FailedConsole Output

Started by upstream project "ADAM-prb" build number 3080
originally caused by:
 GitHub pull request #2245 of commit 9a16079f5a139ff66e00e34273154a8fc202520b.
[EnvInject] - Loading node environment variables.
Building remotely on amp-jenkins-staging-worker-02 (ubuntu ubuntu-gpu ubuntu-avx2 staging-02 staging) in workspace /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu
Wiping out workspace first.
Cloning the remote Git repository
Cloning repository https://github.com/bigdatagenomics/adam.git
 > git init /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu # timeout=10
Fetching upstream changes from https://github.com/bigdatagenomics/adam.git
 > git --version # timeout=10
 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/heads/*:refs/remotes/origin/* # timeout=15
 > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10
 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10
 > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10
Fetching upstream changes from https://github.com/bigdatagenomics/adam.git
 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/*:refs/remotes/origin/pr/* # timeout=15
Checking out Revision 07e6b1a39af5863a6c67f63690416da161096882 (origin/pr/2245/head)
 > git config core.sparsecheckout # timeout=10
 > git checkout -f 07e6b1a39af5863a6c67f63690416da161096882
 > git rev-list 07e6b1a39af5863a6c67f63690416da161096882 # timeout=10
[ubuntu] $ /bin/bash /tmp/hudson7414442105857893301.sh
+ set -e
+ unset SPARK_TESTING
+ export JAVA_HOME=/usr/lib/jvm/java-8-oracle
+ JAVA_HOME=/usr/lib/jvm/java-8-oracle
+ export CONDA_BIN=/home/anaconda/bin/
+ CONDA_BIN=/home/anaconda/bin/
+ export PATH=/usr/lib/jvm/java-8-oracle/bin/:/home/anaconda/bin/:/home/jenkins/gems/bin:/usr/local/go/bin:/home/jenkins/go-projects/bin:/home/jenkins/anaconda2/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games
+ PATH=/usr/lib/jvm/java-8-oracle/bin/:/home/anaconda/bin/:/home/jenkins/gems/bin:/usr/local/go/bin:/home/jenkins/go-projects/bin:/home/jenkins/anaconda2/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games
+ set +x
+ /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/scripts/jenkins-test

# make a tempdir for writing maven cruft to
ADAM_MVN_TMP_DIR=$(mktemp -d -t adamTestMvnXXXXXXX)
mktemp -d -t adamTestMvnXXXXXXX
++ mktemp -d -t adamTestMvnXXXXXXX
+ ADAM_MVN_TMP_DIR=/tmp/adamTestMvnM5Ay7Lc

# add this tempdir to the poms...
find . -name pom.xml \
    -exec sed -i.bak \
    -e "s:sun.io.serialization.extendedDebugInfo=true:sun.io.serialization.extendedDebugInfo=true -Djava.io.tmpdir=${ADAM_MVN_TMP_DIR}:g" \
    {} \;
+ find . -name pom.xml -exec sed -i.bak -e 's:sun.io.serialization.extendedDebugInfo=true:sun.io.serialization.extendedDebugInfo=true -Djava.io.tmpdir=/tmp/adamTestMvnM5Ay7Lc:g' '{}' ';'
find . -name "*.bak" -exec rm -f {} \;
+ find . -name '*.bak' -exec rm -f '{}' ';'

# variable declarations
export PATH=${JAVA_HOME}/bin/:${PATH}
+ export PATH=/usr/lib/jvm/java-8-oracle/bin/:/usr/lib/jvm/java-8-oracle/bin/:/home/anaconda/bin/:/home/jenkins/gems/bin:/usr/local/go/bin:/home/jenkins/go-projects/bin:/home/jenkins/anaconda2/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games
+ PATH=/usr/lib/jvm/java-8-oracle/bin/:/usr/lib/jvm/java-8-oracle/bin/:/home/anaconda/bin/:/home/jenkins/gems/bin:/usr/local/go/bin:/home/jenkins/go-projects/bin:/home/jenkins/anaconda2/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games
export MAVEN_OPTS="-Xmx1536m -XX:MaxPermSize=1g -Dfile.encoding=utf-8"
+ export 'MAVEN_OPTS=-Xmx1536m -XX:MaxPermSize=1g -Dfile.encoding=utf-8'
+ MAVEN_OPTS='-Xmx1536m -XX:MaxPermSize=1g -Dfile.encoding=utf-8'
DIR=$( cd $( dirname ${BASH_SOURCE[0]} ) && pwd )
 cd $( dirname ${BASH_SOURCE[0]} ) && pwd 
 dirname ${BASH_SOURCE[0]} 
+++ dirname /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/scripts/jenkins-test
++ cd /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/scripts
++ pwd
+ DIR=/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/scripts
PROJECT_ROOT=${DIR}/..
+ PROJECT_ROOT=/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/scripts/..
VERSION=$(grep "<version>" ${PROJECT_ROOT}/pom.xml  | head -2 | tail -1 | sed 's/ *<version>//g' | sed 's/<\/version>//g')
grep "<version>" ${PROJECT_ROOT}/pom.xml  | head -2 | tail -1 | sed 's/ *<version>//g' | sed 's/<\/version>//g'
++ grep '<version>' /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/scripts/../pom.xml
++ head -2
++ sed 's/ *<version>//g'
++ tail -1
++ sed 's/<\/version>//g'
+ VERSION=0.30.0-SNAPSHOT

# is the hadoop version set?
if ! [[ ${HADOOP_VERSION} ]];
then
    echo "HADOOP_VERSION environment variable is not set."
    echo "Please set this variable before running."
    
    exit 1
fi
+ [[ -n 2.7.5 ]]

# is the spark version set?
if ! [[ ${SPARK_VERSION} ]];
then
    echo "SPARK_VERSION environment variable is not set."
    echo "Please set this variable before running."
    
    exit 1
fi
+ [[ -n 2.4.4 ]]

set -e
+ set -e

# build defaults to Scala 2.11
if [ ${SCALAVER} == 2.11 ];
then
    # shouldn't be able to move to scala 2.11 twice
    set +e
    ./scripts/move_to_scala_2.11.sh
    if [[ $? == 0 ]];
    then
        echo "We have already moved to Scala 2.11, so running move_to_scala_2.11.sh a second time should fail, but error code was 0 (success)."
        exit 1
    fi
    set -e
fi
+ '[' 2.11 == 2.11 ']'
+ set +e
+ ./scripts/move_to_scala_2.11.sh
Scala version is already set to 2.11 (Scala artifacts have _2.11 version suffix in artifact name).
Cowardly refusing to move to Scala 2.11 a second time...
+ [[ 1 == 0 ]]
+ set -e

# move to Scala 2.12 if requested
if [ ${SCALAVER} == 2.12 ];
then
    set +e
    ./scripts/move_to_scala_2.12.sh
    set -e
fi
+ '[' 2.11 == 2.12 ']'

# print versions
echo "Testing ADAM version ${VERSION} on Spark ${SPARK_VERSION} and Hadoop ${HADOOP_VERSION}"
+ echo 'Testing ADAM version 0.30.0-SNAPSHOT on Spark 2.4.4 and Hadoop 2.7.5'
Testing ADAM version 0.30.0-SNAPSHOT on Spark 2.4.4 and Hadoop 2.7.5

