Started by upstream project "ADAM-prb" build number 3057 originally caused by: GitHub pull request #2209 of commit f1e43b8060ba2e7b39e8bb46d016e29c2f5d0d5a automatically merged. [EnvInject] - Loading node environment variables. Building remotely on research-jenkins-worker-09 (ubuntu ubuntu-gpu research-09 ubuntu-avx2) in workspace /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu Wiping out workspace first. Cloning the remote Git repository Cloning repository https://github.com/bigdatagenomics/adam.git > git init /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu # timeout=10 Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/heads/*:refs/remotes/origin/* # timeout=15 > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10 Fetching upstream changes from https://github.com/bigdatagenomics/adam.git > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/*:refs/remotes/origin/pr/* # timeout=15 Checking out Revision e785e791c63cead7c89796121ba7fa17d38ca2af (origin/pr/2209/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f e785e791c63cead7c89796121ba7fa17d38ca2af First time build. Skipping changelog. [ubuntu] $ /bin/bash /tmp/hudson6696732480385374050.sh + set -e + unset SPARK_TESTING + export JAVA_HOME=/usr/lib/jvm/java-8-oracle + JAVA_HOME=/usr/lib/jvm/java-8-oracle + export CONDA_BIN=/home/anaconda/bin/ + CONDA_BIN=/home/anaconda/bin/ + export PATH=/usr/lib/jvm/java-8-oracle/bin/:/home/anaconda/bin/:/home/jenkins/gems/bin:/usr/local/go/bin:/home/jenkins/go-projects/bin:/home/jenkins/anaconda2/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games + PATH=/usr/lib/jvm/java-8-oracle/bin/:/home/anaconda/bin/:/home/jenkins/gems/bin:/usr/local/go/bin:/home/jenkins/go-projects/bin:/home/jenkins/anaconda2/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games + set +x + /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/scripts/jenkins-test # make a tempdir for writing maven cruft to ADAM_MVN_TMP_DIR=$(mktemp -d -t adamTestMvnXXXXXXX) mktemp -d -t adamTestMvnXXXXXXX ++ mktemp -d -t adamTestMvnXXXXXXX + ADAM_MVN_TMP_DIR=/tmp/adamTestMvnQOhk7M0 # add this tempdir to the poms... find . -name pom.xml \ -exec sed -i.bak \ -e "s:sun.io.serialization.extendedDebugInfo=true:sun.io.serialization.extendedDebugInfo=true -Djava.io.tmpdir=${ADAM_MVN_TMP_DIR}:g" \ {} \; + find . -name pom.xml -exec sed -i.bak -e 's:sun.io.serialization.extendedDebugInfo=true:sun.io.serialization.extendedDebugInfo=true -Djava.io.tmpdir=/tmp/adamTestMvnQOhk7M0:g' '{}' ';' find . -name "*.bak" -exec rm -f {} \; + find . -name '*.bak' -exec rm -f '{}' ';' # variable declarations export PATH=${JAVA_HOME}/bin/:${PATH} + export PATH=/usr/lib/jvm/java-8-oracle/bin/:/usr/lib/jvm/java-8-oracle/bin/:/home/anaconda/bin/:/home/jenkins/gems/bin:/usr/local/go/bin:/home/jenkins/go-projects/bin:/home/jenkins/anaconda2/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games + PATH=/usr/lib/jvm/java-8-oracle/bin/:/usr/lib/jvm/java-8-oracle/bin/:/home/anaconda/bin/:/home/jenkins/gems/bin:/usr/local/go/bin:/home/jenkins/go-projects/bin:/home/jenkins/anaconda2/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games export MAVEN_OPTS="-Xmx1536m -XX:MaxPermSize=1g -Dfile.encoding=utf-8" + export 'MAVEN_OPTS=-Xmx1536m -XX:MaxPermSize=1g -Dfile.encoding=utf-8' + MAVEN_OPTS='-Xmx1536m -XX:MaxPermSize=1g -Dfile.encoding=utf-8' DIR=$( cd $( dirname ${BASH_SOURCE[0]} ) && pwd ) cd $( dirname ${BASH_SOURCE[0]} ) && pwd dirname ${BASH_SOURCE[0]} +++ dirname /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/scripts/jenkins-test ++ cd /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/scripts ++ pwd + DIR=/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/scripts PROJECT_ROOT=${DIR}/.. + PROJECT_ROOT=/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/scripts/.. VERSION=$(grep "" ${PROJECT_ROOT}/pom.xml | head -2 | tail -1 | sed 's/ *//g' | sed 's/<\/version>//g') grep "" ${PROJECT_ROOT}/pom.xml | head -2 | tail -1 | sed 's/ *//g' | sed 's/<\/version>//g' ++ grep '' /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/scripts/../pom.xml ++ tail -1 ++ sed 's/ *//g' ++ sed 's/<\/version>//g' ++ head -2 + VERSION=0.29.0-SNAPSHOT # is the hadoop version set? if ! [[ ${HADOOP_VERSION} ]]; then echo "HADOOP_VERSION environment variable is not set." echo "Please set this variable before running." exit 1 fi + [[ -n 2.7.5 ]] # is the spark version set? if ! [[ ${SPARK_VERSION} ]]; then echo "SPARK_VERSION environment variable is not set." echo "Please set this variable before running." exit 1 fi + [[ -n 2.4.4 ]] set -e + set -e # build defaults to Scala 2.11 if [ ${SCALAVER} == 2.11 ]; then # shouldn't be able to move to scala 2.11 twice set +e ./scripts/move_to_scala_2.11.sh if [[ $? == 0 ]]; then echo "We have already moved to Scala 2.11, so running move_to_scala_2.11.sh a second time should fail, but error code was 0 (success)." exit 1 fi set -e fi + '[' 2.11 == 2.11 ']' + set +e + ./scripts/move_to_scala_2.11.sh Scala version is already set to 2.11 (Scala artifacts have _2.11 version suffix in artifact name). Cowardly refusing to move to Scala 2.11 a second time... + [[ 1 == 0 ]] + set -e # move to Scala 2.12 if requested if [ ${SCALAVER} == 2.12 ]; then set +e ./scripts/move_to_scala_2.12.sh set -e fi + '[' 2.11 == 2.12 ']' # print versions echo "Testing ADAM version ${VERSION} on Spark ${SPARK_VERSION} and Hadoop ${HADOOP_VERSION}" + echo 'Testing ADAM version 0.29.0-SNAPSHOT on Spark 2.4.4 and Hadoop 2.7.5' Testing ADAM version 0.29.0-SNAPSHOT on Spark 2.4.4 and Hadoop 2.7.5 # first, build the sources, run the unit tests, and generate a coverage report mvn clean \ -Dhadoop.version=${HADOOP_VERSION} + mvn clean -Dhadoop.version=2.7.5 OpenJDK 64-Bit Server VM warning: ignoring option MaxPermSize=1g; support was removed in 8.0 [INFO] Scanning for projects... [INFO] ------------------------------------------------------------------------ [INFO] Reactor Build Order: [INFO] [INFO] ADAM_2.11 [INFO] ADAM_2.11: Shader workaround [INFO] ADAM_2.11: Avro-to-Dataset codegen utils [INFO] ADAM_2.11: Core [INFO] ADAM_2.11: APIs for Java, Python [INFO] ADAM_2.11: CLI [INFO] ADAM_2.11: Assembly [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building ADAM_2.11 0.29.0-SNAPSHOT [INFO] ------------------------------------------------------------------------ [INFO] [INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ adam-parent-spark2_2.11 --- [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building ADAM_2.11: Shader workaround 0.29.0-SNAPSHOT [INFO] ------------------------------------------------------------------------ [INFO] [INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ adam-shade-spark2_2.11 --- [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building ADAM_2.11: Avro-to-Dataset codegen utils 0.29.0-SNAPSHOT [INFO] ------------------------------------------------------------------------ [INFO] [INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ adam-codegen-spark2_2.11 --- [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building ADAM_2.11: Core 0.29.0-SNAPSHOT [INFO] ------------------------------------------------------------------------ [INFO] [INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ adam-core-spark2_2.11 --- [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building ADAM_2.11: APIs for Java, Python 0.29.0-SNAPSHOT [INFO] ------------------------------------------------------------------------ [INFO] [INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ adam-apis-spark2_2.11 --- [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building ADAM_2.11: CLI 0.29.0-SNAPSHOT [INFO] ------------------------------------------------------------------------ [INFO] [INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ adam-cli-spark2_2.11 --- [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building ADAM_2.11: Assembly 0.29.0-SNAPSHOT [INFO] ------------------------------------------------------------------------ [INFO] [INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ adam-assembly-spark2_2.11 --- [INFO] ------------------------------------------------------------------------ [INFO] Reactor Summary: [INFO] [INFO] ADAM_2.11 .......................................... SUCCESS [ 0.350 s] [INFO] ADAM_2.11: Shader workaround ....................... SUCCESS [ 0.010 s] [INFO] ADAM_2.11: Avro-to-Dataset codegen utils ........... SUCCESS [ 0.008 s] [INFO] ADAM_2.11: Core .................................... SUCCESS [ 0.016 s] [INFO] ADAM_2.11: APIs for Java, Python ................... SUCCESS [ 0.002 s] [INFO] ADAM_2.11: CLI ..................................... SUCCESS [ 0.029 s] [INFO] ADAM_2.11: Assembly ................................ SUCCESS [ 0.002 s] [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ [INFO] Total time: 0.845 s [INFO] Finished at: 2019-09-18T10:16:31-07:00 [INFO] Final Memory: 23M/1472M [INFO] ------------------------------------------------------------------------ # if this is a pull request, we need to set the coveralls pr id if [[ ! -z $ghprbPullId ]]; then COVERALLS_PRB_OPTION="-DpullRequest=${ghprbPullId}" fi + [[ ! -z 2209 ]] + COVERALLS_PRB_OPTION=-DpullRequest=2209 # coveralls token should not be visible set +x +v + set +x +v OpenJDK 64-Bit Server VM warning: ignoring option MaxPermSize=1g; support was removed in 8.0 [INFO] Scanning for projects... [INFO] ------------------------------------------------------------------------ [INFO] Reactor Build Order: [INFO] [INFO] ADAM_2.11 [INFO] ADAM_2.11: Shader workaround [INFO] ADAM_2.11: Avro-to-Dataset codegen utils [INFO] ADAM_2.11: Core [INFO] ADAM_2.11: APIs for Java, Python [INFO] ADAM_2.11: CLI [INFO] ADAM_2.11: Assembly [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building ADAM_2.11 0.29.0-SNAPSHOT [INFO] ------------------------------------------------------------------------ [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-parent-spark2_2.11 --- [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-parent-spark2_2.11 --- [INFO] [INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-parent-spark2_2.11 --- [INFO] Modified 0 of 241 .scala files [INFO] [INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-parent-spark2_2.11 --- [INFO] No sources to compile [INFO] [INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-parent-spark2_2.11 --- [INFO] No sources to compile [INFO] [INFO] >>> scoverage-maven-plugin:1.1.1:report (default-cli) > [scoverage]test @ adam-parent-spark2_2.11 >>> [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-parent-spark2_2.11 --- [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-parent-spark2_2.11 --- [INFO] [INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-parent-spark2_2.11 --- [INFO] Modified 0 of 241 .scala files [INFO] [INFO] --- scoverage-maven-plugin:1.1.1:pre-compile (default-cli) @ adam-parent-spark2_2.11 --- [INFO] Skipping SCoverage execution for project with packaging type 'pom' [INFO] [INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-parent-spark2_2.11 --- [INFO] No sources to compile [INFO] [INFO] --- scoverage-maven-plugin:1.1.1:post-compile (default-cli) @ adam-parent-spark2_2.11 --- [INFO] [INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-parent-spark2_2.11 --- [INFO] No sources to compile [INFO] [INFO] <<< scoverage-maven-plugin:1.1.1:report (default-cli) < [scoverage]test @ adam-parent-spark2_2.11 <<< [INFO] [INFO] --- scoverage-maven-plugin:1.1.1:report (default-cli) @ adam-parent-spark2_2.11 --- [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building ADAM_2.11: Shader workaround 0.29.0-SNAPSHOT [INFO] ------------------------------------------------------------------------ [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-shade-spark2_2.11 --- [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-shade-spark2_2.11 --- [INFO] [INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-shade-spark2_2.11 --- [INFO] Modified 0 of 0 .scala files [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-shade-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/src/main/resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-shade-spark2_2.11 --- [INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/src/main/java:-1: info: compiling [INFO] Compiling 1 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/target/2.11.12/classes at 1568827008582 [INFO] prepare-compile in 0 s [INFO] compile in 1 s [INFO] [INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-shade-spark2_2.11 --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 1 source file to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/target/2.11.12/classes [INFO] [INFO] --- plexus-component-metadata:1.5.5:generate-metadata (default) @ adam-shade-spark2_2.11 --- [INFO] Discovered 1 component descriptors(s) [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-shade-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/src/test/resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-shade-spark2_2.11 --- [INFO] No sources to compile [INFO] [INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-shade-spark2_2.11 --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-shade-spark2_2.11 --- [INFO] No tests to run. [INFO] [INFO] >>> scoverage-maven-plugin:1.1.1:report (default-cli) > [scoverage]test @ adam-shade-spark2_2.11 >>> [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-shade-spark2_2.11 --- [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-shade-spark2_2.11 --- [INFO] [INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-shade-spark2_2.11 --- [INFO] Modified 0 of 0 .scala files [INFO] [INFO] --- scoverage-maven-plugin:1.1.1:pre-compile (default-cli) @ adam-shade-spark2_2.11 --- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-shade-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/src/main/resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-shade-spark2_2.11 --- [INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/src/main/java:-1: info: compiling [INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/target/generated-sources/annotations:-1: info: compiling [INFO] Compiling 1 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/target/2.11.12/scoverage-classes at 1568827011526 [INFO] [info] Cleaning datadir [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/target/scoverage-data] [INFO] [info] Beginning coverage instrumentation [INFO] [info] Instrumentation completed [0 statements] [INFO] [info] Wrote instrumentation file [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/target/scoverage-data/scoverage.coverage.xml] [INFO] [info] Will write measurement data to [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/target/scoverage-data] [INFO] prepare-compile in 0 s [INFO] compile in 1 s [INFO] [INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-shade-spark2_2.11 --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 1 source file to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/target/2.11.12/scoverage-classes [INFO] [INFO] --- plexus-component-metadata:1.5.5:generate-metadata (default) @ adam-shade-spark2_2.11 --- [INFO] Discovered 1 component descriptors(s) [INFO] [INFO] --- scoverage-maven-plugin:1.1.1:post-compile (default-cli) @ adam-shade-spark2_2.11 --- [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-shade-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/src/test/resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-shade-spark2_2.11 --- [INFO] No sources to compile [INFO] [INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-shade-spark2_2.11 --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-shade-spark2_2.11 --- [INFO] No tests to run. [INFO] [INFO] <<< scoverage-maven-plugin:1.1.1:report (default-cli) < [scoverage]test @ adam-shade-spark2_2.11 <<< [INFO] [INFO] --- scoverage-maven-plugin:1.1.1:report (default-cli) @ adam-shade-spark2_2.11 --- [INFO] [scoverage] Generating cobertura XML report... [INFO] [scoverage] Generating scoverage XML report... [INFO] [scoverage] Generating scoverage HTML report... [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building ADAM_2.11: Avro-to-Dataset codegen utils 0.29.0-SNAPSHOT [INFO] ------------------------------------------------------------------------ [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-codegen-spark2_2.11 --- [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-codegen-spark2_2.11 --- [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-codegen-spark2_2.11 --- [INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/src/main/scala added. [INFO] [INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-codegen-spark2_2.11 --- [INFO] Modified 0 of 4 .scala files [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-codegen-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/src/main/resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-codegen-spark2_2.11 --- [INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/src/main/scala:-1: info: compiling [INFO] Compiling 4 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/target/2.11.12/classes at 1568827013615 [INFO] prepare-compile in 0 s [INFO] compile in 5 s [INFO] [INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-codegen-spark2_2.11 --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-codegen-spark2_2.11 --- [INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/src/test/scala added. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-codegen-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/src/test/resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-codegen-spark2_2.11 --- [INFO] No sources to compile [INFO] [INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-codegen-spark2_2.11 --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-codegen-spark2_2.11 --- [INFO] Tests are skipped. [INFO] [INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-codegen-spark2_2.11 --- Discovery starting. Discovery completed in 126 milliseconds. Run starting. Expected test count is: 0 DiscoverySuite: Run completed in 171 milliseconds. Total number of tests run: 0 Suites: completed 1, aborted 0 Tests: succeeded 0, failed 0, canceled 0, ignored 0, pending 0 No tests were executed. [INFO] [INFO] >>> scoverage-maven-plugin:1.1.1:report (default-cli) > [scoverage]test @ adam-codegen-spark2_2.11 >>> [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-codegen-spark2_2.11 --- [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-codegen-spark2_2.11 --- [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-codegen-spark2_2.11 --- [INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/src/main/scala added. [INFO] [INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-codegen-spark2_2.11 --- [INFO] Modified 0 of 4 .scala files [INFO] [INFO] --- scoverage-maven-plugin:1.1.1:pre-compile (default-cli) @ adam-codegen-spark2_2.11 --- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-codegen-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/src/main/resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-codegen-spark2_2.11 --- [INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/src/main/scala:-1: info: compiling [INFO] Compiling 4 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/target/2.11.12/scoverage-classes at 1568827021181 [INFO] [info] Cleaning datadir [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/target/scoverage-data] [INFO] [info] Beginning coverage instrumentation [INFO] [info] Instrumentation completed [0 statements] [INFO] [info] Wrote instrumentation file [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/target/scoverage-data/scoverage.coverage.xml] [INFO] [info] Will write measurement data to [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/target/scoverage-data] [INFO] prepare-compile in 0 s [INFO] compile in 7 s [INFO] [INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-codegen-spark2_2.11 --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- scoverage-maven-plugin:1.1.1:post-compile (default-cli) @ adam-codegen-spark2_2.11 --- [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-codegen-spark2_2.11 --- [INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/src/test/scala added. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-codegen-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/src/test/resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-codegen-spark2_2.11 --- [INFO] No sources to compile [INFO] [INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-codegen-spark2_2.11 --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-codegen-spark2_2.11 --- [INFO] Tests are skipped. [INFO] [INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-codegen-spark2_2.11 --- Discovery starting. Discovery completed in 71 milliseconds. Run starting. Expected test count is: 0 DiscoverySuite: Run completed in 103 milliseconds. Total number of tests run: 0 Suites: completed 1, aborted 0 Tests: succeeded 0, failed 0, canceled 0, ignored 0, pending 0 No tests were executed. [INFO] [INFO] <<< scoverage-maven-plugin:1.1.1:report (default-cli) < [scoverage]test @ adam-codegen-spark2_2.11 <<< [INFO] [INFO] --- scoverage-maven-plugin:1.1.1:report (default-cli) @ adam-codegen-spark2_2.11 --- [INFO] [scoverage] Generating cobertura XML report... [INFO] [scoverage] Generating scoverage XML report... [INFO] [scoverage] Generating scoverage HTML report... [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building ADAM_2.11: Core 0.29.0-SNAPSHOT [INFO] ------------------------------------------------------------------------ Downloading: https://repo.maven.apache.org/maven2/org/bdgenomics/bdg-formats/bdg-formats/0.14.0/bdg-formats-0.14.0.pom 3/6 KB 5/6 KB 6/6 KB Downloaded: https://repo.maven.apache.org/maven2/org/bdgenomics/bdg-formats/bdg-formats/0.14.0/bdg-formats-0.14.0.pom (6 KB at 15.6 KB/sec) Downloading: https://repo.maven.apache.org/maven2/org/bdgenomics/bdg-formats/bdg-formats/0.14.0/bdg-formats-0.14.0.jar 3/179 KB 5/179 KB 8/179 KB 11/179 KB 13/179 KB 16/179 KB 19/179 KB 21/179 KB 24/179 KB 27/179 KB 29/179 KB 32/179 KB 36/179 KB 40/179 KB 44/179 KB 48/179 KB 52/179 KB 56/179 KB 60/179 KB 64/179 KB 68/179 KB 72/179 KB 76/179 KB 80/179 KB 84/179 KB 88/179 KB 92/179 KB 96/179 KB 100/179 KB 104/179 KB 108/179 KB 112/179 KB 116/179 KB 120/179 KB 124/179 KB 128/179 KB 132/179 KB 136/179 KB 140/179 KB 144/179 KB 148/179 KB 152/179 KB 156/179 KB 160/179 KB 164/179 KB 168/179 KB 172/179 KB 176/179 KB 179/179 KB Downloaded: https://repo.maven.apache.org/maven2/org/bdgenomics/bdg-formats/bdg-formats/0.14.0/bdg-formats-0.14.0.jar (179 KB at 2969.7 KB/sec) [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-core-spark2_2.11 --- [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-core-spark2_2.11 --- [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-core-spark2_2.11 --- [INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala added. [INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/generated-sources/src/main/scala added. [INFO] [INFO] --- exec-maven-plugin:1.5.0:java (generate-scala-products) @ adam-core-spark2_2.11 --- SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder". SLF4J: Defaulting to no-operation (NOP) logger implementation SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details. [INFO] [INFO] --- exec-maven-plugin:1.5.0:java (generate-scala-projection-fields) @ adam-core-spark2_2.11 --- SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder". SLF4J: Defaulting to no-operation (NOP) logger implementation SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details. [INFO] [INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-core-spark2_2.11 --- [INFO] Modified 2 of 203 .scala files [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-core-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-core-spark2_2.11 --- [INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/java:-1: info: compiling [INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala:-1: info: compiling [INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/generated-sources/src/main/scala:-1: info: compiling [INFO] Compiling 139 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/2.11.12/classes at 1568827039103 [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicDataset.scala:3099: warning: no valid targets for annotation on value uTag - it is discarded unused. You may specify targets with meta-annotations, e.g. @(transient @getter) [WARNING] @transient val uTag: TypeTag[U] [WARNING] ^ [WARNING] warning: there were 89 deprecation warnings; re-run with -deprecation for details [WARNING] warning: there were 5 feature warnings; re-run with -feature for details [WARNING] three warnings found [INFO] prepare-compile in 0 s [INFO] compile in 36 s [INFO] [INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-core-spark2_2.11 --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 6 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/2.11.12/classes [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-core-spark2_2.11 --- [INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala added. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-core-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 152 resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-core-spark2_2.11 --- [INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala:-1: info: compiling [INFO] Compiling 70 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/2.11.12/test-classes at 1568827078516 [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/algorithms/consensus/NormalizationUtilsSuite.scala:59: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development. [WARNING] .build() [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/algorithms/consensus/NormalizationUtilsSuite.scala:61: warning: method richRecordToRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development. [WARNING] val new_cigar = NormalizationUtils.leftAlignIndel(read) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/algorithms/consensus/NormalizationUtilsSuite.scala:66: warning: method richRecordToRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development. [WARNING] assert(RichAlignmentRecord(read).samtoolsCigar.getReadLength === new_cigar.getReadLength) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/SAMRecordConverterSuite.scala:54: warning: method getNotPrimaryAlignmentFlag in class SAMRecord is deprecated: see corresponding Javadoc for more information. [WARNING] assert(!testAlignmentRecord.getPrimaryAlignment === testSAMRecord.getNotPrimaryAlignmentFlag) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/SAMRecordConverterSuite.scala:89: warning: method getNotPrimaryAlignmentFlag in class SAMRecord is deprecated: see corresponding Javadoc for more information. [WARNING] assert(!testAlignmentRecord.getPrimaryAlignment === testSAMRecord.getNotPrimaryAlignmentFlag) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:53: warning: method extractDictionary in object SAMSequenceDictionaryExtractor is deprecated: see corresponding Javadoc for more information. [WARNING] SequenceDictionary(SAMSequenceDictionaryExtractor.extractDictionary(new File(path))) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/CoverageSuite.scala:37: warning: variable start in class Feature is deprecated: see corresponding Javadoc for more information. [WARNING] assert(coverageAfterConversion.start == featureToConvert.start) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/CoverageSuite.scala:38: warning: variable end in class Feature is deprecated: see corresponding Javadoc for more information. [WARNING] assert(coverageAfterConversion.end == featureToConvert.end) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/CoverageSuite.scala:40: warning: variable score in class Feature is deprecated: see corresponding Javadoc for more information. [WARNING] assert(coverageAfterConversion.count == featureToConvert.score) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/CoverageSuite.scala:57: warning: variable start in class Feature is deprecated: see corresponding Javadoc for more information. [WARNING] assert(coverageAfterConversion.start == featureToConvert.start) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/CoverageSuite.scala:58: warning: variable end in class Feature is deprecated: see corresponding Javadoc for more information. [WARNING] assert(coverageAfterConversion.end == featureToConvert.end) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/CoverageSuite.scala:60: warning: variable score in class Feature is deprecated: see corresponding Javadoc for more information. [WARNING] assert(coverageAfterConversion.count == featureToConvert.score) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/CoverageSuite.scala:61: warning: variable sampleId in class Feature is deprecated: see corresponding Javadoc for more information. [WARNING] assert(coverageAfterConversion.optSampleId == Some(featureToConvert.sampleId)) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/MdTagSuite.scala:194: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development. [WARNING] assert(read.mdTag.get.end === read.getEnd) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/MdTagSuite.scala:475: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development. [WARNING] val tag = read.mdTag.get [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/MdTagSuite.scala:482: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development. [WARNING] assert(tag.getReference(read) === "AAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGGGGAAAAAAAAAAGGGGGGGGGGAAAAAAAAAAA") [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/MdTagSuite.scala:495: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development. [WARNING] val tag = read.mdTag.get [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/MdTagSuite.scala:496: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development. [WARNING] assert(tag.getReference(read, withGaps = true) === "AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGGGGAAAAAAAAAAA") [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/MdTagSuite.scala:510: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development. [WARNING] val newTag = MdTag.moveAlignment(read, newCigar) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/MdTagSuite.scala:526: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development. [WARNING] val newTag = MdTag.moveAlignment(read, newCigar, "AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA", 100L) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/MdTagSuite.scala:544: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development. [WARNING] val newTag = MdTag.moveAlignment(read, newCigar, "GGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA", 100L) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/MdTagSuite.scala:562: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development. [WARNING] val newTag = MdTag.moveAlignment(read, newCigar, "AAAAAAAAAAGGGGGGGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA", 100L) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/MdTagSuite.scala:580: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development. [WARNING] val newTag = MdTag.moveAlignment(read, newCigar, "AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA", 100L) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/SequenceDictionarySuite.scala:48: warning: method extractDictionary in object SAMSequenceDictionaryExtractor is deprecated: see corresponding Javadoc for more information. [WARNING] val ssd = SAMSequenceDictionaryExtractor.extractDictionary(new File(path)) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/SequenceDictionarySuite.scala:62: warning: method extractDictionary in object SAMSequenceDictionaryExtractor is deprecated: see corresponding Javadoc for more information. [WARNING] val ssd = SAMSequenceDictionaryExtractor.extractDictionary(new File(path)) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/SequenceDictionarySuite.scala:75: warning: method extractDictionary in object SAMSequenceDictionaryExtractor is deprecated: see corresponding Javadoc for more information. [WARNING] val ssd = SAMSequenceDictionaryExtractor.extractDictionary(new File(path)) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/ADAMContextSuite.scala:832: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val df = SQLContext.getOrCreate(sc).read.parquet(outputDir) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/ADAMContextSuite.scala:845: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val df = SQLContext.getOrCreate(sc).read.parquet(outputDir) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/ADAMContextSuite.scala:857: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val df = SQLContext.getOrCreate(sc).read.parquet(outputDir) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/ADAMContextSuite.scala:870: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val df = SQLContext.getOrCreate(sc).read.parquet(outputDir) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/ADAMContextSuite.scala:883: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val df = SQLContext.getOrCreate(sc).read.parquet(outputDir) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/ADAMContextSuite.scala:896: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val df = SQLContext.getOrCreate(sc).read.parquet(outputDir) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/ADAMContextSuite.scala:907: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val df = SQLContext.getOrCreate(sc).read.parquet(outputDir) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/ADAMContextSuite.scala:918: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val df = SQLContext.getOrCreate(sc).read.parquet(outputDir) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/ADAMContextSuite.scala:929: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val df = SQLContext.getOrCreate(sc).read.parquet(outputDir) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/ADAMContextSuite.scala:943: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val df = SQLContext.getOrCreate(sc).read.parquet(outputDir) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/ADAMContextSuite.scala:956: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val df = SQLContext.getOrCreate(sc).read.parquet(outputDir) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/ADAMContextSuite.scala:968: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val df = SQLContext.getOrCreate(sc).read.parquet(outputDir) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/ADAMContextSuite.scala:980: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val df = SQLContext.getOrCreate(sc).read.parquet(outputDir) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/ADAMContextSuite.scala:993: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val df = SQLContext.getOrCreate(sc).read.parquet(outputDir) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/ADAMContextSuite.scala:1005: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val df = SQLContext.getOrCreate(sc).read.parquet(outputDir) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/ADAMContextSuite.scala:1018: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val df = SQLContext.getOrCreate(sc).read.parquet(outputDir) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/ADAMContextSuite.scala:1031: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val df = SQLContext.getOrCreate(sc).read.parquet(outputDir) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/ADAMContextSuite.scala:1044: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val df = SQLContext.getOrCreate(sc).read.parquet(outputDir) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/feature/CoverageDatasetSuite.scala:307: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val sqlContext = SQLContext.getOrCreate(sc) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/feature/CoverageDatasetSuite.scala:338: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val sqlContext = SQLContext.getOrCreate(sc) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/feature/CoverageDatasetSuite.scala:369: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val sqlContext = SQLContext.getOrCreate(sc) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/feature/CoverageDatasetSuite.scala:400: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val sqlContext = SQLContext.getOrCreate(sc) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/feature/CoverageDatasetSuite.scala:431: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val sqlContext = SQLContext.getOrCreate(sc) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/feature/CoverageDatasetSuite.scala:462: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val sqlContext = SQLContext.getOrCreate(sc) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/feature/FeatureDatasetSuite.scala:1022: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val sqlContext = SQLContext.getOrCreate(sc) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/feature/FeatureDatasetSuite.scala:1053: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val sqlContext = SQLContext.getOrCreate(sc) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/feature/FeatureDatasetSuite.scala:1081: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val sqlContext = SQLContext.getOrCreate(sc) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/feature/FeatureDatasetSuite.scala:1112: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val sqlContext = SQLContext.getOrCreate(sc) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/feature/FeatureDatasetSuite.scala:1143: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val sqlContext = SQLContext.getOrCreate(sc) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/feature/FeatureDatasetSuite.scala:1174: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val sqlContext = SQLContext.getOrCreate(sc) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/fragment/FragmentDatasetSuite.scala:400: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val sqlContext = SQLContext.getOrCreate(sc) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/fragment/FragmentDatasetSuite.scala:431: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val sqlContext = SQLContext.getOrCreate(sc) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/fragment/FragmentDatasetSuite.scala:459: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val sqlContext = SQLContext.getOrCreate(sc) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/fragment/FragmentDatasetSuite.scala:490: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val sqlContext = SQLContext.getOrCreate(sc) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/fragment/FragmentDatasetSuite.scala:521: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val sqlContext = SQLContext.getOrCreate(sc) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/fragment/FragmentDatasetSuite.scala:552: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val sqlContext = SQLContext.getOrCreate(sc) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordDatasetSuite.scala:1438: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val sqlContext = SQLContext.getOrCreate(sc) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordDatasetSuite.scala:1460: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val sqlContext = SQLContext.getOrCreate(sc) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordDatasetSuite.scala:1491: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val sqlContext = SQLContext.getOrCreate(sc) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordDatasetSuite.scala:1519: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val sqlContext = SQLContext.getOrCreate(sc) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordDatasetSuite.scala:1550: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val sqlContext = SQLContext.getOrCreate(sc) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordDatasetSuite.scala:1581: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val sqlContext = SQLContext.getOrCreate(sc) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordDatasetSuite.scala:1613: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val sqlContext = SQLContext.getOrCreate(sc) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTargetSuite.scala:83: warning: method richRecordToRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development. [WARNING] assert(TargetOrdering.contains(targets.head, read)) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTargetSuite.scala:191: warning: method richRecordToRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development. [WARNING] if (read.getStart < 105) { [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTargetSuite.scala:194: warning: method richRecordToRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development. [WARNING] assert(targets.head.readRange.start === read.getStart) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTargetSuite.scala:195: warning: method richRecordToRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development. [WARNING] assert(targets.head.readRange.end === read.getEnd) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTargetSuite.scala:196: warning: method richRecordToRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development. [WARNING] assert(check_indel(targets.head, read)) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:406: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val sqlContext = SQLContext.getOrCreate(sc) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:437: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val sqlContext = SQLContext.getOrCreate(sc) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:465: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val sqlContext = SQLContext.getOrCreate(sc) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:496: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val sqlContext = SQLContext.getOrCreate(sc) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:527: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val sqlContext = SQLContext.getOrCreate(sc) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:558: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val sqlContext = SQLContext.getOrCreate(sc) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:697: warning: variable end in class Genotype is deprecated: see corresponding Javadoc for more information. [WARNING] assert(first.end === 16157602L) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:698: warning: variable end in class Variant is deprecated: see corresponding Javadoc for more information. [WARNING] assert(first.variant.end === 16157602L) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:698: warning: variable variant in class Genotype is deprecated: see corresponding Javadoc for more information. [WARNING] assert(first.variant.end === 16157602L) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:699: warning: variable annotation in class Variant is deprecated: see corresponding Javadoc for more information. [WARNING] assert(first.variant.annotation === null) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:699: warning: variable variant in class Genotype is deprecated: see corresponding Javadoc for more information. [WARNING] assert(first.variant.annotation === null) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:710: warning: variable end in class Genotype is deprecated: see corresponding Javadoc for more information. [WARNING] assert(firstVcfGenotype.end === 16157602L) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:712: warning: variable end in class Variant is deprecated: see corresponding Javadoc for more information. [WARNING] assert(firstVcfGenotype.variant.end === 16157602L) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:712: warning: variable variant in class Genotype is deprecated: see corresponding Javadoc for more information. [WARNING] assert(firstVcfGenotype.variant.end === 16157602L) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:714: warning: variable annotation in class Variant is deprecated: see corresponding Javadoc for more information. [WARNING] assert(firstVcfGenotype.variant.annotation === null) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:714: warning: variable variant in class Genotype is deprecated: see corresponding Javadoc for more information. [WARNING] assert(firstVcfGenotype.variant.annotation === null) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:745: warning: variable end in class Genotype is deprecated: see corresponding Javadoc for more information. [WARNING] assert(first.end === 16157602L) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:746: warning: variable end in class Variant is deprecated: see corresponding Javadoc for more information. [WARNING] assert(first.variant.end === 16157602L) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:746: warning: variable variant in class Genotype is deprecated: see corresponding Javadoc for more information. [WARNING] assert(first.variant.end === 16157602L) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:747: warning: variable attributes in class VariantAnnotation is deprecated: see corresponding Javadoc for more information. [WARNING] assert(first.variant.annotation.attributes.get("END") === "16157602") [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:747: warning: variable annotation in class Variant is deprecated: see corresponding Javadoc for more information. [WARNING] assert(first.variant.annotation.attributes.get("END") === "16157602") [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:747: warning: variable variant in class Genotype is deprecated: see corresponding Javadoc for more information. [WARNING] assert(first.variant.annotation.attributes.get("END") === "16157602") [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:758: warning: variable end in class Genotype is deprecated: see corresponding Javadoc for more information. [WARNING] assert(firstVcfGenotype.end === 16157602L) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:759: warning: variable end in class Variant is deprecated: see corresponding Javadoc for more information. [WARNING] assert(firstVcfGenotype.variant.end === 16157602L) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:759: warning: variable variant in class Genotype is deprecated: see corresponding Javadoc for more information. [WARNING] assert(firstVcfGenotype.variant.end === 16157602L) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:760: warning: variable attributes in class VariantAnnotation is deprecated: see corresponding Javadoc for more information. [WARNING] assert(firstVcfGenotype.variant.annotation.attributes.get("END") === "16157602") [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:760: warning: variable annotation in class Variant is deprecated: see corresponding Javadoc for more information. [WARNING] assert(firstVcfGenotype.variant.annotation.attributes.get("END") === "16157602") [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:760: warning: variable variant in class Genotype is deprecated: see corresponding Javadoc for more information. [WARNING] assert(firstVcfGenotype.variant.annotation.attributes.get("END") === "16157602") [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/VariantContextDatasetSuite.scala:181: warning: variable start in class Genotype is deprecated: see corresponding Javadoc for more information. [WARNING] val filtered = vcs.toGenotypes().rdd.filter(_.start == 66631043) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/VariantDatasetSuite.scala:422: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val sqlContext = SQLContext.getOrCreate(sc) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/VariantDatasetSuite.scala:453: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val sqlContext = SQLContext.getOrCreate(sc) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/VariantDatasetSuite.scala:481: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val sqlContext = SQLContext.getOrCreate(sc) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/VariantDatasetSuite.scala:512: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val sqlContext = SQLContext.getOrCreate(sc) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/VariantDatasetSuite.scala:543: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val sqlContext = SQLContext.getOrCreate(sc) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/VariantDatasetSuite.scala:574: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead [WARNING] val sqlContext = SQLContext.getOrCreate(sc) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichAlignmentRecordSuite.scala:31: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development. [WARNING] assert(recordWithoutClipping.unclippedStart == 42L) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichAlignmentRecordSuite.scala:32: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development. [WARNING] assert(recordWithClipping.unclippedStart == 40L) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichAlignmentRecordSuite.scala:33: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development. [WARNING] assert(recordWithHardClipping.unclippedStart == 37L) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichAlignmentRecordSuite.scala:41: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development. [WARNING] assert(recordWithoutClipping.unclippedEnd == 20L) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichAlignmentRecordSuite.scala:42: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development. [WARNING] assert(recordWithClipping.unclippedEnd == 20L) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichAlignmentRecordSuite.scala:43: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development. [WARNING] assert(recordWithHardClipping.unclippedEnd == 20L) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichAlignmentRecordSuite.scala:49: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development. [WARNING] assert(rec.tags.size === 2) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichAlignmentRecordSuite.scala:50: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development. [WARNING] assert(rec.tags(0) === Attribute("XX", TagType.Integer, 3)) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichAlignmentRecordSuite.scala:51: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development. [WARNING] assert(rec.tags(1) === Attribute("YY", TagType.String, "foo")) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichAlignmentRecordSuite.scala:57: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development. [WARNING] val overlaps = unmappedRead.overlapsReferencePosition(ReferencePosition("chr1", 10)) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichCigarSuite.scala:34: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development. [WARNING] val newCigar = RichCigar(new Cigar(read.samtoolsCigar.getCigarElements)).moveLeft(1) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichCigarSuite.scala:37: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development. [WARNING] assert(newCigar2.cigar.getReadLength == read.samtoolsCigar.getReadLength) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichCigarSuite.scala:49: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development. [WARNING] val newCigar = RichCigar(new Cigar(read.samtoolsCigar.getCigarElements)).moveLeft(1) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichCigarSuite.scala:52: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development. [WARNING] assert(newCigar2.cigar.getReadLength == read.samtoolsCigar.getReadLength) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichCigarSuite.scala:64: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development. [WARNING] val newCigar = RichCigar(new Cigar(read.samtoolsCigar.getCigarElements)).moveLeft(1) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichCigarSuite.scala:66: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development. [WARNING] assert(newCigar.cigar.getReadLength == read.samtoolsCigar.getReadLength) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichCigarSuite.scala:78: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development. [WARNING] val newCigar = RichCigar(new Cigar(read.samtoolsCigar.getCigarElements)).moveLeft(1) [WARNING] ^ [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichCigarSuite.scala:80: warning: method recordToRichRecord in object RichAlignmentRecord is deprecated: Use explicit conversion wherever possible in new development. [WARNING] assert(newCigar.cigar.getReadLength == read.samtoolsCigar.getReadLength) [WARNING] ^ [WARNING] 127 warnings found [INFO] prepare-compile in 0 s [INFO] compile in 39 s [INFO] [INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-core-spark2_2.11 --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-core-spark2_2.11 --- [INFO] Tests are skipped. [INFO] [INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-core-spark2_2.11 --- Discovery starting. Discovery completed in 2 seconds, 517 milliseconds. Run starting. Expected test count is: 1175 RepairPartitionsSuite: - don't pull from the first partition - properly handle pulling from an empty iterator - gets a single read from the partition if there are no other reads in the pair - gets all the reads from a pair from the start of a partition - properly handle dropping from an empty iterator - don't drop from the first partition - drop a single read from the partition if there are no other reads in the pair - drops all the reads from a pair from the start of a partition - only append to the first partition - drop a single read from the partition and append read when in the middle - drop reads from the start and don't append when in the last partition - can't have more records than number of partitions - unroll array for broadcast 2019-09-18 10:18:41 WARN Utils:66 - Your hostname, research-jenkins-worker-09 resolves to a loopback address: 127.0.1.1; using 192.168.10.31 instead (on interface enp4s0f0) 2019-09-18 10:18:41 WARN Utils:66 - Set SPARK_LOCAL_IP if you need to bind to another address 2019-09-18 10:18:41 WARN NativeCodeLoader:62 - Unable to load native-hadoop library for your platform... using builtin-java classes where applicable - move pairs around an rdd FlagStatSuite: - Standard FlagStat test ModPartitionerSuite: - report number of partitions correctly - partition a number that is lower than the number of partitions and positive - partition a number that is greater than the number of partitions and positive - partition a number that is lower than the number of partitions and negative - partition a number that is greater than the number of partitions and negative - fire an exception if input is not an integer TwoBitFileSuite: - correctly read sequence from .2bit file - correctly return masked sequences from .2bit file - correctly return Ns from .2bit file - correctly calculates sequence dictionary NonoverlappingRegionsSuite: - alternating returns an alternating seq of items - Single region returns itself - Two adjacent regions will be merged - Nonoverlapping regions will all be returned - Many overlapping regions will all be merged - ADAMRecords return proper references ReferencePositionSuite: - create reference position from mapped read - create reference position from variant - create reference position from genotype - create reference position from variant starting at vcf 0 - create reference position from genotype starting at vcf 0 ConsensusGeneratorFromReadsSuite: - checking search for consensus list for artificial reads FragmentConverterSuite: - build a fragment collector and convert to a read - if a fragment isn't associated with a contig, don't get a fragment collector - convert an rdd of discontinuous fragments, all from the same contig - convert an rdd of contiguous fragments, all from the same contig - convert an rdd of varied fragments from multiple contigs FileMergerSuite: - cannot write both empty gzip block and cram eof - buffer size must be non-negative AlignmentRecordDatasetSuite: - sorting reads - unmapped reads go at the end when sorting - coverage does not fail on unmapped reads 2019-09-18 10:18:53 WARN Utils:66 - Truncated the string representation of a plan since it was too large. This behavior can be adjusted by setting 'spark.debug.maxToStringFields' in SparkEnv.conf. - computes coverage - computes coverage with multiple samples - merges adjacent records with equal coverage values - sorting reads by reference index - round trip from ADAM to SAM and back to ADAM produces equivalent Read values - round trip with single CRAM file produces equivalent Read values - round trip with sharded CRAM file produces equivalent Read values - SAM conversion sets read mapped flag properly - load long FASTQ reads - load FASTQ with no bases - convert malformed FASTQ (no quality scores) => SAM => well-formed FASTQ => SAM - round trip from ADAM to FASTQ and back to ADAM produces equivalent Read values - round trip from ADAM to paired-FASTQ and back to ADAM produces equivalent Read values - writing a small file with tags should produce the expected result - writing a small sorted file as SAM should produce the expected result - writing unordered sam from unordered sam - writing ordered sam from unordered sam - write single sam file back - write single bam file back - saveAsParquet with save args, sequence dictionary, and read group dictionary - load parquet to sql, save, re-read from avro - load from sam, save as partitioned parquet, and re-read from partitioned parquet - save as SAM format - save as sorted SAM format - save as BAM format - save as sorted BAM format - save as FASTQ format - save as ADAM parquet format - saveAsSam SAM format - saveAsSam SAM format single file - saveAsSam sorted SAM format single file - saveAsSam BAM format - saveAsSam BAM format single file - saveAsSam sorted BAM format single file - saveAsFastq - saveAsFastq as single file - saveAsFastq with original base qualities - saveAsFastq sorted by read name - saveAsFastq sorted by read name with original base qualities 2019-09-18 10:19:22 WARN RDDBoundAlignmentRecordDataset:190 - Found 20 read names that don't occur exactly twice: 1x: 20 Samples: simread:1:237728409:true simread:1:195211965:false simread:1:163841413:false simread:1:231911906:false simread:1:26472783:false simread:1:165341382:true simread:1:240344442:true simread:1:50683371:false simread:1:240997787:true simread:1:14397233:false simread:1:207027738:true simread:1:20101800:true simread:1:101556378:false simread:1:37577445:false simread:1:189606653:true simread:1:5469106:true simread:1:186794283:true simread:1:89554252:false simread:1:153978724:false simread:1:169801933:true - saveAsFastq paired FASTQ 2019-09-18 10:19:23 WARN RDDBoundAlignmentRecordDataset:190 - Found 20 read names that don't occur exactly twice: 1x: 20 Samples: simread:1:237728409:true simread:1:195211965:false simread:1:163841413:false simread:1:231911906:false simread:1:26472783:false simread:1:165341382:true simread:1:240344442:true simread:1:50683371:false simread:1:240997787:true simread:1:14397233:false simread:1:207027738:true simread:1:20101800:true simread:1:101556378:false simread:1:37577445:false simread:1:189606653:true simread:1:5469106:true simread:1:186794283:true simread:1:89554252:false simread:1:153978724:false simread:1:169801933:true - saveAsPairedFastq 2019-09-18 10:19:24 WARN RDDBoundAlignmentRecordDataset:190 - Found 20 read names that don't occur exactly twice: 1x: 20 Samples: simread:1:237728409:true simread:1:195211965:false simread:1:163841413:false simread:1:231911906:false simread:1:26472783:false simread:1:165341382:true simread:1:240344442:true simread:1:50683371:false simread:1:240997787:true simread:1:14397233:false simread:1:207027738:true simread:1:20101800:true simread:1:101556378:false simread:1:37577445:false simread:1:189606653:true simread:1:5469106:true simread:1:186794283:true simread:1:89554252:false simread:1:153978724:false simread:1:169801933:true - saveAsPairedFastq as single files - don't lose any reads when piping as SAM 2019-09-18 10:19:35 WARN OutFormatterRunner:190 - Piped command List(sleep, 10) timed out after 5 seconds. 2019-09-18 10:19:35 WARN OutFormatterRunner:190 - Piped command List(sleep, 10) timed out after 5 seconds. - lose all records when a command times out - lose no records without a timeout 2019-09-18 10:19:56 WARN OutFormatterRunner:190 - Piped command List(python, /tmp/adamTestMvnQOhk7M0/spark-eee0584c-e248-4efa-839e-f16a29fd7fd0/userFiles-5022a763-e3d8-4fd9-aacd-bdd2b59aa71c/timeout.py) timed out after 5 seconds. 2019-09-18 10:19:56 WARN OutFormatterRunner:190 - Piped command List(python, /tmp/adamTestMvnQOhk7M0/spark-eee0584c-e248-4efa-839e-f16a29fd7fd0/userFiles-5022a763-e3d8-4fd9-aacd-bdd2b59aa71c/timeout.py) timed out after 5 seconds. - lose some records when a command times out - don't lose any reads when piping as SAM using java pipe - don't lose any reads when piping as BAM - don't lose any reads when piping fastq to sam - can properly set environment variables inside of a pipe - read vcf from alignment record pipe !!! IGNORED !!! - use broadcast join to pull down reads mapped to targets - use broadcast join against to pull down reads mapped to targets - use right outer broadcast join to pull down reads mapped to targets - use right outer broadcast join against to pull down reads mapped to targets - use shuffle join with feature spanning partitions - use shuffle join to pull down reads mapped to targets - use shuffle join with flankSize to pull down reads mapped close to targets - use right outer shuffle join to pull down reads mapped to targets - use left outer shuffle join to pull down reads mapped to targets - use full outer shuffle join to pull down reads mapped to targets - use shuffle join with group by to pull down reads mapped to targets - use right outer shuffle join with group by to pull down reads mapped to targets - cannot provide empty quality score bins - cannot provide bins with a gap - cannot provide overlapping bins - binning quality scores in reads succeeds even if reads have no quality scores - bin quality scores in reads - union two read files together - test k-mer counter - test dataset based k-mer counter - transform reads to slice genomic dataset - transform reads to coverage genomic dataset - transform reads to feature genomic dataset - transform reads to fragment genomic dataset - transform reads to genotype genomic dataset loading /tmp/adamTestMvnQOhk7M0/TempSuite517077388172118812.adam as parquet into RDD... loading /tmp/adamTestMvnQOhk7M0/TempSuite5596691951353999591.adam as parquet into RDD... - transform reads to variant genomic dataset - cannot have a null processing step ID - convert a processing description to htsjdk - GenomicDataset.sort does not fail on unmapped reads - GenomicDataset.sortLexicographically does not fail on unmapped reads - left normalize indels - running base recalibration with downsampling doesn't drop reads - filter RDD bound alignments by MAPQ - filter dataset bound alignments by MAPQ - filter RDD bound unaligned alignments - filter dataset bound unaligned alignments - filter RDD bound unpaired alignments - filter dataset bound unpaired alignments - filter RDD bound duplicate alignments - filter dataset bound duplicate alignments - filter RDD bound alignments to primary alignments - filter dataset bound alignments to primary alignments - filter RDD bound alignments to read group - filter dataset bound alignments to read group - filter RDD bound alignments to read groups - filter dataset bound alignments to read groups - filter RDD bound alignments to sample - filter dataset bound alignments to sample - filter RDD bound alignments to samples - filter dataset bound alignments to samples - sort by read name - transform dataset via java API - convert alignments to reads SingleReadBucketSuite: - convert unmapped pair to fragment - convert proper pair to fragment - convert read pair to fragment with first of pair chimeric read RecalibrationTableSuite: - look up quality scores in table FlankSlicesSuite: - don't put flanks on non-adjacent slices - put flanks on adjacent slices InterleavedFastqInputFormatSuite: - interleaved FASTQ hadoop reader: interleaved_fastq_sample1.ifq->interleaved_fastq_sample1.ifq.output - interleaved FASTQ hadoop reader: interleaved_fastq_sample2.ifq->interleaved_fastq_sample2.ifq.output - interleaved FASTQ hadoop reader: interleaved_fastq_sample3.ifq->interleaved_fastq_sample3.ifq.output - interleaved FASTQ hadoop reader: interleaved_fastq_sample4.ifq->interleaved_fastq_sample4.ifq.output - interleaved FASTQ hadoop reader: interleaved_fastq_sample5.ifq->interleaved_fastq_sample5.ifq.output TreeRegionJoinSuite: - run a join between data on a single contig ReferenceRegionSuite: - cannot create an empty predicate - parse empty string throws IllegalArgumentException - parse contigName only string into reference regions - parse to end strings into reference regions - parse string into reference regions - contains(: ReferenceRegion) - contains(: ReferencePosition) - merge - overlaps and covers - overlapsBy and coversBy - distance(: ReferenceRegion) - distance(: ReferencePosition) - unstrandedDistance - subtract fails on non-overlapping and non-covering regions - subtract - create region from unmapped read fails - create region from read with null alignment positions fails - create stranded region from unmapped read fails - create stranded region from read with null alignment positions fails - create stranded region from read with null alignment strand fails - create stranded region from read on forward strand - create stranded region from read on reverse strand - create region from mapped read contains read start and end - validate that adjacent regions can be merged - validate that non-adjacent regions cannot be merged - validate that nearby regions can be merged - validate that non-nearby regions cannot be merged - compute convex hull of two sets - region name is sanitized when creating region from read - intersection fails on non-overlapping regions - intersection fails when minOverlap is not met - compute intersection - overlap tests for oriented reference region - check the width of a reference region - make a reference region for a variant or genotype - make a reference region for a variant or genotype starting at VCF 0 - uniformly pad a reference region - uniformly pad a reference region into negative coordinate space, ensure non negative start - unevenly pad a reference region - unevenly pad a reference region into negative coordinate space, ensure non negative start - can build an open ended reference region - can build an open ended reference region with strand - can build a reference region with an open start position - can build a reference region with an open start position with strand - can build a reference region that covers the entirety of a contig - can build a reference region that covers the entirety of a contig with strand - convert a genotype and then get the reference region - create region from feature with null alignment positions fails - create stranded region from feature with null alignment positions fails - create stranded region from feature with null alignment strand fails - create stranded region from feature on forward strand - create stranded region from feature on reverse strand AlignmentRecordConverterSuite: - testing the fields in a converted ADAM Read - converting a read with null quality is OK - convert a read to fastq - reverse complement reads when converting to fastq - converting to fastq with unmapped reads where read reverse complemented flag (Ox10) was NOT set - converting to fastq with unmapped reads where reverse complemented flag (0x10) was set - converting a fragment with no alignments should yield unaligned reads - converting a fragment with alignments should restore the alignments - read negative strand is propagated even when not mapped CoverageDatasetSuite: - correctly saves coverage - can read a bed file to coverage - correctly filters coverage with predicate - keeps sample metadata - can read a bed file with multiple samples to coverage - correctly flatmaps coverage without aggregated bins - correctly flatmaps coverage with aggregated bins - collapses coverage records in one partition - approximately collapses coverage records in multiple partitions 2019-09-18 10:20:52 WARN DatasetBoundSliceDataset:190 - Saving directly as Parquet from SQL. Options other than compression codec are ignored. - transform coverage to slice genomic dataset - transform coverage to feature genomic dataset - transform coverage to fragment genomic dataset - transform coverage to read genomic dataset - transform coverage to genotype genomic dataset - transform coverage to variant genomic dataset - transform coverage to variant context genomic dataset - copy coverage rdd - copy coverage dataset - copy coverage rdd without sequence dictionary - copy coverage dataset without sequence dictionary - transform dataset via java API RecalibratorSuite: - don't replace quality if quality was null - if no covariates, return alignment - skip recalibration if base is below quality threshold - recalibrate changed bases above quality threshold SliceDatasetSuite: - create a new slice genomic dataset - create a new slice genomic dataset with sequence dictionary - merge slices into a sequence genomic dataset - save as parquet - round trip as parquet - save as fasta - save as single file fasta - convert slices to reads - convert slices to sequences GenotypeDatasetSuite: - union two genotype genomic datasets together - round trip to parquet - round trip to partitioned parquet - use broadcast join to pull down genotypes mapped to targets - use right outer broadcast join to pull down genotypes mapped to targets - use shuffle join to pull down genotypes mapped to targets - use right outer shuffle join to pull down genotypes mapped to targets - use left outer shuffle join to pull down genotypes mapped to targets - use full outer shuffle join to pull down genotypes mapped to targets - use shuffle join with group by to pull down genotypes mapped to targets - use right outer shuffle join with group by to pull down genotypes mapped to targets - convert back to variant contexts - load parquet to sql, save, re-read from avro 2019-09-18 10:21:21 WARN DatasetBoundSliceDataset:190 - Saving directly as Parquet from SQL. Options other than compression codec are ignored. - transform genotypes to slice genomic dataset - transform genotypes to coverage genomic dataset - transform genotypes to feature genomic dataset - transform genotypes to fragment genomic dataset - transform genotypes to read genomic dataset - transform genotypes to variant genomic dataset - transform genotypes to variant context genomic dataset - loading genotypes then converting to variants yields same output as loading variants - filter RDD bound genotypes to genotype filters passed - filter dataset bound genotypes to genotype filters passed - filter RDD bound genotypes by genotype quality - filter dataset bound genotypes by genotype quality - filter RDD bound genotypes by read depth - filter dataset bound genotypes by read depth - filter RDD bound genotypes by alternate read depth - filter dataset bound genotypes by alternate read depth - filter RDD bound genotypes by reference read depth - filter dataset bound genotypes by reference read depth - filter RDD bound genotypes by sample - filter dataset bound genotypes by sample - filter RDD bound genotypes by samples - filter dataset bound genotypes by samples - filter RDD bound no call genotypes - filter dataset no call genotypes - round trip gVCF END attribute without nested variant annotations rdd bound - round trip gVCF END attribute without nested variant annotations dataset bound - round trip gVCF END attribute with nested variant annotations rdd bound - round trip gVCF END attribute with nested variant annotations dataset bound - transform dataset via java API FragmentDatasetSuite: - don't lose any reads when piping interleaved fastq to sam - don't lose any reads when piping tab5 to sam - don't lose any reads when piping tab6 to sam - use broadcast join to pull down fragments mapped to targets - use right outer broadcast join to pull down fragments mapped to targets - use shuffle join to pull down fragments mapped to targets - use right outer shuffle join to pull down fragments mapped to targets - use left outer shuffle join to pull down fragments mapped to targets - use full outer shuffle join to pull down fragments mapped to targets - use shuffle join with group by to pull down fragments mapped to targets - use right outer shuffle join with group by to pull down fragments mapped to targets - bin quality scores in fragments - union two genomic datasets of fragments together - load parquet to sql, save, re-read from avro - transform fragments to slice genomic dataset - transform fragments to coverage genomic dataset - transform fragments to feature genomic dataset - transform fragments to read genomic dataset - transform fragments to genotype genomic dataset - transform fragments to variant genomic dataset - transform fragments to variant context genomic dataset - paired read names with index sequences in read names can group into fragments - interleaved paired read names with index sequences in read names can group into fragments - interleaved paired read names with index sequences in read names as fragments - transform dataset via java API - dataset and rdd conversion to alignments are equivalent SingleFastqInputFormatSuite: - FASTQ hadoop reader: fastq_sample1.fq->single_fastq_sample1.fq.output - FASTQ hadoop reader: fastq_sample2.fq->single_fastq_sample2.fq.output - FASTQ hadoop reader: fastq_sample3.fq->single_fastq_sample3.fq.output - FASTQ hadoop reader: fastq_sample4.fq->single_fastq_sample4.fq.output VariantContextDatasetSuite: - load a gvcf with a missing info field set to . - union two variant context genomic datasets together - can write, then read in .vcf file - can write as a single file via simple saveAsVcf method, then read in .vcf file - can write as a single file via full saveAsVcf method, then read in .vcf file - transform a vcf file with bad header - read a vcf file with multi-allelic variants to split - support VCFs with +Inf/-Inf float values - support VCFs with `nan` instead of `NaN` float values - don't lose any variants when piping as VCF - pipe works with empty partitions - don't lose any non-default VCF header lines or attributes when piping as VCF - save a file sorted by contig index - save a lexicographically sorted file - save a multiallelic gvcf !!! IGNORED !!! - test metadata - save sharded bgzip vcf - save bgzip vcf as single file - can't save file with non-vcf extension - transform variant contexts to slice genomic dataset - transform variant contexts to coverage genomic dataset - transform variant contexts to feature genomic dataset - transform variant contexts to fragment genomic dataset - transform variant contexts to read genomic dataset - transform variant contexts to genotype genomic dataset - transform variant contexts to variant genomic dataset - save and reload from partitioned parquet - transform dataset via java API ConsensusSuite: - test the insertion of a consensus insertion into a reference - test the insertion of a consensus deletion into a reference - inserting empty consensus returns the reference SequenceDatasetSuite: - create a new sequence genomic dataset - create a new sequence genomic dataset with sequence dictionary - save as parquet - round trip as parquet - save as fasta - save as single file fasta - convert sequences to reads - convert sequences to slices - slice sequences to a maximum length - slice sequences shorter than maximum length - filter sequences by overlapping region - filter sequences failing to overlap region - filter sequences by overlapping regions - filter sequences failing to overlap regions - slice sequences overlapping a smaller region - slice sequences overlapping a larger region - slice sequences failing to overlap a region - slice sequences overlapping smaller regions - slice sequences overlapping larger regions - slice sequences failing to overlap regions AttributeUtilsSuite: - parseTags returns a reasonable set of tagStrings - parseTags works with NumericSequence tagType - empty string is parsed as zero tagStrings - incorrectly formatted tag throws an exception - string tag with a ':' in it is correctly parsed - oq string tag with many ':' in it is correctly parsed - oq string tag with a ',' in it is correctly parsed - if a tag is an array but doesn't define it's format, throw MarkDuplicatesSuite: - single read - reads at different positions - reads at the same position - reads at the same position with clipping - reads on reverse strand - unmapped reads - read pairs - read pairs with fragments - quality scores - read pairs that cross chromosomes - single fragment - fragments at different positions - fragments at the same position - fragments at the same position with clipping - fragments on reverse strand - unmapped fragments - read pairs as fragments - read pairs with fragments as fragments - chimeric fragments - inverse pairs - supplemental reads TranscriptEffectConverterSuite: - parse empty transcript effect - parse empty transcript effect strict validation stringency - parse invalid transcript effect - parse invalid transcript effect strict validation stringency - parse transcript effect - parse empty list VCF ANN attribute - parse empty list VCF ANN attribute strict validation stringency - parse empty string VCF ANN attribute - parse empty string VCF ANN attribute strict validation stringency - parse invalid VCF ANN attribute - parse invalid VCF ANN attribute strict validation stringency - parse VCF ANN attribute with one transcript effect - parse VCF ANN attribute with multiple transcript effects - convert to transcript effect from null VCF ANN attribute in variant context - convert to transcript effect from empty list VCF ANN attribute in variant context - convert to transcript effect from empty list VCF ANN attribute in variant context strict validation stringency - convert to transcript effect from empty string VCF ANN attribute in variant context - convert to transcript effect from empty string VCF ANN attribute in variant context strict validation stringency - convert to transcript effect from invalid VCF ANN attribute in variant context - convert to transcript effect from invalid VCF ANN attribute in variant context strict validation stringency 2019-09-18 10:22:49 WARN TranscriptEffectConverter$:190 - Could not convert VCF INFO reserved key ANN value to TranscriptEffect, caught java.lang.NumberFormatException: For input string: "not a number". - convert to transcript effect from VCF ANN attribute with invalid number in variant context lenient validation stringency 2019-09-18 10:22:49 WARN TranscriptEffectConverter$:190 - Could not convert VCF INFO reserved key ANN value to TranscriptEffect, caught java.lang.NumberFormatException: For input string: "not a number". - convert to transcript effect from VCF ANN attribute with invalid fraction in variant context lenient validation stringency - convert to transcript effect from VCF ANN attribute with invalid number in variant context strict validation stringency - convert to transcript effect from VCF ANN attribute with invalid fraction in variant context strict validation stringency - convert to transcript effect from VCF ANN attribute in variant context different alt allele - convert to transcript effect from VCF ANN attribute in variant context same alt allele - convert to transcript effect from VCF ANN attribute in variant context multiple effects same alt allele - convert transcript effect to VCF ANN attribute value - convert transcript effect with null fields to VCF ANN attribute value 2019-09-18 10:22:49 WARN TranscriptEffectConverter$:190 - Incorrect fractional value ?/2, missing numerator - convert transcript effect with incorrect fractional value to VCF ANN attribute value IndelRealignmentTargetSuite: - checking simple realignment target - creating simple target from read with deletion - creating simple target from read with insertion - joining simple realignment targets on same chr - joining simple realignment targets on different chr throws exception - creating targets from three intersecting reads, same indel - creating targets from three intersecting reads, two different indel - creating targets from two disjoint reads - creating targets for artificial reads: one-by-one - creating targets for artificial reads: all-at-once (merged) - creating indel targets for mason reads - additional indel targets taken from consensus generator NormalizationUtilsSuite: - cannot move an indel left if there are no bases to it's left - move a simple indel to farthest position left until bases run out - move a simple indel to farthest position left, past length of indel - cannot move a left normalized indel in a short tandem repeat - move an indel in a short tandem repeat - move an indel in a short tandem repeat of more than 2 bases, where shift is not an integer multiple of repeated sequence length - moving a simple read with single deletion that cannot shift - shift an indel left by 0 in a cigar - shift an indel left by 1 in a cigar - do not left align a complex read which is already left aligned ReadGroupDictionarySuite: - simple conversion to and from sam read group - sample name must be set - simple equality checks - get samples from read group dictionary - empty read group is empty - merging a dictionary with itself should work - round trip a record with all attributes set RightOuterTreeRegionJoinSuite: - Ensure same reference regions get passed together - Overlapping reference regions InnerShuffleRegionJoinSuite: - Overlapping reference regions - Multiple reference regions do not throw exception FeatureDatasetSuite: - round trip GTF format - save GTF as GFF3 format - save GTF as BED format - save GTF as IntervalList format - save GTF as NarrowPeak format - save GFF3 as GTF format - save GFF3 as BED format - save GFF3 as IntervalList format - save GFF3 as NarrowPeak format - round trip GFF3 format - ignore FASTA sequence in GFF3 file - save BED as GTF format - save BED as GFF3 format - save BED as IntervalList format - save BED as NarrowPeak format - round trip BED6 format - keeps sample metadata - round trip BED12 format - save to UCSC BED format - save IntervalList as GTF format - save IntervalList as GFF3 format - save IntervalList as BED format - save IntervalList as IntervalList format - save IntervalList as NarrowPeak format - round trip IntervalList format - save NarrowPeak as GTF format - save NarrowPeak as GFF3 format - save NarrowPeak as BED format - save NarrowPeak as IntervalList format - save NarrowPeak as NarrowPeak format - round trip NarrowPeak format - sort by reference - sort by reference and feature fields - sort gene features by reference and gene structure - sort transcript features by reference and gene structure - sort exon features by reference and gene structure - sort intron features by reference and gene structure - correctly flatmaps CoverageDataset from FeatureDataset - use broadcast join to pull down features mapped to targets - use right outer broadcast join to pull down features mapped to targets - use shuffle join to pull down features mapped to targets - use right outer shuffle join to pull down features mapped to targets - use left outer shuffle join to pull down features mapped to targets - use full outer shuffle join to pull down features mapped to targets - use shuffle join with group by to pull down features mapped to targets - use right outer shuffle join with group by to pull down features mapped to targets - union two feature rdds together - obtain sequence dictionary contig lengths from header in IntervalList format - don't lose any features when piping as BED format - don't lose any features when piping as GTF format - don't lose any features when piping as GFF3 format - don't lose any features when piping as NarrowPeak format - load parquet to sql, save, re-read from avro - load partitioned parquet to sql, save, re-read from avro 2019-09-18 10:23:26 WARN DatasetBoundSliceDataset:190 - Saving directly as Parquet from SQL. Options other than compression codec are ignored. - transform features to slice genomic dataset - transform features to coverage genomic dataset - transform features to fragment genomic dataset - transform features to read genomic dataset - transform features to genotype genomic dataset - transform features to variant genomic dataset - transform features to variant context genomic dataset - filter RDD bound features by feature type - filter dataset bound features by feature type - filter RDD bound features by feature types - filter dataset bound features by feature types - filter RDD bound features by gene - filter dataset bound features by gene - filter RDD bound features by genes - filter dataset bound features by genes - filter RDD bound features by transcript - filter dataset bound features by transcript - filter RDD bound features by transcripts - filter dataset bound features by transcripts - filter RDD bound features by exon - filter dataset bound features by exon - filter RDD bound features by exons - filter dataset bound features by exons - filter RDD bound features by score - filter dataset bound features by score - filter RDD bound features by parent - filter dataset bound features by parent - filter RDD bound features by parents - filter dataset bound features by parents - filter RDD bound features by attribute - filter dataset bound features by attribute - transform dataset via java API AlphabetSuite: - test size of a case-sensitive alphabet - test apply of a case-sensitive alphabet - test reverse complement of a case-sensitive alphabet - test exact reverse complement of a case-sensitive alphabet - test size of a case-insensitive alphabet - test apply of a case-insensitive alphabet - test reverse complement of a case-insensitive alphabet - test exact reverse complement of a case-insensitive alphabet - DNA alphabet - map unknown bases to N SortedGenomicDatasetSuite: - testing that partition and sort provide correct outputs - testing copartition maintains or adds sort - testing that we don't drop any data on the right side even though it doesn't map to a partition on the left - testing that sorted shuffleRegionJoin matches unsorted - testing that sorted fullOuterShuffleRegionJoin matches unsorted - testing that sorted rightOuterShuffleRegionJoin matches unsorted - testing that sorted leftOuterShuffleRegionJoin matches unsorted - testing that we can persist the sorted knowledge VariantContextConverterSuite: - Convert htsjdk site-only SNV to ADAM - Convert somatic htsjdk site-only SNV to ADAM - Convert htsjdk site-only CNV to ADAM - Convert htsjdk SNV w/ genotypes w/ phase information to ADAM - Convert htsjdk SNV with different variant filters to ADAM - Convert htsjdk SNV with different genotype filters to ADAM - Convert ADAM site-only SNV to htsjdk - Convert ADAM SNV w/ genotypes to htsjdk - Convert ADAM SNV w/ genotypes but bad SB to htsjdk with strict validation 2019-09-18 10:23:48 WARN VariantContextConverter:2300 - Applying annotation extraction function to {"variant": {"referenceName": "1", "start": 0, "end": 1, "names": [], "splitFromMultiAllelic": false, "referenceAllele": "A", "alternateAllele": "T", "quality": null, "filtersApplied": null, "filtersPassed": null, "filtersFailed": [], "annotation": null}, "referenceName": null, "start": null, "end": null, "variantCallingAnnotations": {"filtersApplied": null, "filtersPassed": null, "filtersFailed": [], "downsampled": null, "baseQRankSum": null, "fisherStrandBiasPValue": 3.0, "rmsMapQ": 0.0, "mapq0Reads": 5, "mqRankSum": null, "readPositionRankSum": null, "genotypePriors": [], "genotypePosteriors": [], "vqslod": null, "culprit": null, "attributes": {}}, "sampleId": "NA12878", "sampleDescription": null, "processingDescription": null, "alleles": ["REF", "ALT"], "expectedAlleleDosage": null, "referenceReadDepth": null, "alternateReadDepth": null, "readDepth": null, "minReadDepth": null, "genotypeQuality": null, "genotypeLikelihoods": [], "nonReferenceLikelihoods": [], "strandBiasComponents": [0, 2], "splitFromMultiAllelic": false, "phased": false, "phaseSetId": null, "phaseQuality": null} failed with java.lang.IllegalArgumentException: requirement failed: Illegal strand bias components length. Must be empty or 4. In: {"variant": {"referenceName": "1", "start": 0, "end": 1, "names": [], "splitFromMultiAllelic": false, "referenceAllele": "A", "alternateAllele": "T", "quality": null, "filtersApplied": null, "filtersPassed": null, "filtersFailed": [], "annotation": null}, "referenceName": null, "start": null, "end": null, "variantCallingAnnotations": {"filtersApplied": null, "filtersPassed": null, "filtersFailed": [], "downsampled": null, "baseQRankSum": null, "fisherStrandBiasPValue": 3.0, "rmsMapQ": 0.0, "mapq0Reads": 5, "mqRankSum": null, "readPositionRankSum": null, "genotypePriors": [], "genotypePosteriors": [], "vqslod": null, "culprit": null, "attributes": {}}, "sampleId": "NA12878", "sampleDescription": null, "processingDescription": null, "alleles": ["REF", "ALT"], "expectedAlleleDosage": null, "referenceReadDepth": null, "alternateReadDepth": null, "readDepth": null, "minReadDepth": null, "genotypeQuality": null, "genotypeLikelihoods": [], "nonReferenceLikelihoods": [], "strandBiasComponents": [0, 2], "splitFromMultiAllelic": false, "phased": false, "phaseSetId": null, "phaseQuality": null}. - Convert ADAM SNV w/ genotypes but bad SB to htsjdk with lenient validation - Convert htsjdk multi-allelic sites-only SNVs to ADAM - Convert htsjdk multi-allelic SNVs to ADAM and back to htsjdk - Convert gVCF reference records to ADAM - Convert htsjdk variant context with no IDs to ADAM - Convert htsjdk variant context with one ID to ADAM - Convert htsjdk variant context with multiple IDs to ADAM - Convert ADAM variant context with no names to htsjdk - Convert ADAM variant context with one name to htsjdk - Convert ADAM variant context with multiple names to htsjdk - Convert ADAM variant context with null filters applied to htsjdk - Convert ADAM variant context with no filters applied to htsjdk - Convert ADAM variant context with passing filters to htsjdk - Convert ADAM variant context with failing filters to htsjdk - no phasing set going htsjdk->adam - phased but no phase set info going htsjdk->adam - set phase set and extract going htsjdk->adam - no allelic depth going htsjdk->adam - set allelic depth going htsjdk->adam - no gt read depth going htsjdk->adam - extract gt read depth going htsjdk->adam - no min gt read depth going htsjdk->adam - extract min gt read depth going htsjdk->adam - no genotype quality going htsjdk->adam - extract genotype quality going htsjdk->adam - no phred likelihood going htsjdk->adam - extract phred likelihoods going htsjdk->adam - no strand bias info going htsjdk->adam - extract strand bias info going htsjdk->adam - no filters going htsjdk->adam - filters passed going htsjdk->adam - extract single filter going htsjdk->adam - extract multiple filters going htsjdk->adam - no fisher strand bias going htsjdk->adam - extract fisher strand bias going htsjdk->adam - no rms mapping quality going htsjdk->adam - extract rms mapping quality going htsjdk->adam - no mq0 going htsjdk->adam - extract mq0 going htsjdk->adam - no gt read depth going adam->htsjdk - extract gt read depth going adam->htsjdk - throw iae if missing one component of gt read depth going adam->htsjdk - no depth going adam->htsjdk - extract depth going adam->htsjdk - no min depth going adam->htsjdk - extract min depth going adam->htsjdk - no quality going adam->htsjdk - extract quality going adam->htsjdk - no genotype likelihoods going adam->htsjdk - extract genotype likelihoods going adam->htsjdk - no strand bias going adam->htsjdk - malformed strand bias going adam->htsjdk - extract strand bias going adam->htsjdk - no phasing info going adam->htsjdk - unphased going adam->htsjdk - phased but no ps/pq going adam->htsjdk - phased but no pq going adam->htsjdk - phased but no ps going adam->htsjdk - phased going adam->htsjdk - no filter info going adam->htsjdk - if filters applied, must set passed/failed going adam->htsjdk - filters passed going adam->htsjdk - if filters failed, must set filters failed going adam->htsjdk - single filter failed going adam->htsjdk - multiple filters failed going adam->htsjdk - no fisher strand bias going adam->htsjdk - extract fisher strand bias going adam->htsjdk - no rms mapping quality going adam->htsjdk - extract rms mapping quality going adam->htsjdk - no mapping quality 0 reads going adam->htsjdk - extract mapping quality 0 reads going adam->htsjdk - no names set going htsjdk->adam - single name set going htsjdk->adam - multiple names set going htsjdk->adam - no quality going htsjdk->adam - quality set going htsjdk->adam - no filters applied going htsjdk->adam - filters applied and passed going htsjdk->adam - single filter applied and failed going htsjdk->adam - multiple filters applied and failed going htsjdk->adam - no names set adam->htsjdk - set a single name adam->htsjdk - set multiple names adam->htsjdk - no qual set adam->htsjdk - qual is set adam->htsjdk - no filters applied adam->htsjdk - null filters applied adam->htsjdk - filters passed adam->htsjdk - if filter failed, must have filters adam->htsjdk - single filter failed adam->htsjdk - multiple filters failed adam->htsjdk - no ancestral allele set going htsjdk->adam - ancestral allele set going htsjdk->adam - no dbsnp membership set going htsjdk->adam - dbsnp membership set going htsjdk->adam - no hapmap2 membership set going htsjdk->adam - hapmap2 membership set going htsjdk->adam - no hapmap3 membership set going htsjdk->adam - hapmap3 membership set going htsjdk->adam - no validated set going htsjdk->adam - validated set going htsjdk->adam - no 1000G membership set going htsjdk->adam - 1000G membership set going htsjdk->adam - not somatic going htsjdk->adam - somatic going htsjdk->adam - no allele count going htsjdk->adam - single allele count going htsjdk->adam - multiple allele counts going htsjdk->adam - no allele frequency going htsjdk->adam - single allele frequency going htsjdk->adam - single allele frequency is +Inf going htsjdk->adam - single allele frequency is -Inf going htsjdk->adam - multiple allele frequencies going htsjdk->adam - no CIGAR going htsjdk->adam - single CIGAR going htsjdk->adam - multiple CIGARs going htsjdk->adam - no read depth going htsjdk->adam - single read depth going htsjdk->adam - multiple read depths going htsjdk->adam - no forward read depth going htsjdk->adam - single forward read depth going htsjdk->adam - multiple forward read depths going htsjdk->adam - no reverse read depth going htsjdk->adam - single reverse read depth going htsjdk->adam - multiple reverse read depths going htsjdk->adam - no ancestral allele set adam->htsjdk - ancestral allele set adam->htsjdk - no dbsnp membership set adam->htsjdk - dbsnp membership set adam->htsjdk - no hapmap2 membership set adam->htsjdk - hapmap2 membership set adam->htsjdk - no hapmap3 membership set adam->htsjdk - hapmap3 membership set adam->htsjdk - no validated set adam->htsjdk - validated set adam->htsjdk - no 1000G membership set adam->htsjdk - 1000G membership set adam->htsjdk - no allele count set adam->htsjdk - allele count set adam->htsjdk - no allele frequency set adam->htsjdk - allele frequency set adam->htsjdk - no cigar set adam->htsjdk - cigar set adam->htsjdk - no read depth set adam->htsjdk - read depth set adam->htsjdk - read depth without reference read depth - reference read depth without read depth - no forward read depth set adam->htsjdk - forward read depth set adam->htsjdk - reference forward read depth without forward read depth - forward read depth without reference forward read depth - no reverse read depth set adam->htsjdk - reverse read depth set adam->htsjdk - reference reverse read depth without reverse read depth - reverse read depth without reference reverse read depth - VCF INFO attribute Number=0 Type=Flag adam->htsjdk - VCF INFO attribute Number=4 Type=Flag adam->htsjdk unsupported, strict !!! IGNORED !!! - VCF INFO attribute Number=1 Type=Integer adam->htsjdk - VCF INFO attribute Number=4 Type=Integer adam->htsjdk - VCF INFO attribute Number=A Type=Integer adam->htsjdk - VCF INFO attribute Number=R Type=Integer adam->htsjdk - VCF INFO attribute Number=R Type=String adam->htsjdk - VCF INFO attribute Number=G Type=String adam->htsjdk not supported - VCF INFO attribute Number=0 Type=Flag htsjdk->adam - VCF INFO attribute Number=1 Type=Integer htsjdk->adam - VCF INFO attribute Number=4 Type=Integer htsjdk->adam - VCF INFO attribute Number=4 Type=Float htsjdk->adam - VCF INFO attribute Number=A Type=Integer htsjdk->adam - VCF INFO attribute Number=R Type=Integer htsjdk->adam - VCF INFO attribute Number=R Type=String htsjdk->adam - VCF INFO attribute Number=G Type=String htsjdk->adam not supported - VCF FORMAT attribute Number=0 Type=Flag adam->htsjdk not supported - VCF FORMAT attribute Number=1 Type=Integer adam->htsjdk - VCF FORMAT attribute Number=4 Type=Integer adam->htsjdk - VCF FORMAT attribute Number=A Type=Integer adam->htsjdk - VCF FORMAT attribute Number=R Type=Integer adam->htsjdk - VCF FORMAT attribute Number=R Type=String adam->htsjdk - VCF FORMAT attribute Number=0 Type=Flag htsjdk->adam is not supported - VCF FORMAT attribute Number=1 Type=Integer htsjdk->adam - VCF FORMAT attribute Number=4 Type=Integer htsjdk->adam - VCF FORMAT attribute Number=4 Type=Float htsjdk->adam - VCF FORMAT attribute Number=A Type=Integer htsjdk->adam - VCF FORMAT attribute Number=R Type=Integer htsjdk->adam - VCF FORMAT attribute Number=R Type=String htsjdk->adam - VCF FORMAT attribute Number=G Type=String htsjdk->adam - respect end position for symbolic alts FastqRecordConverterSuite: - test read name suffix and index of pair must match - test parseReadInFastq, read suffix removal - test parseReadInFastq, read metadata removal - test parseReadInFastq, read quality shorter than read length, padded with B - test parseReadInFastq, read quality longer than read length - test parseReadInFastq, no read quality - testing FastqRecordConverter.convertPair with valid input - testing FastqRecordConverter.convertPair with 7-line invalid input - testing FastqRecordConverter.convertPair with invalid input: first read length and qual don't match - testing FastqRecordConverter.convertPair with invalid input: second read length and qual don't match - testing FastqRecordConverter.convertFragment with valid input - testing FastqRecordConverter.convertFragment with another valid input having /1, /2 suffixes - testing FastqRecordConverter.convertFragment with invalid input: different read names - testing FastqRecordConverter.convertRead with valid input - testing FastqRecordConverter.convertRead with valid input: setFirstOfPair set to true - testing FastqRecordConverter.convertRead with valid input: setSecondOfPair set to true - testing FastqRecordConverter.convertRead with valid input: setFirstOfPair and setSecondOfPair both true - testing FastqRecordConverter.convertRead with valid input, no qual, strict - testing FastqRecordConverter.convertRead with valid input, no qual, not strict AttributeSuite: - test SAMTagAndValue parsing - Attributes can be correctly re-encoded as text SAM tags GFF3HeaderWriterSuite: - write gff3 header pragma BinQualitiesSuite: - make a quality score bin - can't have a quality score bin with negative score - can't have a quality score bin with high score below low - can't have a quality score bin with high score above 255 - can't have a quality score bin with score outside - make a quality score bin from a string - quality score bin must have exactly 3 elements - quality score bin must be integers - must define at least one bin - build multiple bins - rewrite quality scores for a read - rewriting quality scores fails if bins overlap - rewriting quality scores fails if base is out of bounds - skip read if qualities are null - rewrite a read IndexedFastaFileSuite: - correctly generates sequence dictionary from .dict file - correctly gets sequence - fails when fai index is not provided 2019-09-18 10:23:49 WARN IndexedFastaFile:190 - Caught exception java.lang.NullPointerException when loading FASTA sequence dictionary. Using empty dictionary instead. - passes when dict is not provided and ValidationStringency = LENIENT SAMRecordConverterSuite: - testing the fields in an alignmentRecord obtained from a mapped samRecord conversion - testing the fields in an alignmentRecord obtained from an unmapped samRecord conversion - '*' quality gets nulled out - don't keep denormalized fields ADAMContextSuite: - ctr is accessible - load from an empty directory - sc.loadParquet should not fail on unmapped reads - sc.loadParquet should not load a file without a type specified - can read a small .SAM file - can read a small .SAM file with a bad header with lenient validation - loading a sam file with a bad header and strict stringency should fail - can read a small .CRAM file - can read a small .SAM with all attribute tag types - can filter a .SAM file based on quality - Can convert to phred - Can convert from phred - Can read a .gtf file - Can read a .bed file - Can read a BED 12 file - Can read a .narrowPeak file - Can read a .interval_list file 2019-09-18 10:23:53 WARN VariantContextConverter:1662 - Saw invalid info field java.lang.IllegalArgumentException: Multivalued flags are not supported for INFO lines: INFO=. Ignoring... 2019-09-18 10:23:53 WARN VariantContextConverter:2169 - Generating field extractor from header line INFO= failed: java.lang.IllegalArgumentException: Multivalue flags are not supported for INFO lines: INFO= - can read a small .vcf file with a validation issue - can read a small .vcf file 2019-09-18 10:23:53 WARN VCFInputFormat:218 - file:/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/2.11.12/test-classes/test.vcf.gz is not splittable, consider using block-compressed gzip (BGZF) - can read a gzipped .vcf file - can read a vcf file with an empty alt - can read a BGZF gzipped .vcf file with .gz file extension - can read a BGZF gzipped .vcf file with .bgz file extension - can read a vcf file with a projection - can read an uncompressed BCFv2.2 file !!! IGNORED !!! - can read a BGZF compressed BCFv2.2 file !!! IGNORED !!! - loadIndexedVcf with 1 ReferenceRegion - loadIndexedVcf with multiple ReferenceRegions - load block compressed interleaved fastq - import records from interleaved FASTQ: 1 - import records from interleaved FASTQ: 2 - import records from interleaved FASTQ: 3 - import records from interleaved FASTQ: 4 - import block compressed single fastq - import records from single ended FASTQ: 1 - import records from single ended FASTQ: 2 - import records from single ended FASTQ: 3 - import records from single ended FASTQ: 4 - filter on load using the filter2 API - saveAsParquet with file path - saveAsParquet with file path, block size, page size - saveAsParquet with save args - read a HLA fasta from GRCh38 - read a gzipped fasta file - read a fasta file with comments, gaps, and translation stops - loadIndexedBam with 1 ReferenceRegion - loadIndexedBam with multiple ReferenceRegions - loadIndexedBam with multiple ReferenceRegions and indexed bams - loadIndexedBam with multiple ReferenceRegions and a directory of indexed bams - loadIndexedBam should throw exception without an index file - loadIndexedBam should work with indexed file with index naming format .bai - loadIndexedBam glob should throw exception without an index file - loadBam with a glob - loadBam with a directory - load vcf with a glob - load vcf from a directory - load gvcf which contains a multi-allelic row from a directory - load and save gvcf which contains rows without likelihoods - parse annotations for multi-allelic rows - load parquet with globs - bad glob should fail - empty directory should fail - can read a SnpEff-annotated .vcf file - loadAlignments should not fail on single-end and paired-end fastq reads - load queryname sorted sam as fragments - load query grouped sam as fragments - load paired fastq - load paired fastq without cache - load paired fastq as fragments - load paired fastq as fragments without cache - load HTSJDK sequence dictionary - load Bedtools .genome file as sequence dictionary - load Bedtools .genome.txt file as sequence dictionary - load UCSC Genome Browser chromInfo.txt file as sequence dictionary - load unrecognized file extension as sequence dictionary fails - load BED features with Bedtools .genome file as sequence dictionary - load BED features with Bedtools .genome file as sequence dictionary, no matching features - convert program record - load program record from sam file - load alignments from data frame - load features from data frame - load fragments from data frame - load genotypes from data frame with default header lines - load genotypes from data frame with empty header lines - load reads from data frame - load sequences from data frame - load slices from data frame - load variant contexts from data frame with default header lines - load variant contexts from data frame with empty header lines - load variants from data frame with default header lines - load variants from data frame with empty header lines - load alignments with metadata from data frame - load features with metadata from data frame - load fragments with metadata from data frame - load genotypes with metadata from data frame - load variant contexts with metadata from data frame - load variants with metadata from data frame - read a fasta file with short sequences as sequences - read a fasta file with long sequences as sequences - read a fasta file with short sequences as slices - read a fasta file with long sequences as slices CycleCovariateSuite: - compute covariates for an unpaired read on the negative strand - compute covariates for a first-of-pair read on the negative strand - compute covariates for a second-of-pair read on the negative strand - compute covariates for an unpaired read on the positive strand - compute covariates for a first-of-pair read on the positive strand - compute covariates for a second-of-pair read on the positive strand ConsensusGeneratorFromKnownsSuite: - no consensuses for empty target - no consensuses for reads that don't overlap a target - return a consensus for read overlapping a single target RichCigarSuite: - moving 2 bp from a deletion to a match operator - moving 2 bp from a insertion to a match operator - moving 1 base in a two element cigar - move to start of read - process right clipped cigar - process left clipped cigar - process cigar clipped on both ends MDTaggingSuite: - test adding MDTags over boundary - test adding MDTags; reads span full contig - test adding MDTags; reads start inside first fragment - test adding MDTags; reads end inside last fragment - test adding MDTags; reads start inside first fragment and end inside last fragment - test adding MDTags; reads start and end in middle fragements 2019-09-18 10:24:46 WARN BlockManager:66 - Putting block rdd_5_3 failed due to exception java.lang.Exception: Contig chr2 not found in reference map with keys: chr1. 