExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/BinarizerExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/ALSExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/AFTSurvivalRegressionExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/RandomForestClassifierExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/PrefixSpanExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/OneHotEncoderEstimatorExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/GradientBoostedTreeClassifierExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/FPGrowthExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/DecisionTreeClassificationExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/BisectingKMeansExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/graphx/ spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/graphx/TriangleCountingExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/graphx/SynthBenchmark.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/graphx/SSSPExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/graphx/PageRankExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/graphx/LiveJournalPageRank.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/graphx/ConnectedComponentsExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/graphx/ComprehensiveExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/graphx/Analytics.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/graphx/AggregateMessagesExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/SparkTC.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/SparkRemoteFileTest.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/SparkPi.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/SparkPageRank.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/SparkLR.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/SparkKMeans.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/SparkHdfsLR.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/SparkALS.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/SkewedGroupByTest.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/SimpleSkewedGroupByTest.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/MultiBroadcastTest.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/LocalPi.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/LocalLR.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/LocalKMeans.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/LocalFileLR.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/LocalALS.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/GroupByTest.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ExceptionHandlingTest.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/DriverSubmissionTest.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/BroadcastTest.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/streaming/ spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/streaming/clickstream/ spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/streaming/clickstream/PageViewStream.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/streaming/clickstream/PageViewGenerator.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/streaming/StreamingExamples.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/streaming/StatefulNetworkWordCount.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/streaming/SqlNetworkWordCount.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/streaming/RecoverableNetworkWordCount.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/streaming/RawNetworkGrep.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/streaming/QueueStream.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/streaming/NetworkWordCount.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/streaming/HdfsWordCount.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/streaming/DirectKafkaWordCount.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/streaming/CustomReceiver.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/sql/ spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/sql/streaming/ spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/sql/streaming/StructuredSessionization.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/sql/streaming/StructuredNetworkWordCountWindowed.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/sql/streaming/StructuredNetworkWordCount.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/sql/streaming/StructuredKafkaWordCount.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/sql/hive/ spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/sql/hive/SparkHiveExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/sql/UserDefinedUntypedAggregation.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/sql/UserDefinedTypedAggregation.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/sql/RDDRelation.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/sql/SparkSQLExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/sql/SQLDataSourceExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/pythonconverters/ spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/pythonconverters/AvroConverters.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/LogQuery.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/HdfsTest.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/DFSReadWriteTest.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/resources/ spark-2.4.4-bin-hadoop2.7/examples/src/main/resources/users.parquet spark-2.4.4-bin-hadoop2.7/examples/src/main/resources/users.orc spark-2.4.4-bin-hadoop2.7/examples/src/main/resources/users.avro spark-2.4.4-bin-hadoop2.7/examples/src/main/resources/user.avsc spark-2.4.4-bin-hadoop2.7/examples/src/main/resources/people.txt spark-2.4.4-bin-hadoop2.7/examples/src/main/resources/people.json spark-2.4.4-bin-hadoop2.7/examples/src/main/resources/people.csv spark-2.4.4-bin-hadoop2.7/examples/src/main/resources/kv1.txt spark-2.4.4-bin-hadoop2.7/examples/src/main/resources/full_user.avsc spark-2.4.4-bin-hadoop2.7/examples/src/main/resources/employees.json spark-2.4.4-bin-hadoop2.7/examples/src/main/r/ spark-2.4.4-bin-hadoop2.7/examples/src/main/r/streaming/ spark-2.4.4-bin-hadoop2.7/examples/src/main/r/streaming/structured_network_wordcount.R spark-2.4.4-bin-hadoop2.7/examples/src/main/r/ml/ spark-2.4.4-bin-hadoop2.7/examples/src/main/r/ml/svmLinear.R spark-2.4.4-bin-hadoop2.7/examples/src/main/r/ml/survreg.R spark-2.4.4-bin-hadoop2.7/examples/src/main/r/ml/randomForest.R spark-2.4.4-bin-hadoop2.7/examples/src/main/r/ml/naiveBayes.R spark-2.4.4-bin-hadoop2.7/examples/src/main/r/ml/mlp.R spark-2.4.4-bin-hadoop2.7/examples/src/main/r/ml/ml.R spark-2.4.4-bin-hadoop2.7/examples/src/main/r/ml/logit.R spark-2.4.4-bin-hadoop2.7/examples/src/main/r/ml/lda.R spark-2.4.4-bin-hadoop2.7/examples/src/main/r/ml/kstest.R spark-2.4.4-bin-hadoop2.7/examples/src/main/r/ml/kmeans.R spark-2.4.4-bin-hadoop2.7/examples/src/main/r/ml/isoreg.R spark-2.4.4-bin-hadoop2.7/examples/src/main/r/ml/glm.R spark-2.4.4-bin-hadoop2.7/examples/src/main/r/ml/gbt.R spark-2.4.4-bin-hadoop2.7/examples/src/main/r/ml/gaussianMixture.R spark-2.4.4-bin-hadoop2.7/examples/src/main/r/ml/fpm.R spark-2.4.4-bin-hadoop2.7/examples/src/main/r/ml/decisionTree.R spark-2.4.4-bin-hadoop2.7/examples/src/main/r/ml/bisectingKmeans.R spark-2.4.4-bin-hadoop2.7/examples/src/main/r/ml/als.R spark-2.4.4-bin-hadoop2.7/examples/src/main/r/dataframe.R spark-2.4.4-bin-hadoop2.7/examples/src/main/r/data-manipulation.R spark-2.4.4-bin-hadoop2.7/examples/src/main/r/RSparkSQLExample.R spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ spark-2.4.4-bin-hadoop2.7/examples/src/main/python/wordcount.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/transitive_closure.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/streaming/ spark-2.4.4-bin-hadoop2.7/examples/src/main/python/streaming/stateful_network_wordcount.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/streaming/sql_network_wordcount.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/streaming/queue_stream.