# first, build the sources, run the unit tests, and generate a coverage report
mvn clean \
    -Dhadoop.version=${HADOOP_VERSION}
+ mvn clean -Dhadoop.version=2.7.5
Java HotSpot(TM) 64-Bit Server VM warning: ignoring option MaxPermSize=1g; support was removed in 8.0
[INFO] Scanning for projects...
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Build Order:
[INFO] 
[INFO] ADAM_2.11
[INFO] ADAM_2.11: Avro-to-Dataset codegen utils
[INFO] ADAM_2.11: Core
[INFO] ADAM_2.11: APIs for Java, Python
[INFO] ADAM_2.11: CLI
[INFO] ADAM_2.11: Assembly
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ADAM_2.11 0.30.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ adam-parent-spark2_2.11 ---
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ADAM_2.11: Avro-to-Dataset codegen utils 0.30.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ adam-codegen-spark2_2.11 ---
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ADAM_2.11: Core 0.30.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ adam-core-spark2_2.11 ---
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ADAM_2.11: APIs for Java, Python 0.30.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ adam-apis-spark2_2.11 ---
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ADAM_2.11: CLI 0.30.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ adam-cli-spark2_2.11 ---
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ADAM_2.11: Assembly 0.30.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ adam-assembly-spark2_2.11 ---
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO] 
[INFO] ADAM_2.11 .......................................... SUCCESS [  0.198 s]
[INFO] ADAM_2.11: Avro-to-Dataset codegen utils ........... SUCCESS [  0.008 s]
[INFO] ADAM_2.11: Core .................................... SUCCESS [  0.011 s]
[INFO] ADAM_2.11: APIs for Java, Python ................... SUCCESS [  0.002 s]
[INFO] ADAM_2.11: CLI ..................................... SUCCESS [  0.024 s]
[INFO] ADAM_2.11: Assembly ................................ SUCCESS [  0.001 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESS
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 0.513 s
[INFO] Finished at: 2020-01-24T09:52:50-08:00
[INFO] Final Memory: 22M/1472M
[INFO] ------------------------------------------------------------------------
    
# if this is a pull request, we need to set the coveralls pr id
if [[ ! -z $ghprbPullId ]];
then
    COVERALLS_PRB_OPTION="-DpullRequest=${ghprbPullId}"
fi
+ [[ ! -z 2245 ]]
+ COVERALLS_PRB_OPTION=-DpullRequest=2245

# coveralls token should not be visible
set +x +v
+ set +x +v
Java HotSpot(TM) 64-Bit Server VM warning: ignoring option MaxPermSize=1g; support was removed in 8.0
[INFO] Scanning for projects...
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Build Order:
[INFO] 
[INFO] ADAM_2.11
[INFO] ADAM_2.11: Avro-to-Dataset codegen utils
[INFO] ADAM_2.11: Core
[INFO] ADAM_2.11: APIs for Java, Python
[INFO] ADAM_2.11: CLI
[INFO] ADAM_2.11: Assembly
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ADAM_2.11 0.30.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-parent-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-parent-spark2_2.11 ---
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-parent-spark2_2.11 ---
[INFO] Modified 0 of 241 .scala files
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-parent-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-parent-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] >>> scoverage-maven-plugin:1.1.1:report (default-cli) > [scoverage]test @ adam-parent-spark2_2.11 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-parent-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-parent-spark2_2.11 ---
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-parent-spark2_2.11 ---
[INFO] Modified 0 of 241 .scala files
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:pre-compile (default-cli) @ adam-parent-spark2_2.11 ---
[INFO] Skipping SCoverage execution for project with packaging type 'pom'
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-parent-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:post-compile (default-cli) @ adam-parent-spark2_2.11 ---
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-parent-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] <<< scoverage-maven-plugin:1.1.1:report (default-cli) < [scoverage]test @ adam-parent-spark2_2.11 <<<
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:report (default-cli) @ adam-parent-spark2_2.11 ---
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ADAM_2.11: Avro-to-Dataset codegen utils 0.30.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-codegen-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-codegen-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-codegen-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-codegen-spark2_2.11 ---
[INFO] Modified 0 of 4 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-codegen-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-codegen-spark2_2.11 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/src/main/scala:-1: info: compiling
[INFO] Compiling 4 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/target/2.11.12/classes at 1579888383307
[INFO] prepare-compile in 0 s
[INFO] compile in 3 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-codegen-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-codegen-spark2_2.11 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-codegen-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/src/test/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-codegen-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-codegen-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-codegen-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-codegen-spark2_2.11 ---
Discovery starting.
Discovery completed in 56 milliseconds.
Run starting. Expected test count is: 0
DiscoverySuite:
Run completed in 85 milliseconds.
Total number of tests run: 0
Suites: completed 1, aborted 0
Tests: succeeded 0, failed 0, canceled 0, ignored 0, pending 0
No tests were executed.
[INFO] 
[INFO] >>> scoverage-maven-plugin:1.1.1:report (default-cli) > [scoverage]test @ adam-codegen-spark2_2.11 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-codegen-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-codegen-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-codegen-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-codegen-spark2_2.11 ---
[INFO] Modified 0 of 4 .scala files
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:pre-compile (default-cli) @ adam-codegen-spark2_2.11 ---
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-codegen-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-codegen-spark2_2.11 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/src/main/scala:-1: info: compiling
[INFO] Compiling 4 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/target/2.11.12/scoverage-classes at 1579888388320
[INFO] [info] Cleaning datadir [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/target/scoverage-data]
[INFO] [info] Beginning coverage instrumentation
[INFO] [info] Instrumentation completed [0 statements]
[INFO] [info] Wrote instrumentation file [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/target/scoverage-data/scoverage.coverage.xml]
[INFO] [info] Will write measurement data to [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/target/scoverage-data]
[INFO] prepare-compile in 0 s
[INFO] compile in 4 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-codegen-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:post-compile (default-cli) @ adam-codegen-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-codegen-spark2_2.11 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-codegen-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/src/test/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-codegen-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-codegen-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-codegen-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-codegen-spark2_2.11 ---
Discovery starting.
Discovery completed in 90 milliseconds.
Run starting. Expected test count is: 0
DiscoverySuite:
Run completed in 125 milliseconds.
Total number of tests run: 0
Suites: completed 1, aborted 0
Tests: succeeded 0, failed 0, canceled 0, ignored 0, pending 0
No tests were executed.
[INFO] 
[INFO] <<< scoverage-maven-plugin:1.1.1:report (default-cli) < [scoverage]test @ adam-codegen-spark2_2.11 <<<
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:report (default-cli) @ adam-codegen-spark2_2.11 ---
[INFO] [scoverage] Generating cobertura XML report...
[INFO] [scoverage] Generating scoverage XML report...
[INFO] [scoverage] Generating scoverage HTML report...
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ADAM_2.11: Core 0.30.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
Downloading: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/bdg-formats/bdg-formats/0.15.0-SNAPSHOT/maven-metadata.xml
793/793 B   
            