2019-09-18 10:24:46 WARN BlockManager:66 - Block rdd_5_3 could not be removed as it was not found on disk or in memory 2019-09-18 10:24:46 ERROR Executor:91 - Exception in task 3.0 in stage 2.0 (TID 11) java.lang.Exception: Contig chr2 not found in reference map with keys: chr1 at org.bdgenomics.adam.util.ReferenceContigMap$$anonfun$extract$1.apply(ReferenceContigMap.scala:63) at org.bdgenomics.adam.util.ReferenceContigMap$$anonfun$extract$1.apply(ReferenceContigMap.scala:63) at scala.collection.MapLike$class.getOrElse(MapLike.scala:128) at scala.collection.AbstractMap.getOrElse(Map.scala:59) at org.bdgenomics.adam.util.ReferenceContigMap.extract(ReferenceContigMap.scala:61) at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1$$anonfun$apply$2.apply(MDTagging.scala:76) at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1$$anonfun$apply$2.apply(MDTagging.scala:71) at scala.Option$WithFilter.map(Option.scala:207) at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1.apply(MDTagging.scala:71) at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1.apply(MDTagging.scala:69) at scala.collection.Iterator$$anon$11.next(Iterator.scala:410) at org.apache.spark.storage.memory.MemoryStore.putIterator(MemoryStore.scala:222) at org.apache.spark.storage.memory.MemoryStore.putIteratorAsValues(MemoryStore.scala:299) at org.apache.spark.storage.BlockManager$$anonfun$doPutIterator$1.apply(BlockManager.scala:1165) at org.apache.spark.storage.BlockManager$$anonfun$doPutIterator$1.apply(BlockManager.scala:1156) at org.apache.spark.storage.BlockManager.doPut(BlockManager.scala:1091) at org.apache.spark.storage.BlockManager.doPutIterator(BlockManager.scala:1156) at org.apache.spark.storage.BlockManager.getOrElseUpdate(BlockManager.scala:882) at org.apache.spark.rdd.RDD.getOrCompute(RDD.scala:335) at org.apache.spark.rdd.RDD.iterator(RDD.scala:286) at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90) at org.apache.spark.scheduler.Task.run(Task.scala:123) at org.apache.spark.executor.Executor$TaskRunner$$anonfun$10.apply(Executor.scala:408) at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1360) at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:414) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) at java.lang.Thread.run(Thread.java:748) 2019-09-18 10:24:46 WARN TaskSetManager:66 - Lost task 3.0 in stage 2.0 (TID 11, localhost, executor driver): java.lang.Exception: Contig chr2 not found in reference map with keys: chr1 at org.bdgenomics.adam.util.ReferenceContigMap$$anonfun$extract$1.apply(ReferenceContigMap.scala:63) at org.bdgenomics.adam.util.ReferenceContigMap$$anonfun$extract$1.apply(ReferenceContigMap.scala:63) at scala.collection.MapLike$class.getOrElse(MapLike.scala:128) at scala.collection.AbstractMap.getOrElse(Map.scala:59) at org.bdgenomics.adam.util.ReferenceContigMap.extract(ReferenceContigMap.scala:61) at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1$$anonfun$apply$2.apply(MDTagging.scala:76) at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1$$anonfun$apply$2.apply(MDTagging.scala:71) at scala.Option$WithFilter.map(Option.scala:207) at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1.apply(MDTagging.scala:71) at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1.apply(MDTagging.scala:69) at scala.collection.Iterator$$anon$11.next(Iterator.scala:410) at org.apache.spark.storage.memory.MemoryStore.putIterator(MemoryStore.scala:222) at org.apache.spark.storage.memory.MemoryStore.putIteratorAsValues(MemoryStore.scala:299) at org.apache.spark.storage.BlockManager$$anonfun$doPutIterator$1.apply(BlockManager.scala:1165) at org.apache.spark.storage.BlockManager$$anonfun$doPutIterator$1.apply(BlockManager.scala:1156) at org.apache.spark.storage.BlockManager.doPut(BlockManager.scala:1091) at org.apache.spark.storage.BlockManager.doPutIterator(BlockManager.scala:1156) at org.apache.spark.storage.BlockManager.getOrElseUpdate(BlockManager.scala:882) at org.apache.spark.rdd.RDD.getOrCompute(RDD.scala:335) at org.apache.spark.rdd.RDD.iterator(RDD.scala:286) at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90) at org.apache.spark.scheduler.Task.run(Task.scala:123) at org.apache.spark.executor.Executor$TaskRunner$$anonfun$10.apply(Executor.scala:408) at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1360) at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:414) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) at java.lang.Thread.run(Thread.java:748) 2019-09-18 10:24:46 ERROR TaskSetManager:70 - Task 3 in stage 2.0 failed 1 times; aborting job - try realigning a read on a missing contig, stringency == STRICT 2019-09-18 10:24:46 WARN MDTagging:190 - Caught exception when processing read chr2: java.lang.Exception: Contig chr2 not found in reference map with keys: chr1 - try realigning a read on a missing contig, stringency == LENIENT FileExtensionsSuite: - ends in gzip extension - is a vcf extension PhredUtilsSuite: - convert low phred score to log and back - convert high phred score to log and back - convert overflowing phred score to log and back and clip - convert negative zero log probability to phred and clip - round trip log probabilities ReadDatasetSuite: - create a new read genomic dataset - create a new read genomic dataset with sequence dictionary - save as parquet - round trip as parquet - save as fastq - save as single file fastq - filter read genomic dataset by reference region - broadcast region join reads and features - shuffle region join reads and features - convert reads to alignments - convert reads to sequences - convert reads to slices SmithWatermanSuite: - gather max position from simple scoring matrix - gather max position from irregular scoring matrix - gather max position from irregular scoring matrix with deletions - score simple alignment with constant gap - score irregular scoring matrix - score irregular scoring matrix with indel - can unroll cigars correctly - execute simple trackback - execute trackback with indel - run end to end smith waterman for simple reads - run end to end smith waterman for short sequences with indel - run end to end smith waterman for longer sequences with snp - run end to end smith waterman for longer sequences with short indel - run end to end smith waterman for shorter sequence in longer sequence - run end to end smith waterman for shorter sequence in longer sequence, with indel - smithWaterman - simple alignment MdTagSuite: - null md tag - zero length md tag - md tag with non-digit initial value - md tag invalid base - md tag, pure insertion - md tag, pure insertion, test 2 - md tag pure insertion equality - md tag equality and hashcode - valid md tags - get start of read with no mismatches or deletions - get start of read with no mismatches, but with a deletion at the start - get start of read with mismatches at the start - get end of read with no mismatches or deletions - check that mdtag and rich record return same end - get end of read with no mismatches, but a deletion at end - CIGAR with N operator - CIGAR with multiple N operators - CIGAR with P operators - Get correct matches for mdtag with insertion - Get correct matches for mdtag with mismatches and insertion - Get correct matches for mdtag with insertion between mismatches - Get correct matches for mdtag with intron between mismatches - Get correct matches for mdtag with intron and deletion between mismatches - Throw exception when number of deleted bases in mdtag disagrees with CIGAR - Get correct matches for mdtag with mismatch, insertion and deletion - Get correct matches for mdtag with mismatches, insertion and deletion - Get correct matches for MDTag with mismatches and deletions - Get correct matches base from MDTag and CIGAR with N - get end of read with mismatches and a deletion at end - get correct string out of mdtag with no mismatches - get correct string out of mdtag with mismatches at start - get correct string out of mdtag with deletion at end - get correct string out of mdtag with mismatches at end - get correct string out of complex mdtag - check complex mdtag - get gapped reference - move a cigar alignment by two for a read - rewrite alignment to all matches - rewrite alignment to two mismatches followed by all matches - rewrite alignment to include a deletion but otherwise all matches - rewrite alignment to include an insertion at the start of the read but otherwise all matches - create new md tag from read vs. reference, perfect match - create new md tag from read vs. reference, perfect alignment match, 1 mismatch - create new md tag from read vs. reference, alignment with deletion - create new md tag from read vs. reference, alignment with insert - handle '=' and 'X' operators - CIGAR/MD tag mismatch should cause errors GenomicDatasetSuite: - processing a command that is the spark root directory should return an absolute path - processing a command that is just a single word should do nothing - processing a command should handle arguments that include spaces - processing a command that is a single substitution should succeed - processing a command that is multiple words should split the string - process a command that is multiple words with a replacement - process a command that is multiple words with multiple replacements ParallelFileMergerSuite: - cannot write both empty gzip block and cram eof - buffer size must be non-negative - get the size of several files - block size must be positive and non-zero when trying to merge files - must provide files to merge - if two files are both below the block size, they should merge into one shard - merge two files where one is greater than the block size - merge a sharded sam file - merge a sharded bam file - merge a sharded cram file - can't turn a negative index into a path - generate a path from an index IndelTableSuite: - check for indels in a region with known indels - check for indels in a contig that doesn't exist - check for indels in a region without known indels - build indel table from rdd of variants SnpTableSuite: - create an empty snp table - create a snp table from variants on multiple contigs - create a snp table from a larger set of variants - perform lookups on multi-contig snp table - perform lookups on larger snp table RealignIndelsSuite: - map reads to targets - checking mapping to targets for artificial reads - checking alternative consensus for artificial reads - checking extraction of reference from reads - checking realigned reads for artificial input - checking realigned reads for artificial input with reference file - checking realigned reads for artificial input using knowns - checking realigned reads for artificial input using knowns and reads - skip realigning reads if target is highly covered - skip realignment if target is an insufficient LOD improvement - realign reads to an insertion - test mismatch quality scoring - test mismatch quality scoring for no mismatches - test mismatch quality scoring for offset - test mismatch quality scoring with early exit - test mismatch quality scoring after unpacking read - we shouldn't try to realign a region with no target - we shouldn't try to realign reads with no indel evidence - test OP and OC tags - realign a read with an insertion that goes off the end of the read - if realigning a target doesn't improve the LOD, don't drop reads - extract seq/qual from a read with no clipped bases - extract seq/qual from a read with clipped bases at start - extract seq/qual from a read with clipped bases at end - if unclip is selected, don't drop base when extracting from a read with clipped bases - get cigar and coordinates for read that spans indel, no clipped bases - get cigar and coordinates for read that spans deletion, clipped bases at start - get cigar and coordinates for read that falls wholly before insertion - get cigar and coordinates for read that falls wholly after insertion - get cigar and coordinates for read that falls wholly after deletion - get cigar and coordinates for read that partially spans insertion, no clipped bases - get cigar and coordinates for read that partially spans insertion, clipped bases at end - get cigar and coordinates for read that partially spans insertion, clipped bases both ends BaseQualityRecalibrationSuite: - BQSR Test Input #1 w/ VCF Sites without caching - BQSR Test Input #1 w/ VCF Sites with caching - BQSR Test Input #1 w/ VCF Sites with serialized caching DinucCovariateSuite: - computing dinucleotide pairs for a single base sequence should return (N,N) - compute dinucleotide pairs for a string of all valid bases - compute dinucleotide pairs for a string with an N - compute covariates for a read on the negative strand - compute covariates for a read on the positive strand SequenceDictionarySuite: - Convert from sam sequence record and back - Convert from SAM sequence dictionary file (with extra fields) - merge into existing dictionary - Convert from SAM sequence dictionary and back - Can retrieve sequence by name - SequenceDictionary's with same single element are equal - SequenceDictionary's with same two elements are equals - SequenceDictionary's with different elements are unequal - SequenceDictionaries with same elements in different order are compatible - isCompatible tests equality on overlap - The addition + works correctly - The append operation ++ works correctly - ContainsRefName works correctly for different string types - Apply on name works correctly for different String types - convert from sam sequence record and back - convert from sam sequence dictionary and back - conversion to sam sequence dictionary has correct sort order - load sequence dictionary from VCF file - empty sequence dictionary must be empty - test filter to reference name - test filter to reference names - test filter to reference name by function GenomicPositionPartitionerSuite: - partitions the UNMAPPED ReferencePosition into the top partition - if we do not have a contig for a record, we throw an IAE - partitioning into N pieces on M total sequence length, where N > M, results in M partitions - correctly partitions a single dummy sequence into two pieces - correctly counts cumulative lengths - correctly partitions positions across two dummy sequences - test that we can range partition ADAMRecords - test that we can range partition ADAMRecords indexed by sample - test that simple partitioning works okay on a reasonable set of ADAMRecords - test indexed ReferencePosition partitioning works on a set of indexed ADAMRecords CoverageSuite: - Convert to coverage from valid Feature - Convert to coverage from valid Feature with sampleId - Convert to coverage from Feature with null/empty contigName fails with correct error - Convert to coverage from Feature with no start/end position fails with correct error - Convert to coverage from Feature with no score fails with correct error InnerTreeRegionJoinSuite: - Ensure same reference regions get passed together - Overlapping reference regions - Multiple reference regions do not throw exception RichAlignmentRecordSuite: - Unclipped Start - Unclipped End - tags contains optional fields - read overlap unmapped read - read overlap reference position - read overlap same position different contig VariantDatasetSuite: - union two variant genomic datasets together - round trip to parquet - save and reload from partitioned parquet - use broadcast join to pull down variants mapped to targets - use right outer broadcast join to pull down variants mapped to targets - use shuffle join to pull down variants mapped to targets - use right outer shuffle join to pull down variants mapped to targets - use left outer shuffle join to pull down variants mapped to targets - use full outer shuffle join to pull down variants mapped to targets - use shuffle join with group by to pull down variants mapped to targets - use right outer shuffle join with group by to pull down variants mapped to targets - convert back to variant contexts - load parquet to sql, save, re-read from avro 2019-09-18 10:25:50 WARN DatasetBoundSliceDataset:190 - Saving directly as Parquet from SQL. Options other than compression codec are ignored. - transform variants to slice genomic dataset - transform variants to coverage genomic dataset - transform variants to feature genomic dataset - transform variants to fragment genomic dataset - transform variants to read genomic dataset - transform variants to genotype genomic dataset - transform variants to variant context genomic dataset - filter RDD bound variants to filters passed - filter dataset bound variants to filters passed - filter RDD bound variants by quality - filter dataset bound variants by quality - filter RDD bound variants by read depth - filter dataset bound variants by read depth - filter RDD bound variants by reference read depth - filter dataset bound variants by reference read depth - filter RDD bound single nucleotide variants - filter dataset bound single nucleotide variants - filter RDD bound multiple nucleotide variants - filter dataset bound multiple nucleotide variants - filter RDD bound indel variants - filter dataset bound indel variants - filter RDD bound variants to single nucleotide variants - filter dataset bound variants to single nucleotide variants - filter RDD bound variants to multiple nucleotide variants - filter dataset bound variants to multiple nucleotide variants - filter RDD bound variants to indel variants - filter dataset bound variants to indel variants - transform dataset via java API Run completed in 7 minutes, 28 seconds. Total number of tests run: 1175 Suites: completed 68, aborted 0 Tests: succeeded 1175, failed 0, canceled 0, ignored 5, pending 0 All tests passed. [INFO] [INFO] >>> scoverage-maven-plugin:1.1.1:report (default-cli) > [scoverage]test @ adam-core-spark2_2.11 >>> [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-core-spark2_2.11 --- [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-core-spark2_2.11 --- [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-core-spark2_2.11 --- [INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala added. [INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/generated-sources/src/main/scala added. [INFO] [INFO] --- exec-maven-plugin:1.5.0:java (generate-scala-products) @ adam-core-spark2_2.11 --- SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder". SLF4J: Defaulting to no-operation (NOP) logger implementation SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details. [INFO] [INFO] --- exec-maven-plugin:1.5.0:java (generate-scala-projection-fields) @ adam-core-spark2_2.11 --- SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder". SLF4J: Defaulting to no-operation (NOP) logger implementation SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details. [INFO] [INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-core-spark2_2.11 --- [INFO] Modified 2 of 203 .scala files [INFO] [INFO] --- scoverage-maven-plugin:1.1.1:pre-compile (default-cli) @ adam-core-spark2_2.11 --- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-core-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-core-spark2_2.11 --- [INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/java:-1: info: compiling [INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala:-1: info: compiling [INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/generated-sources/src/main/scala:-1: info: compiling [INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/generated-sources/annotations:-1: info: compiling [INFO] Compiling 139 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/2.11.12/scoverage-classes at 1568827573924 [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicDataset.scala:3099: warning: no valid targets for annotation on value uTag - it is discarded unused. You may specify targets with meta-annotations, e.g. @(transient @getter) [WARNING] @transient val uTag: TypeTag[U] [WARNING] ^ [INFO] [info] Cleaning datadir [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/scoverage-data] [INFO] [info] Beginning coverage instrumentation [WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos. [WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos. [WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos. [WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos. [WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos. [WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos. [WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos. [WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos. [WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos. [WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos. [WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos. [WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos. [WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos. [WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos. [WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos. [WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos. [WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos. [WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos. [WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos. [WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos. [WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos. [WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos. [WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos. [WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos. [WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos. [WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos. [WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos. [WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos. [WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos. [WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos. [WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos. [WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos. [INFO] [info] Instrumentation completed [17098 statements] [INFO] [info] Wrote instrumentation file [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/scoverage-data/scoverage.coverage.xml] [INFO] [info] Will write measurement data to [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/scoverage-data] [WARNING] warning: there were 89 deprecation warnings; re-run with -deprecation for details [WARNING] warning: there were 5 feature warnings; re-run with -feature for details [WARNING] three warnings found [INFO] prepare-compile in 0 s [INFO] compile in 40 s [INFO] [INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-core-spark2_2.11 --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 6 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/2.11.12/scoverage-classes [INFO] [INFO] --- scoverage-maven-plugin:1.1.1:post-compile (default-cli) @ adam-core-spark2_2.11 --- [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-core-spark2_2.11 --- [INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala added. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-core-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 152 resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-core-spark2_2.11 --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-core-spark2_2.11 --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-core-spark2_2.11 --- [INFO] Tests are skipped. [INFO] [INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-core-spark2_2.11 --- Discovery starting. Discovery completed in 2 seconds, 568 milliseconds. Run starting. Expected test count is: 1175 RepairPartitionsSuite: - don't pull from the first partition - properly handle pulling from an empty iterator - gets a single read from the partition if there are no other reads in the pair - gets all the reads from a pair from the start of a partition - properly handle dropping from an empty iterator - don't drop from the first partition - drop a single read from the partition if there are no other reads in the pair - drops all the reads from a pair from the start of a partition - only append to the first partition - drop a single read from the partition and append read when in the middle - drop reads from the start and don't append when in the last partition - can't have more records than number of partitions - unroll array for broadcast 2019-09-18 10:26:59 WARN Utils:66 - Your hostname, research-jenkins-worker-09 resolves to a loopback address: 127.0.1.1; using 192.168.10.31 instead (on interface enp4s0f0) 2019-09-18 10:26:59 WARN Utils:66 - Set SPARK_LOCAL_IP if you need to bind to another address 2019-09-18 10:26:59 WARN NativeCodeLoader:62 - Unable to load native-hadoop library for your platform... using builtin-java classes where applicable - move pairs around an rdd FlagStatSuite: - Standard FlagStat test ModPartitionerSuite: - report number of partitions correctly - partition a number that is lower than the number of partitions and positive - partition a number that is greater than the number of partitions and positive - partition a number that is lower than the number of partitions and negative - partition a number that is greater than the number of partitions and negative - fire an exception if input is not an integer TwoBitFileSuite: - correctly read sequence from .2bit file - correctly return masked sequences from .2bit file - correctly return Ns from .2bit file - correctly calculates sequence dictionary NonoverlappingRegionsSuite: - alternating returns an alternating seq of items - Single region returns itself - Two adjacent regions will be merged - Nonoverlapping regions will all be returned - Many overlapping regions will all be merged - ADAMRecords return proper references ReferencePositionSuite: - create reference position from mapped read - create reference position from variant - create reference position from genotype - create reference position from variant starting at vcf 0 - create reference position from genotype starting at vcf 0 ConsensusGeneratorFromReadsSuite: - checking search for consensus list for artificial reads FragmentConverterSuite: - build a fragment collector and convert to a read - if a fragment isn't associated with a contig, don't get a fragment collector - convert an rdd of discontinuous fragments, all from the same contig - convert an rdd of contiguous fragments, all from the same contig - convert an rdd of varied fragments from multiple contigs FileMergerSuite: - cannot write both empty gzip block and cram eof - buffer size must be non-negative AlignmentRecordDatasetSuite: - sorting reads - unmapped reads go at the end when sorting - coverage does not fail on unmapped reads 2019-09-18 10:27:11 WARN Utils:66 - Truncated the string representation of a plan since it was too large. This behavior can be adjusted by setting 'spark.debug.maxToStringFields' in SparkEnv.conf. - computes coverage - computes coverage with multiple samples - merges adjacent records with equal coverage values - sorting reads by reference index - round trip from ADAM to SAM and back to ADAM produces equivalent Read values - round trip with single CRAM file produces equivalent Read values - round trip with sharded CRAM file produces equivalent Read values - SAM conversion sets read mapped flag properly - load long FASTQ reads - load FASTQ with no bases - convert malformed FASTQ (no quality scores) => SAM => well-formed FASTQ => SAM - round trip from ADAM to FASTQ and back to ADAM produces equivalent Read values - round trip from ADAM to paired-FASTQ and back to ADAM produces equivalent Read values - writing a small file with tags should produce the expected result - writing a small sorted file as SAM should produce the expected result - writing unordered sam from unordered sam - writing ordered sam from unordered sam - write single sam file back - write single bam file back - saveAsParquet with save args, sequence dictionary, and read group dictionary - load parquet to sql, save, re-read from avro - load from sam, save as partitioned parquet, and re-read from partitioned parquet - save as SAM format - save as sorted SAM format - save as BAM format - save as sorted BAM format - save as FASTQ format - save as ADAM parquet format - saveAsSam SAM format - saveAsSam SAM format single file - saveAsSam sorted SAM format single file - saveAsSam BAM format - saveAsSam BAM format single file - saveAsSam sorted BAM format single file - saveAsFastq - saveAsFastq as single file - saveAsFastq with original base qualities - saveAsFastq sorted by read name - saveAsFastq sorted by read name with original base qualities 2019-09-18 10:27:42 WARN RDDBoundAlignmentRecordDataset:190 - Found 20 read names that don't occur exactly twice: 1x: 20 Samples: simread:1:237728409:true simread:1:195211965:false simread:1:163841413:false simread:1:231911906:false simread:1:26472783:false simread:1:165341382:true simread:1:240344442:true simread:1:50683371:false simread:1:240997787:true simread:1:14397233:false simread:1:207027738:true simread:1:20101800:true simread:1:101556378:false simread:1:37577445:false simread:1:189606653:true simread:1:5469106:true simread:1:186794283:true simread:1:89554252:false simread:1:153978724:false simread:1:169801933:true - saveAsFastq paired FASTQ 2019-09-18 10:27:43 WARN RDDBoundAlignmentRecordDataset:190 - Found 20 read names that don't occur exactly twice: 1x: 20 Samples: simread:1:237728409:true simread:1:195211965:false simread:1:163841413:false simread:1:231911906:false simread:1:26472783:false simread:1:165341382:true simread:1:240344442:true simread:1:50683371:false simread:1:240997787:true simread:1:14397233:false simread:1:207027738:true simread:1:20101800:true simread:1:101556378:false simread:1:37577445:false simread:1:189606653:true simread:1:5469106:true simread:1:186794283:true simread:1:89554252:false simread:1:153978724:false simread:1:169801933:true - saveAsPairedFastq 2019-09-18 10:27:45 WARN RDDBoundAlignmentRecordDataset:190 - Found 20 read names that don't occur exactly twice: 1x: 20 Samples: simread:1:237728409:true simread:1:195211965:false simread:1:163841413:false simread:1:231911906:false simread:1:26472783:false simread:1:165341382:true simread:1:240344442:true simread:1:50683371:false simread:1:240997787:true simread:1:14397233:false simread:1:207027738:true simread:1:20101800:true simread:1:101556378:false simread:1:37577445:false simread:1:189606653:true simread:1:5469106:true simread:1:186794283:true simread:1:89554252:false simread:1:153978724:false simread:1:169801933:true - saveAsPairedFastq as single files - don't lose any reads when piping as SAM 2019-09-18 10:27:56 WARN OutFormatterRunner:190 - Piped command List(sleep, 10) timed out after 5 seconds. 2019-09-18 10:27:56 WARN OutFormatterRunner:190 - Piped command List(sleep, 10) timed out after 5 seconds. - lose all records when a command times out - lose no records without a timeout 2019-09-18 10:28:17 WARN OutFormatterRunner:190 - Piped command List(python, /tmp/adamTestMvnQOhk7M0/spark-3885bd87-42e7-42ab-85ae-2fd2860ded2f/userFiles-b9dd4c18-8f06-40f1-81f5-7619d39cd0d9/timeout.py) timed out after 5 seconds. 2019-09-18 10:28:17 WARN OutFormatterRunner:190 - Piped command List(python, /tmp/adamTestMvnQOhk7M0/spark-3885bd87-42e7-42ab-85ae-2fd2860ded2f/userFiles-b9dd4c18-8f06-40f1-81f5-7619d39cd0d9/timeout.py) timed out after 5 seconds. - lose some records when a command times out - don't lose any reads when piping as SAM using java pipe - don't lose any reads when piping as BAM - don't lose any reads when piping fastq to sam - can properly set environment variables inside of a pipe - read vcf from alignment record pipe !!! IGNORED !!! - use broadcast join to pull down reads mapped to targets - use broadcast join against to pull down reads mapped to targets - use right outer broadcast join to pull down reads mapped to targets - use right outer broadcast join against to pull down reads mapped to targets - use shuffle join with feature spanning partitions - use shuffle join to pull down reads mapped to targets - use shuffle join with flankSize to pull down reads mapped close to targets - use right outer shuffle join to pull down reads mapped to targets - use left outer shuffle join to pull down reads mapped to targets - use full outer shuffle join to pull down reads mapped to targets - use shuffle join with group by to pull down reads mapped to targets - use right outer shuffle join with group by to pull down reads mapped to targets - cannot provide empty quality score bins - cannot provide bins with a gap - cannot provide overlapping bins - binning quality scores in reads succeeds even if reads have no quality scores - bin quality scores in reads - union two read files together - test k-mer counter - test dataset based k-mer counter - transform reads to slice genomic dataset - transform reads to coverage genomic dataset - transform reads to feature genomic dataset - transform reads to fragment genomic dataset - transform reads to genotype genomic dataset loading /tmp/adamTestMvnQOhk7M0/TempSuite1720714797389791151.adam as parquet into RDD... loading /tmp/adamTestMvnQOhk7M0/TempSuite3855121510644068841.adam as parquet into RDD... - transform reads to variant genomic dataset - cannot have a null processing step ID - convert a processing description to htsjdk - GenomicDataset.sort does not fail on unmapped reads - GenomicDataset.sortLexicographically does not fail on unmapped reads - left normalize indels - running base recalibration with downsampling doesn't drop reads - filter RDD bound alignments by MAPQ - filter dataset bound alignments by MAPQ - filter RDD bound unaligned alignments - filter dataset bound unaligned alignments - filter RDD bound unpaired alignments - filter dataset bound unpaired alignments - filter RDD bound duplicate alignments - filter dataset bound duplicate alignments - filter RDD bound alignments to primary alignments - filter dataset bound alignments to primary alignments - filter RDD bound alignments to read group - filter dataset bound alignments to read group - filter RDD bound alignments to read groups - filter dataset bound alignments to read groups - filter RDD bound alignments to sample - filter dataset bound alignments to sample - filter RDD bound alignments to samples - filter dataset bound alignments to samples - sort by read name - transform dataset via java API - convert alignments to reads SingleReadBucketSuite: - convert unmapped pair to fragment - convert proper pair to fragment - convert read pair to fragment with first of pair chimeric read RecalibrationTableSuite: - look up quality scores in table FlankSlicesSuite: - don't put flanks on non-adjacent slices - put flanks on adjacent slices InterleavedFastqInputFormatSuite: - interleaved FASTQ hadoop reader: interleaved_fastq_sample1.ifq->interleaved_fastq_sample1.ifq.output - interleaved FASTQ hadoop reader: interleaved_fastq_sample2.ifq->interleaved_fastq_sample2.ifq.output - interleaved FASTQ hadoop reader: interleaved_fastq_sample3.ifq->interleaved_fastq_sample3.ifq.output - interleaved FASTQ hadoop reader: interleaved_fastq_sample4.ifq->interleaved_fastq_sample4.ifq.output - interleaved FASTQ hadoop reader: interleaved_fastq_sample5.ifq->interleaved_fastq_sample5.ifq.output TreeRegionJoinSuite: - run a join between data on a single contig ReferenceRegionSuite: - cannot create an empty predicate - parse empty string throws IllegalArgumentException - parse contigName only string into reference regions - parse to end strings into reference regions - parse string into reference regions - contains(: ReferenceRegion) - contains(: ReferencePosition) - merge - overlaps and covers - overlapsBy and coversBy - distance(: ReferenceRegion) - distance(: ReferencePosition) - unstrandedDistance - subtract fails on non-overlapping and non-covering regions - subtract - create region from unmapped read fails - create region from read with null alignment positions fails - create stranded region from unmapped read fails - create stranded region from read with null alignment positions fails - create stranded region from read with null alignment strand fails - create stranded region from read on forward strand - create stranded region from read on reverse strand - create region from mapped read contains read start and end - validate that adjacent regions can be merged - validate that non-adjacent regions cannot be merged - validate that nearby regions can be merged - validate that non-nearby regions cannot be merged - compute convex hull of two sets - region name is sanitized when creating region from read - intersection fails on non-overlapping regions - intersection fails when minOverlap is not met - compute intersection - overlap tests for oriented reference region - check the width of a reference region - make a reference region for a variant or genotype - make a reference region for a variant or genotype starting at VCF 0 - uniformly pad a reference region - uniformly pad a reference region into negative coordinate space, ensure non negative start - unevenly pad a reference region - unevenly pad a reference region into negative coordinate space, ensure non negative start - can build an open ended reference region - can build an open ended reference region with strand - can build a reference region with an open start position - can build a reference region with an open start position with strand - can build a reference region that covers the entirety of a contig - can build a reference region that covers the entirety of a contig with strand - convert a genotype and then get the reference region - create region from feature with null alignment positions fails - create stranded region from feature with null alignment positions fails - create stranded region from feature with null alignment strand fails - create stranded region from feature on forward strand - create stranded region from feature on reverse strand AlignmentRecordConverterSuite: - testing the fields in a converted ADAM Read - converting a read with null quality is OK - convert a read to fastq - reverse complement reads when converting to fastq - converting to fastq with unmapped reads where read reverse complemented flag (Ox10) was NOT set - converting to fastq with unmapped reads where reverse complemented flag (0x10) was set - converting a fragment with no alignments should yield unaligned reads - converting a fragment with alignments should restore the alignments - read negative strand is propagated even when not mapped CoverageDatasetSuite: - correctly saves coverage - can read a bed file to coverage - correctly filters coverage with predicate - keeps sample metadata - can read a bed file with multiple samples to coverage - correctly flatmaps coverage without aggregated bins - correctly flatmaps coverage with aggregated bins - collapses coverage records in one partition - approximately collapses coverage records in multiple partitions 2019-09-18 10:29:18 WARN DatasetBoundSliceDataset:190 - Saving directly as Parquet from SQL. Options other than compression codec are ignored. - transform coverage to slice genomic dataset - transform coverage to feature genomic dataset - transform coverage to fragment genomic dataset - transform coverage to read genomic dataset - transform coverage to genotype genomic dataset - transform coverage to variant genomic dataset - transform coverage to variant context genomic dataset - copy coverage rdd - copy coverage dataset - copy coverage rdd without sequence dictionary - copy coverage dataset without sequence dictionary - transform dataset via java API RecalibratorSuite: - don't replace quality if quality was null - if no covariates, return alignment - skip recalibration if base is below quality threshold - recalibrate changed bases above quality threshold SliceDatasetSuite: - create a new slice genomic dataset - create a new slice genomic dataset with sequence dictionary - merge slices into a sequence genomic dataset - save as parquet - round trip as parquet - save as fasta - save as single file fasta - convert slices to reads - convert slices to sequences GenotypeDatasetSuite: - union two genotype genomic datasets together - round trip to parquet - round trip to partitioned parquet - use broadcast join to pull down genotypes mapped to targets - use right outer broadcast join to pull down genotypes mapped to targets - use shuffle join to pull down genotypes mapped to targets - use right outer shuffle join to pull down genotypes mapped to targets - use left outer shuffle join to pull down genotypes mapped to targets - use full outer shuffle join to pull down genotypes mapped to targets - use shuffle join with group by to pull down genotypes mapped to targets - use right outer shuffle join with group by to pull down genotypes mapped to targets - convert back to variant contexts - load parquet to sql, save, re-read from avro 2019-09-18 10:29:47 WARN DatasetBoundSliceDataset:190 - Saving directly as Parquet from SQL. Options other than compression codec are ignored. - transform genotypes to slice genomic dataset - transform genotypes to coverage genomic dataset - transform genotypes to feature genomic dataset - transform genotypes to fragment genomic dataset - transform genotypes to read genomic dataset - transform genotypes to variant genomic dataset - transform genotypes to variant context genomic dataset - loading genotypes then converting to variants yields same output as loading variants - filter RDD bound genotypes to genotype filters passed - filter dataset bound genotypes to genotype filters passed - filter RDD bound genotypes by genotype quality - filter dataset bound genotypes by genotype quality - filter RDD bound genotypes by read depth - filter dataset bound genotypes by read depth - filter RDD bound genotypes by alternate read depth - filter dataset bound genotypes by alternate read depth - filter RDD bound genotypes by reference read depth - filter dataset bound genotypes by reference read depth - filter RDD bound genotypes by sample - filter dataset bound genotypes by sample - filter RDD bound genotypes by samples - filter dataset bound genotypes by samples - filter RDD bound no call genotypes - filter dataset no call genotypes - round trip gVCF END attribute without nested variant annotations rdd bound - round trip gVCF END attribute without nested variant annotations dataset bound - round trip gVCF END attribute with nested variant annotations rdd bound - round trip gVCF END attribute with nested variant annotations dataset bound - transform dataset via java API FragmentDatasetSuite: - don't lose any reads when piping interleaved fastq to sam - don't lose any reads when piping tab5 to sam - don't lose any reads when piping tab6 to sam - use broadcast join to pull down fragments mapped to targets - use right outer broadcast join to pull down fragments mapped to targets - use shuffle join to pull down fragments mapped to targets - use right outer shuffle join to pull down fragments mapped to targets - use left outer shuffle join to pull down fragments mapped to targets - use full outer shuffle join to pull down fragments mapped to targets - use shuffle join with group by to pull down fragments mapped to targets - use right outer shuffle join with group by to pull down fragments mapped to targets - bin quality scores in fragments - union two genomic datasets of fragments together - load parquet to sql, save, re-read from avro - transform fragments to slice genomic dataset - transform fragments to coverage genomic dataset - transform fragments to feature genomic dataset - transform fragments to read genomic dataset - transform fragments to genotype genomic dataset - transform fragments to variant genomic dataset - transform fragments to variant context genomic dataset - paired read names with index sequences in read names can group into fragments - interleaved paired read names with index sequences in read names can group into fragments - interleaved paired read names with index sequences in read names as fragments - transform dataset via java API - dataset and rdd conversion to alignments are equivalent SingleFastqInputFormatSuite: - FASTQ hadoop reader: fastq_sample1.fq->single_fastq_sample1.fq.output - FASTQ hadoop reader: fastq_sample2.fq->single_fastq_sample2.fq.output - FASTQ hadoop reader: fastq_sample3.fq->single_fastq_sample3.fq.output - FASTQ hadoop reader: fastq_sample4.fq->single_fastq_sample4.fq.output VariantContextDatasetSuite: - load a gvcf with a missing info field set to . - union two variant context genomic datasets together - can write, then read in .vcf file - can write as a single file via simple saveAsVcf method, then read in .vcf file - can write as a single file via full saveAsVcf method, then read in .vcf file - transform a vcf file with bad header - read a vcf file with multi-allelic variants to split - support VCFs with +Inf/-Inf float values - support VCFs with `nan` instead of `NaN` float values - don't lose any variants when piping as VCF - pipe works with empty partitions - don't lose any non-default VCF header lines or attributes when piping as VCF - save a file sorted by contig index - save a lexicographically sorted file - save a multiallelic gvcf !!! IGNORED !!! - test metadata - save sharded bgzip vcf - save bgzip vcf as single file - can't save file with non-vcf extension - transform variant contexts to slice genomic dataset - transform variant contexts to coverage genomic dataset - transform variant contexts to feature genomic dataset - transform variant contexts to fragment genomic dataset - transform variant contexts to read genomic dataset - transform variant contexts to genotype genomic dataset - transform variant contexts to variant genomic dataset - save and reload from partitioned parquet - transform dataset via java API ConsensusSuite: - test the insertion of a consensus insertion into a reference - test the insertion of a consensus deletion into a reference - inserting empty consensus returns the reference SequenceDatasetSuite: - create a new sequence genomic dataset - create a new sequence genomic dataset with sequence dictionary - save as parquet - round trip as parquet - save as fasta - save as single file fasta - convert sequences to reads - convert sequences to slices - slice sequences to a maximum length - slice sequences shorter than maximum length - filter sequences by overlapping region - filter sequences failing to overlap region - filter sequences by overlapping regions - filter sequences failing to overlap regions - slice sequences overlapping a smaller region - slice sequences overlapping a larger region - slice sequences failing to overlap a region - slice sequences overlapping smaller regions - slice sequences overlapping larger regions - slice sequences failing to overlap regions AttributeUtilsSuite: - parseTags returns a reasonable set of tagStrings - parseTags works with NumericSequence tagType - empty string is parsed as zero tagStrings - incorrectly formatted tag throws an exception - string tag with a ':' in it is correctly parsed - oq string tag with many ':' in it is correctly parsed - oq string tag with a ',' in it is correctly parsed - if a tag is an array but doesn't define it's format, throw MarkDuplicatesSuite: - single read - reads at different positions - reads at the same position - reads at the same position with clipping - reads on reverse strand - unmapped reads - read pairs - read pairs with fragments - quality scores - read pairs that cross chromosomes - single fragment - fragments at different positions - fragments at the same position - fragments at the same position with clipping - fragments on reverse strand - unmapped fragments - read pairs as fragments - read pairs with fragments as fragments - chimeric fragments - inverse pairs - supplemental reads TranscriptEffectConverterSuite: - parse empty transcript effect - parse empty transcript effect strict validation stringency - parse invalid transcript effect - parse invalid transcript effect strict validation stringency - parse transcript effect - parse empty list VCF ANN attribute - parse empty list VCF ANN attribute strict validation stringency - parse empty string VCF ANN attribute - parse empty string VCF ANN attribute strict validation stringency - parse invalid VCF ANN attribute - parse invalid VCF ANN attribute strict validation stringency - parse VCF ANN attribute with one transcript effect - parse VCF ANN attribute with multiple transcript effects - convert to transcript effect from null VCF ANN attribute in variant context - convert to transcript effect from empty list VCF ANN attribute in variant context - convert to transcript effect from empty list VCF ANN attribute in variant context strict validation stringency - convert to transcript effect from empty string VCF ANN attribute in variant context - convert to transcript effect from empty string VCF ANN attribute in variant context strict validation stringency - convert to transcript effect from invalid VCF ANN attribute in variant context - convert to transcript effect from invalid VCF ANN attribute in variant context strict validation stringency 2019-09-18 10:31:25 WARN TranscriptEffectConverter$:190 - Could not convert VCF INFO reserved key ANN value to TranscriptEffect, caught java.lang.NumberFormatException: For input string: "not a number". - convert to transcript effect from VCF ANN attribute with invalid number in variant context lenient validation stringency 2019-09-18 10:31:25 WARN TranscriptEffectConverter$:190 - Could not convert VCF INFO reserved key ANN value to TranscriptEffect, caught java.lang.NumberFormatException: For input string: "not a number". - convert to transcript effect from VCF ANN attribute with invalid fraction in variant context lenient validation stringency - convert to transcript effect from VCF ANN attribute with invalid number in variant context strict validation stringency - convert to transcript effect from VCF ANN attribute with invalid fraction in variant context strict validation stringency - convert to transcript effect from VCF ANN attribute in variant context different alt allele - convert to transcript effect from VCF ANN attribute in variant context same alt allele - convert to transcript effect from VCF ANN attribute in variant context multiple effects same alt allele - convert transcript effect to VCF ANN attribute value - convert transcript effect with null fields to VCF ANN attribute value 2019-09-18 10:31:25 WARN TranscriptEffectConverter$:190 - Incorrect fractional value ?/2, missing numerator - convert transcript effect with incorrect fractional value to VCF ANN attribute value IndelRealignmentTargetSuite: - checking simple realignment target - creating simple target from read with deletion - creating simple target from read with insertion - joining simple realignment targets on same chr - joining simple realignment targets on different chr throws exception - creating targets from three intersecting reads, same indel - creating targets from three intersecting reads, two different indel - creating targets from two disjoint reads - creating targets for artificial reads: one-by-one - creating targets for artificial reads: all-at-once (merged) - creating indel targets for mason reads - additional indel targets taken from consensus generator NormalizationUtilsSuite: - cannot move an indel left if there are no bases to it's left - move a simple indel to farthest position left until bases run out - move a simple indel to farthest position left, past length of indel - cannot move a left normalized indel in a short tandem repeat - move an indel in a short tandem repeat - move an indel in a short tandem repeat of more than 2 bases, where shift is not an integer multiple of repeated sequence length - moving a simple read with single deletion that cannot shift - shift an indel left by 0 in a cigar - shift an indel left by 1 in a cigar - do not left align a complex read which is already left aligned ReadGroupDictionarySuite: - simple conversion to and from sam read group - sample name must be set - simple equality checks - get samples from read group dictionary - empty read group is empty - merging a dictionary with itself should work - round trip a record with all attributes set RightOuterTreeRegionJoinSuite: - Ensure same reference regions get passed together - Overlapping reference regions InnerShuffleRegionJoinSuite: - Overlapping reference regions - Multiple reference regions do not throw exception FeatureDatasetSuite: - round trip GTF format - save GTF as GFF3 format - save GTF as BED format - save GTF as IntervalList format - save GTF as NarrowPeak format - save GFF3 as GTF format - save GFF3 as BED format - save GFF3 as IntervalList format - save GFF3 as NarrowPeak format - round trip GFF3 format - ignore FASTA sequence in GFF3 file - save BED as GTF format - save BED as GFF3 format - save BED as IntervalList format - save BED as NarrowPeak format - round trip BED6 format - keeps sample metadata - round trip BED12 format - save to UCSC BED format - save IntervalList as GTF format - save IntervalList as GFF3 format - save IntervalList as BED format - save IntervalList as IntervalList format - save IntervalList as NarrowPeak format - round trip IntervalList format - save NarrowPeak as GTF format - save NarrowPeak as GFF3 format - save NarrowPeak as BED format - save NarrowPeak as IntervalList format - save NarrowPeak as NarrowPeak format - round trip NarrowPeak format - sort by reference - sort by reference and feature fields - sort gene features by reference and gene structure - sort transcript features by reference and gene structure - sort exon features by reference and gene structure - sort intron features by reference and gene structure - correctly flatmaps CoverageDataset from FeatureDataset - use broadcast join to pull down features mapped to targets - use right outer broadcast join to pull down features mapped to targets - use shuffle join to pull down features mapped to targets - use right outer shuffle join to pull down features mapped to targets - use left outer shuffle join to pull down features mapped to targets - use full outer shuffle join to pull down features mapped to targets - use shuffle join with group by to pull down features mapped to targets - use right outer shuffle join with group by to pull down features mapped to targets - union two feature rdds together - obtain sequence dictionary contig lengths from header in IntervalList format - don't lose any features when piping as BED format - don't lose any features when piping as GTF format - don't lose any features when piping as GFF3 format - don't lose any features when piping as NarrowPeak format - load parquet to sql, save, re-read from avro - load partitioned parquet to sql, save, re-read from avro 2019-09-18 10:32:03 WARN DatasetBoundSliceDataset:190 - Saving directly as Parquet from SQL. Options other than compression codec are ignored. - transform features to slice genomic dataset - transform features to coverage genomic dataset - transform features to fragment genomic dataset - transform features to read genomic dataset - transform features to genotype genomic dataset - transform features to variant genomic dataset - transform features to variant context genomic dataset - filter RDD bound features by feature type - filter dataset bound features by feature type - filter RDD bound features by feature types - filter dataset bound features by feature types - filter RDD bound features by gene - filter dataset bound features by gene - filter RDD bound features by genes - filter dataset bound features by genes - filter RDD bound features by transcript - filter dataset bound features by transcript - filter RDD bound features by transcripts - filter dataset bound features by transcripts - filter RDD bound features by exon - filter dataset bound features by exon - filter RDD bound features by exons - filter dataset bound features by exons - filter RDD bound features by score - filter dataset bound features by score - filter RDD bound features by parent - filter dataset bound features by parent - filter RDD bound features by parents - filter dataset bound features by parents - filter RDD bound features by attribute - filter dataset bound features by attribute - transform dataset via java API AlphabetSuite: - test size of a case-sensitive alphabet - test apply of a case-sensitive alphabet - test reverse complement of a case-sensitive alphabet - test exact reverse complement of a case-sensitive alphabet - test size of a case-insensitive alphabet - test apply of a case-insensitive alphabet - test reverse complement of a case-insensitive alphabet - test exact reverse complement of a case-insensitive alphabet - DNA alphabet - map unknown bases to N SortedGenomicDatasetSuite: - testing that partition and sort provide correct outputs - testing copartition maintains or adds sort - testing that we don't drop any data on the right side even though it doesn't map to a partition on the left - testing that sorted shuffleRegionJoin matches unsorted - testing that sorted fullOuterShuffleRegionJoin matches unsorted - testing that sorted rightOuterShuffleRegionJoin matches unsorted - testing that sorted leftOuterShuffleRegionJoin matches unsorted - testing that we can persist the sorted knowledge VariantContextConverterSuite: - Convert htsjdk site-only SNV to ADAM - Convert somatic htsjdk site-only SNV to ADAM - Convert htsjdk site-only CNV to ADAM - Convert htsjdk SNV w/ genotypes w/ phase information to ADAM - Convert htsjdk SNV with different variant filters to ADAM - Convert htsjdk SNV with different genotype filters to ADAM - Convert ADAM site-only SNV to htsjdk - Convert ADAM SNV w/ genotypes to htsjdk - Convert ADAM SNV w/ genotypes but bad SB to htsjdk with strict validation 2019-09-18 10:32:24 WARN VariantContextConverter:2300 - Applying annotation extraction function to {"variant": {"referenceName": "1", "start": 0, "end": 1, "names": [], "splitFromMultiAllelic": false, "referenceAllele": "A", "alternateAllele": "T", "quality": null, "filtersApplied": null, "filtersPassed": null, "filtersFailed": [], "annotation": null}, "referenceName": null, "start": null, "end": null, "variantCallingAnnotations": {"filtersApplied": null, "filtersPassed": null, "filtersFailed": [], "downsampled": null, "baseQRankSum": null, "fisherStrandBiasPValue": 3.0, "rmsMapQ": 0.0, "mapq0Reads": 5, "mqRankSum": null, "readPositionRankSum": null, "genotypePriors": [], "genotypePosteriors": [], "vqslod": null, "culprit": null, "attributes": {}}, "sampleId": "NA12878", "sampleDescription": null, "processingDescription": null, "alleles": ["REF", "ALT"], "expectedAlleleDosage": null, "referenceReadDepth": null, "alternateReadDepth": null, "readDepth": null, "minReadDepth": null, "genotypeQuality": null, "genotypeLikelihoods": [], "nonReferenceLikelihoods": [], "strandBiasComponents": [0, 2], "splitFromMultiAllelic": false, "phased": false, "phaseSetId": null, "phaseQuality": null} failed with java.lang.IllegalArgumentException: requirement failed: Illegal strand bias components length. Must be empty or 4. In: {"variant": {"referenceName": "1", "start": 0, "end": 1, "names": [], "splitFromMultiAllelic": false, "referenceAllele": "A", "alternateAllele": "T", "quality": null, "filtersApplied": null, "filtersPassed": null, "filtersFailed": [], "annotation": null}, "referenceName": null, "start": null, "end": null, "variantCallingAnnotations": {"filtersApplied": null, "filtersPassed": null, "filtersFailed": [], "downsampled": null, "baseQRankSum": null, "fisherStrandBiasPValue": 3.0, "rmsMapQ": 0.0, "mapq0Reads": 5, "mqRankSum": null, "readPositionRankSum": null, "genotypePriors": [], "genotypePosteriors": [], "vqslod": null, "culprit": null, "attributes": {}}, "sampleId": "NA12878", "sampleDescription": null, "processingDescription": null, "alleles": ["REF", "ALT"], "expectedAlleleDosage": null, "referenceReadDepth": null, "alternateReadDepth": null, "readDepth": null, "minReadDepth": null, "genotypeQuality": null, "genotypeLikelihoods": [], "nonReferenceLikelihoods": [], "strandBiasComponents": [0, 2], "splitFromMultiAllelic": false, "phased": false, "phaseSetId": null, "phaseQuality": null}. - Convert ADAM SNV w/ genotypes but bad SB to htsjdk with lenient validation - Convert htsjdk multi-allelic sites-only SNVs to ADAM - Convert htsjdk multi-allelic SNVs to ADAM and back to htsjdk - Convert gVCF reference records to ADAM - Convert htsjdk variant context with no IDs to ADAM - Convert htsjdk variant context with one ID to ADAM - Convert htsjdk variant context with multiple IDs to ADAM - Convert ADAM variant context with no names to htsjdk - Convert ADAM variant context with one name to htsjdk - Convert ADAM variant context with multiple names to htsjdk - Convert ADAM variant context with null filters applied to htsjdk - Convert ADAM variant context with no filters applied to htsjdk - Convert ADAM variant context with passing filters to htsjdk - Convert ADAM variant context with failing filters to htsjdk - no phasing set going htsjdk->adam - phased but no phase set info going htsjdk->adam - set phase set and extract going htsjdk->adam - no allelic depth going htsjdk->adam - set allelic depth going htsjdk->adam - no gt read depth going htsjdk->adam - extract gt read depth going htsjdk->adam - no min gt read depth going htsjdk->adam - extract min gt read depth going htsjdk->adam - no genotype quality going htsjdk->adam - extract genotype quality going htsjdk->adam - no phred likelihood going htsjdk->adam - extract phred likelihoods going htsjdk->adam - no strand bias info going htsjdk->adam - extract strand bias info going htsjdk->adam - no filters going htsjdk->adam - filters passed going htsjdk->adam - extract single filter going htsjdk->adam - extract multiple filters going htsjdk->adam - no fisher strand bias going htsjdk->adam - extract fisher strand bias going htsjdk->adam - no rms mapping quality going htsjdk->adam - extract rms mapping quality going htsjdk->adam - no mq0 going htsjdk->adam - extract mq0 going htsjdk->adam - no gt read depth going adam->htsjdk - extract gt read depth going adam->htsjdk - throw iae if missing one component of gt read depth going adam->htsjdk - no depth going adam->htsjdk - extract depth going adam->htsjdk - no min depth going adam->htsjdk - extract min depth going adam->htsjdk - no quality going adam->htsjdk - extract quality going adam->htsjdk - no genotype likelihoods going adam->htsjdk - extract genotype likelihoods going adam->htsjdk - no strand bias going adam->htsjdk - malformed strand bias going adam->htsjdk - extract strand bias going adam->htsjdk - no phasing info going adam->htsjdk - unphased going adam->htsjdk - phased but no ps/pq going adam->htsjdk - phased but no pq going adam->htsjdk - phased but no ps going adam->htsjdk - phased going adam->htsjdk - no filter info going adam->htsjdk - if filters applied, must set passed/failed going adam->htsjdk - filters passed going adam->htsjdk - if filters failed, must set filters failed going adam->htsjdk - single filter failed going adam->htsjdk - multiple filters failed going adam->htsjdk - no fisher strand bias going adam->htsjdk - extract fisher strand bias going adam->htsjdk - no rms mapping quality going adam->htsjdk - extract rms mapping quality going adam->htsjdk - no mapping quality 0 reads going adam->htsjdk - extract mapping quality 0 reads going adam->htsjdk - no names set going htsjdk->adam - single name set going htsjdk->adam - multiple names set going htsjdk->adam - no quality going htsjdk->adam - quality set going htsjdk->adam - no filters applied going htsjdk->adam - filters applied and passed going htsjdk->adam - single filter applied and failed going htsjdk->adam - multiple filters applied and failed going htsjdk->adam - no names set adam->htsjdk - set a single name adam->htsjdk - set multiple names adam->htsjdk - no qual set adam->htsjdk - qual is set adam->htsjdk - no filters applied adam->htsjdk - null filters applied adam->htsjdk - filters passed adam->htsjdk - if filter failed, must have filters adam->htsjdk - single filter failed adam->htsjdk - multiple filters failed adam->htsjdk - no ancestral allele set going htsjdk->adam - ancestral allele set going htsjdk->adam - no dbsnp membership set going htsjdk->adam - dbsnp membership set going htsjdk->adam - no hapmap2 membership set going htsjdk->adam - hapmap2 membership set going htsjdk->adam - no hapmap3 membership set going htsjdk->adam - hapmap3 membership set going htsjdk->adam - no validated set going htsjdk->adam - validated set going htsjdk->adam - no 1000G membership set going htsjdk->adam - 1000G membership set going htsjdk->adam - not somatic going htsjdk->adam - somatic going htsjdk->adam - no allele count going htsjdk->adam - single allele count going htsjdk->adam - multiple allele counts going htsjdk->adam - no allele frequency going htsjdk->adam - single allele frequency going htsjdk->adam - single allele frequency is +Inf going htsjdk->adam - single allele frequency is -Inf going htsjdk->adam - multiple allele frequencies going htsjdk->adam - no CIGAR going htsjdk->adam - single CIGAR going htsjdk->adam - multiple CIGARs going htsjdk->adam - no read depth going htsjdk->adam - single read depth going htsjdk->adam - multiple read depths going htsjdk->adam - no forward read depth going htsjdk->adam - single forward read depth going htsjdk->adam - multiple forward read depths going htsjdk->adam - no reverse read depth going htsjdk->adam - single reverse read depth going htsjdk->adam - multiple reverse read depths going htsjdk->adam - no ancestral allele set adam->htsjdk - ancestral allele set adam->htsjdk - no dbsnp membership set adam->htsjdk - dbsnp membership set adam->htsjdk - no hapmap2 membership set adam->htsjdk - hapmap2 membership set adam->htsjdk - no hapmap3 membership set adam->htsjdk - hapmap3 membership set adam->htsjdk - no validated set adam->htsjdk - validated set adam->htsjdk - no 1000G membership set adam->htsjdk - 1000G membership set adam->htsjdk - no allele count set adam->htsjdk - allele count set adam->htsjdk - no allele frequency set adam->htsjdk - allele frequency set adam->htsjdk - no cigar set adam->htsjdk - cigar set adam->htsjdk - no read depth set adam->htsjdk - read depth set adam->htsjdk - read depth without reference read depth - reference read depth without read depth - no forward read depth set adam->htsjdk - forward read depth set adam->htsjdk - reference forward read depth without forward read depth - forward read depth without reference forward read depth - no reverse read depth set adam->htsjdk - reverse read depth set adam->htsjdk - reference reverse read depth without reverse read depth - reverse read depth without reference reverse read depth - VCF INFO attribute Number=0 Type=Flag adam->htsjdk - VCF INFO attribute Number=4 Type=Flag adam->htsjdk unsupported, strict !!! IGNORED !!! - VCF INFO attribute Number=1 Type=Integer adam->htsjdk - VCF INFO attribute Number=4 Type=Integer adam->htsjdk - VCF INFO attribute Number=A Type=Integer adam->htsjdk - VCF INFO attribute Number=R Type=Integer adam->htsjdk - VCF INFO attribute Number=R Type=String adam->htsjdk - VCF INFO attribute Number=G Type=String adam->htsjdk not supported - VCF INFO attribute Number=0 Type=Flag htsjdk->adam - VCF INFO attribute Number=1 Type=Integer htsjdk->adam - VCF INFO attribute Number=4 Type=Integer htsjdk->adam - VCF INFO attribute Number=4 Type=Float htsjdk->adam - VCF INFO attribute Number=A Type=Integer htsjdk->adam - VCF INFO attribute Number=R Type=Integer htsjdk->adam - VCF INFO attribute Number=R Type=String htsjdk->adam - VCF INFO attribute Number=G Type=String htsjdk->adam not supported - VCF FORMAT attribute Number=0 Type=Flag adam->htsjdk not supported - VCF FORMAT attribute Number=1 Type=Integer adam->htsjdk - VCF FORMAT attribute Number=4 Type=Integer adam->htsjdk - VCF FORMAT attribute Number=A Type=Integer adam->htsjdk - VCF FORMAT attribute Number=R Type=Integer adam->htsjdk - VCF FORMAT attribute Number=R Type=String adam->htsjdk - VCF FORMAT attribute Number=0 Type=Flag htsjdk->adam is not supported - VCF FORMAT attribute Number=1 Type=Integer htsjdk->adam - VCF FORMAT attribute Number=4 Type=Integer htsjdk->adam - VCF FORMAT attribute Number=4 Type=Float htsjdk->adam - VCF FORMAT attribute Number=A Type=Integer htsjdk->adam - VCF FORMAT attribute Number=R Type=Integer htsjdk->adam - VCF FORMAT attribute Number=R Type=String htsjdk->adam - VCF FORMAT attribute Number=G Type=String htsjdk->adam - respect end position for symbolic alts FastqRecordConverterSuite: - test read name suffix and index of pair must match - test parseReadInFastq, read suffix removal - test parseReadInFastq, read metadata removal - test parseReadInFastq, read quality shorter than read length, padded with B - test parseReadInFastq, read quality longer than read length - test parseReadInFastq, no read quality - testing FastqRecordConverter.convertPair with valid input - testing FastqRecordConverter.convertPair with 7-line invalid input - testing FastqRecordConverter.convertPair with invalid input: first read length and qual don't match - testing FastqRecordConverter.convertPair with invalid input: second read length and qual don't match - testing FastqRecordConverter.convertFragment with valid input - testing FastqRecordConverter.convertFragment with another valid input having /1, /2 suffixes - testing FastqRecordConverter.convertFragment with invalid input: different read names - testing FastqRecordConverter.convertRead with valid input - testing FastqRecordConverter.convertRead with valid input: setFirstOfPair set to true - testing FastqRecordConverter.convertRead with valid input: setSecondOfPair set to true - testing FastqRecordConverter.convertRead with valid input: setFirstOfPair and setSecondOfPair both true - testing FastqRecordConverter.convertRead with valid input, no qual, strict - testing FastqRecordConverter.convertRead with valid input, no qual, not strict AttributeSuite: - test SAMTagAndValue parsing - Attributes can be correctly re-encoded as text SAM tags GFF3HeaderWriterSuite: - write gff3 header pragma BinQualitiesSuite: - make a quality score bin - can't have a quality score bin with negative score - can't have a quality score bin with high score below low - can't have a quality score bin with high score above 255 - can't have a quality score bin with score outside - make a quality score bin from a string - quality score bin must have exactly 3 elements - quality score bin must be integers - must define at least one bin - build multiple bins - rewrite quality scores for a read - rewriting quality scores fails if bins overlap - rewriting quality scores fails if base is out of bounds - skip read if qualities are null - rewrite a read IndexedFastaFileSuite: - correctly generates sequence dictionary from .dict file - correctly gets sequence - fails when fai index is not provided 2019-09-18 10:32:25 WARN IndexedFastaFile:190 - Caught exception java.lang.NullPointerException when loading FASTA sequence dictionary. Using empty dictionary instead. - passes when dict is not provided and ValidationStringency = LENIENT SAMRecordConverterSuite: - testing the fields in an alignmentRecord obtained from a mapped samRecord conversion - testing the fields in an alignmentRecord obtained from an unmapped samRecord conversion - '*' quality gets nulled out - don't keep denormalized fields ADAMContextSuite: - ctr is accessible - load from an empty directory - sc.loadParquet should not fail on unmapped reads - sc.loadParquet should not load a file without a type specified - can read a small .SAM file - can read a small .SAM file with a bad header with lenient validation - loading a sam file with a bad header and strict stringency should fail - can read a small .CRAM file - can read a small .SAM with all attribute tag types - can filter a .SAM file based on quality - Can convert to phred - Can convert from phred - Can read a .gtf file - Can read a .bed file - Can read a BED 12 file - Can read a .narrowPeak file - Can read a .interval_list file 2019-09-18 10:32:29 WARN VariantContextConverter:1662 - Saw invalid info field java.lang.IllegalArgumentException: Multivalued flags are not supported for INFO lines: INFO=. Ignoring... 2019-09-18 10:32:29 WARN VariantContextConverter:2169 - Generating field extractor from header line INFO= failed: java.lang.IllegalArgumentException: Multivalue flags are not supported for INFO lines: INFO= - can read a small .vcf file with a validation issue - can read a small .vcf file 2019-09-18 10:32:29 WARN VCFInputFormat:218 - file:/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/2.11.12/test-classes/test.vcf.gz is not splittable, consider using block-compressed gzip (BGZF) - can read a gzipped .vcf file - can read a vcf file with an empty alt - can read a BGZF gzipped .vcf file with .gz file extension - can read a BGZF gzipped .vcf file with .bgz file extension - can read a vcf file with a projection - can read an uncompressed BCFv2.2 file !!! IGNORED !!! - can read a BGZF compressed BCFv2.2 file !!! IGNORED !!! - loadIndexedVcf with 1 ReferenceRegion - loadIndexedVcf with multiple ReferenceRegions - load block compressed interleaved fastq - import records from interleaved FASTQ: 1 - import records from interleaved FASTQ: 2 - import records from interleaved FASTQ: 3 - import records from interleaved FASTQ: 4 - import block compressed single fastq - import records from single ended FASTQ: 1 - import records from single ended FASTQ: 2 - import records from single ended FASTQ: 3 - import records from single ended FASTQ: 4 - filter on load using the filter2 API - saveAsParquet with file path - saveAsParquet with file path, block size, page size - saveAsParquet with save args - read a HLA fasta from GRCh38 - read a gzipped fasta file - read a fasta file with comments, gaps, and translation stops - loadIndexedBam with 1 ReferenceRegion - loadIndexedBam with multiple ReferenceRegions - loadIndexedBam with multiple ReferenceRegions and indexed bams - loadIndexedBam with multiple ReferenceRegions and a directory of indexed bams - loadIndexedBam should throw exception without an index file - loadIndexedBam should work with indexed file with index naming format .bai - loadIndexedBam glob should throw exception without an index file - loadBam with a glob - loadBam with a directory - load vcf with a glob - load vcf from a directory - load gvcf which contains a multi-allelic row from a directory - load and save gvcf which contains rows without likelihoods - parse annotations for multi-allelic rows - load parquet with globs - bad glob should fail - empty directory should fail - can read a SnpEff-annotated .vcf file - loadAlignments should not fail on single-end and paired-end fastq reads - load queryname sorted sam as fragments - load query grouped sam as fragments - load paired fastq - load paired fastq without cache - load paired fastq as fragments - load paired fastq as fragments without cache - load HTSJDK sequence dictionary - load Bedtools .genome file as sequence dictionary - load Bedtools .genome.txt file as sequence dictionary - load UCSC Genome Browser chromInfo.txt file as sequence dictionary - load unrecognized file extension as sequence dictionary fails - load BED features with Bedtools .genome file as sequence dictionary - load BED features with Bedtools .genome file as sequence dictionary, no matching features - convert program record - load program record from sam file - load alignments from data frame - load features from data frame - load fragments from data frame - load genotypes from data frame with default header lines - load genotypes from data frame with empty header lines - load reads from data frame - load sequences from data frame - load slices from data frame - load variant contexts from data frame with default header lines - load variant contexts from data frame with empty header lines - load variants from data frame with default header lines - load variants from data frame with empty header lines - load alignments with metadata from data frame - load features with metadata from data frame - load fragments with metadata from data frame - load genotypes with metadata from data frame - load variant contexts with metadata from data frame - load variants with metadata from data frame - read a fasta file with short sequences as sequences - read a fasta file with long sequences as sequences - read a fasta file with short sequences as slices - read a fasta file with long sequences as slices CycleCovariateSuite: - compute covariates for an unpaired read on the negative strand - compute covariates for a first-of-pair read on the negative strand - compute covariates for a second-of-pair read on the negative strand - compute covariates for an unpaired read on the positive strand - compute covariates for a first-of-pair read on the positive strand - compute covariates for a second-of-pair read on the positive strand ConsensusGeneratorFromKnownsSuite: - no consensuses for empty target - no consensuses for reads that don't overlap a target - return a consensus for read overlapping a single target RichCigarSuite: - moving 2 bp from a deletion to a match operator - moving 2 bp from a insertion to a match operator - moving 1 base in a two element cigar - move to start of read - process right clipped cigar - process left clipped cigar - process cigar clipped on both ends MDTaggingSuite: - test adding MDTags over boundary - test adding MDTags; reads span full contig - test adding MDTags; reads start inside first fragment - test adding MDTags; reads end inside last fragment - test adding MDTags; reads start inside first fragment and end inside last fragment - test adding MDTags; reads start and end in middle fragements 2019-09-18 10:33:24 WARN BlockManager:66 - Putting block rdd_5_3 failed due to exception java.lang.Exception: Contig chr2 not found in reference map with keys: chr1. 2019-09-18 10:33:24 WARN BlockManager:66 - Block rdd_5_3 could not be removed as it was not found on disk or in memory 2019-09-18 10:33:24 ERROR Executor:91 - Exception in task 3.0 in stage 2.0 (TID 11) java.lang.Exception: Contig chr2 not found in reference map with keys: chr1 at org.bdgenomics.adam.util.ReferenceContigMap$$anonfun$extract$1.apply(ReferenceContigMap.scala:63) at org.bdgenomics.adam.util.ReferenceContigMap$$anonfun$extract$1.apply(ReferenceContigMap.scala:63) at scala.collection.MapLike$class.getOrElse(MapLike.scala:128) at scala.collection.AbstractMap.getOrElse(Map.scala:59) at org.bdgenomics.adam.util.ReferenceContigMap.extract(ReferenceContigMap.scala:61) at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1$$anonfun$apply$2.apply(MDTagging.scala:76) at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1$$anonfun$apply$2.apply(MDTagging.scala:71) at scala.Option$WithFilter.map(Option.scala:207) at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1.apply(MDTagging.scala:71) at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1.apply(MDTagging.scala:69) at scala.collection.Iterator$$anon$11.next(Iterator.scala:410) at org.apache.spark.storage.memory.MemoryStore.putIterator(MemoryStore.scala:222) at org.apache.spark.storage.memory.MemoryStore.putIteratorAsValues(MemoryStore.scala:299) at org.apache.spark.storage.BlockManager$$anonfun$doPutIterator$1.apply(BlockManager.scala:1165) at org.apache.spark.storage.BlockManager$$anonfun$doPutIterator$1.apply(BlockManager.scala:1156) at org.apache.spark.storage.BlockManager.doPut(BlockManager.scala:1091) at org.apache.spark.storage.BlockManager.doPutIterator(BlockManager.scala:1156) at org.apache.spark.storage.BlockManager.getOrElseUpdate(BlockManager.scala:882) at org.apache.spark.rdd.RDD.getOrCompute(RDD.scala:335) at org.apache.spark.rdd.RDD.iterator(RDD.scala:286) at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90) at org.apache.spark.scheduler.Task.run(Task.scala:123) at org.apache.spark.executor.Executor$TaskRunner$$anonfun$10.apply(Executor.scala:408) at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1360) at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:414) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) at java.lang.Thread.run(Thread.java:748) 2019-09-18 10:33:24 WARN TaskSetManager:66 - Lost task 3.0 in stage 2.0 (TID 11, localhost, executor driver): java.lang.Exception: Contig chr2 not found in reference map with keys: chr1 at org.bdgenomics.adam.util.ReferenceContigMap$$anonfun$extract$1.apply(ReferenceContigMap.scala:63) at org.bdgenomics.adam.util.ReferenceContigMap$$anonfun$extract$1.apply(ReferenceContigMap.scala:63) at scala.collection.MapLike$class.getOrElse(MapLike.scala:128) at scala.collection.AbstractMap.getOrElse(Map.scala:59) at org.bdgenomics.adam.util.ReferenceContigMap.extract(ReferenceContigMap.scala:61) at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1$$anonfun$apply$2.apply(MDTagging.scala:76) at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1$$anonfun$apply$2.apply(MDTagging.scala:71) at scala.Option$WithFilter.map(Option.scala:207) at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1.apply(MDTagging.scala:71) at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1.apply(MDTagging.scala:69) at scala.collection.Iterator$$anon$11.next(Iterator.scala:410) at org.apache.spark.storage.memory.MemoryStore.putIterator(MemoryStore.scala:222) at org.apache.spark.storage.memory.MemoryStore.putIteratorAsValues(MemoryStore.scala:299) at org.apache.spark.storage.BlockManager$$anonfun$doPutIterator$1.apply(BlockManager.scala:1165) at org.apache.spark.storage.BlockManager$$anonfun$doPutIterator$1.apply(BlockManager.scala:1156) at org.apache.spark.storage.BlockManager.doPut(BlockManager.scala:1091) at org.apache.spark.storage.BlockManager.doPutIterator(BlockManager.scala:1156) at org.apache.spark.storage.BlockManager.getOrElseUpdate(BlockManager.scala:882) at org.apache.spark.rdd.RDD.getOrCompute(RDD.scala:335) at org.apache.spark.rdd.RDD.iterator(RDD.scala:286) at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90) at org.apache.spark.scheduler.Task.run(Task.scala:123) at org.apache.spark.executor.Executor$TaskRunner$$anonfun$10.apply(Executor.scala:408) at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1360) at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:414) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624) at java.lang.Thread.run(Thread.java:748) 2019-09-18 10:33:24 ERROR TaskSetManager:70 - Task 3 in stage 2.0 failed 1 times; aborting job - try realigning a read on a missing contig, stringency == STRICT 2019-09-18 10:33:25 WARN MDTagging:190 - Caught exception when processing read chr2: java.lang.Exception: Contig chr2 not found in reference map with keys: chr1 - try realigning a read on a missing contig, stringency == LENIENT FileExtensionsSuite: - ends in gzip extension - is a vcf extension PhredUtilsSuite: - convert low phred score to log and back - convert high phred score to log and back - convert overflowing phred score to log and back and clip - convert negative zero log probability to phred and clip - round trip log probabilities ReadDatasetSuite: - create a new read genomic dataset - create a new read genomic dataset with sequence dictionary - save as parquet - round trip as parquet - save as fastq - save as single file fastq - filter read genomic dataset by reference region - broadcast region join reads and features - shuffle region join reads and features - convert reads to alignments - convert reads to sequences - convert reads to slices SmithWatermanSuite: - gather max position from simple scoring matrix - gather max position from irregular scoring matrix - gather max position from irregular scoring matrix with deletions - score simple alignment with constant gap - score irregular scoring matrix - score irregular scoring matrix with indel - can unroll cigars correctly - execute simple trackback - execute trackback with indel - run end to end smith waterman for simple reads - run end to end smith waterman for short sequences with indel - run end to end smith waterman for longer sequences with snp - run end to end smith waterman for longer sequences with short indel - run end to end smith waterman for shorter sequence in longer sequence - run end to end smith waterman for shorter sequence in longer sequence, with indel - smithWaterman - simple alignment MdTagSuite: - null md tag - zero length md tag - md tag with non-digit initial value - md tag invalid base - md tag, pure insertion - md tag, pure insertion, test 2 - md tag pure insertion equality - md tag equality and hashcode - valid md tags - get start of read with no mismatches or deletions - get start of read with no mismatches, but with a deletion at the start - get start of read with mismatches at the start - get end of read with no mismatches or deletions - check that mdtag and rich record return same end - get end of read with no mismatches, but a deletion at end - CIGAR with N operator - CIGAR with multiple N operators - CIGAR with P operators - Get correct matches for mdtag with insertion - Get correct matches for mdtag with mismatches and insertion - Get correct matches for mdtag with insertion between mismatches - Get correct matches for mdtag with intron between mismatches - Get correct matches for mdtag with intron and deletion between mismatches - Throw exception when number of deleted bases in mdtag disagrees with CIGAR - Get correct matches for mdtag with mismatch, insertion and deletion - Get correct matches for mdtag with mismatches, insertion and deletion - Get correct matches for MDTag with mismatches and deletions - Get correct matches base from MDTag and CIGAR with N - get end of read with mismatches and a deletion at end - get correct string out of mdtag with no mismatches - get correct string out of mdtag with mismatches at start - get correct string out of mdtag with deletion at end - get correct string out of mdtag with mismatches at end - get correct string out of complex mdtag - check complex mdtag - get gapped reference - move a cigar alignment by two for a read - rewrite alignment to all matches - rewrite alignment to two mismatches followed by all matches - rewrite alignment to include a deletion but otherwise all matches - rewrite alignment to include an insertion at the start of the read but otherwise all matches - create new md tag from read vs. reference, perfect match - create new md tag from read vs. reference, perfect alignment match, 1 mismatch - create new md tag from read vs. reference, alignment with deletion - create new md tag from read vs. reference, alignment with insert - handle '=' and 'X' operators - CIGAR/MD tag mismatch should cause errors GenomicDatasetSuite: - processing a command that is the spark root directory should return an absolute path - processing a command that is just a single word should do nothing - processing a command should handle arguments that include spaces - processing a command that is a single substitution should succeed - processing a command that is multiple words should split the string - process a command that is multiple words with a replacement - process a command that is multiple words with multiple replacements ParallelFileMergerSuite: - cannot write both empty gzip block and cram eof - buffer size must be non-negative - get the size of several files - block size must be positive and non-zero when trying to merge files - must provide files to merge - if two files are both below the block size, they should merge into one shard - merge two files where one is greater than the block size - merge a sharded sam file - merge a sharded bam file - merge a sharded cram file - can't turn a negative index into a path - generate a path from an index IndelTableSuite: - check for indels in a region with known indels - check for indels in a contig that doesn't exist - check for indels in a region without known indels - build indel table from rdd of variants SnpTableSuite: - create an empty snp table - create a snp table from variants on multiple contigs - create a snp table from a larger set of variants - perform lookups on multi-contig snp table - perform lookups on larger snp table RealignIndelsSuite: - map reads to targets - checking mapping to targets for artificial reads - checking alternative consensus for artificial reads - checking extraction of reference from reads - checking realigned reads for artificial input - checking realigned reads for artificial input with reference file - checking realigned reads for artificial input using knowns - checking realigned reads for artificial input using knowns and reads - skip realigning reads if target is highly covered - skip realignment if target is an insufficient LOD improvement - realign reads to an insertion - test mismatch quality scoring - test mismatch quality scoring for no mismatches - test mismatch quality scoring for offset - test mismatch quality scoring with early exit - test mismatch quality scoring after unpacking read - we shouldn't try to realign a region with no target - we shouldn't try to realign reads with no indel evidence - test OP and OC tags - realign a read with an insertion that goes off the end of the read - if realigning a target doesn't improve the LOD, don't drop reads - extract seq/qual from a read with no clipped bases - extract seq/qual from a read with clipped bases at start - extract seq/qual from a read with clipped bases at end - if unclip is selected, don't drop base when extracting from a read with clipped bases - get cigar and coordinates for read that spans indel, no clipped bases - get cigar and coordinates for read that spans deletion, clipped bases at start - get cigar and coordinates for read that falls wholly before insertion - get cigar and coordinates for read that falls wholly after insertion - get cigar and coordinates for read that falls wholly after deletion - get cigar and coordinates for read that partially spans insertion, no clipped bases - get cigar and coordinates for read that partially spans insertion, clipped bases at end - get cigar and coordinates for read that partially spans insertion, clipped bases both ends BaseQualityRecalibrationSuite: - BQSR Test Input #1 w/ VCF Sites without caching - BQSR Test Input #1 w/ VCF Sites with caching - BQSR Test Input #1 w/ VCF Sites with serialized caching DinucCovariateSuite: - computing dinucleotide pairs for a single base sequence should return (N,N) - compute dinucleotide pairs for a string of all valid bases - compute dinucleotide pairs for a string with an N - compute covariates for a read on the negative strand - compute covariates for a read on the positive strand SequenceDictionarySuite: - Convert from sam sequence record and back - Convert from SAM sequence dictionary file (with extra fields) - merge into existing dictionary - Convert from SAM sequence dictionary and back - Can retrieve sequence by name - SequenceDictionary's with same single element are equal - SequenceDictionary's with same two elements are equals - SequenceDictionary's with different elements are unequal - SequenceDictionaries with same elements in different order are compatible - isCompatible tests equality on overlap - The addition + works correctly - The append operation ++ works correctly - ContainsRefName works correctly for different string types - Apply on name works correctly for different String types - convert from sam sequence record and back - convert from sam sequence dictionary and back - conversion to sam sequence dictionary has correct sort order - load sequence dictionary from VCF file - empty sequence dictionary must be empty - test filter to reference name - test filter to reference names - test filter to reference name by function GenomicPositionPartitionerSuite: - partitions the UNMAPPED ReferencePosition into the top partition - if we do not have a contig for a record, we throw an IAE - partitioning into N pieces on M total sequence length, where N > M, results in M partitions - correctly partitions a single dummy sequence into two pieces - correctly counts cumulative lengths - correctly partitions positions across two dummy sequences - test that we can range partition ADAMRecords - test that we can range partition ADAMRecords indexed by sample - test that simple partitioning works okay on a reasonable set of ADAMRecords - test indexed ReferencePosition partitioning works on a set of indexed ADAMRecords CoverageSuite: - Convert to coverage from valid Feature - Convert to coverage from valid Feature with sampleId - Convert to coverage from Feature with null/empty contigName fails with correct error - Convert to coverage from Feature with no start/end position fails with correct error - Convert to coverage from Feature with no score fails with correct error InnerTreeRegionJoinSuite: - Ensure same reference regions get passed together - Overlapping reference regions - Multiple reference regions do not throw exception RichAlignmentRecordSuite: - Unclipped Start - Unclipped End - tags contains optional fields - read overlap unmapped read - read overlap reference position - read overlap same position different contig VariantDatasetSuite: - union two variant genomic datasets together - round trip to parquet - save and reload from partitioned parquet - use broadcast join to pull down variants mapped to targets - use right outer broadcast join to pull down variants mapped to targets - use shuffle join to pull down variants mapped to targets - use right outer shuffle join to pull down variants mapped to targets - use left outer shuffle join to pull down variants mapped to targets - use full outer shuffle join to pull down variants mapped to targets - use shuffle join with group by to pull down variants mapped to targets - use right outer shuffle join with group by to pull down variants mapped to targets - convert back to variant contexts - load parquet to sql, save, re-read from avro 2019-09-18 10:34:44 WARN DatasetBoundSliceDataset:190 - Saving directly as Parquet from SQL. Options other than compression codec are ignored. - transform variants to slice genomic dataset - transform variants to coverage genomic dataset - transform variants to feature genomic dataset - transform variants to fragment genomic dataset - transform variants to read genomic dataset - transform variants to genotype genomic dataset - transform variants to variant context genomic dataset - filter RDD bound variants to filters passed - filter dataset bound variants to filters passed - filter RDD bound variants by quality - filter dataset bound variants by quality - filter RDD bound variants by read depth - filter dataset bound variants by read depth - filter RDD bound variants by reference read depth - filter dataset bound variants by reference read depth - filter RDD bound single nucleotide variants - filter dataset bound single nucleotide variants - filter RDD bound multiple nucleotide variants - filter dataset bound multiple nucleotide variants - filter RDD bound indel variants - filter dataset bound indel variants - filter RDD bound variants to single nucleotide variants - filter dataset bound variants to single nucleotide variants - filter RDD bound variants to multiple nucleotide variants - filter dataset bound variants to multiple nucleotide variants - filter RDD bound variants to indel variants - filter dataset bound variants to indel variants - transform dataset via java API Run completed in 8 minutes, 5 seconds. Total number of tests run: 1175 Suites: completed 68, aborted 0 Tests: succeeded 1175, failed 0, canceled 0, ignored 5, pending 0 All tests passed. [INFO] [INFO] <<< scoverage-maven-plugin:1.1.1:report (default-cli) < [scoverage]test @ adam-core-spark2_2.11 <<< [INFO] [INFO] --- scoverage-maven-plugin:1.1.1:report (default-cli) @ adam-core-spark2_2.11 --- [INFO] [scoverage] Generating cobertura XML report... [INFO] [scoverage] Generating scoverage XML report... [INFO] [scoverage] Generating scoverage HTML report... [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building ADAM_2.11: APIs for Java, Python 0.29.0-SNAPSHOT [INFO] ------------------------------------------------------------------------ [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-apis-spark2_2.11 --- [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-apis-spark2_2.11 --- [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-apis-spark2_2.11 --- [INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/src/main/scala added. [INFO] [INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-apis-spark2_2.11 --- [INFO] Modified 0 of 5 .scala files [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-apis-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/src/main/resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-apis-spark2_2.11 --- [INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/src/main/scala:-1: info: compiling [INFO] Compiling 4 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/target/2.11.12/classes at 1568828110550 [WARNING] warning: there were two feature warnings; re-run with -feature for details [WARNING] one warning found [INFO] prepare-compile in 0 s [INFO] compile in 6 s [INFO] [INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-apis-spark2_2.11 --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-apis-spark2_2.11 --- [INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/src/test/scala added. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-apis-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 2 resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-apis-spark2_2.11 --- [INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/src/test/java:-1: info: compiling [INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/src/test/scala:-1: info: compiling [INFO] Compiling 9 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/target/2.11.12/test-classes at 1568828117492 [INFO] prepare-compile in 0 s [INFO] compile in 4 s [INFO] [INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-apis-spark2_2.11 --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 8 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/target/2.11.12/test-classes [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-apis-spark2_2.11 --- [INFO] Tests are skipped. [INFO] [INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-apis-spark2_2.11 --- Discovery starting. Discovery completed in 198 milliseconds. Run starting. Expected test count is: 10 JavaADAMContextSuite: 2019-09-18 10:35:23 WARN Utils:66 - Your hostname, research-jenkins-worker-09 resolves to a loopback address: 127.0.1.1; using 192.168.10.31 instead (on interface enp4s0f0) 2019-09-18 10:35:23 WARN Utils:66 - Set SPARK_LOCAL_IP if you need to bind to another address 2019-09-18 10:35:23 WARN NativeCodeLoader:62 - Unable to load native-hadoop library for your platform... using builtin-java classes where applicable - can read and write a small .SAM file - loadIndexedBam with multiple ReferenceRegions - can read and write a small .SAM file as fragments - can read and write a small .bed file as features - can read and write a small .bed file as coverage - can read and write a small .vcf as genotypes - can read and write a small .vcf as variants - can read a two bit file 2019-09-18 10:35:34 WARN RDDBoundSequenceDataset:190 - asSingleFile = true ignored when saving as Parquet. - can read and write .fa as sequences 2019-09-18 10:35:35 WARN RDDBoundSliceDataset:190 - asSingleFile = true ignored when saving as Parquet. - can read and write .fa as slices Run completed in 12 seconds, 383 milliseconds. Total number of tests run: 10 Suites: completed 2, aborted 0 Tests: succeeded 10, failed 0, canceled 0, ignored 0, pending 0 All tests passed. [INFO] [INFO] >>> scoverage-maven-plugin:1.1.1:report (default-cli) > [scoverage]test @ adam-apis-spark2_2.11 >>> [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-apis-spark2_2.11 --- [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-apis-spark2_2.11 --- [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-apis-spark2_2.11 --- [INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/src/main/scala added. [INFO] [INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-apis-spark2_2.11 --- [INFO] Modified 0 of 5 .scala files [INFO] [INFO] --- scoverage-maven-plugin:1.1.1:pre-compile (default-cli) @ adam-apis-spark2_2.11 --- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-apis-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/src/main/resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-apis-spark2_2.11 --- [INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/src/main/scala:-1: info: compiling [INFO] Compiling 4 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/target/2.11.12/scoverage-classes at 1568828136008 [INFO] [info] Cleaning datadir [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/target/scoverage-data] [INFO] [info] Beginning coverage instrumentation [INFO] [info] Instrumentation completed [265 statements] [INFO] [info] Wrote instrumentation file [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/target/scoverage-data/scoverage.coverage.xml] [INFO] [info] Will write measurement data to [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/target/scoverage-data] [WARNING] warning: there were two feature warnings; re-run with -feature for details [WARNING] one warning found [INFO] prepare-compile in 0 s [INFO] compile in 6 s [INFO] [INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-apis-spark2_2.11 --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- scoverage-maven-plugin:1.1.1:post-compile (default-cli) @ adam-apis-spark2_2.11 --- [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-apis-spark2_2.11 --- [INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/src/test/scala added. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-apis-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 2 resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-apis-spark2_2.11 --- [INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/src/test/java:-1: info: compiling [INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/src/test/scala:-1: info: compiling [INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/target/generated-test-sources/test-annotations:-1: info: compiling [INFO] Compiling 9 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/target/2.11.12/test-classes at 1568828142380 [INFO] prepare-compile in 0 s [INFO] compile in 4 s [INFO] [INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-apis-spark2_2.11 --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-apis-spark2_2.11 --- [INFO] Tests are skipped. [INFO] [INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-apis-spark2_2.11 --- Discovery starting. Discovery completed in 220 milliseconds. Run starting. Expected test count is: 10 JavaADAMContextSuite: 2019-09-18 10:35:47 WARN Utils:66 - Your hostname, research-jenkins-worker-09 resolves to a loopback address: 127.0.1.1; using 192.168.10.31 instead (on interface enp4s0f0) 2019-09-18 10:35:47 WARN Utils:66 - Set SPARK_LOCAL_IP if you need to bind to another address 2019-09-18 10:35:48 WARN NativeCodeLoader:62 - Unable to load native-hadoop library for your platform... using builtin-java classes where applicable - can read and write a small .SAM file - loadIndexedBam with multiple ReferenceRegions - can read and write a small .SAM file as fragments - can read and write a small .bed file as features - can read and write a small .bed file as coverage - can read and write a small .vcf as genotypes - can read and write a small .vcf as variants - can read a two bit file 2019-09-18 10:35:58 WARN RDDBoundSequenceDataset:190 - asSingleFile = true ignored when saving as Parquet. - can read and write .fa as sequences 2019-09-18 10:35:59 WARN RDDBoundSliceDataset:190 - asSingleFile = true ignored when saving as Parquet. - can read and write .fa as slices Run completed in 12 seconds, 87 milliseconds. Total number of tests run: 10 Suites: completed 2, aborted 0 Tests: succeeded 10, failed 0, canceled 0, ignored 0, pending 0 All tests passed. [INFO] [INFO] <<< scoverage-maven-plugin:1.1.1:report (default-cli) < [scoverage]test @ adam-apis-spark2_2.11 <<< [INFO] [INFO] --- scoverage-maven-plugin:1.1.1:report (default-cli) @ adam-apis-spark2_2.11 --- [INFO] [scoverage] Generating cobertura XML report... [INFO] [scoverage] Generating scoverage XML report... [INFO] [scoverage] Generating scoverage HTML report... [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building ADAM_2.11: CLI 0.29.0-SNAPSHOT [INFO] ------------------------------------------------------------------------ [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-cli-spark2_2.11 --- [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-cli-spark2_2.11 --- [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:timestamp-property (timestamp-property) @ adam-cli-spark2_2.11 --- [INFO] [INFO] --- git-commit-id-plugin:2.2.2:revision (default) @ adam-cli-spark2_2.11 --- [INFO] [INFO] --- templating-maven-plugin:1.0.0:filter-sources (filter-src) @ adam-cli-spark2_2.11 --- [INFO] Coping files with filtering to temporary directory. [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] Copied 1 files to output directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/generated-sources/java-templates [INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/generated-sources/java-templates added. [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-cli-spark2_2.11 --- [INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/src/main/scala added. [INFO] [INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-cli-spark2_2.11 --- [INFO] Modified 0 of 29 .scala files [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-cli-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/src/main/resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-cli-spark2_2.11 --- [INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/generated-sources/java-templates:-1: info: compiling [INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/src/main/scala:-1: info: compiling [INFO] Compiling 18 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/2.11.12/classes at 1568828161123 [WARNING] warning: there was one deprecation warning; re-run with -deprecation for details [WARNING] one warning found [INFO] prepare-compile in 0 s [INFO] compile in 10 s [INFO] [INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-cli-spark2_2.11 --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 1 source file to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/2.11.12/classes [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-cli-spark2_2.11 --- [INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/src/test/scala added. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-cli-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 15 resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-cli-spark2_2.11 --- [INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/src/test/scala:-1: info: compiling [INFO] Compiling 12 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/2.11.12/test-classes at 1568828171417 [INFO] prepare-compile in 0 s [INFO] compile in 7 s [INFO] [INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-cli-spark2_2.11 --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-cli-spark2_2.11 --- [INFO] Tests are skipped. [INFO] [INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-cli-spark2_2.11 --- Discovery starting. Discovery completed in 232 milliseconds. Run starting. Expected test count is: 44 TransformFeaturesSuite: 2019-09-18 10:36:19 WARN Utils:66 - Your hostname, research-jenkins-worker-09 resolves to a loopback address: 127.0.1.1; using 192.168.10.31 instead (on interface enp4s0f0) 2019-09-18 10:36:19 WARN Utils:66 - Set SPARK_LOCAL_IP if you need to bind to another address 2019-09-18 10:36:20 WARN NativeCodeLoader:62 - Unable to load native-hadoop library for your platform... using builtin-java classes where applicable - can convert a simple BED file TransformVariantsSuite: - save a file sorted by contig index - save a lexicographically sorted file ViewSuite: - -f 0 -F 0 is a no-op - no -f or -F args is a no-op - -f 4: only unmapped reads - -F 4: only mapped reads - -f 4 -F 8: unmapped reads with mapped mates - -f 12: unmapped reads with unmapped mates - -g 12: reads that are unmapped or whose mate is unmapped - -F 12: mapped reads with mapped mates - -g 36: unmapped reads or reads with mate on negative strand - -F 36: unmapped reads or reads with mate on negative strand TransformFragmentsSuite: - load queryname sorted sam and save as parquet - cannot sort if not saving as sam 2019-09-18 10:36:34 WARN TransformFragments:190 - If loading and saving as alignments, consider using TransformAlignments instead - load reads as sam and save them sorted - bin quality scores on reads TransformGenotypesSuite: - save a file sorted by contig index - save a lexicographically sorted file - transform VCF without nested annotations - transform VCF with nested annotations AboutSuite: - template variables have been replaced - templated values are not empty CoverageSuite: - correctly calculates coverage from small sam file MergeShardsSuite: - merge shards from unordered sam to unordered sam - unordered sam to ordered sam - merge sharded bam - merge sharded cram TransformAlignmentsSuite: - unordered sam to unordered sam - unordered sam to ordered sam - unordered sam, to adam, to sam - unordered sam, to adam, to ordered sam - put quality scores into bins - run region predicate ADAMMainSuite: - default command groups is non empty - module provides default command groups - inject default command groups when called via main - command groups is empty when called via apply - single command group - add new command group to default command groups - module restores default command groups when called via apply - custom module with single command group - custom module with new command group added to default command groups Adam2FastqSuite: 2019-09-18 10:36:48 WARN RDDBoundAlignmentRecordDataset:190 - Found 16 read names that don't occur exactly twice: 1x: 16 Samples: SRR062634.16445865 SRR062634.9119161 SRR062634.17190076 SRR062634.17969132 SRR062634.7301099 SRR062634.2087100 SRR062634.20911784 SRR062634.16769670 SRR062634.18958430 SRR062634.12099057 SRR062634.12606172 SRR062634.14985224 SRR062634.10448889 SRR062634.4789722 SRR062634.3203184 SRR062634.17698657 - convert SAM to paired FASTQ Run completed in 30 seconds, 529 milliseconds. Total number of tests run: 44 Suites: completed 12, aborted 0 Tests: succeeded 44, failed 0, canceled 0, ignored 0, pending 0 All tests passed. [INFO] [INFO] >>> scoverage-maven-plugin:1.1.1:report (default-cli) > [scoverage]test @ adam-cli-spark2_2.11 >>> [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-cli-spark2_2.11 --- [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-cli-spark2_2.11 --- [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:timestamp-property (timestamp-property) @ adam-cli-spark2_2.11 --- [INFO] [INFO] --- git-commit-id-plugin:2.2.2:revision (default) @ adam-cli-spark2_2.11 --- [INFO] [INFO] --- templating-maven-plugin:1.0.0:filter-sources (filter-src) @ adam-cli-spark2_2.11 --- [INFO] Coping files with filtering to temporary directory. [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] No files needs to be copied to output directory. Up to date: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/generated-sources/java-templates [INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/generated-sources/java-templates added. [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-cli-spark2_2.11 --- [INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/src/main/scala added. [INFO] [INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-cli-spark2_2.11 --- [INFO] Modified 0 of 29 .scala files [INFO] [INFO] --- scoverage-maven-plugin:1.1.1:pre-compile (default-cli) @ adam-cli-spark2_2.11 --- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-cli-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/src/main/resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-cli-spark2_2.11 --- [INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/generated-sources/java-templates:-1: info: compiling [INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/src/main/scala:-1: info: compiling [INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/generated-sources/annotations:-1: info: compiling [INFO] Compiling 18 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/2.11.12/scoverage-classes at 1568828210775 [INFO] [info] Cleaning datadir [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/scoverage-data] [INFO] [info] Beginning coverage instrumentation [INFO] [info] Instrumentation completed [1468 statements] [INFO] [info] Wrote instrumentation file [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/scoverage-data/scoverage.coverage.xml] [INFO] [info] Will write measurement data to [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/scoverage-data] [WARNING] warning: there was one deprecation warning; re-run with -deprecation for details [WARNING] one warning found [INFO] prepare-compile in 0 s [INFO] compile in 10 s [INFO] [INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-cli-spark2_2.11 --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 1 source file to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/2.11.12/scoverage-classes [INFO] [INFO] --- scoverage-maven-plugin:1.1.1:post-compile (default-cli) @ adam-cli-spark2_2.11 --- [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-cli-spark2_2.11 --- [INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/src/test/scala added. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-cli-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 15 resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-cli-spark2_2.11 --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-cli-spark2_2.11 --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-cli-spark2_2.11 --- [INFO] Tests are skipped. [INFO] [INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-cli-spark2_2.11 --- Discovery starting. Discovery completed in 208 milliseconds. Run starting. Expected test count is: 44 TransformFeaturesSuite: 2019-09-18 10:37:02 WARN Utils:66 - Your hostname, research-jenkins-worker-09 resolves to a loopback address: 127.0.1.1; using 192.168.10.31 instead (on interface enp4s0f0) 2019-09-18 10:37:02 WARN Utils:66 - Set SPARK_LOCAL_IP if you need to bind to another address 2019-09-18 10:37:02 WARN NativeCodeLoader:62 - Unable to load native-hadoop library for your platform... using builtin-java classes where applicable - can convert a simple BED file TransformVariantsSuite: - save a file sorted by contig index - save a lexicographically sorted file ViewSuite: - -f 0 -F 0 is a no-op - no -f or -F args is a no-op - -f 4: only unmapped reads - -F 4: only mapped reads - -f 4 -F 8: unmapped reads with mapped mates - -f 12: unmapped reads with unmapped mates - -g 12: reads that are unmapped or whose mate is unmapped - -F 12: mapped reads with mapped mates - -g 36: unmapped reads or reads with mate on negative strand - -F 36: unmapped reads or reads with mate on negative strand TransformFragmentsSuite: - load queryname sorted sam and save as parquet - cannot sort if not saving as sam 2019-09-18 10:37:17 WARN TransformFragments:190 - If loading and saving as alignments, consider using TransformAlignments instead - load reads as sam and save them sorted - bin quality scores on reads TransformGenotypesSuite: - save a file sorted by contig index - save a lexicographically sorted file - transform VCF without nested annotations - transform VCF with nested annotations AboutSuite: - template variables have been replaced - templated values are not empty CoverageSuite: - correctly calculates coverage from small sam file MergeShardsSuite: - merge shards from unordered sam to unordered sam - unordered sam to ordered sam - merge sharded bam - merge sharded cram TransformAlignmentsSuite: - unordered sam to unordered sam - unordered sam to ordered sam - unordered sam, to adam, to sam - unordered sam, to adam, to ordered sam - put quality scores into bins - run region predicate ADAMMainSuite: - default command groups is non empty - module provides default command groups - inject default command groups when called via main - command groups is empty when called via apply - single command group - add new command group to default command groups - module restores default command groups when called via apply - custom module with single command group - custom module with new command group added to default command groups Adam2FastqSuite: 2019-09-18 10:37:30 WARN RDDBoundAlignmentRecordDataset:190 - Found 16 read names that don't occur exactly twice: 1x: 16 Samples: SRR062634.16445865 SRR062634.9119161 SRR062634.17190076 SRR062634.17969132 SRR062634.7301099 SRR062634.2087100 SRR062634.20911784 SRR062634.16769670 SRR062634.18958430 SRR062634.12099057 SRR062634.12606172 SRR062634.14985224 SRR062634.10448889 SRR062634.4789722 SRR062634.3203184 SRR062634.17698657 - convert SAM to paired FASTQ Run completed in 30 seconds, 185 milliseconds. Total number of tests run: 44 Suites: completed 12, aborted 0 Tests: succeeded 44, failed 0, canceled 0, ignored 0, pending 0 All tests passed. [INFO] [INFO] <<< scoverage-maven-plugin:1.1.1:report (default-cli) < [scoverage]test @ adam-cli-spark2_2.11 <<< [INFO] [INFO] --- scoverage-maven-plugin:1.1.1:report (default-cli) @ adam-cli-spark2_2.11 --- [INFO] [scoverage] Generating cobertura XML report... [INFO] [scoverage] Generating scoverage XML report... [INFO] [scoverage] Generating scoverage HTML report... [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building ADAM_2.11: Assembly 0.29.0-SNAPSHOT [INFO] ------------------------------------------------------------------------ [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-assembly-spark2_2.11 --- [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-assembly-spark2_2.11 --- [INFO] [INFO] --- git-commit-id-plugin:2.2.2:revision (default) @ adam-assembly-spark2_2.11 --- [INFO] [INFO] --- templating-maven-plugin:1.0.0:filter-sources (filter-src) @ adam-assembly-spark2_2.11 --- [INFO] Request to add '/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/src/main/java-templates' folder. Not added since it does not exist. [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-assembly-spark2_2.11 --- [INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/src/main/scala added. [INFO] [INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-assembly-spark2_2.11 --- [INFO] Modified 0 of 1 .scala files [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-assembly-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/src/main/resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-assembly-spark2_2.11 --- [INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/src/main/scala:-1: info: compiling [INFO] Compiling 1 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/target/2.11.12/classes at 1568828253597 [INFO] prepare-compile in 0 s [INFO] compile in 2 s [INFO] [INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-assembly-spark2_2.11 --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-assembly-spark2_2.11 --- [INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/src/test/scala added. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-assembly-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/src/test/resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-assembly-spark2_2.11 --- [INFO] No sources to compile [INFO] [INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-assembly-spark2_2.11 --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-assembly-spark2_2.11 --- [INFO] Tests are skipped. [INFO] [INFO] >>> scoverage-maven-plugin:1.1.1:report (default-cli) > [scoverage]test @ adam-assembly-spark2_2.11 >>> [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-assembly-spark2_2.11 --- [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-assembly-spark2_2.11 --- [INFO] [INFO] --- git-commit-id-plugin:2.2.2:revision (default) @ adam-assembly-spark2_2.11 --- [INFO] [INFO] --- templating-maven-plugin:1.0.0:filter-sources (filter-src) @ adam-assembly-spark2_2.11 --- [INFO] Request to add '/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/src/main/java-templates' folder. Not added since it does not exist. [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-assembly-spark2_2.11 --- [INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/src/main/scala added. [INFO] [INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-assembly-spark2_2.11 --- [INFO] Modified 0 of 1 .scala files [INFO] [INFO] --- scoverage-maven-plugin:1.1.1:pre-compile (default-cli) @ adam-assembly-spark2_2.11 --- [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-assembly-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/src/main/resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-assembly-spark2_2.11 --- [INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/src/main/scala:-1: info: compiling [INFO] Compiling 1 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/target/2.11.12/scoverage-classes at 1568828256910 [INFO] [info] Cleaning datadir [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/target/scoverage-data] [INFO] [info] Beginning coverage instrumentation [INFO] [info] Instrumentation completed [0 statements] [INFO] [info] Wrote instrumentation file [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/target/scoverage-data/scoverage.coverage.xml] [INFO] [info] Will write measurement data to [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/target/scoverage-data] [INFO] prepare-compile in 0 s [INFO] compile in 2 s [INFO] [INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-assembly-spark2_2.11 --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- scoverage-maven-plugin:1.1.1:post-compile (default-cli) @ adam-assembly-spark2_2.11 --- [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-assembly-spark2_2.11 --- [INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/src/test/scala added. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-assembly-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/src/test/resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-assembly-spark2_2.11 --- [INFO] No sources to compile [INFO] [INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-assembly-spark2_2.11 --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-assembly-spark2_2.11 --- [INFO] Tests are skipped. [INFO] [INFO] <<< scoverage-maven-plugin:1.1.1:report (default-cli) < [scoverage]test @ adam-assembly-spark2_2.11 <<< [INFO] [INFO] --- scoverage-maven-plugin:1.1.1:report (default-cli) @ adam-assembly-spark2_2.11 --- [INFO] [scoverage] Generating cobertura XML report... [INFO] [scoverage] Generating scoverage XML report... [INFO] [scoverage] Generating scoverage HTML report... [INFO] [scoverage] Generating aggregated cobertura XML report... [INFO] [scoverage] Generating aggregated scoverage XML report... [INFO] [scoverage] Generating aggregated scoverage HTML report... [INFO] ------------------------------------------------------------------------ [INFO] Reactor Summary: [INFO] [INFO] ADAM_2.11 .......................................... SUCCESS [ 13.541 s] [INFO] ADAM_2.11: Shader workaround ....................... SUCCESS [ 5.863 s] [INFO] ADAM_2.11: Avro-to-Dataset codegen utils ........... SUCCESS [ 15.948 s] [INFO] ADAM_2.11: Core .................................... SUCCESS [18:00 min] [INFO] ADAM_2.11: APIs for Java, Python ................... SUCCESS [ 49.785 s] [INFO] ADAM_2.11: CLI ..................................... SUCCESS [01:32 min] [INFO] ADAM_2.11: Assembly ................................ SUCCESS [ 11.845 s] [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ [INFO] Total time: 21:10 min [INFO] Finished at: 2019-09-18T10:37:44-07:00 [INFO] Final Memory: 85M/1462M [INFO] ------------------------------------------------------------------------ # if those pass, build the distribution package mvn -U \ -P distribution \ package \ -DskipTests \ -Dhadoop.version=${HADOOP_VERSION} \ -DargLine=${ADAM_MVN_TMP_DIR} + mvn -U -P distribution package -DskipTests -Dhadoop.version=2.7.5 -DargLine=/tmp/adamTestMvnQOhk7M0 OpenJDK 64-Bit Server VM warning: ignoring option MaxPermSize=1g; support was removed in 8.0 [INFO] Scanning for projects... [INFO] ------------------------------------------------------------------------ [INFO] Reactor Build Order: [INFO] [INFO] ADAM_2.11 [INFO] ADAM_2.11: Shader workaround [INFO] ADAM_2.11: Avro-to-Dataset codegen utils [INFO] ADAM_2.11: Core [INFO] ADAM_2.11: APIs for Java, Python [INFO] ADAM_2.11: CLI [INFO] ADAM_2.11: Assembly [INFO] ADAM_2.11: Distribution [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building ADAM_2.11 0.29.0-SNAPSHOT [INFO] ------------------------------------------------------------------------ [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-parent-spark2_2.11 --- [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-parent-spark2_2.11 --- [INFO] [INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-parent-spark2_2.11 --- [INFO] Modified 0 of 243 .scala files [INFO] [INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-parent-spark2_2.11 --- [INFO] No sources to compile [INFO] [INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-parent-spark2_2.11 --- [INFO] No sources to compile [INFO] [INFO] --- maven-source-plugin:3.0.1:jar-no-fork (attach-sources) @ adam-parent-spark2_2.11 --- [INFO] [INFO] --- maven-javadoc-plugin:3.1.0:jar (attach-javadoc) @ adam-parent-spark2_2.11 --- [INFO] [INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ adam-parent-spark2_2.11 >>> [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-parent-spark2_2.11 --- [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-parent-spark2_2.11 --- [INFO] [INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ adam-parent-spark2_2.11 <<< [INFO] [INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ adam-parent-spark2_2.11 --- [INFO] No source files found [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building ADAM_2.11: Shader workaround 0.29.0-SNAPSHOT [INFO] ------------------------------------------------------------------------ [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-shade-spark2_2.11 --- [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-shade-spark2_2.11 --- [INFO] [INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-shade-spark2_2.11 --- [INFO] Modified 0 of 0 .scala files [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-shade-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/src/main/resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-shade-spark2_2.11 --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-shade-spark2_2.11 --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- plexus-component-metadata:1.5.5:generate-metadata (default) @ adam-shade-spark2_2.11 --- [INFO] Discovered 1 component descriptors(s) [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-shade-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/src/test/resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-shade-spark2_2.11 --- [INFO] No sources to compile [INFO] [INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-shade-spark2_2.11 --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-shade-spark2_2.11 --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.1.2:jar (default-jar) @ adam-shade-spark2_2.11 --- [INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/target/adam-shade-spark2_2.11-0.29.0-SNAPSHOT.jar [INFO] [INFO] --- maven-source-plugin:3.0.1:jar-no-fork (attach-sources) @ adam-shade-spark2_2.11 --- [INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/target/adam-shade-spark2_2.11-0.29.0-SNAPSHOT-sources.jar [INFO] [INFO] --- maven-javadoc-plugin:3.1.0:jar (attach-javadoc) @ adam-shade-spark2_2.11 --- [INFO] Loading source files for package org.bdgenomics.adam.shade... Constructing Javadoc information... Standard Doclet version 1.8.0_222 Building tree for all the packages and classes... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/target/apidocs/org/bdgenomics/adam/shade/ParquetAvroWorkaroundShader.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/target/apidocs/org/bdgenomics/adam/shade/package-frame.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/target/apidocs/org/bdgenomics/adam/shade/package-summary.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/target/apidocs/org/bdgenomics/adam/shade/package-tree.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/target/apidocs/constant-values.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/target/apidocs/org/bdgenomics/adam/shade/class-use/ParquetAvroWorkaroundShader.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/target/apidocs/org/bdgenomics/adam/shade/package-use.html... Building index for all the packages and classes... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/target/apidocs/overview-tree.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/target/apidocs/index-all.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/target/apidocs/deprecated-list.html... Building index for all classes... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/target/apidocs/allclasses-frame.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/target/apidocs/allclasses-noframe.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/target/apidocs/index.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/target/apidocs/help-doc.html... [INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/target/adam-shade-spark2_2.11-0.29.0-SNAPSHOT-javadoc.jar [INFO] [INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ adam-shade-spark2_2.11 >>> [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-shade-spark2_2.11 --- [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-shade-spark2_2.11 --- [INFO] [INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ adam-shade-spark2_2.11 <<< [INFO] [INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ adam-shade-spark2_2.11 --- model contains 6 documentable templates [INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/target/adam-shade-spark2_2.11-0.29.0-SNAPSHOT-javadoc.jar [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building ADAM_2.11: Avro-to-Dataset codegen utils 0.29.0-SNAPSHOT [INFO] ------------------------------------------------------------------------ [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-codegen-spark2_2.11 --- [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-codegen-spark2_2.11 --- [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-codegen-spark2_2.11 --- [INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/src/main/scala added. [INFO] [INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-codegen-spark2_2.11 --- [INFO] Modified 0 of 4 .scala files [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-codegen-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/src/main/resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-codegen-spark2_2.11 --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-codegen-spark2_2.11 --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-codegen-spark2_2.11 --- [INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/src/test/scala added. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-codegen-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/src/test/resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-codegen-spark2_2.11 --- [INFO] No sources to compile [INFO] [INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-codegen-spark2_2.11 --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-codegen-spark2_2.11 --- [INFO] Tests are skipped. [INFO] [INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-codegen-spark2_2.11 --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.1.2:jar (default-jar) @ adam-codegen-spark2_2.11 --- [INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/target/adam-codegen-spark2_2.11-0.29.0-SNAPSHOT.jar [INFO] [INFO] --- maven-source-plugin:3.0.1:jar-no-fork (attach-sources) @ adam-codegen-spark2_2.11 --- [INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/target/adam-codegen-spark2_2.11-0.29.0-SNAPSHOT-sources.jar [INFO] [INFO] --- maven-javadoc-plugin:3.1.0:jar (attach-javadoc) @ adam-codegen-spark2_2.11 --- [INFO] [INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ adam-codegen-spark2_2.11 >>> [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-codegen-spark2_2.11 --- [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-codegen-spark2_2.11 --- [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-codegen-spark2_2.11 --- [INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/src/main/scala added. [INFO] [INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ adam-codegen-spark2_2.11 <<< [INFO] [INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ adam-codegen-spark2_2.11 --- model contains 11 documentable templates [INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/target/adam-codegen-spark2_2.11-0.29.0-SNAPSHOT-javadoc.jar [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building ADAM_2.11: Core 0.29.0-SNAPSHOT [INFO] ------------------------------------------------------------------------ [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-core-spark2_2.11 --- [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-core-spark2_2.11 --- [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-core-spark2_2.11 --- [INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala added. [INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/generated-sources/src/main/scala added. [INFO] [INFO] --- exec-maven-plugin:1.5.0:java (generate-scala-products) @ adam-core-spark2_2.11 --- SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder". SLF4J: Defaulting to no-operation (NOP) logger implementation SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details. [INFO] [INFO] --- exec-maven-plugin:1.5.0:java (generate-scala-projection-fields) @ adam-core-spark2_2.11 --- SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder". SLF4J: Defaulting to no-operation (NOP) logger implementation SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details. [INFO] [INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-core-spark2_2.11 --- [INFO] Modified 2 of 203 .scala files [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-core-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-core-spark2_2.11 --- [INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/java:-1: info: compiling [INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala:-1: info: compiling [INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/generated-sources/src/main/scala:-1: info: compiling [INFO] Compiling 139 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/2.11.12/classes at 1568828290848 [WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicDataset.scala:3099: warning: no valid targets for annotation on value uTag - it is discarded unused. You may specify targets with meta-annotations, e.g. @(transient @getter) [WARNING] @transient val uTag: TypeTag[U] [WARNING] ^ [WARNING] warning: there were 89 deprecation warnings; re-run with -deprecation for details [WARNING] warning: there were 5 feature warnings; re-run with -feature for details [WARNING] three warnings found [INFO] prepare-compile in 0 s [INFO] compile in 31 s [INFO] [INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-core-spark2_2.11 --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-core-spark2_2.11 --- [INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala added. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-core-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 152 resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-core-spark2_2.11 --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-core-spark2_2.11 --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-core-spark2_2.11 --- [INFO] Tests are skipped. [INFO] [INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-core-spark2_2.11 --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.1.2:jar (default-jar) @ adam-core-spark2_2.11 --- [INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/adam-core-spark2_2.11-0.29.0-SNAPSHOT.jar [INFO] [INFO] --- maven-source-plugin:3.0.1:jar-no-fork (attach-sources) @ adam-core-spark2_2.11 --- [INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/adam-core-spark2_2.11-0.29.0-SNAPSHOT-sources.jar [INFO] [INFO] --- maven-javadoc-plugin:3.1.0:jar (attach-javadoc) @ adam-core-spark2_2.11 --- [INFO] The goal 'org.apache.maven.plugins:maven-javadoc-plugin:3.1.0:javadoc' has not been previously called for the module: 'org.bdgenomics.adam:adam-codegen-spark2_2.11:jar:0.29.0-SNAPSHOT'. Trying to invoke it... OpenJDK 64-Bit Server VM warning: ignoring option MaxPermSize=1g; support was removed in 8.0 [WARNING] Creating fake javadoc directory to prevent repeated invocations: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/target/apidocs [ERROR] Error fetching link: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/target/apidocs. Ignored it. [INFO] Loading source files for package org.apache.parquet.avro... Loading source files for package org.bdgenomics.adam.io... Constructing Javadoc information... Standard Doclet version 1.8.0_222 Building tree for all the packages and classes... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/org/apache/parquet/avro/AvroSchemaConverter.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/FastqInputFormat.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/FastqRecordReader.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/InterleavedFastqInputFormat.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/SingleFastqInputFormat.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/overview-frame.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/org/apache/parquet/avro/package-frame.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/org/apache/parquet/avro/package-summary.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/org/apache/parquet/avro/package-tree.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/package-frame.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/package-summary.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/package-tree.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/constant-values.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/org/apache/parquet/avro/class-use/AvroSchemaConverter.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/class-use/SingleFastqInputFormat.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/class-use/FastqInputFormat.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/class-use/InterleavedFastqInputFormat.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/class-use/FastqRecordReader.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/org/apache/parquet/avro/package-use.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/package-use.html... Building index for all the packages and classes... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/overview-tree.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/index-all.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/deprecated-list.html... Building index for all classes... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/allclasses-frame.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/allclasses-noframe.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/index.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/overview-summary.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/help-doc.html... [INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/adam-core-spark2_2.11-0.29.0-SNAPSHOT-javadoc.jar [INFO] [INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ adam-core-spark2_2.11 >>> [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-core-spark2_2.11 --- [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-core-spark2_2.11 --- [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-core-spark2_2.11 --- [INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala added. [INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/generated-sources/src/main/scala added. [INFO] [INFO] --- exec-maven-plugin:1.5.0:java (generate-scala-products) @ adam-core-spark2_2.11 --- SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder". SLF4J: Defaulting to no-operation (NOP) logger implementation SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details. [INFO] [INFO] --- exec-maven-plugin:1.5.0:java (generate-scala-projection-fields) @ adam-core-spark2_2.11 --- SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder". SLF4J: Defaulting to no-operation (NOP) logger implementation SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details. [INFO] [INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ adam-core-spark2_2.11 <<< [INFO] [INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ adam-core-spark2_2.11 --- /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverters.scala:274: warning: discarding unmoored doc comment /** ^ /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentRecordDataset.scala:844: warning: Octal escape literals are deprecated, use \u0001 instead. binaryCodec.writeBytes("BAM\001".getBytes()) ^ /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rich/RichCigar.scala:43: warning: discarding unmoored doc comment /** ^ /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicDataset.scala:3099: warning: no valid targets for annotation on value uTag - it is discarded unused. You may specify targets with meta-annotations, e.g. @(transient @getter) @transient val uTag: TypeTag[U] ^ warning: there were 5 feature warnings; re-run with -feature for details model contains 291 documentable templates /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/util/AttributeUtils.scala:70: warning: Could not find any member to link for "IllegalArgumentException". /** ^ /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/projections/Projection.scala:45: warning: Could not find any member to link for "IllegalArgumentException". /** ^ /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala:1815: warning: Could not find any member to link for "FileNotFoundException". /** ^ /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala:1844: warning: Could not find any member to link for "FileNotFoundException". /** ^ /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala:1864: warning: Could not find any member to link for "FileNotFoundException". /** ^ /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicPartitioners.scala:75: warning: Could not find any member to link for "IllegalArgumentException". /** ^ /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicPartitioners.scala:178: warning: Could not find any member to link for "IllegalArgumentException". /** ^ /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala:474: warning: Could not find any member to link for "IllegalArgumentException". /** ^ /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala:3491: warning: Could not find any member to link for "IllegalArgumentException". /** ^ /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala:429: warning: Could not find any member to link for "IllegalArgumentException". /** ^ /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicDataset.scala:755: warning: Variable x undefined in comment for method pipe in trait GenomicDataset * Files are substituted in to the command with a $x syntax. E.g., to invoke ^ /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicDataset.scala:756: warning: Variable 0 undefined in comment for method pipe in trait GenomicDataset * a command that uses the first file from the files Seq, use $0. To access ^ /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicDataset.scala:757: warning: Variable root undefined in comment for method pipe in trait GenomicDataset * the path to the directory where the files are copied, use $root. ^ /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/models/ReadGroupDictionary.scala:47: warning: Could not find any member to link for "IllegalArgumentException". /** ^ /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/models/Alphabet.scala:44: warning: Could not find any member to link for "IllegalArgumentException". /** ^ /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala:258: warning: Could not find any member to link for "IllegalArgumentException". /** ^ /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala:242: warning: Could not find any member to link for "IllegalArgumentException". /** ^ /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala:444: warning: Could not find any member to link for "IllegalArgumentException". /** ^ /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala:354: warning: Could not find any member to link for "IllegalArgumentException". /** ^ 24 warnings found [INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/adam-core-spark2_2.11-0.29.0-SNAPSHOT-javadoc.jar [INFO] [INFO] --- maven-jar-plugin:3.1.2:test-jar (default) @ adam-core-spark2_2.11 --- [INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/adam-core-spark2_2.11-0.29.0-SNAPSHOT-tests.jar [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building ADAM_2.11: APIs for Java, Python 0.29.0-SNAPSHOT [INFO] ------------------------------------------------------------------------ [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-apis-spark2_2.11 --- [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-apis-spark2_2.11 --- [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-apis-spark2_2.11 --- [INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/src/main/scala added. [INFO] [INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-apis-spark2_2.11 --- [INFO] Modified 0 of 5 .scala files [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-apis-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/src/main/resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-apis-spark2_2.11 --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-apis-spark2_2.11 --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-apis-spark2_2.11 --- [INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/src/test/scala added. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-apis-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 2 resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-apis-spark2_2.11 --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-apis-spark2_2.11 --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-apis-spark2_2.11 --- [INFO] Tests are skipped. [INFO] [INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-apis-spark2_2.11 --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.1.2:jar (default-jar) @ adam-apis-spark2_2.11 --- [INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/target/adam-apis-spark2_2.11-0.29.0-SNAPSHOT.jar [INFO] [INFO] --- maven-source-plugin:3.0.1:jar-no-fork (attach-sources) @ adam-apis-spark2_2.11 --- [INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/target/adam-apis-spark2_2.11-0.29.0-SNAPSHOT-sources.jar [INFO] [INFO] --- maven-javadoc-plugin:3.1.0:jar (attach-javadoc) @ adam-apis-spark2_2.11 --- [INFO] [INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ adam-apis-spark2_2.11 >>> [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-apis-spark2_2.11 --- [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-apis-spark2_2.11 --- [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-apis-spark2_2.11 --- [INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/src/main/scala added. [INFO] [INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ adam-apis-spark2_2.11 <<< [INFO] [INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ adam-apis-spark2_2.11 --- warning: there were two feature warnings; re-run with -feature for details model contains 192 documentable templates one warning found [INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/target/adam-apis-spark2_2.11-0.29.0-SNAPSHOT-javadoc.jar [INFO] [INFO] --- maven-jar-plugin:3.1.2:test-jar (default) @ adam-apis-spark2_2.11 --- [INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/target/adam-apis-spark2_2.11-0.29.0-SNAPSHOT-tests.jar [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building ADAM_2.11: CLI 0.29.0-SNAPSHOT [INFO] ------------------------------------------------------------------------ [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-cli-spark2_2.11 --- [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-cli-spark2_2.11 --- [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:timestamp-property (timestamp-property) @ adam-cli-spark2_2.11 --- [INFO] [INFO] --- git-commit-id-plugin:2.2.2:revision (default) @ adam-cli-spark2_2.11 --- [INFO] [INFO] --- templating-maven-plugin:1.0.0:filter-sources (filter-src) @ adam-cli-spark2_2.11 --- [INFO] Coping files with filtering to temporary directory. [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] No files needs to be copied to output directory. Up to date: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/generated-sources/java-templates [INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/generated-sources/java-templates added. [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-cli-spark2_2.11 --- [INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/src/main/scala added. [INFO] [INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-cli-spark2_2.11 --- [INFO] Modified 0 of 29 .scala files [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-cli-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/src/main/resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-cli-spark2_2.11 --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-cli-spark2_2.11 --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-cli-spark2_2.11 --- [INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/src/test/scala added. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-cli-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 15 resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-cli-spark2_2.11 --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-cli-spark2_2.11 --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-cli-spark2_2.11 --- [INFO] Tests are skipped. [INFO] [INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-cli-spark2_2.11 --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.1.2:jar (default-jar) @ adam-cli-spark2_2.11 --- [INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/adam-cli-spark2_2.11-0.29.0-SNAPSHOT.jar [INFO] [INFO] --- maven-source-plugin:3.0.1:jar-no-fork (attach-sources) @ adam-cli-spark2_2.11 --- [INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/adam-cli-spark2_2.11-0.29.0-SNAPSHOT-sources.jar [INFO] [INFO] --- maven-javadoc-plugin:3.1.0:jar (attach-javadoc) @ adam-cli-spark2_2.11 --- [INFO] The goal 'org.apache.maven.plugins:maven-javadoc-plugin:3.1.0:javadoc' has not been previously called for the module: 'org.bdgenomics.adam:adam-apis-spark2_2.11:jar:0.29.0-SNAPSHOT'. Trying to invoke it... OpenJDK 64-Bit Server VM warning: ignoring option MaxPermSize=1g; support was removed in 8.0 [WARNING] Creating fake javadoc directory to prevent repeated invocations: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/target/apidocs [ERROR] Error fetching link: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/target/apidocs. Ignored it. [INFO] Loading source files for package org.bdgenomics.adam.cli... Constructing Javadoc information... Standard Doclet version 1.8.0_222 Building tree for all the packages and classes... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/apidocs/org/bdgenomics/adam/cli/About.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/apidocs/org/bdgenomics/adam/cli/package-frame.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/apidocs/org/bdgenomics/adam/cli/package-summary.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/apidocs/org/bdgenomics/adam/cli/package-tree.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/apidocs/constant-values.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/apidocs/org/bdgenomics/adam/cli/class-use/About.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/apidocs/org/bdgenomics/adam/cli/package-use.html... Building index for all the packages and classes... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/apidocs/overview-tree.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/apidocs/index-all.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/apidocs/deprecated-list.html... Building index for all classes... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/apidocs/allclasses-frame.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/apidocs/allclasses-noframe.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/apidocs/index.html... Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/apidocs/help-doc.html... [INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/adam-cli-spark2_2.11-0.29.0-SNAPSHOT-javadoc.jar [INFO] [INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ adam-cli-spark2_2.11 >>> [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-cli-spark2_2.11 --- [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-cli-spark2_2.11 --- [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:timestamp-property (timestamp-property) @ adam-cli-spark2_2.11 --- [INFO] [INFO] --- git-commit-id-plugin:2.2.2:revision (default) @ adam-cli-spark2_2.11 --- [INFO] [INFO] --- templating-maven-plugin:1.0.0:filter-sources (filter-src) @ adam-cli-spark2_2.11 --- [INFO] Coping files with filtering to temporary directory. [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] No files needs to be copied to output directory. Up to date: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/generated-sources/java-templates [INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/generated-sources/java-templates added. [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-cli-spark2_2.11 --- [INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/src/main/scala added. [INFO] [INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ adam-cli-spark2_2.11 <<< [INFO] [INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ adam-cli-spark2_2.11 --- model contains 55 documentable templates [INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/adam-cli-spark2_2.11-0.29.0-SNAPSHOT-javadoc.jar [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building ADAM_2.11: Assembly 0.29.0-SNAPSHOT [INFO] ------------------------------------------------------------------------ [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-assembly-spark2_2.11 --- [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-assembly-spark2_2.11 --- [INFO] [INFO] --- git-commit-id-plugin:2.2.2:revision (default) @ adam-assembly-spark2_2.11 --- [INFO] [INFO] --- templating-maven-plugin:1.0.0:filter-sources (filter-src) @ adam-assembly-spark2_2.11 --- [INFO] Request to add '/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/src/main/java-templates' folder. Not added since it does not exist. [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-assembly-spark2_2.11 --- [INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/src/main/scala added. [INFO] [INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-assembly-spark2_2.11 --- [INFO] Modified 0 of 1 .scala files [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-assembly-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/src/main/resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-assembly-spark2_2.11 --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-assembly-spark2_2.11 --- [INFO] Nothing to compile - all classes are up to date [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-assembly-spark2_2.11 --- [INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/src/test/scala added. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-assembly-spark2_2.11 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/src/test/resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-assembly-spark2_2.11 --- [INFO] No sources to compile [INFO] [INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-assembly-spark2_2.11 --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-assembly-spark2_2.11 --- [INFO] Tests are skipped. [INFO] [INFO] --- maven-jar-plugin:3.1.2:jar (default-jar) @ adam-assembly-spark2_2.11 --- [INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/target/adam-assembly-spark2_2.11-0.29.0-SNAPSHOT.jar [INFO] [INFO] --- maven-source-plugin:3.0.1:jar-no-fork (attach-sources) @ adam-assembly-spark2_2.11 --- [INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/target/adam-assembly-spark2_2.11-0.29.0-SNAPSHOT-sources.jar [INFO] [INFO] --- maven-javadoc-plugin:3.1.0:jar (attach-javadoc) @ adam-assembly-spark2_2.11 --- [INFO] [INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ adam-assembly-spark2_2.11 >>> [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-assembly-spark2_2.11 --- [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-assembly-spark2_2.11 --- [INFO] [INFO] --- git-commit-id-plugin:2.2.2:revision (default) @ adam-assembly-spark2_2.11 --- [INFO] [INFO] --- templating-maven-plugin:1.0.0:filter-sources (filter-src) @ adam-assembly-spark2_2.11 --- [INFO] Request to add '/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/src/main/java-templates' folder. Not added since it does not exist. [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-assembly-spark2_2.11 --- [INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/src/main/scala added. [INFO] [INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ adam-assembly-spark2_2.11 <<< [INFO] [INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ adam-assembly-spark2_2.11 --- model contains 6 documentable templates [INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/target/adam-assembly-spark2_2.11-0.29.0-SNAPSHOT-javadoc.jar [INFO] [INFO] --- maven-shade-plugin:3.2.0:shade (default) @ adam-assembly-spark2_2.11 --- [INFO] Including org.bdgenomics.adam:adam-cli-spark2_2.11:jar:0.29.0-SNAPSHOT in the shaded jar. [INFO] Including org.bdgenomics.utils:utils-misc-spark2_2.11:jar:0.2.15 in the shaded jar. [INFO] Including org.bdgenomics.utils:utils-io-spark2_2.11:jar:0.2.15 in the shaded jar. [INFO] Including org.apache.httpcomponents:httpclient:jar:4.5.7 in the shaded jar. [INFO] Including org.apache.httpcomponents:httpcore:jar:4.4.11 in the shaded jar. [INFO] Including commons-logging:commons-logging:jar:1.2 in the shaded jar. [INFO] Including commons-codec:commons-codec:jar:1.11 in the shaded jar. [INFO] Including org.bdgenomics.utils:utils-cli-spark2_2.11:jar:0.2.15 in the shaded jar. [INFO] Including org.clapper:grizzled-slf4j_2.11:jar:1.3.3 in the shaded jar. [INFO] Including org.apache.parquet:parquet-avro:jar:1.10.1 in the shaded jar. [INFO] Including org.apache.parquet:parquet-column:jar:1.10.1 in the shaded jar. [INFO] Including org.apache.parquet:parquet-common:jar:1.10.1 in the shaded jar. [INFO] Including org.apache.parquet:parquet-encoding:jar:1.10.1 in the shaded jar. [INFO] Including org.apache.parquet:parquet-hadoop:jar:1.10.1 in the shaded jar. [INFO] Including org.apache.parquet:parquet-jackson:jar:1.10.1 in the shaded jar. [INFO] Including commons-pool:commons-pool:jar:1.6 in the shaded jar. [INFO] Including org.apache.parquet:parquet-format:jar:2.4.0 in the shaded jar. [INFO] Including org.bdgenomics.utils:utils-metrics-spark2_2.11:jar:0.2.15 in the shaded jar. [INFO] Including com.netflix.servo:servo-core:jar:0.12.25 in the shaded jar. [INFO] Including com.netflix.spectator:spectator-api:jar:0.67.0 in the shaded jar. [INFO] Including org.slf4j:slf4j-api:jar:1.7.25 in the shaded jar. [INFO] Including org.bdgenomics.bdg-formats:bdg-formats:jar:0.14.0 in the shaded jar. [INFO] Including org.apache.avro:avro:jar:1.8.2 in the shaded jar. [INFO] Including org.codehaus.jackson:jackson-core-asl:jar:1.9.13 in the shaded jar. [INFO] Including org.codehaus.jackson:jackson-mapper-asl:jar:1.9.13 in the shaded jar. [INFO] Including com.thoughtworks.paranamer:paranamer:jar:2.8 in the shaded jar. [INFO] Including org.xerial.snappy:snappy-java:jar:1.1.1.3 in the shaded jar. [INFO] Including org.apache.commons:commons-compress:jar:1.8.1 in the shaded jar. [INFO] Including org.tukaani:xz:jar:1.5 in the shaded jar. [INFO] Including org.bdgenomics.adam:adam-core-spark2_2.11:jar:0.29.0-SNAPSHOT in the shaded jar. [INFO] Including org.bdgenomics.utils:utils-intervalrdd-spark2_2.11:jar:0.2.15 in the shaded jar. [INFO] Including com.esotericsoftware.kryo:kryo:jar:2.24.0 in the shaded jar. [INFO] Including com.esotericsoftware.minlog:minlog:jar:1.2 in the shaded jar. [INFO] Including org.objenesis:objenesis:jar:2.1 in the shaded jar. [INFO] Including commons-io:commons-io:jar:2.6 in the shaded jar. [INFO] Including it.unimi.dsi:fastutil:jar:6.6.5 in the shaded jar. [INFO] Including org.seqdoop:hadoop-bam:jar:7.9.2 in the shaded jar. [INFO] Including com.github.jsr203hadoop:jsr203hadoop:jar:1.0.3 in the shaded jar. [INFO] Including com.github.samtools:htsjdk:jar:2.19.0 in the shaded jar. [INFO] Including org.apache.commons:commons-jexl:jar:2.1.1 in the shaded jar. [INFO] Including gov.nih.nlm.ncbi:ngs-java:jar:2.9.0 in the shaded jar. [INFO] Including com.google.guava:guava:jar:27.0-jre in the shaded jar. [INFO] Including com.google.guava:failureaccess:jar:1.0 in the shaded jar. [INFO] Including com.google.guava:listenablefuture:jar:9999.0-empty-to-avoid-conflict-with-guava in the shaded jar. [INFO] Including org.checkerframework:checker-qual:jar:2.5.2 in the shaded jar. [INFO] Including com.google.errorprone:error_prone_annotations:jar:2.2.0 in the shaded jar. [INFO] Including com.google.j2objc:j2objc-annotations:jar:1.1 in the shaded jar. [INFO] Including org.codehaus.mojo:animal-sniffer-annotations:jar:1.17 in the shaded jar. [INFO] Including org.bdgenomics.adam:adam-codegen-spark2_2.11:jar:0.29.0-SNAPSHOT in the shaded jar. [INFO] Including org.bdgenomics.adam:adam-apis-spark2_2.11:jar:0.29.0-SNAPSHOT in the shaded jar. [INFO] Including args4j:args4j:jar:2.33 in the shaded jar. [INFO] Including net.codingwell:scala-guice_2.11:jar:4.2.1 in the shaded jar. [INFO] Including com.google.inject:guice:jar:4.2.0 in the shaded jar. [INFO] Including javax.inject:javax.inject:jar:1 in the shaded jar. [INFO] Including aopalliance:aopalliance:jar:1.0 in the shaded jar. [INFO] Including org.scala-lang:scala-reflect:jar:2.11.12 in the shaded jar. [INFO] Including com.google.code.findbugs:jsr305:jar:1.3.9 in the shaded jar. [WARNING] WORKAROUND: refusing to add class org/apache/parquet/avro/AvroSchemaConverter$2.class from jar /home/jenkins/.m2/repository/org/apache/parquet/parquet-avro/1.10.1/parquet-avro-1.10.1.jar [WARNING] WORKAROUND: refusing to add class org/apache/parquet/avro/AvroSchemaConverter.class from jar /home/jenkins/.m2/repository/org/apache/parquet/parquet-avro/1.10.1/parquet-avro-1.10.1.jar [WARNING] WORKAROUND: refusing to add class org/apache/parquet/avro/AvroSchemaConverter$1.class from jar /home/jenkins/.m2/repository/org/apache/parquet/parquet-avro/1.10.1/parquet-avro-1.10.1.jar [WARNING] guava-27.0-jre.jar, failureaccess-1.0.jar define 2 overlapping classes: [WARNING] - com.google.common.util.concurrent.internal.InternalFutureFailureAccess [WARNING] - com.google.common.util.concurrent.internal.InternalFutures [WARNING] maven-shade-plugin has detected that some class files are [WARNING] present in two or more JARs. When this happens, only one [WARNING] single version of the class is copied to the uber jar. [WARNING] Usually this is not harmful and you can skip these warnings, [WARNING] otherwise try to manually exclude artifacts based on [WARNING] mvn dependency:tree -Ddetail=true and the above output. [WARNING] See http://maven.apache.org/plugins/maven-shade-plugin/ [INFO] Replacing original artifact with shaded artifact. [INFO] Replacing /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/target/adam-assembly-spark2_2.11-0.29.0-SNAPSHOT.jar with /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/target/adam-assembly-spark2_2.11-0.29.0-SNAPSHOT-shaded.jar [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building ADAM_2.11: Distribution 0.29.0-SNAPSHOT [INFO] ------------------------------------------------------------------------ [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-distribution-spark2_2.11 --- [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-distribution-spark2_2.11 --- [INFO] [INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-distribution-spark2_2.11 --- [INFO] Modified 0 of 0 .scala files [INFO] [INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-distribution-spark2_2.11 --- [INFO] No sources to compile [INFO] [INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-distribution-spark2_2.11 --- [INFO] No sources to compile [INFO] [INFO] --- maven-source-plugin:3.0.1:jar-no-fork (attach-sources) @ adam-distribution-spark2_2.11 --- [INFO] [INFO] --- maven-javadoc-plugin:3.1.0:jar (attach-javadoc) @ adam-distribution-spark2_2.11 --- [INFO] [INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ adam-distribution-spark2_2.11 >>> [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-distribution-spark2_2.11 --- [INFO] [INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-distribution-spark2_2.11 --- [INFO] [INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ adam-distribution-spark2_2.11 <<< [INFO] [INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ adam-distribution-spark2_2.11 --- [INFO] No source files found [INFO] [INFO] --- maven-assembly-plugin:3.1.0:single (default) @ adam-distribution-spark2_2.11 --- [INFO] Reading assembly descriptor: src/main/assembly/assembly.xml [INFO] Building tar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-distribution/target/adam-distribution-spark2_2.11-0.29.0-SNAPSHOT-bin.tar.gz [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/smithwaterman/ longer than 100 characters. [WARNING] Resulting tar file can only be processed successfully by GNU compatible tar commands [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/apache/parquet/avro/AvroSchemaConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/consensus/package.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/consensus/ConsensusGenerator$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/consensus/ConsensusGenerator.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/smithwaterman/package.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/smithwaterman/SmithWatermanConstantGapScoring.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/smithwaterman/SmithWaterman.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/AlignmentRecord.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantAnnotation.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantContext$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/AlignmentRecord$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantCallingAnnotations.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/ProcessingStep$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantAnnotation$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantCallingAnnotations$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/TranscriptEffect$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/TranscriptEffect.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/AvroSerializer.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/package.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/ADAMKryoRegistrator.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/InputStreamWithDecoder.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/WritableSerializer.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/instrumentation/package.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/instrumentation/Timers$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/Filter$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/OntologyTermField$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/SampleField$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/VariantCallingAnnotationsField$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FieldEnumeration.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/ReadField$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/ReadGroupField$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/package.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/SliceField$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FragmentField$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/TranscriptEffectField$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FieldValue.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/ReferenceField$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FeatureField$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/VariantAnnotationField$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/GenotypeField$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/Projection$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FieldEnumeration$SchemaVal.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/SequenceField$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/AlignmentRecordField$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/DbxrefField$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/VariantField$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rich/RichAlignmentRecord.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rich/RichAlignmentRecord$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/io/SingleFastqInputFormat.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/io/FastqRecordReader.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/io/FastqInputFormat.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/io/InterleavedFastqInputFormat.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicPositionPartitioner$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/LeftOuterShuffleRegionJoinAndGroupByLeft.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/VictimlessSortedIntervalPartitionJoin.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicDatasetConversion.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicDatasetWithLineage.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/MultisampleGenomicDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/RightOuterTreeRegionJoinAndGroupByRight.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InnerTreeRegionJoinAndGroupByRight.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/RightOuterTreeRegionJoin.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/ShuffleRegionJoin.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/FullOuterShuffleRegionJoin.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/MultisampleAvroGenomicDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GFF3InFormatter$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/NarrowPeakInFormatter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GTFInFormatter$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/RDDBoundCoverageDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/CoverageDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/package.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/NarrowPeakInFormatter$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/BEDInFormatter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/NarrowPeakOutFormatter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/BEDInFormatter$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/FeatureDataset$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GFF3OutFormatter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/DatasetBoundCoverageDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/RDDBoundFeatureDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/FeatureDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/CoverageDataset$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/ParquetUnboundFeatureDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GTFInFormatter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/BEDOutFormatter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GFF3InFormatter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/DatasetBoundFeatureDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/ParquetUnboundCoverageDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GTFOutFormatter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/LeftOuterShuffleRegionJoin.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicRegionPartitioner$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/ParquetUnboundFragmentDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/InterleavedFASTQInFormatter$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/Tab6InFormatter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/package.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/FragmentDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/Tab6InFormatter$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/Tab5InFormatter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/RDDBoundFragmentDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/FragmentDataset$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/DatasetBoundFragmentDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/InterleavedFASTQInFormatter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/Tab5InFormatter$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/ADAMSaveAnyArgs.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/RDDBoundGenotypeDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/ParquetUnboundVariantDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VariantContextDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VariantContextDataset$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VariantDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VCFOutFormatter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/package.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/GenotypeDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/RDDBoundVariantContextDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VCFInFormatter$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/DatasetBoundVariantContextDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/ADAMVCFOutputFormat.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/ParquetUnboundGenotypeDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VariantDataset$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/GenotypeDataset$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VCFInFormatter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/RDDBoundVariantDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/DatasetBoundGenotypeDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/DatasetBoundVariantDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/AvroGenomicDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/RightOuterShuffleRegionJoinAndGroupByLeft.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InFormatterCompanion.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/SortedIntervalPartitionJoinWithVictims.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicBroadcast.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/FASTQInFormatter$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AlignmentRecordDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/InstrumentedADAMCRAMOutputFormat.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/BAMInFormatter$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/InstrumentedADAMSAMOutputFormat.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/SAMInFormatter$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/IncorrectMDTagException.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/DatasetBoundAlignmentRecordDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ReferencePositionPairSerializer.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/QualityScoreBin$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ReadDataset$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/SingleReadBucketSerializer.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMBAMOutputFormatHeaderLess.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/InstrumentedADAMBAMOutputFormatHeaderLess.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ParquetUnboundAlignmentRecordDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/FASTQInFormatter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AnySAMInFormatterCompanion.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AlignmentRecordDataset$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ReadDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AnySAMInFormatter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/DatasetBoundReadDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/RDDBoundReadDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/QualityScoreBin.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/InstrumentedADAMBAMOutputFormat.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AnySAMOutFormatter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/BAMInFormatter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/RDDBoundAlignmentRecordDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/InstrumentedADAMCRAMOutputFormatHeaderLess.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMCRAMOutputFormat.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/SAMInFormatter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ParquetUnboundReadDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMSAMOutputFormatHeaderLess.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/InstrumentedADAMSAMOutputFormatHeaderLess.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMSAMOutputFormat.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMBAMOutputFormat.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMCRAMOutputFormatHeaderLess.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenericGenomicDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenericConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicPositionPartitioner.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InnerShuffleRegionJoin.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/RDDBoundGenericGenomicDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/DatasetBoundGenomicDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicRegionPartitioner.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/DatasetBoundGenericGenomicDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InnerShuffleRegionJoinAndGroupByLeft.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/ReferencePartitioner.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/AvroReadGroupGenomicDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/SequenceDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/package.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/SequenceDataset$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/DatasetBoundSliceDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/SliceDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/ParquetUnboundSequenceDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/FASTAInFormatter$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/RDDBoundSliceDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/FASTAInFormatter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/DatasetBoundSequenceDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/SliceDataset$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/ParquetUnboundSliceDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/RDDBoundSequenceDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InnerTreeRegionJoin.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ParquetFileTraversable.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/AttributeUtils$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/FileExtensions$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ParquetLogger$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ReferenceContigMap$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ReferenceContigMap.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ReferenceContigMapSerializer.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/GenomeFileReader$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/SequenceDictionaryReader$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/IndexedFastaFile.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/TextRddWriter$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/TwoBitFileSerializer.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/converters/AlignmentRecordConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/converters/VariantContextConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/converters/DefaultHeaderLines$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/converters/VariantContextConverter$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/PositionOrdering$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/SequenceDictionary.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferenceRegion$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferenceOrdering.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/SequenceRecord$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/TagType$$TypeVal.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/SequenceDictionary$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferenceRegion.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferencePosition$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/VariantContext$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/VariantContext.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/OptionalRegionOrdering$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferenceRegionSerializer.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/RegionOrdering$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/SequenceRecord.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/OptionalPositionOrdering$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReadGroupDictionary$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferencePositionSerializer.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/VariantContextSerializer.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/OptionalReferenceOrdering.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferencePosition.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReadGroupDictionary.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/javadocs/org/apache/parquet/avro/AvroSchemaConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/javadocs/org/apache/parquet/avro/class-use/AvroSchemaConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/SingleFastqInputFormat.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/FastqRecordReader.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/InterleavedFastqInputFormat.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/class-use/SingleFastqInputFormat.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/class-use/FastqRecordReader.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/class-use/FastqInputFormat.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/class-use/InterleavedFastqInputFormat.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/python/DataFrameConversionWrapper.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToCoverageDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToCoverageConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToSequencesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToGenotypesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToAlignmentRecordsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToReadsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToVariantsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToVariantContextsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToSequencesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToVariantContextConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToFeaturesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToSlicesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToVariantsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToSlicesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToVariantContextsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToSlicesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToSlicesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToSequencesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToAlignmentRecordsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToFragmentsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToSequencesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToVariantsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToGenotypesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToFragmentsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToFragmentsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToVariantContextConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToSlicesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToFragmentsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToAlignmentRecordsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToSequenceDatasetConversion.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToSlicesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToGenotypesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToReadsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToGenotypesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToSequencesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToFragmentsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToCoverageConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToAlignmentRecordDatasetConversion.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToFeaturesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToFeaturesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToSlicesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToReadsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToCoverageConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToGenotypesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToReadsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToAlignmentRecordsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToCoverageDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToReadsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToReadsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToVariantsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToSequencesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/JavaADAMContext$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToGenotypesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToAlignmentRecordsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToSequencesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToCoverageConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToFeaturesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToAlignmentRecordsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToSequencesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToFragmentsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToGenotypesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToFragmentsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToGenotypesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToFragmentsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToFeaturesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToVariantsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToAlignmentRecordsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToFeaturesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToReadsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToReadsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToGenotypesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToVariantsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToVariantContextConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToVariantContextsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToSequencesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToSlicesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToReadsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToFeaturesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToFragmentsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToVariantsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToVariantContextConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToVariantsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/JavaADAMContext.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToSlicesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToVariantsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToCoverageDatasetConversion.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToReadsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToSlicesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToReadsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToFeaturesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToAlignmentRecordsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToVariantsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToFragmentsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToVariantsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToReadsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToFeatureDatasetConversion.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToFeaturesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToCoverageDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToAlignmentRecordsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToGenotypesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToVariantsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToFeaturesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToFragmentsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToFragmentDatasetConversion.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToAlignmentRecordsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToVariantContextConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToVariantContextConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToFragmentsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToFragmentsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToCoverageConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToGenotypeDatasetConversion.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToReadsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToFeaturesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToCoverageConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToReadsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToSequencesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToAlignmentRecordsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToReadsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToFeaturesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToGenotypesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToSlicesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToSequencesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToSlicesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToVariantsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToVariantContextConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToFragmentsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToCoverageConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToGenotypesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToReadsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToAlignmentRecordsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToCoverageConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToSlicesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToAlignmentRecordsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToAlignmentRecordsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToGenotypesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToFeaturesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToVariantsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToSequencesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToSequencesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToFeaturesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToFeaturesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToCoverageDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToAlignmentRecordsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToFeaturesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToSequencesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToGenotypesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToSequencesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToFeaturesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToSequencesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToFragmentsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToFragmentsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToFeatureConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToVariantsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToGenotypesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToVariantContextDatasetConversion.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToSlicesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToFragmentsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToReadsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToVariantsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToAlignmentRecordsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToSlicesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToSequencesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToSlicesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToAlignmentRecordsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToGenotypesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToCoverageDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToGenotypesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToCoverageDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToFragmentsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToCoverageDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToAlignmentRecordsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToCoverageConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToVariantsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToSliceDatasetConversion.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToGenotypesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToSlicesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToReadDatasetConversion.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToReadsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToCoverageDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToSlicesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToCoverageConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToVariantDatasetConversion.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToVariantsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToSequencesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFragments$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSlicesArgs.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformGenotypes$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSlices$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFeatures.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFragments.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountSliceKmers$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSequences$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountReadKmersArgs.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFeatures$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformAlignments.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformGenotypes.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/MergeShardsArgs.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFragmentsArgs.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformVariantsArgs.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformVariants$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSequencesArgs.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformGenotypesArgs.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformAlignments$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSlices.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountSliceKmersArgs.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformVariants.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFeaturesArgs.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformAlignmentsArgs.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountSliceKmers.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSequences.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountReadKmers$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/repo/adam-assembly-spark2_2.11-0.29.0-SNAPSHOT-sources.jar longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/repo/adam-assembly-spark2_2.11-0.29.0-SNAPSHOT-javadoc.jar longer than 100 characters. [INFO] Building tar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-distribution/target/adam-distribution-spark2_2.11-0.29.0-SNAPSHOT-bin.tar.bz2 [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/smithwaterman/ longer than 100 characters. [WARNING] Resulting tar file can only be processed successfully by GNU compatible tar commands [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/apache/parquet/avro/AvroSchemaConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/consensus/package.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/consensus/ConsensusGenerator$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/consensus/ConsensusGenerator.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/smithwaterman/package.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/smithwaterman/SmithWatermanConstantGapScoring.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/smithwaterman/SmithWaterman.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/AlignmentRecord.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantAnnotation.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantContext$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/AlignmentRecord$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantCallingAnnotations.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/ProcessingStep$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantAnnotation$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantCallingAnnotations$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/TranscriptEffect$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/TranscriptEffect.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/AvroSerializer.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/package.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/ADAMKryoRegistrator.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/InputStreamWithDecoder.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/WritableSerializer.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/instrumentation/package.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/instrumentation/Timers$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/Filter$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/OntologyTermField$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/SampleField$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/VariantCallingAnnotationsField$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FieldEnumeration.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/ReadField$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/ReadGroupField$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/package.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/SliceField$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FragmentField$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/TranscriptEffectField$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FieldValue.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/ReferenceField$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FeatureField$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/VariantAnnotationField$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/GenotypeField$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/Projection$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FieldEnumeration$SchemaVal.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/SequenceField$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/AlignmentRecordField$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/DbxrefField$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/VariantField$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rich/RichAlignmentRecord.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rich/RichAlignmentRecord$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/io/SingleFastqInputFormat.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/io/FastqRecordReader.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/io/FastqInputFormat.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/io/InterleavedFastqInputFormat.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicPositionPartitioner$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/LeftOuterShuffleRegionJoinAndGroupByLeft.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/VictimlessSortedIntervalPartitionJoin.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicDatasetConversion.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicDatasetWithLineage.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/MultisampleGenomicDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/RightOuterTreeRegionJoinAndGroupByRight.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InnerTreeRegionJoinAndGroupByRight.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/RightOuterTreeRegionJoin.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/ShuffleRegionJoin.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/FullOuterShuffleRegionJoin.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/MultisampleAvroGenomicDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GFF3InFormatter$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/NarrowPeakInFormatter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GTFInFormatter$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/RDDBoundCoverageDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/CoverageDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/package.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/NarrowPeakInFormatter$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/BEDInFormatter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/NarrowPeakOutFormatter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/BEDInFormatter$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/FeatureDataset$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GFF3OutFormatter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/DatasetBoundCoverageDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/RDDBoundFeatureDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/FeatureDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/CoverageDataset$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/ParquetUnboundFeatureDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GTFInFormatter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/BEDOutFormatter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GFF3InFormatter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/DatasetBoundFeatureDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/ParquetUnboundCoverageDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GTFOutFormatter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/LeftOuterShuffleRegionJoin.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicRegionPartitioner$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/ParquetUnboundFragmentDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/InterleavedFASTQInFormatter$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/Tab6InFormatter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/package.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/FragmentDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/Tab6InFormatter$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/Tab5InFormatter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/RDDBoundFragmentDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/FragmentDataset$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/DatasetBoundFragmentDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/InterleavedFASTQInFormatter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/Tab5InFormatter$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/ADAMSaveAnyArgs.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/RDDBoundGenotypeDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/ParquetUnboundVariantDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VariantContextDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VariantContextDataset$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VariantDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VCFOutFormatter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/package.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/GenotypeDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/RDDBoundVariantContextDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VCFInFormatter$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/DatasetBoundVariantContextDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/ADAMVCFOutputFormat.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/ParquetUnboundGenotypeDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VariantDataset$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/GenotypeDataset$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VCFInFormatter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/RDDBoundVariantDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/DatasetBoundGenotypeDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/DatasetBoundVariantDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/AvroGenomicDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/RightOuterShuffleRegionJoinAndGroupByLeft.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InFormatterCompanion.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/SortedIntervalPartitionJoinWithVictims.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicBroadcast.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/FASTQInFormatter$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AlignmentRecordDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/InstrumentedADAMCRAMOutputFormat.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/BAMInFormatter$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/InstrumentedADAMSAMOutputFormat.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/SAMInFormatter$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/IncorrectMDTagException.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/DatasetBoundAlignmentRecordDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ReferencePositionPairSerializer.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/QualityScoreBin$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ReadDataset$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/SingleReadBucketSerializer.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMBAMOutputFormatHeaderLess.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/InstrumentedADAMBAMOutputFormatHeaderLess.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ParquetUnboundAlignmentRecordDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/FASTQInFormatter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AnySAMInFormatterCompanion.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AlignmentRecordDataset$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ReadDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AnySAMInFormatter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/DatasetBoundReadDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/RDDBoundReadDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/QualityScoreBin.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/InstrumentedADAMBAMOutputFormat.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AnySAMOutFormatter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/BAMInFormatter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/RDDBoundAlignmentRecordDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/InstrumentedADAMCRAMOutputFormatHeaderLess.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMCRAMOutputFormat.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/SAMInFormatter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ParquetUnboundReadDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMSAMOutputFormatHeaderLess.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/InstrumentedADAMSAMOutputFormatHeaderLess.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMSAMOutputFormat.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMBAMOutputFormat.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMCRAMOutputFormatHeaderLess.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenericGenomicDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenericConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicPositionPartitioner.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InnerShuffleRegionJoin.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/RDDBoundGenericGenomicDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/DatasetBoundGenomicDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicRegionPartitioner.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/DatasetBoundGenericGenomicDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InnerShuffleRegionJoinAndGroupByLeft.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/ReferencePartitioner.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/AvroReadGroupGenomicDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/SequenceDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/package.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/SequenceDataset$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/DatasetBoundSliceDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/SliceDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/ParquetUnboundSequenceDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/FASTAInFormatter$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/RDDBoundSliceDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/FASTAInFormatter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/DatasetBoundSequenceDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/SliceDataset$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/ParquetUnboundSliceDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/RDDBoundSequenceDataset.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InnerTreeRegionJoin.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ParquetFileTraversable.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/AttributeUtils$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/FileExtensions$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ParquetLogger$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ReferenceContigMap$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ReferenceContigMap.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ReferenceContigMapSerializer.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/GenomeFileReader$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/SequenceDictionaryReader$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/IndexedFastaFile.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/TextRddWriter$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/TwoBitFileSerializer.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/converters/AlignmentRecordConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/converters/VariantContextConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/converters/DefaultHeaderLines$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/converters/VariantContextConverter$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/PositionOrdering$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/SequenceDictionary.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferenceRegion$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferenceOrdering.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/SequenceRecord$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/TagType$$TypeVal.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/SequenceDictionary$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferenceRegion.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferencePosition$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/VariantContext$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/VariantContext.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/OptionalRegionOrdering$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferenceRegionSerializer.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/RegionOrdering$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/SequenceRecord.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/OptionalPositionOrdering$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReadGroupDictionary$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferencePositionSerializer.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/VariantContextSerializer.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/OptionalReferenceOrdering.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferencePosition.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReadGroupDictionary.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/javadocs/org/apache/parquet/avro/AvroSchemaConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/javadocs/org/apache/parquet/avro/class-use/AvroSchemaConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/SingleFastqInputFormat.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/FastqRecordReader.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/InterleavedFastqInputFormat.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/class-use/SingleFastqInputFormat.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/class-use/FastqRecordReader.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/class-use/FastqInputFormat.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/class-use/InterleavedFastqInputFormat.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/python/DataFrameConversionWrapper.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToCoverageDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToCoverageConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToSequencesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToGenotypesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToAlignmentRecordsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToReadsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToVariantsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToVariantContextsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToSequencesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToVariantContextConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToFeaturesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToSlicesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToVariantsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToSlicesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToVariantContextsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToSlicesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToSlicesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToSequencesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToAlignmentRecordsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToFragmentsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToSequencesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToVariantsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToGenotypesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToFragmentsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToFragmentsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToVariantContextConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToSlicesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToFragmentsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToAlignmentRecordsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToSequenceDatasetConversion.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToSlicesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToGenotypesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToReadsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToGenotypesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToSequencesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToFragmentsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToCoverageConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToAlignmentRecordDatasetConversion.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToFeaturesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToFeaturesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToSlicesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToReadsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToCoverageConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToGenotypesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToReadsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToAlignmentRecordsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToCoverageDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToReadsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToReadsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToVariantsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToSequencesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/JavaADAMContext$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToGenotypesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToAlignmentRecordsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToSequencesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToCoverageConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToFeaturesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToAlignmentRecordsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToSequencesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToFragmentsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToGenotypesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToFragmentsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToGenotypesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToFragmentsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToFeaturesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToVariantsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToAlignmentRecordsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToFeaturesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToReadsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToReadsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToGenotypesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToVariantsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToVariantContextConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToVariantContextsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToSequencesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToSlicesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToReadsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToFeaturesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToFragmentsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToVariantsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToVariantContextConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToVariantsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/JavaADAMContext.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToSlicesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToVariantsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToCoverageDatasetConversion.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToReadsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToSlicesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToReadsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToFeaturesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToAlignmentRecordsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToVariantsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToFragmentsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToVariantsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToReadsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToFeatureDatasetConversion.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToFeaturesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToCoverageDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToAlignmentRecordsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToGenotypesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToVariantsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToFeaturesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToFragmentsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToFragmentDatasetConversion.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToAlignmentRecordsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToVariantContextConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToVariantContextConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToFragmentsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToFragmentsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToCoverageConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToGenotypeDatasetConversion.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToReadsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToFeaturesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToCoverageConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToReadsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToSequencesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToAlignmentRecordsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToReadsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToFeaturesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToGenotypesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToSlicesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToSequencesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToSlicesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToVariantsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToVariantContextConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToFragmentsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToCoverageConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToGenotypesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToReadsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToAlignmentRecordsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToCoverageConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToSlicesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToAlignmentRecordsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToAlignmentRecordsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToGenotypesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToFeaturesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToVariantsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToSequencesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToSequencesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToFeaturesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToFeaturesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToCoverageDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToAlignmentRecordsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToFeaturesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToSequencesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToGenotypesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToSequencesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToFeaturesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToSequencesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToFragmentsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToFragmentsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToFeatureConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToVariantsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToGenotypesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToVariantContextDatasetConversion.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToSlicesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToFragmentsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToReadsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToVariantsConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToAlignmentRecordsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToSlicesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToSequencesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToSlicesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToAlignmentRecordsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToGenotypesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToCoverageDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToGenotypesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToCoverageDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToFragmentsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToCoverageDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToAlignmentRecordsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToCoverageConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToVariantsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToSliceDatasetConversion.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToGenotypesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentRecordsToSlicesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToReadDatasetConversion.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToReadsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToCoverageDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToSlicesDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToCoverageConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToVariantDatasetConversion.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToVariantsDatasetConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToSequencesConverter.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFragments$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSlicesArgs.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformGenotypes$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSlices$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFeatures.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFragments.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountSliceKmers$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSequences$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountReadKmersArgs.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFeatures$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformAlignments.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformGenotypes.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/MergeShardsArgs.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFragmentsArgs.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformVariantsArgs.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformVariants$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSequencesArgs.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformGenotypesArgs.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformAlignments$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSlices.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountSliceKmersArgs.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformVariants.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFeaturesArgs.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformAlignmentsArgs.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountSliceKmers.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSequences.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountReadKmers$.html longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/repo/adam-assembly-spark2_2.11-0.29.0-SNAPSHOT-sources.jar longer than 100 characters. [WARNING] Entry: adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/repo/adam-assembly-spark2_2.11-0.29.0-SNAPSHOT-javadoc.jar longer than 100 characters. [INFO] Building zip: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-distribution/target/adam-distribution-spark2_2.11-0.29.0-SNAPSHOT-bin.zip [INFO] ------------------------------------------------------------------------ [INFO] Reactor Summary: [INFO] [INFO] ADAM_2.11 .......................................... SUCCESS [ 8.544 s] [INFO] ADAM_2.11: Shader workaround ....................... SUCCESS [ 4.581 s] [INFO] ADAM_2.11: Avro-to-Dataset codegen utils ........... SUCCESS [ 3.537 s] [INFO] ADAM_2.11: Core .................................... SUCCESS [01:21 min] [INFO] ADAM_2.11: APIs for Java, Python ................... SUCCESS [ 8.084 s] [INFO] ADAM_2.11: CLI ..................................... SUCCESS [ 22.400 s] [INFO] ADAM_2.11: Assembly ................................ SUCCESS [ 15.180 s] [INFO] ADAM_2.11: Distribution ............................ SUCCESS [ 33.717 s] [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ [INFO] Total time: 02:58 min [INFO] Finished at: 2019-09-18T10:40:44-07:00 [INFO] Final Memory: 60M/1474M [INFO] ------------------------------------------------------------------------ # make sure that the distribution package contains an assembly jar # if no assembly jar is found, this will exit with code 1 and fail the build tar tzvf adam-distribution/target/adam-distribution*-bin.tar.gz | \ grep adam-assembly | \ grep jar | \ grep -v -e sources -e javadoc + grep adam-assembly + tar tzvf adam-distribution/target/adam-distribution-spark2_2.11-0.29.0-SNAPSHOT-bin.tar.gz + grep jar + grep -v -e sources -e javadoc -rw-r--r-- jenkins/jenkins 44526409 2019-09-18 10:40 adam-distribution-spark2_2.11-0.29.0-SNAPSHOT/repo/adam-assembly-spark2_2.11-0.29.0-SNAPSHOT.jar # we are done with maven, so clean up the maven temp dir find ${ADAM_MVN_TMP_DIR} + find /tmp/adamTestMvnQOhk7M0 /tmp/adamTestMvnQOhk7M0 /tmp/adamTestMvnQOhk7M0/TempSuite895334630676160511.2.adam /tmp/adamTestMvnQOhk7M0/TempSuite895334630676160511.2.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite895334630676160511.2.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite895334630676160511.2.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite895334630676160511.2.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite895334630676160511.2.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite895334630676160511.2.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite895334630676160511.2.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite895334630676160511.2.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite895334630676160511.2.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite895334630676160511.2.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite895334630676160511.2.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite895334630676160511.2.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/TempSuite895334630676160511.2.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/TempSuite895334630676160511.2.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite7908030024705127884 /tmp/adamTestMvnQOhk7M0/ordered.sam355791317396047025.sam /tmp/adamTestMvnQOhk7M0/javaAC8556685123915511331 /tmp/adamTestMvnQOhk7M0/javaAC8556685123915511331/testRdd.sequences.adam /tmp/adamTestMvnQOhk7M0/javaAC8556685123915511331/testRdd.sequences.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/javaAC8556685123915511331/testRdd.sequences.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/javaAC8556685123915511331/testRdd.sequences.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/javaAC8556685123915511331/testRdd.sequences.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/javaAC8556685123915511331/testRdd.sequences.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/javaAC8556685123915511331/testRdd.sequences.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/javaAC8556685123915511331/testRdd.sequences.adam/_metadata /tmp/adamTestMvnQOhk7M0/javaAC8556685123915511331/testRdd.sequences.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/javaAC8556685123915511331/testRdd.sequences.adam/_references.avro /tmp/adamTestMvnQOhk7M0/javaAC8556685123915511331/testRdd.sequences.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6938307137327292132 /tmp/adamTestMvnQOhk7M0/TempSuite8440235267256742960 /tmp/adamTestMvnQOhk7M0/7160773368203608269 /tmp/adamTestMvnQOhk7M0/7160773368203608269/.artificial.cram.crc /tmp/adamTestMvnQOhk7M0/7160773368203608269/artificial.cram /tmp/adamTestMvnQOhk7M0/.FeatureDatasetFunctionsSuite5075419229705645541.interval_list.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite3932890834232944806 /tmp/adamTestMvnQOhk7M0/TempSuite8735203111357651238.adam /tmp/adamTestMvnQOhk7M0/TempSuite8735203111357651238.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite8735203111357651238.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite8735203111357651238.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite8735203111357651238.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite8735203111357651238.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite8735203111357651238.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite8735203111357651238.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite8735203111357651238.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite8735203111357651238.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite8735203111357651238.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite8735203111357651238.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite8735203111357651238.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/TempSuite8735203111357651238.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/TempSuite8735203111357651238.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/683602698052171911 /tmp/adamTestMvnQOhk7M0/683602698052171911/.gff3 /tmp/adamTestMvnQOhk7M0/683602698052171911/..gff3.crc /tmp/adamTestMvnQOhk7M0/TempSuite4293669916673067197 /tmp/adamTestMvnQOhk7M0/TempSuite6023586922428410797 /tmp/adamTestMvnQOhk7M0/TempSuite244904310021125809 /tmp/adamTestMvnQOhk7M0/TempSuite170844752421492035 /tmp/adamTestMvnQOhk7M0/TempSuite7541370866122247274.adam /tmp/adamTestMvnQOhk7M0/TempSuite7541370866122247274.adam/part-00000-6a293b36-129f-4f96-bafb-6c3ff0204048-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite7541370866122247274.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite7541370866122247274.adam/.part-00000-6a293b36-129f-4f96-bafb-6c3ff0204048-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite7541370866122247274.adam/part-00001-6a293b36-129f-4f96-bafb-6c3ff0204048-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite7541370866122247274.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite7541370866122247274.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite7541370866122247274.adam/.part-00001-6a293b36-129f-4f96-bafb-6c3ff0204048-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite7541370866122247274.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite7541370866122247274.adam/part-00002-6a293b36-129f-4f96-bafb-6c3ff0204048-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite7541370866122247274.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite7541370866122247274.adam/.part-00002-6a293b36-129f-4f96-bafb-6c3ff0204048-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite7541370866122247274.adam/_header /tmp/adamTestMvnQOhk7M0/TempSuite5982843511726386469 /tmp/adamTestMvnQOhk7M0/9165868741620318281 /tmp/adamTestMvnQOhk7M0/9165868741620318281/sorted-variants.vcf /tmp/adamTestMvnQOhk7M0/9165868741620318281/.sorted-variants.vcf.crc /tmp/adamTestMvnQOhk7M0/TempSuite1787950340309225838 /tmp/adamTestMvnQOhk7M0/TempSuite6920191318908125276 /tmp/adamTestMvnQOhk7M0/TempSuite1944598587986448675.adam /tmp/adamTestMvnQOhk7M0/TempSuite1944598587986448675.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite1944598587986448675.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite1944598587986448675.adam/part-00000-c57dfc47-ae32-4827-9854-71ec93f91af3-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite1944598587986448675.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite1944598587986448675.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite1944598587986448675.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite1944598587986448675.adam/.part-00000-c57dfc47-ae32-4827-9854-71ec93f91af3-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite1944598587986448675.adam/_header /tmp/adamTestMvnQOhk7M0/TempSuite1339496404453287587.adam /tmp/adamTestMvnQOhk7M0/TempSuite1339496404453287587.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite1339496404453287587.adam/part-r-00001.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite1339496404453287587.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite1339496404453287587.adam/part-r-00002.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite1339496404453287587.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite1339496404453287587.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite1339496404453287587.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite1339496404453287587.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite1339496404453287587.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite1339496404453287587.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite1339496404453287587.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite1339496404453287587.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite1339496404453287587.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/TempSuite1339496404453287587.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite1339496404453287587.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite1339496404453287587.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite1339496404453287587.adam/part-r-00003.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite1339496404453287587.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/8911928737621968057 /tmp/adamTestMvnQOhk7M0/8911928737621968057/sorted.sam /tmp/adamTestMvnQOhk7M0/8911928737621968057/.sorted.sam.crc /tmp/adamTestMvnQOhk7M0/TempSuite5620534736613788252 /tmp/adamTestMvnQOhk7M0/TempSuite7414775091708473411 /tmp/adamTestMvnQOhk7M0/TempSuite3675555420534648234.adam /tmp/adamTestMvnQOhk7M0/TempSuite3675555420534648234.adam/.part-00000-d2a9ef33-2f20-4274-b374-7b18f555f2d6-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite3675555420534648234.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite3675555420534648234.adam/part-00000-d2a9ef33-2f20-4274-b374-7b18f555f2d6-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite3675555420534648234.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite3675555420534648234.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite3675555420534648234.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite3675555420534648234.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/TempSuite3675555420534648234.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite3675555420534648234.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite3675555420534648234.adam/_header /tmp/adamTestMvnQOhk7M0/reads125651192842506670077 /tmp/adamTestMvnQOhk7M0/reads125651192842506670077/reads12.sam /tmp/adamTestMvnQOhk7M0/reads125651192842506670077/reads12.sam/part-r-00000.sam /tmp/adamTestMvnQOhk7M0/reads125651192842506670077/reads12.sam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/reads125651192842506670077/reads12.sam/_SUCCESS /tmp/adamTestMvnQOhk7M0/reads125651192842506670077/reads12.sam/.part-r-00000.sam.crc /tmp/adamTestMvnQOhk7M0/TempSuite7096393125072683013.adam /tmp/adamTestMvnQOhk7M0/TempSuite7096393125072683013.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite7096393125072683013.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite7096393125072683013.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite7096393125072683013.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite7096393125072683013.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite7096393125072683013.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite7096393125072683013.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite7096393125072683013.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite7096393125072683013.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite7096393125072683013.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite7096393125072683013.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite7096393125072683013.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/TempSuite7096393125072683013.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/TempSuite7096393125072683013.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite6648105315304141768.adam /tmp/adamTestMvnQOhk7M0/TempSuite6648105315304141768.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite6648105315304141768.adam/part-r-00001.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite6648105315304141768.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite6648105315304141768.adam/part-r-00002.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite6648105315304141768.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite6648105315304141768.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite6648105315304141768.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite6648105315304141768.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite6648105315304141768.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite6648105315304141768.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite6648105315304141768.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite6648105315304141768.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite6648105315304141768.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite6648105315304141768.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite6648105315304141768.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite6648105315304141768.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite6648105315304141768.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/TempSuite6648105315304141768.adam/part-r-00003.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite6648105315304141768.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/TempSuite6648105315304141768.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6458181240436084652 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite5075419229705645541 /tmp/adamTestMvnQOhk7M0/TempSuite7706671918338010194 /tmp/adamTestMvnQOhk7M0/TempSuite8669953637048688424.adam /tmp/adamTestMvnQOhk7M0/TempSuite8669953637048688424.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite8669953637048688424.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite8669953637048688424.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite8669953637048688424.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite8669953637048688424.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite8669953637048688424.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite8669953637048688424.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite8669953637048688424.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite8669953637048688424.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite8669953637048688424.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite8669953637048688424.adam/_header /tmp/adamTestMvnQOhk7M0/TempSuite8669953637048688424.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite737417163278877309 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite4430761566496285368.gff3 /tmp/adamTestMvnQOhk7M0/1530726953056038240 /tmp/adamTestMvnQOhk7M0/1530726953056038240/genotypes.adam /tmp/adamTestMvnQOhk7M0/1530726953056038240/genotypes.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/1530726953056038240/genotypes.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/1530726953056038240/genotypes.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/1530726953056038240/genotypes.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/1530726953056038240/genotypes.adam/._header.crc /tmp/adamTestMvnQOhk7M0/1530726953056038240/genotypes.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/1530726953056038240/genotypes.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/1530726953056038240/genotypes.adam/_metadata /tmp/adamTestMvnQOhk7M0/1530726953056038240/genotypes.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/1530726953056038240/genotypes.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/1530726953056038240/genotypes.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/1530726953056038240/genotypes.adam/_references.avro /tmp/adamTestMvnQOhk7M0/1530726953056038240/genotypes.adam/_header /tmp/adamTestMvnQOhk7M0/1530726953056038240/genotypes.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite1504163183565701495reads12.sam_2 /tmp/adamTestMvnQOhk7M0/TempSuite2997823274969117938.adam /tmp/adamTestMvnQOhk7M0/TempSuite2997823274969117938.adam/part-00000-aed9e5c7-87d2-4fe4-8630-fc491eb6ad67-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite2997823274969117938.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite2997823274969117938.adam/.part-00000-aed9e5c7-87d2-4fe4-8630-fc491eb6ad67-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite2997823274969117938.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite2997823274969117938.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite2997823274969117938.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite2997823274969117938.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/TempSuite2997823274969117938.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite2997823274969117938.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite2997823274969117938.adam/_header /tmp/adamTestMvnQOhk7M0/TempSuite2682899587967386516 /tmp/adamTestMvnQOhk7M0/TempSuite6574876014558882303 /tmp/adamTestMvnQOhk7M0/TempSuite8186308571257270292 /tmp/adamTestMvnQOhk7M0/TempSuite6280606448240310143.adam /tmp/adamTestMvnQOhk7M0/TempSuite6280606448240310143.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite6280606448240310143.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite6280606448240310143.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite6280606448240310143.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite6280606448240310143.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite6280606448240310143.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite6280606448240310143.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite6280606448240310143.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite6280606448240310143.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/TempSuite6280606448240310143.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite6280606448240310143.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite6280606448240310143.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite6280606448240310143.adam/_header /tmp/adamTestMvnQOhk7M0/TempSuite6280606448240310143.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite4198620811673836023 /tmp/adamTestMvnQOhk7M0/TempSuite3199347433714738667.adam /tmp/adamTestMvnQOhk7M0/TempSuite3199347433714738667.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite3199347433714738667.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite3199347433714738667.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite3199347433714738667.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite3199347433714738667.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite3199347433714738667.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite3199347433714738667.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite3199347433714738667.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite3199347433714738667.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/TempSuite3199347433714738667.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite3199347433714738667.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite3199347433714738667.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite3199347433714738667.adam/_header /tmp/adamTestMvnQOhk7M0/TempSuite3199347433714738667.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite825769433156893718 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7093526722100633285.bed /tmp/adamTestMvnQOhk7M0/TempSuite7434240876635398317.bed /tmp/adamTestMvnQOhk7M0/TempSuite7434240876635398317.bed/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite7434240876635398317.bed/.part-00000.crc /tmp/adamTestMvnQOhk7M0/TempSuite7434240876635398317.bed/part-00000 /tmp/adamTestMvnQOhk7M0/TempSuite7434240876635398317.bed/_SUCCESS /tmp/adamTestMvnQOhk7M0/sorted-variants.vcf7345769988296349242.vcf /tmp/adamTestMvnQOhk7M0/TempSuite1420998040780882021 /tmp/adamTestMvnQOhk7M0/hg19.chrM.2bit6859919358279900538.chrM.2bit /tmp/adamTestMvnQOhk7M0/TempSuite5714544587244007874 /tmp/adamTestMvnQOhk7M0/TempSuite4732575680820217066 /tmp/adamTestMvnQOhk7M0/.FeatureDatasetFunctionsSuite8164412303953859811.interval_list.crc /tmp/adamTestMvnQOhk7M0/TempSuite2542037625873056763.adam /tmp/adamTestMvnQOhk7M0/TempSuite2542037625873056763.adam/referenceName=13 /tmp/adamTestMvnQOhk7M0/TempSuite2542037625873056763.adam/referenceName=13/positionBin=0 /tmp/adamTestMvnQOhk7M0/TempSuite2542037625873056763.adam/referenceName=13/positionBin=0/.part-00000-a6401df0-f470-471a-974c-a654c4599ae1.c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite2542037625873056763.adam/referenceName=13/positionBin=0/part-00000-a6401df0-f470-471a-974c-a654c4599ae1.c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite2542037625873056763.adam/referenceName=2 /tmp/adamTestMvnQOhk7M0/TempSuite2542037625873056763.adam/referenceName=2/positionBin=0 /tmp/adamTestMvnQOhk7M0/TempSuite2542037625873056763.adam/referenceName=2/positionBin=0/.part-00000-a6401df0-f470-471a-974c-a654c4599ae1.c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite2542037625873056763.adam/referenceName=2/positionBin=0/part-00000-a6401df0-f470-471a-974c-a654c4599ae1.c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite2542037625873056763.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite2542037625873056763.adam/._partitionedByStartPos.crc /tmp/adamTestMvnQOhk7M0/TempSuite2542037625873056763.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite2542037625873056763.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite2542037625873056763.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite2542037625873056763.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite2542037625873056763.adam/referenceName=1 /tmp/adamTestMvnQOhk7M0/TempSuite2542037625873056763.adam/referenceName=1/positionBin=0 /tmp/adamTestMvnQOhk7M0/TempSuite2542037625873056763.adam/referenceName=1/positionBin=0/.part-00000-a6401df0-f470-471a-974c-a654c4599ae1.c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite2542037625873056763.adam/referenceName=1/positionBin=0/part-00000-a6401df0-f470-471a-974c-a654c4599ae1.c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite2542037625873056763.adam/_header /tmp/adamTestMvnQOhk7M0/TempSuite2542037625873056763.adam/_partitionedByStartPos /tmp/adamTestMvnQOhk7M0/TempSuite5433570203478951913 /tmp/adamTestMvnQOhk7M0/TempSuite2787459132766733592 /tmp/adamTestMvnQOhk7M0/TempSuite2290966841537434597.bed /tmp/adamTestMvnQOhk7M0/TempSuite2290966841537434597.bed/.part-00001.crc /tmp/adamTestMvnQOhk7M0/TempSuite2290966841537434597.bed/.part-00003.crc /tmp/adamTestMvnQOhk7M0/TempSuite2290966841537434597.bed/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite2290966841537434597.bed/part-00003 /tmp/adamTestMvnQOhk7M0/TempSuite2290966841537434597.bed/.part-00000.crc /tmp/adamTestMvnQOhk7M0/TempSuite2290966841537434597.bed/part-00000 /tmp/adamTestMvnQOhk7M0/TempSuite2290966841537434597.bed/part-00002 /tmp/adamTestMvnQOhk7M0/TempSuite2290966841537434597.bed/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite2290966841537434597.bed/part-00001 /tmp/adamTestMvnQOhk7M0/TempSuite2290966841537434597.bed/.part-00002.crc /tmp/adamTestMvnQOhk7M0/TempSuite7637014500878126979 /tmp/adamTestMvnQOhk7M0/TempSuite1503767368666074119 /tmp/adamTestMvnQOhk7M0/TempSuite1667025770223459056 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite5670480282848100275.narrowPeak /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite5670480282848100275.narrowPeak/.part-00001.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite5670480282848100275.narrowPeak/.part-00003.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite5670480282848100275.narrowPeak/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite5670480282848100275.narrowPeak/part-00003 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite5670480282848100275.narrowPeak/.part-00000.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite5670480282848100275.narrowPeak/part-00000 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite5670480282848100275.narrowPeak/part-00002 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite5670480282848100275.narrowPeak/_SUCCESS /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite5670480282848100275.narrowPeak/part-00001 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite5670480282848100275.narrowPeak/.part-00002.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite248811594307020347 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite1465695543337133181 /tmp/adamTestMvnQOhk7M0/TempSuite88551308165395178.sam /tmp/adamTestMvnQOhk7M0/TempSuite88551308165395178.sam/part-r-00000.sam /tmp/adamTestMvnQOhk7M0/TempSuite88551308165395178.sam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite88551308165395178.sam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite88551308165395178.sam/.part-r-00000.sam.crc /tmp/adamTestMvnQOhk7M0/TempSuite2742898313608025604 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite4300455124728556527.narrowPeak /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite4300455124728556527.narrowPeak/.part-00001.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite4300455124728556527.narrowPeak/.part-00003.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite4300455124728556527.narrowPeak/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite4300455124728556527.narrowPeak/part-00003 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite4300455124728556527.narrowPeak/.part-00000.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite4300455124728556527.narrowPeak/part-00000 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite4300455124728556527.narrowPeak/part-00002 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite4300455124728556527.narrowPeak/_SUCCESS /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite4300455124728556527.narrowPeak/part-00001 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite4300455124728556527.narrowPeak/.part-00002.crc /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite845189489821947224 /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite4697577024388988579.adam /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite4697577024388988579.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite4697577024388988579.adam/part-r-00001.gz.parquet /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite4697577024388988579.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite4697577024388988579.adam/part-r-00002.gz.parquet /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite4697577024388988579.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite4697577024388988579.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite4697577024388988579.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite4697577024388988579.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite4697577024388988579.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite4697577024388988579.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite4697577024388988579.adam/_metadata /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite4697577024388988579.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite4697577024388988579.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite4697577024388988579.adam/_references.avro /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite4697577024388988579.adam/part-r-00003.gz.parquet /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite4697577024388988579.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/6374788815212383641 /tmp/adamTestMvnQOhk7M0/6374788815212383641/unordered.sam /tmp/adamTestMvnQOhk7M0/6374788815212383641/.unordered.sam.crc /tmp/adamTestMvnQOhk7M0/TempSuite7581810835059914347 /tmp/adamTestMvnQOhk7M0/.FeatureDatasetFunctionsSuite8415179267210657499.narrowPeak.crc /tmp/adamTestMvnQOhk7M0/TempSuite1503767368666074119.fa /tmp/adamTestMvnQOhk7M0/TempSuite1503767368666074119.fa/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite1503767368666074119.fa/.part-00000.crc /tmp/adamTestMvnQOhk7M0/TempSuite1503767368666074119.fa/part-00000 /tmp/adamTestMvnQOhk7M0/TempSuite1503767368666074119.fa/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite6161034472076696468 /tmp/adamTestMvnQOhk7M0/2901477174261124927 /tmp/adamTestMvnQOhk7M0/2901477174261124927/out.cram_head /tmp/adamTestMvnQOhk7M0/2901477174261124927/out.cram_tail /tmp/adamTestMvnQOhk7M0/2901477174261124927/out.cram_tail/.part-r-00001.cram.crc /tmp/adamTestMvnQOhk7M0/2901477174261124927/out.cram_tail/.part-r-00003.cram.crc /tmp/adamTestMvnQOhk7M0/2901477174261124927/out.cram_tail/part-r-00000.cram /tmp/adamTestMvnQOhk7M0/2901477174261124927/out.cram_tail/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/2901477174261124927/out.cram_tail/.part-r-00002.cram.crc /tmp/adamTestMvnQOhk7M0/2901477174261124927/out.cram_tail/part-r-00002.cram /tmp/adamTestMvnQOhk7M0/2901477174261124927/out.cram_tail/_SUCCESS /tmp/adamTestMvnQOhk7M0/2901477174261124927/out.cram_tail/.part-r-00000.cram.crc /tmp/adamTestMvnQOhk7M0/2901477174261124927/out.cram_tail/part-r-00001.cram /tmp/adamTestMvnQOhk7M0/2901477174261124927/out.cram_tail/part-r-00003.cram /tmp/adamTestMvnQOhk7M0/2901477174261124927/.out.cram.crc /tmp/adamTestMvnQOhk7M0/2901477174261124927/out.cram /tmp/adamTestMvnQOhk7M0/2901477174261124927/.out.cram_head.crc /tmp/adamTestMvnQOhk7M0/sample1.queryname.sam7402456023420548666.queryname.sam /tmp/adamTestMvnQOhk7M0/TempSuite4131091522754270222 /tmp/adamTestMvnQOhk7M0/TempSuite275644460954285924.sam /tmp/adamTestMvnQOhk7M0/TempSuite275644460954285924.sam/part-r-00000.sam /tmp/adamTestMvnQOhk7M0/TempSuite275644460954285924.sam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite275644460954285924.sam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite275644460954285924.sam/.part-r-00000.sam.crc /tmp/adamTestMvnQOhk7M0/TempSuite5076330741438501339 /tmp/adamTestMvnQOhk7M0/TempSuite720836470515104196 /tmp/adamTestMvnQOhk7M0/TempSuite667879502593500128 /tmp/adamTestMvnQOhk7M0/TempSuite6512163884223582088 /tmp/adamTestMvnQOhk7M0/4228409604907396121 /tmp/adamTestMvnQOhk7M0/4228409604907396121/unordered.adam /tmp/adamTestMvnQOhk7M0/4228409604907396121/unordered.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/4228409604907396121/unordered.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/4228409604907396121/unordered.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/4228409604907396121/unordered.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/4228409604907396121/unordered.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/4228409604907396121/unordered.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/4228409604907396121/unordered.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/4228409604907396121/unordered.adam/_metadata /tmp/adamTestMvnQOhk7M0/4228409604907396121/unordered.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/4228409604907396121/unordered.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/4228409604907396121/unordered.adam/_references.avro /tmp/adamTestMvnQOhk7M0/4228409604907396121/unordered.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/4228409604907396121/unordered.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/4228409604907396121/unordered.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite2947858880149424311.bed /tmp/adamTestMvnQOhk7M0/TempSuite2947858880149424311.bed/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite2947858880149424311.bed/.part-00000.crc /tmp/adamTestMvnQOhk7M0/TempSuite2947858880149424311.bed/part-00000 /tmp/adamTestMvnQOhk7M0/TempSuite2947858880149424311.bed/_SUCCESS /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite8103644441071410815.fastq /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite8103644441071410815.fastq/.part-00001.crc /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite8103644441071410815.fastq/.part-00003.crc /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite8103644441071410815.fastq/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite8103644441071410815.fastq/part-00003 /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite8103644441071410815.fastq/.part-00000.crc /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite8103644441071410815.fastq/part-00000 /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite8103644441071410815.fastq/part-00002 /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite8103644441071410815.fastq/_SUCCESS /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite8103644441071410815.fastq/part-00001 /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite8103644441071410815.fastq/.part-00002.crc /tmp/adamTestMvnQOhk7M0/TempSuite2947858880149424311 /tmp/adamTestMvnQOhk7M0/unordered.sam3465504925468526405.sam /tmp/adamTestMvnQOhk7M0/TempSuite2374101702432659220.adam /tmp/adamTestMvnQOhk7M0/TempSuite2374101702432659220.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite2374101702432659220.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite2374101702432659220.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite2374101702432659220.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite2374101702432659220.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite2374101702432659220.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite2374101702432659220.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/TempSuite2374101702432659220.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/TempSuite2374101702432659220.adam/.part-00000-c8ff7bb6-0788-4533-9d7f-7e435f29bfc9-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite2374101702432659220.adam/part-00000-c8ff7bb6-0788-4533-9d7f-7e435f29bfc9-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite6534993028970759187 /tmp/adamTestMvnQOhk7M0/.TempSuite4997994183794208044.sam.crc /tmp/adamTestMvnQOhk7M0/TempSuite2040700113100903112.bed /tmp/adamTestMvnQOhk7M0/TempSuite2040700113100903112.bed/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite2040700113100903112.bed/.part-00000.crc /tmp/adamTestMvnQOhk7M0/TempSuite2040700113100903112.bed/part-00000 /tmp/adamTestMvnQOhk7M0/TempSuite2040700113100903112.bed/_SUCCESS /tmp/adamTestMvnQOhk7M0/.FeatureDatasetFunctionsSuite4167689874587223259.bed.crc /tmp/adamTestMvnQOhk7M0/sorted.sam7396869919624979774.sam /tmp/adamTestMvnQOhk7M0/TempSuite2814140461427589364.adam /tmp/adamTestMvnQOhk7M0/TempSuite2814140461427589364.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite2814140461427589364.adam/part-00002-750d8877-c4d8-43ba-ae87-cad160bb73e3-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite2814140461427589364.adam/.part-00002-750d8877-c4d8-43ba-ae87-cad160bb73e3-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite2814140461427589364.adam/part-00000-750d8877-c4d8-43ba-ae87-cad160bb73e3-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite2814140461427589364.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite2814140461427589364.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite2814140461427589364.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite2814140461427589364.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite2814140461427589364.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite2814140461427589364.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/TempSuite2814140461427589364.adam/part-00001-750d8877-c4d8-43ba-ae87-cad160bb73e3-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite2814140461427589364.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/TempSuite2814140461427589364.adam/.part-00001-750d8877-c4d8-43ba-ae87-cad160bb73e3-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite2814140461427589364.adam/.part-00000-750d8877-c4d8-43ba-ae87-cad160bb73e3-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite4182624584591647478 /tmp/adamTestMvnQOhk7M0/TempSuite130574474592384904.bed /tmp/adamTestMvnQOhk7M0/TempSuite130574474592384904.bed/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite130574474592384904.bed/.part-00000.crc /tmp/adamTestMvnQOhk7M0/TempSuite130574474592384904.bed/part-00000 /tmp/adamTestMvnQOhk7M0/TempSuite130574474592384904.bed/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite4173687087478923973.adam /tmp/adamTestMvnQOhk7M0/TempSuite4173687087478923973.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite4173687087478923973.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite4173687087478923973.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite4173687087478923973.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite4173687087478923973.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite4173687087478923973.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite4173687087478923973.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite4173687087478923973.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite4173687087478923973.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite4173687087478923973.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite4173687087478923973.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite4173687087478923973.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/TempSuite4173687087478923973.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/TempSuite4173687087478923973.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite7048827787882179970.bed /tmp/adamTestMvnQOhk7M0/TempSuite7048827787882179970.bed/.part-00001.crc /tmp/adamTestMvnQOhk7M0/TempSuite7048827787882179970.bed/.part-00003.crc /tmp/adamTestMvnQOhk7M0/TempSuite7048827787882179970.bed/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite7048827787882179970.bed/part-00003 /tmp/adamTestMvnQOhk7M0/TempSuite7048827787882179970.bed/.part-00000.crc /tmp/adamTestMvnQOhk7M0/TempSuite7048827787882179970.bed/part-00000 /tmp/adamTestMvnQOhk7M0/TempSuite7048827787882179970.bed/part-00002 /tmp/adamTestMvnQOhk7M0/TempSuite7048827787882179970.bed/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite7048827787882179970.bed/part-00001 /tmp/adamTestMvnQOhk7M0/TempSuite7048827787882179970.bed/.part-00002.crc /tmp/adamTestMvnQOhk7M0/TempSuite96077031734758653 /tmp/adamTestMvnQOhk7M0/TempSuite7568389828534335239.adam /tmp/adamTestMvnQOhk7M0/TempSuite7568389828534335239.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite7568389828534335239.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite7568389828534335239.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite7568389828534335239.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite7568389828534335239.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite7568389828534335239.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite7568389828534335239.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite7568389828534335239.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite7568389828534335239.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/TempSuite7568389828534335239.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite7568389828534335239.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite7568389828534335239.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite7568389828534335239.adam/_header /tmp/adamTestMvnQOhk7M0/TempSuite7568389828534335239.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite2190501500569162109 /tmp/adamTestMvnQOhk7M0/TempSuite6155939592304877304 /tmp/adamTestMvnQOhk7M0/TempSuite9045552604628360218.bed /tmp/adamTestMvnQOhk7M0/TempSuite9045552604628360218.bed/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite9045552604628360218.bed/.part-00000.crc /tmp/adamTestMvnQOhk7M0/TempSuite9045552604628360218.bed/part-00000 /tmp/adamTestMvnQOhk7M0/TempSuite9045552604628360218.bed/_SUCCESS /tmp/adamTestMvnQOhk7M0/6136993099441888997 /tmp/adamTestMvnQOhk7M0/6136993099441888997/binned.adam /tmp/adamTestMvnQOhk7M0/6136993099441888997/binned.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/6136993099441888997/binned.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/6136993099441888997/binned.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/6136993099441888997/binned.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/6136993099441888997/binned.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/6136993099441888997/binned.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/6136993099441888997/binned.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/6136993099441888997/binned.adam/_metadata /tmp/adamTestMvnQOhk7M0/6136993099441888997/binned.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/6136993099441888997/binned.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/6136993099441888997/binned.adam/_references.avro /tmp/adamTestMvnQOhk7M0/6136993099441888997/binned.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/6136993099441888997/binned.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/6136993099441888997/binned.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/unordered.sam4431172607109623846.sam /tmp/adamTestMvnQOhk7M0/TempSuite1517913456217346187 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite671578242362267636 /tmp/adamTestMvnQOhk7M0/artificial.cram6564526526303254760.cram /tmp/adamTestMvnQOhk7M0/javaAC7512523623475715293 /tmp/adamTestMvnQOhk7M0/javaAC7512523623475715293/testRdd.genotype.adam /tmp/adamTestMvnQOhk7M0/javaAC7512523623475715293/testRdd.genotype.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/javaAC7512523623475715293/testRdd.genotype.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/javaAC7512523623475715293/testRdd.genotype.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/javaAC7512523623475715293/testRdd.genotype.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/javaAC7512523623475715293/testRdd.genotype.adam/._header.crc /tmp/adamTestMvnQOhk7M0/javaAC7512523623475715293/testRdd.genotype.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/javaAC7512523623475715293/testRdd.genotype.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/javaAC7512523623475715293/testRdd.genotype.adam/_metadata /tmp/adamTestMvnQOhk7M0/javaAC7512523623475715293/testRdd.genotype.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/javaAC7512523623475715293/testRdd.genotype.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/javaAC7512523623475715293/testRdd.genotype.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/javaAC7512523623475715293/testRdd.genotype.adam/_references.avro /tmp/adamTestMvnQOhk7M0/javaAC7512523623475715293/testRdd.genotype.adam/_header /tmp/adamTestMvnQOhk7M0/javaAC7512523623475715293/testRdd.genotype.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/small.vcf2545925350315040710.vcf /tmp/adamTestMvnQOhk7M0/TempSuite5164804919732698302.adam /tmp/adamTestMvnQOhk7M0/TempSuite5164804919732698302.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite5164804919732698302.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite5164804919732698302.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite5164804919732698302.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite5164804919732698302.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite5164804919732698302.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite5164804919732698302.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite5164804919732698302.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite5164804919732698302.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite5164804919732698302.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite5164804919732698302.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite5164804919732698302.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/TempSuite5164804919732698302.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/TempSuite5164804919732698302.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite4535659490132968606.adam /tmp/adamTestMvnQOhk7M0/TempSuite4535659490132968606.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite4535659490132968606.adam/part-r-00001.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite4535659490132968606.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite4535659490132968606.adam/part-r-00002.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite4535659490132968606.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite4535659490132968606.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite4535659490132968606.adam/_partitionMap.avro /tmp/adamTestMvnQOhk7M0/TempSuite4535659490132968606.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite4535659490132968606.adam/._partitionMap.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite4535659490132968606.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite4535659490132968606.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite4535659490132968606.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite4535659490132968606.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite4535659490132968606.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite4535659490132968606.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite4535659490132968606.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite4535659490132968606.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite4535659490132968606.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite4535659490132968606.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/TempSuite4535659490132968606.adam/part-r-00003.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite4535659490132968606.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/TempSuite4535659490132968606.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite1006138891800178251 /tmp/adamTestMvnQOhk7M0/TempSuite1350942631896717198.adam /tmp/adamTestMvnQOhk7M0/TempSuite1350942631896717198.adam/.part-00001-f19c2183-2485-4bb4-8bba-b045e3ba2f12-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite1350942631896717198.adam/part-00001-f19c2183-2485-4bb4-8bba-b045e3ba2f12-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite1350942631896717198.adam/part-00000-f19c2183-2485-4bb4-8bba-b045e3ba2f12-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite1350942631896717198.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite1350942631896717198.adam/.part-00000-f19c2183-2485-4bb4-8bba-b045e3ba2f12-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite1350942631896717198.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite1350942631896717198.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite1350942631896717198.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite1350942631896717198.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite1350942631896717198.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite1350942631896717198.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/TempSuite1350942631896717198.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/TempSuite1350942631896717198.adam/part-00002-f19c2183-2485-4bb4-8bba-b045e3ba2f12-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite1350942631896717198.adam/.part-00002-f19c2183-2485-4bb4-8bba-b045e3ba2f12-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite156377776643270949.bed /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite156377776643270949.bed/.part-00001.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite156377776643270949.bed/.part-00003.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite156377776643270949.bed/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite156377776643270949.bed/part-00003 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite156377776643270949.bed/.part-00000.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite156377776643270949.bed/part-00000 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite156377776643270949.bed/part-00002 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite156377776643270949.bed/_SUCCESS /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite156377776643270949.bed/part-00001 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite156377776643270949.bed/.part-00002.crc /tmp/adamTestMvnQOhk7M0/TempSuite4245171330133025001 /tmp/adamTestMvnQOhk7M0/trinity.fa4455644004614061460.fa /tmp/adamTestMvnQOhk7M0/hg19.chrM.2bit7029660155269161074.chrM.2bit /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite4626052955440633696 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6568898000712099456.gff3 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6568898000712099456.gff3/.part-00001.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6568898000712099456.gff3/.part-00003.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6568898000712099456.gff3/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6568898000712099456.gff3/part-00003 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6568898000712099456.gff3/.part-00000.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6568898000712099456.gff3/part-00000 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6568898000712099456.gff3/part-00002 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6568898000712099456.gff3/_SUCCESS /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6568898000712099456.gff3/part-00001 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6568898000712099456.gff3/.part-00002.crc /tmp/adamTestMvnQOhk7M0/TempSuite1720714797389791151.adam /tmp/adamTestMvnQOhk7M0/TempSuite1720714797389791151.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite1720714797389791151.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite1720714797389791151.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite1720714797389791151.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite1720714797389791151.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite1720714797389791151.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite1720714797389791151.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite1720714797389791151.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite1720714797389791151.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite1720714797389791151.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite1720714797389791151.adam/_header /tmp/adamTestMvnQOhk7M0/TempSuite1720714797389791151.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite5495298698570852390 /tmp/adamTestMvnQOhk7M0/TempSuite2165144507353018469.adam /tmp/adamTestMvnQOhk7M0/TempSuite2165144507353018469.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite2165144507353018469.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite2165144507353018469.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite2165144507353018469.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite2165144507353018469.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite2165144507353018469.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite2165144507353018469.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite2165144507353018469.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite2165144507353018469.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite2165144507353018469.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite2165144507353018469.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite2165144507353018469.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/TempSuite2165144507353018469.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/TempSuite2165144507353018469.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite9009867246478144396_2.fq /tmp/adamTestMvnQOhk7M0/TempSuite9009867246478144396_2.fq/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite9009867246478144396_2.fq/.part-00000.crc /tmp/adamTestMvnQOhk7M0/TempSuite9009867246478144396_2.fq/part-00000 /tmp/adamTestMvnQOhk7M0/TempSuite9009867246478144396_2.fq/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite5631482558535859863.adam /tmp/adamTestMvnQOhk7M0/TempSuite5631482558535859863.adam/.part-00000-0030bacb-181d-4e91-8fb8-1f410c11ab7d-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite5631482558535859863.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite5631482558535859863.adam/part-00000-0030bacb-181d-4e91-8fb8-1f410c11ab7d-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite5631482558535859863.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite5631482558535859863.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite5631482558535859863.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite5631482558535859863.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/TempSuite5631482558535859863.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite5631482558535859863.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite5631482558535859863.adam/_header /tmp/adamTestMvnQOhk7M0/TempSuite8426006362605778860 /tmp/adamTestMvnQOhk7M0/TempSuite4708947582143309851 /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite6040928398943657313.adam /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite6040928398943657313.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite6040928398943657313.adam/part-r-00001.gz.parquet /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite6040928398943657313.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite6040928398943657313.adam/part-r-00002.gz.parquet /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite6040928398943657313.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite6040928398943657313.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite6040928398943657313.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite6040928398943657313.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite6040928398943657313.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite6040928398943657313.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite6040928398943657313.adam/_metadata /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite6040928398943657313.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite6040928398943657313.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite6040928398943657313.adam/_references.avro /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite6040928398943657313.adam/part-r-00003.gz.parquet /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite6040928398943657313.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite2040700113100903112 /tmp/adamTestMvnQOhk7M0/bqsr1.sam7875598368367151453.sam /tmp/adamTestMvnQOhk7M0/TempSuite5923665036922759584 /tmp/adamTestMvnQOhk7M0/TempSuite9065339108612320860 /tmp/adamTestMvnQOhk7M0/TempSuite8437652266036799764 /tmp/adamTestMvnQOhk7M0/TempSuite7096393125072683013 /tmp/adamTestMvnQOhk7M0/TempSuite7357018281036670502.adam /tmp/adamTestMvnQOhk7M0/TempSuite7357018281036670502.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite7357018281036670502.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite7357018281036670502.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite7357018281036670502.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite7357018281036670502.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite7357018281036670502.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite7357018281036670502.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite7357018281036670502.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite7357018281036670502.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite7357018281036670502.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite7357018281036670502.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite7357018281036670502.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/TempSuite7357018281036670502.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/TempSuite7357018281036670502.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite8123286593673717490.adam /tmp/adamTestMvnQOhk7M0/TempSuite8123286593673717490.adam/.part-00000-615112cb-23a6-49fd-89ed-5e5bc43dbbe6-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite8123286593673717490.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite8123286593673717490.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite8123286593673717490.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite8123286593673717490.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite8123286593673717490.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite8123286593673717490.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite8123286593673717490.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/TempSuite8123286593673717490.adam/part-00000-615112cb-23a6-49fd-89ed-5e5bc43dbbe6-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite8123286593673717490.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite5333387433077533514.fasta /tmp/adamTestMvnQOhk7M0/TempSuite4440936495179630259.adam /tmp/adamTestMvnQOhk7M0/TempSuite4440936495179630259.adam/part-00000-c0ae0c39-183e-4ec2-8d65-bd1a2de13d36-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite4440936495179630259.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite4440936495179630259.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite4440936495179630259.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite4440936495179630259.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite4440936495179630259.adam/.part-00000-c0ae0c39-183e-4ec2-8d65-bd1a2de13d36-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite4440936495179630259.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite4440936495179630259.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite4440936495179630259.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/TempSuite4440936495179630259.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/364594604733440787 /tmp/adamTestMvnQOhk7M0/364594604733440787/sorted.vcf /tmp/adamTestMvnQOhk7M0/364594604733440787/.sorted.vcf.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite4696924264856646376 /tmp/adamTestMvnQOhk7M0/small.vcf8568033677948752341.vcf /tmp/adamTestMvnQOhk7M0/TempSuite3090531032946481465.adam /tmp/adamTestMvnQOhk7M0/TempSuite3090531032946481465.adam/part-00000-e0dde548-8a99-44bb-9a4f-b512d54614cd-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite3090531032946481465.adam/.part-00000-e0dde548-8a99-44bb-9a4f-b512d54614cd-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite3090531032946481465.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite3090531032946481465.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite3090531032946481465.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite3090531032946481465.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite3090531032946481465.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/TempSuite3090531032946481465.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite3090531032946481465.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite3090531032946481465.adam/_header /tmp/adamTestMvnQOhk7M0/1568828207482-0 /tmp/adamTestMvnQOhk7M0/1568828207482-0/bqsr1-r2.fq /tmp/adamTestMvnQOhk7M0/1568828207482-0/bqsr1-r2.fq/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/1568828207482-0/bqsr1-r2.fq/.part-00000.crc /tmp/adamTestMvnQOhk7M0/1568828207482-0/bqsr1-r2.fq/part-00000 /tmp/adamTestMvnQOhk7M0/1568828207482-0/bqsr1-r2.fq/_SUCCESS /tmp/adamTestMvnQOhk7M0/1568828207482-0/bqsr1-r1.fq /tmp/adamTestMvnQOhk7M0/1568828207482-0/bqsr1-r1.fq/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/1568828207482-0/bqsr1-r1.fq/.part-00000.crc /tmp/adamTestMvnQOhk7M0/1568828207482-0/bqsr1-r1.fq/part-00000 /tmp/adamTestMvnQOhk7M0/1568828207482-0/bqsr1-r1.fq/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite4922429411999164454.sam /tmp/adamTestMvnQOhk7M0/TempSuite4922429411999164454.sam/part-r-00000.sam /tmp/adamTestMvnQOhk7M0/TempSuite4922429411999164454.sam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite4922429411999164454.sam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite4922429411999164454.sam/.part-r-00000.sam.crc /tmp/adamTestMvnQOhk7M0/TempSuite8174323204503826026 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite4707042545925118779.bed /tmp/adamTestMvnQOhk7M0/sorted-variants.lex.vcf5503585139594325332.lex.vcf /tmp/adamTestMvnQOhk7M0/small.sam5070931677565874390.sam /tmp/adamTestMvnQOhk7M0/TempSuite6540772395627270627.adam /tmp/adamTestMvnQOhk7M0/TempSuite6540772395627270627.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite6540772395627270627.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite6540772395627270627.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite6540772395627270627.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite6540772395627270627.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite6540772395627270627.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite6540772395627270627.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite6540772395627270627.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite6540772395627270627.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite6540772395627270627.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite6540772395627270627.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite6540772395627270627.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/TempSuite6540772395627270627.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/TempSuite6540772395627270627.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite6920191318908125276.adam /tmp/adamTestMvnQOhk7M0/TempSuite6920191318908125276.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite6920191318908125276.adam/part-00000-5265f5de-029a-4029-aecb-8b42707e2a14-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite6920191318908125276.adam/.part-00000-5265f5de-029a-4029-aecb-8b42707e2a14-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite6920191318908125276.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite6920191318908125276.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite6920191318908125276.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite6920191318908125276.adam/.part-00002-5265f5de-029a-4029-aecb-8b42707e2a14-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite6920191318908125276.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite6920191318908125276.adam/part-00001-5265f5de-029a-4029-aecb-8b42707e2a14-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite6920191318908125276.adam/.part-00001-5265f5de-029a-4029-aecb-8b42707e2a14-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite6920191318908125276.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite6920191318908125276.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/TempSuite6920191318908125276.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/TempSuite6920191318908125276.adam/part-00002-5265f5de-029a-4029-aecb-8b42707e2a14-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite3350515936433615520.adam /tmp/adamTestMvnQOhk7M0/TempSuite3350515936433615520.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite3350515936433615520.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite3350515936433615520.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite3350515936433615520.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite3350515936433615520.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite3350515936433615520.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite3350515936433615520.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite3350515936433615520.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite3350515936433615520.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/TempSuite3350515936433615520.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite3350515936433615520.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite3350515936433615520.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite3350515936433615520.adam/_header /tmp/adamTestMvnQOhk7M0/TempSuite3350515936433615520.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite4955181647764948938.adam /tmp/adamTestMvnQOhk7M0/TempSuite4955181647764948938.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite4955181647764948938.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite4955181647764948938.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite4955181647764948938.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite4955181647764948938.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite4955181647764948938.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite4955181647764948938.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite4955181647764948938.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite4955181647764948938.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite4955181647764948938.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite4955181647764948938.adam/_header /tmp/adamTestMvnQOhk7M0/TempSuite4955181647764948938.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite6727975533740818596.adam /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite6727975533740818596.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite6727975533740818596.adam/part-r-00001.gz.parquet /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite6727975533740818596.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite6727975533740818596.adam/part-r-00002.gz.parquet /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite6727975533740818596.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite6727975533740818596.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite6727975533740818596.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite6727975533740818596.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite6727975533740818596.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite6727975533740818596.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite6727975533740818596.adam/_metadata /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite6727975533740818596.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite6727975533740818596.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite6727975533740818596.adam/_references.avro /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite6727975533740818596.adam/part-r-00003.gz.parquet /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite6727975533740818596.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite6161034472076696468.adam /tmp/adamTestMvnQOhk7M0/TempSuite6161034472076696468.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite6161034472076696468.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite6161034472076696468.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite6161034472076696468.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite6161034472076696468.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite6161034472076696468.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite6161034472076696468.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite6161034472076696468.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite6161034472076696468.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite6161034472076696468.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite6161034472076696468.adam/_header /tmp/adamTestMvnQOhk7M0/TempSuite6161034472076696468.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/.TempSuite1028649760558769490.sam.crc /tmp/adamTestMvnQOhk7M0/TempSuite9061277704953891414.adam /tmp/adamTestMvnQOhk7M0/TempSuite9061277704953891414.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite9061277704953891414.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite9061277704953891414.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite9061277704953891414.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite9061277704953891414.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite9061277704953891414.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite9061277704953891414.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite9061277704953891414.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite9061277704953891414.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite9061277704953891414.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite9061277704953891414.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite9061277704953891414.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/TempSuite9061277704953891414.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/TempSuite9061277704953891414.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/5555049707270525856 /tmp/adamTestMvnQOhk7M0/5555049707270525856/sorted.vcf /tmp/adamTestMvnQOhk7M0/5555049707270525856/.sorted.vcf.crc /tmp/adamTestMvnQOhk7M0/TempSuite4510409246755817053.adam /tmp/adamTestMvnQOhk7M0/TempSuite4510409246755817053.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite4510409246755817053.adam/part-r-00001.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite4510409246755817053.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite4510409246755817053.adam/part-r-00002.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite4510409246755817053.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite4510409246755817053.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite4510409246755817053.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite4510409246755817053.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite4510409246755817053.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite4510409246755817053.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite4510409246755817053.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite4510409246755817053.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite4510409246755817053.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite4510409246755817053.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/TempSuite4510409246755817053.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite4510409246755817053.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite4510409246755817053.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite4510409246755817053.adam/part-r-00003.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite4510409246755817053.adam/_header /tmp/adamTestMvnQOhk7M0/TempSuite4510409246755817053.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite4277862897234719292.fq /tmp/adamTestMvnQOhk7M0/TempSuite4277862897234719292.fq/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite4277862897234719292.fq/.part-00000.crc /tmp/adamTestMvnQOhk7M0/TempSuite4277862897234719292.fq/part-00000 /tmp/adamTestMvnQOhk7M0/TempSuite4277862897234719292.fq/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite1993589231082319169 /tmp/adamTestMvnQOhk7M0/.TempSuite2157334334782860530_2.fq.crc /tmp/adamTestMvnQOhk7M0/TempSuite2459141406042355714.adam /tmp/adamTestMvnQOhk7M0/TempSuite2459141406042355714.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite2459141406042355714.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite2459141406042355714.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite2459141406042355714.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite2459141406042355714.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite2459141406042355714.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite2459141406042355714.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite2459141406042355714.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite2459141406042355714.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite2459141406042355714.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite7028346209037138704 /tmp/adamTestMvnQOhk7M0/.TempSuite1511544356175882234_2.fq.crc /tmp/adamTestMvnQOhk7M0/TempSuite8945663969612270568.adam /tmp/adamTestMvnQOhk7M0/TempSuite8945663969612270568.adam/.part-00000-77d3d4ac-ac7b-459f-9f79-8aed60f4f003-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite8945663969612270568.adam/part-00000-77d3d4ac-ac7b-459f-9f79-8aed60f4f003-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite8945663969612270568.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite8945663969612270568.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite8945663969612270568.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite8945663969612270568.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite8945663969612270568.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite8945663969612270568.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite8945663969612270568.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/TempSuite8945663969612270568.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/TempSuite3139652909069672046 /tmp/adamTestMvnQOhk7M0/TempSuite5013844328550905477.adam /tmp/adamTestMvnQOhk7M0/TempSuite5013844328550905477.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite5013844328550905477.adam/part-00000-5ad75b8f-dd69-48cb-b8e8-9f0398113bd1-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite5013844328550905477.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite5013844328550905477.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite5013844328550905477.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite5013844328550905477.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/TempSuite5013844328550905477.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite5013844328550905477.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite5013844328550905477.adam/_header /tmp/adamTestMvnQOhk7M0/TempSuite5013844328550905477.adam/.part-00000-5ad75b8f-dd69-48cb-b8e8-9f0398113bd1-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/noqual4028362378131907688 /tmp/adamTestMvnQOhk7M0/noqual4028362378131907688/noqualB.fastq /tmp/adamTestMvnQOhk7M0/noqual4028362378131907688/noqualB.fastq/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/noqual4028362378131907688/noqualB.fastq/.part-00000.crc /tmp/adamTestMvnQOhk7M0/noqual4028362378131907688/noqualB.fastq/part-00000 /tmp/adamTestMvnQOhk7M0/noqual4028362378131907688/noqualB.fastq/_SUCCESS /tmp/adamTestMvnQOhk7M0/noqual4028362378131907688/noqualA.sam /tmp/adamTestMvnQOhk7M0/noqual4028362378131907688/noqualA.sam/part-r-00000.sam /tmp/adamTestMvnQOhk7M0/noqual4028362378131907688/noqualA.sam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/noqual4028362378131907688/noqualA.sam/_SUCCESS /tmp/adamTestMvnQOhk7M0/noqual4028362378131907688/noqualA.sam/.part-r-00000.sam.crc /tmp/adamTestMvnQOhk7M0/TempSuite8930671883684018549 /tmp/adamTestMvnQOhk7M0/TempSuite5269411139955729674.fq /tmp/adamTestMvnQOhk7M0/TempSuite5269411139955729674.fq/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite5269411139955729674.fq/.part-00000.crc /tmp/adamTestMvnQOhk7M0/TempSuite5269411139955729674.fq/part-00000 /tmp/adamTestMvnQOhk7M0/TempSuite5269411139955729674.fq/_SUCCESS /tmp/adamTestMvnQOhk7M0/artificial.sam6291348046927511256.sam /tmp/adamTestMvnQOhk7M0/unordered.sam5252521806327810861.sam /tmp/adamTestMvnQOhk7M0/TempSuite8593153269556503931.bed /tmp/adamTestMvnQOhk7M0/TempSuite8593153269556503931.bed/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite8593153269556503931.bed/.part-00000.crc /tmp/adamTestMvnQOhk7M0/TempSuite8593153269556503931.bed/part-00000 /tmp/adamTestMvnQOhk7M0/TempSuite8593153269556503931.bed/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite6259197783774462100 /tmp/adamTestMvnQOhk7M0/TempSuite8961696204773805577 /tmp/adamTestMvnQOhk7M0/TempSuite6423953745571339774 /tmp/adamTestMvnQOhk7M0/sorted-variants.vcf6572463416073927208.vcf /tmp/adamTestMvnQOhk7M0/TempSuite6004676247926473588 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite8856082189248920606 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite8415179267210657499 /tmp/adamTestMvnQOhk7M0/.TempSuite8623672424989740141.sam.crc /tmp/adamTestMvnQOhk7M0/3685259391110612451 /tmp/adamTestMvnQOhk7M0/3685259391110612451/.sorted-variants.lex.vcf.crc /tmp/adamTestMvnQOhk7M0/3685259391110612451/sorted-variants.lex.vcf /tmp/adamTestMvnQOhk7M0/TempSuite819990045566698594 /tmp/adamTestMvnQOhk7M0/unordered.sam6525065470678308986.sam /tmp/adamTestMvnQOhk7M0/TempSuite6534993028970759187.bed /tmp/adamTestMvnQOhk7M0/TempSuite6534993028970759187.bed/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite6534993028970759187.bed/.part-00000.crc /tmp/adamTestMvnQOhk7M0/TempSuite6534993028970759187.bed/part-00000 /tmp/adamTestMvnQOhk7M0/TempSuite6534993028970759187.bed/_SUCCESS /tmp/adamTestMvnQOhk7M0/.FeatureDatasetFunctionsSuite7093526722100633285.bed.crc /tmp/adamTestMvnQOhk7M0/4296149512695500914 /tmp/adamTestMvnQOhk7M0/4296149512695500914/bqsr1.vcf.bgz /tmp/adamTestMvnQOhk7M0/4296149512695500914/bqsr1.vcf.bgz/.part-r-00000.bgz.crc /tmp/adamTestMvnQOhk7M0/4296149512695500914/bqsr1.vcf.bgz/.part-r-00003.bgz.crc /tmp/adamTestMvnQOhk7M0/4296149512695500914/bqsr1.vcf.bgz/part-r-00000.bgz /tmp/adamTestMvnQOhk7M0/4296149512695500914/bqsr1.vcf.bgz/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/4296149512695500914/bqsr1.vcf.bgz/.part-r-00001.bgz.crc /tmp/adamTestMvnQOhk7M0/4296149512695500914/bqsr1.vcf.bgz/_SUCCESS /tmp/adamTestMvnQOhk7M0/4296149512695500914/bqsr1.vcf.bgz/part-r-00001.bgz /tmp/adamTestMvnQOhk7M0/4296149512695500914/bqsr1.vcf.bgz/part-r-00003.bgz /tmp/adamTestMvnQOhk7M0/4296149512695500914/bqsr1.vcf.bgz/part-r-00002.bgz /tmp/adamTestMvnQOhk7M0/4296149512695500914/bqsr1.vcf.bgz/.part-r-00002.bgz.crc /tmp/adamTestMvnQOhk7M0/unordered.sam3776075307256816358.sam /tmp/adamTestMvnQOhk7M0/1568827120617-0 /tmp/adamTestMvnQOhk7M0/1568827120617-0/test_single.vcf /tmp/adamTestMvnQOhk7M0/1568827120617-0/test.vcf /tmp/adamTestMvnQOhk7M0/1568827120617-0/test.vcf/.part-r-00000.crc /tmp/adamTestMvnQOhk7M0/1568827120617-0/test.vcf/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/1568827120617-0/test.vcf/_SUCCESS /tmp/adamTestMvnQOhk7M0/1568827120617-0/test.vcf/part-r-00000 /tmp/adamTestMvnQOhk7M0/1568827120617-0/.test_single.vcf.crc /tmp/adamTestMvnQOhk7M0/TempSuite5228677105474466461 /tmp/adamTestMvnQOhk7M0/TempSuite4440936495179630259 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6730472695720948748.interval_list /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6730472695720948748.interval_list/.part-00001.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6730472695720948748.interval_list/.part-00003.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6730472695720948748.interval_list/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6730472695720948748.interval_list/part-00003 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6730472695720948748.interval_list/.part-00000.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6730472695720948748.interval_list/part-00000 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6730472695720948748.interval_list/part-00002 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6730472695720948748.interval_list/_SUCCESS /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6730472695720948748.interval_list/part-00001 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6730472695720948748.interval_list/.part-00002.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite2481410134186639951 /tmp/adamTestMvnQOhk7M0/TempSuite819990045566698594.adam /tmp/adamTestMvnQOhk7M0/TempSuite819990045566698594.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite819990045566698594.adam/part-00000-482ef8fa-9ba6-450c-a5fc-0f31c93222c6-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite819990045566698594.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite819990045566698594.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite819990045566698594.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite819990045566698594.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/TempSuite819990045566698594.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite819990045566698594.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite819990045566698594.adam/_header /tmp/adamTestMvnQOhk7M0/TempSuite819990045566698594.adam/.part-00000-482ef8fa-9ba6-450c-a5fc-0f31c93222c6-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite8240623192258170521 /tmp/adamTestMvnQOhk7M0/TempSuite8548487709805759509.adam /tmp/adamTestMvnQOhk7M0/TempSuite8548487709805759509.adam/.part-00000-5440c2a3-e83e-4412-b5fa-e670d44b7e34-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite8548487709805759509.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite8548487709805759509.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite8548487709805759509.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite8548487709805759509.adam/part-00000-5440c2a3-e83e-4412-b5fa-e670d44b7e34-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite8548487709805759509.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite8548487709805759509.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite8548487709805759509.adam/_header /tmp/adamTestMvnQOhk7M0/TempSuite6659017218297474765 /tmp/adamTestMvnQOhk7M0/TempSuite6766549934000094873 /tmp/adamTestMvnQOhk7M0/TempSuite3687692684357995479_1.fq /tmp/adamTestMvnQOhk7M0/TempSuite3687692684357995479_1.fq/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite3687692684357995479_1.fq/.part-00000.crc /tmp/adamTestMvnQOhk7M0/TempSuite3687692684357995479_1.fq/part-00000 /tmp/adamTestMvnQOhk7M0/TempSuite3687692684357995479_1.fq/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite1944598587986448675 /tmp/adamTestMvnQOhk7M0/TempSuite4655562968502465991 /tmp/adamTestMvnQOhk7M0/TempSuite194822740760181891 /tmp/adamTestMvnQOhk7M0/TempSuite4365708844468944420 /tmp/adamTestMvnQOhk7M0/TempSuite1948188965748285881 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite8164412303953859811.interval_list /tmp/adamTestMvnQOhk7M0/javaAC5750098179040028827 /tmp/adamTestMvnQOhk7M0/javaAC5750098179040028827/testRdd.read.adam /tmp/adamTestMvnQOhk7M0/javaAC5750098179040028827/testRdd.read.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/javaAC5750098179040028827/testRdd.read.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/javaAC5750098179040028827/testRdd.read.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/javaAC5750098179040028827/testRdd.read.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/javaAC5750098179040028827/testRdd.read.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/javaAC5750098179040028827/testRdd.read.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/javaAC5750098179040028827/testRdd.read.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/javaAC5750098179040028827/testRdd.read.adam/_metadata /tmp/adamTestMvnQOhk7M0/javaAC5750098179040028827/testRdd.read.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/javaAC5750098179040028827/testRdd.read.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/javaAC5750098179040028827/testRdd.read.adam/_references.avro /tmp/adamTestMvnQOhk7M0/javaAC5750098179040028827/testRdd.read.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/javaAC5750098179040028827/testRdd.read.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/javaAC5750098179040028827/testRdd.read.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite4209831601909380218.bed /tmp/adamTestMvnQOhk7M0/TempSuite4209831601909380218.bed/.part-00001.crc /tmp/adamTestMvnQOhk7M0/TempSuite4209831601909380218.bed/.part-00003.crc /tmp/adamTestMvnQOhk7M0/TempSuite4209831601909380218.bed/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite4209831601909380218.bed/part-00003 /tmp/adamTestMvnQOhk7M0/TempSuite4209831601909380218.bed/.part-00000.crc /tmp/adamTestMvnQOhk7M0/TempSuite4209831601909380218.bed/part-00000 /tmp/adamTestMvnQOhk7M0/TempSuite4209831601909380218.bed/part-00002 /tmp/adamTestMvnQOhk7M0/TempSuite4209831601909380218.bed/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite4209831601909380218.bed/part-00001 /tmp/adamTestMvnQOhk7M0/TempSuite4209831601909380218.bed/.part-00002.crc /tmp/adamTestMvnQOhk7M0/TempSuite3085059769089572730 /tmp/adamTestMvnQOhk7M0/TempSuite5419731324924024097 /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite4546341503540917577.fastq /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite5182173535275038204.bed /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite5182173535275038204.bed/.part-00001.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite5182173535275038204.bed/.part-00003.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite5182173535275038204.bed/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite5182173535275038204.bed/part-00003 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite5182173535275038204.bed/.part-00000.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite5182173535275038204.bed/part-00000 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite5182173535275038204.bed/part-00002 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite5182173535275038204.bed/_SUCCESS /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite5182173535275038204.bed/part-00001 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite5182173535275038204.bed/.part-00002.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6073319493758017522 /tmp/adamTestMvnQOhk7M0/TempSuite6804261728909212990 /tmp/adamTestMvnQOhk7M0/TempSuite4997994183794208044 /tmp/adamTestMvnQOhk7M0/small.sam7190553581468090632.sam /tmp/adamTestMvnQOhk7M0/TempSuite4245171330133025001.adam /tmp/adamTestMvnQOhk7M0/TempSuite4245171330133025001.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite4245171330133025001.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite4245171330133025001.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite4245171330133025001.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite4245171330133025001.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite4245171330133025001.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite4245171330133025001.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite4245171330133025001.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite4245171330133025001.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite4245171330133025001.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite4245171330133025001.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite4245171330133025001.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/TempSuite4245171330133025001.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/TempSuite4245171330133025001.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite2463036242313517716 /tmp/adamTestMvnQOhk7M0/8978711489514378571 /tmp/adamTestMvnQOhk7M0/8978711489514378571/unordered.sam /tmp/adamTestMvnQOhk7M0/8978711489514378571/.unordered.sam.crc /tmp/adamTestMvnQOhk7M0/TempSuite6321281584204778283 /tmp/adamTestMvnQOhk7M0/7685876716285982206 /tmp/adamTestMvnQOhk7M0/7685876716285982206/out.sam_head /tmp/adamTestMvnQOhk7M0/7685876716285982206/.out.sam_head.crc /tmp/adamTestMvnQOhk7M0/7685876716285982206/out.sam_tail /tmp/adamTestMvnQOhk7M0/7685876716285982206/out.sam_tail/part-r-00002.sam /tmp/adamTestMvnQOhk7M0/7685876716285982206/out.sam_tail/part-r-00000.sam /tmp/adamTestMvnQOhk7M0/7685876716285982206/out.sam_tail/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/7685876716285982206/out.sam_tail/_SUCCESS /tmp/adamTestMvnQOhk7M0/7685876716285982206/out.sam_tail/.part-r-00000.sam.crc /tmp/adamTestMvnQOhk7M0/7685876716285982206/out.sam_tail/part-r-00003.sam /tmp/adamTestMvnQOhk7M0/7685876716285982206/out.sam_tail/.part-r-00002.sam.crc /tmp/adamTestMvnQOhk7M0/7685876716285982206/out.sam_tail/.part-r-00001.sam.crc /tmp/adamTestMvnQOhk7M0/7685876716285982206/out.sam_tail/part-r-00001.sam /tmp/adamTestMvnQOhk7M0/7685876716285982206/out.sam_tail/.part-r-00003.sam.crc /tmp/adamTestMvnQOhk7M0/7685876716285982206/.out.sam.crc /tmp/adamTestMvnQOhk7M0/7685876716285982206/out.sam /tmp/adamTestMvnQOhk7M0/TempSuite7311440456984986808 /tmp/adamTestMvnQOhk7M0/2814047795884503157 /tmp/adamTestMvnQOhk7M0/2814047795884503157/tag.sam /tmp/adamTestMvnQOhk7M0/2814047795884503157/.tag.sam.crc /tmp/adamTestMvnQOhk7M0/TempSuite8547662888689599438 /tmp/adamTestMvnQOhk7M0/TempSuite1444736608228156104 /tmp/adamTestMvnQOhk7M0/TempSuite5131648046903115676 /tmp/adamTestMvnQOhk7M0/TempSuite4089097348575138033 /tmp/adamTestMvnQOhk7M0/TempSuite340407158793782326 /tmp/adamTestMvnQOhk7M0/TempSuite6648105315304141768 /tmp/adamTestMvnQOhk7M0/TempSuite1856071205356031025.adam /tmp/adamTestMvnQOhk7M0/TempSuite1856071205356031025.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite1856071205356031025.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite1856071205356031025.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite1856071205356031025.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite1856071205356031025.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite1856071205356031025.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite1856071205356031025.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite1856071205356031025.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite1856071205356031025.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite1856071205356031025.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite6742862710711574918.adam /tmp/adamTestMvnQOhk7M0/TempSuite6742862710711574918.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite6742862710711574918.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite6742862710711574918.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite6742862710711574918.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite6742862710711574918.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite6742862710711574918.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite6742862710711574918.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite6742862710711574918.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite6742862710711574918.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite6742862710711574918.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite6742862710711574918.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite6742862710711574918.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/TempSuite6742862710711574918.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/TempSuite6742862710711574918.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/4788033352317390780 /tmp/adamTestMvnQOhk7M0/4788033352317390780/bqsr1.vcf.bgz /tmp/adamTestMvnQOhk7M0/4788033352317390780/bqsr1.vcf.bgz/.part-r-00000.bgz.crc /tmp/adamTestMvnQOhk7M0/4788033352317390780/bqsr1.vcf.bgz/.part-r-00003.bgz.crc /tmp/adamTestMvnQOhk7M0/4788033352317390780/bqsr1.vcf.bgz/part-r-00000.bgz /tmp/adamTestMvnQOhk7M0/4788033352317390780/bqsr1.vcf.bgz/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/4788033352317390780/bqsr1.vcf.bgz/.part-r-00001.bgz.crc /tmp/adamTestMvnQOhk7M0/4788033352317390780/bqsr1.vcf.bgz/_SUCCESS /tmp/adamTestMvnQOhk7M0/4788033352317390780/bqsr1.vcf.bgz/part-r-00001.bgz /tmp/adamTestMvnQOhk7M0/4788033352317390780/bqsr1.vcf.bgz/part-r-00003.bgz /tmp/adamTestMvnQOhk7M0/4788033352317390780/bqsr1.vcf.bgz/part-r-00002.bgz /tmp/adamTestMvnQOhk7M0/4788033352317390780/bqsr1.vcf.bgz/.part-r-00002.bgz.crc /tmp/adamTestMvnQOhk7M0/TempSuite2201284548348463111.adam /tmp/adamTestMvnQOhk7M0/TempSuite2201284548348463111.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite2201284548348463111.adam/part-r-00001.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite2201284548348463111.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite2201284548348463111.adam/part-r-00002.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite2201284548348463111.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite2201284548348463111.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite2201284548348463111.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite2201284548348463111.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite2201284548348463111.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite2201284548348463111.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite2201284548348463111.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite2201284548348463111.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite2201284548348463111.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/TempSuite2201284548348463111.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite2201284548348463111.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite2201284548348463111.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite2201284548348463111.adam/part-r-00003.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite2201284548348463111.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite5862578241582932965.interval_list /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite5862578241582932965.interval_list/.part-00001.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite5862578241582932965.interval_list/.part-00003.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite5862578241582932965.interval_list/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite5862578241582932965.interval_list/part-00003 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite5862578241582932965.interval_list/.part-00000.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite5862578241582932965.interval_list/part-00000 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite5862578241582932965.interval_list/part-00002 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite5862578241582932965.interval_list/_SUCCESS /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite5862578241582932965.interval_list/part-00001 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite5862578241582932965.interval_list/.part-00002.crc /tmp/adamTestMvnQOhk7M0/TempSuite5026348888428886828 /tmp/adamTestMvnQOhk7M0/1568827945797-0 /tmp/adamTestMvnQOhk7M0/1568827945797-0/bamReads.adam /tmp/adamTestMvnQOhk7M0/1568827945797-0/bamReads.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/1568827945797-0/bamReads.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/1568827945797-0/bamReads.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/1568827945797-0/bamReads.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/1568827945797-0/bamReads.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/1568827945797-0/bamReads.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/1568827945797-0/bamReads.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/1568827945797-0/bamReads.adam/_metadata /tmp/adamTestMvnQOhk7M0/1568827945797-0/bamReads.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/1568827945797-0/bamReads.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/1568827945797-0/bamReads.adam/_references.avro /tmp/adamTestMvnQOhk7M0/1568827945797-0/bamReads.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/1568827945797-0/bamReads.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/1568827945797-0/bamReads.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite168599982526042693 /tmp/adamTestMvnQOhk7M0/TempSuite7920333410925947011 /tmp/adamTestMvnQOhk7M0/TempSuite692417183238921738.adam /tmp/adamTestMvnQOhk7M0/TempSuite692417183238921738.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite692417183238921738.adam/part-r-00001.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite692417183238921738.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite692417183238921738.adam/part-r-00002.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite692417183238921738.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite692417183238921738.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite692417183238921738.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite692417183238921738.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite692417183238921738.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite692417183238921738.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite692417183238921738.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite692417183238921738.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite692417183238921738.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite692417183238921738.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite692417183238921738.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite692417183238921738.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite692417183238921738.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/TempSuite692417183238921738.adam/part-r-00003.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite692417183238921738.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/TempSuite692417183238921738.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/.FeatureDatasetFunctionsSuite6387518922073527681.gff3.crc /tmp/adamTestMvnQOhk7M0/TempSuite4708947582143309851.bed /tmp/adamTestMvnQOhk7M0/TempSuite4708947582143309851.bed/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite4708947582143309851.bed/.part-00000.crc /tmp/adamTestMvnQOhk7M0/TempSuite4708947582143309851.bed/part-00000 /tmp/adamTestMvnQOhk7M0/TempSuite4708947582143309851.bed/_SUCCESS /tmp/adamTestMvnQOhk7M0/javaAC8839684511695144809 /tmp/adamTestMvnQOhk7M0/javaAC8839684511695144809/testRdd.slices.adam /tmp/adamTestMvnQOhk7M0/javaAC8839684511695144809/testRdd.slices.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/javaAC8839684511695144809/testRdd.slices.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/javaAC8839684511695144809/testRdd.slices.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/javaAC8839684511695144809/testRdd.slices.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/javaAC8839684511695144809/testRdd.slices.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/javaAC8839684511695144809/testRdd.slices.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/javaAC8839684511695144809/testRdd.slices.adam/_metadata /tmp/adamTestMvnQOhk7M0/javaAC8839684511695144809/testRdd.slices.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/javaAC8839684511695144809/testRdd.slices.adam/_references.avro /tmp/adamTestMvnQOhk7M0/javaAC8839684511695144809/testRdd.slices.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite8941416844737674151.adam /tmp/adamTestMvnQOhk7M0/TempSuite8941416844737674151.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite8941416844737674151.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite8941416844737674151.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite8941416844737674151.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite8941416844737674151.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite8941416844737674151.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite8941416844737674151.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite8941416844737674151.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite8941416844737674151.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/TempSuite8941416844737674151.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite8941416844737674151.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite8941416844737674151.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite8941416844737674151.adam/_header /tmp/adamTestMvnQOhk7M0/TempSuite8941416844737674151.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite5710260776047204571.adam /tmp/adamTestMvnQOhk7M0/TempSuite5710260776047204571.adam/part-00000-a5f538ba-a601-4ad8-b11f-2492fd681599-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite5710260776047204571.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite5710260776047204571.adam/part-00002-a5f538ba-a601-4ad8-b11f-2492fd681599-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite5710260776047204571.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite5710260776047204571.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite5710260776047204571.adam/.part-00002-a5f538ba-a601-4ad8-b11f-2492fd681599-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite5710260776047204571.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite5710260776047204571.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/TempSuite5710260776047204571.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite5710260776047204571.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite5710260776047204571.adam/_header /tmp/adamTestMvnQOhk7M0/TempSuite5710260776047204571.adam/.part-00001-a5f538ba-a601-4ad8-b11f-2492fd681599-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite5710260776047204571.adam/.part-00000-a5f538ba-a601-4ad8-b11f-2492fd681599-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite5710260776047204571.adam/part-00001-a5f538ba-a601-4ad8-b11f-2492fd681599-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/.SliceDatasetSuite7735815009535088760.fasta.crc /tmp/adamTestMvnQOhk7M0/TempSuite770447902477354382 /tmp/adamTestMvnQOhk7M0/TempSuite2787459132766733592.bam /tmp/adamTestMvnQOhk7M0/TempSuite2787459132766733592.bam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite2787459132766733592.bam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite2787459132766733592.bam/.part-r-00000.bam.crc /tmp/adamTestMvnQOhk7M0/TempSuite2787459132766733592.bam/part-r-00000.bam /tmp/adamTestMvnQOhk7M0/.ReadDatasetSuite4546341503540917577.fastq.crc /tmp/adamTestMvnQOhk7M0/TempSuite481994599066708114.bed /tmp/adamTestMvnQOhk7M0/TempSuite481994599066708114.bed/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite481994599066708114.bed/.part-00000.crc /tmp/adamTestMvnQOhk7M0/TempSuite481994599066708114.bed/part-00000 /tmp/adamTestMvnQOhk7M0/TempSuite481994599066708114.bed/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite7117343357255811070 /tmp/adamTestMvnQOhk7M0/5557888851532328853 /tmp/adamTestMvnQOhk7M0/5557888851532328853/binned.adam /tmp/adamTestMvnQOhk7M0/5557888851532328853/binned.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/5557888851532328853/binned.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/5557888851532328853/binned.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/5557888851532328853/binned.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/5557888851532328853/binned.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/5557888851532328853/binned.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/5557888851532328853/binned.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/5557888851532328853/binned.adam/_metadata /tmp/adamTestMvnQOhk7M0/5557888851532328853/binned.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/5557888851532328853/binned.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/5557888851532328853/binned.adam/_references.avro /tmp/adamTestMvnQOhk7M0/5557888851532328853/binned.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/5557888851532328853/binned.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/5557888851532328853/binned.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite1028649760558769490.sam /tmp/adamTestMvnQOhk7M0/TempSuite4131091522754270222.bam /tmp/adamTestMvnQOhk7M0/TempSuite4131091522754270222.bam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite4131091522754270222.bam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite4131091522754270222.bam/.part-r-00000.bam.crc /tmp/adamTestMvnQOhk7M0/TempSuite4131091522754270222.bam/part-r-00000.bam /tmp/adamTestMvnQOhk7M0/TempSuite2527879293720784441 /tmp/adamTestMvnQOhk7M0/TempSuite984269380841278748 /tmp/adamTestMvnQOhk7M0/.FeatureDatasetFunctionsSuite2481410134186639951.bed.crc /tmp/adamTestMvnQOhk7M0/TempSuite8548487709805759509 /tmp/adamTestMvnQOhk7M0/2779569144631901904 /tmp/adamTestMvnQOhk7M0/2779569144631901904/.ordered.sam.crc /tmp/adamTestMvnQOhk7M0/2779569144631901904/ordered.sam /tmp/adamTestMvnQOhk7M0/TempSuite1824106881560507751.adam /tmp/adamTestMvnQOhk7M0/TempSuite1824106881560507751.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite1824106881560507751.adam/part-r-00001.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite1824106881560507751.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite1824106881560507751.adam/part-r-00002.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite1824106881560507751.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite1824106881560507751.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite1824106881560507751.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite1824106881560507751.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite1824106881560507751.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite1824106881560507751.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite1824106881560507751.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite1824106881560507751.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite1824106881560507751.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite1824106881560507751.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite1824106881560507751.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite1824106881560507751.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite1824106881560507751.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/TempSuite1824106881560507751.adam/part-r-00003.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite1824106881560507751.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/TempSuite1824106881560507751.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite5631482558535859863 /tmp/adamTestMvnQOhk7M0/TempSuite8692455297624104991 /tmp/adamTestMvnQOhk7M0/TempSuite5160202512996665195 /tmp/adamTestMvnQOhk7M0/TempSuite1713593188967719646.adam /tmp/adamTestMvnQOhk7M0/TempSuite1713593188967719646.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite1713593188967719646.adam/part-r-00001.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite1713593188967719646.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite1713593188967719646.adam/part-r-00002.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite1713593188967719646.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite1713593188967719646.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite1713593188967719646.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite1713593188967719646.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite1713593188967719646.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite1713593188967719646.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite1713593188967719646.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite1713593188967719646.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite1713593188967719646.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite1713593188967719646.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite1713593188967719646.adam/part-r-00003.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite1713593188967719646.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite6712287935908503135.bed /tmp/adamTestMvnQOhk7M0/TempSuite6712287935908503135.bed/.part-00001.crc /tmp/adamTestMvnQOhk7M0/TempSuite6712287935908503135.bed/.part-00003.crc /tmp/adamTestMvnQOhk7M0/TempSuite6712287935908503135.bed/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite6712287935908503135.bed/part-00003 /tmp/adamTestMvnQOhk7M0/TempSuite6712287935908503135.bed/.part-00000.crc /tmp/adamTestMvnQOhk7M0/TempSuite6712287935908503135.bed/part-00000 /tmp/adamTestMvnQOhk7M0/TempSuite6712287935908503135.bed/part-00002 /tmp/adamTestMvnQOhk7M0/TempSuite6712287935908503135.bed/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite6712287935908503135.bed/part-00001 /tmp/adamTestMvnQOhk7M0/TempSuite6712287935908503135.bed/.part-00002.crc /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite7382405344291635844 /tmp/adamTestMvnQOhk7M0/TempSuite7128221550275790346.adam /tmp/adamTestMvnQOhk7M0/TempSuite7128221550275790346.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite7128221550275790346.