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/streaming/network_wordjoinsentiments.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/streaming/network_wordcount.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/streaming/hdfs_wordcount.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/streaming/recoverable_network_wordcount.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/streaming/kafka_wordcount.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/streaming/flume_wordcount.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/streaming/direct_kafka_wordcount.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/status_api_demo.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/sql/ spark-2.4.4-bin-hadoop2.7/examples/src/main/python/sql/streaming/ spark-2.4.4-bin-hadoop2.7/examples/src/main/python/sql/streaming/structured_network_wordcount_windowed.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/sql/streaming/structured_network_wordcount.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/sql/streaming/structured_kafka_wordcount.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/sql/basic.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/sql/hive.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/sql/datasource.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/sql/arrow.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/sort.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/pi.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/parquet_inputformat.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/pagerank.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/ spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/word2vec_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/word2vec.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/tf_idf_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/svm_with_sgd_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/svd_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/summary_statistics_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/streaming_linear_regression_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/streaming_k_means_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/stratified_sampling_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/sampled_rdds.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/regression_metrics_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/recommendation_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/random_rdd_generation.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/random_forest_regression_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/random_forest_classification_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/power_iteration_clustering_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/pca_rowmatrix_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/normalizer_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/naive_bayes_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/multi_label_metrics_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/logistic_regression_with_lbfgs_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/logistic_regression.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/linear_regression_with_sgd_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/latent_dirichlet_allocation_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/kmeans.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/kernel_density_estimation_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/k_means_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/hypothesis_testing_kolmogorov_smirnov_test_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/hypothesis_testing_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/gradient_boosting_regression_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/gradient_boosting_classification_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/gaussian_mixture_model.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/gaussian_mixture_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/fpgrowth_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/elementwise_product_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/decision_tree_regression_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/decision_tree_classification_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/correlations_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/correlations.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/binary_classification_metrics_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/standard_scaler_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/ranking_metrics_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/multi_class_metrics_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/isotonic_regression_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/bisecting_k_means_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/ spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/word2vec_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/vector_slicer_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/vector_size_hint_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/vector_indexer_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/vector_assembler_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/train_validation_split.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/tokenizer_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/tf_idf_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/summarizer_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/string_indexer_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/stopwords_remover_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/standard_scaler_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/sql_transformer.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/rformula_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/random_forest_regressor_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/random_forest_classifier_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/quantile_discretizer_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/prefixspan_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/polynomial_expansion_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/pipeline_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/pca_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/one_vs_rest_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/normalizer_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/naive_bayes_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/n_gram_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/multilayer_perceptron_classification.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/multiclass_logistic_regression_with_elastic_net.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/min_max_scaler_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/min_hash_lsh_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/max_abs_scaler_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/logistic_regression_with_elastic_net.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/logistic_regression_summary_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/linearsvc.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/linear_regression_with_elastic_net.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/lda_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/kmeans_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/isotonic_regression_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/index_to_string_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/imputer_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/gradient_boosted_tree_regressor_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/gradient_boosted_tree_classifier_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/generalized_linear_regression_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/gaussian_mixture_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/fpgrowth_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/feature_hasher_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/estimator_transformer_param_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/elementwise_product_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/decision_tree_regression_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/decision_tree_classification_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/dct_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/dataframe_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/cross_validator.