Downloaded: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/bdg-formats/bdg-formats/0.15.0-SNAPSHOT/maven-metadata.xml (793 B at 1.2 KB/sec)
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-core-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-core-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-core-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala added.
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/generated-sources/src/main/scala added.
[INFO] 
[INFO] --- exec-maven-plugin:1.5.0:java (generate-scala-products) @ adam-core-spark2_2.11 ---
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] 
[INFO] --- exec-maven-plugin:1.5.0:java (generate-scala-projection-fields) @ adam-core-spark2_2.11 ---
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-core-spark2_2.11 ---
[INFO] Modified 2 of 203 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-core-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-core-spark2_2.11 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/java:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/generated-sources/src/main/scala:-1: info: compiling
[INFO] Compiling 138 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/2.11.12/classes at 1579888402135
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicDataset.scala:3099: warning: no valid targets for annotation on value uTag - it is discarded unused. You may specify targets with meta-annotations, e.g. @(transient @getter)
[WARNING]   @transient val uTag: TypeTag[U]
[WARNING]    ^
[WARNING] warning: there were 89 deprecation warnings; re-run with -deprecation for details
[WARNING] warning: there were 5 feature warnings; re-run with -feature for details
[WARNING] three warnings found
[INFO] prepare-compile in 0 s
[INFO] compile in 32 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-core-spark2_2.11 ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 5 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/2.11.12/classes
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-core-spark2_2.11 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-core-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 152 resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-core-spark2_2.11 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala:-1: info: compiling
[INFO] Compiling 70 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/2.11.12/test-classes at 1579888437446
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/algorithms/consensus/NormalizationUtilsSuite.scala:59: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]       .build()
[WARNING]             ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/algorithms/consensus/NormalizationUtilsSuite.scala:61: warning: method richRecordToRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     val new_cigar = NormalizationUtils.leftAlignIndel(read)
[WARNING]                                                       ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/algorithms/consensus/NormalizationUtilsSuite.scala:66: warning: method richRecordToRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     assert(RichAlignment(read).samtoolsCigar.getReadLength === new_cigar.getReadLength)
[WARNING]                          ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/SAMRecordConverterSuite.scala:54: warning: method getNotPrimaryAlignmentFlag in class SAMRecord is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(!testAlignment.getPrimaryAlignment === testSAMRecord.getNotPrimaryAlignmentFlag)
[WARNING]                                                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/SAMRecordConverterSuite.scala:89: warning: method getNotPrimaryAlignmentFlag in class SAMRecord is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(!testAlignment.getPrimaryAlignment === testSAMRecord.getNotPrimaryAlignmentFlag)
[WARNING]                                                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:53: warning: method extractDictionary in object SAMSequenceDictionaryExtractor is deprecated: see corresponding Javadoc for more information.
[WARNING]     SequenceDictionary(SAMSequenceDictionaryExtractor.extractDictionary(new File(path)))
[WARNING]                                                       ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/CoverageSuite.scala:37: warning: variable start in class Feature is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(coverageAfterConversion.start == featureToConvert.start)
[WARNING]                                                              ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/CoverageSuite.scala:38: warning: variable end in class Feature is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(coverageAfterConversion.end == featureToConvert.end)
[WARNING]                                                            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/CoverageSuite.scala:40: warning: variable score in class Feature is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(coverageAfterConversion.count == featureToConvert.score)
[WARNING]                                                              ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/CoverageSuite.scala:57: warning: variable start in class Feature is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(coverageAfterConversion.start == featureToConvert.start)
[WARNING]                                                              ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/CoverageSuite.scala:58: warning: variable end in class Feature is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(coverageAfterConversion.end == featureToConvert.end)
[WARNING]                                                            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/CoverageSuite.scala:60: warning: variable score in class Feature is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(coverageAfterConversion.count == featureToConvert.score)
[WARNING]                                                              ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/CoverageSuite.scala:61: warning: variable sampleId in class Feature is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(coverageAfterConversion.optSampleId == Some(featureToConvert.sampleId))
[WARNING]                                                                         ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/MdTagSuite.scala:194: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     assert(read.mdTag.get.end === read.getEnd)
[WARNING]            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/MdTagSuite.scala:475: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     val tag = read.mdTag.get
[WARNING]               ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/MdTagSuite.scala:482: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     assert(tag.getReference(read) === "AAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGGGGAAAAAAAAAAGGGGGGGGGGAAAAAAAAAAA")
[WARNING]                             ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/MdTagSuite.scala:495: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     val tag = read.mdTag.get
[WARNING]               ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/MdTagSuite.scala:496: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     assert(tag.getReference(read, withGaps = true) === "AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGGGGAAAAAAAAAAA")
[WARNING]                             ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/MdTagSuite.scala:510: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     val newTag = MdTag.moveAlignment(read, newCigar)
[WARNING]                                      ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/MdTagSuite.scala:526: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     val newTag = MdTag.moveAlignment(read, newCigar, "AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA", 100L)
[WARNING]                                      ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/MdTagSuite.scala:544: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     val newTag = MdTag.moveAlignment(read, newCigar, "GGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA", 100L)
[WARNING]                                      ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/MdTagSuite.scala:562: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     val newTag = MdTag.moveAlignment(read, newCigar, "AAAAAAAAAAGGGGGGGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA", 100L)
[WARNING]                                      ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/MdTagSuite.scala:580: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     val newTag = MdTag.moveAlignment(read, newCigar, "AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA", 100L)
[WARNING]                                      ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/SequenceDictionarySuite.scala:48: warning: method extractDictionary in object SAMSequenceDictionaryExtractor is deprecated: see corresponding Javadoc for more information.
[WARNING]     val ssd = SAMSequenceDictionaryExtractor.extractDictionary(new File(path))
[WARNING]                                              ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/SequenceDictionarySuite.scala:62: warning: method extractDictionary in object SAMSequenceDictionaryExtractor is deprecated: see corresponding Javadoc for more information.
[WARNING]     val ssd = SAMSequenceDictionaryExtractor.extractDictionary(new File(path))
[WARNING]                                              ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/SequenceDictionarySuite.scala:75: warning: method extractDictionary in object SAMSequenceDictionaryExtractor is deprecated: see corresponding Javadoc for more information.
[WARNING]     val ssd = SAMSequenceDictionaryExtractor.extractDictionary(new File(path))
[WARNING]                                              ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/ADAMContextSuite.scala:832: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val df = SQLContext.getOrCreate(sc).read.parquet(outputDir)
[WARNING]                         ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/ADAMContextSuite.scala:845: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val df = SQLContext.getOrCreate(sc).read.parquet(outputDir)
[WARNING]                         ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/ADAMContextSuite.scala:857: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val df = SQLContext.getOrCreate(sc).read.parquet(outputDir)