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite7128221550275790346.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite7128221550275790346.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite7128221550275790346.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite7128221550275790346.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite7128221550275790346.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite7128221550275790346.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite7128221550275790346.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite7128221550275790346.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite7128221550275790346.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite7128221550275790346.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/TempSuite7128221550275790346.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/TempSuite7128221550275790346.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/reads127263714104518351137 /tmp/adamTestMvnQOhk7M0/reads127263714104518351137/reads12.sam /tmp/adamTestMvnQOhk7M0/reads127263714104518351137/reads12.sam/part-r-00000.sam /tmp/adamTestMvnQOhk7M0/reads127263714104518351137/reads12.sam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/reads127263714104518351137/reads12.sam/_SUCCESS /tmp/adamTestMvnQOhk7M0/reads127263714104518351137/reads12.sam/.part-r-00000.sam.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite156377776643270949 /tmp/adamTestMvnQOhk7M0/TempSuite895334630676160511.adam /tmp/adamTestMvnQOhk7M0/TempSuite895334630676160511.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite895334630676160511.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite895334630676160511.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite895334630676160511.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite895334630676160511.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite895334630676160511.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite895334630676160511.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite895334630676160511.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite895334630676160511.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite895334630676160511.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite895334630676160511.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite895334630676160511.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/TempSuite895334630676160511.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/TempSuite895334630676160511.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/6794217290405498256 /tmp/adamTestMvnQOhk7M0/TempSuite4365708844468944420.adam /tmp/adamTestMvnQOhk7M0/TempSuite4365708844468944420.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite4365708844468944420.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite4365708844468944420.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite4365708844468944420.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite4365708844468944420.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite4365708844468944420.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite4365708844468944420.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite4365708844468944420.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite4365708844468944420.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite4365708844468944420.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite4365708844468944420.adam/_header /tmp/adamTestMvnQOhk7M0/TempSuite4365708844468944420.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite3504787196893364903.adam /tmp/adamTestMvnQOhk7M0/TempSuite3504787196893364903.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite3504787196893364903.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite3504787196893364903.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite3504787196893364903.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite3504787196893364903.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite3504787196893364903.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite3504787196893364903.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite3504787196893364903.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite3504787196893364903.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite3504787196893364903.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite3504787196893364903.adam/_header /tmp/adamTestMvnQOhk7M0/TempSuite3504787196893364903.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite6359887027637572460.adam /tmp/adamTestMvnQOhk7M0/TempSuite6359887027637572460.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite6359887027637572460.adam/part-r-00001.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite6359887027637572460.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite6359887027637572460.adam/part-r-00002.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite6359887027637572460.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite6359887027637572460.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite6359887027637572460.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite6359887027637572460.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite6359887027637572460.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite6359887027637572460.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite6359887027637572460.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite6359887027637572460.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite6359887027637572460.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite6359887027637572460.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite6359887027637572460.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite6359887027637572460.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite6359887027637572460.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/TempSuite6359887027637572460.adam/part-r-00003.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite6359887027637572460.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/TempSuite6359887027637572460.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite4631691071711281128.gtf /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite4631691071711281128.gtf/.part-00001.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite4631691071711281128.gtf/.part-00003.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite4631691071711281128.gtf/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite4631691071711281128.gtf/part-00003 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite4631691071711281128.gtf/.part-00000.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite4631691071711281128.gtf/part-00000 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite4631691071711281128.gtf/part-00002 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite4631691071711281128.gtf/_SUCCESS /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite4631691071711281128.gtf/part-00001 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite4631691071711281128.gtf/.part-00002.crc /tmp/adamTestMvnQOhk7M0/TempSuite4522324891747851041.fq /tmp/adamTestMvnQOhk7M0/TempSuite4522324891747851041.fq/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite4522324891747851041.fq/.part-00000.crc /tmp/adamTestMvnQOhk7M0/TempSuite4522324891747851041.fq/part-00000 /tmp/adamTestMvnQOhk7M0/TempSuite4522324891747851041.fq/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite8186308571257270292.fa /tmp/adamTestMvnQOhk7M0/TempSuite8186308571257270292.fa/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite8186308571257270292.fa/.part-00000.crc /tmp/adamTestMvnQOhk7M0/TempSuite8186308571257270292.fa/part-00000 /tmp/adamTestMvnQOhk7M0/TempSuite8186308571257270292.fa/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite4866912726603382408 /tmp/adamTestMvnQOhk7M0/1046576511147094257 /tmp/adamTestMvnQOhk7M0/1046576511147094257/sorted.vcf /tmp/adamTestMvnQOhk7M0/1046576511147094257/.sorted.vcf.crc /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite300482163067751089 /tmp/adamTestMvnQOhk7M0/TempSuite8123375641492663886.fq /tmp/adamTestMvnQOhk7M0/TempSuite8123375641492663886.fq/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite8123375641492663886.fq/.part-00000.crc /tmp/adamTestMvnQOhk7M0/TempSuite8123375641492663886.fq/part-00000 /tmp/adamTestMvnQOhk7M0/TempSuite8123375641492663886.fq/_SUCCESS /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite5862578241582932965 /tmp/adamTestMvnQOhk7M0/TempSuite6512163884223582088.adam /tmp/adamTestMvnQOhk7M0/TempSuite6512163884223582088.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite6512163884223582088.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite6512163884223582088.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite6512163884223582088.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite6512163884223582088.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite6512163884223582088.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite6512163884223582088.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite6512163884223582088.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite6512163884223582088.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/TempSuite6512163884223582088.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite6512163884223582088.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite6512163884223582088.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite6512163884223582088.adam/_header /tmp/adamTestMvnQOhk7M0/TempSuite6512163884223582088.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite5925891886582606883.adam /tmp/adamTestMvnQOhk7M0/TempSuite5925891886582606883.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite5925891886582606883.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite5925891886582606883.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite5925891886582606883.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite5925891886582606883.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite5925891886582606883.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite5925891886582606883.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite5925891886582606883.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite5925891886582606883.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite5925891886582606883.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite5925891886582606883.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite5925891886582606883.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/TempSuite5925891886582606883.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/TempSuite5925891886582606883.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite1466260386800183741.adam /tmp/adamTestMvnQOhk7M0/TempSuite1466260386800183741.adam/.part-00001-c066ae28-42c9-4ef2-9341-8992bf1861cd-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite1466260386800183741.adam/part-00001-c066ae28-42c9-4ef2-9341-8992bf1861cd-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite1466260386800183741.adam/part-00002-c066ae28-42c9-4ef2-9341-8992bf1861cd-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite1466260386800183741.adam/part-00000-c066ae28-42c9-4ef2-9341-8992bf1861cd-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite1466260386800183741.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite1466260386800183741.adam/.part-00000-c066ae28-42c9-4ef2-9341-8992bf1861cd-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite1466260386800183741.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite1466260386800183741.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite1466260386800183741.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite1466260386800183741.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite1466260386800183741.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite1466260386800183741.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/TempSuite1466260386800183741.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/TempSuite1466260386800183741.adam/.part-00002-c066ae28-42c9-4ef2-9341-8992bf1861cd-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite5982954085592535718 /tmp/adamTestMvnQOhk7M0/TempSuite3139652909069672046.sam /tmp/adamTestMvnQOhk7M0/TempSuite3139652909069672046.sam/part-r-00000.sam /tmp/adamTestMvnQOhk7M0/TempSuite3139652909069672046.sam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite3139652909069672046.sam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite3139652909069672046.sam/.part-r-00000.sam.crc /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite6040928398943657313 /tmp/adamTestMvnQOhk7M0/TempSuite130574474592384904 /tmp/adamTestMvnQOhk7M0/TempSuite5381046268002801638.bam /tmp/adamTestMvnQOhk7M0/TempSuite5381046268002801638.bam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite5381046268002801638.bam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite5381046268002801638.bam/.part-r-00000.bam.crc /tmp/adamTestMvnQOhk7M0/TempSuite5381046268002801638.bam/part-r-00000.bam /tmp/adamTestMvnQOhk7M0/TempSuite1028649760558769490 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6387518922073527681.gff3 /tmp/adamTestMvnQOhk7M0/TempSuite7336651986192582281 /tmp/adamTestMvnQOhk7M0/.FeatureDatasetFunctionsSuite8067766400745210190.gtf.crc /tmp/adamTestMvnQOhk7M0/TempSuite2119437735115846801.adam /tmp/adamTestMvnQOhk7M0/TempSuite2119437735115846801.adam/.part-00000-ce0ec23f-c67c-4927-b671-0f7bbe3fa8c1-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite2119437735115846801.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite2119437735115846801.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite2119437735115846801.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite2119437735115846801.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite2119437735115846801.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite2119437735115846801.adam/part-00000-ce0ec23f-c67c-4927-b671-0f7bbe3fa8c1-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite2119437735115846801.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite2119437735115846801.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/TempSuite2119437735115846801.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/TempSuite5710260776047204571 /tmp/adamTestMvnQOhk7M0/TempSuite8218442616132962661.adam /tmp/adamTestMvnQOhk7M0/TempSuite8218442616132962661.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite8218442616132962661.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite8218442616132962661.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite8218442616132962661.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite8218442616132962661.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite8218442616132962661.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite8218442616132962661.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite8218442616132962661.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite8218442616132962661.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite8218442616132962661.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite8218442616132962661.adam/_header /tmp/adamTestMvnQOhk7M0/TempSuite8218442616132962661.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite340407158793782326.adam /tmp/adamTestMvnQOhk7M0/TempSuite340407158793782326.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite340407158793782326.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite340407158793782326.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite340407158793782326.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite340407158793782326.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite340407158793782326.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite340407158793782326.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite340407158793782326.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite340407158793782326.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/TempSuite340407158793782326.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite340407158793782326.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite340407158793782326.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite340407158793782326.adam/_header /tmp/adamTestMvnQOhk7M0/TempSuite340407158793782326.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/4701623682932599822 /tmp/adamTestMvnQOhk7M0/4701623682932599822/predicate.2.adam /tmp/adamTestMvnQOhk7M0/4701623682932599822/predicate.2.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/4701623682932599822/predicate.2.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/4701623682932599822/predicate.2.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/4701623682932599822/predicate.2.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/4701623682932599822/predicate.2.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/4701623682932599822/predicate.2.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/4701623682932599822/predicate.2.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/4701623682932599822/predicate.2.adam/_metadata /tmp/adamTestMvnQOhk7M0/4701623682932599822/predicate.2.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/4701623682932599822/predicate.2.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/4701623682932599822/predicate.2.adam/_references.avro /tmp/adamTestMvnQOhk7M0/4701623682932599822/predicate.2.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/4701623682932599822/predicate.2.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/4701623682932599822/predicate.2.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite2444787291017909893 /tmp/adamTestMvnQOhk7M0/TempSuite1896937696097933428.bam /tmp/adamTestMvnQOhk7M0/TempSuite4365002051793687013.fq /tmp/adamTestMvnQOhk7M0/TempSuite692417183238921738 /tmp/adamTestMvnQOhk7M0/TempSuite3945399308947456932 /tmp/adamTestMvnQOhk7M0/TempSuite2190501500569162109.adam /tmp/adamTestMvnQOhk7M0/TempSuite2190501500569162109.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite2190501500569162109.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite2190501500569162109.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite2190501500569162109.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite2190501500569162109.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite2190501500569162109.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite2190501500569162109.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite2190501500569162109.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite2190501500569162109.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/TempSuite2190501500569162109.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite2190501500569162109.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite2190501500569162109.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite2190501500569162109.adam/_header /tmp/adamTestMvnQOhk7M0/TempSuite2190501500569162109.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7033780475686139559 /tmp/adamTestMvnQOhk7M0/3041489828417484614 /tmp/adamTestMvnQOhk7M0/3041489828417484614/predicate.1.adam /tmp/adamTestMvnQOhk7M0/3041489828417484614/predicate.1.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/3041489828417484614/predicate.1.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/3041489828417484614/predicate.1.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/3041489828417484614/predicate.1.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/3041489828417484614/predicate.1.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/3041489828417484614/predicate.1.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/3041489828417484614/predicate.1.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/3041489828417484614/predicate.1.adam/_metadata /tmp/adamTestMvnQOhk7M0/3041489828417484614/predicate.1.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/3041489828417484614/predicate.1.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/3041489828417484614/predicate.1.adam/_references.avro /tmp/adamTestMvnQOhk7M0/3041489828417484614/predicate.1.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/3041489828417484614/predicate.1.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/3041489828417484614/predicate.1.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite5583795560644497694 /tmp/adamTestMvnQOhk7M0/TempSuite5159859201484477265 /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite246369148060813604.fasta /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite246369148060813604.fasta/.part-00001.crc /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite246369148060813604.fasta/.part-00003.crc /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite246369148060813604.fasta/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite246369148060813604.fasta/part-00003 /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite246369148060813604.fasta/.part-00000.crc /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite246369148060813604.fasta/part-00000 /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite246369148060813604.fasta/part-00002 /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite246369148060813604.fasta/_SUCCESS /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite246369148060813604.fasta/part-00001 /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite246369148060813604.fasta/.part-00002.crc /tmp/adamTestMvnQOhk7M0/.TempSuite6965316427576072772.bam.crc /tmp/adamTestMvnQOhk7M0/TempSuite8469691793259068358 /tmp/adamTestMvnQOhk7M0/TempSuite1511544356175882234 /tmp/adamTestMvnQOhk7M0/TempSuite7655466650269656005.adam /tmp/adamTestMvnQOhk7M0/TempSuite7655466650269656005.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite7655466650269656005.adam/part-r-00001.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite7655466650269656005.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite7655466650269656005.adam/part-r-00002.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite7655466650269656005.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite7655466650269656005.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite7655466650269656005.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite7655466650269656005.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite7655466650269656005.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite7655466650269656005.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite7655466650269656005.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite7655466650269656005.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite7655466650269656005.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite7655466650269656005.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/TempSuite7655466650269656005.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite7655466650269656005.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite7655466650269656005.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite7655466650269656005.adam/part-r-00003.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite7655466650269656005.adam/_header /tmp/adamTestMvnQOhk7M0/TempSuite7655466650269656005.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite845189489821947224.adam /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite845189489821947224.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite845189489821947224.adam/part-r-00001.gz.parquet /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite845189489821947224.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite845189489821947224.adam/part-r-00002.gz.parquet /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite845189489821947224.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite845189489821947224.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite845189489821947224.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite845189489821947224.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite845189489821947224.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite845189489821947224.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite845189489821947224.adam/_metadata /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite845189489821947224.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite845189489821947224.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite845189489821947224.adam/_references.avro /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite845189489821947224.adam/part-r-00003.gz.parquet /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite845189489821947224.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite1823766473403056355 /tmp/adamTestMvnQOhk7M0/TempSuite920895736180087457 /tmp/adamTestMvnQOhk7M0/javaAC1601714908069724733 /tmp/adamTestMvnQOhk7M0/javaAC1601714908069724733/testRdd.variant.adam /tmp/adamTestMvnQOhk7M0/javaAC1601714908069724733/testRdd.variant.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/javaAC1601714908069724733/testRdd.variant.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/javaAC1601714908069724733/testRdd.variant.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/javaAC1601714908069724733/testRdd.variant.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/javaAC1601714908069724733/testRdd.variant.adam/._header.crc /tmp/adamTestMvnQOhk7M0/javaAC1601714908069724733/testRdd.variant.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/javaAC1601714908069724733/testRdd.variant.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/javaAC1601714908069724733/testRdd.variant.adam/_metadata /tmp/adamTestMvnQOhk7M0/javaAC1601714908069724733/testRdd.variant.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/javaAC1601714908069724733/testRdd.variant.adam/_references.avro /tmp/adamTestMvnQOhk7M0/javaAC1601714908069724733/testRdd.variant.adam/_header /tmp/adamTestMvnQOhk7M0/javaAC1601714908069724733/testRdd.variant.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite2165144507353018469 /tmp/adamTestMvnQOhk7M0/TempSuite6205355468127584924 /tmp/adamTestMvnQOhk7M0/TempSuite4293669916673067197.bed /tmp/adamTestMvnQOhk7M0/TempSuite4293669916673067197.bed/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite4293669916673067197.bed/.part-00000.crc /tmp/adamTestMvnQOhk7M0/TempSuite4293669916673067197.bed/part-00000 /tmp/adamTestMvnQOhk7M0/TempSuite4293669916673067197.bed/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite8261087836800616950 /tmp/adamTestMvnQOhk7M0/bqsr1.sam3388832607644362683.sam /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite8415179267210657499.narrowPeak /tmp/adamTestMvnQOhk7M0/TempSuite1240578689554351171.adam /tmp/adamTestMvnQOhk7M0/TempSuite1240578689554351171.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite1240578689554351171.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite1240578689554351171.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite1240578689554351171.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite1240578689554351171.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite1240578689554351171.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite1240578689554351171.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite1240578689554351171.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite1240578689554351171.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite1240578689554351171.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite1240578689554351171.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite1240578689554351171.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/TempSuite1240578689554351171.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/TempSuite1240578689554351171.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite3626697070549007726 /tmp/adamTestMvnQOhk7M0/TempSuite2444787291017909893.adam /tmp/adamTestMvnQOhk7M0/TempSuite2444787291017909893.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite2444787291017909893.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite2444787291017909893.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite2444787291017909893.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite2444787291017909893.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite2444787291017909893.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite2444787291017909893.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite2444787291017909893.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite2444787291017909893.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/TempSuite2444787291017909893.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite2444787291017909893.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite2444787291017909893.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite2444787291017909893.adam/_header /tmp/adamTestMvnQOhk7M0/TempSuite2444787291017909893.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite3587274299905719305.adam /tmp/adamTestMvnQOhk7M0/TempSuite3587274299905719305.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite3587274299905719305.adam/part-r-00001.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite3587274299905719305.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite3587274299905719305.adam/part-r-00002.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite3587274299905719305.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite3587274299905719305.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite3587274299905719305.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite3587274299905719305.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite3587274299905719305.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite3587274299905719305.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite3587274299905719305.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite3587274299905719305.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite3587274299905719305.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/TempSuite3587274299905719305.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite3587274299905719305.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite3587274299905719305.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite3587274299905719305.adam/part-r-00003.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite3587274299905719305.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite7823385008683292064fragments.adam /tmp/adamTestMvnQOhk7M0/TempSuite7823385008683292064fragments.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite7823385008683292064fragments.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite7823385008683292064fragments.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite7823385008683292064fragments.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite7823385008683292064fragments.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite7823385008683292064fragments.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite7823385008683292064fragments.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite7823385008683292064fragments.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite7823385008683292064fragments.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite7823385008683292064fragments.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite7823385008683292064fragments.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite7823385008683292064fragments.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/TempSuite7823385008683292064fragments.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/TempSuite7823385008683292064fragments.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/.FeatureDatasetFunctionsSuite4707042545925118779.bed.crc /tmp/adamTestMvnQOhk7M0/TempSuite6423953745571339774.adam /tmp/adamTestMvnQOhk7M0/TempSuite6423953745571339774.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite6423953745571339774.adam/part-r-00001.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite6423953745571339774.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite6423953745571339774.adam/part-r-00002.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite6423953745571339774.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite6423953745571339774.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite6423953745571339774.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite6423953745571339774.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite6423953745571339774.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite6423953745571339774.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite6423953745571339774.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite6423953745571339774.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite6423953745571339774.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/TempSuite6423953745571339774.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite6423953745571339774.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite6423953745571339774.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite6423953745571339774.adam/part-r-00003.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite6423953745571339774.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/.FeatureDatasetFunctionsSuite4430761566496285368.gff3.crc /tmp/adamTestMvnQOhk7M0/TempSuite5055755457282710692.bed /tmp/adamTestMvnQOhk7M0/TempSuite5055755457282710692.bed/.part-00001.crc /tmp/adamTestMvnQOhk7M0/TempSuite5055755457282710692.bed/.part-00003.crc /tmp/adamTestMvnQOhk7M0/TempSuite5055755457282710692.bed/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite5055755457282710692.bed/part-00003 /tmp/adamTestMvnQOhk7M0/TempSuite5055755457282710692.bed/.part-00000.crc /tmp/adamTestMvnQOhk7M0/TempSuite5055755457282710692.bed/part-00000 /tmp/adamTestMvnQOhk7M0/TempSuite5055755457282710692.bed/part-00002 /tmp/adamTestMvnQOhk7M0/TempSuite5055755457282710692.bed/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite5055755457282710692.bed/part-00001 /tmp/adamTestMvnQOhk7M0/TempSuite5055755457282710692.bed/.part-00002.crc /tmp/adamTestMvnQOhk7M0/TempSuite4173687087478923973 /tmp/adamTestMvnQOhk7M0/TempSuite587892602033778704.adam /tmp/adamTestMvnQOhk7M0/TempSuite587892602033778704.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite587892602033778704.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite587892602033778704.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite587892602033778704.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite587892602033778704.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite587892602033778704.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite587892602033778704.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite587892602033778704.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite587892602033778704.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/TempSuite587892602033778704.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite587892602033778704.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite587892602033778704.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite587892602033778704.adam/_header /tmp/adamTestMvnQOhk7M0/TempSuite587892602033778704.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite2008480538022926937 /tmp/adamTestMvnQOhk7M0/TempSuite7311440456984986808.adam /tmp/adamTestMvnQOhk7M0/TempSuite7311440456984986808.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite7311440456984986808.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite7311440456984986808.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite7311440456984986808.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite7311440456984986808.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite7311440456984986808.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite7311440456984986808.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite7311440456984986808.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite7311440456984986808.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite7311440456984986808.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite7311440456984986808.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite7311440456984986808.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/TempSuite7311440456984986808.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/TempSuite7311440456984986808.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite5679030208364375870 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6760080509365259499 /tmp/adamTestMvnQOhk7M0/TempSuite7581810835059914347.adam /tmp/adamTestMvnQOhk7M0/TempSuite7581810835059914347.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite7581810835059914347.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite7581810835059914347.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite7581810835059914347.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite7581810835059914347.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite7581810835059914347.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite7581810835059914347.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite7581810835059914347.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite7581810835059914347.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite7581810835059914347.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite7581810835059914347.adam/_header /tmp/adamTestMvnQOhk7M0/TempSuite7581810835059914347.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite5596691951353999591 /tmp/adamTestMvnQOhk7M0/TempSuite2201284548348463111 /tmp/adamTestMvnQOhk7M0/TempSuite4972362374578486618.adam /tmp/adamTestMvnQOhk7M0/TempSuite4972362374578486618.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite4972362374578486618.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite4972362374578486618.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite4972362374578486618.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite4972362374578486618.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite4972362374578486618.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite4972362374578486618.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite4972362374578486618.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite4972362374578486618.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite4972362374578486618.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite4972362374578486618.adam/_header /tmp/adamTestMvnQOhk7M0/TempSuite4972362374578486618.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite6550583043766045 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite782452868692471160.gtf /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite782452868692471160.gtf/.part-00001.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite782452868692471160.gtf/.part-00003.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite782452868692471160.gtf/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite782452868692471160.gtf/part-00003 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite782452868692471160.gtf/.part-00000.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite782452868692471160.gtf/part-00000 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite782452868692471160.gtf/part-00002 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite782452868692471160.gtf/_SUCCESS /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite782452868692471160.gtf/part-00001 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite782452868692471160.gtf/.part-00002.crc /tmp/adamTestMvnQOhk7M0/TempSuite5979052298647429161.fq /tmp/adamTestMvnQOhk7M0/TempSuite5979052298647429161.fq/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite5979052298647429161.fq/.part-00000.crc /tmp/adamTestMvnQOhk7M0/TempSuite5979052298647429161.fq/part-00000 /tmp/adamTestMvnQOhk7M0/TempSuite5979052298647429161.fq/_SUCCESS /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6387518922073527681 /tmp/adamTestMvnQOhk7M0/TempSuite1332027850581427303.bed /tmp/adamTestMvnQOhk7M0/TempSuite1332027850581427303.bed/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite1332027850581427303.bed/.part-00000.crc /tmp/adamTestMvnQOhk7M0/TempSuite1332027850581427303.bed/part-00000 /tmp/adamTestMvnQOhk7M0/TempSuite1332027850581427303.bed/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite9137366229846946261.adam /tmp/adamTestMvnQOhk7M0/TempSuite9137366229846946261.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite9137366229846946261.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite9137366229846946261.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite9137366229846946261.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite9137366229846946261.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite9137366229846946261.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite9137366229846946261.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite9137366229846946261.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite9137366229846946261.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite9137366229846946261.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite7876371196018612538 /tmp/adamTestMvnQOhk7M0/TempSuite4955181647764948938 /tmp/adamTestMvnQOhk7M0/TempSuite5552170470212396620 /tmp/adamTestMvnQOhk7M0/TempSuite5433570203478951913.adam /tmp/adamTestMvnQOhk7M0/TempSuite5433570203478951913.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite5433570203478951913.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite5433570203478951913.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite5433570203478951913.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite5433570203478951913.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite5433570203478951913.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite5433570203478951913.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite5433570203478951913.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite5433570203478951913.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite5433570203478951913.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite5433570203478951913.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite5433570203478951913.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/TempSuite5433570203478951913.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/TempSuite5433570203478951913.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite636320066132313630 /tmp/adamTestMvnQOhk7M0/TempSuite6070657965704801350 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite1655076614008819780.bed /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite1655076614008819780.bed/.part-00001.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite1655076614008819780.bed/.part-00003.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite1655076614008819780.bed/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite1655076614008819780.bed/part-00003 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite1655076614008819780.bed/.part-00000.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite1655076614008819780.bed/part-00000 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite1655076614008819780.bed/part-00002 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite1655076614008819780.bed/_SUCCESS /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite1655076614008819780.bed/part-00001 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite1655076614008819780.bed/.part-00002.crc /tmp/adamTestMvnQOhk7M0/TempSuite5862887562136186907.adam /tmp/adamTestMvnQOhk7M0/TempSuite5862887562136186907.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite5862887562136186907.adam/part-00000-e05e8357-b9af-43b0-a080-eca8b39780a0-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite5862887562136186907.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite5862887562136186907.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite5862887562136186907.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite5862887562136186907.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite5862887562136186907.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite5862887562136186907.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/TempSuite5862887562136186907.adam/.part-00000-e05e8357-b9af-43b0-a080-eca8b39780a0-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite5862887562136186907.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/TempSuite2682899587967386516.bed /tmp/adamTestMvnQOhk7M0/TempSuite2682899587967386516.bed/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite2682899587967386516.bed/.part-00000.crc /tmp/adamTestMvnQOhk7M0/TempSuite2682899587967386516.bed/part-00000 /tmp/adamTestMvnQOhk7M0/TempSuite2682899587967386516.bed/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite6539417414116587357.bed /tmp/adamTestMvnQOhk7M0/TempSuite6539417414116587357.bed/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite6539417414116587357.bed/.part-00000.crc /tmp/adamTestMvnQOhk7M0/TempSuite6539417414116587357.bed/part-00000 /tmp/adamTestMvnQOhk7M0/TempSuite6539417414116587357.bed/_SUCCESS /tmp/adamTestMvnQOhk7M0/8920118021124001266 /tmp/adamTestMvnQOhk7M0/8920118021124001266/.ordered.sam.crc /tmp/adamTestMvnQOhk7M0/8920118021124001266/ordered.sam /tmp/adamTestMvnQOhk7M0/4266777009808424321 /tmp/adamTestMvnQOhk7M0/4266777009808424321/genotypes.lex.adam /tmp/adamTestMvnQOhk7M0/4266777009808424321/genotypes.lex.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/4266777009808424321/genotypes.lex.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/4266777009808424321/genotypes.lex.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/4266777009808424321/genotypes.lex.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/4266777009808424321/genotypes.lex.adam/._header.crc /tmp/adamTestMvnQOhk7M0/4266777009808424321/genotypes.lex.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/4266777009808424321/genotypes.lex.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/4266777009808424321/genotypes.lex.adam/_metadata /tmp/adamTestMvnQOhk7M0/4266777009808424321/genotypes.lex.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/4266777009808424321/genotypes.lex.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/4266777009808424321/genotypes.lex.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/4266777009808424321/genotypes.lex.adam/_references.avro /tmp/adamTestMvnQOhk7M0/4266777009808424321/genotypes.lex.adam/_header /tmp/adamTestMvnQOhk7M0/4266777009808424321/genotypes.lex.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite786856176012807642.fastq /tmp/adamTestMvnQOhk7M0/TempSuite4377172455898514185.adam /tmp/adamTestMvnQOhk7M0/TempSuite4377172455898514185.adam/part-00002-e8da3f1d-2f35-4fae-bffa-c8f427b78f10-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite4377172455898514185.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite4377172455898514185.adam/.part-00001-e8da3f1d-2f35-4fae-bffa-c8f427b78f10-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite4377172455898514185.adam/part-00000-e8da3f1d-2f35-4fae-bffa-c8f427b78f10-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite4377172455898514185.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite4377172455898514185.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite4377172455898514185.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite4377172455898514185.adam/.part-00000-e8da3f1d-2f35-4fae-bffa-c8f427b78f10-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite4377172455898514185.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite4377172455898514185.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite4377172455898514185.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/TempSuite4377172455898514185.adam/part-00001-e8da3f1d-2f35-4fae-bffa-c8f427b78f10-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite4377172455898514185.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/TempSuite4377172455898514185.adam/.part-00002-e8da3f1d-2f35-4fae-bffa-c8f427b78f10-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite4313920202242782220.adam /tmp/adamTestMvnQOhk7M0/TempSuite4313920202242782220.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite4313920202242782220.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite4313920202242782220.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite4313920202242782220.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite4313920202242782220.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite4313920202242782220.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite4313920202242782220.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite4313920202242782220.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite4313920202242782220.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/TempSuite4313920202242782220.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite4313920202242782220.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite4313920202242782220.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite4313920202242782220.adam/_header /tmp/adamTestMvnQOhk7M0/TempSuite4313920202242782220.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/javaAC5875935491952220986 /tmp/adamTestMvnQOhk7M0/javaAC5875935491952220986/testRdd.slices.adam /tmp/adamTestMvnQOhk7M0/javaAC5875935491952220986/testRdd.slices.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/javaAC5875935491952220986/testRdd.slices.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/javaAC5875935491952220986/testRdd.slices.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/javaAC5875935491952220986/testRdd.slices.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/javaAC5875935491952220986/testRdd.slices.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/javaAC5875935491952220986/testRdd.slices.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/javaAC5875935491952220986/testRdd.slices.adam/_metadata /tmp/adamTestMvnQOhk7M0/javaAC5875935491952220986/testRdd.slices.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/javaAC5875935491952220986/testRdd.slices.adam/_references.avro /tmp/adamTestMvnQOhk7M0/javaAC5875935491952220986/testRdd.slices.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite8174323204503826026.adam /tmp/adamTestMvnQOhk7M0/TempSuite8174323204503826026.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite8174323204503826026.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite8174323204503826026.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite8174323204503826026.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite8174323204503826026.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite8174323204503826026.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite8174323204503826026.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite8174323204503826026.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite8174323204503826026.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite8174323204503826026.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite8174323204503826026.adam/_header /tmp/adamTestMvnQOhk7M0/TempSuite8174323204503826026.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite3447929683557097194.sam /tmp/adamTestMvnQOhk7M0/TempSuite3447929683557097194.sam/part-r-00000.sam /tmp/adamTestMvnQOhk7M0/TempSuite3447929683557097194.sam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite3447929683557097194.sam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite3447929683557097194.sam/.part-r-00000.sam.crc /tmp/adamTestMvnQOhk7M0/TempSuite1710024179811758518 /tmp/adamTestMvnQOhk7M0/TempSuite8692455297624104991.sam /tmp/adamTestMvnQOhk7M0/TempSuite8692455297624104991.sam/part-r-00000.sam /tmp/adamTestMvnQOhk7M0/TempSuite8692455297624104991.sam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite8692455297624104991.sam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite8692455297624104991.sam/.part-r-00000.sam.crc /tmp/adamTestMvnQOhk7M0/802761736025789335 /tmp/adamTestMvnQOhk7M0/802761736025789335/genotypes.adam /tmp/adamTestMvnQOhk7M0/802761736025789335/genotypes.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/802761736025789335/genotypes.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/802761736025789335/genotypes.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/802761736025789335/genotypes.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/802761736025789335/genotypes.adam/._header.crc /tmp/adamTestMvnQOhk7M0/802761736025789335/genotypes.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/802761736025789335/genotypes.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/802761736025789335/genotypes.adam/_metadata /tmp/adamTestMvnQOhk7M0/802761736025789335/genotypes.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/802761736025789335/genotypes.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/802761736025789335/genotypes.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/802761736025789335/genotypes.adam/_references.avro /tmp/adamTestMvnQOhk7M0/802761736025789335/genotypes.adam/_header /tmp/adamTestMvnQOhk7M0/802761736025789335/genotypes.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite3969280530056745575.fasta /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite3969280530056745575.fasta/.part-00001.crc /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite3969280530056745575.fasta/.part-00003.crc /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite3969280530056745575.fasta/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite3969280530056745575.fasta/part-00003 /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite3969280530056745575.fasta/.part-00000.crc /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite3969280530056745575.fasta/part-00000 /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite3969280530056745575.fasta/part-00002 /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite3969280530056745575.fasta/_SUCCESS /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite3969280530056745575.fasta/part-00001 /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite3969280530056745575.fasta/.part-00002.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6039081555877286104 /tmp/adamTestMvnQOhk7M0/TempSuite116976970084876541 /tmp/adamTestMvnQOhk7M0/TempSuite1896937696097933428 /tmp/adamTestMvnQOhk7M0/TempSuite2322273981625745694 /tmp/adamTestMvnQOhk7M0/1015389630932199998 /tmp/adamTestMvnQOhk7M0/1015389630932199998/.ordered.sam.crc /tmp/adamTestMvnQOhk7M0/1015389630932199998/ordered.sam /tmp/adamTestMvnQOhk7M0/.TempSuite3017990681752298371.sam.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6073319493758017522.gff3 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6073319493758017522.gff3/.part-00001.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6073319493758017522.gff3/.part-00003.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6073319493758017522.gff3/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6073319493758017522.gff3/part-00003 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6073319493758017522.gff3/.part-00000.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6073319493758017522.gff3/part-00000 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6073319493758017522.gff3/part-00002 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6073319493758017522.gff3/_SUCCESS /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6073319493758017522.gff3/part-00001 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6073319493758017522.gff3/.part-00002.crc /tmp/adamTestMvnQOhk7M0/TempSuite4657298941472001864.adam /tmp/adamTestMvnQOhk7M0/TempSuite4657298941472001864.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite4657298941472001864.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite4657298941472001864.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite4657298941472001864.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite4657298941472001864.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite4657298941472001864.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite4657298941472001864.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite4657298941472001864.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/TempSuite4657298941472001864.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite4657298941472001864.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite4657298941472001864.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite4657298941472001864.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite4426810594497335910 /tmp/adamTestMvnQOhk7M0/TempSuite3397054518667381035 /tmp/adamTestMvnQOhk7M0/TempSuite804139404498468978.adam /tmp/adamTestMvnQOhk7M0/TempSuite804139404498468978.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite804139404498468978.adam/.part-00002-ada0e5f4-a767-425d-80b3-56c39ba963e9-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite804139404498468978.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite804139404498468978.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite804139404498468978.adam/.part-00001-ada0e5f4-a767-425d-80b3-56c39ba963e9-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite804139404498468978.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite804139404498468978.adam/part-00001-ada0e5f4-a767-425d-80b3-56c39ba963e9-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite804139404498468978.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite804139404498468978.adam/part-00002-ada0e5f4-a767-425d-80b3-56c39ba963e9-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite804139404498468978.adam/.part-00000-ada0e5f4-a767-425d-80b3-56c39ba963e9-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite804139404498468978.adam/_header /tmp/adamTestMvnQOhk7M0/TempSuite804139404498468978.adam/part-00000-ada0e5f4-a767-425d-80b3-56c39ba963e9-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite4972362374578486618 /tmp/adamTestMvnQOhk7M0/TempSuite1205001865971210275 /tmp/adamTestMvnQOhk7M0/TempSuite5269411139955729674 /tmp/adamTestMvnQOhk7M0/TempSuite4994300844235719777 /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite4697577024388988579 /tmp/adamTestMvnQOhk7M0/TempSuite7706671918338010194.adam /tmp/adamTestMvnQOhk7M0/TempSuite7706671918338010194.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite7706671918338010194.adam/part-r-00001.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite7706671918338010194.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite7706671918338010194.adam/part-r-00002.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite7706671918338010194.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite7706671918338010194.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite7706671918338010194.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite7706671918338010194.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite7706671918338010194.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite7706671918338010194.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite7706671918338010194.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite7706671918338010194.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite7706671918338010194.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite7706671918338010194.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite7706671918338010194.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite7706671918338010194.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite7706671918338010194.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/TempSuite7706671918338010194.adam/part-r-00003.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite7706671918338010194.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/TempSuite7706671918338010194.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite7130771922269863422.fasta /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite7130771922269863422.fasta/.part-00001.crc /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite7130771922269863422.fasta/.part-00003.crc /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite7130771922269863422.fasta/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite7130771922269863422.fasta/part-00003 /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite7130771922269863422.fasta/.part-00000.crc /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite7130771922269863422.fasta/part-00000 /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite7130771922269863422.fasta/part-00002 /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite7130771922269863422.fasta/_SUCCESS /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite7130771922269863422.fasta/part-00001 /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite7130771922269863422.fasta/.part-00002.crc /tmp/adamTestMvnQOhk7M0/8241202552822384600 /tmp/adamTestMvnQOhk7M0/8241202552822384600/out.bam /tmp/adamTestMvnQOhk7M0/8241202552822384600/out.bam_head /tmp/adamTestMvnQOhk7M0/8241202552822384600/.out.bam.crc /tmp/adamTestMvnQOhk7M0/8241202552822384600/out.bam_tail /tmp/adamTestMvnQOhk7M0/8241202552822384600/out.bam_tail/.part-r-00002.bam.crc /tmp/adamTestMvnQOhk7M0/8241202552822384600/out.bam_tail/part-r-00002.bam /tmp/adamTestMvnQOhk7M0/8241202552822384600/out.bam_tail/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/8241202552822384600/out.bam_tail/part-r-00001.bam /tmp/adamTestMvnQOhk7M0/8241202552822384600/out.bam_tail/_SUCCESS /tmp/adamTestMvnQOhk7M0/8241202552822384600/out.bam_tail/part-r-00003.bam /tmp/adamTestMvnQOhk7M0/8241202552822384600/out.bam_tail/.part-r-00003.bam.crc /tmp/adamTestMvnQOhk7M0/8241202552822384600/out.bam_tail/.part-r-00000.bam.crc /tmp/adamTestMvnQOhk7M0/8241202552822384600/out.bam_tail/part-r-00000.bam /tmp/adamTestMvnQOhk7M0/8241202552822384600/out.bam_tail/.part-r-00001.bam.crc /tmp/adamTestMvnQOhk7M0/8241202552822384600/.out.bam_head.crc /tmp/adamTestMvnQOhk7M0/TempSuite7400974479333463199.adam /tmp/adamTestMvnQOhk7M0/TempSuite7400974479333463199.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite7400974479333463199.adam/part-00000-c67c8a28-904f-47bf-887a-259e556378bd-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite7400974479333463199.adam/.part-00000-c67c8a28-904f-47bf-887a-259e556378bd-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite7400974479333463199.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite7400974479333463199.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite7400974479333463199.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite3744361375869660974.adam /tmp/adamTestMvnQOhk7M0/TempSuite3744361375869660974.adam/.part-00000-53998e7b-b8e9-495d-afdd-35d959b85072-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite3744361375869660974.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite3744361375869660974.adam/.part-00001-53998e7b-b8e9-495d-afdd-35d959b85072-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite3744361375869660974.adam/.part-00002-53998e7b-b8e9-495d-afdd-35d959b85072-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite3744361375869660974.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite3744361375869660974.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite3744361375869660974.adam/part-00000-53998e7b-b8e9-495d-afdd-35d959b85072-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite3744361375869660974.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite3744361375869660974.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite3744361375869660974.adam/part-00001-53998e7b-b8e9-495d-afdd-35d959b85072-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite3744361375869660974.adam/_header /tmp/adamTestMvnQOhk7M0/TempSuite3744361375869660974.adam/part-00002-53998e7b-b8e9-495d-afdd-35d959b85072-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/2988225237855848612 /tmp/adamTestMvnQOhk7M0/2988225237855848612/.artificial.cram.crc /tmp/adamTestMvnQOhk7M0/2988225237855848612/artificial.cram /tmp/adamTestMvnQOhk7M0/TempSuite2463036242313517716.adam /tmp/adamTestMvnQOhk7M0/TempSuite2463036242313517716.adam/part-00002-910ac575-418b-4100-9f45-5555d9c4ffdb-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite2463036242313517716.adam/part-00001-910ac575-418b-4100-9f45-5555d9c4ffdb-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite2463036242313517716.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite2463036242313517716.adam/.part-00001-910ac575-418b-4100-9f45-5555d9c4ffdb-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite2463036242313517716.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite2463036242313517716.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite2463036242313517716.adam/.part-00002-910ac575-418b-4100-9f45-5555d9c4ffdb-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite2463036242313517716.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite2463036242313517716.adam/.part-00000-910ac575-418b-4100-9f45-5555d9c4ffdb-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite2463036242313517716.adam/part-00000-910ac575-418b-4100-9f45-5555d9c4ffdb-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite2463036242313517716.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/TempSuite2463036242313517716.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite2463036242313517716.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite2463036242313517716.adam/_header /tmp/adamTestMvnQOhk7M0/TempSuite3687692684357995479 /tmp/adamTestMvnQOhk7M0/TempSuite3504787196893364903 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite4300455124728556527 /tmp/adamTestMvnQOhk7M0/ordered.sam8245630560381414739.sam /tmp/adamTestMvnQOhk7M0/TempSuite136390844695193024 /tmp/adamTestMvnQOhk7M0/TempSuite8547662888689599438.vcf /tmp/adamTestMvnQOhk7M0/TempSuite8547662888689599438.vcf/.part-r-00000.crc /tmp/adamTestMvnQOhk7M0/TempSuite8547662888689599438.vcf/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite8547662888689599438.vcf/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite8547662888689599438.vcf/part-r-00000 /tmp/adamTestMvnQOhk7M0/TempSuite2702986696770436029.adam /tmp/adamTestMvnQOhk7M0/TempSuite2702986696770436029.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite2702986696770436029.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite2702986696770436029.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite2702986696770436029.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite2702986696770436029.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite2702986696770436029.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite2702986696770436029.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite2702986696770436029.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite2702986696770436029.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/TempSuite2702986696770436029.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite2702986696770436029.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite2702986696770436029.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite2702986696770436029.adam/_header /tmp/adamTestMvnQOhk7M0/TempSuite2702986696770436029.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/unordered.sam4061536785150652594.sam /tmp/adamTestMvnQOhk7M0/5120276451153186080 /tmp/adamTestMvnQOhk7M0/5120276451153186080/predicate.3.adam /tmp/adamTestMvnQOhk7M0/5120276451153186080/predicate.3.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/5120276451153186080/predicate.3.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/5120276451153186080/predicate.3.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/5120276451153186080/predicate.3.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/5120276451153186080/predicate.3.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/5120276451153186080/predicate.3.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/5120276451153186080/predicate.3.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/5120276451153186080/predicate.3.adam/_metadata /tmp/adamTestMvnQOhk7M0/5120276451153186080/predicate.3.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/5120276451153186080/predicate.3.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/5120276451153186080/predicate.3.adam/_references.avro /tmp/adamTestMvnQOhk7M0/5120276451153186080/predicate.3.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/5120276451153186080/predicate.3.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/5120276451153186080/predicate.3.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite170844752421492035reads12.sam_2 /tmp/adamTestMvnQOhk7M0/TempSuite3688836958654127545fragments.adam /tmp/adamTestMvnQOhk7M0/TempSuite3688836958654127545fragments.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite3688836958654127545fragments.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite3688836958654127545fragments.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite3688836958654127545fragments.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite3688836958654127545fragments.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite3688836958654127545fragments.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite3688836958654127545fragments.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite3688836958654127545fragments.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite3688836958654127545fragments.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite3688836958654127545fragments.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite3688836958654127545fragments.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite3688836958654127545fragments.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/TempSuite3688836958654127545fragments.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/TempSuite3688836958654127545fragments.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite8191948016259330414 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite8164412303953859811 /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite2737868469884615073.fasta /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite4487067265352416864.gtf /tmp/adamTestMvnQOhk7M0/TempSuite7423657920593947271.adam /tmp/adamTestMvnQOhk7M0/TempSuite7423657920593947271.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite7423657920593947271.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite7423657920593947271.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite7423657920593947271.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite7423657920593947271.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite7423657920593947271.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite7423657920593947271.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite7423657920593947271.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite7423657920593947271.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/TempSuite7423657920593947271.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite7423657920593947271.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite7423657920593947271.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite7423657920593947271.adam/_header /tmp/adamTestMvnQOhk7M0/TempSuite7423657920593947271.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite4102606880640382086 /tmp/adamTestMvnQOhk7M0/random.vcf4454128267532404653.vcf /tmp/adamTestMvnQOhk7M0/.TempSuite9065339108612320860.bam.crc /tmp/adamTestMvnQOhk7M0/TempSuite5982843511726386469.bam /tmp/adamTestMvnQOhk7M0/TempSuite5982843511726386469.bam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite5982843511726386469.bam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite5982843511726386469.bam/.part-r-00000.bam.crc /tmp/adamTestMvnQOhk7M0/TempSuite5982843511726386469.bam/part-r-00000.bam /tmp/adamTestMvnQOhk7M0/TempSuite8625363476234435141_2.fq /tmp/adamTestMvnQOhk7M0/TempSuite8625363476234435141_2.fq/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite8625363476234435141_2.fq/.part-00000.crc /tmp/adamTestMvnQOhk7M0/TempSuite8625363476234435141_2.fq/part-00000 /tmp/adamTestMvnQOhk7M0/TempSuite8625363476234435141_2.fq/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite6539417414116587357 /tmp/adamTestMvnQOhk7M0/.ReadDatasetSuite786856176012807642.fastq.crc /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite5285543531822908876 /tmp/adamTestMvnQOhk7M0/TempSuite7258149274076661047 /tmp/adamTestMvnQOhk7M0/TempSuite4994300844235719777.adam /tmp/adamTestMvnQOhk7M0/TempSuite4994300844235719777.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite4994300844235719777.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite4994300844235719777.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite4994300844235719777.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite4994300844235719777.adam/.part-00000-4efeab92-69fc-4208-be5f-f66bb2364997-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite4994300844235719777.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/TempSuite4994300844235719777.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite4994300844235719777.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite4994300844235719777.adam/part-00000-4efeab92-69fc-4208-be5f-f66bb2364997-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite4994300844235719777.adam/_header /tmp/adamTestMvnQOhk7M0/gencode.v7.annotation.trunc10.bed2988818855083758608.v7.annotation.trunc10.bed /tmp/adamTestMvnQOhk7M0/TempSuite3017990681752298371 /tmp/adamTestMvnQOhk7M0/TempSuite886270167706606969 /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite246369148060813604 /tmp/adamTestMvnQOhk7M0/TempSuite3350515936433615520 /tmp/adamTestMvnQOhk7M0/TempSuite7823385008683292064 /tmp/adamTestMvnQOhk7M0/TempSuite5081387745778232147.adam /tmp/adamTestMvnQOhk7M0/TempSuite5081387745778232147.adam/part-00000-dd0143c9-1883-41cb-971f-30c4a1edd6bc-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite5081387745778232147.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite5081387745778232147.adam/.part-00000-dd0143c9-1883-41cb-971f-30c4a1edd6bc-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite5081387745778232147.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite5081387745778232147.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite5081387745778232147.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite5455814344482665078 /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite7902483167454591147 /tmp/adamTestMvnQOhk7M0/TempSuite7117343357255811070.adam /tmp/adamTestMvnQOhk7M0/TempSuite7117343357255811070.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite7117343357255811070.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite7117343357255811070.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite7117343357255811070.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite7117343357255811070.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite7117343357255811070.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite7117343357255811070.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite7117343357255811070.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite7117343357255811070.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/TempSuite7117343357255811070.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite7117343357255811070.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite7117343357255811070.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite7117343357255811070.adam/_header /tmp/adamTestMvnQOhk7M0/TempSuite7117343357255811070.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite7479322249942876469.adam /tmp/adamTestMvnQOhk7M0/TempSuite7479322249942876469.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite7479322249942876469.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite7479322249942876469.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite7479322249942876469.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite7479322249942876469.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite7479322249942876469.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite7479322249942876469.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite7479322249942876469.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite7479322249942876469.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite7479322249942876469.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite7479322249942876469.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite7479322249942876469.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/TempSuite7479322249942876469.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/TempSuite7479322249942876469.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite2527879293720784441.fa /tmp/adamTestMvnQOhk7M0/TempSuite2527879293720784441.fa/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite2527879293720784441.fa/.part-00000.crc /tmp/adamTestMvnQOhk7M0/TempSuite2527879293720784441.fa/part-00000 /tmp/adamTestMvnQOhk7M0/TempSuite2527879293720784441.fa/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite6181963767298098108 /tmp/adamTestMvnQOhk7M0/TempSuite2997823274969117938 /tmp/adamTestMvnQOhk7M0/small.sam1995810690892202947.sam /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite5104770600774147220 /tmp/adamTestMvnQOhk7M0/TempSuite1439733097889170232 /tmp/adamTestMvnQOhk7M0/9174956658393485422 /tmp/adamTestMvnQOhk7M0/9174956658393485422/predicate.3.adam /tmp/adamTestMvnQOhk7M0/9174956658393485422/predicate.3.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/9174956658393485422/predicate.3.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/9174956658393485422/predicate.3.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/9174956658393485422/predicate.3.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/9174956658393485422/predicate.3.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/9174956658393485422/predicate.3.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/9174956658393485422/predicate.3.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/9174956658393485422/predicate.3.adam/_metadata /tmp/adamTestMvnQOhk7M0/9174956658393485422/predicate.3.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/9174956658393485422/predicate.3.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/9174956658393485422/predicate.3.adam/_references.avro /tmp/adamTestMvnQOhk7M0/9174956658393485422/predicate.3.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/9174956658393485422/predicate.3.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/9174956658393485422/predicate.3.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/8587679151495765013 /tmp/adamTestMvnQOhk7M0/8587679151495765013/sorted.lex.vcf /tmp/adamTestMvnQOhk7M0/8587679151495765013/.sorted.lex.vcf.crc /tmp/adamTestMvnQOhk7M0/TempSuite4245710765097213018 /tmp/adamTestMvnQOhk7M0/4762405162170124082 /tmp/adamTestMvnQOhk7M0/4762405162170124082/genotypes.nested-annotations.adam /tmp/adamTestMvnQOhk7M0/4762405162170124082/genotypes.nested-annotations.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/4762405162170124082/genotypes.nested-annotations.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/4762405162170124082/genotypes.nested-annotations.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/4762405162170124082/genotypes.nested-annotations.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/4762405162170124082/genotypes.nested-annotations.adam/._header.crc /tmp/adamTestMvnQOhk7M0/4762405162170124082/genotypes.nested-annotations.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/4762405162170124082/genotypes.nested-annotations.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/4762405162170124082/genotypes.nested-annotations.adam/_metadata /tmp/adamTestMvnQOhk7M0/4762405162170124082/genotypes.nested-annotations.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/4762405162170124082/genotypes.nested-annotations.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/4762405162170124082/genotypes.nested-annotations.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/4762405162170124082/genotypes.nested-annotations.adam/_references.avro /tmp/adamTestMvnQOhk7M0/4762405162170124082/genotypes.nested-annotations.adam/_header /tmp/adamTestMvnQOhk7M0/4762405162170124082/genotypes.nested-annotations.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite168599982526042693.bed /tmp/adamTestMvnQOhk7M0/TempSuite168599982526042693.bed/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite168599982526042693.bed/.part-00000.crc /tmp/adamTestMvnQOhk7M0/TempSuite168599982526042693.bed/part-00000 /tmp/adamTestMvnQOhk7M0/TempSuite168599982526042693.bed/_SUCCESS /tmp/adamTestMvnQOhk7M0/1568827618643-0 /tmp/adamTestMvnQOhk7M0/1568827618643-0/test_single.vcf /tmp/adamTestMvnQOhk7M0/1568827618643-0/test.vcf /tmp/adamTestMvnQOhk7M0/1568827618643-0/test.vcf/.part-r-00000.crc /tmp/adamTestMvnQOhk7M0/1568827618643-0/test.vcf/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/1568827618643-0/test.vcf/_SUCCESS /tmp/adamTestMvnQOhk7M0/1568827618643-0/test.vcf/part-r-00000 /tmp/adamTestMvnQOhk7M0/1568827618643-0/.test_single.vcf.crc /tmp/adamTestMvnQOhk7M0/TempSuite8669953637048688424 /tmp/adamTestMvnQOhk7M0/TempSuite2744001901340459876 /tmp/adamTestMvnQOhk7M0/TempSuite2074372750793977924 /tmp/adamTestMvnQOhk7M0/TempSuite3855121510644068841.adam /tmp/adamTestMvnQOhk7M0/TempSuite3855121510644068841.adam/.part-00000-943de22b-fcad-453a-98d2-e4821dbc5bcb-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite3855121510644068841.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite3855121510644068841.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite3855121510644068841.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite3855121510644068841.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite3855121510644068841.adam/part-00000-943de22b-fcad-453a-98d2-e4821dbc5bcb-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite3855121510644068841.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite3855121510644068841.adam/_header /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite4696924264856646376.narrowPeak /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite4696924264856646376.narrowPeak/.part-00001.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite4696924264856646376.narrowPeak/.part-00003.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite4696924264856646376.narrowPeak/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite4696924264856646376.narrowPeak/part-00003 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite4696924264856646376.narrowPeak/.part-00000.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite4696924264856646376.narrowPeak/part-00000 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite4696924264856646376.narrowPeak/part-00002 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite4696924264856646376.narrowPeak/_SUCCESS /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite4696924264856646376.narrowPeak/part-00001 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite4696924264856646376.narrowPeak/.part-00002.crc /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite2737868469884615073 /tmp/adamTestMvnQOhk7M0/small.vcf1166935503428583113.vcf /tmp/adamTestMvnQOhk7M0/3528895090854200877 /tmp/adamTestMvnQOhk7M0/3528895090854200877/.ordered.sam.crc /tmp/adamTestMvnQOhk7M0/3528895090854200877/ordered.sam /tmp/adamTestMvnQOhk7M0/TempSuite737417163278877309.adam /tmp/adamTestMvnQOhk7M0/TempSuite737417163278877309.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite737417163278877309.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite737417163278877309.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite737417163278877309.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite737417163278877309.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite737417163278877309.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite737417163278877309.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite737417163278877309.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite737417163278877309.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite737417163278877309.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite737417163278877309.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite737417163278877309.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/TempSuite737417163278877309.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/TempSuite737417163278877309.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite8961696204773805577.adam /tmp/adamTestMvnQOhk7M0/TempSuite8961696204773805577.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite8961696204773805577.adam/part-r-00001.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite8961696204773805577.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite8961696204773805577.adam/part-r-00002.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite8961696204773805577.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite8961696204773805577.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite8961696204773805577.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite8961696204773805577.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite8961696204773805577.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite8961696204773805577.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite8961696204773805577.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite8961696204773805577.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite8961696204773805577.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite8961696204773805577.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/TempSuite8961696204773805577.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite8961696204773805577.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite8961696204773805577.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite8961696204773805577.adam/part-r-00003.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite8961696204773805577.adam/_header /tmp/adamTestMvnQOhk7M0/TempSuite8961696204773805577.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite5172063230902050536.adam /tmp/adamTestMvnQOhk7M0/TempSuite5172063230902050536.adam/.part-00000-079a795a-c854-48e3-96dd-7243f145c596-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite5172063230902050536.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite5172063230902050536.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite5172063230902050536.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite5172063230902050536.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite5172063230902050536.adam/part-00000-079a795a-c854-48e3-96dd-7243f145c596-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/javaAC323186429293990385 /tmp/adamTestMvnQOhk7M0/javaAC323186429293990385/testRdd.genotype.adam /tmp/adamTestMvnQOhk7M0/javaAC323186429293990385/testRdd.genotype.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/javaAC323186429293990385/testRdd.genotype.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/javaAC323186429293990385/testRdd.genotype.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/javaAC323186429293990385/testRdd.genotype.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/javaAC323186429293990385/testRdd.genotype.adam/._header.crc /tmp/adamTestMvnQOhk7M0/javaAC323186429293990385/testRdd.genotype.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/javaAC323186429293990385/testRdd.genotype.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/javaAC323186429293990385/testRdd.genotype.adam/_metadata /tmp/adamTestMvnQOhk7M0/javaAC323186429293990385/testRdd.genotype.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/javaAC323186429293990385/testRdd.genotype.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/javaAC323186429293990385/testRdd.genotype.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/javaAC323186429293990385/testRdd.genotype.adam/_references.avro /tmp/adamTestMvnQOhk7M0/javaAC323186429293990385/testRdd.genotype.adam/_header /tmp/adamTestMvnQOhk7M0/javaAC323186429293990385/testRdd.genotype.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/artificial.cram6204019599109864624.cram /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite5739827841749314075 /tmp/adamTestMvnQOhk7M0/TempSuite1005375794098428537 /tmp/adamTestMvnQOhk7M0/TempSuite5160202512996665195.adam /tmp/adamTestMvnQOhk7M0/TempSuite5160202512996665195.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite5160202512996665195.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite5160202512996665195.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite5160202512996665195.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite5160202512996665195.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite5160202512996665195.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite5160202512996665195.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite5160202512996665195.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite5160202512996665195.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite5160202512996665195.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite5160202512996665195.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite5160202512996665195.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/TempSuite5160202512996665195.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/TempSuite5160202512996665195.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/sample_coverage.bed3711550978734838501.bed /tmp/adamTestMvnQOhk7M0/TempSuite6773190068945032925.adam /tmp/adamTestMvnQOhk7M0/TempSuite6773190068945032925.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite6773190068945032925.adam/part-r-00001.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite6773190068945032925.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite6773190068945032925.adam/part-r-00002.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite6773190068945032925.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite6773190068945032925.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite6773190068945032925.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite6773190068945032925.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite6773190068945032925.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite6773190068945032925.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite6773190068945032925.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite6773190068945032925.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite6773190068945032925.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite6773190068945032925.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/TempSuite6773190068945032925.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite6773190068945032925.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite6773190068945032925.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite6773190068945032925.adam/part-r-00003.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite6773190068945032925.adam/_header /tmp/adamTestMvnQOhk7M0/TempSuite6773190068945032925.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite6819624415790837819.adam /tmp/adamTestMvnQOhk7M0/TempSuite6819624415790837819.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite6819624415790837819.adam/part-r-00001.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite6819624415790837819.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite6819624415790837819.adam/part-r-00002.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite6819624415790837819.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite6819624415790837819.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite6819624415790837819.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite6819624415790837819.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite6819624415790837819.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite6819624415790837819.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite6819624415790837819.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite6819624415790837819.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite6819624415790837819.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite6819624415790837819.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite6819624415790837819.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite6819624415790837819.adam/part-r-00003.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite6819624415790837819.adam/_header /tmp/adamTestMvnQOhk7M0/TempSuite6819624415790837819.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite1856071205356031025 /tmp/adamTestMvnQOhk7M0/TempSuite2702986696770436029 /tmp/adamTestMvnQOhk7M0/TempSuite804139404498468978 /tmp/adamTestMvnQOhk7M0/TempSuite8658305197354592292 /tmp/adamTestMvnQOhk7M0/TempSuite6205355468127584924.bed /tmp/adamTestMvnQOhk7M0/TempSuite6205355468127584924.bed/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite6205355468127584924.bed/.part-00000.crc /tmp/adamTestMvnQOhk7M0/TempSuite6205355468127584924.bed/part-00000 /tmp/adamTestMvnQOhk7M0/TempSuite6205355468127584924.bed/_SUCCESS /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite4318033632945387968 /tmp/adamTestMvnQOhk7M0/TempSuite4369432083829045835 /tmp/adamTestMvnQOhk7M0/TempSuite3945399308947456932.adam /tmp/adamTestMvnQOhk7M0/TempSuite3945399308947456932.adam/.part-00000-01be09ba-6796-4dbf-9158-8ce1cef8ed5c-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite3945399308947456932.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite3945399308947456932.adam/part-00002-01be09ba-6796-4dbf-9158-8ce1cef8ed5c-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite3945399308947456932.adam/part-00000-01be09ba-6796-4dbf-9158-8ce1cef8ed5c-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite3945399308947456932.adam/.part-00001-01be09ba-6796-4dbf-9158-8ce1cef8ed5c-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite3945399308947456932.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite3945399308947456932.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite3945399308947456932.adam/.part-00002-01be09ba-6796-4dbf-9158-8ce1cef8ed5c-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite3945399308947456932.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite3945399308947456932.adam/part-00001-01be09ba-6796-4dbf-9158-8ce1cef8ed5c-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite1420998040780882021.bed /tmp/adamTestMvnQOhk7M0/TempSuite1420998040780882021.bed/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite1420998040780882021.bed/.part-00000.crc /tmp/adamTestMvnQOhk7M0/TempSuite1420998040780882021.bed/part-00000 /tmp/adamTestMvnQOhk7M0/TempSuite1420998040780882021.bed/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite6972701458166534539 /tmp/adamTestMvnQOhk7M0/TempSuite128196524110297304 /tmp/adamTestMvnQOhk7M0/TempSuite1787950340309225838.adam /tmp/adamTestMvnQOhk7M0/TempSuite1787950340309225838.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite1787950340309225838.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite1787950340309225838.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite1787950340309225838.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite1787950340309225838.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite1787950340309225838.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite1787950340309225838.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite1787950340309225838.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite1787950340309225838.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite1787950340309225838.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite1787950340309225838.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite1787950340309225838.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/TempSuite1787950340309225838.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/TempSuite1787950340309225838.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite7357018281036670502 /tmp/adamTestMvnQOhk7M0/TempSuite1948188965748285881.adam /tmp/adamTestMvnQOhk7M0/TempSuite1948188965748285881.adam/.part-00005-9048f633-727b-4ea7-a3f6-636108fe12d3-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite1948188965748285881.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite1948188965748285881.adam/part-00003-9048f633-727b-4ea7-a3f6-636108fe12d3-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite1948188965748285881.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite1948188965748285881.adam/part-00000-9048f633-727b-4ea7-a3f6-636108fe12d3-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite1948188965748285881.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite1948188965748285881.adam/.part-00000-9048f633-727b-4ea7-a3f6-636108fe12d3-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite1948188965748285881.adam/.part-00003-9048f633-727b-4ea7-a3f6-636108fe12d3-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite1948188965748285881.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/TempSuite1948188965748285881.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite1948188965748285881.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite1948188965748285881.adam/part-00005-9048f633-727b-4ea7-a3f6-636108fe12d3-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite2179614830801599769 /tmp/adamTestMvnQOhk7M0/.TempSuite1896937696097933428.bam.crc /tmp/adamTestMvnQOhk7M0/TempSuite9065339108612320860.bam /tmp/adamTestMvnQOhk7M0/TempSuite8440235267256742960.bed /tmp/adamTestMvnQOhk7M0/TempSuite8440235267256742960.bed/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite8440235267256742960.bed/.part-00000.crc /tmp/adamTestMvnQOhk7M0/TempSuite8440235267256742960.bed/part-00000 /tmp/adamTestMvnQOhk7M0/TempSuite8440235267256742960.bed/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite6773190068945032925 /tmp/adamTestMvnQOhk7M0/TempSuite3085059769089572730.adam /tmp/adamTestMvnQOhk7M0/TempSuite3085059769089572730.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite3085059769089572730.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite3085059769089572730.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite3085059769089572730.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite3085059769089572730.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite3085059769089572730.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite3085059769089572730.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite3085059769089572730.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite3085059769089572730.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite3085059769089572730.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite3085059769089572730.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite3085059769089572730.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/TempSuite3085059769089572730.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/TempSuite3085059769089572730.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite2564001659488573835 /tmp/adamTestMvnQOhk7M0/TempSuite5026348888428886828.adam /tmp/adamTestMvnQOhk7M0/TempSuite5026348888428886828.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite5026348888428886828.adam/part-r-00001.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite5026348888428886828.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite5026348888428886828.adam/part-r-00002.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite5026348888428886828.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite5026348888428886828.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite5026348888428886828.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite5026348888428886828.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite5026348888428886828.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite5026348888428886828.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite5026348888428886828.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite5026348888428886828.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite5026348888428886828.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite5026348888428886828.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite5026348888428886828.adam/part-r-00003.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite5026348888428886828.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite7442351167336016322.adam /tmp/adamTestMvnQOhk7M0/TempSuite7442351167336016322.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite7442351167336016322.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite7442351167336016322.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite7442351167336016322.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite7442351167336016322.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite7442351167336016322.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite7442351167336016322.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite7442351167336016322.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite7442351167336016322.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite7442351167336016322.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite7442351167336016322.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite7442351167336016322.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/TempSuite7442351167336016322.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/TempSuite7442351167336016322.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite4051357291885849757 /tmp/adamTestMvnQOhk7M0/TempSuite3017990681752298371.sam /tmp/adamTestMvnQOhk7M0/TempSuite6560597399589935739 /tmp/adamTestMvnQOhk7M0/TempSuite3277477198596499543 /tmp/adamTestMvnQOhk7M0/744572417224027852 /tmp/adamTestMvnQOhk7M0/744572417224027852/sorted.vcf /tmp/adamTestMvnQOhk7M0/744572417224027852/.sorted.vcf.crc /tmp/adamTestMvnQOhk7M0/TempSuite9045552604628360218 /tmp/adamTestMvnQOhk7M0/TempSuite7007350453736446272.adam /tmp/adamTestMvnQOhk7M0/TempSuite7007350453736446272.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite7007350453736446272.adam/part-r-00001.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite7007350453736446272.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite7007350453736446272.adam/part-r-00002.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite7007350453736446272.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite7007350453736446272.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite7007350453736446272.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite7007350453736446272.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite7007350453736446272.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite7007350453736446272.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite7007350453736446272.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite7007350453736446272.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite7007350453736446272.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite7007350453736446272.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite7007350453736446272.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite7007350453736446272.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite7007350453736446272.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/TempSuite7007350453736446272.adam/part-r-00003.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite7007350453736446272.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/TempSuite7007350453736446272.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite5316005554648479138.adam /tmp/adamTestMvnQOhk7M0/TempSuite5316005554648479138.adam/part-00000-3afe17ff-6b31-4e26-b736-da4344955069-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite5316005554648479138.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite5316005554648479138.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite5316005554648479138.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite5316005554648479138.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite5316005554648479138.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite5316005554648479138.adam/.part-00000-3afe17ff-6b31-4e26-b736-da4344955069-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite5316005554648479138.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite5316005554648479138.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/TempSuite5316005554648479138.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/TempSuite3043520080757391651 /tmp/adamTestMvnQOhk7M0/TempSuite8208159205693642702 /tmp/adamTestMvnQOhk7M0/TempSuite6574876014558882303.adam /tmp/adamTestMvnQOhk7M0/TempSuite6574876014558882303.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite6574876014558882303.adam/part-r-00001.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite6574876014558882303.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite6574876014558882303.adam/part-r-00002.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite6574876014558882303.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite6574876014558882303.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite6574876014558882303.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite6574876014558882303.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite6574876014558882303.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite6574876014558882303.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite6574876014558882303.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite6574876014558882303.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite6574876014558882303.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/TempSuite6574876014558882303.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite6574876014558882303.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite6574876014558882303.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite6574876014558882303.adam/part-r-00003.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite6574876014558882303.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite1506694535171149799.adam /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite1506694535171149799.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite1506694535171149799.adam/part-r-00001.gz.parquet /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite1506694535171149799.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite1506694535171149799.adam/part-r-00002.gz.parquet /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite1506694535171149799.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite1506694535171149799.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite1506694535171149799.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite1506694535171149799.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite1506694535171149799.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite1506694535171149799.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite1506694535171149799.adam/_metadata /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite1506694535171149799.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite1506694535171149799.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite1506694535171149799.adam/_references.avro /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite1506694535171149799.adam/part-r-00003.gz.parquet /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite1506694535171149799.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite9177580764705072082.bed /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite9177580764705072082.bed/.part-00001.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite9177580764705072082.bed/.part-00003.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite9177580764705072082.bed/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite9177580764705072082.bed/part-00003 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite9177580764705072082.bed/.part-00000.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite9177580764705072082.bed/part-00000 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite9177580764705072082.bed/part-00002 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite9177580764705072082.bed/_SUCCESS /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite9177580764705072082.bed/part-00001 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite9177580764705072082.bed/.part-00002.crc /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite8554669669036311430.adam /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite8554669669036311430.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite8554669669036311430.adam/part-r-00001.gz.parquet /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite8554669669036311430.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite8554669669036311430.adam/part-r-00002.gz.parquet /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite8554669669036311430.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite8554669669036311430.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite8554669669036311430.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite8554669669036311430.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite8554669669036311430.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite8554669669036311430.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite8554669669036311430.adam/_metadata /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite8554669669036311430.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite8554669669036311430.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite8554669669036311430.adam/_references.avro /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite8554669669036311430.adam/part-r-00003.gz.parquet /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite8554669669036311430.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite8623672424989740141 /tmp/adamTestMvnQOhk7M0/TempSuite8113489797281781813.sam /tmp/adamTestMvnQOhk7M0/TempSuite3447929683557097194 /tmp/adamTestMvnQOhk7M0/TempSuite5714544587244007874.fa /tmp/adamTestMvnQOhk7M0/TempSuite5714544587244007874.fa/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite5714544587244007874.fa/.part-00000.crc /tmp/adamTestMvnQOhk7M0/TempSuite5714544587244007874.fa/part-00000 /tmp/adamTestMvnQOhk7M0/TempSuite5714544587244007874.fa/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite1439733097889170232.adam /tmp/adamTestMvnQOhk7M0/TempSuite1439733097889170232.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite1439733097889170232.adam/part-r-00001.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite1439733097889170232.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite1439733097889170232.adam/part-r-00002.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite1439733097889170232.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite1439733097889170232.