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/count_vectorizer_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/correlation_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/chisq_selector_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/chi_square_test_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/bucketizer_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/bucketed_random_projection_lsh_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/binarizer_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/als_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/aft_survival_regression.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/onehot_encoder_estimator_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/bisecting_k_means_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/logistic_regression.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/kmeans.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/avro_inputformat.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/als.py spark-2.4.4-bin-hadoop2.7/examples/src/main/java/ spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/ spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/ spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/ spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/streaming/ spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/streaming/JavaStatefulNetworkWordCount.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/streaming/JavaSqlNetworkWordCount.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/streaming/JavaRecoverableNetworkWordCount.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/streaming/JavaRecord.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/streaming/JavaQueueStream.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/streaming/JavaNetworkWordCount.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/streaming/JavaDirectKafkaWordCount.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/streaming/JavaCustomReceiver.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/sql/ spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/sql/streaming/ spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/sql/streaming/JavaStructuredNetworkWordCountWindowed.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/sql/streaming/JavaStructuredNetworkWordCount.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/sql/streaming/JavaStructuredKafkaWordCount.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/sql/streaming/JavaStructuredSessionization.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/sql/hive/ spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/sql/hive/JavaSparkHiveExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/sql/JavaUserDefinedUntypedAggregation.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/sql/JavaUserDefinedTypedAggregation.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/sql/JavaSparkSQLExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/sql/JavaSQLDataSourceExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/ spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaSummaryStatisticsExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaStreamingTestExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaStratifiedSamplingExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaSimpleFPGrowth.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaSVMWithSGDExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaSVDExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaRegressionMetricsExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaRecommendationExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaRandomForestRegressionExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaPrefixSpanExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaPowerIterationClusteringExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaPCAExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaNaiveBayesExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaMulticlassClassificationMetricsExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaMultiLabelClassificationMetricsExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaLogisticRegressionWithLBFGSExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaLinearRegressionWithSGDExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaLatentDirichletAllocationExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaLBFGSExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaKernelDensityEstimationExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaKMeansExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaIsotonicRegressionExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaHypothesisTestingKolmogorovSmirnovTestExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaHypothesisTestingExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaGradientBoostingRegressionExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaGradientBoostingClassificationExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaGaussianMixtureExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaElementwiseProductExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaDecisionTreeRegressionExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaDecisionTreeClassificationExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaChiSqSelectorExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaBisectingKMeansExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaBinaryClassificationMetricsExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaAssociationRulesExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaALS.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaRankingMetricsExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaRandomForestClassificationExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaCorrelationsExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/ spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaWord2VecExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaVectorSlicerExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaVectorSizeHintExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaVectorIndexerExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaVectorAssemblerExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaTokenizerExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaTfIdfExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaSummarizerExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaStringIndexerExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaStopWordsRemoverExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaStandardScalerExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaSQLTransformerExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaRandomForestRegressorExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaRFormulaExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaQuantileDiscretizerExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaPowerIterationClusteringExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaPolynomialExpansionExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaPipelineExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaPCAExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaOneVsRestExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaNormalizerExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaNaiveBayesExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaNGramExample.java spark-2