[WARNING]                         ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/ADAMContextSuite.scala:870: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val df = SQLContext.getOrCreate(sc).read.parquet(outputDir)
[WARNING]                         ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/ADAMContextSuite.scala:883: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val df = SQLContext.getOrCreate(sc).read.parquet(outputDir)
[WARNING]                         ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/ADAMContextSuite.scala:896: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val df = SQLContext.getOrCreate(sc).read.parquet(outputDir)
[WARNING]                         ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/ADAMContextSuite.scala:907: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val df = SQLContext.getOrCreate(sc).read.parquet(outputDir)
[WARNING]                         ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/ADAMContextSuite.scala:918: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val df = SQLContext.getOrCreate(sc).read.parquet(outputDir)
[WARNING]                         ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/ADAMContextSuite.scala:929: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val df = SQLContext.getOrCreate(sc).read.parquet(outputDir)
[WARNING]                         ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/ADAMContextSuite.scala:943: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val df = SQLContext.getOrCreate(sc).read.parquet(outputDir)
[WARNING]                         ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/ADAMContextSuite.scala:956: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val df = SQLContext.getOrCreate(sc).read.parquet(outputDir)
[WARNING]                         ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/ADAMContextSuite.scala:968: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val df = SQLContext.getOrCreate(sc).read.parquet(outputDir)
[WARNING]                         ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/ADAMContextSuite.scala:980: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val df = SQLContext.getOrCreate(sc).read.parquet(outputDir)
[WARNING]                         ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/ADAMContextSuite.scala:993: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val df = SQLContext.getOrCreate(sc).read.parquet(outputDir)
[WARNING]                         ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/ADAMContextSuite.scala:1005: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val df = SQLContext.getOrCreate(sc).read.parquet(outputDir)
[WARNING]                         ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/ADAMContextSuite.scala:1018: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val df = SQLContext.getOrCreate(sc).read.parquet(outputDir)
[WARNING]                         ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/ADAMContextSuite.scala:1031: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val df = SQLContext.getOrCreate(sc).read.parquet(outputDir)
[WARNING]                         ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/ADAMContextSuite.scala:1044: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val df = SQLContext.getOrCreate(sc).read.parquet(outputDir)
[WARNING]                         ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/feature/CoverageDatasetSuite.scala:307: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/feature/CoverageDatasetSuite.scala:338: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/feature/CoverageDatasetSuite.scala:369: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/feature/CoverageDatasetSuite.scala:400: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/feature/CoverageDatasetSuite.scala:431: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/feature/CoverageDatasetSuite.scala:462: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/feature/FeatureDatasetSuite.scala:1022: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/feature/FeatureDatasetSuite.scala:1053: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/feature/FeatureDatasetSuite.scala:1081: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/feature/FeatureDatasetSuite.scala:1112: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/feature/FeatureDatasetSuite.scala:1143: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/feature/FeatureDatasetSuite.scala:1174: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/fragment/FragmentDatasetSuite.scala:400: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/fragment/FragmentDatasetSuite.scala:431: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/fragment/FragmentDatasetSuite.scala:459: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/fragment/FragmentDatasetSuite.scala:490: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/fragment/FragmentDatasetSuite.scala:521: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/fragment/FragmentDatasetSuite.scala:552: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/read/AlignmentDatasetSuite.scala:1438: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/read/AlignmentDatasetSuite.scala:1460: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/read/AlignmentDatasetSuite.scala:1491: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/read/AlignmentDatasetSuite.scala:1519: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/read/AlignmentDatasetSuite.scala:1550: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/read/AlignmentDatasetSuite.scala:1581: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/read/AlignmentDatasetSuite.scala:1613: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTargetSuite.scala:83: warning: method richRecordToRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     assert(TargetOrdering.contains(targets.head, read))
[WARNING]                                                  ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTargetSuite.scala:191: warning: method richRecordToRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]         if (read.getStart < 105) {
[WARNING]             ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTargetSuite.scala:194: warning: method richRecordToRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]           assert(targets.head.readRange.start === read.getStart)
[WARNING]                                                   ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTargetSuite.scala:195: warning: method richRecordToRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]           assert(targets.head.readRange.end === read.getEnd)
[WARNING]                                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTargetSuite.scala:196: warning: method richRecordToRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]           assert(check_indel(targets.head, read))
[WARNING]                                            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:406: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:437: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:465: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:496: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:527: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:558: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:697: warning: variable end in class Genotype is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(first.end === 16157602L)
[WARNING]                  ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:698: warning: variable end in class Variant is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(first.variant.end === 16157602L)
[WARNING]                          ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:698: warning: variable variant in class Genotype is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(first.variant.end === 16157602L)
[WARNING]                  ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:699: warning: variable annotation in class Variant is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(first.variant.annotation === null)
[WARNING]                          ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:699: warning: variable variant in class Genotype is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(first.variant.annotation === null)
[WARNING]                  ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:710: warning: variable end in class Genotype is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(firstVcfGenotype.end === 16157602L)
[WARNING]                             ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:712: warning: variable end in class Variant is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(firstVcfGenotype.variant.end === 16157602L)
[WARNING]                                     ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:712: warning: variable variant in class Genotype is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(firstVcfGenotype.variant.end === 16157602L)
[WARNING]                             ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:714: warning: variable annotation in class Variant is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(firstVcfGenotype.variant.annotation === null)
[WARNING]                                     ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:714: warning: variable variant in class Genotype is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(firstVcfGenotype.variant.annotation === null)
[WARNING]                             ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:745: warning: variable end in class Genotype is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(first.end === 16157602L)
[WARNING]                  ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:746: warning: variable end in class Variant is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(first.variant.end === 16157602L)
[WARNING]                          ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:746: warning: variable variant in class Genotype is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(first.variant.end === 16157602L)
[WARNING]                  ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:747: warning: variable attributes in class VariantAnnotation is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(first.variant.annotation.attributes.get("END") === "16157602")
[WARNING]                                     ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:747: warning: variable annotation in class Variant is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(first.variant.annotation.attributes.get("END") === "16157602")