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite1439733097889170232.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite1439733097889170232.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite1439733097889170232.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite1439733097889170232.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite1439733097889170232.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite1439733097889170232.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite1439733097889170232.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite1439733097889170232.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite1439733097889170232.adam/part-r-00003.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite1439733097889170232.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/7818245750368100014 /tmp/adamTestMvnQOhk7M0/7818245750368100014/unordered.sam /tmp/adamTestMvnQOhk7M0/7818245750368100014/.unordered.sam.crc /tmp/adamTestMvnQOhk7M0/TempSuite2683299898081122327 /tmp/adamTestMvnQOhk7M0/TempSuite6913278763024290780 /tmp/adamTestMvnQOhk7M0/TempSuite537475456734941035.adam /tmp/adamTestMvnQOhk7M0/TempSuite537475456734941035.adam/part-00000-390902ec-3dde-4536-a1b8-241287331c56-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite537475456734941035.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite537475456734941035.adam/.part-00000-390902ec-3dde-4536-a1b8-241287331c56-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite537475456734941035.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite537475456734941035.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite537475456734941035.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite537475456734941035.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite537475456734941035.adam/_header /tmp/adamTestMvnQOhk7M0/2741994004534033515 /tmp/adamTestMvnQOhk7M0/2741994004534033515/.ordered.sam.crc /tmp/adamTestMvnQOhk7M0/2741994004534033515/ordered.sam /tmp/adamTestMvnQOhk7M0/TempSuite6742862710711574918 /tmp/adamTestMvnQOhk7M0/TempSuite3429610231863741938 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7347319125479454944.interval_list /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7347319125479454944.interval_list/.part-00001.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7347319125479454944.interval_list/.part-00003.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7347319125479454944.interval_list/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7347319125479454944.interval_list/part-00003 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7347319125479454944.interval_list/.part-00000.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7347319125479454944.interval_list/part-00000 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7347319125479454944.interval_list/part-00002 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7347319125479454944.interval_list/_SUCCESS /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7347319125479454944.interval_list/part-00001 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7347319125479454944.interval_list/.part-00002.crc /tmp/adamTestMvnQOhk7M0/8398222516280805155 /tmp/adamTestMvnQOhk7M0/8398222516280805155/.artificial.cram.crc /tmp/adamTestMvnQOhk7M0/8398222516280805155/artificial.cram /tmp/adamTestMvnQOhk7M0/TempSuite587892602033778704 /tmp/adamTestMvnQOhk7M0/TempSuite1231067844977260349 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6760080509365259499.narrowPeak /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6760080509365259499.narrowPeak/.part-00001.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6760080509365259499.narrowPeak/.part-00003.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6760080509365259499.narrowPeak/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6760080509365259499.narrowPeak/part-00003 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6760080509365259499.narrowPeak/.part-00000.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6760080509365259499.narrowPeak/part-00000 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6760080509365259499.narrowPeak/part-00002 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6760080509365259499.narrowPeak/_SUCCESS /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6760080509365259499.narrowPeak/part-00001 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6760080509365259499.narrowPeak/.part-00002.crc /tmp/adamTestMvnQOhk7M0/TempSuite2542037625873056763 /tmp/adamTestMvnQOhk7M0/TempSuite896210047620218867 /tmp/adamTestMvnQOhk7M0/TempSuite7763850016927620066_1.fq /tmp/adamTestMvnQOhk7M0/TempSuite7763850016927620066_1.fq/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite7763850016927620066_1.fq/.part-00000.crc /tmp/adamTestMvnQOhk7M0/TempSuite7763850016927620066_1.fq/part-00000 /tmp/adamTestMvnQOhk7M0/TempSuite7763850016927620066_1.fq/_SUCCESS /tmp/adamTestMvnQOhk7M0/unsorted.sam8453239198793738012.sam /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite4707042545925118779 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6938307137327292132.interval_list /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6938307137327292132.interval_list/.part-00001.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6938307137327292132.interval_list/.part-00003.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6938307137327292132.interval_list/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6938307137327292132.interval_list/part-00003 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6938307137327292132.interval_list/.part-00000.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6938307137327292132.interval_list/part-00000 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6938307137327292132.interval_list/part-00002 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6938307137327292132.interval_list/_SUCCESS /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6938307137327292132.interval_list/part-00001 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6938307137327292132.interval_list/.part-00002.crc /tmp/adamTestMvnQOhk7M0/TempSuite854951212020829368.adam /tmp/adamTestMvnQOhk7M0/TempSuite854951212020829368.adam/part-00000-e020b960-7e10-46d9-a9b5-c30bfce44cb1-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite854951212020829368.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite854951212020829368.adam/.part-00000-e020b960-7e10-46d9-a9b5-c30bfce44cb1-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite854951212020829368.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite854951212020829368.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite854951212020829368.adam/_references.avro /tmp/adamTestMvnQOhk7M0/6367289300002687024 /tmp/adamTestMvnQOhk7M0/6367289300002687024/unordered.adam /tmp/adamTestMvnQOhk7M0/6367289300002687024/unordered.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/6367289300002687024/unordered.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/6367289300002687024/unordered.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/6367289300002687024/unordered.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/6367289300002687024/unordered.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/6367289300002687024/unordered.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/6367289300002687024/unordered.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/6367289300002687024/unordered.adam/_metadata /tmp/adamTestMvnQOhk7M0/6367289300002687024/unordered.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/6367289300002687024/unordered.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/6367289300002687024/unordered.adam/_references.avro /tmp/adamTestMvnQOhk7M0/6367289300002687024/unordered.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/6367289300002687024/unordered.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/6367289300002687024/unordered.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite1375788801999831908.bam /tmp/adamTestMvnQOhk7M0/TempSuite1375788801999831908.bam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite1375788801999831908.bam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite1375788801999831908.bam/.part-r-00000.bam.crc /tmp/adamTestMvnQOhk7M0/TempSuite1375788801999831908.bam/part-r-00000.bam /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite8082811900885850324.narrowPeak /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite8082811900885850324.narrowPeak/.part-00001.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite8082811900885850324.narrowPeak/.part-00003.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite8082811900885850324.narrowPeak/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite8082811900885850324.narrowPeak/part-00003 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite8082811900885850324.narrowPeak/.part-00000.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite8082811900885850324.narrowPeak/part-00000 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite8082811900885850324.narrowPeak/part-00002 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite8082811900885850324.narrowPeak/_SUCCESS /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite8082811900885850324.narrowPeak/part-00001 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite8082811900885850324.narrowPeak/.part-00002.crc /tmp/adamTestMvnQOhk7M0/5933583999323437108 /tmp/adamTestMvnQOhk7M0/5933583999323437108/.ordered.sam.crc /tmp/adamTestMvnQOhk7M0/5933583999323437108/ordered.sam /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite1884388006411969275.interval_list /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite1884388006411969275.interval_list/.part-00001.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite1884388006411969275.interval_list/.part-00003.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite1884388006411969275.interval_list/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite1884388006411969275.interval_list/part-00003 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite1884388006411969275.interval_list/.part-00000.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite1884388006411969275.interval_list/part-00000 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite1884388006411969275.interval_list/part-00002 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite1884388006411969275.interval_list/_SUCCESS /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite1884388006411969275.interval_list/part-00001 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite1884388006411969275.interval_list/.part-00002.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6458181240436084652.bed /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6458181240436084652.bed/.part-00001.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6458181240436084652.bed/.part-00003.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6458181240436084652.bed/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6458181240436084652.bed/part-00003 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6458181240436084652.bed/.part-00000.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6458181240436084652.bed/part-00000 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6458181240436084652.bed/part-00002 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6458181240436084652.bed/_SUCCESS /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6458181240436084652.bed/part-00001 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6458181240436084652.bed/.part-00002.crc /tmp/adamTestMvnQOhk7M0/TempSuite7343004181977026975 /tmp/adamTestMvnQOhk7M0/TempSuite2174091282625377585.adam /tmp/adamTestMvnQOhk7M0/TempSuite2174091282625377585.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite2174091282625377585.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite2174091282625377585.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite2174091282625377585.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite2174091282625377585.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite2174091282625377585.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite2174091282625377585.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite2174091282625377585.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite2174091282625377585.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite2174091282625377585.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite2174091282625377585.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite2174091282625377585.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/TempSuite2174091282625377585.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/TempSuite2174091282625377585.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/5239590225881796096 /tmp/adamTestMvnQOhk7M0/5239590225881796096/artificial.cram /tmp/adamTestMvnQOhk7M0/5239590225881796096/artificial.cram/part-r-00000.cram /tmp/adamTestMvnQOhk7M0/5239590225881796096/artificial.cram/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/5239590225881796096/artificial.cram/_SUCCESS /tmp/adamTestMvnQOhk7M0/5239590225881796096/artificial.cram/.part-r-00000.cram.crc /tmp/adamTestMvnQOhk7M0/TempSuite275644460954285924 /tmp/adamTestMvnQOhk7M0/913973752894421124 /tmp/adamTestMvnQOhk7M0/913973752894421124/.gff3 /tmp/adamTestMvnQOhk7M0/913973752894421124/..gff3.crc /tmp/adamTestMvnQOhk7M0/TempSuite4501627269157522769.adam /tmp/adamTestMvnQOhk7M0/TempSuite4501627269157522769.adam/part-00002-68d09346-6815-4370-8394-33d61b4586dc-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite4501627269157522769.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite4501627269157522769.adam/part-00001-68d09346-6815-4370-8394-33d61b4586dc-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite4501627269157522769.adam/.part-00002-68d09346-6815-4370-8394-33d61b4586dc-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite4501627269157522769.adam/part-00000-68d09346-6815-4370-8394-33d61b4586dc-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite4501627269157522769.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite4501627269157522769.adam/.part-00000-68d09346-6815-4370-8394-33d61b4586dc-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite4501627269157522769.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite4501627269157522769.adam/.part-00001-68d09346-6815-4370-8394-33d61b4586dc-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite4501627269157522769.adam/_references.avro /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite5670480282848100275 /tmp/adamTestMvnQOhk7M0/TempSuite1067084497906584929.adam /tmp/adamTestMvnQOhk7M0/TempSuite1067084497906584929.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite1067084497906584929.adam/._partitionedByStartPos.crc /tmp/adamTestMvnQOhk7M0/TempSuite1067084497906584929.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite1067084497906584929.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite1067084497906584929.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/TempSuite1067084497906584929.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite1067084497906584929.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite1067084497906584929.adam/referenceName=1 /tmp/adamTestMvnQOhk7M0/TempSuite1067084497906584929.adam/referenceName=1/positionBin=14 /tmp/adamTestMvnQOhk7M0/TempSuite1067084497906584929.adam/referenceName=1/positionBin=14/.part-00000-29aac4bd-1809-4ed8-af9d-10dbe2f2f1fc.c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite1067084497906584929.adam/referenceName=1/positionBin=14/part-00000-29aac4bd-1809-4ed8-af9d-10dbe2f2f1fc.c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite1067084497906584929.adam/referenceName=1/positionBin=169 /tmp/adamTestMvnQOhk7M0/TempSuite1067084497906584929.adam/referenceName=1/positionBin=169/.part-00001-29aac4bd-1809-4ed8-af9d-10dbe2f2f1fc.c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite1067084497906584929.adam/referenceName=1/positionBin=169/part-00001-29aac4bd-1809-4ed8-af9d-10dbe2f2f1fc.c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite1067084497906584929.adam/referenceName=1/positionBin=240 /tmp/adamTestMvnQOhk7M0/TempSuite1067084497906584929.adam/referenceName=1/positionBin=240/.part-00002-29aac4bd-1809-4ed8-af9d-10dbe2f2f1fc.c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite1067084497906584929.adam/referenceName=1/positionBin=240/part-00002-29aac4bd-1809-4ed8-af9d-10dbe2f2f1fc.c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite1067084497906584929.adam/referenceName=1/positionBin=0 /tmp/adamTestMvnQOhk7M0/TempSuite1067084497906584929.adam/referenceName=1/positionBin=0/.part-00000-29aac4bd-1809-4ed8-af9d-10dbe2f2f1fc.c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite1067084497906584929.adam/referenceName=1/positionBin=0/part-00000-29aac4bd-1809-4ed8-af9d-10dbe2f2f1fc.c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite1067084497906584929.adam/_partitionedByStartPos /tmp/adamTestMvnQOhk7M0/TempSuite5583795560644497694.adam /tmp/adamTestMvnQOhk7M0/TempSuite5583795560644497694.adam/part-00000-129fe433-4b15-499b-b8cb-e1c8af7c0572-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite5583795560644497694.adam/.part-00000-129fe433-4b15-499b-b8cb-e1c8af7c0572-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite5583795560644497694.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite5583795560644497694.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite5583795560644497694.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite5583795560644497694.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite5583795560644497694.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite5583795560644497694.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite5583795560644497694.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/TempSuite5583795560644497694.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite786856176012807642 /tmp/adamTestMvnQOhk7M0/TempSuite1240578689554351171 /tmp/adamTestMvnQOhk7M0/TempSuite6512300623263688118 /tmp/adamTestMvnQOhk7M0/javaAC7554882482490699780 /tmp/adamTestMvnQOhk7M0/javaAC7554882482490699780/testRdd.fragment.adam /tmp/adamTestMvnQOhk7M0/javaAC7554882482490699780/testRdd.fragment.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/javaAC7554882482490699780/testRdd.fragment.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/javaAC7554882482490699780/testRdd.fragment.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/javaAC7554882482490699780/testRdd.fragment.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/javaAC7554882482490699780/testRdd.fragment.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/javaAC7554882482490699780/testRdd.fragment.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/javaAC7554882482490699780/testRdd.fragment.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/javaAC7554882482490699780/testRdd.fragment.adam/_metadata /tmp/adamTestMvnQOhk7M0/javaAC7554882482490699780/testRdd.fragment.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/javaAC7554882482490699780/testRdd.fragment.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/javaAC7554882482490699780/testRdd.fragment.adam/_references.avro /tmp/adamTestMvnQOhk7M0/javaAC7554882482490699780/testRdd.fragment.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/javaAC7554882482490699780/testRdd.fragment.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/javaAC7554882482490699780/testRdd.fragment.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite1205001865971210275.adam /tmp/adamTestMvnQOhk7M0/TempSuite1205001865971210275.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite1205001865971210275.adam/.part-00000-52cfeb10-6eff-4ddf-9271-ecf8394d7bb6-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite1205001865971210275.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite1205001865971210275.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite1205001865971210275.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite1205001865971210275.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/TempSuite1205001865971210275.adam/part-00000-52cfeb10-6eff-4ddf-9271-ecf8394d7bb6-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite1205001865971210275.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite1205001865971210275.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite1205001865971210275.adam/_header /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6730472695720948748 /tmp/adamTestMvnQOhk7M0/TempSuite6321281584204778283.adam /tmp/adamTestMvnQOhk7M0/TempSuite6321281584204778283.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite6321281584204778283.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite6321281584204778283.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite6321281584204778283.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite6321281584204778283.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite6321281584204778283.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite6321281584204778283.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite6321281584204778283.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/TempSuite6321281584204778283.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite6321281584204778283.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite6321281584204778283.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite6321281584204778283.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite7328254965779204469.adam /tmp/adamTestMvnQOhk7M0/TempSuite7328254965779204469.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite7328254965779204469.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite7328254965779204469.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite7328254965779204469.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite7328254965779204469.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite7328254965779204469.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite7328254965779204469.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite7328254965779204469.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite7328254965779204469.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite7328254965779204469.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite2157334334782860530_2.fq /tmp/adamTestMvnQOhk7M0/TempSuite2459141406042355714 /tmp/adamTestMvnQOhk7M0/javaAC4682932625312233673 /tmp/adamTestMvnQOhk7M0/javaAC4682932625312233673/testRdd.fragment.adam /tmp/adamTestMvnQOhk7M0/javaAC4682932625312233673/testRdd.fragment.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/javaAC4682932625312233673/testRdd.fragment.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/javaAC4682932625312233673/testRdd.fragment.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/javaAC4682932625312233673/testRdd.fragment.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/javaAC4682932625312233673/testRdd.fragment.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/javaAC4682932625312233673/testRdd.fragment.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/javaAC4682932625312233673/testRdd.fragment.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/javaAC4682932625312233673/testRdd.fragment.adam/_metadata /tmp/adamTestMvnQOhk7M0/javaAC4682932625312233673/testRdd.fragment.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/javaAC4682932625312233673/testRdd.fragment.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/javaAC4682932625312233673/testRdd.fragment.adam/_references.avro /tmp/adamTestMvnQOhk7M0/javaAC4682932625312233673/testRdd.fragment.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/javaAC4682932625312233673/testRdd.fragment.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/javaAC4682932625312233673/testRdd.fragment.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite8658305197354592292.adam /tmp/adamTestMvnQOhk7M0/TempSuite8658305197354592292.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite8658305197354592292.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite8658305197354592292.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite8658305197354592292.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite8658305197354592292.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite8658305197354592292.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite8658305197354592292.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite8658305197354592292.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite8658305197354592292.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite8658305197354592292.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite8658305197354592292.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite8658305197354592292.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/TempSuite8658305197354592292.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/TempSuite8658305197354592292.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite7965390347362435888.adam /tmp/adamTestMvnQOhk7M0/TempSuite7965390347362435888.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite7965390347362435888.adam/part-r-00001.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite7965390347362435888.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite7965390347362435888.adam/part-r-00002.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite7965390347362435888.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite7965390347362435888.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite7965390347362435888.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite7965390347362435888.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite7965390347362435888.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite7965390347362435888.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite7965390347362435888.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite7965390347362435888.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite7965390347362435888.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/TempSuite7965390347362435888.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite7965390347362435888.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite7965390347362435888.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite7965390347362435888.adam/part-r-00003.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite7965390347362435888.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite128196524110297304.adam /tmp/adamTestMvnQOhk7M0/TempSuite128196524110297304.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite128196524110297304.adam/part-r-00001.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite128196524110297304.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite128196524110297304.adam/part-r-00002.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite128196524110297304.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite128196524110297304.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite128196524110297304.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite128196524110297304.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite128196524110297304.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite128196524110297304.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite128196524110297304.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite128196524110297304.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite128196524110297304.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite128196524110297304.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite128196524110297304.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite128196524110297304.adam/part-r-00003.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite128196524110297304.adam/_header /tmp/adamTestMvnQOhk7M0/TempSuite128196524110297304.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/4301209620002650351 /tmp/adamTestMvnQOhk7M0/4301209620002650351/.small.vcf.bgz.crc /tmp/adamTestMvnQOhk7M0/4301209620002650351/small.vcf.bgz /tmp/adamTestMvnQOhk7M0/TempSuite1005375794098428537.bed /tmp/adamTestMvnQOhk7M0/TempSuite1005375794098428537.bed/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite1005375794098428537.bed/.part-00000.crc /tmp/adamTestMvnQOhk7M0/TempSuite1005375794098428537.bed/part-00000 /tmp/adamTestMvnQOhk7M0/TempSuite1005375794098428537.bed/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite2119437735115846801 /tmp/adamTestMvnQOhk7M0/TempSuite6070657965704801350.adam /tmp/adamTestMvnQOhk7M0/TempSuite6070657965704801350.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite6070657965704801350.adam/._partitionedByStartPos.crc /tmp/adamTestMvnQOhk7M0/TempSuite6070657965704801350.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite6070657965704801350.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite6070657965704801350.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite6070657965704801350.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/TempSuite6070657965704801350.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite6070657965704801350.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite6070657965704801350.adam/referenceName=1 /tmp/adamTestMvnQOhk7M0/TempSuite6070657965704801350.adam/referenceName=1/positionBin=0 /tmp/adamTestMvnQOhk7M0/TempSuite6070657965704801350.adam/referenceName=1/positionBin=0/.part-00000-a659247b-2b3c-4965-ab94-79ca00453d4f.c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite6070657965704801350.adam/referenceName=1/positionBin=0/part-00000-a659247b-2b3c-4965-ab94-79ca00453d4f.c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite6070657965704801350.adam/_header /tmp/adamTestMvnQOhk7M0/TempSuite6070657965704801350.adam/_partitionedByStartPos /tmp/adamTestMvnQOhk7M0/TempSuite920895736180087457.bed /tmp/adamTestMvnQOhk7M0/TempSuite920895736180087457.bed/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite920895736180087457.bed/.part-00000.crc /tmp/adamTestMvnQOhk7M0/TempSuite920895736180087457.bed/part-00000 /tmp/adamTestMvnQOhk7M0/TempSuite920895736180087457.bed/_SUCCESS /tmp/adamTestMvnQOhk7M0/1568827120600-0 /tmp/adamTestMvnQOhk7M0/1568827120600-0/.test.gvcf.vcf.crc /tmp/adamTestMvnQOhk7M0/1568827120600-0/test.gvcf.vcf /tmp/adamTestMvnQOhk7M0/TempSuite7336651986192582281_2.fq /tmp/adamTestMvnQOhk7M0/TempSuite7336651986192582281_2.fq/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite7336651986192582281_2.fq/.part-00000.crc /tmp/adamTestMvnQOhk7M0/TempSuite7336651986192582281_2.fq/part-00000 /tmp/adamTestMvnQOhk7M0/TempSuite7336651986192582281_2.fq/_SUCCESS /tmp/adamTestMvnQOhk7M0/1097055964985812928 /tmp/adamTestMvnQOhk7M0/1097055964985812928/unordered.sam /tmp/adamTestMvnQOhk7M0/1097055964985812928/.unordered.sam.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite1465695543337133181.gff3 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite1465695543337133181.gff3/.part-00001.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite1465695543337133181.gff3/.part-00003.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite1465695543337133181.gff3/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite1465695543337133181.gff3/part-00003 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite1465695543337133181.gff3/.part-00000.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite1465695543337133181.gff3/part-00000 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite1465695543337133181.gff3/part-00002 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite1465695543337133181.gff3/_SUCCESS /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite1465695543337133181.gff3/part-00001 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite1465695543337133181.gff3/.part-00002.crc /tmp/adamTestMvnQOhk7M0/TempSuite517077388172118812 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7033780475686139559.interval_list /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7033780475686139559.interval_list/.part-00001.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7033780475686139559.interval_list/.part-00003.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7033780475686139559.interval_list/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7033780475686139559.interval_list/part-00003 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7033780475686139559.interval_list/.part-00000.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7033780475686139559.interval_list/part-00000 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7033780475686139559.interval_list/part-00002 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7033780475686139559.interval_list/_SUCCESS /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7033780475686139559.interval_list/part-00001 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7033780475686139559.interval_list/.part-00002.crc /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite7700585442252634755 /tmp/adamTestMvnQOhk7M0/TempSuite1604523201601465394 /tmp/adamTestMvnQOhk7M0/TempSuite3815572572247673839 /tmp/adamTestMvnQOhk7M0/random.vcf6922431472541893117.vcf /tmp/adamTestMvnQOhk7M0/TempSuite7128221550275790346 /tmp/adamTestMvnQOhk7M0/unordered.sam1443948004449673372.sam /tmp/adamTestMvnQOhk7M0/TempSuite2068502231335164526.adam /tmp/adamTestMvnQOhk7M0/TempSuite2068502231335164526.adam/.part-00000-a75572a9-0ace-4acf-8b5f-164c5d5fa47d-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite2068502231335164526.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite2068502231335164526.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite2068502231335164526.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite2068502231335164526.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite2068502231335164526.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/TempSuite2068502231335164526.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite2068502231335164526.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite2068502231335164526.adam/_header /tmp/adamTestMvnQOhk7M0/TempSuite2068502231335164526.adam/part-00000-a75572a9-0ace-4acf-8b5f-164c5d5fa47d-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite4631691071711281128 /tmp/adamTestMvnQOhk7M0/TempSuite8261087836800616950.adam /tmp/adamTestMvnQOhk7M0/TempSuite8261087836800616950.adam/referenceName=13 /tmp/adamTestMvnQOhk7M0/TempSuite8261087836800616950.adam/referenceName=13/positionBin=0 /tmp/adamTestMvnQOhk7M0/TempSuite8261087836800616950.adam/referenceName=13/positionBin=0/.part-00000-48e1951d-a802-4691-a4c0-408f80967a0b.c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite8261087836800616950.adam/referenceName=13/positionBin=0/part-00000-48e1951d-a802-4691-a4c0-408f80967a0b.c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite8261087836800616950.adam/referenceName=2 /tmp/adamTestMvnQOhk7M0/TempSuite8261087836800616950.adam/referenceName=2/positionBin=0 /tmp/adamTestMvnQOhk7M0/TempSuite8261087836800616950.adam/referenceName=2/positionBin=0/.part-00000-48e1951d-a802-4691-a4c0-408f80967a0b.c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite8261087836800616950.adam/referenceName=2/positionBin=0/part-00000-48e1951d-a802-4691-a4c0-408f80967a0b.c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite8261087836800616950.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite8261087836800616950.adam/._partitionedByStartPos.crc /tmp/adamTestMvnQOhk7M0/TempSuite8261087836800616950.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite8261087836800616950.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite8261087836800616950.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite8261087836800616950.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite8261087836800616950.adam/referenceName=1 /tmp/adamTestMvnQOhk7M0/TempSuite8261087836800616950.adam/referenceName=1/positionBin=0 /tmp/adamTestMvnQOhk7M0/TempSuite8261087836800616950.adam/referenceName=1/positionBin=0/.part-00000-48e1951d-a802-4691-a4c0-408f80967a0b.c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite8261087836800616950.adam/referenceName=1/positionBin=0/part-00000-48e1951d-a802-4691-a4c0-408f80967a0b.c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite8261087836800616950.adam/_header /tmp/adamTestMvnQOhk7M0/TempSuite8261087836800616950.adam/_partitionedByStartPos /tmp/adamTestMvnQOhk7M0/TempSuite8113489797281781813 /tmp/adamTestMvnQOhk7M0/ordered.sam6171993558942233047.sam /tmp/adamTestMvnQOhk7M0/TempSuite2509939659144180793.adam /tmp/adamTestMvnQOhk7M0/TempSuite2509939659144180793.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite2509939659144180793.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite2509939659144180793.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite2509939659144180793.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite2509939659144180793.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite2509939659144180793.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite2509939659144180793.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite2509939659144180793.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite2509939659144180793.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite2509939659144180793.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite2509939659144180793.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite2509939659144180793.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/TempSuite2509939659144180793.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/TempSuite2509939659144180793.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite1511544356175882234_2.fq /tmp/adamTestMvnQOhk7M0/TempSuite1067084497906584929 /tmp/adamTestMvnQOhk7M0/TempSuite7048827787882179970 /tmp/adamTestMvnQOhk7M0/.TempSuite4365002051793687013.fq.crc /tmp/adamTestMvnQOhk7M0/TempSuite5169682830458679615 /tmp/adamTestMvnQOhk7M0/TempSuite1231067844977260349.adam /tmp/adamTestMvnQOhk7M0/TempSuite1231067844977260349.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite1231067844977260349.adam/._partitionedByStartPos.crc /tmp/adamTestMvnQOhk7M0/TempSuite1231067844977260349.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite1231067844977260349.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite1231067844977260349.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/TempSuite1231067844977260349.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite1231067844977260349.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite1231067844977260349.adam/referenceName=1 /tmp/adamTestMvnQOhk7M0/TempSuite1231067844977260349.adam/referenceName=1/positionBin=14 /tmp/adamTestMvnQOhk7M0/TempSuite1231067844977260349.adam/referenceName=1/positionBin=14/part-00000-7ce8a7c2-d52e-4c25-8807-f8fc89d048af.c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite1231067844977260349.adam/referenceName=1/positionBin=14/.part-00000-7ce8a7c2-d52e-4c25-8807-f8fc89d048af.c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite1231067844977260349.adam/referenceName=1/positionBin=169 /tmp/adamTestMvnQOhk7M0/TempSuite1231067844977260349.adam/referenceName=1/positionBin=169/part-00001-7ce8a7c2-d52e-4c25-8807-f8fc89d048af.c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite1231067844977260349.adam/referenceName=1/positionBin=169/.part-00001-7ce8a7c2-d52e-4c25-8807-f8fc89d048af.c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite1231067844977260349.adam/referenceName=1/positionBin=240 /tmp/adamTestMvnQOhk7M0/TempSuite1231067844977260349.adam/referenceName=1/positionBin=240/part-00002-7ce8a7c2-d52e-4c25-8807-f8fc89d048af.c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite1231067844977260349.adam/referenceName=1/positionBin=240/.part-00002-7ce8a7c2-d52e-4c25-8807-f8fc89d048af.c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite1231067844977260349.adam/referenceName=1/positionBin=0 /tmp/adamTestMvnQOhk7M0/TempSuite1231067844977260349.adam/referenceName=1/positionBin=0/part-00000-7ce8a7c2-d52e-4c25-8807-f8fc89d048af.c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite1231067844977260349.adam/referenceName=1/positionBin=0/.part-00000-7ce8a7c2-d52e-4c25-8807-f8fc89d048af.c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite1231067844977260349.adam/_partitionedByStartPos /tmp/adamTestMvnQOhk7M0/TempSuite5117506487428072254 /tmp/adamTestMvnQOhk7M0/TempSuite1823766473403056355.adam /tmp/adamTestMvnQOhk7M0/TempSuite1823766473403056355.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite1823766473403056355.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite1823766473403056355.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite1823766473403056355.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite1823766473403056355.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite1823766473403056355.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite1823766473403056355.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite1823766473403056355.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite1823766473403056355.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite1823766473403056355.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite1823766473403056355.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite1823766473403056355.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/TempSuite1823766473403056355.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/TempSuite1823766473403056355.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/random.vcf7051260367658486131.vcf /tmp/adamTestMvnQOhk7M0/adam-cli.TransformFeaturesSuite8360404304488527289.adam /tmp/adamTestMvnQOhk7M0/adam-cli.TransformFeaturesSuite8360404304488527289.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/adam-cli.TransformFeaturesSuite8360404304488527289.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/adam-cli.TransformFeaturesSuite8360404304488527289.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/adam-cli.TransformFeaturesSuite8360404304488527289.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/adam-cli.TransformFeaturesSuite8360404304488527289.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/adam-cli.TransformFeaturesSuite8360404304488527289.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/adam-cli.TransformFeaturesSuite8360404304488527289.adam/_metadata /tmp/adamTestMvnQOhk7M0/adam-cli.TransformFeaturesSuite8360404304488527289.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/adam-cli.TransformFeaturesSuite8360404304488527289.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/adam-cli.TransformFeaturesSuite8360404304488527289.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/adam-cli.TransformFeaturesSuite8360404304488527289.adam/_references.avro /tmp/adamTestMvnQOhk7M0/adam-cli.TransformFeaturesSuite8360404304488527289.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/unordered.sam3533364148844868158.sam /tmp/adamTestMvnQOhk7M0/TempSuite1769876729655942208.adam /tmp/adamTestMvnQOhk7M0/TempSuite1769876729655942208.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite1769876729655942208.adam/part-r-00001.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite1769876729655942208.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite1769876729655942208.adam/part-r-00002.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite1769876729655942208.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite1769876729655942208.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite1769876729655942208.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite1769876729655942208.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite1769876729655942208.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite1769876729655942208.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite1769876729655942208.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite1769876729655942208.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite1769876729655942208.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/TempSuite1769876729655942208.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite1769876729655942208.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite1769876729655942208.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite1769876729655942208.adam/part-r-00003.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite1769876729655942208.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite2509939659144180793 /tmp/adamTestMvnQOhk7M0/TempSuite4365002051793687013 /tmp/adamTestMvnQOhk7M0/TempSuite6540772395627270627 /tmp/adamTestMvnQOhk7M0/3609418835057704217 /tmp/adamTestMvnQOhk7M0/3609418835057704217/sorted-variants.vcf /tmp/adamTestMvnQOhk7M0/3609418835057704217/.sorted-variants.vcf.crc /tmp/adamTestMvnQOhk7M0/TempSuite2438952094527156590 /tmp/adamTestMvnQOhk7M0/TempSuite8708531771553439607.adam /tmp/adamTestMvnQOhk7M0/TempSuite8708531771553439607.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite8708531771553439607.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite8708531771553439607.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite8708531771553439607.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite8708531771553439607.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite8708531771553439607.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite8708531771553439607.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite8708531771553439607.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite8708531771553439607.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite8708531771553439607.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite8708531771553439607.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite8708531771553439607.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/TempSuite8708531771553439607.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/TempSuite8708531771553439607.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite1268888435421525669 /tmp/adamTestMvnQOhk7M0/TempSuite7973500997686862071.adam /tmp/adamTestMvnQOhk7M0/TempSuite7973500997686862071.adam/.part-00002-2cb12d2c-2390-4885-b39d-c7759dd33da2-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite7973500997686862071.adam/part-00002-2cb12d2c-2390-4885-b39d-c7759dd33da2-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite7973500997686862071.adam/.part-00000-2cb12d2c-2390-4885-b39d-c7759dd33da2-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite7973500997686862071.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite7973500997686862071.adam/.part-00001-2cb12d2c-2390-4885-b39d-c7759dd33da2-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite7973500997686862071.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite7973500997686862071.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite7973500997686862071.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite7973500997686862071.adam/part-00001-2cb12d2c-2390-4885-b39d-c7759dd33da2-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite7973500997686862071.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite7973500997686862071.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite7973500997686862071.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/TempSuite7973500997686862071.adam/part-00000-2cb12d2c-2390-4885-b39d-c7759dd33da2-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite7973500997686862071.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/TempSuite1366545508436506446.adam /tmp/adamTestMvnQOhk7M0/TempSuite1366545508436506446.adam/part-00001-8b9f3c74-2988-40da-8232-cf55f9ccd950-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite1366545508436506446.adam/.part-00001-8b9f3c74-2988-40da-8232-cf55f9ccd950-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite1366545508436506446.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite1366545508436506446.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite1366545508436506446.adam/part-00002-8b9f3c74-2988-40da-8232-cf55f9ccd950-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite1366545508436506446.adam/.part-00000-8b9f3c74-2988-40da-8232-cf55f9ccd950-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite1366545508436506446.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite1366545508436506446.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite1366545508436506446.adam/.part-00002-8b9f3c74-2988-40da-8232-cf55f9ccd950-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite1366545508436506446.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite1366545508436506446.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite1366545508436506446.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/TempSuite1366545508436506446.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/TempSuite1366545508436506446.adam/part-00000-8b9f3c74-2988-40da-8232-cf55f9ccd950-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite6359887027637572460 /tmp/adamTestMvnQOhk7M0/TempSuite3566492851210799693 /tmp/adamTestMvnQOhk7M0/2855492232800590848 /tmp/adamTestMvnQOhk7M0/2855492232800590848/unordered.sam /tmp/adamTestMvnQOhk7M0/2855492232800590848/.unordered.sam.crc /tmp/adamTestMvnQOhk7M0/adam-cli.TransformFeaturesSuite4141825366635691130.adam /tmp/adamTestMvnQOhk7M0/adam-cli.TransformFeaturesSuite4141825366635691130.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/adam-cli.TransformFeaturesSuite4141825366635691130.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/adam-cli.TransformFeaturesSuite4141825366635691130.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/adam-cli.TransformFeaturesSuite4141825366635691130.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/adam-cli.TransformFeaturesSuite4141825366635691130.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/adam-cli.TransformFeaturesSuite4141825366635691130.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/adam-cli.TransformFeaturesSuite4141825366635691130.adam/_metadata /tmp/adamTestMvnQOhk7M0/adam-cli.TransformFeaturesSuite4141825366635691130.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/adam-cli.TransformFeaturesSuite4141825366635691130.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/adam-cli.TransformFeaturesSuite4141825366635691130.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/adam-cli.TransformFeaturesSuite4141825366635691130.adam/_references.avro /tmp/adamTestMvnQOhk7M0/adam-cli.TransformFeaturesSuite4141825366635691130.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite4510409246755817053 /tmp/adamTestMvnQOhk7M0/TempSuite170844752421492035reads12.sam /tmp/adamTestMvnQOhk7M0/.TempSuite5455814344482665078.bam.crc /tmp/adamTestMvnQOhk7M0/TempSuite3630150137750968623 /tmp/adamTestMvnQOhk7M0/TempSuite4732575680820217066.sam /tmp/adamTestMvnQOhk7M0/TempSuite1517913456217346187.sam /tmp/adamTestMvnQOhk7M0/TempSuite1517913456217346187.sam/part-r-00000.sam /tmp/adamTestMvnQOhk7M0/TempSuite1517913456217346187.sam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite1517913456217346187.sam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite1517913456217346187.sam/.part-r-00000.sam.crc /tmp/adamTestMvnQOhk7M0/TempSuite3688836958654127545 /tmp/adamTestMvnQOhk7M0/TempSuite2174091282625377585 /tmp/adamTestMvnQOhk7M0/TempSuite4045586857734678432 /tmp/adamTestMvnQOhk7M0/TempSuite7328254965779204469 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite5352016355346148705.gtf /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite5352016355346148705.gtf/.part-00001.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite5352016355346148705.gtf/.part-00003.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite5352016355346148705.gtf/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite5352016355346148705.gtf/part-00003 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite5352016355346148705.gtf/.part-00000.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite5352016355346148705.gtf/part-00000 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite5352016355346148705.gtf/part-00002 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite5352016355346148705.gtf/_SUCCESS /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite5352016355346148705.gtf/part-00001 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite5352016355346148705.gtf/.part-00002.crc /tmp/adamTestMvnQOhk7M0/TempSuite822557644691189677 /tmp/adamTestMvnQOhk7M0/TempSuite5979052298647429161 /tmp/adamTestMvnQOhk7M0/TempSuite5381046268002801638 /tmp/adamTestMvnQOhk7M0/random.vcf900713286293658624.vcf /tmp/adamTestMvnQOhk7M0/TempSuite5172063230902050536 /tmp/adamTestMvnQOhk7M0/3286549996201795578 /tmp/adamTestMvnQOhk7M0/3286549996201795578/.readname_sorted.sam.crc /tmp/adamTestMvnQOhk7M0/3286549996201795578/readname_sorted.sam /tmp/adamTestMvnQOhk7M0/.TempSuite8469691793259068358_1.fq.crc /tmp/adamTestMvnQOhk7M0/TempSuite8735203111357651238 /tmp/adamTestMvnQOhk7M0/3708189866273053304 /tmp/adamTestMvnQOhk7M0/3708189866273053304/out.cram_head /tmp/adamTestMvnQOhk7M0/3708189866273053304/out.cram_tail /tmp/adamTestMvnQOhk7M0/3708189866273053304/out.cram_tail/.part-r-00001.cram.crc /tmp/adamTestMvnQOhk7M0/3708189866273053304/out.cram_tail/.part-r-00003.cram.crc /tmp/adamTestMvnQOhk7M0/3708189866273053304/out.cram_tail/part-r-00000.cram /tmp/adamTestMvnQOhk7M0/3708189866273053304/out.cram_tail/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/3708189866273053304/out.cram_tail/.part-r-00002.cram.crc /tmp/adamTestMvnQOhk7M0/3708189866273053304/out.cram_tail/part-r-00002.cram /tmp/adamTestMvnQOhk7M0/3708189866273053304/out.cram_tail/_SUCCESS /tmp/adamTestMvnQOhk7M0/3708189866273053304/out.cram_tail/.part-r-00000.cram.crc /tmp/adamTestMvnQOhk7M0/3708189866273053304/out.cram_tail/part-r-00001.cram /tmp/adamTestMvnQOhk7M0/3708189866273053304/out.cram_tail/part-r-00003.cram /tmp/adamTestMvnQOhk7M0/3708189866273053304/.out.cram.crc /tmp/adamTestMvnQOhk7M0/3708189866273053304/out.cram /tmp/adamTestMvnQOhk7M0/3708189866273053304/.out.cram_head.crc /tmp/adamTestMvnQOhk7M0/1568828249711-0 /tmp/adamTestMvnQOhk7M0/1568828249711-0/bqsr1-r2.fq /tmp/adamTestMvnQOhk7M0/1568828249711-0/bqsr1-r2.fq/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/1568828249711-0/bqsr1-r2.fq/.part-00000.crc /tmp/adamTestMvnQOhk7M0/1568828249711-0/bqsr1-r2.fq/part-00000 /tmp/adamTestMvnQOhk7M0/1568828249711-0/bqsr1-r2.fq/_SUCCESS /tmp/adamTestMvnQOhk7M0/1568828249711-0/bqsr1-r1.fq /tmp/adamTestMvnQOhk7M0/1568828249711-0/bqsr1-r1.fq/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/1568828249711-0/bqsr1-r1.fq/.part-00000.crc /tmp/adamTestMvnQOhk7M0/1568828249711-0/bqsr1-r1.fq/part-00000 /tmp/adamTestMvnQOhk7M0/1568828249711-0/bqsr1-r1.fq/_SUCCESS /tmp/adamTestMvnQOhk7M0/sample1.queryname.sam6931340593159343735.queryname.sam /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite4530392910304193032 /tmp/adamTestMvnQOhk7M0/TempSuite6155939592304877304.adam /tmp/adamTestMvnQOhk7M0/TempSuite6155939592304877304.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite6155939592304877304.adam/._partitionedByStartPos.crc /tmp/adamTestMvnQOhk7M0/TempSuite6155939592304877304.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite6155939592304877304.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite6155939592304877304.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/TempSuite6155939592304877304.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite6155939592304877304.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite6155939592304877304.adam/referenceName=1 /tmp/adamTestMvnQOhk7M0/TempSuite6155939592304877304.adam/referenceName=1/positionBin=14 /tmp/adamTestMvnQOhk7M0/TempSuite6155939592304877304.adam/referenceName=1/positionBin=14/part-00000-7f68e569-5789-48db-9f1f-59014d16b825.c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite6155939592304877304.adam/referenceName=1/positionBin=14/.part-00000-7f68e569-5789-48db-9f1f-59014d16b825.c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite6155939592304877304.adam/referenceName=1/positionBin=169 /tmp/adamTestMvnQOhk7M0/TempSuite6155939592304877304.adam/referenceName=1/positionBin=169/part-00001-7f68e569-5789-48db-9f1f-59014d16b825.c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite6155939592304877304.adam/referenceName=1/positionBin=169/.part-00001-7f68e569-5789-48db-9f1f-59014d16b825.c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite6155939592304877304.adam/referenceName=1/positionBin=240 /tmp/adamTestMvnQOhk7M0/TempSuite6155939592304877304.adam/referenceName=1/positionBin=240/.part-00002-7f68e569-5789-48db-9f1f-59014d16b825.c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite6155939592304877304.adam/referenceName=1/positionBin=240/part-00002-7f68e569-5789-48db-9f1f-59014d16b825.c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite6155939592304877304.adam/referenceName=1/positionBin=0 /tmp/adamTestMvnQOhk7M0/TempSuite6155939592304877304.adam/referenceName=1/positionBin=0/part-00000-7f68e569-5789-48db-9f1f-59014d16b825.c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite6155939592304877304.adam/referenceName=1/positionBin=0/.part-00000-7f68e569-5789-48db-9f1f-59014d16b825.c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite6155939592304877304.adam/_partitionedByStartPos /tmp/adamTestMvnQOhk7M0/TempSuite5419731324924024097.fa /tmp/adamTestMvnQOhk7M0/TempSuite5419731324924024097.fa/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite5419731324924024097.fa/.part-00000.crc /tmp/adamTestMvnQOhk7M0/TempSuite5419731324924024097.fa/part-00000 /tmp/adamTestMvnQOhk7M0/TempSuite5419731324924024097.fa/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite886270167706606969.adam /tmp/adamTestMvnQOhk7M0/TempSuite886270167706606969.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite886270167706606969.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite886270167706606969.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite886270167706606969.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite886270167706606969.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite886270167706606969.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite886270167706606969.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite886270167706606969.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite886270167706606969.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite886270167706606969.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite886270167706606969.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite886270167706606969.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/TempSuite886270167706606969.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/TempSuite886270167706606969.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite4475322357585046535 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite248811594307020347.bed /tmp/adamTestMvnQOhk7M0/TempSuite5013844328550905477 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite5182173535275038204 /tmp/adamTestMvnQOhk7M0/artificial.sam606369930010088118.sam /tmp/adamTestMvnQOhk7M0/673710356672289880 /tmp/adamTestMvnQOhk7M0/673710356672289880/variants.lex.adam /tmp/adamTestMvnQOhk7M0/673710356672289880/variants.lex.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/673710356672289880/variants.lex.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/673710356672289880/variants.lex.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/673710356672289880/variants.lex.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/673710356672289880/variants.lex.adam/._header.crc /tmp/adamTestMvnQOhk7M0/673710356672289880/variants.lex.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/673710356672289880/variants.lex.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/673710356672289880/variants.lex.adam/_metadata /tmp/adamTestMvnQOhk7M0/673710356672289880/variants.lex.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/673710356672289880/variants.lex.adam/_references.avro /tmp/adamTestMvnQOhk7M0/673710356672289880/variants.lex.adam/_header /tmp/adamTestMvnQOhk7M0/673710356672289880/variants.lex.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite4277862897234719292 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite2934456310283623406 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7347319125479454944 /tmp/adamTestMvnQOhk7M0/TempSuite8930671883684018549_1.fq /tmp/adamTestMvnQOhk7M0/TempSuite8930671883684018549_1.fq/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite8930671883684018549_1.fq/.part-00000.crc /tmp/adamTestMvnQOhk7M0/TempSuite8930671883684018549_1.fq/part-00000 /tmp/adamTestMvnQOhk7M0/TempSuite8930671883684018549_1.fq/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite1332027850581427303 /tmp/adamTestMvnQOhk7M0/6045759036921963989 /tmp/adamTestMvnQOhk7M0/6045759036921963989/tag.sam /tmp/adamTestMvnQOhk7M0/6045759036921963989/.tag.sam.crc /tmp/adamTestMvnQOhk7M0/TempSuite3744361375869660974 /tmp/adamTestMvnQOhk7M0/.FeatureDatasetFunctionsSuite4487067265352416864.gtf.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6546856861100771943.narrowPeak /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6546856861100771943.narrowPeak/.part-00001.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6546856861100771943.narrowPeak/.part-00003.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6546856861100771943.narrowPeak/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6546856861100771943.narrowPeak/part-00003 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6546856861100771943.narrowPeak/.part-00000.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6546856861100771943.narrowPeak/part-00000 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6546856861100771943.narrowPeak/part-00002 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6546856861100771943.narrowPeak/_SUCCESS /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6546856861100771943.narrowPeak/part-00001 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6546856861100771943.narrowPeak/.part-00002.crc /tmp/adamTestMvnQOhk7M0/TempSuite6550583043766045.adam /tmp/adamTestMvnQOhk7M0/TempSuite6550583043766045.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite6550583043766045.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite6550583043766045.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite6550583043766045.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite6550583043766045.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite6550583043766045.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite6550583043766045.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite6550583043766045.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite6550583043766045.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite6550583043766045.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite6550583043766045.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite6550583043766045.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/TempSuite6550583043766045.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/TempSuite6550583043766045.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7346513153672536079.interval_list /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7346513153672536079.interval_list/.part-00001.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7346513153672536079.interval_list/.part-00003.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7346513153672536079.interval_list/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7346513153672536079.interval_list/part-00003 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7346513153672536079.interval_list/.part-00000.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7346513153672536079.interval_list/part-00000 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7346513153672536079.interval_list/part-00002 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7346513153672536079.interval_list/_SUCCESS /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7346513153672536079.interval_list/part-00001 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7346513153672536079.interval_list/.part-00002.crc /tmp/adamTestMvnQOhk7M0/TempSuite7820580662326187343.vcf /tmp/adamTestMvnQOhk7M0/TempSuite7820580662326187343.vcf/.part-r-00000.crc /tmp/adamTestMvnQOhk7M0/TempSuite7820580662326187343.vcf/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite7820580662326187343.vcf/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite7820580662326187343.vcf/part-r-00000 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite1038719123492135180.interval_list /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite1038719123492135180.interval_list/.part-00001.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite1038719123492135180.interval_list/.part-00003.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite1038719123492135180.interval_list/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite1038719123492135180.interval_list/part-00003 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite1038719123492135180.interval_list/.part-00000.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite1038719123492135180.interval_list/part-00000 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite1038719123492135180.interval_list/part-00002 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite1038719123492135180.interval_list/_SUCCESS /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite1038719123492135180.interval_list/part-00001 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite1038719123492135180.interval_list/.part-00002.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6948987273861032351 /tmp/adamTestMvnQOhk7M0/TempSuite3199347433714738667 /tmp/adamTestMvnQOhk7M0/sorted-variants.lex.vcf9102736937335544758.lex.vcf /tmp/adamTestMvnQOhk7M0/846600470304912307 /tmp/adamTestMvnQOhk7M0/846600470304912307/predicate.2.adam /tmp/adamTestMvnQOhk7M0/846600470304912307/predicate.2.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/846600470304912307/predicate.2.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/846600470304912307/predicate.2.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/846600470304912307/predicate.2.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/846600470304912307/predicate.2.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/846600470304912307/predicate.2.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/846600470304912307/predicate.2.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/846600470304912307/predicate.2.adam/_metadata /tmp/adamTestMvnQOhk7M0/846600470304912307/predicate.2.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/846600470304912307/predicate.2.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/846600470304912307/predicate.2.adam/_references.avro /tmp/adamTestMvnQOhk7M0/846600470304912307/predicate.2.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/846600470304912307/predicate.2.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/846600470304912307/predicate.2.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite4487067265352416864 /tmp/adamTestMvnQOhk7M0/TempSuite9056874961567193877 /tmp/adamTestMvnQOhk7M0/bqsr15039327802279957290 /tmp/adamTestMvnQOhk7M0/bqsr15039327802279957290/bqsr1.bam /tmp/adamTestMvnQOhk7M0/bqsr15039327802279957290/.bqsr1.bam.crc /tmp/adamTestMvnQOhk7M0/.FeatureDatasetFunctionsSuite8856082189248920606.narrowPeak.crc /tmp/adamTestMvnQOhk7M0/TempSuite5124633689338108362.adam /tmp/adamTestMvnQOhk7M0/TempSuite5124633689338108362.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite5124633689338108362.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite5124633689338108362.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite5124633689338108362.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite5124633689338108362.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite5124633689338108362.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite5124633689338108362.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite5124633689338108362.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite5124633689338108362.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite5124633689338108362.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite1720714797389791151 /tmp/adamTestMvnQOhk7M0/TempSuite7258149274076661047.bed /tmp/adamTestMvnQOhk7M0/TempSuite7258149274076661047.bed/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite7258149274076661047.bed/.part-00000.crc /tmp/adamTestMvnQOhk7M0/TempSuite7258149274076661047.bed/part-00000 /tmp/adamTestMvnQOhk7M0/TempSuite7258149274076661047.bed/_SUCCESS /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite5679030208364375870.fasta /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite5679030208364375870.fasta/.part-00001.crc /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite5679030208364375870.fasta/.part-00003.crc /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite5679030208364375870.fasta/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite5679030208364375870.fasta/part-00003 /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite5679030208364375870.fasta/.part-00000.crc /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite5679030208364375870.fasta/part-00000 /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite5679030208364375870.fasta/part-00002 /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite5679030208364375870.fasta/_SUCCESS /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite5679030208364375870.fasta/part-00001 /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite5679030208364375870.fasta/.part-00002.crc /tmp/adamTestMvnQOhk7M0/TempSuite5925891886582606883 /tmp/adamTestMvnQOhk7M0/3018024901622788078 /tmp/adamTestMvnQOhk7M0/3018024901622788078/coverage.adam /tmp/adamTestMvnQOhk7M0/3018024901622788078/coverage.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/3018024901622788078/coverage.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/3018024901622788078/coverage.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/3018024901622788078/coverage.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/3018024901622788078/coverage.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/3018024901622788078/coverage.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/3018024901622788078/coverage.adam/_metadata /tmp/adamTestMvnQOhk7M0/3018024901622788078/coverage.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/3018024901622788078/coverage.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/3018024901622788078/coverage.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/3018024901622788078/coverage.adam/_references.avro /tmp/adamTestMvnQOhk7M0/3018024901622788078/coverage.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/unordered.sam2103121782095372470.sam /tmp/adamTestMvnQOhk7M0/reads4093785683813158431 /tmp/adamTestMvnQOhk7M0/reads4093785683813158431/reads2.fq /tmp/adamTestMvnQOhk7M0/reads4093785683813158431/reads2.fq/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/reads4093785683813158431/reads2.fq/.part-00000.crc /tmp/adamTestMvnQOhk7M0/reads4093785683813158431/reads2.fq/part-00000 /tmp/adamTestMvnQOhk7M0/reads4093785683813158431/reads2.fq/_SUCCESS /tmp/adamTestMvnQOhk7M0/reads4093785683813158431/reads1.fq /tmp/adamTestMvnQOhk7M0/reads4093785683813158431/reads1.fq/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/reads4093785683813158431/reads1.fq/.part-00000.crc /tmp/adamTestMvnQOhk7M0/reads4093785683813158431/reads1.fq/part-00000 /tmp/adamTestMvnQOhk7M0/reads4093785683813158431/reads1.fq/_SUCCESS /tmp/adamTestMvnQOhk7M0/2818623989683724240 /tmp/adamTestMvnQOhk7M0/2818623989683724240/artificial.cram /tmp/adamTestMvnQOhk7M0/2818623989683724240/artificial.cram/part-r-00000.cram /tmp/adamTestMvnQOhk7M0/2818623989683724240/artificial.cram/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/2818623989683724240/artificial.cram/_SUCCESS /tmp/adamTestMvnQOhk7M0/2818623989683724240/artificial.cram/.part-r-00000.cram.crc /tmp/adamTestMvnQOhk7M0/TempSuite770447902477354382.adam /tmp/adamTestMvnQOhk7M0/TempSuite770447902477354382.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite770447902477354382.adam/.part-00000-fbb79d86-1fda-4f16-9617-39a8e39ec48b-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite770447902477354382.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite770447902477354382.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite770447902477354382.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite770447902477354382.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/TempSuite770447902477354382.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite770447902477354382.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite770447902477354382.adam/part-00000-fbb79d86-1fda-4f16-9617-39a8e39ec48b-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite770447902477354382.adam/_header /tmp/adamTestMvnQOhk7M0/javaAC1387188268057534710 /tmp/adamTestMvnQOhk7M0/javaAC1387188268057534710/testRdd.feature.adam /tmp/adamTestMvnQOhk7M0/javaAC1387188268057534710/testRdd.feature.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/javaAC1387188268057534710/testRdd.feature.adam/part-r-00001.gz.parquet /tmp/adamTestMvnQOhk7M0/javaAC1387188268057534710/testRdd.feature.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/javaAC1387188268057534710/testRdd.feature.adam/part-r-00002.gz.parquet /tmp/adamTestMvnQOhk7M0/javaAC1387188268057534710/testRdd.feature.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/javaAC1387188268057534710/testRdd.feature.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/javaAC1387188268057534710/testRdd.feature.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/javaAC1387188268057534710/testRdd.feature.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/javaAC1387188268057534710/testRdd.feature.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/javaAC1387188268057534710/testRdd.feature.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/javaAC1387188268057534710/testRdd.feature.adam/_metadata /tmp/adamTestMvnQOhk7M0/javaAC1387188268057534710/testRdd.feature.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/javaAC1387188268057534710/testRdd.feature.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/javaAC1387188268057534710/testRdd.feature.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/javaAC1387188268057534710/testRdd.feature.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/javaAC1387188268057534710/testRdd.feature.adam/_references.avro /tmp/adamTestMvnQOhk7M0/javaAC1387188268057534710/testRdd.feature.adam/part-r-00003.gz.parquet /tmp/adamTestMvnQOhk7M0/javaAC1387188268057534710/testRdd.feature.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite4318033632945387968.bed /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite4318033632945387968.bed/.part-00001.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite4318033632945387968.bed/.part-00003.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite4318033632945387968.bed/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite4318033632945387968.bed/part-00003 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite4318033632945387968.bed/.part-00000.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite4318033632945387968.bed/part-00000 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite4318033632945387968.bed/part-00002 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite4318033632945387968.bed/_SUCCESS /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite4318033632945387968.bed/part-00001 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite4318033632945387968.bed/.part-00002.crc /tmp/adamTestMvnQOhk7M0/TempSuite6325115145914549467 /tmp/adamTestMvnQOhk7M0/1791147191606251491 /tmp/adamTestMvnQOhk7M0/1791147191606251491/variants.adam /tmp/adamTestMvnQOhk7M0/1791147191606251491/variants.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/1791147191606251491/variants.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/1791147191606251491/variants.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/1791147191606251491/variants.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/1791147191606251491/variants.adam/._header.crc /tmp/adamTestMvnQOhk7M0/1791147191606251491/variants.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/1791147191606251491/variants.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/1791147191606251491/variants.adam/_metadata /tmp/adamTestMvnQOhk7M0/1791147191606251491/variants.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/1791147191606251491/variants.adam/_references.avro /tmp/adamTestMvnQOhk7M0/1791147191606251491/variants.adam/_header /tmp/adamTestMvnQOhk7M0/1791147191606251491/variants.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/2060107459137428762 /tmp/adamTestMvnQOhk7M0/2060107459137428762/coverage.adam /tmp/adamTestMvnQOhk7M0/2060107459137428762/coverage.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/2060107459137428762/coverage.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/2060107459137428762/coverage.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/2060107459137428762/coverage.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/2060107459137428762/coverage.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/2060107459137428762/coverage.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/2060107459137428762/coverage.adam/_metadata /tmp/adamTestMvnQOhk7M0/2060107459137428762/coverage.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/2060107459137428762/coverage.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/2060107459137428762/coverage.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/2060107459137428762/coverage.adam/_references.avro /tmp/adamTestMvnQOhk7M0/2060107459137428762/coverage.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/reads123394321311028740565 /tmp/adamTestMvnQOhk7M0/reads123394321311028740565/reads12.fq /tmp/adamTestMvnQOhk7M0/reads123394321311028740565/reads12.fq/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/reads123394321311028740565/reads12.fq/.part-00000.crc /tmp/adamTestMvnQOhk7M0/reads123394321311028740565/reads12.fq/part-00000 /tmp/adamTestMvnQOhk7M0/reads123394321311028740565/reads12.fq/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite6280606448240310143 /tmp/adamTestMvnQOhk7M0/TempSuite8123286593673717490 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7093526722100633285 /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite3969280530056745575 /tmp/adamTestMvnQOhk7M0/gencode.v7.annotation.trunc10.bed16052595600627579.v7.annotation.trunc10.bed /tmp/adamTestMvnQOhk7M0/TempSuite7345565605839149473 /tmp/adamTestMvnQOhk7M0/TempSuite9022918221568817590 /tmp/adamTestMvnQOhk7M0/TempSuite2322273981625745694.adam /tmp/adamTestMvnQOhk7M0/TempSuite2322273981625745694.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite2322273981625745694.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite2322273981625745694.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite2322273981625745694.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite2322273981625745694.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite2322273981625745694.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite2322273981625745694.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite2322273981625745694.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite2322273981625745694.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite2322273981625745694.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/2293651885133448955 /tmp/adamTestMvnQOhk7M0/2293651885133448955/.artificial.cram.crc /tmp/adamTestMvnQOhk7M0/2293651885133448955/artificial.cram /tmp/adamTestMvnQOhk7M0/TempSuite5862887562136186907 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite132616806797827308.gff3 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite132616806797827308.gff3/.part-00001.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite132616806797827308.gff3/.part-00003.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite132616806797827308.gff3/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite132616806797827308.gff3/part-00003 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite132616806797827308.gff3/.part-00000.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite132616806797827308.gff3/part-00000 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite132616806797827308.gff3/part-00002 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite132616806797827308.gff3/_SUCCESS /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite132616806797827308.gff3/part-00001 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite132616806797827308.gff3/.part-00002.crc /tmp/adamTestMvnQOhk7M0/.TempSuite4732575680820217066.sam.crc /tmp/adamTestMvnQOhk7M0/TempSuite773822798382313410 /tmp/adamTestMvnQOhk7M0/TempSuite4866912726603382408.adam /tmp/adamTestMvnQOhk7M0/TempSuite4866912726603382408.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite4866912726603382408.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite4866912726603382408.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite4866912726603382408.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite4866912726603382408.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite4866912726603382408.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite4866912726603382408.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite4866912726603382408.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite4866912726603382408.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/TempSuite4866912726603382408.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite4866912726603382408.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite4866912726603382408.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite4866912726603382408.adam/_header /tmp/adamTestMvnQOhk7M0/TempSuite4866912726603382408.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite2068502231335164526 /tmp/adamTestMvnQOhk7M0/567994578391783644 /tmp/adamTestMvnQOhk7M0/567994578391783644/.sorted-variants.lex.vcf.crc /tmp/adamTestMvnQOhk7M0/567994578391783644/sorted-variants.lex.vcf /tmp/adamTestMvnQOhk7M0/TempSuite6934225065689741269 /tmp/adamTestMvnQOhk7M0/ordered.sam3759096382289636780.sam /tmp/adamTestMvnQOhk7M0/TempSuite7479322249942876469 /tmp/adamTestMvnQOhk7M0/2978425931197103118 /tmp/adamTestMvnQOhk7M0/2978425931197103118/.readname_sorted.sam.crc /tmp/adamTestMvnQOhk7M0/2978425931197103118/readname_sorted.sam /tmp/adamTestMvnQOhk7M0/TempSuite3676685490943365247.adam /tmp/adamTestMvnQOhk7M0/TempSuite3676685490943365247.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite3676685490943365247.adam/part-r-00001.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite3676685490943365247.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite3676685490943365247.adam/part-r-00002.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite3676685490943365247.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite3676685490943365247.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite3676685490943365247.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite3676685490943365247.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite3676685490943365247.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite3676685490943365247.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite3676685490943365247.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite3676685490943365247.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite3676685490943365247.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite3676685490943365247.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite3676685490943365247.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite3676685490943365247.adam/part-r-00003.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite3676685490943365247.adam/_header /tmp/adamTestMvnQOhk7M0/TempSuite3676685490943365247.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite4426810594497335910.sam /tmp/adamTestMvnQOhk7M0/TempSuite4426810594497335910.sam/part-r-00000.sam /tmp/adamTestMvnQOhk7M0/TempSuite4426810594497335910.sam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite4426810594497335910.sam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite4426810594497335910.sam/.part-r-00000.sam.crc /tmp/adamTestMvnQOhk7M0/TempSuite7876371196018612538.adam /tmp/adamTestMvnQOhk7M0/TempSuite7876371196018612538.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite7876371196018612538.adam/part-r-00001.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite7876371196018612538.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite7876371196018612538.adam/part-r-00002.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite7876371196018612538.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite7876371196018612538.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite7876371196018612538.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite7876371196018612538.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite7876371196018612538.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite7876371196018612538.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite7876371196018612538.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite7876371196018612538.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite7876371196018612538.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/TempSuite7876371196018612538.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite7876371196018612538.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite7876371196018612538.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite7876371196018612538.adam/part-r-00003.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite7876371196018612538.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite5055755457282710692 /tmp/adamTestMvnQOhk7M0/TempSuite5975993087634070664.adam /tmp/adamTestMvnQOhk7M0/TempSuite5975993087634070664.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite5975993087634070664.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite5975993087634070664.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite5975993087634070664.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite5975993087634070664.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite5975993087634070664.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite5975993087634070664.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite5975993087634070664.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite5975993087634070664.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite5975993087634070664.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite7128221550275790346.2.adam /tmp/adamTestMvnQOhk7M0/TempSuite7128221550275790346.2.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite7128221550275790346.2.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite7128221550275790346.2.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite7128221550275790346.2.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite7128221550275790346.2.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite7128221550275790346.2.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite7128221550275790346.2.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite7128221550275790346.2.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite7128221550275790346.2.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite7128221550275790346.2.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite7128221550275790346.2.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite7128221550275790346.2.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/TempSuite7128221550275790346.2.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/TempSuite7128221550275790346.2.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite9009867246478144396 /tmp/adamTestMvnQOhk7M0/TempSuite88551308165395178 /tmp/adamTestMvnQOhk7M0/3429708229655965724 /tmp/adamTestMvnQOhk7M0/3429708229655965724/genotypes.lex.adam /tmp/adamTestMvnQOhk7M0/3429708229655965724/genotypes.lex.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/3429708229655965724/genotypes.lex.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/3429708229655965724/genotypes.lex.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/3429708229655965724/genotypes.lex.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/3429708229655965724/genotypes.lex.adam/._header.crc /tmp/adamTestMvnQOhk7M0/3429708229655965724/genotypes.lex.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/3429708229655965724/genotypes.lex.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/3429708229655965724/genotypes.lex.adam/_metadata /tmp/adamTestMvnQOhk7M0/3429708229655965724/genotypes.lex.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/3429708229655965724/genotypes.lex.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/3429708229655965724/genotypes.lex.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/3429708229655965724/genotypes.lex.adam/_references.avro /tmp/adamTestMvnQOhk7M0/3429708229655965724/genotypes.lex.adam/_header /tmp/adamTestMvnQOhk7M0/3429708229655965724/genotypes.lex.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite8426006362605778860.adam /tmp/adamTestMvnQOhk7M0/TempSuite8426006362605778860.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite8426006362605778860.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite8426006362605778860.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite8426006362605778860.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite8426006362605778860.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite8426006362605778860.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite8426006362605778860.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite8426006362605778860.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite8426006362605778860.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite8426006362605778860.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite8426006362605778860.adam/_header /tmp/adamTestMvnQOhk7M0/TempSuite8426006362605778860.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite8105013424116871059.adam /tmp/adamTestMvnQOhk7M0/TempSuite8105013424116871059.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite8105013424116871059.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite8105013424116871059.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite8105013424116871059.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite8105013424116871059.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite8105013424116871059.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite8105013424116871059.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite8105013424116871059.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite8105013424116871059.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/TempSuite8105013424116871059.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite8105013424116871059.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite8105013424116871059.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite8105013424116871059.adam/_header /tmp/adamTestMvnQOhk7M0/TempSuite8105013424116871059.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite517077388172118812.adam /tmp/adamTestMvnQOhk7M0/TempSuite517077388172118812.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite517077388172118812.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite517077388172118812.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite517077388172118812.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite517077388172118812.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite517077388172118812.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite517077388172118812.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite517077388172118812.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite517077388172118812.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite517077388172118812.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite517077388172118812.adam/_header /tmp/adamTestMvnQOhk7M0/TempSuite517077388172118812.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite8625363476234435141 /tmp/adamTestMvnQOhk7M0/TempSuite4313920202242782220 /tmp/adamTestMvnQOhk7M0/TempSuite2008480538022926937.adam /tmp/adamTestMvnQOhk7M0/TempSuite2008480538022926937.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite2008480538022926937.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite2008480538022926937.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite2008480538022926937.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite2008480538022926937.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite2008480538022926937.adam/part-00000-a84c772f-8844-477f-88cc-495c8f9636d2-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite2008480538022926937.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite2008480538022926937.adam/.part-00000-a84c772f-8844-477f-88cc-495c8f9636d2-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite2008480538022926937.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/TempSuite2008480538022926937.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/TempSuite3843965162072119701 /tmp/adamTestMvnQOhk7M0/bqsr17242331503569479613 /tmp/adamTestMvnQOhk7M0/bqsr17242331503569479613/.bqsr1.sam.crc /tmp/adamTestMvnQOhk7M0/bqsr17242331503569479613/bqsr1.sam /tmp/adamTestMvnQOhk7M0/TempSuite7285942702965857757.adam /tmp/adamTestMvnQOhk7M0/TempSuite7285942702965857757.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite7285942702965857757.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite7285942702965857757.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite7285942702965857757.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite7285942702965857757.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite7285942702965857757.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite7285942702965857757.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite7285942702965857757.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite7285942702965857757.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite7285942702965857757.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite7285942702965857757.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite7285942702965857757.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/TempSuite7285942702965857757.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/TempSuite7285942702965857757.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite5104770600774147220.narrowPeak /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite5104770600774147220.narrowPeak/.part-00001.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite5104770600774147220.narrowPeak/.part-00003.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite5104770600774147220.narrowPeak/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite5104770600774147220.narrowPeak/part-00003 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite5104770600774147220.narrowPeak/.part-00000.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite5104770600774147220.narrowPeak/part-00000 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite5104770600774147220.narrowPeak/part-00002 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite5104770600774147220.narrowPeak/_SUCCESS /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite5104770600774147220.narrowPeak/part-00001 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite5104770600774147220.narrowPeak/.part-00002.crc /tmp/adamTestMvnQOhk7M0/TempSuite136465497824157379 /tmp/adamTestMvnQOhk7M0/TempSuite667879502593500128.adam /tmp/adamTestMvnQOhk7M0/TempSuite667879502593500128.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite667879502593500128.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite667879502593500128.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite667879502593500128.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite667879502593500128.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite667879502593500128.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite667879502593500128.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite667879502593500128.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite667879502593500128.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/TempSuite667879502593500128.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite667879502593500128.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite667879502593500128.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite667879502593500128.adam/_header /tmp/adamTestMvnQOhk7M0/TempSuite667879502593500128.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite1231371451366850853 /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite1006138891800178251.adam /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite1006138891800178251.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite1006138891800178251.adam/part-r-00001.gz.parquet /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite1006138891800178251.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite1006138891800178251.adam/part-r-00002.gz.parquet /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite1006138891800178251.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite1006138891800178251.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite1006138891800178251.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite1006138891800178251.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite1006138891800178251.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite1006138891800178251.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite1006138891800178251.adam/_metadata /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite1006138891800178251.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite1006138891800178251.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite1006138891800178251.adam/_references.avro /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite1006138891800178251.adam/part-r-00003.gz.parquet /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite1006138891800178251.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6948987273861032351.interval_list /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6948987273861032351.interval_list/.part-00001.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6948987273861032351.interval_list/.part-00003.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6948987273861032351.interval_list/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6948987273861032351.interval_list/part-00003 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6948987273861032351.interval_list/.part-00000.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6948987273861032351.interval_list/part-00000 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6948987273861032351.interval_list/part-00002 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6948987273861032351.interval_list/_SUCCESS /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6948987273861032351.interval_list/part-00001 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6948987273861032351.interval_list/.part-00002.crc /tmp/adamTestMvnQOhk7M0/TempSuite5247426431927437896.fa /tmp/adamTestMvnQOhk7M0/TempSuite5247426431927437896.fa/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite5247426431927437896.fa/.part-00000.crc /tmp/adamTestMvnQOhk7M0/TempSuite5247426431927437896.fa/part-00000 /tmp/adamTestMvnQOhk7M0/TempSuite5247426431927437896.fa/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite5923665036922759584.bed /tmp/adamTestMvnQOhk7M0/TempSuite5923665036922759584.bed/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite5923665036922759584.bed/.part-00000.crc /tmp/adamTestMvnQOhk7M0/TempSuite5923665036922759584.bed/part-00000 /tmp/adamTestMvnQOhk7M0/TempSuite5923665036922759584.bed/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite6004676247926473588.adam /tmp/adamTestMvnQOhk7M0/TempSuite6004676247926473588.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite6004676247926473588.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite6004676247926473588.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite6004676247926473588.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite6004676247926473588.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite6004676247926473588.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite6004676247926473588.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite6004676247926473588.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite6004676247926473588.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite6004676247926473588.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/.FeatureDatasetFunctionsSuite4699885440630420301.bed.crc /tmp/adamTestMvnQOhk7M0/TempSuite2692701405493723840.adam /tmp/adamTestMvnQOhk7M0/TempSuite2692701405493723840.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite2692701405493723840.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite2692701405493723840.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite2692701405493723840.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite2692701405493723840.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite2692701405493723840.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite2692701405493723840.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite2692701405493723840.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite2692701405493723840.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite2692701405493723840.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite2692701405493723840.adam/_header /tmp/adamTestMvnQOhk7M0/TempSuite2692701405493723840.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite5982954085592535718.adam /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite5982954085592535718.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite5982954085592535718.adam/part-r-00001.gz.parquet /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite5982954085592535718.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite5982954085592535718.adam/part-r-00002.gz.parquet /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite5982954085592535718.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite5982954085592535718.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite5982954085592535718.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite5982954085592535718.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite5982954085592535718.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite5982954085592535718.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite5982954085592535718.adam/_metadata /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite5982954085592535718.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite5982954085592535718.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite5982954085592535718.adam/_references.avro /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite5982954085592535718.adam/part-r-00003.gz.parquet /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite5982954085592535718.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite8191948016259330414.sam /tmp/adamTestMvnQOhk7M0/TempSuite8191948016259330414.sam/part-r-00000.sam /tmp/adamTestMvnQOhk7M0/TempSuite8191948016259330414.sam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite8191948016259330414.sam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite8191948016259330414.sam/.part-r-00000.sam.crc /tmp/adamTestMvnQOhk7M0/TempSuite6098834606207460011.bed /tmp/adamTestMvnQOhk7M0/TempSuite6098834606207460011.bed/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite6098834606207460011.bed/.part-00000.crc /tmp/adamTestMvnQOhk7M0/TempSuite6098834606207460011.bed/part-00000 /tmp/adamTestMvnQOhk7M0/TempSuite6098834606207460011.bed/_SUCCESS /tmp/adamTestMvnQOhk7M0/random.vcf3023376530849301254.vcf /tmp/adamTestMvnQOhk7M0/TempSuite4245710765097213018.adam /tmp/adamTestMvnQOhk7M0/TempSuite4245710765097213018.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite4245710765097213018.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite4245710765097213018.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite4245710765097213018.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite4245710765097213018.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite4245710765097213018.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite4245710765097213018.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite4245710765097213018.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite4245710765097213018.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite4245710765097213018.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite4245710765097213018.adam/_header /tmp/adamTestMvnQOhk7M0/TempSuite4245710765097213018.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite8082811900885850324 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite4530392910304193032.gtf /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite4530392910304193032.gtf/.part-00001.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite4530392910304193032.gtf/.part-00003.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite4530392910304193032.gtf/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite4530392910304193032.gtf/part-00003 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite4530392910304193032.gtf/.part-00000.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite4530392910304193032.gtf/part-00000 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite4530392910304193032.gtf/part-00002 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite4530392910304193032.gtf/_SUCCESS /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite4530392910304193032.gtf/part-00001 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite4530392910304193032.gtf/.part-00002.crc /tmp/adamTestMvnQOhk7M0/TempSuite5299341422942261197 /tmp/adamTestMvnQOhk7M0/TempSuite5124633689338108362 /tmp/adamTestMvnQOhk7M0/TempSuite7568389828534335239 /tmp/adamTestMvnQOhk7M0/7103225810116352804 /tmp/adamTestMvnQOhk7M0/7103225810116352804/sorted.sam /tmp/adamTestMvnQOhk7M0/7103225810116352804/.sorted.sam.crc /tmp/adamTestMvnQOhk7M0/TempSuite1231371451366850853.adam /tmp/adamTestMvnQOhk7M0/TempSuite1231371451366850853.adam/part-00000-7cc37836-7697-4214-89cc-86150bfad256-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite1231371451366850853.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite1231371451366850853.adam/.part-00000-7cc37836-7697-4214-89cc-86150bfad256-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite1231371451366850853.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite1231371451366850853.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite1231371451366850853.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite1231371451366850853.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite1231371451366850853.adam/_header /tmp/adamTestMvnQOhk7M0/TempSuite7541370866122247274 /tmp/adamTestMvnQOhk7M0/8399082676445371740 /tmp/adamTestMvnQOhk7M0/8399082676445371740/.ordered.sam.crc /tmp/adamTestMvnQOhk7M0/8399082676445371740/ordered.sam /tmp/adamTestMvnQOhk7M0/TempSuite8505169609905511667 /tmp/adamTestMvnQOhk7M0/ordered.sam549131505582667156.sam /tmp/adamTestMvnQOhk7M0/7311535593474341455 /tmp/adamTestMvnQOhk7M0/TempSuite6596809572088763996 /tmp/adamTestMvnQOhk7M0/TempSuite2742898313608025604.adam /tmp/adamTestMvnQOhk7M0/TempSuite2742898313608025604.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite2742898313608025604.adam/part-r-00001.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite2742898313608025604.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite2742898313608025604.adam/part-r-00002.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite2742898313608025604.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite2742898313608025604.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite2742898313608025604.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite2742898313608025604.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite2742898313608025604.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite2742898313608025604.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite2742898313608025604.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite2742898313608025604.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite2742898313608025604.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite2742898313608025604.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite2742898313608025604.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite2742898313608025604.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite2742898313608025604.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/TempSuite2742898313608025604.adam/part-r-00003.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite2742898313608025604.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/TempSuite2742898313608025604.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/3848600832586238897 /tmp/adamTestMvnQOhk7M0/3848600832586238897/unordered.adam /tmp/adamTestMvnQOhk7M0/3848600832586238897/unordered.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/3848600832586238897/unordered.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/3848600832586238897/unordered.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/3848600832586238897/unordered.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/3848600832586238897/unordered.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/3848600832586238897/unordered.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/3848600832586238897/unordered.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/3848600832586238897/unordered.adam/_metadata /tmp/adamTestMvnQOhk7M0/3848600832586238897/unordered.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/3848600832586238897/unordered.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/3848600832586238897/unordered.adam/_references.avro /tmp/adamTestMvnQOhk7M0/3848600832586238897/unordered.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/3848600832586238897/unordered.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/3848600832586238897/unordered.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite825769433156893718.gff3 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite825769433156893718.gff3/.part-00001.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite825769433156893718.gff3/.part-00003.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite825769433156893718.gff3/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite825769433156893718.gff3/part-00003 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite825769433156893718.gff3/.part-00000.