[WARNING]                          ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:747: warning: variable variant in class Genotype is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(first.variant.annotation.attributes.get("END") === "16157602")
[WARNING]                  ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:758: warning: variable end in class Genotype is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(firstVcfGenotype.end === 16157602L)
[WARNING]                             ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:759: warning: variable end in class Variant is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(firstVcfGenotype.variant.end === 16157602L)
[WARNING]                                     ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:759: warning: variable variant in class Genotype is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(firstVcfGenotype.variant.end === 16157602L)
[WARNING]                             ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:760: warning: variable attributes in class VariantAnnotation is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(firstVcfGenotype.variant.annotation.attributes.get("END") === "16157602")
[WARNING]                                                ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:760: warning: variable annotation in class Variant is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(firstVcfGenotype.variant.annotation.attributes.get("END") === "16157602")
[WARNING]                                     ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:760: warning: variable variant in class Genotype is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(firstVcfGenotype.variant.annotation.attributes.get("END") === "16157602")
[WARNING]                             ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/VariantContextDatasetSuite.scala:181: warning: variable start in class Genotype is deprecated: see corresponding Javadoc for more information.
[WARNING]     val filtered = vcs.toGenotypes().rdd.filter(_.start == 66631043)
[WARNING]                                                   ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/VariantDatasetSuite.scala:422: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/VariantDatasetSuite.scala:453: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/VariantDatasetSuite.scala:481: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/VariantDatasetSuite.scala:512: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/VariantDatasetSuite.scala:543: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/VariantDatasetSuite.scala:574: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichAlignmentSuite.scala:31: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     assert(recordWithoutClipping.unclippedStart == 42L)
[WARNING]            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichAlignmentSuite.scala:32: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     assert(recordWithClipping.unclippedStart == 40L)
[WARNING]            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichAlignmentSuite.scala:33: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     assert(recordWithHardClipping.unclippedStart == 37L)
[WARNING]            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichAlignmentSuite.scala:41: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     assert(recordWithoutClipping.unclippedEnd == 20L)
[WARNING]            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichAlignmentSuite.scala:42: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     assert(recordWithClipping.unclippedEnd == 20L)
[WARNING]            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichAlignmentSuite.scala:43: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     assert(recordWithHardClipping.unclippedEnd == 20L)
[WARNING]            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichAlignmentSuite.scala:49: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     assert(rec.tags.size === 2)
[WARNING]            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichAlignmentSuite.scala:50: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     assert(rec.tags(0) === Attribute("XX", TagType.Integer, 3))
[WARNING]            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichAlignmentSuite.scala:51: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     assert(rec.tags(1) === Attribute("YY", TagType.String, "foo"))
[WARNING]            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichAlignmentSuite.scala:57: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     val overlaps = unmappedRead.overlapsReferencePosition(ReferencePosition("chr1", 10))
[WARNING]                    ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichCigarSuite.scala:34: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     val newCigar = RichCigar(new Cigar(read.samtoolsCigar.getCigarElements)).moveLeft(1)
[WARNING]                                        ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichCigarSuite.scala:37: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     assert(newCigar2.cigar.getReadLength == read.samtoolsCigar.getReadLength)
[WARNING]                                             ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichCigarSuite.scala:49: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     val newCigar = RichCigar(new Cigar(read.samtoolsCigar.getCigarElements)).moveLeft(1)
[WARNING]                                        ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichCigarSuite.scala:52: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     assert(newCigar2.cigar.getReadLength == read.samtoolsCigar.getReadLength)
[WARNING]                                             ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichCigarSuite.scala:64: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     val newCigar = RichCigar(new Cigar(read.samtoolsCigar.getCigarElements)).moveLeft(1)
[WARNING]                                        ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichCigarSuite.scala:66: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     assert(newCigar.cigar.getReadLength == read.samtoolsCigar.getReadLength)
[WARNING]                                            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichCigarSuite.scala:78: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     val newCigar = RichCigar(new Cigar(read.samtoolsCigar.getCigarElements)).moveLeft(1)
[WARNING]                                        ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichCigarSuite.scala:80: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     assert(newCigar.cigar.getReadLength == read.samtoolsCigar.getReadLength)
[WARNING]                                            ^
[WARNING] 127 warnings found
[INFO] prepare-compile in 0 s
[INFO] compile in 38 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-core-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-core-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-core-spark2_2.11 ---
Discovery starting.
Discovery completed in 2 seconds, 731 milliseconds.
Run starting. Expected test count is: 1175
RepairPartitionsSuite:
- don't pull from the first partition
- properly handle pulling from an empty iterator
- gets a single read from the partition if there are no other reads in the pair
- gets all the reads from a pair from the start of a partition
- properly handle dropping from an empty iterator
- don't drop from the first partition
- drop a single read from the partition if there are no other reads in the pair
- drops all the reads from a pair from the start of a partition
- only append to the first partition
- drop a single read from the partition and append read when in the middle
- drop reads from the start and don't append when in the last partition
- can't have more records than number of partitions
- unroll array for broadcast
2020-01-24 09:54:40 WARN  Utils:66 - Your hostname, amp-jenkins-staging-worker-02 resolves to a loopback address: 127.0.1.1; using 192.168.10.32 instead (on interface eno1)
2020-01-24 09:54:40 WARN  Utils:66 - Set SPARK_LOCAL_IP if you need to bind to another address
2020-01-24 09:54:40 WARN  NativeCodeLoader:62 - Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
- move pairs around an rdd
FlagStatSuite:
- Standard FlagStat test
ModPartitionerSuite:
- report number of partitions correctly
- partition a number that is lower than the number of partitions and positive
- partition a number that is greater than the number of partitions and positive
- partition a number that is lower than the number of partitions and negative
- partition a number that is greater than the number of partitions and negative
- fire an exception if input is not an integer
TwoBitFileSuite:
- correctly read sequence from .2bit file
- correctly return masked sequences from .2bit file
- correctly return Ns from .2bit file
- correctly calculates sequence dictionary
NonoverlappingRegionsSuite:
- alternating returns an alternating seq of items
- Single region returns itself
- Two adjacent regions will be merged
- Nonoverlapping regions will all be returned
- Many overlapping regions will all be merged
- ADAMRecords return proper references
ReferencePositionSuite:
- create reference position from mapped read
- create reference position from variant
- create reference position from genotype
- create reference position from variant starting at vcf 0
- create reference position from genotype starting at vcf 0
ConsensusGeneratorFromReadsSuite:
- checking search for consensus list for artificial reads
FragmentConverterSuite:
- build a fragment collector and convert to a read
- if a fragment isn't associated with a contig, don't get a fragment collector
- convert an rdd of discontinuous fragments, all from the same contig
- convert an rdd of contiguous fragments, all from the same contig
- convert an rdd of varied fragments from multiple contigs
FileMergerSuite:
- cannot write both empty gzip block and cram eof
- buffer size must be non-negative
RichAlignmentSuite:
- Unclipped Start
- Unclipped End
- tags contains optional fields
- read overlap unmapped read
- read overlap reference position
- read overlap same position different contig
SingleReadBucketSuite:
- convert unmapped pair to fragment
- convert proper pair to fragment
- convert read pair to fragment with first of pair chimeric read
RecalibrationTableSuite:
- look up quality scores in table
FlankSlicesSuite:
- don't put flanks on non-adjacent slices
- put flanks on adjacent slices
InterleavedFastqInputFormatSuite:
- interleaved FASTQ hadoop reader: interleaved_fastq_sample1.ifq->interleaved_fastq_sample1.ifq.output
- interleaved FASTQ hadoop reader: interleaved_fastq_sample2.ifq->interleaved_fastq_sample2.ifq.output
- interleaved FASTQ hadoop reader: interleaved_fastq_sample3.ifq->interleaved_fastq_sample3.ifq.output
- interleaved FASTQ hadoop reader: interleaved_fastq_sample4.ifq->interleaved_fastq_sample4.ifq.output
- interleaved FASTQ hadoop reader: interleaved_fastq_sample5.ifq->interleaved_fastq_sample5.ifq.output
TreeRegionJoinSuite:
- run a join between data on a single contig
ReferenceRegionSuite:
- cannot create an empty predicate
- parse empty string throws IllegalArgumentException
- parse contigName only string into reference regions
- parse to end strings into reference regions
- parse string into reference regions
- contains(: ReferenceRegion)
- contains(: ReferencePosition)
- merge
- overlaps and covers
- overlapsBy and coversBy
- distance(: ReferenceRegion)
- distance(: ReferencePosition)
- unstrandedDistance
- subtract fails on non-overlapping and non-covering regions
- subtract
- create region from unmapped read fails
- create region from read with null alignment positions fails
- create stranded region from unmapped read fails
- create stranded region from read with null alignment positions fails
- create stranded region from read with null alignment strand fails
- create stranded region from read on forward strand
- create stranded region from read on reverse strand
- create region from mapped read contains read start and end
- validate that adjacent regions can be merged
- validate that non-adjacent regions cannot be merged
- validate that nearby regions can be merged
- validate that non-nearby regions cannot be merged
- compute convex hull of two sets
- region name is sanitized when creating region from read
- intersection fails on non-overlapping regions
- intersection fails when minOverlap is not met
- compute intersection
- overlap tests for oriented reference region
- check the width of a reference region
- make a reference region for a variant or genotype
- make a reference region for a variant or genotype starting at VCF 0
- uniformly pad a reference region
- uniformly pad a reference region into negative coordinate space, ensure non negative start
- unevenly pad a reference region
- unevenly pad a reference region into negative coordinate space, ensure non negative start
- can build an open ended reference region
- can build an open ended reference region with strand
- can build a reference region with an open start position
- can build a reference region with an open start position with strand
- can build a reference region that covers the entirety of a contig
- can build a reference region that covers the entirety of a contig with strand
- convert a genotype and then get the reference region
- create region from feature with null alignment positions fails
- create stranded region from feature with null alignment positions fails
- create stranded region from feature with null alignment strand fails
- create stranded region from feature on forward strand
- create stranded region from feature on reverse strand
CoverageDatasetSuite:
- correctly saves coverage
- can read a bed file to coverage
- correctly filters coverage with predicate
- keeps sample metadata
- can read a bed file with multiple samples to coverage
- correctly flatmaps coverage without aggregated bins
- correctly flatmaps coverage with aggregated bins
- collapses coverage records in one partition
- approximately collapses coverage records in multiple partitions
2020-01-24 09:55:04 WARN  DatasetBoundSliceDataset:190 - Saving directly as Parquet from SQL. Options other than compression codec are ignored.
- transform coverage to slice genomic dataset
- transform coverage to feature genomic dataset
2020-01-24 09:55:06 WARN  Utils:66 - Truncated the string representation of a plan since it was too large. This behavior can be adjusted by setting 'spark.debug.maxToStringFields' in SparkEnv.conf.
- transform coverage to fragment genomic dataset
- transform coverage to read genomic dataset
- transform coverage to genotype genomic dataset
- transform coverage to variant genomic dataset
- transform coverage to variant context genomic dataset
- copy coverage rdd
- copy coverage dataset
- copy coverage rdd without sequence dictionary
- copy coverage dataset without sequence dictionary
- transform dataset via java API
RecalibratorSuite:
- don't replace quality if quality was null
- if no covariates, return alignment
- skip recalibration if base is below quality threshold
- recalibrate changed bases above quality threshold
SliceDatasetSuite:
- create a new slice genomic dataset
- create a new slice genomic dataset with sequence dictionary
- merge slices into a sequence genomic dataset
- save as parquet
- round trip as parquet
- save as fasta
- save as single file fasta
- convert slices to reads
- convert slices to sequences
GenotypeDatasetSuite:
- union two genotype genomic datasets together
- round trip to parquet
- round trip to partitioned parquet
- use broadcast join to pull down genotypes mapped to targets
- use right outer broadcast join to pull down genotypes mapped to targets
- use shuffle join to pull down genotypes mapped to targets
- use right outer shuffle join to pull down genotypes mapped to targets
- use left outer shuffle join to pull down genotypes mapped to targets
- use full outer shuffle join to pull down genotypes mapped to targets
- use shuffle join with group by to pull down genotypes mapped to targets
- use right outer shuffle join with group by to pull down genotypes mapped to targets
- convert back to variant contexts
- load parquet to sql, save, re-read from avro
2020-01-24 09:55:39 WARN  DatasetBoundSliceDataset:190 - Saving directly as Parquet from SQL. Options other than compression codec are ignored.
- transform genotypes to slice genomic dataset
- transform genotypes to coverage genomic dataset
- transform genotypes to feature genomic dataset
- transform genotypes to fragment genomic dataset
- transform genotypes to read genomic dataset
- transform genotypes to variant genomic dataset
- transform genotypes to variant context genomic dataset
- loading genotypes then converting to variants yields same output as loading variants
- filter RDD bound genotypes to genotype filters passed
- filter dataset bound genotypes to genotype filters passed
- filter RDD bound genotypes by genotype quality
- filter dataset bound genotypes by genotype quality
- filter RDD bound genotypes by read depth
- filter dataset bound genotypes by read depth
- filter RDD bound genotypes by alternate read depth
- filter dataset bound genotypes by alternate read depth
- filter RDD bound genotypes by reference read depth
- filter dataset bound genotypes by reference read depth
- filter RDD bound genotypes by sample
- filter dataset bound genotypes by sample
- filter RDD bound genotypes by samples
- filter dataset bound genotypes by samples
- filter RDD bound no call genotypes
- filter dataset no call genotypes
- round trip gVCF END attribute without nested variant annotations rdd bound
- round trip gVCF END attribute without nested variant annotations dataset bound
- round trip gVCF END attribute with nested variant annotations rdd bound
- round trip gVCF END attribute with nested variant annotations dataset bound
- transform dataset via java API
FragmentDatasetSuite:
- don't lose any reads when piping interleaved fastq to sam
- don't lose any reads when piping tab5 to sam
- don't lose any reads when piping tab6 to sam
- use broadcast join to pull down fragments mapped to targets
- use right outer broadcast join to pull down fragments mapped to targets
- use shuffle join to pull down fragments mapped to targets
- use right outer shuffle join to pull down fragments mapped to targets
- use left outer shuffle join to pull down fragments mapped to targets
- use full outer shuffle join to pull down fragments mapped to targets
- use shuffle join with group by to pull down fragments mapped to targets
- use right outer shuffle join with group by to pull down fragments mapped to targets
- bin quality scores in fragments
- union two genomic datasets of fragments together
- load parquet to sql, save, re-read from avro
- transform fragments to slice genomic dataset
- transform fragments to coverage genomic dataset
- transform fragments to feature genomic dataset
- transform fragments to read genomic dataset
- transform fragments to genotype genomic dataset
- transform fragments to variant genomic dataset
- transform fragments to variant context genomic dataset
- paired read names with index sequences in read names can group into fragments
- interleaved paired read names with index sequences in read names can group into fragments
- interleaved paired read names with index sequences in read names as fragments
- transform dataset via java API
- dataset and rdd conversion to alignments are equivalent
SingleFastqInputFormatSuite:
- FASTQ hadoop reader: fastq_sample1.fq->single_fastq_sample1.fq.output
- FASTQ hadoop reader: fastq_sample2.fq->single_fastq_sample2.fq.output
- FASTQ hadoop reader: fastq_sample3.fq->single_fastq_sample3.fq.output
- FASTQ hadoop reader: fastq_sample4.fq->single_fastq_sample4.fq.output
VariantContextDatasetSuite:
- load a gvcf with a missing info field set to .
- union two variant context genomic datasets together
- can write, then read in .vcf file
- can write as a single file via simple saveAsVcf method, then read in .vcf file
- can write as a single file via full saveAsVcf method, then read in .vcf file
- transform a vcf file with bad header
- read a vcf file with multi-allelic variants to split
- support VCFs with +Inf/-Inf float values
- support VCFs with `nan` instead of `NaN` float values
- don't lose any variants when piping as VCF
- pipe works with empty partitions
- don't lose any non-default VCF header lines or attributes when piping as VCF
- save a file sorted by contig index
- save a lexicographically sorted file
- save a multiallelic gvcf !!! IGNORED !!!
- test metadata
- save sharded bgzip vcf
- save bgzip vcf as single file
- can't save file with non-vcf extension
- transform variant contexts to slice genomic dataset
- transform variant contexts to coverage genomic dataset
- transform variant contexts to feature genomic dataset
- transform variant contexts to fragment genomic dataset
- transform variant contexts to read genomic dataset
- transform variant contexts to genotype genomic dataset
- transform variant contexts to variant genomic dataset
- save and reload from partitioned parquet
- transform dataset via java API
ConsensusSuite:
- test the insertion of a consensus insertion into a reference
- test the insertion of a consensus deletion into a reference
- inserting empty consensus returns the reference
SequenceDatasetSuite:
- create a new sequence genomic dataset
- create a new sequence genomic dataset with sequence dictionary