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite825769433156893718.gff3/part-00000 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite825769433156893718.gff3/part-00002 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite825769433156893718.gff3/_SUCCESS /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite825769433156893718.gff3/part-00001 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite825769433156893718.gff3/.part-00002.crc /tmp/adamTestMvnQOhk7M0/TempSuite6181963767298098108.bed /tmp/adamTestMvnQOhk7M0/TempSuite6181963767298098108.bed/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite6181963767298098108.bed/.part-00000.crc /tmp/adamTestMvnQOhk7M0/TempSuite6181963767298098108.bed/part-00000 /tmp/adamTestMvnQOhk7M0/TempSuite6181963767298098108.bed/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite5117506487428072254.adam /tmp/adamTestMvnQOhk7M0/TempSuite5117506487428072254.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite5117506487428072254.adam/part-r-00001.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite5117506487428072254.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite5117506487428072254.adam/part-r-00004.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite5117506487428072254.adam/part-r-00002.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite5117506487428072254.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite5117506487428072254.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite5117506487428072254.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite5117506487428072254.adam/.part-r-00004.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite5117506487428072254.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite5117506487428072254.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite5117506487428072254.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite5117506487428072254.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite5117506487428072254.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite5117506487428072254.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/TempSuite5117506487428072254.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite5117506487428072254.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite5117506487428072254.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite5117506487428072254.adam/part-r-00003.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite5117506487428072254.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/9172277137609264930 /tmp/adamTestMvnQOhk7M0/9172277137609264930/binned.adam /tmp/adamTestMvnQOhk7M0/9172277137609264930/binned.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/9172277137609264930/binned.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/9172277137609264930/binned.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/9172277137609264930/binned.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/9172277137609264930/binned.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/9172277137609264930/binned.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/9172277137609264930/binned.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/9172277137609264930/binned.adam/_metadata /tmp/adamTestMvnQOhk7M0/9172277137609264930/binned.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/9172277137609264930/binned.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/9172277137609264930/binned.adam/_references.avro /tmp/adamTestMvnQOhk7M0/9172277137609264930/binned.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/9172277137609264930/binned.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/9172277137609264930/binned.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite751327999137374332.bed /tmp/adamTestMvnQOhk7M0/TempSuite751327999137374332.bed/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite751327999137374332.bed/.part-00000.crc /tmp/adamTestMvnQOhk7M0/TempSuite751327999137374332.bed/part-00000 /tmp/adamTestMvnQOhk7M0/TempSuite751327999137374332.bed/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite8568180833896685013.sam /tmp/adamTestMvnQOhk7M0/TempSuite8568180833896685013.sam/part-r-00000.sam /tmp/adamTestMvnQOhk7M0/TempSuite8568180833896685013.sam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite8568180833896685013.sam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite8568180833896685013.sam/.part-r-00000.sam.crc /tmp/adamTestMvnQOhk7M0/.TempSuite9022918221568817590.fq.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite5627215883746333881 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite8033289390298889515.gtf /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite8033289390298889515.gtf/.part-00001.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite8033289390298889515.gtf/.part-00003.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite8033289390298889515.gtf/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite8033289390298889515.gtf/part-00003 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite8033289390298889515.gtf/.part-00000.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite8033289390298889515.gtf/part-00000 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite8033289390298889515.gtf/part-00002 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite8033289390298889515.gtf/_SUCCESS /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite8033289390298889515.gtf/part-00001 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite8033289390298889515.gtf/.part-00002.crc /tmp/adamTestMvnQOhk7M0/TempSuite1824106881560507751 /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite7902483167454591147.adam /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite7902483167454591147.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite7902483167454591147.adam/part-r-00001.gz.parquet /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite7902483167454591147.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite7902483167454591147.adam/part-r-00002.gz.parquet /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite7902483167454591147.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite7902483167454591147.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite7902483167454591147.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite7902483167454591147.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite7902483167454591147.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite7902483167454591147.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite7902483167454591147.adam/_metadata /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite7902483167454591147.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite7902483167454591147.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite7902483167454591147.adam/_references.avro /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite7902483167454591147.adam/part-r-00003.gz.parquet /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite7902483167454591147.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite895334630676160511 /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite8554669669036311430 /tmp/adamTestMvnQOhk7M0/TempSuite7007350453736446272 /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite5285543531822908876.fasta /tmp/adamTestMvnQOhk7M0/TempSuite1871744865640054700 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite8067766400745210190.gtf /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite4167689874587223259 /tmp/adamTestMvnQOhk7M0/TempSuite6286907281812353928.adam /tmp/adamTestMvnQOhk7M0/TempSuite6286907281812353928.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite6286907281812353928.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite6286907281812353928.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite6286907281812353928.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite6286907281812353928.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite6286907281812353928.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite6286907281812353928.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite6286907281812353928.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite6286907281812353928.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite6286907281812353928.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite6286907281812353928.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite6286907281812353928.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/TempSuite6286907281812353928.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/TempSuite6286907281812353928.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite3397054518667381035.adam /tmp/adamTestMvnQOhk7M0/TempSuite3397054518667381035.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite3397054518667381035.adam/.part-00000-093df678-a557-4464-abb2-7f42ca825cc0-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite3397054518667381035.adam/.part-00001-093df678-a557-4464-abb2-7f42ca825cc0-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite3397054518667381035.adam/part-00001-093df678-a557-4464-abb2-7f42ca825cc0-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite3397054518667381035.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite3397054518667381035.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite3397054518667381035.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/TempSuite3397054518667381035.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite3397054518667381035.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite3397054518667381035.adam/part-00000-093df678-a557-4464-abb2-7f42ca825cc0-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite3397054518667381035.adam/part-00002-093df678-a557-4464-abb2-7f42ca825cc0-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite3397054518667381035.adam/.part-00002-093df678-a557-4464-abb2-7f42ca825cc0-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite3277477198596499543.adam /tmp/adamTestMvnQOhk7M0/TempSuite3277477198596499543.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite3277477198596499543.adam/part-r-00001.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite3277477198596499543.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite3277477198596499543.adam/part-r-00002.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite3277477198596499543.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite3277477198596499543.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite3277477198596499543.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite3277477198596499543.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite3277477198596499543.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite3277477198596499543.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite3277477198596499543.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite3277477198596499543.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite3277477198596499543.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite3277477198596499543.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite3277477198596499543.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite3277477198596499543.adam/part-r-00003.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite3277477198596499543.adam/_header /tmp/adamTestMvnQOhk7M0/TempSuite3277477198596499543.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite2374101702432659220 /tmp/adamTestMvnQOhk7M0/TempSuite3815572572247673839.adam /tmp/adamTestMvnQOhk7M0/TempSuite3815572572247673839.adam/.part-00000-c24c4635-6d20-47e5-b260-780f768d9e9e-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite3815572572247673839.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite3815572572247673839.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite3815572572247673839.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite3815572572247673839.adam/part-00000-c24c4635-6d20-47e5-b260-780f768d9e9e-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite3815572572247673839.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite3815572572247673839.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite3815572572247673839.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite3815572572247673839.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/TempSuite3815572572247673839.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite132616806797827308 /tmp/adamTestMvnQOhk7M0/296340491971479897 /tmp/adamTestMvnQOhk7M0/296340491971479897/unordered.sam /tmp/adamTestMvnQOhk7M0/296340491971479897/.unordered.sam.crc /tmp/adamTestMvnQOhk7M0/TempSuite1713593188967719646 /tmp/adamTestMvnQOhk7M0/TempSuite9022918221568817590.fq /tmp/adamTestMvnQOhk7M0/TempSuite4051357291885849757.adam /tmp/adamTestMvnQOhk7M0/TempSuite4051357291885849757.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite4051357291885849757.adam/part-00000-2e925f73-862f-481a-92b3-fa677d46c086-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite4051357291885849757.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite4051357291885849757.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite4051357291885849757.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite4051357291885849757.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite4051357291885849757.adam/.part-00000-2e925f73-862f-481a-92b3-fa677d46c086-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite4051357291885849757.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite4051357291885849757.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/TempSuite4051357291885849757.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/TempSuite194822740760181891.adam /tmp/adamTestMvnQOhk7M0/TempSuite194822740760181891.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite194822740760181891.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite194822740760181891.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite194822740760181891.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite194822740760181891.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite194822740760181891.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite194822740760181891.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite194822740760181891.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite194822740760181891.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite194822740760181891.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/6100381182177057850 /tmp/adamTestMvnQOhk7M0/6100381182177057850/genotypes.adam /tmp/adamTestMvnQOhk7M0/6100381182177057850/genotypes.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/6100381182177057850/genotypes.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/6100381182177057850/genotypes.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/6100381182177057850/genotypes.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/6100381182177057850/genotypes.adam/._header.crc /tmp/adamTestMvnQOhk7M0/6100381182177057850/genotypes.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/6100381182177057850/genotypes.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/6100381182177057850/genotypes.adam/_metadata /tmp/adamTestMvnQOhk7M0/6100381182177057850/genotypes.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/6100381182177057850/genotypes.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/6100381182177057850/genotypes.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/6100381182177057850/genotypes.adam/_references.avro /tmp/adamTestMvnQOhk7M0/6100381182177057850/genotypes.adam/_header /tmp/adamTestMvnQOhk7M0/6100381182177057850/genotypes.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite2814140461427589364 /tmp/adamTestMvnQOhk7M0/3406655781551620405 /tmp/adamTestMvnQOhk7M0/3406655781551620405/genotypes.nested-annotations.adam /tmp/adamTestMvnQOhk7M0/3406655781551620405/genotypes.nested-annotations.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/3406655781551620405/genotypes.nested-annotations.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/3406655781551620405/genotypes.nested-annotations.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/3406655781551620405/genotypes.nested-annotations.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/3406655781551620405/genotypes.nested-annotations.adam/._header.crc /tmp/adamTestMvnQOhk7M0/3406655781551620405/genotypes.nested-annotations.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/3406655781551620405/genotypes.nested-annotations.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/3406655781551620405/genotypes.nested-annotations.adam/_metadata /tmp/adamTestMvnQOhk7M0/3406655781551620405/genotypes.nested-annotations.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/3406655781551620405/genotypes.nested-annotations.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/3406655781551620405/genotypes.nested-annotations.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/3406655781551620405/genotypes.nested-annotations.adam/_references.avro /tmp/adamTestMvnQOhk7M0/3406655781551620405/genotypes.nested-annotations.adam/_header /tmp/adamTestMvnQOhk7M0/3406655781551620405/genotypes.nested-annotations.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite3429610231863741938.adam /tmp/adamTestMvnQOhk7M0/TempSuite3429610231863741938.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite3429610231863741938.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite3429610231863741938.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite3429610231863741938.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite3429610231863741938.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite3429610231863741938.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite3429610231863741938.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite3429610231863741938.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite3429610231863741938.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite3429610231863741938.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite3429610231863741938.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite3429610231863741938.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/TempSuite3429610231863741938.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/TempSuite3429610231863741938.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite896210047620218867_1.fq /tmp/adamTestMvnQOhk7M0/TempSuite1387751269677908721.adam /tmp/adamTestMvnQOhk7M0/TempSuite1387751269677908721.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite1387751269677908721.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite1387751269677908721.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite1387751269677908721.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite1387751269677908721.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite1387751269677908721.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite1387751269677908721.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite1387751269677908721.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite1387751269677908721.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite1387751269677908721.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite1387751269677908721.adam/_header /tmp/adamTestMvnQOhk7M0/TempSuite1387751269677908721.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/random.vcf1912181514690977116.vcf /tmp/adamTestMvnQOhk7M0/TempSuite984269380841278748.adam /tmp/adamTestMvnQOhk7M0/TempSuite984269380841278748.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite984269380841278748.adam/part-00000-2aef58e7-cfbf-43e4-a6a8-7e6993f59ff3-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite984269380841278748.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite984269380841278748.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite984269380841278748.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite984269380841278748.adam/.part-00000-2aef58e7-cfbf-43e4-a6a8-7e6993f59ff3-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite984269380841278748.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/TempSuite984269380841278748.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite984269380841278748.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite984269380841278748.adam/_header /tmp/adamTestMvnQOhk7M0/unordered.sam18501074967857102.sam /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7648784047023905434.narrowPeak /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7648784047023905434.narrowPeak/.part-00001.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7648784047023905434.narrowPeak/.part-00003.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7648784047023905434.narrowPeak/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7648784047023905434.narrowPeak/part-00003 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7648784047023905434.narrowPeak/.part-00000.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7648784047023905434.narrowPeak/part-00000 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7648784047023905434.narrowPeak/part-00002 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7648784047023905434.narrowPeak/_SUCCESS /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7648784047023905434.narrowPeak/part-00001 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7648784047023905434.narrowPeak/.part-00002.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite4626052955440633696.gff3 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite4626052955440633696.gff3/.part-00001.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite4626052955440633696.gff3/.part-00003.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite4626052955440633696.gff3/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite4626052955440633696.gff3/part-00003 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite4626052955440633696.gff3/.part-00000.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite4626052955440633696.gff3/part-00000 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite4626052955440633696.gff3/part-00002 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite4626052955440633696.gff3/_SUCCESS /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite4626052955440633696.gff3/part-00001 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite4626052955440633696.gff3/.part-00002.crc /tmp/adamTestMvnQOhk7M0/TempSuite537475456734941035 /tmp/adamTestMvnQOhk7M0/TempSuite8593153269556503931 /tmp/adamTestMvnQOhk7M0/TempSuite6870932721488515441.adam /tmp/adamTestMvnQOhk7M0/TempSuite6870932721488515441.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite6870932721488515441.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite6870932721488515441.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite6870932721488515441.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite6870932721488515441.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite6870932721488515441.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite6870932721488515441.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite6870932721488515441.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite6870932721488515441.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite6870932721488515441.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite6870932721488515441.adam/_header /tmp/adamTestMvnQOhk7M0/TempSuite6870932721488515441.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/6130381468419664186 /tmp/adamTestMvnQOhk7M0/6130381468419664186/sorted.lex.vcf /tmp/adamTestMvnQOhk7M0/6130381468419664186/.sorted.lex.vcf.crc /tmp/adamTestMvnQOhk7M0/TempSuite6965316427576072772.bam /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite1506694535171149799 /tmp/adamTestMvnQOhk7M0/TempSuite7820580662326187343 /tmp/adamTestMvnQOhk7M0/unordered.sam6936567176211539626.sam /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite564391810597379666.gtf /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite564391810597379666.gtf/.part-00001.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite564391810597379666.gtf/.part-00003.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite564391810597379666.gtf/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite564391810597379666.gtf/part-00003 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite564391810597379666.gtf/.part-00000.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite564391810597379666.gtf/part-00000 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite564391810597379666.gtf/part-00002 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite564391810597379666.gtf/_SUCCESS /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite564391810597379666.gtf/part-00001 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite564391810597379666.gtf/.part-00002.crc /tmp/adamTestMvnQOhk7M0/TempSuite3675555420534648234 /tmp/adamTestMvnQOhk7M0/2291091287987059159 /tmp/adamTestMvnQOhk7M0/2291091287987059159/variants.adam /tmp/adamTestMvnQOhk7M0/2291091287987059159/variants.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/2291091287987059159/variants.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/2291091287987059159/variants.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/2291091287987059159/variants.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/2291091287987059159/variants.adam/._header.crc /tmp/adamTestMvnQOhk7M0/2291091287987059159/variants.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/2291091287987059159/variants.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/2291091287987059159/variants.adam/_metadata /tmp/adamTestMvnQOhk7M0/2291091287987059159/variants.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/2291091287987059159/variants.adam/_references.avro /tmp/adamTestMvnQOhk7M0/2291091287987059159/variants.adam/_header /tmp/adamTestMvnQOhk7M0/2291091287987059159/variants.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite7434240876635398317 /tmp/adamTestMvnQOhk7M0/TempSuite5975993087634070664 /tmp/adamTestMvnQOhk7M0/TempSuite6804261728909212990.adam /tmp/adamTestMvnQOhk7M0/TempSuite6804261728909212990.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite6804261728909212990.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite6804261728909212990.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite6804261728909212990.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite6804261728909212990.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite6804261728909212990.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite6804261728909212990.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite6804261728909212990.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite6804261728909212990.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite6804261728909212990.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite2683299898081122327.adam /tmp/adamTestMvnQOhk7M0/TempSuite2683299898081122327.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite2683299898081122327.adam/part-r-00001.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite2683299898081122327.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite2683299898081122327.adam/part-r-00002.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite2683299898081122327.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite2683299898081122327.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite2683299898081122327.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite2683299898081122327.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite2683299898081122327.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite2683299898081122327.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite2683299898081122327.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite2683299898081122327.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite2683299898081122327.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/TempSuite2683299898081122327.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite2683299898081122327.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite2683299898081122327.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite2683299898081122327.adam/part-r-00003.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite2683299898081122327.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite782452868692471160 /tmp/adamTestMvnQOhk7M0/7909597501186640729 /tmp/adamTestMvnQOhk7M0/7909597501186640729/.ordered.sam.crc /tmp/adamTestMvnQOhk7M0/7909597501186640729/ordered.sam /tmp/adamTestMvnQOhk7M0/TempSuite4182624584591647478.adam /tmp/adamTestMvnQOhk7M0/TempSuite4182624584591647478.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite4182624584591647478.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite4182624584591647478.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite4182624584591647478.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite4182624584591647478.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite4182624584591647478.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite4182624584591647478.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite4182624584591647478.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite4182624584591647478.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite4182624584591647478.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite4182624584591647478.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite4182624584591647478.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/TempSuite4182624584591647478.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/TempSuite4182624584591647478.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/311587646907724974 /tmp/adamTestMvnQOhk7M0/311587646907724974/unordered.sam /tmp/adamTestMvnQOhk7M0/311587646907724974/.unordered.sam.crc /tmp/adamTestMvnQOhk7M0/bqsr13405750338273577732 /tmp/adamTestMvnQOhk7M0/bqsr13405750338273577732/bqsr1.bam /tmp/adamTestMvnQOhk7M0/bqsr13405750338273577732/.bqsr1.bam.crc /tmp/adamTestMvnQOhk7M0/random.vcf9102404159352110243.vcf /tmp/adamTestMvnQOhk7M0/TempSuite7343004181977026975.bam /tmp/adamTestMvnQOhk7M0/TempSuite7343004181977026975.bam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite7343004181977026975.bam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite7343004181977026975.bam/.part-r-00000.bam.crc /tmp/adamTestMvnQOhk7M0/TempSuite7343004181977026975.bam/part-r-00000.bam /tmp/adamTestMvnQOhk7M0/TempSuite608919554647579225.adam /tmp/adamTestMvnQOhk7M0/TempSuite608919554647579225.adam/part-00001-7ad09c0e-1699-41ae-9ada-a06aaba72798-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite608919554647579225.adam/part-00000-7ad09c0e-1699-41ae-9ada-a06aaba72798-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite608919554647579225.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite608919554647579225.adam/part-00002-7ad09c0e-1699-41ae-9ada-a06aaba72798-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite608919554647579225.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite608919554647579225.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite608919554647579225.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite608919554647579225.adam/.part-00001-7ad09c0e-1699-41ae-9ada-a06aaba72798-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite608919554647579225.adam/.part-00002-7ad09c0e-1699-41ae-9ada-a06aaba72798-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite608919554647579225.adam/.part-00000-7ad09c0e-1699-41ae-9ada-a06aaba72798-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite1237974308466402234 /tmp/adamTestMvnQOhk7M0/TempSuite9137366229846946261 /tmp/adamTestMvnQOhk7M0/TempSuite3090531032946481465 /tmp/adamTestMvnQOhk7M0/TempSuite8105013424116871059 /tmp/adamTestMvnQOhk7M0/TempSuite3843965162072119701.adam /tmp/adamTestMvnQOhk7M0/TempSuite3843965162072119701.adam/.part-00002-c876d3f8-9f63-471d-8a62-7e48fef62a54-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite3843965162072119701.adam/.part-00000-c876d3f8-9f63-471d-8a62-7e48fef62a54-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite3843965162072119701.adam/part-00001-c876d3f8-9f63-471d-8a62-7e48fef62a54-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite3843965162072119701.adam/.part-00001-c876d3f8-9f63-471d-8a62-7e48fef62a54-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite3843965162072119701.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite3843965162072119701.adam/part-00002-c876d3f8-9f63-471d-8a62-7e48fef62a54-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite3843965162072119701.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite3843965162072119701.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite3843965162072119701.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/TempSuite3843965162072119701.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite3843965162072119701.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite3843965162072119701.adam/part-00000-c876d3f8-9f63-471d-8a62-7e48fef62a54-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/.FeatureDatasetFunctionsSuite248811594307020347.bed.crc /tmp/adamTestMvnQOhk7M0/TempSuite76178969003945197.adam /tmp/adamTestMvnQOhk7M0/TempSuite76178969003945197.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite76178969003945197.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite76178969003945197.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite76178969003945197.adam/.part-00000-794075d7-06eb-4803-ba0a-2f2266d60ee8-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite76178969003945197.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite76178969003945197.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite76178969003945197.adam/part-00000-794075d7-06eb-4803-ba0a-2f2266d60ee8-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite76178969003945197.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite76178969003945197.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/TempSuite76178969003945197.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/TempSuite7028346209037138704.adam /tmp/adamTestMvnQOhk7M0/TempSuite7028346209037138704.adam/part-00002-85b91490-0c9d-4408-a93c-edc4e5499fd1-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite7028346209037138704.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite7028346209037138704.adam/part-00001-85b91490-0c9d-4408-a93c-edc4e5499fd1-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite7028346209037138704.adam/.part-00001-85b91490-0c9d-4408-a93c-edc4e5499fd1-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite7028346209037138704.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite7028346209037138704.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite7028346209037138704.adam/.part-00002-85b91490-0c9d-4408-a93c-edc4e5499fd1-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite7028346209037138704.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite7028346209037138704.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/TempSuite7028346209037138704.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite7028346209037138704.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite7028346209037138704.adam/_header /tmp/adamTestMvnQOhk7M0/TempSuite7028346209037138704.adam/part-00000-85b91490-0c9d-4408-a93c-edc4e5499fd1-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite7028346209037138704.adam/.part-00000-85b91490-0c9d-4408-a93c-edc4e5499fd1-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite671578242362267636.gff3 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite671578242362267636.gff3/.part-00001.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite671578242362267636.gff3/.part-00003.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite671578242362267636.gff3/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite671578242362267636.gff3/part-00003 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite671578242362267636.gff3/.part-00000.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite671578242362267636.gff3/part-00000 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite671578242362267636.gff3/part-00002 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite671578242362267636.gff3/_SUCCESS /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite671578242362267636.gff3/part-00001 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite671578242362267636.gff3/.part-00002.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7346513153672536079 /tmp/adamTestMvnQOhk7M0/TempSuite7172522845877617075.bed /tmp/adamTestMvnQOhk7M0/TempSuite7172522845877617075.bed/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite7172522845877617075.bed/.part-00000.crc /tmp/adamTestMvnQOhk7M0/TempSuite7172522845877617075.bed/part-00000 /tmp/adamTestMvnQOhk7M0/TempSuite7172522845877617075.bed/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite6325115145914549467.fq /tmp/adamTestMvnQOhk7M0/TempSuite6325115145914549467.fq/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite6325115145914549467.fq/.part-00000.crc /tmp/adamTestMvnQOhk7M0/TempSuite6325115145914549467.fq/part-00000 /tmp/adamTestMvnQOhk7M0/TempSuite6325115145914549467.fq/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite3630150137750968623.adam /tmp/adamTestMvnQOhk7M0/TempSuite3630150137750968623.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite3630150137750968623.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite3630150137750968623.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite3630150137750968623.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite3630150137750968623.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite3630150137750968623.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite3630150137750968623.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite3630150137750968623.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite3630150137750968623.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite3630150137750968623.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/6328614805216349853 /tmp/adamTestMvnQOhk7M0/6328614805216349853/genotypes.adam /tmp/adamTestMvnQOhk7M0/6328614805216349853/genotypes.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/6328614805216349853/genotypes.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/6328614805216349853/genotypes.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/6328614805216349853/genotypes.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/6328614805216349853/genotypes.adam/._header.crc /tmp/adamTestMvnQOhk7M0/6328614805216349853/genotypes.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/6328614805216349853/genotypes.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/6328614805216349853/genotypes.adam/_metadata /tmp/adamTestMvnQOhk7M0/6328614805216349853/genotypes.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/6328614805216349853/genotypes.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/6328614805216349853/genotypes.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/6328614805216349853/genotypes.adam/_references.avro /tmp/adamTestMvnQOhk7M0/6328614805216349853/genotypes.adam/_header /tmp/adamTestMvnQOhk7M0/6328614805216349853/genotypes.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite854951212020829368 /tmp/adamTestMvnQOhk7M0/random.vcf304893265228797873.vcf /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite4167689874587223259.bed /tmp/adamTestMvnQOhk7M0/TempSuite6965316427576072772 /tmp/adamTestMvnQOhk7M0/TempSuite4655562968502465991.adam /tmp/adamTestMvnQOhk7M0/TempSuite4655562968502465991.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite4655562968502465991.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite4655562968502465991.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite4655562968502465991.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite4655562968502465991.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite4655562968502465991.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite4655562968502465991.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite4655562968502465991.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite4655562968502465991.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/TempSuite4655562968502465991.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite4655562968502465991.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite4655562968502465991.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite4655562968502465991.adam/_header /tmp/adamTestMvnQOhk7M0/TempSuite4655562968502465991.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite3626697070549007726.bed /tmp/adamTestMvnQOhk7M0/TempSuite3626697070549007726.bed/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite3626697070549007726.bed/.part-00000.crc /tmp/adamTestMvnQOhk7M0/TempSuite3626697070549007726.bed/part-00000 /tmp/adamTestMvnQOhk7M0/TempSuite3626697070549007726.bed/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite7400974479333463199 /tmp/adamTestMvnQOhk7M0/1568827430264-0 /tmp/adamTestMvnQOhk7M0/1568827430264-0/bamReads.adam /tmp/adamTestMvnQOhk7M0/1568827430264-0/bamReads.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/1568827430264-0/bamReads.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/1568827430264-0/bamReads.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/1568827430264-0/bamReads.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/1568827430264-0/bamReads.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/1568827430264-0/bamReads.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/1568827430264-0/bamReads.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/1568827430264-0/bamReads.adam/_metadata /tmp/adamTestMvnQOhk7M0/1568827430264-0/bamReads.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/1568827430264-0/bamReads.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/1568827430264-0/bamReads.adam/_references.avro /tmp/adamTestMvnQOhk7M0/1568827430264-0/bamReads.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/1568827430264-0/bamReads.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/1568827430264-0/bamReads.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite4954964087334629169.sam /tmp/adamTestMvnQOhk7M0/TempSuite4954964087334629169.sam/part-r-00000.sam /tmp/adamTestMvnQOhk7M0/TempSuite4954964087334629169.sam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite4954964087334629169.sam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite4954964087334629169.sam/.part-r-00000.sam.crc /tmp/adamTestMvnQOhk7M0/TempSuite8623672424989740141.sam /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite8103644441071410815 /tmp/adamTestMvnQOhk7M0/TempSuite6286907281812353928 /tmp/adamTestMvnQOhk7M0/TempSuite6972701458166534539.adam /tmp/adamTestMvnQOhk7M0/TempSuite6972701458166534539.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite6972701458166534539.adam/part-r-00001.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite6972701458166534539.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite6972701458166534539.adam/part-r-00002.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite6972701458166534539.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite6972701458166534539.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite6972701458166534539.adam/_partitionMap.avro /tmp/adamTestMvnQOhk7M0/TempSuite6972701458166534539.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite6972701458166534539.adam/._partitionMap.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite6972701458166534539.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite6972701458166534539.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite6972701458166534539.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite6972701458166534539.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite6972701458166534539.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite6972701458166534539.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite6972701458166534539.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite6972701458166534539.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite6972701458166534539.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite6972701458166534539.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/TempSuite6972701458166534539.adam/part-r-00003.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite6972701458166534539.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/TempSuite6972701458166534539.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite4377172455898514185 /tmp/adamTestMvnQOhk7M0/TempSuite2744001901340459876.bed /tmp/adamTestMvnQOhk7M0/TempSuite2744001901340459876.bed/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite2744001901340459876.bed/.part-00000.crc /tmp/adamTestMvnQOhk7M0/TempSuite2744001901340459876.bed/part-00000 /tmp/adamTestMvnQOhk7M0/TempSuite2744001901340459876.bed/_SUCCESS /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite2934456310283623406.gtf /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite2934456310283623406.gtf/.part-00001.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite2934456310283623406.gtf/.part-00003.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite2934456310283623406.gtf/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite2934456310283623406.gtf/part-00003 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite2934456310283623406.gtf/.part-00000.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite2934456310283623406.gtf/part-00000 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite2934456310283623406.gtf/part-00002 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite2934456310283623406.gtf/_SUCCESS /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite2934456310283623406.gtf/part-00001 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite2934456310283623406.gtf/.part-00002.crc /tmp/adamTestMvnQOhk7M0/TempSuite822557644691189677.adam /tmp/adamTestMvnQOhk7M0/TempSuite822557644691189677.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite822557644691189677.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite822557644691189677.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite822557644691189677.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite822557644691189677.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite822557644691189677.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite822557644691189677.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite822557644691189677.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite822557644691189677.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite822557644691189677.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite822557644691189677.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite822557644691189677.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/TempSuite822557644691189677.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/TempSuite822557644691189677.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/4603078071423260505 /tmp/adamTestMvnQOhk7M0/4603078071423260505/.small.vcf.bgz.crc /tmp/adamTestMvnQOhk7M0/4603078071423260505/small.vcf.bgz /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7094146840554147110.gff3 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7094146840554147110.gff3/.part-00001.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7094146840554147110.gff3/.part-00003.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7094146840554147110.gff3/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7094146840554147110.gff3/part-00003 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7094146840554147110.gff3/.part-00000.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7094146840554147110.gff3/part-00000 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7094146840554147110.gff3/part-00002 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7094146840554147110.gff3/_SUCCESS /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7094146840554147110.gff3/part-00001 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7094146840554147110.gff3/.part-00002.crc /tmp/adamTestMvnQOhk7M0/3732761221303716755 /tmp/adamTestMvnQOhk7M0/3732761221303716755/out.sam_head /tmp/adamTestMvnQOhk7M0/3732761221303716755/.out.sam_head.crc /tmp/adamTestMvnQOhk7M0/3732761221303716755/out.sam_tail /tmp/adamTestMvnQOhk7M0/3732761221303716755/out.sam_tail/part-r-00002.sam /tmp/adamTestMvnQOhk7M0/3732761221303716755/out.sam_tail/part-r-00000.sam /tmp/adamTestMvnQOhk7M0/3732761221303716755/out.sam_tail/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/3732761221303716755/out.sam_tail/_SUCCESS /tmp/adamTestMvnQOhk7M0/3732761221303716755/out.sam_tail/.part-r-00000.sam.crc /tmp/adamTestMvnQOhk7M0/3732761221303716755/out.sam_tail/part-r-00003.sam /tmp/adamTestMvnQOhk7M0/3732761221303716755/out.sam_tail/.part-r-00002.sam.crc /tmp/adamTestMvnQOhk7M0/3732761221303716755/out.sam_tail/.part-r-00001.sam.crc /tmp/adamTestMvnQOhk7M0/3732761221303716755/out.sam_tail/part-r-00001.sam /tmp/adamTestMvnQOhk7M0/3732761221303716755/out.sam_tail/.part-r-00003.sam.crc /tmp/adamTestMvnQOhk7M0/3732761221303716755/.out.sam.crc /tmp/adamTestMvnQOhk7M0/3732761221303716755/out.sam /tmp/adamTestMvnQOhk7M0/TempSuite1667025770223459056.adam /tmp/adamTestMvnQOhk7M0/TempSuite1667025770223459056.adam/part-00001-9126eefa-47a6-452a-98e8-16254029347c-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite1667025770223459056.adam/part-00000-9126eefa-47a6-452a-98e8-16254029347c-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite1667025770223459056.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite1667025770223459056.adam/part-00002-9126eefa-47a6-452a-98e8-16254029347c-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite1667025770223459056.adam/.part-00000-9126eefa-47a6-452a-98e8-16254029347c-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite1667025770223459056.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite1667025770223459056.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite1667025770223459056.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite1667025770223459056.adam/.part-00002-9126eefa-47a6-452a-98e8-16254029347c-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite1667025770223459056.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite1667025770223459056.adam/.part-00001-9126eefa-47a6-452a-98e8-16254029347c-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite1667025770223459056.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite1667025770223459056.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/TempSuite1667025770223459056.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/TempSuite96077031734758653.adam /tmp/adamTestMvnQOhk7M0/TempSuite96077031734758653.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite96077031734758653.adam/.part-00000-07bacd60-9199-4a42-be0f-e88ab22b1e36-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite96077031734758653.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite96077031734758653.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite96077031734758653.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite96077031734758653.adam/part-00000-07bacd60-9199-4a42-be0f-e88ab22b1e36-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite96077031734758653.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/TempSuite96077031734758653.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite96077031734758653.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite96077031734758653.adam/_header /tmp/adamTestMvnQOhk7M0/TempSuite5354860772911093858 /tmp/adamTestMvnQOhk7M0/TempSuite3645139009939371592 /tmp/adamTestMvnQOhk7M0/TempSuite2157334334782860530 /tmp/adamTestMvnQOhk7M0/TempSuite136465497824157379.adam /tmp/adamTestMvnQOhk7M0/TempSuite136465497824157379.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite136465497824157379.adam/part-r-00001.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite136465497824157379.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite136465497824157379.adam/part-r-00004.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite136465497824157379.adam/part-r-00002.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite136465497824157379.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite136465497824157379.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite136465497824157379.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite136465497824157379.adam/.part-r-00004.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite136465497824157379.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite136465497824157379.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite136465497824157379.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite136465497824157379.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite136465497824157379.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite136465497824157379.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/TempSuite136465497824157379.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite136465497824157379.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite136465497824157379.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite136465497824157379.adam/part-r-00003.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite136465497824157379.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/bqsr1.sam4876741137018447143.sam /tmp/adamTestMvnQOhk7M0/3352883217711598698 /tmp/adamTestMvnQOhk7M0/3352883217711598698/sorted.lex.vcf /tmp/adamTestMvnQOhk7M0/3352883217711598698/.sorted.lex.vcf.crc /tmp/adamTestMvnQOhk7M0/TempSuite4475322357585046535.bed /tmp/adamTestMvnQOhk7M0/TempSuite4475322357585046535.bed/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite4475322357585046535.bed/.part-00000.crc /tmp/adamTestMvnQOhk7M0/TempSuite4475322357585046535.bed/part-00000 /tmp/adamTestMvnQOhk7M0/TempSuite4475322357585046535.bed/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite5159859201484477265.adam /tmp/adamTestMvnQOhk7M0/TempSuite5159859201484477265.adam/part-00001-2fc98dfd-a18f-44fa-95a7-c1255c9b2a41-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite5159859201484477265.adam/.part-00001-2fc98dfd-a18f-44fa-95a7-c1255c9b2a41-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite5159859201484477265.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite5159859201484477265.adam/part-00002-2fc98dfd-a18f-44fa-95a7-c1255c9b2a41-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite5159859201484477265.adam/.part-00002-2fc98dfd-a18f-44fa-95a7-c1255c9b2a41-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite5159859201484477265.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite5159859201484477265.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite5159859201484477265.adam/part-00000-2fc98dfd-a18f-44fa-95a7-c1255c9b2a41-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite5159859201484477265.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite5159859201484477265.adam/.part-00000-2fc98dfd-a18f-44fa-95a7-c1255c9b2a41-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite5159859201484477265.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/TempSuite5159859201484477265.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite5159859201484477265.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite5159859201484477265.adam/_header /tmp/adamTestMvnQOhk7M0/TempSuite3587274299905719305 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite5352016355346148705 /tmp/adamTestMvnQOhk7M0/javaAC8455571063273119463 /tmp/adamTestMvnQOhk7M0/javaAC8455571063273119463/testRdd.sequences.adam /tmp/adamTestMvnQOhk7M0/javaAC8455571063273119463/testRdd.sequences.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/javaAC8455571063273119463/testRdd.sequences.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/javaAC8455571063273119463/testRdd.sequences.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/javaAC8455571063273119463/testRdd.sequences.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/javaAC8455571063273119463/testRdd.sequences.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/javaAC8455571063273119463/testRdd.sequences.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/javaAC8455571063273119463/testRdd.sequences.adam/_metadata /tmp/adamTestMvnQOhk7M0/javaAC8455571063273119463/testRdd.sequences.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/javaAC8455571063273119463/testRdd.sequences.adam/_references.avro /tmp/adamTestMvnQOhk7M0/javaAC8455571063273119463/testRdd.sequences.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite1504163183565701495reads12.sam /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite6727975533740818596 /tmp/adamTestMvnQOhk7M0/TempSuite1993589231082319169.adam /tmp/adamTestMvnQOhk7M0/TempSuite1993589231082319169.adam/referenceName=13 /tmp/adamTestMvnQOhk7M0/TempSuite1993589231082319169.adam/referenceName=13/positionBin=0 /tmp/adamTestMvnQOhk7M0/TempSuite1993589231082319169.adam/referenceName=13/positionBin=0/.part-00000-6833c960-5f49-406a-a1a1-ad3db805fb13.c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite1993589231082319169.adam/referenceName=13/positionBin=0/part-00000-6833c960-5f49-406a-a1a1-ad3db805fb13.c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite1993589231082319169.adam/referenceName=2 /tmp/adamTestMvnQOhk7M0/TempSuite1993589231082319169.adam/referenceName=2/positionBin=0 /tmp/adamTestMvnQOhk7M0/TempSuite1993589231082319169.adam/referenceName=2/positionBin=0/.part-00000-6833c960-5f49-406a-a1a1-ad3db805fb13.c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite1993589231082319169.adam/referenceName=2/positionBin=0/part-00000-6833c960-5f49-406a-a1a1-ad3db805fb13.c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite1993589231082319169.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite1993589231082319169.adam/._partitionedByStartPos.crc /tmp/adamTestMvnQOhk7M0/TempSuite1993589231082319169.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite1993589231082319169.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite1993589231082319169.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite1993589231082319169.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/TempSuite1993589231082319169.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite1993589231082319169.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite1993589231082319169.adam/referenceName=1 /tmp/adamTestMvnQOhk7M0/TempSuite1993589231082319169.adam/referenceName=1/positionBin=0 /tmp/adamTestMvnQOhk7M0/TempSuite1993589231082319169.adam/referenceName=1/positionBin=0/.part-00000-6833c960-5f49-406a-a1a1-ad3db805fb13.c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite1993589231082319169.adam/referenceName=1/positionBin=0/part-00000-6833c960-5f49-406a-a1a1-ad3db805fb13.c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite1993589231082319169.adam/_header /tmp/adamTestMvnQOhk7M0/TempSuite1993589231082319169.adam/_partitionedByStartPos /tmp/adamTestMvnQOhk7M0/TempSuite6766549934000094873.adam /tmp/adamTestMvnQOhk7M0/TempSuite6766549934000094873.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite6766549934000094873.adam/part-r-00001.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite6766549934000094873.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite6766549934000094873.adam/part-r-00002.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite6766549934000094873.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite6766549934000094873.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite6766549934000094873.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite6766549934000094873.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite6766549934000094873.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite6766549934000094873.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite6766549934000094873.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite6766549934000094873.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite6766549934000094873.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite6766549934000094873.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite6766549934000094873.adam/part-r-00003.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite6766549934000094873.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite939058681373171501.adam /tmp/adamTestMvnQOhk7M0/TempSuite939058681373171501.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite939058681373171501.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite939058681373171501.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite939058681373171501.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite939058681373171501.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite939058681373171501.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite939058681373171501.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite939058681373171501.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite939058681373171501.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite939058681373171501.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite939058681373171501.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite939058681373171501.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/TempSuite939058681373171501.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/TempSuite939058681373171501.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite3043520080757391651.fa /tmp/adamTestMvnQOhk7M0/TempSuite3043520080757391651.fa/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite3043520080757391651.fa/.part-00000.crc /tmp/adamTestMvnQOhk7M0/TempSuite3043520080757391651.fa/part-00000 /tmp/adamTestMvnQOhk7M0/TempSuite3043520080757391651.fa/_SUCCESS /tmp/adamTestMvnQOhk7M0/javaAC1508470241652448371 /tmp/adamTestMvnQOhk7M0/javaAC1508470241652448371/testRdd.feature.adam /tmp/adamTestMvnQOhk7M0/javaAC1508470241652448371/testRdd.feature.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/javaAC1508470241652448371/testRdd.feature.adam/part-r-00001.gz.parquet /tmp/adamTestMvnQOhk7M0/javaAC1508470241652448371/testRdd.feature.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/javaAC1508470241652448371/testRdd.feature.adam/part-r-00002.gz.parquet /tmp/adamTestMvnQOhk7M0/javaAC1508470241652448371/testRdd.feature.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/javaAC1508470241652448371/testRdd.feature.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/javaAC1508470241652448371/testRdd.feature.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/javaAC1508470241652448371/testRdd.feature.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/javaAC1508470241652448371/testRdd.feature.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/javaAC1508470241652448371/testRdd.feature.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/javaAC1508470241652448371/testRdd.feature.adam/_metadata /tmp/adamTestMvnQOhk7M0/javaAC1508470241652448371/testRdd.feature.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/javaAC1508470241652448371/testRdd.feature.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/javaAC1508470241652448371/testRdd.feature.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/javaAC1508470241652448371/testRdd.feature.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/javaAC1508470241652448371/testRdd.feature.adam/_references.avro /tmp/adamTestMvnQOhk7M0/javaAC1508470241652448371/testRdd.feature.adam/part-r-00003.gz.parquet /tmp/adamTestMvnQOhk7M0/javaAC1508470241652448371/testRdd.feature.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite7908030024705127884.adam /tmp/adamTestMvnQOhk7M0/TempSuite7908030024705127884.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite7908030024705127884.adam/part-00000-05779018-5829-4633-96d4-8b7d06525a50-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite7908030024705127884.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite7908030024705127884.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite7908030024705127884.adam/.part-00000-05779018-5829-4633-96d4-8b7d06525a50-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite7908030024705127884.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite7908030024705127884.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite7908030024705127884.adam/_header /tmp/adamTestMvnQOhk7M0/TempSuite8208159205693642702.bed /tmp/adamTestMvnQOhk7M0/TempSuite8208159205693642702.bed/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite8208159205693642702.bed/.part-00000.crc /tmp/adamTestMvnQOhk7M0/TempSuite8208159205693642702.bed/part-00000 /tmp/adamTestMvnQOhk7M0/TempSuite8208159205693642702.bed/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite636320066132313630.fq /tmp/adamTestMvnQOhk7M0/TempSuite636320066132313630.fq/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite636320066132313630.fq/.part-00000.crc /tmp/adamTestMvnQOhk7M0/TempSuite636320066132313630.fq/part-00000 /tmp/adamTestMvnQOhk7M0/TempSuite636320066132313630.fq/_SUCCESS /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite7700585442252634755.fastq /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite7700585442252634755.fastq/.part-00001.crc /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite7700585442252634755.fastq/.part-00003.crc /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite7700585442252634755.fastq/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite7700585442252634755.fastq/part-00003 /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite7700585442252634755.fastq/.part-00000.crc /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite7700585442252634755.fastq/part-00000 /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite7700585442252634755.fastq/part-00002 /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite7700585442252634755.fastq/_SUCCESS /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite7700585442252634755.fastq/part-00001 /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite7700585442252634755.fastq/.part-00002.crc /tmp/adamTestMvnQOhk7M0/TempSuite4369432083829045835.adam /tmp/adamTestMvnQOhk7M0/TempSuite4369432083829045835.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite4369432083829045835.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite4369432083829045835.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite4369432083829045835.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite4369432083829045835.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite4369432083829045835.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite4369432083829045835.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite4369432083829045835.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite4369432083829045835.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite4369432083829045835.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite4369432083829045835.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite4369432083829045835.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/TempSuite4369432083829045835.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/TempSuite4369432083829045835.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7802463574104964759 /tmp/adamTestMvnQOhk7M0/TempSuite8945663969612270568 /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite4546341503540917577 /tmp/adamTestMvnQOhk7M0/TempSuite751327999137374332 /tmp/adamTestMvnQOhk7M0/.SliceDatasetSuite5285543531822908876.fasta.crc /tmp/adamTestMvnQOhk7M0/TempSuite4198620811673836023.adam /tmp/adamTestMvnQOhk7M0/TempSuite4198620811673836023.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite4198620811673836023.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite4198620811673836023.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite4198620811673836023.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite4198620811673836023.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite4198620811673836023.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite4198620811673836023.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite4198620811673836023.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite4198620811673836023.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/TempSuite4198620811673836023.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite4198620811673836023.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite4198620811673836023.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite4198620811673836023.adam/_header /tmp/adamTestMvnQOhk7M0/TempSuite4198620811673836023.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite1268888435421525669.bed /tmp/adamTestMvnQOhk7M0/TempSuite1268888435421525669.bed/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite1268888435421525669.bed/.part-00000.crc /tmp/adamTestMvnQOhk7M0/TempSuite1268888435421525669.bed/part-00000 /tmp/adamTestMvnQOhk7M0/TempSuite1268888435421525669.bed/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite8218442616132962661 /tmp/adamTestMvnQOhk7M0/TempSuite1604523201601465394.adam /tmp/adamTestMvnQOhk7M0/TempSuite1604523201601465394.adam/part-00000-1ebd7467-a8ea-413e-badd-8a5785cea4e0-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite1604523201601465394.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite1604523201601465394.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite1604523201601465394.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite1604523201601465394.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite1604523201601465394.adam/.part-00000-1ebd7467-a8ea-413e-badd-8a5785cea4e0-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite1604523201601465394.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/TempSuite1604523201601465394.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite1604523201601465394.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite1604523201601465394.adam/_header /tmp/adamTestMvnQOhk7M0/TempSuite5247426431927437896 /tmp/adamTestMvnQOhk7M0/TempSuite7172522845877617075 /tmp/adamTestMvnQOhk7M0/TempSuite5081387745778232147 /tmp/adamTestMvnQOhk7M0/javaAC2091552762360206380 /tmp/adamTestMvnQOhk7M0/javaAC2091552762360206380/testRdd.variant.adam /tmp/adamTestMvnQOhk7M0/javaAC2091552762360206380/testRdd.variant.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/javaAC2091552762360206380/testRdd.variant.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/javaAC2091552762360206380/testRdd.variant.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/javaAC2091552762360206380/testRdd.variant.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/javaAC2091552762360206380/testRdd.variant.adam/._header.crc /tmp/adamTestMvnQOhk7M0/javaAC2091552762360206380/testRdd.variant.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/javaAC2091552762360206380/testRdd.variant.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/javaAC2091552762360206380/testRdd.variant.adam/_metadata /tmp/adamTestMvnQOhk7M0/javaAC2091552762360206380/testRdd.variant.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/javaAC2091552762360206380/testRdd.variant.adam/_references.avro /tmp/adamTestMvnQOhk7M0/javaAC2091552762360206380/testRdd.variant.adam/_header /tmp/adamTestMvnQOhk7M0/javaAC2091552762360206380/testRdd.variant.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite4501627269157522769 /tmp/adamTestMvnQOhk7M0/TempSuite2290966841537434597 /tmp/adamTestMvnQOhk7M0/4687835069351028503 /tmp/adamTestMvnQOhk7M0/4687835069351028503/unordered.adam /tmp/adamTestMvnQOhk7M0/4687835069351028503/unordered.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/4687835069351028503/unordered.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/4687835069351028503/unordered.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/4687835069351028503/unordered.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/4687835069351028503/unordered.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/4687835069351028503/unordered.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/4687835069351028503/unordered.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/4687835069351028503/unordered.adam/_metadata /tmp/adamTestMvnQOhk7M0/4687835069351028503/unordered.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/4687835069351028503/unordered.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/4687835069351028503/unordered.adam/_references.avro /tmp/adamTestMvnQOhk7M0/4687835069351028503/unordered.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/4687835069351028503/unordered.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/4687835069351028503/unordered.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7648784047023905434 /tmp/adamTestMvnQOhk7M0/TempSuite7637014500878126979.adam /tmp/adamTestMvnQOhk7M0/TempSuite7637014500878126979.adam/referenceName=2 /tmp/adamTestMvnQOhk7M0/TempSuite7637014500878126979.adam/referenceName=2/positionBin=189 /tmp/adamTestMvnQOhk7M0/TempSuite7637014500878126979.adam/referenceName=2/positionBin=189/part-00000-eb0c13a7-7459-431a-a7fa-b55d9d077fd4.c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite7637014500878126979.adam/referenceName=2/positionBin=189/.part-00000-eb0c13a7-7459-431a-a7fa-b55d9d077fd4.c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite7637014500878126979.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite7637014500878126979.adam/._partitionedByStartPos.crc /tmp/adamTestMvnQOhk7M0/TempSuite7637014500878126979.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite7637014500878126979.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite7637014500878126979.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite7637014500878126979.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite7637014500878126979.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite7637014500878126979.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/TempSuite7637014500878126979.adam/referenceName=1 /tmp/adamTestMvnQOhk7M0/TempSuite7637014500878126979.adam/referenceName=1/positionBin=26 /tmp/adamTestMvnQOhk7M0/TempSuite7637014500878126979.adam/referenceName=1/positionBin=26/part-00000-eb0c13a7-7459-431a-a7fa-b55d9d077fd4.c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite7637014500878126979.adam/referenceName=1/positionBin=26/.part-00000-eb0c13a7-7459-431a-a7fa-b55d9d077fd4.c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite7637014500878126979.adam/referenceName=1/positionBin=240 /tmp/adamTestMvnQOhk7M0/TempSuite7637014500878126979.adam/referenceName=1/positionBin=240/part-00000-eb0c13a7-7459-431a-a7fa-b55d9d077fd4.c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite7637014500878126979.adam/referenceName=1/positionBin=240/.part-00000-eb0c13a7-7459-431a-a7fa-b55d9d077fd4.c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite7637014500878126979.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/TempSuite7637014500878126979.adam/_partitionedByStartPos /tmp/adamTestMvnQOhk7M0/TempSuite773822798382313410.bed /tmp/adamTestMvnQOhk7M0/TempSuite773822798382313410.bed/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite773822798382313410.bed/.part-00000.crc /tmp/adamTestMvnQOhk7M0/TempSuite773822798382313410.bed/part-00000 /tmp/adamTestMvnQOhk7M0/TempSuite773822798382313410.bed/_SUCCESS /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6425607045157430703.gtf /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6425607045157430703.gtf/.part-00001.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6425607045157430703.gtf/.part-00003.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6425607045157430703.gtf/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6425607045157430703.gtf/part-00003 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6425607045157430703.gtf/.part-00000.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6425607045157430703.gtf/part-00000 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6425607045157430703.gtf/part-00002 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6425607045157430703.gtf/_SUCCESS /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6425607045157430703.gtf/part-00001 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6425607045157430703.gtf/.part-00002.crc /tmp/adamTestMvnQOhk7M0/TempSuite2692701405493723840 /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite300482163067751089.adam /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite300482163067751089.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite300482163067751089.adam/part-r-00001.gz.parquet /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite300482163067751089.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite300482163067751089.adam/part-r-00002.gz.parquet /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite300482163067751089.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite300482163067751089.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite300482163067751089.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite300482163067751089.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite300482163067751089.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite300482163067751089.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite300482163067751089.adam/_metadata /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite300482163067751089.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite300482163067751089.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite300482163067751089.adam/_references.avro /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite300482163067751089.adam/part-r-00003.gz.parquet /tmp/adamTestMvnQOhk7M0/ReadDatasetSuite300482163067751089.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite4657298941472001864 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6039081555877286104.narrowPeak /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6039081555877286104.narrowPeak/.part-00001.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6039081555877286104.narrowPeak/.part-00003.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6039081555877286104.narrowPeak/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6039081555877286104.narrowPeak/part-00003 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6039081555877286104.narrowPeak/.part-00000.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6039081555877286104.narrowPeak/part-00000 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6039081555877286104.narrowPeak/part-00002 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6039081555877286104.narrowPeak/_SUCCESS /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6039081555877286104.narrowPeak/part-00001 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6039081555877286104.narrowPeak/.part-00002.crc /tmp/adamTestMvnQOhk7M0/TempSuite6655236946634477734.bed /tmp/adamTestMvnQOhk7M0/TempSuite6655236946634477734.bed/.part-00001.crc /tmp/adamTestMvnQOhk7M0/TempSuite6655236946634477734.bed/.part-00003.crc /tmp/adamTestMvnQOhk7M0/TempSuite6655236946634477734.bed/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite6655236946634477734.bed/part-00003 /tmp/adamTestMvnQOhk7M0/TempSuite6655236946634477734.bed/.part-00000.crc /tmp/adamTestMvnQOhk7M0/TempSuite6655236946634477734.bed/part-00000 /tmp/adamTestMvnQOhk7M0/TempSuite6655236946634477734.bed/part-00002 /tmp/adamTestMvnQOhk7M0/TempSuite6655236946634477734.bed/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite6655236946634477734.bed/part-00001 /tmp/adamTestMvnQOhk7M0/TempSuite6655236946634477734.bed/.part-00002.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite564391810597379666 /tmp/adamTestMvnQOhk7M0/TempSuite4045586857734678432_1.fq /tmp/adamTestMvnQOhk7M0/TempSuite4045586857734678432_1.fq/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite4045586857734678432_1.fq/.part-00000.crc /tmp/adamTestMvnQOhk7M0/TempSuite4045586857734678432_1.fq/part-00000 /tmp/adamTestMvnQOhk7M0/TempSuite4045586857734678432_1.fq/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite2434035100174209233.bed /tmp/adamTestMvnQOhk7M0/TempSuite2434035100174209233.bed/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite2434035100174209233.bed/.part-00000.crc /tmp/adamTestMvnQOhk7M0/TempSuite2434035100174209233.bed/part-00000 /tmp/adamTestMvnQOhk7M0/TempSuite2434035100174209233.bed/_SUCCESS /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite4699885440630420301 /tmp/adamTestMvnQOhk7M0/TempSuite4089097348575138033.adam /tmp/adamTestMvnQOhk7M0/TempSuite4089097348575138033.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite4089097348575138033.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite4089097348575138033.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite4089097348575138033.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite4089097348575138033.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite4089097348575138033.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite4089097348575138033.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite4089097348575138033.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite4089097348575138033.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite4089097348575138033.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite4089097348575138033.adam/_header /tmp/adamTestMvnQOhk7M0/TempSuite4089097348575138033.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite116976970084876541.adam /tmp/adamTestMvnQOhk7M0/TempSuite116976970084876541.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite116976970084876541.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite116976970084876541.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite116976970084876541.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite116976970084876541.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite116976970084876541.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite116976970084876541.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite116976970084876541.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite116976970084876541.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite116976970084876541.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite116976970084876541.adam/_header /tmp/adamTestMvnQOhk7M0/TempSuite116976970084876541.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/unordered.sam1481561245094845305.sam /tmp/adamTestMvnQOhk7M0/TempSuite6819624415790837819 /tmp/adamTestMvnQOhk7M0/TempSuite5076330741438501339.adam /tmp/adamTestMvnQOhk7M0/TempSuite5076330741438501339.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite5076330741438501339.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite5076330741438501339.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite5076330741438501339.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite5076330741438501339.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite5076330741438501339.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite5076330741438501339.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite5076330741438501339.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite5076330741438501339.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite5076330741438501339.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite5076330741438501339.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite5076330741438501339.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/TempSuite5076330741438501339.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/TempSuite5076330741438501339.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6546856861100771943 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite4430761566496285368 /tmp/adamTestMvnQOhk7M0/trinity.fa5270864143170883758.fa /tmp/adamTestMvnQOhk7M0/2634709349596586651 /tmp/adamTestMvnQOhk7M0/2634709349596586651/.unordered.bam.crc /tmp/adamTestMvnQOhk7M0/2634709349596586651/unordered.bam /tmp/adamTestMvnQOhk7M0/TempSuite244904310021125809.adam /tmp/adamTestMvnQOhk7M0/TempSuite244904310021125809.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite244904310021125809.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite244904310021125809.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite244904310021125809.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite244904310021125809.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite244904310021125809.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite244904310021125809.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite244904310021125809.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite244904310021125809.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite244904310021125809.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite244904310021125809.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite244904310021125809.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/TempSuite244904310021125809.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/TempSuite244904310021125809.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite6655236946634477734 /tmp/adamTestMvnQOhk7M0/TempSuite5596691951353999591.adam /tmp/adamTestMvnQOhk7M0/TempSuite5596691951353999591.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite5596691951353999591.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite5596691951353999591.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite5596691951353999591.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite5596691951353999591.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite5596691951353999591.adam/.part-00000-6aac7077-fead-4fd0-b0ad-d3f13ffe5e50-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite5596691951353999591.adam/_header /tmp/adamTestMvnQOhk7M0/TempSuite5596691951353999591.adam/part-00000-6aac7077-fead-4fd0-b0ad-d3f13ffe5e50-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/unsorted.sam3244456487228611571.sam /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite7130771922269863422 /tmp/adamTestMvnQOhk7M0/TempSuite9061277704953891414 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite8033289390298889515 /tmp/adamTestMvnQOhk7M0/reads122227273852169550076 /tmp/adamTestMvnQOhk7M0/reads122227273852169550076/reads12.fq /tmp/adamTestMvnQOhk7M0/reads122227273852169550076/reads12.fq/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/reads122227273852169550076/reads12.fq/.part-00000.crc /tmp/adamTestMvnQOhk7M0/reads122227273852169550076/reads12.fq/part-00000 /tmp/adamTestMvnQOhk7M0/reads122227273852169550076/reads12.fq/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite3021583951930994118 /tmp/adamTestMvnQOhk7M0/TempSuite7345565605839149473.bed /tmp/adamTestMvnQOhk7M0/TempSuite7345565605839149473.bed/.part-00001.crc /tmp/adamTestMvnQOhk7M0/TempSuite7345565605839149473.bed/.part-00003.crc /tmp/adamTestMvnQOhk7M0/TempSuite7345565605839149473.bed/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite7345565605839149473.bed/part-00003 /tmp/adamTestMvnQOhk7M0/TempSuite7345565605839149473.bed/.part-00000.crc /tmp/adamTestMvnQOhk7M0/TempSuite7345565605839149473.bed/part-00000 /tmp/adamTestMvnQOhk7M0/TempSuite7345565605839149473.bed/part-00002 /tmp/adamTestMvnQOhk7M0/TempSuite7345565605839149473.bed/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite7345565605839149473.bed/part-00001 /tmp/adamTestMvnQOhk7M0/TempSuite7345565605839149473.bed/.part-00002.crc /tmp/adamTestMvnQOhk7M0/TempSuite3099941539739144919 /tmp/adamTestMvnQOhk7M0/3554925652736646545 /tmp/adamTestMvnQOhk7M0/3554925652736646545/.unordered.bam.crc /tmp/adamTestMvnQOhk7M0/3554925652736646545/unordered.bam /tmp/adamTestMvnQOhk7M0/1425831589626270698 /tmp/adamTestMvnQOhk7M0/1425831589626270698/sorted.lex.vcf /tmp/adamTestMvnQOhk7M0/1425831589626270698/.sorted.lex.vcf.crc /tmp/adamTestMvnQOhk7M0/ordered.sam7685305233567312213.sam /tmp/adamTestMvnQOhk7M0/TempSuite5495298698570852390.adam /tmp/adamTestMvnQOhk7M0/TempSuite5495298698570852390.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite5495298698570852390.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite5495298698570852390.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite5495298698570852390.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite5495298698570852390.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite5495298698570852390.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite5495298698570852390.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite5495298698570852390.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite5495298698570852390.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite5495298698570852390.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite5495298698570852390.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite5495298698570852390.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/TempSuite5495298698570852390.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/TempSuite5495298698570852390.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite4954964087334629169 /tmp/adamTestMvnQOhk7M0/TempSuite6512300623263688118.adam /tmp/adamTestMvnQOhk7M0/TempSuite6512300623263688118.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite6512300623263688118.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite6512300623263688118.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite6512300623263688118.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite6512300623263688118.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite6512300623263688118.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite6512300623263688118.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite6512300623263688118.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite6512300623263688118.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite6512300623263688118.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite6512300623263688118.adam/_header /tmp/adamTestMvnQOhk7M0/TempSuite6512300623263688118.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/random.vcf2173068594493872790.vcf /tmp/adamTestMvnQOhk7M0/.SequenceDatasetSuite5333387433077533514.fasta.crc /tmp/adamTestMvnQOhk7M0/TempSuite6596809572088763996.adam /tmp/adamTestMvnQOhk7M0/TempSuite6596809572088763996.adam/part-00005-c9416164-0f74-4175-ab28-a8ffef1c73bb-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite6596809572088763996.adam/.part-00005-c9416164-0f74-4175-ab28-a8ffef1c73bb-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite6596809572088763996.adam/.part-00000-c9416164-0f74-4175-ab28-a8ffef1c73bb-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite6596809572088763996.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite6596809572088763996.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite6596809572088763996.adam/.part-00003-c9416164-0f74-4175-ab28-a8ffef1c73bb-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite6596809572088763996.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite6596809572088763996.adam/part-00003-c9416164-0f74-4175-ab28-a8ffef1c73bb-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite6596809572088763996.adam/part-00000-c9416164-0f74-4175-ab28-a8ffef1c73bb-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite6596809572088763996.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/TempSuite6596809572088763996.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite6596809572088763996.adam/_references.avro /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite3932890834232944806.narrowPeak /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite3932890834232944806.narrowPeak/.part-00001.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite3932890834232944806.narrowPeak/.part-00003.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite3932890834232944806.narrowPeak/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite3932890834232944806.narrowPeak/part-00003 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite3932890834232944806.narrowPeak/.part-00000.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite3932890834232944806.narrowPeak/part-00000 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite3932890834232944806.narrowPeak/part-00002 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite3932890834232944806.narrowPeak/_SUCCESS /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite3932890834232944806.narrowPeak/part-00001 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite3932890834232944806.narrowPeak/.part-00002.crc /tmp/adamTestMvnQOhk7M0/TempSuite2434035100174209233 /tmp/adamTestMvnQOhk7M0/TempSuite4535659490132968606 /tmp/adamTestMvnQOhk7M0/TempSuite4102606880640382086.adam /tmp/adamTestMvnQOhk7M0/TempSuite4102606880640382086.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite4102606880640382086.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite4102606880640382086.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite4102606880640382086.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite4102606880640382086.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite4102606880640382086.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite4102606880640382086.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite4102606880640382086.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite4102606880640382086.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite4102606880640382086.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite4102606880640382086.adam/_header /tmp/adamTestMvnQOhk7M0/TempSuite4102606880640382086.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite4522324891747851041 /tmp/adamTestMvnQOhk7M0/TempSuite8437652266036799764.adam /tmp/adamTestMvnQOhk7M0/TempSuite8437652266036799764.adam/referenceName=13 /tmp/adamTestMvnQOhk7M0/TempSuite8437652266036799764.adam/referenceName=13/positionBin=0 /tmp/adamTestMvnQOhk7M0/TempSuite8437652266036799764.adam/referenceName=13/positionBin=0/part-00000-d1968fe0-bad5-48b2-a8c1-b7a7a081cb5a.c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite8437652266036799764.adam/referenceName=13/positionBin=0/.part-00000-d1968fe0-bad5-48b2-a8c1-b7a7a081cb5a.c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite8437652266036799764.adam/referenceName=2 /tmp/adamTestMvnQOhk7M0/TempSuite8437652266036799764.adam/referenceName=2/positionBin=0 /tmp/adamTestMvnQOhk7M0/TempSuite8437652266036799764.adam/referenceName=2/positionBin=0/part-00000-d1968fe0-bad5-48b2-a8c1-b7a7a081cb5a.c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite8437652266036799764.adam/referenceName=2/positionBin=0/.part-00000-d1968fe0-bad5-48b2-a8c1-b7a7a081cb5a.c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite8437652266036799764.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite8437652266036799764.adam/._partitionedByStartPos.crc /tmp/adamTestMvnQOhk7M0/TempSuite8437652266036799764.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite8437652266036799764.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite8437652266036799764.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite8437652266036799764.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/TempSuite8437652266036799764.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite8437652266036799764.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite8437652266036799764.adam/referenceName=1 /tmp/adamTestMvnQOhk7M0/TempSuite8437652266036799764.adam/referenceName=1/positionBin=0 /tmp/adamTestMvnQOhk7M0/TempSuite8437652266036799764.adam/referenceName=1/positionBin=0/part-00000-d1968fe0-bad5-48b2-a8c1-b7a7a081cb5a.c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite8437652266036799764.adam/referenceName=1/positionBin=0/.part-00000-d1968fe0-bad5-48b2-a8c1-b7a7a081cb5a.c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite8437652266036799764.adam/_header /tmp/adamTestMvnQOhk7M0/TempSuite8437652266036799764.adam/_partitionedByStartPos /tmp/adamTestMvnQOhk7M0/TempSuite7965390347362435888 /tmp/adamTestMvnQOhk7M0/TempSuite2564001659488573835.adam /tmp/adamTestMvnQOhk7M0/TempSuite2564001659488573835.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite2564001659488573835.adam/._partitionedByStartPos.crc /tmp/adamTestMvnQOhk7M0/TempSuite2564001659488573835.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite2564001659488573835.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite2564001659488573835.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite2564001659488573835.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/TempSuite2564001659488573835.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite2564001659488573835.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite2564001659488573835.adam/referenceName=1 /tmp/adamTestMvnQOhk7M0/TempSuite2564001659488573835.adam/referenceName=1/positionBin=0 /tmp/adamTestMvnQOhk7M0/TempSuite2564001659488573835.adam/referenceName=1/positionBin=0/part-00000-6d6ae633-7712-419e-b834-5d072067896e.c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite2564001659488573835.adam/referenceName=1/positionBin=0/.part-00000-6d6ae633-7712-419e-b834-5d072067896e.c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite2564001659488573835.adam/_header /tmp/adamTestMvnQOhk7M0/TempSuite2564001659488573835.adam/_partitionedByStartPos /tmp/adamTestMvnQOhk7M0/TempSuite8708531771553439607 /tmp/adamTestMvnQOhk7M0/TempSuite3855121510644068841 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite2481410134186639951.bed /tmp/adamTestMvnQOhk7M0/5742081843556827022 /tmp/adamTestMvnQOhk7M0/5742081843556827022/out.bam /tmp/adamTestMvnQOhk7M0/5742081843556827022/out.bam_head /tmp/adamTestMvnQOhk7M0/5742081843556827022/.out.bam.crc /tmp/adamTestMvnQOhk7M0/5742081843556827022/out.bam_tail /tmp/adamTestMvnQOhk7M0/5742081843556827022/out.bam_tail/.part-r-00002.bam.crc /tmp/adamTestMvnQOhk7M0/5742081843556827022/out.bam_tail/part-r-00002.bam /tmp/adamTestMvnQOhk7M0/5742081843556827022/out.bam_tail/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/5742081843556827022/out.bam_tail/part-r-00001.bam /tmp/adamTestMvnQOhk7M0/5742081843556827022/out.bam_tail/_SUCCESS /tmp/adamTestMvnQOhk7M0/5742081843556827022/out.bam_tail/part-r-00003.bam /tmp/adamTestMvnQOhk7M0/5742081843556827022/out.bam_tail/.part-r-00003.bam.crc /tmp/adamTestMvnQOhk7M0/5742081843556827022/out.bam_tail/.part-r-00000.bam.crc /tmp/adamTestMvnQOhk7M0/5742081843556827022/out.bam_tail/part-r-00000.bam /tmp/adamTestMvnQOhk7M0/5742081843556827022/out.bam_tail/.part-r-00001.bam.crc /tmp/adamTestMvnQOhk7M0/5742081843556827022/.out.bam_head.crc /tmp/adamTestMvnQOhk7M0/TempSuite76178969003945197 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7094146840554147110 /tmp/adamTestMvnQOhk7M0/TempSuite1769876729655942208 /tmp/adamTestMvnQOhk7M0/TempSuite1710024179811758518.adam /tmp/adamTestMvnQOhk7M0/TempSuite1710024179811758518.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite1710024179811758518.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite1710024179811758518.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite1710024179811758518.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite1710024179811758518.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite1710024179811758518.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite1710024179811758518.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite1710024179811758518.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite1710024179811758518.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite1710024179811758518.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite6934225065689741269.adam /tmp/adamTestMvnQOhk7M0/TempSuite6934225065689741269.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite6934225065689741269.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite6934225065689741269.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite6934225065689741269.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite6934225065689741269.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite6934225065689741269.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite6934225065689741269.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite6934225065689741269.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite6934225065689741269.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite6934225065689741269.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite6934225065689741269.adam/_header /tmp/adamTestMvnQOhk7M0/TempSuite6934225065689741269.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite4997994183794208044.sam /tmp/adamTestMvnQOhk7M0/TempSuite5455814344482665078.bam /tmp/adamTestMvnQOhk7M0/javaAC9051747808987438788 /tmp/adamTestMvnQOhk7M0/javaAC9051747808987438788/testRdd.read.adam /tmp/adamTestMvnQOhk7M0/javaAC9051747808987438788/testRdd.read.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/javaAC9051747808987438788/testRdd.read.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/javaAC9051747808987438788/testRdd.read.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/javaAC9051747808987438788/testRdd.read.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/javaAC9051747808987438788/testRdd.read.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/javaAC9051747808987438788/testRdd.read.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/javaAC9051747808987438788/testRdd.read.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/javaAC9051747808987438788/testRdd.read.adam/_metadata /tmp/adamTestMvnQOhk7M0/javaAC9051747808987438788/testRdd.read.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/javaAC9051747808987438788/testRdd.read.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/javaAC9051747808987438788/testRdd.read.adam/_references.avro /tmp/adamTestMvnQOhk7M0/javaAC9051747808987438788/testRdd.read.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/javaAC9051747808987438788/testRdd.read.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/javaAC9051747808987438788/testRdd.read.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite5333387433077533514 /tmp/adamTestMvnQOhk7M0/TempSuite9056874961567193877.adam /tmp/adamTestMvnQOhk7M0/TempSuite9056874961567193877.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite9056874961567193877.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite9056874961567193877.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite9056874961567193877.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite9056874961567193877.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite9056874961567193877.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite9056874961567193877.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite9056874961567193877.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite9056874961567193877.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite9056874961567193877.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite9056874961567193877.adam/_header /tmp/adamTestMvnQOhk7M0/TempSuite9056874961567193877.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6425607045157430703 /tmp/adamTestMvnQOhk7M0/TempSuite2800241236775353449 /tmp/adamTestMvnQOhk7M0/TempSuite4209831601909380218 /tmp/adamTestMvnQOhk7M0/javaAC5797402818328064604 /tmp/adamTestMvnQOhk7M0/javaAC5797402818328064604/testRdd.coverage.adam /tmp/adamTestMvnQOhk7M0/javaAC5797402818328064604/testRdd.coverage.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/javaAC5797402818328064604/testRdd.coverage.adam/part-r-00001.gz.parquet /tmp/adamTestMvnQOhk7M0/javaAC5797402818328064604/testRdd.coverage.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/javaAC5797402818328064604/testRdd.coverage.adam/part-r-00002.gz.parquet /tmp/adamTestMvnQOhk7M0/javaAC5797402818328064604/testRdd.coverage.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/javaAC5797402818328064604/testRdd.coverage.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/javaAC5797402818328064604/testRdd.coverage.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/javaAC5797402818328064604/testRdd.coverage.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/javaAC5797402818328064604/testRdd.coverage.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/javaAC5797402818328064604/testRdd.coverage.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/javaAC5797402818328064604/testRdd.coverage.adam/_metadata /tmp/adamTestMvnQOhk7M0/javaAC5797402818328064604/testRdd.coverage.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/javaAC5797402818328064604/testRdd.coverage.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/javaAC5797402818328064604/testRdd.coverage.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/javaAC5797402818328064604/testRdd.coverage.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/javaAC5797402818328064604/testRdd.coverage.adam/_references.avro /tmp/adamTestMvnQOhk7M0/javaAC5797402818328064604/testRdd.coverage.adam/part-r-00003.gz.parquet /tmp/adamTestMvnQOhk7M0/javaAC5797402818328064604/testRdd.coverage.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite2179614830801599769.adam /tmp/adamTestMvnQOhk7M0/TempSuite2179614830801599769.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite2179614830801599769.adam/part-r-00001.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite2179614830801599769.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite2179614830801599769.adam/part-r-00002.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite2179614830801599769.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite2179614830801599769.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite2179614830801599769.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite2179614830801599769.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite2179614830801599769.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite2179614830801599769.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite2179614830801599769.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite2179614830801599769.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite2179614830801599769.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite2179614830801599769.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite2179614830801599769.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite2179614830801599769.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite2179614830801599769.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/TempSuite2179614830801599769.adam/part-r-00003.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite2179614830801599769.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/TempSuite2179614830801599769.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite7382405344291635844.adam /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite7382405344291635844.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite7382405344291635844.adam/part-r-00001.gz.parquet /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite7382405344291635844.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite7382405344291635844.adam/part-r-00002.gz.parquet /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite7382405344291635844.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite7382405344291635844.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite7382405344291635844.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite7382405344291635844.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite7382405344291635844.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite7382405344291635844.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite7382405344291635844.adam/_metadata /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite7382405344291635844.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite7382405344291635844.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite7382405344291635844.adam/_references.avro /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite7382405344291635844.adam/part-r-00003.gz.parquet /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite7382405344291635844.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite5169682830458679615.adam /tmp/adamTestMvnQOhk7M0/TempSuite5169682830458679615.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite5169682830458679615.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite5169682830458679615.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite5169682830458679615.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite5169682830458679615.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite5169682830458679615.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite5169682830458679615.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite5169682830458679615.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite5169682830458679615.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite5169682830458679615.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite5169682830458679615.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite5169682830458679615.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/TempSuite5169682830458679615.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/TempSuite5169682830458679615.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite6870932721488515441 /tmp/adamTestMvnQOhk7M0/TempSuite3021583951930994118.fq /tmp/adamTestMvnQOhk7M0/TempSuite3021583951930994118.fq/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite3021583951930994118.fq/.part-00000.crc /tmp/adamTestMvnQOhk7M0/TempSuite3021583951930994118.fq/part-00000 /tmp/adamTestMvnQOhk7M0/TempSuite3021583951930994118.fq/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite4865171277806407807 /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite7735815009535088760 /tmp/adamTestMvnQOhk7M0/TempSuite8469691793259068358_1.fq /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite1884388006411969275 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite5627215883746333881.bed /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite5627215883746333881.bed/.part-00001.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite5627215883746333881.bed/.part-00003.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite5627215883746333881.bed/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite5627215883746333881.bed/part-00003 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite5627215883746333881.bed/.part-00000.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite5627215883746333881.bed/part-00000 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite5627215883746333881.bed/part-00002 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite5627215883746333881.bed/_SUCCESS /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite5627215883746333881.bed/part-00001 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite5627215883746333881.bed/.part-00002.crc /tmp/adamTestMvnQOhk7M0/TempSuite1339496404453287587 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite4699885440630420301.bed /tmp/adamTestMvnQOhk7M0/TempSuite6913278763024290780.bed /tmp/adamTestMvnQOhk7M0/TempSuite6913278763024290780.bed/.part-00001.crc /tmp/adamTestMvnQOhk7M0/TempSuite6913278763024290780.bed/.part-00003.crc /tmp/adamTestMvnQOhk7M0/TempSuite6913278763024290780.bed/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite6913278763024290780.bed/part-00003 /tmp/adamTestMvnQOhk7M0/TempSuite6913278763024290780.bed/.part-00000.crc /tmp/adamTestMvnQOhk7M0/TempSuite6913278763024290780.bed/part-00000 /tmp/adamTestMvnQOhk7M0/TempSuite6913278763024290780.bed/part-00002 /tmp/adamTestMvnQOhk7M0/TempSuite6913278763024290780.bed/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite6913278763024290780.bed/part-00001 /tmp/adamTestMvnQOhk7M0/TempSuite6913278763024290780.bed/.part-00002.