- save as parquet
- round trip as parquet
- save as fasta
- save as single file fasta
- convert sequences to reads
- convert sequences to slices
- slice sequences to a maximum length
- slice sequences shorter than maximum length
- filter sequences by overlapping region
- filter sequences failing to overlap region
- filter sequences by overlapping regions
- filter sequences failing to overlap regions
- slice sequences overlapping a smaller region
- slice sequences overlapping a larger region
- slice sequences failing to overlap a region
- slice sequences overlapping smaller regions
- slice sequences overlapping larger regions
- slice sequences failing to overlap regions
AttributeUtilsSuite:
- parseTags returns a reasonable set of tagStrings
- parseTags works with NumericSequence tagType
- empty string is parsed as zero tagStrings
- incorrectly formatted tag throws an exception
- string tag with a ':' in it is correctly parsed
- oq string tag with many ':' in it is correctly parsed
- oq string tag with a ',' in it is correctly parsed
- if a tag is an array but doesn't define it's format, throw
MarkDuplicatesSuite:
- single read
- reads at different positions
- reads at the same position
- reads at the same position with clipping
- reads on reverse strand
- unmapped reads
- read pairs
- read pairs with fragments
- quality scores
- read pairs that cross chromosomes
- single fragment
- fragments at different positions
- fragments at the same position
- fragments at the same position with clipping
- fragments on reverse strand
- unmapped fragments
- read pairs as fragments
- read pairs with fragments as fragments
- chimeric fragments
- inverse pairs
- supplemental reads
TranscriptEffectConverterSuite:
- parse empty transcript effect
- parse empty transcript effect strict validation stringency
- parse invalid transcript effect
- parse invalid transcript effect strict validation stringency
- parse transcript effect
- parse empty list VCF ANN attribute
- parse empty list VCF ANN attribute strict validation stringency
- parse empty string VCF ANN attribute
- parse empty string VCF ANN attribute strict validation stringency
- parse invalid VCF ANN attribute
- parse invalid VCF ANN attribute strict validation stringency
- parse VCF ANN attribute with one transcript effect
- parse VCF ANN attribute with multiple transcript effects
- convert to transcript effect from null VCF ANN attribute in variant context
- convert to transcript effect from empty list VCF ANN attribute in variant context
- convert to transcript effect from empty list VCF ANN attribute in variant context strict validation stringency
- convert to transcript effect from empty string VCF ANN attribute in variant context
- convert to transcript effect from empty string VCF ANN attribute in variant context strict validation stringency
- convert to transcript effect from invalid VCF ANN attribute in variant context
- convert to transcript effect from invalid VCF ANN attribute in variant context strict validation stringency
2020-01-24 09:57:24 WARN  TranscriptEffectConverter$:190 - Could not convert VCF INFO reserved key ANN value to TranscriptEffect, caught java.lang.NumberFormatException: For input string: "not a number".
- convert to transcript effect from VCF ANN attribute with invalid number in variant context lenient validation stringency
2020-01-24 09:57:24 WARN  TranscriptEffectConverter$:190 - Could not convert VCF INFO reserved key ANN value to TranscriptEffect, caught java.lang.NumberFormatException: For input string: "not a number".
- convert to transcript effect from VCF ANN attribute with invalid fraction in variant context lenient validation stringency
- convert to transcript effect from VCF ANN attribute with invalid number in variant context strict validation stringency
- convert to transcript effect from VCF ANN attribute with invalid fraction in variant context strict validation stringency
- convert to transcript effect from VCF ANN attribute in variant context different alt allele
- convert to transcript effect from VCF ANN attribute in variant context same alt allele
- convert to transcript effect from VCF ANN attribute in variant context multiple effects same alt allele
- convert transcript effect to VCF ANN attribute value
- convert transcript effect with null fields to VCF ANN attribute value
2020-01-24 09:57:24 WARN  TranscriptEffectConverter$:190 - Incorrect fractional value ?/2, missing numerator
- convert transcript effect with incorrect fractional value to VCF ANN attribute value
IndelRealignmentTargetSuite:
- checking simple realignment target
- creating simple target from read with deletion
- creating simple target from read with insertion
- joining simple realignment targets on same chr
- joining simple realignment targets on different chr throws exception
- creating targets from three intersecting reads, same indel
- creating targets from three intersecting reads, two different indel
- creating targets from two disjoint reads
- creating targets for artificial reads: one-by-one
- creating targets for artificial reads: all-at-once (merged)
- creating indel targets for mason reads
- additional indel targets taken from consensus generator
NormalizationUtilsSuite:
- cannot move an indel left if there are no bases to it's left
- move a simple indel to farthest position left until bases run out
- move a simple indel to farthest position left, past length of indel
- cannot move a left normalized indel in a short tandem repeat
- move an indel in a short tandem repeat
- move an indel in a short tandem repeat of more than 2 bases, where shift is not an integer multiple of repeated sequence length
- moving a simple read with single deletion that cannot shift
- shift an indel left by 0 in a cigar
- shift an indel left by 1 in a cigar
- do not left align a complex read which is already left aligned
ReadGroupDictionarySuite:
- simple conversion to and from sam read group
- sample name must be set
- simple equality checks
- get samples from read group dictionary
- empty read group is empty
- merging a dictionary with itself should work
- round trip a record with all attributes set
RightOuterTreeRegionJoinSuite:
- Ensure same reference regions get passed together
- Overlapping reference regions
InnerShuffleRegionJoinSuite:
- Overlapping reference regions
- Multiple reference regions do not throw exception
FeatureDatasetSuite:
- round trip GTF format
- save GTF as GFF3 format
- save GTF as BED format
- save GTF as IntervalList format
- save GTF as NarrowPeak format
- save GFF3 as GTF format
- save GFF3 as BED format
- save GFF3 as IntervalList format
- save GFF3 as NarrowPeak format
- round trip GFF3 format
- ignore FASTA sequence in GFF3 file
- save BED as GTF format
- save BED as GFF3 format
- save BED as IntervalList format
- save BED as NarrowPeak format
- round trip BED6 format
- keeps sample metadata
- round trip BED12 format
- save to UCSC BED format
- save IntervalList as GTF format
- save IntervalList as GFF3 format
- save IntervalList as BED format
- save IntervalList as IntervalList format
- save IntervalList as NarrowPeak format
- round trip IntervalList format
- save NarrowPeak as GTF format
- save NarrowPeak as GFF3 format
- save NarrowPeak as BED format
- save NarrowPeak as IntervalList format
- save NarrowPeak as NarrowPeak format
- round trip NarrowPeak format
- sort by reference
- sort by reference and feature fields
- sort gene features by reference and gene structure
- sort transcript features by reference and gene structure
- sort exon features by reference and gene structure
- sort intron features by reference and gene structure
- correctly flatmaps CoverageDataset from FeatureDataset
- use broadcast join to pull down features mapped to targets
- use right outer broadcast join to pull down features mapped to targets
- use shuffle join to pull down features mapped to targets
- use right outer shuffle join to pull down features mapped to targets
- use left outer shuffle join to pull down features mapped to targets
- use full outer shuffle join to pull down features mapped to targets
- use shuffle join with group by to pull down features mapped to targets
- use right outer shuffle join with group by to pull down features mapped to targets
- union two feature rdds together
- obtain sequence dictionary contig lengths from header in IntervalList format
- don't lose any features when piping as BED format
- don't lose any features when piping as GTF format
- don't lose any features when piping as GFF3 format
- don't lose any features when piping as NarrowPeak format
- load parquet to sql, save, re-read from avro
- load partitioned parquet to sql, save, re-read from avro
2020-01-24 09:58:08 WARN  DatasetBoundSliceDataset:190 - Saving directly as Parquet from SQL. Options other than compression codec are ignored.
- transform features to slice genomic dataset
- transform features to coverage genomic dataset
- transform features to fragment genomic dataset
- transform features to read genomic dataset
- transform features to genotype genomic dataset
- transform features to variant genomic dataset
- transform features to variant context genomic dataset
- filter RDD bound features by feature type
- filter dataset bound features by feature type
- filter RDD bound features by feature types
- filter dataset bound features by feature types
- filter RDD bound features by gene
- filter dataset bound features by gene
- filter RDD bound features by genes
- filter dataset bound features by genes
- filter RDD bound features by transcript
- filter dataset bound features by transcript
- filter RDD bound features by transcripts
- filter dataset bound features by transcripts
- filter RDD bound features by exon
- filter dataset bound features by exon
- filter RDD bound features by exons
- filter dataset bound features by exons
- filter RDD bound features by score
- filter dataset bound features by score
- filter RDD bound features by parent
- filter dataset bound features by parent
- filter RDD bound features by parents
- filter dataset bound features by parents
- filter RDD bound features by attribute
- filter dataset bound features by attribute
- transform dataset via java API
AlphabetSuite:
- test size of a case-sensitive alphabet
- test apply of a case-sensitive alphabet
- test reverse complement of a case-sensitive alphabet
- test exact reverse complement of a case-sensitive alphabet
- test size of a case-insensitive alphabet
- test apply of a case-insensitive alphabet
- test reverse complement of a case-insensitive alphabet
- test exact reverse complement of a case-insensitive alphabet
- DNA alphabet
- map unknown bases to N
SortedGenomicDatasetSuite:
- testing that partition and sort provide correct outputs
- testing copartition maintains or adds sort