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite8856082189248920606.narrowPeak /tmp/adamTestMvnQOhk7M0/TempSuite1466260386800183741 /tmp/adamTestMvnQOhk7M0/TempSuite884867216052855617 /tmp/adamTestMvnQOhk7M0/trinity.fa5130900867468074101.fa /tmp/adamTestMvnQOhk7M0/TempSuite2154514311842150342 /tmp/adamTestMvnQOhk7M0/trinity.fa2501796584649374818.fa /tmp/adamTestMvnQOhk7M0/.TempSuite896210047620218867_1.fq.crc /tmp/adamTestMvnQOhk7M0/TempSuite8568180833896685013 /tmp/adamTestMvnQOhk7M0/6961797530587120458 /tmp/adamTestMvnQOhk7M0/6961797530587120458/variants.lex.adam /tmp/adamTestMvnQOhk7M0/6961797530587120458/variants.lex.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/6961797530587120458/variants.lex.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/6961797530587120458/variants.lex.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/6961797530587120458/variants.lex.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/6961797530587120458/variants.lex.adam/._header.crc /tmp/adamTestMvnQOhk7M0/6961797530587120458/variants.lex.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/6961797530587120458/variants.lex.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/6961797530587120458/variants.lex.adam/_metadata /tmp/adamTestMvnQOhk7M0/6961797530587120458/variants.lex.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/6961797530587120458/variants.lex.adam/_references.avro /tmp/adamTestMvnQOhk7M0/6961797530587120458/variants.lex.adam/_header /tmp/adamTestMvnQOhk7M0/6961797530587120458/variants.lex.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite5552170470212396620.adam /tmp/adamTestMvnQOhk7M0/TempSuite5552170470212396620.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite5552170470212396620.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite5552170470212396620.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite5552170470212396620.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite5552170470212396620.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite5552170470212396620.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite5552170470212396620.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite5552170470212396620.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite5552170470212396620.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite5552170470212396620.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite5552170470212396620.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite5552170470212396620.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/TempSuite5552170470212396620.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/TempSuite5552170470212396620.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite5131648046903115676.adam /tmp/adamTestMvnQOhk7M0/TempSuite5131648046903115676.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite5131648046903115676.adam/.part-00000-a87e2843-4578-4aa7-8bf2-cb3763f2ff03-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite5131648046903115676.adam/part-00000-a87e2843-4578-4aa7-8bf2-cb3763f2ff03-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite5131648046903115676.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite5131648046903115676.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite5131648046903115676.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite5131648046903115676.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/TempSuite5131648046903115676.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite5131648046903115676.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite5131648046903115676.adam/_header /tmp/adamTestMvnQOhk7M0/TempSuite884867216052855617.adam /tmp/adamTestMvnQOhk7M0/TempSuite884867216052855617.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite884867216052855617.adam/.part-00002-b96762be-60f0-49c5-8bd9-fcb67177a3d1-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite884867216052855617.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite884867216052855617.adam/part-00002-b96762be-60f0-49c5-8bd9-fcb67177a3d1-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite884867216052855617.adam/.part-00001-b96762be-60f0-49c5-8bd9-fcb67177a3d1-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite884867216052855617.adam/part-00001-b96762be-60f0-49c5-8bd9-fcb67177a3d1-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite884867216052855617.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite884867216052855617.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite884867216052855617.adam/.part-00000-b96762be-60f0-49c5-8bd9-fcb67177a3d1-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite884867216052855617.adam/part-00000-b96762be-60f0-49c5-8bd9-fcb67177a3d1-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/unordered.sam8202037584015127865.sam /tmp/adamTestMvnQOhk7M0/TempSuite8505169609905511667.adam /tmp/adamTestMvnQOhk7M0/TempSuite8505169609905511667.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite8505169609905511667.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite8505169609905511667.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite8505169609905511667.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite8505169609905511667.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite8505169609905511667.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite8505169609905511667.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite8505169609905511667.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite8505169609905511667.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite8505169609905511667.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite8505169609905511667.adam/_header /tmp/adamTestMvnQOhk7M0/TempSuite8505169609905511667.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite1375788801999831908 /tmp/adamTestMvnQOhk7M0/TempSuite6259197783774462100.fq /tmp/adamTestMvnQOhk7M0/TempSuite6259197783774462100.fq/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite6259197783774462100.fq/.part-00000.crc /tmp/adamTestMvnQOhk7M0/TempSuite6259197783774462100.fq/part-00000 /tmp/adamTestMvnQOhk7M0/TempSuite6259197783774462100.fq/_SUCCESS /tmp/adamTestMvnQOhk7M0/small.sam8338110232517371887.sam /tmp/adamTestMvnQOhk7M0/TempSuite1871744865640054700.bed /tmp/adamTestMvnQOhk7M0/TempSuite1871744865640054700.bed/.part-00001.crc /tmp/adamTestMvnQOhk7M0/TempSuite1871744865640054700.bed/.part-00003.crc /tmp/adamTestMvnQOhk7M0/TempSuite1871744865640054700.bed/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite1871744865640054700.bed/part-00003 /tmp/adamTestMvnQOhk7M0/TempSuite1871744865640054700.bed/.part-00000.crc /tmp/adamTestMvnQOhk7M0/TempSuite1871744865640054700.bed/part-00000 /tmp/adamTestMvnQOhk7M0/TempSuite1871744865640054700.bed/part-00002 /tmp/adamTestMvnQOhk7M0/TempSuite1871744865640054700.bed/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite1871744865640054700.bed/part-00001 /tmp/adamTestMvnQOhk7M0/TempSuite1871744865640054700.bed/.part-00002.crc /tmp/adamTestMvnQOhk7M0/sample_coverage.bed4261481923577775797.bed /tmp/adamTestMvnQOhk7M0/TempSuite7285942702965857757 /tmp/adamTestMvnQOhk7M0/TempSuite1350942631896717198 /tmp/adamTestMvnQOhk7M0/TempSuite7423657920593947271 /tmp/adamTestMvnQOhk7M0/random.vcf9099345617239942909.vcf /tmp/adamTestMvnQOhk7M0/unordered.sam4700825793824998243.sam /tmp/adamTestMvnQOhk7M0/TempSuite6712287935908503135 /tmp/adamTestMvnQOhk7M0/TempSuite1387751269677908721 /tmp/adamTestMvnQOhk7M0/TempSuite5316005554648479138 /tmp/adamTestMvnQOhk7M0/TempSuite1114643745140349474.fa /tmp/adamTestMvnQOhk7M0/TempSuite1114643745140349474.fa/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite1114643745140349474.fa/.part-00000.crc /tmp/adamTestMvnQOhk7M0/TempSuite1114643745140349474.fa/part-00000 /tmp/adamTestMvnQOhk7M0/TempSuite1114643745140349474.fa/_SUCCESS /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7698247963935593984 /tmp/adamTestMvnQOhk7M0/TempSuite6098834606207460011 /tmp/adamTestMvnQOhk7M0/noqual8748008579896702821 /tmp/adamTestMvnQOhk7M0/noqual8748008579896702821/noqualB.fastq /tmp/adamTestMvnQOhk7M0/noqual8748008579896702821/noqualB.fastq/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/noqual8748008579896702821/noqualB.fastq/.part-00000.crc /tmp/adamTestMvnQOhk7M0/noqual8748008579896702821/noqualB.fastq/part-00000 /tmp/adamTestMvnQOhk7M0/noqual8748008579896702821/noqualB.fastq/_SUCCESS /tmp/adamTestMvnQOhk7M0/noqual8748008579896702821/noqualA.sam /tmp/adamTestMvnQOhk7M0/noqual8748008579896702821/noqualA.sam/part-r-00000.sam /tmp/adamTestMvnQOhk7M0/noqual8748008579896702821/noqualA.sam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/noqual8748008579896702821/noqualA.sam/_SUCCESS /tmp/adamTestMvnQOhk7M0/noqual8748008579896702821/noqualA.sam/.part-r-00000.sam.crc /tmp/adamTestMvnQOhk7M0/TempSuite6560597399589935739.bed /tmp/adamTestMvnQOhk7M0/TempSuite6560597399589935739.bed/.part-00001.crc /tmp/adamTestMvnQOhk7M0/TempSuite6560597399589935739.bed/.part-00003.crc /tmp/adamTestMvnQOhk7M0/TempSuite6560597399589935739.bed/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite6560597399589935739.bed/part-00003 /tmp/adamTestMvnQOhk7M0/TempSuite6560597399589935739.bed/.part-00000.crc /tmp/adamTestMvnQOhk7M0/TempSuite6560597399589935739.bed/part-00000 /tmp/adamTestMvnQOhk7M0/TempSuite6560597399589935739.bed/part-00002 /tmp/adamTestMvnQOhk7M0/TempSuite6560597399589935739.bed/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite6560597399589935739.bed/part-00001 /tmp/adamTestMvnQOhk7M0/TempSuite6560597399589935739.bed/.part-00002.crc /tmp/adamTestMvnQOhk7M0/TempSuite1114643745140349474 /tmp/adamTestMvnQOhk7M0/228107921205031223 /tmp/adamTestMvnQOhk7M0/228107921205031223/binned.adam /tmp/adamTestMvnQOhk7M0/228107921205031223/binned.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/228107921205031223/binned.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/228107921205031223/binned.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/228107921205031223/binned.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/228107921205031223/binned.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/228107921205031223/binned.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/228107921205031223/binned.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/228107921205031223/binned.adam/_metadata /tmp/adamTestMvnQOhk7M0/228107921205031223/binned.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/228107921205031223/binned.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/228107921205031223/binned.adam/_references.avro /tmp/adamTestMvnQOhk7M0/228107921205031223/binned.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/228107921205031223/binned.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/228107921205031223/binned.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite5354860772911093858.adam /tmp/adamTestMvnQOhk7M0/TempSuite5354860772911093858.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite5354860772911093858.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite5354860772911093858.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite5354860772911093858.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite5354860772911093858.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite5354860772911093858.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite5354860772911093858.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite5354860772911093858.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite5354860772911093858.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/TempSuite5354860772911093858.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite5354860772911093858.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite5354860772911093858.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite5354860772911093858.adam/_header /tmp/adamTestMvnQOhk7M0/TempSuite5354860772911093858.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/bqsr14053536201866631856 /tmp/adamTestMvnQOhk7M0/bqsr14053536201866631856/.bqsr1.sam.crc /tmp/adamTestMvnQOhk7M0/bqsr14053536201866631856/bqsr1.sam /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite9177580764705072082 /tmp/adamTestMvnQOhk7M0/TempSuite7442351167336016322 /tmp/adamTestMvnQOhk7M0/small.vcf7669318046981063280.vcf /tmp/adamTestMvnQOhk7M0/TempSuite1504163183565701495 /tmp/adamTestMvnQOhk7M0/TempSuite6023586922428410797.adam /tmp/adamTestMvnQOhk7M0/TempSuite6023586922428410797.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite6023586922428410797.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite6023586922428410797.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite6023586922428410797.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite6023586922428410797.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite6023586922428410797.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite6023586922428410797.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite6023586922428410797.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite6023586922428410797.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite6023586922428410797.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite6023586922428410797.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite6023586922428410797.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/TempSuite6023586922428410797.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/TempSuite6023586922428410797.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite4922429411999164454 /tmp/adamTestMvnQOhk7M0/TempSuite2074372750793977924.sam /tmp/adamTestMvnQOhk7M0/TempSuite2074372750793977924.sam/part-r-00000.sam /tmp/adamTestMvnQOhk7M0/TempSuite2074372750793977924.sam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite2074372750793977924.sam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite2074372750793977924.sam/.part-r-00000.sam.crc /tmp/adamTestMvnQOhk7M0/6727053310719376067 /tmp/adamTestMvnQOhk7M0/6727053310719376067/unordered.sam /tmp/adamTestMvnQOhk7M0/6727053310719376067/.unordered.sam.crc /tmp/adamTestMvnQOhk7M0/TempSuite2438952094527156590.adam /tmp/adamTestMvnQOhk7M0/TempSuite2438952094527156590.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite2438952094527156590.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite2438952094527156590.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite2438952094527156590.adam/.part-00000-8799e909-0188-48a6-b847-526318b6b558-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite2438952094527156590.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite2438952094527156590.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite2438952094527156590.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite2438952094527156590.adam/part-00000-8799e909-0188-48a6-b847-526318b6b558-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite2438952094527156590.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/TempSuite2438952094527156590.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/TempSuite7655466650269656005 /tmp/adamTestMvnQOhk7M0/TempSuite7763850016927620066 /tmp/adamTestMvnQOhk7M0/TempSuite2800241236775353449.adam /tmp/adamTestMvnQOhk7M0/TempSuite2800241236775353449.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite2800241236775353449.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite2800241236775353449.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite2800241236775353449.adam/.part-00002-caa9d22d-05be-446c-b786-706a6b4c42f7-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite2800241236775353449.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite2800241236775353449.adam/part-00001-caa9d22d-05be-446c-b786-706a6b4c42f7-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite2800241236775353449.adam/part-00000-caa9d22d-05be-446c-b786-706a6b4c42f7-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite2800241236775353449.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite2800241236775353449.adam/part-00002-caa9d22d-05be-446c-b786-706a6b4c42f7-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite2800241236775353449.adam/_header /tmp/adamTestMvnQOhk7M0/TempSuite2800241236775353449.adam/.part-00001-caa9d22d-05be-446c-b786-706a6b4c42f7-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite2800241236775353449.adam/.part-00000-caa9d22d-05be-446c-b786-706a6b4c42f7-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite2154514311842150342.adam /tmp/adamTestMvnQOhk7M0/TempSuite2154514311842150342.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite2154514311842150342.adam/part-r-00001.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite2154514311842150342.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite2154514311842150342.adam/part-r-00002.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite2154514311842150342.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite2154514311842150342.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite2154514311842150342.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite2154514311842150342.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite2154514311842150342.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite2154514311842150342.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite2154514311842150342.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite2154514311842150342.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite2154514311842150342.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/TempSuite2154514311842150342.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite2154514311842150342.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite2154514311842150342.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite2154514311842150342.adam/part-r-00003.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite2154514311842150342.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/2996577277731369992 /tmp/adamTestMvnQOhk7M0/2996577277731369992/predicate.1.adam /tmp/adamTestMvnQOhk7M0/2996577277731369992/predicate.1.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/2996577277731369992/predicate.1.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/2996577277731369992/predicate.1.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/2996577277731369992/predicate.1.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/2996577277731369992/predicate.1.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/2996577277731369992/predicate.1.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/2996577277731369992/predicate.1.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/2996577277731369992/predicate.1.adam/_metadata /tmp/adamTestMvnQOhk7M0/2996577277731369992/predicate.1.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/2996577277731369992/predicate.1.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/2996577277731369992/predicate.1.adam/_references.avro /tmp/adamTestMvnQOhk7M0/2996577277731369992/predicate.1.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/2996577277731369992/predicate.1.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/2996577277731369992/predicate.1.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/bqsr1.sam6733131113928361704.sam /tmp/adamTestMvnQOhk7M0/TempSuite1366545508436506446 /tmp/adamTestMvnQOhk7M0/TempSuite939058681373171501 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite8067766400745210190 /tmp/adamTestMvnQOhk7M0/TempSuite5164804919732698302 /tmp/adamTestMvnQOhk7M0/reads4758341337765532057 /tmp/adamTestMvnQOhk7M0/reads4758341337765532057/reads2.fq /tmp/adamTestMvnQOhk7M0/reads4758341337765532057/reads2.fq/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/reads4758341337765532057/reads2.fq/.part-00000.crc /tmp/adamTestMvnQOhk7M0/reads4758341337765532057/reads2.fq/part-00000 /tmp/adamTestMvnQOhk7M0/reads4758341337765532057/reads2.fq/_SUCCESS /tmp/adamTestMvnQOhk7M0/reads4758341337765532057/reads1.fq /tmp/adamTestMvnQOhk7M0/reads4758341337765532057/reads1.fq/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/reads4758341337765532057/reads1.fq/.part-00000.crc /tmp/adamTestMvnQOhk7M0/reads4758341337765532057/reads1.fq/part-00000 /tmp/adamTestMvnQOhk7M0/reads4758341337765532057/reads1.fq/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite8123375641492663886 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite6568898000712099456 /tmp/adamTestMvnQOhk7M0/TempSuite3099941539739144919.bed /tmp/adamTestMvnQOhk7M0/TempSuite3099941539739144919.bed/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite3099941539739144919.bed/.part-00000.crc /tmp/adamTestMvnQOhk7M0/TempSuite3099941539739144919.bed/part-00000 /tmp/adamTestMvnQOhk7M0/TempSuite3099941539739144919.bed/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite481994599066708114 /tmp/adamTestMvnQOhk7M0/TempSuite7920333410925947011.adam /tmp/adamTestMvnQOhk7M0/TempSuite7920333410925947011.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite7920333410925947011.adam/._partitionedByStartPos.crc /tmp/adamTestMvnQOhk7M0/TempSuite7920333410925947011.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite7920333410925947011.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite7920333410925947011.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/TempSuite7920333410925947011.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite7920333410925947011.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite7920333410925947011.adam/referenceName=1 /tmp/adamTestMvnQOhk7M0/TempSuite7920333410925947011.adam/referenceName=1/positionBin=14 /tmp/adamTestMvnQOhk7M0/TempSuite7920333410925947011.adam/referenceName=1/positionBin=14/.part-00000-02ca2ce1-a200-4ae3-a162-ee4c83d00e98.c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite7920333410925947011.adam/referenceName=1/positionBin=14/part-00000-02ca2ce1-a200-4ae3-a162-ee4c83d00e98.c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite7920333410925947011.adam/referenceName=1/positionBin=169 /tmp/adamTestMvnQOhk7M0/TempSuite7920333410925947011.adam/referenceName=1/positionBin=169/.part-00001-02ca2ce1-a200-4ae3-a162-ee4c83d00e98.c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite7920333410925947011.adam/referenceName=1/positionBin=169/part-00001-02ca2ce1-a200-4ae3-a162-ee4c83d00e98.c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite7920333410925947011.adam/referenceName=1/positionBin=240 /tmp/adamTestMvnQOhk7M0/TempSuite7920333410925947011.adam/referenceName=1/positionBin=240/part-00002-02ca2ce1-a200-4ae3-a162-ee4c83d00e98.c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite7920333410925947011.adam/referenceName=1/positionBin=240/.part-00002-02ca2ce1-a200-4ae3-a162-ee4c83d00e98.c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite7920333410925947011.adam/referenceName=1/positionBin=0 /tmp/adamTestMvnQOhk7M0/TempSuite7920333410925947011.adam/referenceName=1/positionBin=0/.part-00000-02ca2ce1-a200-4ae3-a162-ee4c83d00e98.c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite7920333410925947011.adam/referenceName=1/positionBin=0/part-00000-02ca2ce1-a200-4ae3-a162-ee4c83d00e98.c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite7920333410925947011.adam/_partitionedByStartPos /tmp/adamTestMvnQOhk7M0/javaAC6271042297614008789 /tmp/adamTestMvnQOhk7M0/javaAC6271042297614008789/testRdd.coverage.adam /tmp/adamTestMvnQOhk7M0/javaAC6271042297614008789/testRdd.coverage.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/javaAC6271042297614008789/testRdd.coverage.adam/part-r-00001.gz.parquet /tmp/adamTestMvnQOhk7M0/javaAC6271042297614008789/testRdd.coverage.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/javaAC6271042297614008789/testRdd.coverage.adam/part-r-00002.gz.parquet /tmp/adamTestMvnQOhk7M0/javaAC6271042297614008789/testRdd.coverage.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/javaAC6271042297614008789/testRdd.coverage.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/javaAC6271042297614008789/testRdd.coverage.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/javaAC6271042297614008789/testRdd.coverage.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/javaAC6271042297614008789/testRdd.coverage.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/javaAC6271042297614008789/testRdd.coverage.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/javaAC6271042297614008789/testRdd.coverage.adam/_metadata /tmp/adamTestMvnQOhk7M0/javaAC6271042297614008789/testRdd.coverage.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/javaAC6271042297614008789/testRdd.coverage.adam/_samples.avro /tmp/adamTestMvnQOhk7M0/javaAC6271042297614008789/testRdd.coverage.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/javaAC6271042297614008789/testRdd.coverage.adam/._samples.avro.crc /tmp/adamTestMvnQOhk7M0/javaAC6271042297614008789/testRdd.coverage.adam/_references.avro /tmp/adamTestMvnQOhk7M0/javaAC6271042297614008789/testRdd.coverage.adam/part-r-00003.gz.parquet /tmp/adamTestMvnQOhk7M0/javaAC6271042297614008789/testRdd.coverage.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite3645139009939371592.bed /tmp/adamTestMvnQOhk7M0/TempSuite3645139009939371592.bed/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite3645139009939371592.bed/.part-00000.crc /tmp/adamTestMvnQOhk7M0/TempSuite3645139009939371592.bed/part-00000 /tmp/adamTestMvnQOhk7M0/TempSuite3645139009939371592.bed/_SUCCESS /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7802463574104964759.interval_list /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7802463574104964759.interval_list/.part-00001.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7802463574104964759.interval_list/.part-00003.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7802463574104964759.interval_list/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7802463574104964759.interval_list/part-00003 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7802463574104964759.interval_list/.part-00000.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7802463574104964759.interval_list/part-00000 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7802463574104964759.interval_list/part-00002 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7802463574104964759.interval_list/_SUCCESS /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7802463574104964759.interval_list/part-00001 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7802463574104964759.interval_list/.part-00002.crc /tmp/adamTestMvnQOhk7M0/TempSuite7414775091708473411.adam /tmp/adamTestMvnQOhk7M0/TempSuite7414775091708473411.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/TempSuite7414775091708473411.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite7414775091708473411.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite7414775091708473411.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/TempSuite7414775091708473411.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite7414775091708473411.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite7414775091708473411.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite7414775091708473411.adam/_metadata /tmp/adamTestMvnQOhk7M0/TempSuite7414775091708473411.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/TempSuite7414775091708473411.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite7414775091708473411.adam/_header /tmp/adamTestMvnQOhk7M0/TempSuite7414775091708473411.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite1038719123492135180 /tmp/adamTestMvnQOhk7M0/random.vcf41212052918530086.vcf /tmp/adamTestMvnQOhk7M0/.TempSuite8113489797281781813.sam.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7698247963935593984.bed /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7698247963935593984.bed/.part-00001.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7698247963935593984.bed/.part-00003.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7698247963935593984.bed/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7698247963935593984.bed/part-00003 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7698247963935593984.bed/.part-00000.crc /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7698247963935593984.bed/part-00000 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7698247963935593984.bed/part-00002 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7698247963935593984.bed/_SUCCESS /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7698247963935593984.bed/part-00001 /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite7698247963935593984.bed/.part-00002.crc /tmp/adamTestMvnQOhk7M0/TempSuite136390844695193024.adam /tmp/adamTestMvnQOhk7M0/TempSuite136390844695193024.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite136390844695193024.adam/.part-00000-f56fd3d7-0f6f-4976-8a5a-e36fe493e9f8-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite136390844695193024.adam/._header.crc /tmp/adamTestMvnQOhk7M0/TempSuite136390844695193024.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite136390844695193024.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite136390844695193024.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite136390844695193024.adam/part-00000-f56fd3d7-0f6f-4976-8a5a-e36fe493e9f8-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite136390844695193024.adam/_header /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite1655076614008819780 /tmp/adamTestMvnQOhk7M0/TempSuite608919554647579225 /tmp/adamTestMvnQOhk7M0/TempSuite3676685490943365247 /tmp/adamTestMvnQOhk7M0/TempSuite5620534736613788252.fq /tmp/adamTestMvnQOhk7M0/TempSuite5620534736613788252.fq/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite5620534736613788252.fq/.part-00000.crc /tmp/adamTestMvnQOhk7M0/TempSuite5620534736613788252.fq/part-00000 /tmp/adamTestMvnQOhk7M0/TempSuite5620534736613788252.fq/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite1237974308466402234.adam /tmp/adamTestMvnQOhk7M0/TempSuite1237974308466402234.adam/.part-00000-ea3ecfb5-1aa4-4d95-9305-7cbe2a2e4e7b-c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite1237974308466402234.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite1237974308466402234.adam/part-00000-ea3ecfb5-1aa4-4d95-9305-7cbe2a2e4e7b-c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite1237974308466402234.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite1237974308466402234.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite1237974308466402234.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite1237974308466402234.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite1237974308466402234.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite1237974308466402234.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/TempSuite1237974308466402234.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/FeatureDatasetFunctionsSuite5075419229705645541.interval_list /tmp/adamTestMvnQOhk7M0/TempSuite5299341422942261197.bed /tmp/adamTestMvnQOhk7M0/TempSuite5299341422942261197.bed/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite5299341422942261197.bed/.part-00000.crc /tmp/adamTestMvnQOhk7M0/TempSuite5299341422942261197.bed/part-00000 /tmp/adamTestMvnQOhk7M0/TempSuite5299341422942261197.bed/_SUCCESS /tmp/adamTestMvnQOhk7M0/SliceDatasetSuite7735815009535088760.fasta /tmp/adamTestMvnQOhk7M0/random.vcf6555077175356648850.vcf /tmp/adamTestMvnQOhk7M0/TempSuite1444736608228156104.adam /tmp/adamTestMvnQOhk7M0/TempSuite1444736608228156104.adam/referenceName=2 /tmp/adamTestMvnQOhk7M0/TempSuite1444736608228156104.adam/referenceName=2/positionBin=189 /tmp/adamTestMvnQOhk7M0/TempSuite1444736608228156104.adam/referenceName=2/positionBin=189/part-00000-916ff901-2db0-4ffd-aad1-d279873bb00f.c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite1444736608228156104.adam/referenceName=2/positionBin=189/.part-00000-916ff901-2db0-4ffd-aad1-d279873bb00f.c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite1444736608228156104.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite1444736608228156104.adam/._partitionedByStartPos.crc /tmp/adamTestMvnQOhk7M0/TempSuite1444736608228156104.adam/._processingSteps.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite1444736608228156104.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite1444736608228156104.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite1444736608228156104.adam/._readGroups.avro.crc /tmp/adamTestMvnQOhk7M0/TempSuite1444736608228156104.adam/_references.avro /tmp/adamTestMvnQOhk7M0/TempSuite1444736608228156104.adam/_processingSteps.avro /tmp/adamTestMvnQOhk7M0/TempSuite1444736608228156104.adam/referenceName=1 /tmp/adamTestMvnQOhk7M0/TempSuite1444736608228156104.adam/referenceName=1/positionBin=26 /tmp/adamTestMvnQOhk7M0/TempSuite1444736608228156104.adam/referenceName=1/positionBin=26/part-00000-916ff901-2db0-4ffd-aad1-d279873bb00f.c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite1444736608228156104.adam/referenceName=1/positionBin=26/.part-00000-916ff901-2db0-4ffd-aad1-d279873bb00f.c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite1444736608228156104.adam/referenceName=1/positionBin=240 /tmp/adamTestMvnQOhk7M0/TempSuite1444736608228156104.adam/referenceName=1/positionBin=240/part-00000-916ff901-2db0-4ffd-aad1-d279873bb00f.c000.snappy.parquet /tmp/adamTestMvnQOhk7M0/TempSuite1444736608228156104.adam/referenceName=1/positionBin=240/.part-00000-916ff901-2db0-4ffd-aad1-d279873bb00f.c000.snappy.parquet.crc /tmp/adamTestMvnQOhk7M0/TempSuite1444736608228156104.adam/_readGroups.avro /tmp/adamTestMvnQOhk7M0/TempSuite1444736608228156104.adam/_partitionedByStartPos /tmp/adamTestMvnQOhk7M0/TempSuite4865171277806407807.bed /tmp/adamTestMvnQOhk7M0/TempSuite4865171277806407807.bed/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite4865171277806407807.bed/.part-00000.crc /tmp/adamTestMvnQOhk7M0/TempSuite4865171277806407807.bed/part-00000 /tmp/adamTestMvnQOhk7M0/TempSuite4865171277806407807.bed/_SUCCESS /tmp/adamTestMvnQOhk7M0/TempSuite7973500997686862071 /tmp/adamTestMvnQOhk7M0/TempSuite3566492851210799693_2.fq /tmp/adamTestMvnQOhk7M0/TempSuite3566492851210799693_2.fq/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/TempSuite3566492851210799693_2.fq/.part-00000.crc /tmp/adamTestMvnQOhk7M0/TempSuite3566492851210799693_2.fq/part-00000 /tmp/adamTestMvnQOhk7M0/TempSuite3566492851210799693_2.fq/_SUCCESS /tmp/adamTestMvnQOhk7M0/.SequenceDatasetSuite2737868469884615073.fasta.crc /tmp/adamTestMvnQOhk7M0/TempSuite8941416844737674151 /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite5739827841749314075.adam /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite5739827841749314075.adam/.part-r-00001.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite5739827841749314075.adam/part-r-00001.gz.parquet /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite5739827841749314075.adam/part-r-00000.gz.parquet /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite5739827841749314075.adam/part-r-00002.gz.parquet /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite5739827841749314075.adam/._SUCCESS.crc /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite5739827841749314075.adam/.part-r-00000.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite5739827841749314075.adam/._metadata.crc /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite5739827841749314075.adam/._references.avro.crc /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite5739827841749314075.adam/_SUCCESS /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite5739827841749314075.adam/.part-r-00003.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite5739827841749314075.adam/_metadata /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite5739827841749314075.adam/.part-r-00002.gz.parquet.crc /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite5739827841749314075.adam/_common_metadata /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite5739827841749314075.adam/_references.avro /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite5739827841749314075.adam/part-r-00003.gz.parquet /tmp/adamTestMvnQOhk7M0/SequenceDatasetSuite5739827841749314075.adam/._common_metadata.crc /tmp/adamTestMvnQOhk7M0/1568827618626-0 /tmp/adamTestMvnQOhk7M0/1568827618626-0/.test.gvcf.vcf.crc /tmp/adamTestMvnQOhk7M0/1568827618626-0/test.gvcf.vcf /tmp/adamTestMvnQOhk7M0/sorted.sam6219041909010539405.sam rm -rf ${ADAM_MVN_TMP_DIR} + rm -rf /tmp/adamTestMvnQOhk7M0 find . -name pom.xml \ -exec sed -i.bak \ -e "s:sun.io.serialization.extendedDebugInfo=true -Djava.io.tmpdir=${ADAM_MVN_TMP_DIR}:sun.io.serialization.extendedDebugInfo=true:g" \ {} \; + find . -name pom.xml -exec sed -i.bak -e 's:sun.io.serialization.extendedDebugInfo=true -Djava.io.tmpdir=/tmp/adamTestMvnQOhk7M0:sun.io.serialization.extendedDebugInfo=true:g' '{}' ';' find . -name "*.bak" -exec rm -f {} \; + find . -name '*.bak' -exec rm -f '{}' ';' # run integration tests # make a temp directory ADAM_TMP_DIR=$(mktemp -d -t adamTestXXXXXXX) mktemp -d -t adamTestXXXXXXX ++ mktemp -d -t adamTestXXXXXXX + ADAM_TMP_DIR=/tmp/adamTestuYI4Iy4 # Just to be paranoid.. use a directory internal to the ADAM_TMP_DIR ADAM_TMP_DIR=$ADAM_TMP_DIR/deleteMePleaseThisIsNoLongerNeeded + ADAM_TMP_DIR=/tmp/adamTestuYI4Iy4/deleteMePleaseThisIsNoLongerNeeded mkdir $ADAM_TMP_DIR + mkdir /tmp/adamTestuYI4Iy4/deleteMePleaseThisIsNoLongerNeeded # set the TMPDIR envar, which is used by python to choose where to make temp directories export TMPDIR=${ADAM_TMP_DIR} + export TMPDIR=/tmp/adamTestuYI4Iy4/deleteMePleaseThisIsNoLongerNeeded + TMPDIR=/tmp/adamTestuYI4Iy4/deleteMePleaseThisIsNoLongerNeeded pushd $PROJECT_ROOT + pushd /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/scripts/.. ~/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu ~/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu # Copy the jar into our temp space for testing cp -r . $ADAM_TMP_DIR + cp -r . /tmp/adamTestuYI4Iy4/deleteMePleaseThisIsNoLongerNeeded popd + popd ~/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu pushd $ADAM_TMP_DIR + pushd /tmp/adamTestuYI4Iy4/deleteMePleaseThisIsNoLongerNeeded /tmp/adamTestuYI4Iy4/deleteMePleaseThisIsNoLongerNeeded ~/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu # what hadoop version are we on? format string for downloading spark assembly if [[ $HADOOP_VERSION =~ ^2\.6 ]]; then HADOOP=hadoop2.6 elif [[ $HADOOP_VERSION =~ ^2\.7 ]]; then HADOOP=hadoop2.7 else echo "Unknown Hadoop version." exit 1 fi + [[ 2.7.5 =~ ^2\.6 ]] + [[ 2.7.5 =~ ^2\.7 ]] + HADOOP=hadoop2.7 # set spark artifact string for downloading assembly SPARK=spark-${SPARK_VERSION} + SPARK=spark-2.4.4 # download prepackaged spark assembly # Spark 2.4.3+ needs special case for Scala 2.12 if [ ${SCALAVER} == 2.12 ]; then curl \ -L "https://www.apache.org/dyn/mirrors/mirrors.cgi?action=download&filename=spark/${SPARK}/${SPARK}-bin-without-hadoop-scala-2.12.tgz" \ -o ${SPARK}-bin-without-hadoop-scala-2.12.tgz tar xzvf ${SPARK}-bin-without-hadoop-scala-2.12.tgz export SPARK_HOME=${ADAM_TMP_DIR}/${SPARK}-bin-without-hadoop-scala-2.12 curl \ -L "http://www-us.apache.org/dist/hadoop/common/hadoop-2.7.7/hadoop-2.7.7.tar.gz" \ -o hadoop-2.7.7.tar.gz tar xzvf hadoop-2.7.7.tar.gz # remove references to avro 1.7.x find hadoop-2.7.7 -name *.jar | grep avro | xargs rm # download avro 1.8.x #curl \ # -L "http://repo1.maven.org/maven2/org/apache/avro/avro/1.8.2/avro-1.8.2.jar" \ # -o hadoop-2.7.7/share/hadoop/common/avro-1.8.2.jar export SPARK_DIST_CLASSPATH=$(hadoop-2.7.7/bin/hadoop classpath) else curl \ -L "https://www.apache.org/dyn/mirrors/mirrors.cgi?action=download&filename=spark/${SPARK}/${SPARK}-bin-${HADOOP}.tgz" \ -o ${SPARK}-bin-${HADOOP}.tgz tar xzvf ${SPARK}-bin-${HADOOP}.tgz export SPARK_HOME=${ADAM_TMP_DIR}/${SPARK}-bin-${HADOOP} fi + '[' 2.11 == 2.12 ']' + curl -L 'https://www.apache.org/dyn/mirrors/mirrors.cgi?action=download&filename=spark/spark-2.4.4/spark-2.4.4-bin-hadoop2.7.tgz' -o spark-2.4.4-bin-hadoop2.7.tgz % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 0 219M 0 152k 0 0 182k 0 0:20:32 --:--:-- 0:20:32 182k 0 219M 0 1862k 0 0 1013k 0 0:03:41 0:00:01 0:03:40 1709k 1 219M 1 4349k 0 0 1524k 0 0:02:27 0:00:02 0:02:25 2081k 2 219M 2 5189k 0 0 1343k 0 0:02:47 0:00:03 0:02:44 1663k 2 219M 2 5726k 0 0 1184k 0 0:03:09 0:00:04 0:03:05 1393k 4 219M 4 9.7M 0 0 1716k 0 0:02:10 0:00:05 0:02:05 1972k 7 219M 7 16.8M 0 0 2505k 0 0:01:29 0:00:06 0:01:23 3047k 8 219M 8 17.6M 0 0 2304k 0 0:01:37 0:00:07 0:01:30 2750k 9 219M 9 20.3M 0 0 2343k 0 0:01:35 0:00:08 0:01:27 3115k 11 219M 11 25.8M 0 0 2693k 0 0:01:23 0:00:09 0:01:14 4152k 13 219M 13 29.5M 0 0 2782k 0 0:01:20 0:00:10 0:01:10 4014k 14 219M 14 31.0M 0 0 2678k 0 0:01:23 0:00:11 0:01:12 2917k 16 219M 16 37.1M 0 0 2960k 0 0:01:15 0:00:12 0:01:03 3995k 17 219M 17 37.9M 0 0 2807k 0 0:01:20 0:00:13 0:01:07 3635k 17 219M 17 38.3M 0 0 2644k 0 0:01:24 0:00:14 0:01:10 2549k 18 219M 18 41.4M 0 0 2678k 0 0:01:23 0:00:15 0:01:08 2449k 21 219M 21 46.7M 0 0 2813k 0 0:01:19 0:00:17 0:01:02 3124k 22 219M 22 49.3M 0 0 2831k 0 0:01:19 0:00:17 0:01:02 2498k 23 219M 23 52.3M 0 0 2844k 0 0:01:19 0:00:18 0:01:01 2944k 26 219M 26 57.6M 0 0 2974k 0 0:01:15 0:00:19 0:00:56 3952k 28 219M 28 61.7M 0 0 3024k 0 0:01:14 0:00:20 0:00:54 4106k 28 219M 28 63.2M 0 0 2965k 0 0:01:15 0:00:21 0:00:54 3500k 29 219M 29 65.2M 0 0 2924k 0 0:01:16 0:00:22 0:00:54 3257k 32 219M 32 72.3M 0 0 3105k 0 0:01:12 0:00:23 0:00:49 4092k 33 219M 33 74.4M 0 0 3065k 0 0:01:13 0:00:24 0:00:49 3425k 35 219M 35 77.3M 0 0 3044k 0 0:01:13 0:00:26 0:00:47 3122k 36 219M 36 79.9M 0 0 3050k 0 0:01:13 0:00:26 0:00:47 3424k 38 219M 38 83.9M 0 0 3084k 0 0:01:12 0:00:27 0:00:45 3810k 39 219M 39 86.1M 0 0 3055k 0 0:01:13 0:00:28 0:00:45 2818k 39 219M 39 87.5M 0 0 3006k 0 0:01:14 0:00:29 0:00:45 2710k 41 219M 41 90.8M 0 0 3017k 0 0:01:14 0:00:30 0:00:44 2871k 42 219M 42 94.1M 0 0 3026k 0 0:01:14 0:00:31 0:00:43 2900k 44 219M 44 97.3M 0 0 3036k 0 0:01:14 0:00:32 0:00:42 2765k 46 219M 46 102M 0 0 3113k 0 0:01:12 0:00:33 0:00:39 3447k 47 219M 47 104M 0 0 3058k 0 0:01:13 0:00:34 0:00:39 3371k 50 219M 50 111M 0 0 3192k 0 0:01:10 0:00:35 0:00:35 4274k 52 219M 52 115M 0 0 3196k 0 0:01:10 0:00:37 0:00:33 4239k 53 219M 53 117M 0 0 3175k 0 0:01:10 0:00:37 0:00:33 4087k 55 219M 55 120M 0 0 3187k 0 0:01:10 0:00:38 0:00:32 3690k 58 219M 58 127M 0 0 3261k 0 0:01:08 0:00:39 0:00:29 4638k 59 219M 59 131M 0 0 3292k 0 0:01:08 0:00:40 0:00:28 4004k 62 219M 62 136M 0 0 3341k 0 0:01:07 0:00:41 0:00:26 4453k 64 219M 64 141M 0 0 3388k 0 0:01:06 0:00:42 0:00:24 5006k 66 219M 66 146M 0 0 3433k 0 0:01:05 0:00:43 0:00:22 5342k 69 219M 69 151M 0 0 3454k 0 0:01:05 0:00:44 0:00:21 5001k 69 219M 69 152M 0 0 3416k 0 0:01:05 0:00:45 0:00:20 4428k 70 219M 70 153M 0 0 3362k 0 0:01:06 0:00:46 0:00:20 3540k 73 219M 73 160M 0 0 3443k 0 0:01:05 0:00:47 0:00:18 3917k 76 219M 76 167M 0 0 3506k 0 0:01:04 0:00:48 0:00:16 4125k 79 219M 79 173M 0 0 3564k 0 0:01:03 0:00:49 0:00:14 4572k 81 219M 81 179M 0 0 3614k 0 0:01:02 0:00:50 0:00:12 5428k 83 219M 83 183M 0 0 3625k 0 0:01:01 0:00:51 0:00:10 6098k 84 219M 84 186M 0 0 3602k 0 0:01:02 0:00:52 0:00:10 5073k 86 219M 86 189M 0 0 3612k 0 0:01:02 0:00:53 0:00:09 4682k 88 219M 88 194M 0 0 3636k 0 0:01:01 0:00:54 0:00:07 4350k 90 219M 90 197M 0 0 3622k 0 0:01:02 0:00:55 0:00:07 3702k 93 219M 93 205M 0 0 3694k 0 0:01:00 0:00:56 0:00:04 4406k 94 219M 94 207M 0 0 3666k 0 0:01:01 0:00:57 0:00:04 4348k 96 219M 96 211M 0 0 3687k 0 0:01:00 0:00:58 0:00:02 4493k 98 219M 98 215M 0 0 3683k 0 0:01:00 0:00:59 0:00:01 4207k 99 219M 99 218M 0 0 3684k 0 0:01:00 0:01:00 --:--:-- 4380k 100 219M 100 219M 0 0 3636k 0 0:01:01 0:01:01 --:--:-- 2958k + tar xzvf spark-2.4.4-bin-hadoop2.7.tgz spark-2.4.4-bin-hadoop2.7/ spark-2.4.4-bin-hadoop2.7/R/ spark-2.4.4-bin-hadoop2.7/R/lib/ spark-2.4.4-bin-hadoop2.7/R/lib/sparkr.zip spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/ spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/INDEX spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/html/ spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/html/R.css spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/html/00Index.html spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/help/ spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/help/aliases.rds spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/help/AnIndex spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/help/SparkR.rdx spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/help/SparkR.rdb spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/help/paths.rds spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/worker/ spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/worker/worker.R spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/worker/daemon.R spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/tests/ spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/tests/testthat/ spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/tests/testthat/test_basic.R spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/profile/ spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/profile/shell.R spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/profile/general.R spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/R/ spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/R/SparkR.rdx spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/R/SparkR.rdb spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/R/SparkR spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/Meta/ spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/Meta/nsInfo.rds spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/Meta/links.rds spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/Meta/hsearch.rds spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/Meta/Rd.rds spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/Meta/features.rds spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/Meta/package.rds spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/DESCRIPTION spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/NAMESPACE spark-2.4.4-bin-hadoop2.7/sbin/ spark-2.4.4-bin-hadoop2.7/sbin/stop-shuffle-service.sh spark-2.4.4-bin-hadoop2.7/sbin/start-thriftserver.sh spark-2.4.4-bin-hadoop2.7/sbin/start-slave.sh spark-2.4.4-bin-hadoop2.7/sbin/start-shuffle-service.sh spark-2.4.4-bin-hadoop2.7/sbin/start-mesos-shuffle-service.sh spark-2.4.4-bin-hadoop2.7/sbin/start-master.sh spark-2.4.4-bin-hadoop2.7/sbin/start-history-server.sh spark-2.4.4-bin-hadoop2.7/sbin/spark-config.sh spark-2.4.4-bin-hadoop2.7/sbin/stop-thriftserver.sh spark-2.4.4-bin-hadoop2.7/sbin/stop-slaves.sh spark-2.4.4-bin-hadoop2.7/sbin/stop-slave.sh spark-2.4.4-bin-hadoop2.7/sbin/stop-mesos-shuffle-service.sh spark-2.4.4-bin-hadoop2.7/sbin/stop-mesos-dispatcher.sh spark-2.4.4-bin-hadoop2.7/sbin/stop-master.sh spark-2.4.4-bin-hadoop2.7/sbin/stop-history-server.sh spark-2.4.4-bin-hadoop2.7/sbin/stop-all.sh spark-2.4.4-bin-hadoop2.7/sbin/start-slaves.sh spark-2.4.4-bin-hadoop2.7/sbin/start-mesos-dispatcher.sh spark-2.4.4-bin-hadoop2.7/sbin/start-all.sh spark-2.4.4-bin-hadoop2.7/sbin/spark-daemons.sh spark-2.4.4-bin-hadoop2.7/sbin/spark-daemon.sh spark-2.4.4-bin-hadoop2.7/sbin/slaves.sh spark-2.4.4-bin-hadoop2.7/python/ spark-2.4.4-bin-hadoop2.7/python/dist/ spark-2.4.4-bin-hadoop2.7/python/pyspark.egg-info/ spark-2.4.4-bin-hadoop2.7/python/pyspark.egg-info/SOURCES.txt spark-2.4.4-bin-hadoop2.7/python/pyspark.egg-info/dependency_links.txt spark-2.4.4-bin-hadoop2.7/python/pyspark.egg-info/top_level.txt spark-2.4.4-bin-hadoop2.7/python/pyspark.egg-info/PKG-INFO spark-2.4.4-bin-hadoop2.7/python/pyspark.egg-info/requires.txt spark-2.4.4-bin-hadoop2.7/python/README.md spark-2.4.4-bin-hadoop2.7/python/MANIFEST.in spark-2.4.4-bin-hadoop2.7/python/setup.py spark-2.4.4-bin-hadoop2.7/python/run-tests.py spark-2.4.4-bin-hadoop2.7/python/run-tests-with-coverage spark-2.4.4-bin-hadoop2.7/python/test_support/ spark-2.4.4-bin-hadoop2.7/python/test_support/userlibrary.py spark-2.4.4-bin-hadoop2.7/python/test_support/userlib-0.1.zip spark-2.4.4-bin-hadoop2.7/python/test_support/sql/ spark-2.4.4-bin-hadoop2.7/python/test_support/sql/text-test.txt spark-2.4.4-bin-hadoop2.7/python/test_support/sql/streaming/ spark-2.4.4-bin-hadoop2.7/python/test_support/sql/streaming/text-test.txt spark-2.4.4-bin-hadoop2.7/python/test_support/sql/people_array_utf16le.json spark-2.4.4-bin-hadoop2.7/python/test_support/sql/people_array.json spark-2.4.4-bin-hadoop2.7/python/test_support/sql/people1.json spark-2.4.4-bin-hadoop2.7/python/test_support/sql/people.json spark-2.4.4-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/ spark-2.4.4-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2015/ spark-2.4.4-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2015/month=9/ spark-2.4.4-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2015/month=9/day=1/ spark-2.4.4-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2015/month=9/day=1/part-r-00007.gz.parquet spark-2.4.4-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2015/month=9/day=1/.part-r-00007.gz.parquet.crc spark-2.4.4-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2015/month=10/ spark-2.4.4-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2015/month=10/day=26/ spark-2.4.4-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2015/month=10/day=26/part-r-00005.gz.parquet spark-2.4.4-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2015/month=10/day=26/.part-r-00005.gz.parquet.crc spark-2.4.4-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2015/month=10/day=25/ spark-2.4.4-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2015/month=10/day=25/part-r-00004.gz.parquet spark-2.4.4-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2015/month=10/day=25/part-r-00002.gz.parquet spark-2.4.4-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2015/month=10/day=25/.part-r-00004.gz.parquet.crc spark-2.4.4-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2015/month=10/day=25/.part-r-00002.gz.parquet.crc spark-2.4.4-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2014/ spark-2.4.4-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2014/month=9/ spark-2.4.4-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2014/month=9/day=1/ spark-2.4.4-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2014/month=9/day=1/part-r-00008.gz.parquet spark-2.4.4-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2014/month=9/day=1/.part-r-00008.gz.parquet.crc spark-2.4.4-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/_metadata spark-2.4.4-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/_common_metadata spark-2.4.4-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/_SUCCESS spark-2.4.4-bin-hadoop2.7/python/test_support/sql/orc_partitioned/ spark-2.4.4-bin-hadoop2.7/python/test_support/sql/orc_partitioned/b=1/ spark-2.4.4-bin-hadoop2.7/python/test_support/sql/orc_partitioned/b=1/c=1/ spark-2.4.4-bin-hadoop2.7/python/test_support/sql/orc_partitioned/b=1/c=1/part-r-00000-829af031-b970-49d6-ad39-30460a0be2c8.orc spark-2.4.4-bin-hadoop2.7/python/test_support/sql/orc_partitioned/b=1/c=1/.part-r-00000-829af031-b970-49d6-ad39-30460a0be2c8.orc.crc spark-2.4.4-bin-hadoop2.7/python/test_support/sql/orc_partitioned/b=0/ spark-2.4.4-bin-hadoop2.7/python/test_support/sql/orc_partitioned/b=0/c=0/ spark-2.4.4-bin-hadoop2.7/python/test_support/sql/orc_partitioned/b=0/c=0/part-r-00000-829af031-b970-49d6-ad39-30460a0be2c8.orc spark-2.4.4-bin-hadoop2.7/python/test_support/sql/orc_partitioned/b=0/c=0/.part-r-00000-829af031-b970-49d6-ad39-30460a0be2c8.orc.crc spark-2.4.4-bin-hadoop2.7/python/test_support/sql/orc_partitioned/_SUCCESS spark-2.4.4-bin-hadoop2.7/python/test_support/sql/ages_newlines.csv spark-2.4.4-bin-hadoop2.7/python/test_support/sql/ages.csv spark-2.4.4-bin-hadoop2.7/python/test_support/hello/ spark-2.4.4-bin-hadoop2.7/python/test_support/hello/sub_hello/ spark-2.4.4-bin-hadoop2.7/python/test_support/hello/sub_hello/sub_hello.txt spark-2.4.4-bin-hadoop2.7/python/test_support/hello/hello.txt spark-2.4.4-bin-hadoop2.7/python/test_support/SimpleHTTPServer.py spark-2.4.4-bin-hadoop2.7/python/test_coverage/ spark-2.4.4-bin-hadoop2.7/python/test_coverage/sitecustomize.py spark-2.4.4-bin-hadoop2.7/python/test_coverage/coverage_daemon.py spark-2.4.4-bin-hadoop2.7/python/test_coverage/conf/ spark-2.4.4-bin-hadoop2.7/python/test_coverage/conf/spark-defaults.conf spark-2.4.4-bin-hadoop2.7/python/setup.cfg spark-2.4.4-bin-hadoop2.7/python/run-tests spark-2.4.4-bin-hadoop2.7/python/pyspark/ spark-2.4.4-bin-hadoop2.7/python/pyspark/python/ spark-2.4.4-bin-hadoop2.7/python/pyspark/python/pyspark/ spark-2.4.4-bin-hadoop2.7/python/pyspark/python/pyspark/shell.py spark-2.4.4-bin-hadoop2.7/python/pyspark/shuffle.py spark-2.4.4-bin-hadoop2.7/python/pyspark/serializers.py spark-2.4.4-bin-hadoop2.7/python/pyspark/rdd.py spark-2.4.4-bin-hadoop2.7/python/pyspark/profiler.py spark-2.4.4-bin-hadoop2.7/python/pyspark/java_gateway.py spark-2.4.4-bin-hadoop2.7/python/pyspark/files.py spark-2.4.4-bin-hadoop2.7/python/pyspark/daemon.py spark-2.4.4-bin-hadoop2.7/python/pyspark/context.py spark-2.4.4-bin-hadoop2.7/python/pyspark/conf.py spark-2.4.4-bin-hadoop2.7/python/pyspark/cloudpickle.py spark-2.4.4-bin-hadoop2.7/python/pyspark/broadcast.py spark-2.4.4-bin-hadoop2.7/python/pyspark/accumulators.py spark-2.4.4-bin-hadoop2.7/python/pyspark/__init__.py spark-2.4.4-bin-hadoop2.7/python/pyspark/worker.py spark-2.4.4-bin-hadoop2.7/python/pyspark/version.py spark-2.4.4-bin-hadoop2.7/python/pyspark/util.py spark-2.4.4-bin-hadoop2.7/python/pyspark/tests.py spark-2.4.4-bin-hadoop2.7/python/pyspark/test_serializers.py spark-2.4.4-bin-hadoop2.7/python/pyspark/test_broadcast.py spark-2.4.4-bin-hadoop2.7/python/pyspark/taskcontext.py spark-2.4.4-bin-hadoop2.7/python/pyspark/storagelevel.py spark-2.4.4-bin-hadoop2.7/python/pyspark/traceback_utils.py spark-2.4.4-bin-hadoop2.7/python/pyspark/streaming/ spark-2.4.4-bin-hadoop2.7/python/pyspark/streaming/tests.py spark-2.4.4-bin-hadoop2.7/python/pyspark/streaming/kinesis.py spark-2.4.4-bin-hadoop2.7/python/pyspark/streaming/kafka.py spark-2.4.4-bin-hadoop2.7/python/pyspark/streaming/flume.py spark-2.4.4-bin-hadoop2.7/python/pyspark/streaming/dstream.py spark-2.4.4-bin-hadoop2.7/python/pyspark/streaming/context.py spark-2.4.4-bin-hadoop2.7/python/pyspark/streaming/util.py spark-2.4.4-bin-hadoop2.7/python/pyspark/streaming/listener.py spark-2.4.4-bin-hadoop2.7/python/pyspark/streaming/__init__.py spark-2.4.4-bin-hadoop2.7/python/pyspark/status.py spark-2.4.4-bin-hadoop2.7/python/pyspark/statcounter.py spark-2.4.4-bin-hadoop2.7/python/pyspark/sql/ spark-2.4.4-bin-hadoop2.7/python/pyspark/sql/tests.py spark-2.4.4-bin-hadoop2.7/python/pyspark/sql/streaming.py spark-2.4.4-bin-hadoop2.7/python/pyspark/sql/session.py spark-2.4.4-bin-hadoop2.7/python/pyspark/sql/readwriter.py spark-2.4.4-bin-hadoop2.7/python/pyspark/sql/functions.py spark-2.4.4-bin-hadoop2.7/python/pyspark/sql/dataframe.py spark-2.4.4-bin-hadoop2.7/python/pyspark/sql/context.py spark-2.4.4-bin-hadoop2.7/python/pyspark/sql/window.py spark-2.4.4-bin-hadoop2.7/python/pyspark/sql/utils.py spark-2.4.4-bin-hadoop2.7/python/pyspark/sql/udf.py spark-2.4.4-bin-hadoop2.7/python/pyspark/sql/types.py spark-2.4.4-bin-hadoop2.7/python/pyspark/sql/group.py spark-2.4.4-bin-hadoop2.7/python/pyspark/sql/conf.py spark-2.4.4-bin-hadoop2.7/python/pyspark/sql/column.py spark-2.4.4-bin-hadoop2.7/python/pyspark/sql/catalog.py spark-2.4.4-bin-hadoop2.7/python/pyspark/sql/__init__.py spark-2.4.4-bin-hadoop2.7/python/pyspark/shell.py spark-2.4.4-bin-hadoop2.7/python/pyspark/resultiterable.py spark-2.4.4-bin-hadoop2.7/python/pyspark/rddsampler.py spark-2.4.4-bin-hadoop2.7/python/pyspark/mllib/ spark-2.4.4-bin-hadoop2.7/python/pyspark/mllib/util.py spark-2.4.4-bin-hadoop2.7/python/pyspark/mllib/tree.py spark-2.4.4-bin-hadoop2.7/python/pyspark/mllib/tests.py spark-2.4.4-bin-hadoop2.7/python/pyspark/mllib/regression.py spark-2.4.4-bin-hadoop2.7/python/pyspark/mllib/recommendation.py spark-2.4.4-bin-hadoop2.7/python/pyspark/mllib/random.py spark-2.4.4-bin-hadoop2.7/python/pyspark/mllib/fpm.py spark-2.4.4-bin-hadoop2.7/python/pyspark/mllib/feature.py spark-2.4.4-bin-hadoop2.7/python/pyspark/mllib/evaluation.py spark-2.4.4-bin-hadoop2.7/python/pyspark/mllib/clustering.py spark-2.4.4-bin-hadoop2.7/python/pyspark/mllib/classification.py spark-2.4.4-bin-hadoop2.7/python/pyspark/mllib/stat/ spark-2.4.4-bin-hadoop2.7/python/pyspark/mllib/stat/_statistics.py spark-2.4.4-bin-hadoop2.7/python/pyspark/mllib/stat/test.py spark-2.4.4-bin-hadoop2.7/python/pyspark/mllib/stat/distribution.py spark-2.4.4-bin-hadoop2.7/python/pyspark/mllib/stat/__init__.py spark-2.4.4-bin-hadoop2.7/python/pyspark/mllib/stat/KernelDensity.py spark-2.4.4-bin-hadoop2.7/python/pyspark/mllib/linalg/ spark-2.4.4-bin-hadoop2.7/python/pyspark/mllib/linalg/distributed.py spark-2.4.4-bin-hadoop2.7/python/pyspark/mllib/linalg/__init__.py spark-2.4.4-bin-hadoop2.7/python/pyspark/mllib/common.py spark-2.4.4-bin-hadoop2.7/python/pyspark/mllib/__init__.py spark-2.4.4-bin-hadoop2.7/python/pyspark/ml/ spark-2.4.4-bin-hadoop2.7/python/pyspark/ml/wrapper.py spark-2.4.4-bin-hadoop2.7/python/pyspark/ml/util.py spark-2.4.4-bin-hadoop2.7/python/pyspark/ml/tuning.py spark-2.4.4-bin-hadoop2.7/python/pyspark/ml/tests.py spark-2.4.4-bin-hadoop2.7/python/pyspark/ml/regression.py spark-2.4.4-bin-hadoop2.7/python/pyspark/ml/recommendation.py spark-2.4.4-bin-hadoop2.7/python/pyspark/ml/image.py spark-2.4.4-bin-hadoop2.7/python/pyspark/ml/fpm.py spark-2.4.4-bin-hadoop2.7/python/pyspark/ml/feature.py spark-2.4.4-bin-hadoop2.7/python/pyspark/ml/evaluation.py spark-2.4.4-bin-hadoop2.7/python/pyspark/ml/clustering.py spark-2.4.4-bin-hadoop2.7/python/pyspark/ml/classification.py spark-2.4.4-bin-hadoop2.7/python/pyspark/ml/stat.py spark-2.4.4-bin-hadoop2.7/python/pyspark/ml/pipeline.py spark-2.4.4-bin-hadoop2.7/python/pyspark/ml/param/ spark-2.4.4-bin-hadoop2.7/python/pyspark/ml/param/shared.py spark-2.4.4-bin-hadoop2.7/python/pyspark/ml/param/_shared_params_code_gen.py spark-2.4.4-bin-hadoop2.7/python/pyspark/ml/param/__init__.py spark-2.4.4-bin-hadoop2.7/python/pyspark/ml/linalg/ spark-2.4.4-bin-hadoop2.7/python/pyspark/ml/linalg/__init__.py spark-2.4.4-bin-hadoop2.7/python/pyspark/ml/common.py spark-2.4.4-bin-hadoop2.7/python/pyspark/ml/base.py spark-2.4.4-bin-hadoop2.7/python/pyspark/ml/__init__.py spark-2.4.4-bin-hadoop2.7/python/pyspark/join.py spark-2.4.4-bin-hadoop2.7/python/pyspark/heapq3.py spark-2.4.4-bin-hadoop2.7/python/pyspark/find_spark_home.py spark-2.4.4-bin-hadoop2.7/python/pyspark/_globals.py spark-2.4.4-bin-hadoop2.7/python/pylintrc spark-2.4.4-bin-hadoop2.7/python/lib/ spark-2.4.4-bin-hadoop2.7/python/lib/pyspark.zip spark-2.4.4-bin-hadoop2.7/python/lib/py4j-0.10.7-src.zip spark-2.4.4-bin-hadoop2.7/python/lib/PY4J_LICENSE.txt spark-2.4.4-bin-hadoop2.7/python/docs/ spark-2.4.4-bin-hadoop2.7/python/docs/pyspark.streaming.rst spark-2.4.4-bin-hadoop2.7/python/docs/pyspark.sql.rst spark-2.4.4-bin-hadoop2.7/python/docs/epytext.py spark-2.4.4-bin-hadoop2.7/python/docs/conf.py spark-2.4.4-bin-hadoop2.7/python/docs/Makefile spark-2.4.4-bin-hadoop2.7/python/docs/pyspark.rst spark-2.4.4-bin-hadoop2.7/python/docs/pyspark.mllib.rst spark-2.4.4-bin-hadoop2.7/python/docs/pyspark.ml.rst spark-2.4.4-bin-hadoop2.7/python/docs/make2.bat spark-2.4.4-bin-hadoop2.7/python/docs/make.bat spark-2.4.4-bin-hadoop2.7/python/docs/index.rst spark-2.4.4-bin-hadoop2.7/python/docs/_templates/ spark-2.4.4-bin-hadoop2.7/python/docs/_templates/layout.html spark-2.4.4-bin-hadoop2.7/python/docs/_static/ spark-2.4.4-bin-hadoop2.7/python/docs/_static/pyspark.js spark-2.4.4-bin-hadoop2.7/python/docs/_static/pyspark.css spark-2.4.4-bin-hadoop2.7/python/.gitignore spark-2.4.4-bin-hadoop2.7/python/.coveragerc spark-2.4.4-bin-hadoop2.7/bin/ spark-2.4.4-bin-hadoop2.7/bin/spark-class spark-2.4.4-bin-hadoop2.7/bin/pyspark2.cmd spark-2.4.4-bin-hadoop2.7/bin/pyspark spark-2.4.4-bin-hadoop2.7/bin/load-spark-env.sh spark-2.4.4-bin-hadoop2.7/bin/load-spark-env.cmd spark-2.4.4-bin-hadoop2.7/bin/docker-image-tool.sh spark-2.4.4-bin-hadoop2.7/bin/sparkR2.cmd spark-2.4.4-bin-hadoop2.7/bin/sparkR.cmd spark-2.4.4-bin-hadoop2.7/bin/sparkR spark-2.4.4-bin-hadoop2.7/bin/spark-submit2.cmd spark-2.4.4-bin-hadoop2.7/bin/spark-submit.cmd spark-2.4.4-bin-hadoop2.7/bin/spark-submit spark-2.4.4-bin-hadoop2.7/bin/spark-sql2.cmd spark-2.4.4-bin-hadoop2.7/bin/spark-sql.cmd spark-2.4.4-bin-hadoop2.7/bin/spark-sql spark-2.4.4-bin-hadoop2.7/bin/spark-shell2.cmd spark-2.4.4-bin-hadoop2.7/bin/spark-shell.cmd spark-2.4.4-bin-hadoop2.7/bin/spark-shell spark-2.4.4-bin-hadoop2.7/bin/spark-class2.cmd spark-2.4.4-bin-hadoop2.7/bin/spark-class.cmd spark-2.4.4-bin-hadoop2.7/bin/run-example.cmd spark-2.4.4-bin-hadoop2.7/bin/run-example spark-2.4.4-bin-hadoop2.7/bin/pyspark.cmd spark-2.4.4-bin-hadoop2.7/bin/find-spark-home.cmd spark-2.4.4-bin-hadoop2.7/bin/find-spark-home spark-2.4.4-bin-hadoop2.7/bin/beeline.cmd spark-2.4.4-bin-hadoop2.7/bin/beeline spark-2.4.4-bin-hadoop2.7/README.md spark-2.4.4-bin-hadoop2.7/conf/ spark-2.4.4-bin-hadoop2.7/conf/spark-env.sh.template spark-2.4.4-bin-hadoop2.7/conf/spark-defaults.conf.template spark-2.4.4-bin-hadoop2.7/conf/slaves.template spark-2.4.4-bin-hadoop2.7/conf/metrics.properties.template spark-2.4.4-bin-hadoop2.7/conf/log4j.properties.template spark-2.4.4-bin-hadoop2.7/conf/fairscheduler.xml.template spark-2.4.4-bin-hadoop2.7/conf/docker.properties.template spark-2.4.4-bin-hadoop2.7/data/ spark-2.4.4-bin-hadoop2.7/data/mllib/ spark-2.4.4-bin-hadoop2.7/data/mllib/gmm_data.txt spark-2.4.4-bin-hadoop2.7/data/mllib/als/ spark-2.4.4-bin-hadoop2.7/data/mllib/als/test.data spark-2.4.4-bin-hadoop2.7/data/mllib/als/sample_movielens_ratings.txt spark-2.4.4-bin-hadoop2.7/data/mllib/streaming_kmeans_data_test.txt spark-2.4.4-bin-hadoop2.7/data/mllib/sample_svm_data.txt spark-2.4.4-bin-hadoop2.7/data/mllib/sample_multiclass_classification_data.txt spark-2.4.4-bin-hadoop2.7/data/mllib/sample_movielens_data.txt spark-2.4.4-bin-hadoop2.7/data/mllib/sample_linear_regression_data.txt spark-2.4.4-bin-hadoop2.7/data/mllib/sample_libsvm_data.txt spark-2.4.4-bin-hadoop2.7/data/mllib/sample_lda_libsvm_data.txt spark-2.4.4-bin-hadoop2.7/data/mllib/sample_lda_data.txt spark-2.4.4-bin-hadoop2.7/data/mllib/sample_kmeans_data.txt spark-2.4.4-bin-hadoop2.7/data/mllib/sample_isotonic_regression_libsvm_data.txt spark-2.4.4-bin-hadoop2.7/data/mllib/sample_fpgrowth.txt spark-2.4.4-bin-hadoop2.7/data/mllib/sample_binary_classification_data.txt spark-2.4.4-bin-hadoop2.7/data/mllib/ridge-data/ spark-2.4.4-bin-hadoop2.7/data/mllib/ridge-data/lpsa.data spark-2.4.4-bin-hadoop2.7/data/mllib/pic_data.txt spark-2.4.4-bin-hadoop2.7/data/mllib/pagerank_data.txt spark-2.4.4-bin-hadoop2.7/data/mllib/kmeans_data.txt spark-2.4.4-bin-hadoop2.7/data/mllib/iris_libsvm.txt spark-2.4.4-bin-hadoop2.7/data/mllib/images/ spark-2.4.4-bin-hadoop2.7/data/mllib/images/partitioned/ spark-2.4.4-bin-hadoop2.7/data/mllib/images/partitioned/cls=multichannel/ spark-2.4.4-bin-hadoop2.7/data/mllib/images/partitioned/cls=multichannel/date=2018-02/ spark-2.4.4-bin-hadoop2.7/data/mllib/images/partitioned/cls=multichannel/date=2018-02/grayscale.jpg spark-2.4.4-bin-hadoop2.7/data/mllib/images/partitioned/cls=multichannel/date=2018-02/chr30.4.184.jpg spark-2.4.4-bin-hadoop2.7/data/mllib/images/partitioned/cls=multichannel/date=2018-01/ spark-2.4.4-bin-hadoop2.7/data/mllib/images/partitioned/cls=multichannel/date=2018-01/BGRA_alpha_60.png spark-2.4.4-bin-hadoop2.7/data/mllib/images/partitioned/cls=multichannel/date=2018-01/BGRA.png spark-2.4.4-bin-hadoop2.7/data/mllib/images/partitioned/cls=kittens/ spark-2.4.4-bin-hadoop2.7/data/mllib/images/partitioned/cls=kittens/date=2018-02/ spark-2.4.4-bin-hadoop2.7/data/mllib/images/partitioned/cls=kittens/date=2018-02/DP802813.jpg spark-2.4.4-bin-hadoop2.7/data/mllib/images/partitioned/cls=kittens/date=2018-02/DP153539.jpg spark-2.4.4-bin-hadoop2.7/data/mllib/images/partitioned/cls=kittens/date=2018-02/54893.jpg spark-2.4.4-bin-hadoop2.7/data/mllib/images/partitioned/cls=kittens/date=2018-01/ spark-2.4.4-bin-hadoop2.7/data/mllib/images/partitioned/cls=kittens/date=2018-01/not-image.txt spark-2.4.4-bin-hadoop2.7/data/mllib/images/partitioned/cls=kittens/date=2018-01/29.5.a_b_EGDP022204.jpg spark-2.4.4-bin-hadoop2.7/data/mllib/images/origin/ spark-2.4.4-bin-hadoop2.7/data/mllib/images/origin/multi-channel/ spark-2.4.4-bin-hadoop2.7/data/mllib/images/origin/multi-channel/grayscale.jpg spark-2.4.4-bin-hadoop2.7/data/mllib/images/origin/multi-channel/chr30.4.184.jpg spark-2.4.4-bin-hadoop2.7/data/mllib/images/origin/multi-channel/BGRA_alpha_60.png spark-2.4.4-bin-hadoop2.7/data/mllib/images/origin/multi-channel/BGRA.png spark-2.4.4-bin-hadoop2.7/data/mllib/images/origin/license.txt spark-2.4.4-bin-hadoop2.7/data/mllib/images/origin/kittens/ spark-2.4.4-bin-hadoop2.7/data/mllib/images/origin/kittens/not-image.txt spark-2.4.4-bin-hadoop2.7/data/mllib/images/origin/kittens/DP802813.jpg spark-2.4.4-bin-hadoop2.7/data/mllib/images/origin/kittens/DP153539.jpg spark-2.4.4-bin-hadoop2.7/data/mllib/images/origin/kittens/54893.jpg spark-2.4.4-bin-hadoop2.7/data/mllib/images/origin/kittens/29.5.a_b_EGDP022204.jpg spark-2.4.4-bin-hadoop2.7/data/mllib/images/license.txt spark-2.4.4-bin-hadoop2.7/data/graphx/ spark-2.4.4-bin-hadoop2.7/data/graphx/users.txt spark-2.4.4-bin-hadoop2.7/data/graphx/followers.txt spark-2.4.4-bin-hadoop2.7/data/streaming/ spark-2.4.4-bin-hadoop2.7/data/streaming/AFINN-111.txt spark-2.4.4-bin-hadoop2.7/NOTICE spark-2.4.4-bin-hadoop2.7/licenses/ spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-jtransforms.html spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-json-formatter.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-jquery.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-join.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-jodd.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-jline.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-javolution.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-javassist.html spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-janino.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-heapq.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-graphlib-dot.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-f2j.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-datatables.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-dagre-d3.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-d3.min.js.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-cloudpickle.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-bootstrap.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-automaton.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-arpack.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-antlr.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-CC0.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-AnchorJS.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-zstd.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-zstd-jni.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-xmlenc.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-vis.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-spire.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-sorttable.js.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-slf4j.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-scopt.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-scala.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-sbt-launch-lib.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-respond.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-reflectasm.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-pyrolite.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-py4j.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-protobuf.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-pmml-model.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-paranamer.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-netlib.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-mustache.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-modernizr.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-minlog.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-matchMedia-polyfill.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-machinist.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-leveldbjni.txt spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-kryo.txt spark-2.4.4-bin-hadoop2.7/LICENSE spark-2.4.4-bin-hadoop2.7/examples/ spark-2.4.4-bin-hadoop2.7/examples/src/ spark-2.4.4-bin-hadoop2.7/examples/src/main/ spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/ spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/ spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/ spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/ spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/ spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/ElementwiseProductExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/DenseKMeans.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/DecisionTreeRegressionExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/DecisionTreeClassificationExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/CosineSimilarity.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/CorrelationsExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/Correlations.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/ChiSqSelectorExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/BisectingKMeansExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/BinaryClassificationMetricsExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/AssociationRulesExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/AbstractParams.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/Word2VecExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/TallSkinnySVD.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/TallSkinnyPCA.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/TFIDFExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/SummaryStatisticsExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/StreamingTestExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/StreamingLogisticRegression.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/StreamingLinearRegressionExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/StreamingKMeansExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/StratifiedSamplingExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/StandardScalerExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/SparseNaiveBayes.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/SimpleFPGrowth.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/SampledRDDs.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/SVMWithSGDExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/SVDExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/RegressionMetricsExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/RecommendationExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/RandomRDDGeneration.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/RandomForestRegressionExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/RandomForestClassificationExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/PrefixSpanExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/PowerIterationClusteringExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/PMMLModelExportExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/PCAOnSourceVectorExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/PCAOnRowMatrixExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/PCAExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/NormalizerExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/NaiveBayesExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/MultivariateSummarizer.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/MulticlassMetricsExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/MultiLabelMetricsExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/LogisticRegressionWithLBFGSExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/LinearRegressionWithSGDExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/LatentDirichletAllocationExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/LDAExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/LBFGSExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/KernelDensityEstimationExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/KMeansExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/IsotonicRegressionExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/HypothesisTestingKolmogorovSmirnovTestExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/HypothesisTestingExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/GradientBoostingRegressionExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/GradientBoostingClassificationExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/GaussianMixtureExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/FPGrowthExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/RankingMetricsExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/MovieLensALS.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/LinearRegression.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/GradientBoostedTreesRunner.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/DecisionTreeRunner.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/BinaryClassification.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/ spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/Word2VecExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/VectorSlicerExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/VectorSizeHintExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/VectorIndexerExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/VectorAssemblerExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/UnaryTransformerExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/TokenizerExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/TfIdfExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/SummarizerExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/StringIndexerExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/StopWordsRemoverExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/StandardScalerExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/SQLTransformerExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/RandomForestRegressorExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/RandomForestExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/RFormulaExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/QuantileDiscretizerExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/PowerIterationClusteringExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/PolynomialExpansionExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/PipelineExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/PCAExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/OneVsRestExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/NormalizerExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/NaiveBayesExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/NGramExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/MultilayerPerceptronClassifierExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/MulticlassLogisticRegressionWithElasticNetExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/ModelSelectionViaTrainValidationSplitExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/ModelSelectionViaCrossValidationExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/MinMaxScalerExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/MinHashLSHExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/MaxAbsScalerExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/LogisticRegressionWithElasticNetExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/LogisticRegressionSummaryExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/LogisticRegressionExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/LinearSVCExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/LinearRegressionWithElasticNetExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/LinearRegressionExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/LDAExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/KMeansExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/IsotonicRegressionExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/InteractionExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/IndexToStringExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/ImputerExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/GradientBoostedTreeRegressorExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/GeneralizedLinearRegressionExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/GaussianMixtureExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/GBTExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/FeatureHasherExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/EstimatorTransformerParamExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/ElementwiseProductExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/DeveloperApiExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/DecisionTreeRegressionExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/DecisionTreeExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/DataFrameExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/DCTExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/CountVectorizerExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/CorrelationExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/ChiSquareTestExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/ChiSqSelectorExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/BucketizerExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/BucketedRandomProjectionLSHExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/BinarizerExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/ALSExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/AFTSurvivalRegressionExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/RandomForestClassifierExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/PrefixSpanExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/OneHotEncoderEstimatorExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/GradientBoostedTreeClassifierExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/FPGrowthExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/DecisionTreeClassificationExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/BisectingKMeansExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/graphx/ spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/graphx/TriangleCountingExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/graphx/SynthBenchmark.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/graphx/SSSPExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/graphx/PageRankExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/graphx/LiveJournalPageRank.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/graphx/ConnectedComponentsExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/graphx/ComprehensiveExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/graphx/Analytics.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/graphx/AggregateMessagesExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/SparkTC.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/SparkRemoteFileTest.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/SparkPi.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/SparkPageRank.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/SparkLR.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/SparkKMeans.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/SparkHdfsLR.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/SparkALS.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/SkewedGroupByTest.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/SimpleSkewedGroupByTest.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/MultiBroadcastTest.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/LocalPi.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/LocalLR.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/LocalKMeans.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/LocalFileLR.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/LocalALS.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/GroupByTest.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ExceptionHandlingTest.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/DriverSubmissionTest.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/BroadcastTest.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/streaming/ spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/streaming/clickstream/ spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/streaming/clickstream/PageViewStream.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/streaming/clickstream/PageViewGenerator.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/streaming/StreamingExamples.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/streaming/StatefulNetworkWordCount.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/streaming/SqlNetworkWordCount.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/streaming/RecoverableNetworkWordCount.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/streaming/RawNetworkGrep.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/streaming/QueueStream.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/streaming/NetworkWordCount.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/streaming/HdfsWordCount.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/streaming/DirectKafkaWordCount.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/streaming/CustomReceiver.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/sql/ spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/sql/streaming/ spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/sql/streaming/StructuredSessionization.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/sql/streaming/StructuredNetworkWordCountWindowed.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/sql/streaming/StructuredNetworkWordCount.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/sql/streaming/StructuredKafkaWordCount.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/sql/hive/ spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/sql/hive/SparkHiveExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/sql/UserDefinedUntypedAggregation.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/sql/UserDefinedTypedAggregation.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/sql/RDDRelation.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/sql/SparkSQLExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/sql/SQLDataSourceExample.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/pythonconverters/ spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/pythonconverters/AvroConverters.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/LogQuery.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/HdfsTest.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/DFSReadWriteTest.scala spark-2.4.4-bin-hadoop2.7/examples/src/main/resources/ spark-2.4.4-bin-hadoop2.7/examples/src/main/resources/users.parquet spark-2.4.4-bin-hadoop2.7/examples/src/main/resources/users.orc spark-2.4.4-bin-hadoop2.7/examples/src/main/resources/users.avro spark-2.4.4-bin-hadoop2.7/examples/src/main/resources/user.avsc spark-2.4.4-bin-hadoop2.7/examples/src/main/resources/people.txt spark-2.4.4-bin-hadoop2.7/examples/src/main/resources/people.json spark-2.4.4-bin-hadoop2.7/examples/src/main/resources/people.csv spark-2.4.4-bin-hadoop2.7/examples/src/main/resources/kv1.txt spark-2.4.4-bin-hadoop2.7/examples/src/main/resources/full_user.avsc spark-2.4.4-bin-hadoop2.7/examples/src/main/resources/employees.json spark-2.4.4-bin-hadoop2.7/examples/src/main/r/ spark-2.4.4-bin-hadoop2.7/examples/src/main/r/streaming/ spark-2.4.4-bin-hadoop2.7/examples/src/main/r/streaming/structured_network_wordcount.R spark-2.4.4-bin-hadoop2.7/examples/src/main/r/ml/ spark-2.4.4-bin-hadoop2.7/examples/src/main/r/ml/svmLinear.R spark-2.4.4-bin-hadoop2.7/examples/src/main/r/ml/survreg.R spark-2.4.4-bin-hadoop2.7/examples/src/main/r/ml/randomForest.R spark-2.4.4-bin-hadoop2.7/examples/src/main/r/ml/naiveBayes.R spark-2.4.4-bin-hadoop2.7/examples/src/main/r/ml/mlp.R spark-2.4.4-bin-hadoop2.7/examples/src/main/r/ml/ml.R spark-2.4.4-bin-hadoop2.7/examples/src/main/r/ml/logit.R spark-2.4.4-bin-hadoop2.7/examples/src/main/r/ml/lda.R spark-2.4.4-bin-hadoop2.7/examples/src/main/r/ml/kstest.R spark-2.4.4-bin-hadoop2.7/examples/src/main/r/ml/kmeans.R spark-2.4.4-bin-hadoop2.7/examples/src/main/r/ml/isoreg.R spark-2.4.4-bin-hadoop2.7/examples/src/main/r/ml/glm.R spark-2.4.4-bin-hadoop2.7/examples/src/main/r/ml/gbt.R spark-2.4.4-bin-hadoop2.7/examples/src/main/r/ml/gaussianMixture.R spark-2.4.4-bin-hadoop2.7/examples/src/main/r/ml/fpm.R spark-2.4.4-bin-hadoop2.7/examples/src/main/r/ml/decisionTree.R spark-2.4.4-bin-hadoop2.7/examples/src/main/r/ml/bisectingKmeans.R spark-2.4.4-bin-hadoop2.7/examples/src/main/r/ml/als.R spark-2.4.4-bin-hadoop2.7/examples/src/main/r/dataframe.R spark-2.4.4-bin-hadoop2.7/examples/src/main/r/data-manipulation.R spark-2.4.4-bin-hadoop2.7/examples/src/main/r/RSparkSQLExample.R spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ spark-2.4.4-bin-hadoop2.7/examples/src/main/python/wordcount.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/transitive_closure.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/streaming/ spark-2.4.4-bin-hadoop2.7/examples/src/main/python/streaming/stateful_network_wordcount.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/streaming/sql_network_wordcount.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/streaming/queue_stream.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/streaming/network_wordjoinsentiments.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/streaming/network_wordcount.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/streaming/hdfs_wordcount.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/streaming/recoverable_network_wordcount.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/streaming/kafka_wordcount.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/streaming/flume_wordcount.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/streaming/direct_kafka_wordcount.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/status_api_demo.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/sql/ spark-2.4.4-bin-hadoop2.7/examples/src/main/python/sql/streaming/ spark-2.4.4-bin-hadoop2.7/examples/src/main/python/sql/streaming/structured_network_wordcount_windowed.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/sql/streaming/structured_network_wordcount.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/sql/streaming/structured_kafka_wordcount.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/sql/basic.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/sql/hive.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/sql/datasource.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/sql/arrow.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/sort.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/pi.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/parquet_inputformat.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/pagerank.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/ spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/word2vec_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/word2vec.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/tf_idf_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/svm_with_sgd_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/svd_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/summary_statistics_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/streaming_linear_regression_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/streaming_k_means_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/stratified_sampling_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/sampled_rdds.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/regression_metrics_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/recommendation_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/random_rdd_generation.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/random_forest_regression_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/random_forest_classification_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/power_iteration_clustering_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/pca_rowmatrix_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/normalizer_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/naive_bayes_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/multi_label_metrics_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/logistic_regression_with_lbfgs_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/logistic_regression.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/linear_regression_with_sgd_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/latent_dirichlet_allocation_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/kmeans.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/kernel_density_estimation_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/k_means_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/hypothesis_testing_kolmogorov_smirnov_test_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/hypothesis_testing_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/gradient_boosting_regression_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/gradient_boosting_classification_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/gaussian_mixture_model.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/gaussian_mixture_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/fpgrowth_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/elementwise_product_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/decision_tree_regression_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/decision_tree_classification_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/correlations_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/correlations.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/binary_classification_metrics_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/standard_scaler_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/ranking_metrics_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/multi_class_metrics_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/isotonic_regression_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/bisecting_k_means_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/ spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/word2vec_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/vector_slicer_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/vector_size_hint_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/vector_indexer_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/vector_assembler_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/train_validation_split.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/tokenizer_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/tf_idf_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/summarizer_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/string_indexer_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/stopwords_remover_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/standard_scaler_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/sql_transformer.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/rformula_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/random_forest_regressor_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/random_forest_classifier_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/quantile_discretizer_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/prefixspan_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/polynomial_expansion_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/pipeline_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/pca_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/one_vs_rest_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/normalizer_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/naive_bayes_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/n_gram_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/multilayer_perceptron_classification.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/multiclass_logistic_regression_with_elastic_net.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/min_max_scaler_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/min_hash_lsh_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/max_abs_scaler_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/logistic_regression_with_elastic_net.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/logistic_regression_summary_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/linearsvc.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/linear_regression_with_elastic_net.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/lda_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/kmeans_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/isotonic_regression_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/index_to_string_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/imputer_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/gradient_boosted_tree_regressor_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/gradient_boosted_tree_classifier_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/generalized_linear_regression_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/gaussian_mixture_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/fpgrowth_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/feature_hasher_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/estimator_transformer_param_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/elementwise_product_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/decision_tree_regression_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/decision_tree_classification_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/dct_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/dataframe_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/cross_validator.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/count_vectorizer_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/correlation_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/chisq_selector_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/chi_square_test_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/bucketizer_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/bucketed_random_projection_lsh_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/binarizer_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/als_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/aft_survival_regression.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/onehot_encoder_estimator_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/bisecting_k_means_example.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/logistic_regression.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/kmeans.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/avro_inputformat.py spark-2.4.4-bin-hadoop2.7/examples/src/main/python/als.py spark-2.4.4-bin-hadoop2.7/examples/src/main/java/ spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/ spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/ spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/ spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/streaming/ spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/streaming/JavaStatefulNetworkWordCount.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/streaming/JavaSqlNetworkWordCount.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/streaming/JavaRecoverableNetworkWordCount.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/streaming/JavaRecord.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/streaming/JavaQueueStream.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/streaming/JavaNetworkWordCount.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/streaming/JavaDirectKafkaWordCount.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/streaming/JavaCustomReceiver.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/sql/ spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/sql/streaming/ spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/sql/streaming/JavaStructuredNetworkWordCountWindowed.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/sql/streaming/JavaStructuredNetworkWordCount.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/sql/streaming/JavaStructuredKafkaWordCount.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/sql/streaming/JavaStructuredSessionization.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/sql/hive/ spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/sql/hive/JavaSparkHiveExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/sql/JavaUserDefinedUntypedAggregation.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/sql/JavaUserDefinedTypedAggregation.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/sql/JavaSparkSQLExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/sql/JavaSQLDataSourceExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/ spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaSummaryStatisticsExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaStreamingTestExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaStratifiedSamplingExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaSimpleFPGrowth.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaSVMWithSGDExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaSVDExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaRegressionMetricsExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaRecommendationExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaRandomForestRegressionExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaPrefixSpanExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaPowerIterationClusteringExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaPCAExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaNaiveBayesExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaMulticlassClassificationMetricsExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaMultiLabelClassificationMetricsExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaLogisticRegressionWithLBFGSExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaLinearRegressionWithSGDExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaLatentDirichletAllocationExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaLBFGSExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaKernelDensityEstimationExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaKMeansExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaIsotonicRegressionExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaHypothesisTestingKolmogorovSmirnovTestExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaHypothesisTestingExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaGradientBoostingRegressionExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaGradientBoostingClassificationExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaGaussianMixtureExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaElementwiseProductExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaDecisionTreeRegressionExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaDecisionTreeClassificationExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaChiSqSelectorExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaBisectingKMeansExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaBinaryClassificationMetricsExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaAssociationRulesExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaALS.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaRankingMetricsExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaRandomForestClassificationExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaCorrelationsExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/ spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaWord2VecExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaVectorSlicerExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaVectorSizeHintExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaVectorIndexerExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaVectorAssemblerExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaTokenizerExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaTfIdfExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaSummarizerExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaStringIndexerExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaStopWordsRemoverExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaStandardScalerExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaSQLTransformerExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaRandomForestRegressorExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaRFormulaExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaQuantileDiscretizerExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaPowerIterationClusteringExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaPolynomialExpansionExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaPipelineExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaPCAExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaOneVsRestExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaNormalizerExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaNaiveBayesExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaNGramExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaMultilayerPerceptronClassifierExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaMulticlassLogisticRegressionWithElasticNetExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaModelSelectionViaTrainValidationSplitExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaModelSelectionViaCrossValidationExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaMinMaxScalerExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaMinHashLSHExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaMaxAbsScalerExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaLogisticRegressionWithElasticNetExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaLogisticRegressionSummaryExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaLinearSVCExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaLinearRegressionWithElasticNetExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaLabeledDocument.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaLDAExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaKMeansExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaIsotonicRegressionExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaInteractionExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaIndexToStringExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaImputerExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaGradientBoostedTreeRegressorExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaGeneralizedLinearRegressionExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaGaussianMixtureExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaFeatureHasherExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaFPGrowthExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaEstimatorTransformerParamExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaElementwiseProductExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaDocument.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaDecisionTreeRegressionExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaDCTExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaCountVectorizerExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaCorrelationExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaChiSquareTestExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaChiSqSelectorExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaBucketizerExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaBucketedRandomProjectionLSHExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaBinarizerExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaAFTSurvivalRegressionExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaRandomForestClassifierExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaPrefixSpanExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaOneHotEncoderEstimatorExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaGradientBoostedTreeClassifierExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaDecisionTreeClassificationExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaBisectingKMeansExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaALSExample.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/JavaWordCount.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/JavaStatusTrackerDemo.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/JavaSparkPi.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/JavaPageRank.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/JavaLogQuery.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/JavaHdfsLR.java spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/JavaTC.java spark-2.4.4-bin-hadoop2.7/examples/jars/ spark-2.4.4-bin-hadoop2.7/examples/jars/spark-examples_2.11-2.4.4.jar spark-2.4.4-bin-hadoop2.7/examples/jars/scopt_2.11-3.7.0.jar spark-2.4.4-bin-hadoop2.7/kubernetes/ spark-2.4.4-bin-hadoop2.7/kubernetes/tests/ spark-2.4.4-bin-hadoop2.7/kubernetes/tests/pyfiles.py spark-2.4.4-bin-hadoop2.7/kubernetes/tests/worker_memory_check.py spark-2.4.4-bin-hadoop2.7/kubernetes/tests/py_container_checks.py spark-2.4.4-bin-hadoop2.7/kubernetes/dockerfiles/ spark-2.4.4-bin-hadoop2.7/kubernetes/dockerfiles/spark/ spark-2.4.4-bin-hadoop2.7/kubernetes/dockerfiles/spark/entrypoint.sh spark-2.4.4-bin-hadoop2.7/kubernetes/dockerfiles/spark/Dockerfile spark-2.4.4-bin-hadoop2.7/kubernetes/dockerfiles/spark/bindings/ spark-2.4.4-bin-hadoop2.7/kubernetes/dockerfiles/spark/bindings/python/ spark-2.4.4-bin-hadoop2.7/kubernetes/dockerfiles/spark/bindings/python/Dockerfile spark-2.4.4-bin-hadoop2.7/kubernetes/dockerfiles/spark/bindings/R/ spark-2.4.4-bin-hadoop2.7/kubernetes/dockerfiles/spark/bindings/R/Dockerfile spark-2.4.4-bin-hadoop2.7/yarn/ spark-2.4.4-bin-hadoop2.7/yarn/spark-2.4.4-yarn-shuffle.jar spark-2.4.4-bin-hadoop2.7/jars/ spark-2.4.4-bin-hadoop2.7/jars/jackson-mapper-asl-1.9.13.jar spark-2.4.4-bin-hadoop2.7/jars/jackson-jaxrs-1.9.13.jar spark-2.4.4-bin-hadoop2.7/jars/jackson-dataformat-yaml-2.6.7.jar spark-2.4.4-bin-hadoop2.7/jars/jackson-databind-2.6.7.1.jar spark-2.4.4-bin-hadoop2.7/jars/jackson-core-asl-1.9.13.jar spark-2.4.4-bin-hadoop2.7/jars/jackson-core-2.6.7.jar spark-2.4.4-bin-hadoop2.7/jars/jackson-annotations-2.6.7.jar spark-2.4.4-bin-hadoop2.7/jars/ivy-2.4.0.jar spark-2.4.4-bin-hadoop2.7/jars/httpcore-4.4.10.jar spark-2.4.4-bin-hadoop2.7/jars/httpclient-4.5.6.jar spark-2.4.4-bin-hadoop2.7/jars/htrace-core-3.1.0-incubating.jar spark-2.4.4-bin-hadoop2.7/jars/hppc-0.7.2.jar spark-2.4.4-bin-hadoop2.7/jars/hk2-utils-2.4.0-b34.jar spark-2.4.4-bin-hadoop2.7/jars/hk2-locator-2.4.0-b34.jar spark-2.4.4-bin-hadoop2.7/jars/hk2-api-2.4.0-b34.jar spark-2.4.4-bin-hadoop2.7/jars/hive-metastore-1.2.1.spark2.jar spark-2.4.4-bin-hadoop2.7/jars/hive-jdbc-1.2.1.spark2.jar spark-2.4.4-bin-hadoop2.7/jars/hive-exec-1.2.1.spark2.jar spark-2.4.4-bin-hadoop2.7/jars/hive-cli-1.2.1.spark2.jar spark-2.4.4-bin-hadoop2.7/jars/hive-beeline-1.2.1.spark2.jar spark-2.4.4-bin-hadoop2.7/jars/hadoop-yarn-server-web-proxy-2.7.3.jar spark-2.4.4-bin-hadoop2.7/jars/hadoop-yarn-server-common-2.7.3.jar spark-2.4.4-bin-hadoop2.7/jars/hadoop-yarn-common-2.7.3.jar spark-2.4.4-bin-hadoop2.7/jars/hadoop-yarn-client-2.7.3.jar spark-2.4.4-bin-hadoop2.7/jars/hadoop-yarn-api-2.7.3.jar spark-2.4.4-bin-hadoop2.7/jars/hadoop-mapreduce-client-shuffle-2.7.3.jar spark-2.4.4-bin-hadoop2.7/jars/hadoop-mapreduce-client-jobclient-2.7.3.jar spark-2.4.4-bin-hadoop2.7/jars/hadoop-mapreduce-client-core-2.7.3.jar spark-2.4.4-bin-hadoop2.7/jars/hadoop-mapreduce-client-common-2.7.3.jar spark-2.4.4-bin-hadoop2.7/jars/hadoop-mapreduce-client-app-2.7.3.jar spark-2.4.4-bin-hadoop2.7/jars/hadoop-hdfs-2.7.3.jar spark-2.4.4-bin-hadoop2.7/jars/hadoop-common-2.7.3.jar spark-2.4.4-bin-hadoop2.7/jars/hadoop-client-2.7.3.jar spark-2.4.4-bin-hadoop2.7/jars/hadoop-auth-2.7.3.jar spark-2.4.4-bin-hadoop2.7/jars/hadoop-annotations-2.7.3.jar spark-2.4.4-bin-hadoop2.7/jars/guice-servlet-3.0.jar spark-2.4.4-bin-hadoop2.7/jars/guice-3.0.jar spark-2.4.4-bin-hadoop2.7/jars/guava-14.0.1.jar spark-2.4.4-bin-hadoop2.7/jars/gson-2.2.4.jar spark-2.4.4-bin-hadoop2.7/jars/generex-1.0.1.jar spark-2.4.4-bin-hadoop2.7/jars/flatbuffers-1.2.0-3f79e055.jar spark-2.4.4-bin-hadoop2.7/jars/eigenbase-properties-1.1.5.jar spark-2.4.4-bin-hadoop2.7/jars/derby-10.12.1.1.jar spark-2.4.4-bin-hadoop2.7/jars/datanucleus-rdbms-3.2.9.jar spark-2.4.4-bin-hadoop2.7/jars/datanucleus-core-3.2.10.jar spark-2.4.4-bin-hadoop2.7/jars/datanucleus-api-jdo-3.2.6.jar spark-2.4.4-bin-hadoop2.7/jars/curator-recipes-2.7.1.jar spark-2.4.4-bin-hadoop2.7/jars/curator-framework-2.7.1.jar spark-2.4.4-bin-hadoop2.7/jars/curator-client-2.7.1.jar spark-2.4.4-bin-hadoop2.7/jars/core-1.1.2.jar spark-2.4.4-bin-hadoop2.7/jars/compress-lzf-1.0.3.jar spark-2.4.4-bin-hadoop2.7/jars/commons-pool-1.5.4.jar spark-2.4.4-bin-hadoop2.7/jars/commons-net-3.1.jar spark-2.4.4-bin-hadoop2.7/jars/commons-math3-3.4.1.jar spark-2.4.4-bin-hadoop2.7/jars/commons-logging-1.1.3.jar spark-2.4.4-bin-hadoop2.7/jars/commons-lang3-3.5.jar spark-2.4.4-bin-hadoop2.7/jars/commons-lang-2.6.jar spark-2.4.4-bin-hadoop2.7/jars/commons-io-2.4.jar spark-2.4.4-bin-hadoop2.7/jars/commons-httpclient-3.1.jar spark-2.4.4-bin-hadoop2.7/jars/commons-digester-1.8.jar spark-2.4.4-bin-hadoop2.7/jars/commons-dbcp-1.4.jar spark-2.4.4-bin-hadoop2.7/jars/commons-crypto-1.0.0.jar spark-2.4.4-bin-hadoop2.7/jars/commons-configuration-1.6.jar spark-2.4.4-bin-hadoop2.7/jars/commons-compress-1.8.1.jar spark-2.4.4-bin-hadoop2.7/jars/commons-compiler-3.0.9.jar spark-2.4.4-bin-hadoop2.7/jars/commons-collections-3.2.2.jar spark-2.4.4-bin-hadoop2.7/jars/commons-codec-1.10.jar spark-2.4.4-bin-hadoop2.7/jars/commons-cli-1.2.jar spark-2.4.4-bin-hadoop2.7/jars/commons-beanutils-1.9.3.jar spark-2.4.4-bin-hadoop2.7/jars/chill_2.11-0.9.3.jar spark-2.4.4-bin-hadoop2.7/jars/chill-java-0.9.3.jar spark-2.4.4-bin-hadoop2.7/jars/calcite-linq4j-1.2.0-incubating.jar spark-2.4.4-bin-hadoop2.7/jars/calcite-core-1.2.0-incubating.jar spark-2.4.4-bin-hadoop2.7/jars/calcite-avatica-1.2.0-incubating.jar spark-2.4.4-bin-hadoop2.7/jars/breeze_2.11-0.13.2.jar spark-2.4.4-bin-hadoop2.7/jars/breeze-macros_2.11-0.13.2.jar spark-2.4.4-bin-