- testing that we don't drop any data on the right side even though it doesn't map to a partition on the left
- testing that sorted shuffleRegionJoin matches unsorted
- testing that sorted fullOuterShuffleRegionJoin matches unsorted
- testing that sorted rightOuterShuffleRegionJoin matches unsorted
- testing that sorted leftOuterShuffleRegionJoin matches unsorted
- testing that we can persist the sorted knowledge
VariantContextConverterSuite:
- Convert htsjdk site-only SNV to ADAM
- Convert somatic htsjdk site-only SNV to ADAM
- Convert htsjdk site-only CNV to ADAM
- Convert htsjdk SNV w/ genotypes w/ phase information to ADAM
- Convert htsjdk SNV with different variant filters to ADAM
- Convert htsjdk SNV with different genotype filters to ADAM
- Convert ADAM site-only SNV to htsjdk
- Convert ADAM SNV w/ genotypes to htsjdk
- Convert ADAM SNV w/ genotypes but bad SB to htsjdk with strict validation
2020-01-24 09:58:32 WARN  VariantContextConverter:2300 - Applying annotation extraction function <function2> to {"variant": {"referenceName": "1", "start": 0, "end": 1, "names": [], "splitFromMultiAllelic": false, "referenceAllele": "A", "alternateAllele": "T", "quality": null, "filtersApplied": null, "filtersPassed": null, "filtersFailed": [], "annotation": null}, "referenceName": null, "start": null, "end": null, "variantCallingAnnotations": {"filtersApplied": null, "filtersPassed": null, "filtersFailed": [], "downsampled": null, "baseQRankSum": null, "fisherStrandBiasPValue": 3.0, "rmsMapQ": 0.0, "mapq0Reads": 5, "mqRankSum": null, "readPositionRankSum": null, "genotypePriors": [], "genotypePosteriors": [], "vqslod": null, "culprit": null, "attributes": {}}, "sampleId": "NA12878", "sampleDescription": null, "processingDescription": null, "alleles": ["REF", "ALT"], "expectedAlleleDosage": null, "referenceReadDepth": null, "alternateReadDepth": null, "readDepth": null, "minReadDepth": null, "genotypeQuality": null, "genotypeLikelihoods": [], "nonReferenceLikelihoods": [], "strandBiasComponents": [0, 2], "splitFromMultiAllelic": false, "phased": false, "phaseSetId": null, "phaseQuality": null} failed with java.lang.IllegalArgumentException: requirement failed: Illegal strand bias components length. Must be empty or 4. In:
{"variant": {"referenceName": "1", "start": 0, "end": 1, "names": [], "splitFromMultiAllelic": false, "referenceAllele": "A", "alternateAllele": "T", "quality": null, "filtersApplied": null, "filtersPassed": null, "filtersFailed": [], "annotation": null}, "referenceName": null, "start": null, "end": null, "variantCallingAnnotations": {"filtersApplied": null, "filtersPassed": null, "filtersFailed": [], "downsampled": null, "baseQRankSum": null, "fisherStrandBiasPValue": 3.0, "rmsMapQ": 0.0, "mapq0Reads": 5, "mqRankSum": null, "readPositionRankSum": null, "genotypePriors": [], "genotypePosteriors": [], "vqslod": null, "culprit": null, "attributes": {}}, "sampleId": "NA12878", "sampleDescription": null, "processingDescription": null, "alleles": ["REF", "ALT"], "expectedAlleleDosage": null, "referenceReadDepth": null, "alternateReadDepth": null, "readDepth": null, "minReadDepth": null, "genotypeQuality": null, "genotypeLikelihoods": [], "nonReferenceLikelihoods": [], "strandBiasComponents": [0, 2], "splitFromMultiAllelic": false, "phased": false, "phaseSetId": null, "phaseQuality": null}.
- Convert ADAM SNV w/ genotypes but bad SB to htsjdk with lenient validation
- Convert htsjdk multi-allelic sites-only SNVs to ADAM
- Convert htsjdk multi-allelic SNVs to ADAM and back to htsjdk
- Convert gVCF reference records to ADAM
- Convert htsjdk variant context with no IDs to ADAM
- Convert htsjdk variant context with one ID to ADAM
- Convert htsjdk variant context with multiple IDs to ADAM
- Convert ADAM variant context with no names to htsjdk
- Convert ADAM variant context with one name to htsjdk
- Convert ADAM variant context with multiple names to htsjdk
- Convert ADAM variant context with null filters applied to htsjdk
- Convert ADAM variant context with no filters applied to htsjdk
- Convert ADAM variant context with passing filters to htsjdk
- Convert ADAM variant context with failing filters to htsjdk
- no phasing set going htsjdk->adam
- phased but no phase set info going htsjdk->adam
- set phase set and extract going htsjdk->adam
- no allelic depth going htsjdk->adam
- set allelic depth going htsjdk->adam
- no gt read depth going htsjdk->adam
- extract gt read depth going htsjdk->adam
- no min gt read depth going htsjdk->adam
- extract min gt read depth going htsjdk->adam
- no genotype quality going htsjdk->adam
- extract genotype quality going htsjdk->adam
- no phred likelihood going htsjdk->adam
- extract phred likelihoods going htsjdk->adam
- no strand bias info going htsjdk->adam
- extract strand bias info going htsjdk->adam
- no filters going htsjdk->adam
- filters passed going htsjdk->adam
- extract single filter going htsjdk->adam
- extract multiple filters going htsjdk->adam
- no fisher strand bias going htsjdk->adam
- extract fisher strand bias going htsjdk->adam
- no rms mapping quality going htsjdk->adam
- extract rms mapping quality going htsjdk->adam
- no mq0 going htsjdk->adam
- extract mq0 going htsjdk->adam
- no gt read depth going adam->htsjdk
- extract gt read depth going adam->htsjdk
- throw iae if missing one component of gt read depth going adam->htsjdk
- no depth going adam->htsjdk
- extract depth going adam->htsjdk
- no min depth going adam->htsjdk
- extract min depth going adam->htsjdk
- no quality going adam->htsjdk
- extract quality going adam->htsjdk
- no genotype likelihoods going adam->htsjdk
- extract genotype likelihoods going adam->htsjdk
- no strand bias going adam->htsjdk
- malformed strand bias going adam->htsjdk
- extract strand bias going adam->htsjdk
- no phasing info going adam->htsjdk
- unphased going adam->htsjdk
- phased but no ps/pq going adam->htsjdk
- phased but no pq going adam->htsjdk
- phased but no ps going adam->htsjdk
- phased going adam->htsjdk
- no filter info going adam->htsjdk
- if filters applied, must set passed/failed going adam->htsjdk
- filters passed going adam->htsjdk
- if filters failed, must set filters failed going adam->htsjdk
- single filter failed going adam->htsjdk
- multiple filters failed going adam->htsjdk
- no fisher strand bias going adam->htsjdk
- extract fisher strand bias going adam->htsjdk
- no rms mapping quality going adam->htsjdk
- extract rms mapping quality going adam->htsjdk
- no mapping quality 0 reads going adam->htsjdk
- extract mapping quality 0 reads going adam->htsjdk
- no names set going htsjdk->adam
- single name set going htsjdk->adam
- multiple names set going htsjdk->adam
- no quality going htsjdk->adam
- quality set going htsjdk->adam
- no filters applied going htsjdk->adam
- filters applied and passed going htsjdk->adam
- single filter applied and failed going htsjdk->adam
- multiple filters applied and failed going htsjdk->adam
- no names set adam->htsjdk
- set a single name adam->htsjdk
- set multiple names adam->htsjdk
- no qual set adam->htsjdk
- qual is set adam->htsjdk
- no filters applied adam->htsjdk
- null filters applied adam->htsjdk
- filters passed adam->htsjdk
- if filter failed, must have filters adam->htsjdk
- single filter failed adam->htsjdk
- multiple filters failed adam->htsjdk
- no ancestral allele set going htsjdk->adam
- ancestral allele set going htsjdk->adam
- no dbsnp membership set going htsjdk->adam
- dbsnp membership set going htsjdk->adam
- no hapmap2 membership set going htsjdk->adam
- hapmap2 membership set going htsjdk->adam
- no hapmap3 membership set going htsjdk->adam
- hapmap3 membership set going htsjdk->adam
- no validated set going htsjdk->adam
- validated set going htsjdk->adam
- no 1000G membership set going htsjdk->adam
- 1000G membership set going htsjdk->adam
- not somatic going htsjdk->adam
- somatic going htsjdk->adam
- no allele count going htsjdk->adam
- single allele count going htsjdk->adam
- multiple allele counts going htsjdk->adam
- no allele frequency going htsjdk->adam
- single allele frequency going htsjdk->adam
- single allele frequency is +Inf going htsjdk->adam
- single allele frequency is -Inf going htsjdk->adam
- multiple allele frequencies going htsjdk->adam
- no CIGAR going htsjdk->adam
- single CIGAR going htsjdk->adam
- multiple CIGARs going htsjdk->adam
- no read depth going htsjdk->adam
- single read depth going htsjdk->adam
- multiple read depths going htsjdk->adam
- no forward read depth going htsjdk->adam
- single forward read depth going htsjdk->adam
- multiple forward read depths going htsjdk->adam
- no reverse read depth going htsjdk->adam
- single reverse read depth going htsjdk->adam
- multiple reverse read depths going htsjdk->adam
- no ancestral allele set adam->htsjdk
- ancestral allele set adam->htsjdk
- no dbsnp membership set adam->htsjdk
- dbsnp membership set adam->htsjdk
- no hapmap2 membership set adam->htsjdk
- hapmap2 membership set adam->htsjdk
- no hapmap3 membership set adam->htsjdk
- hapmap3 membership set adam->htsjdk
- no validated set adam->htsjdk
- validated set adam->htsjdk
- no 1000G membership set adam->htsjdk
- 1000G membership set adam->htsjdk
- no allele count set adam->htsjdk
- allele count set adam->htsjdk
- no allele frequency set adam->htsjdk
- allele frequency set adam->htsjdk
- no cigar set adam->htsjdk
- cigar set adam->htsjdk
- no read depth set adam->htsjdk
- read depth set adam->htsjdk
- read depth without reference read depth
- reference read depth without read depth
- no forward read depth set adam->htsjdk
- forward read depth set adam->htsjdk
- reference forward read depth without forward read depth
- forward read depth without reference forward read depth
- no reverse read depth set adam->htsjdk
- reverse read depth set adam->htsjdk
- reference reverse read depth without reverse read depth
- reverse read depth without reference reverse read depth
- VCF INFO attribute Number=0 Type=Flag adam->htsjdk
- VCF INFO attribute Number=4 Type=Flag adam->htsjdk unsupported, strict !!! IGNORED !!!
- VCF INFO attribute Number=1 Type=Integer adam->htsjdk
- VCF INFO attribute Number=4 Type=Integer adam->htsjdk
- VCF INFO attribute Number=A Type=Integer adam->htsjdk
- VCF INFO attribute Number=R Type=Integer adam->htsjdk
- VCF INFO attribute Number=R Type=String adam->htsjdk
- VCF INFO attribute Number=G Type=String adam->htsjdk not supported
- VCF INFO attribute Number=0 Type=Flag htsjdk->adam
- VCF INFO attribute Number=1 Type=Integer htsjdk->adam
- VCF INFO attribute Number=4 Type=Integer htsjdk->adam
- VCF INFO attribute Number=4 Type=Float htsjdk->adam
- VCF INFO attribute Number=A Type=Integer htsjdk->adam
- VCF INFO attribute Number=R Type=Integer htsjdk->adam
- VCF INFO attribute Number=R Type=String htsjdk->adam
- VCF INFO attribute Number=G Type=String htsjdk->adam not supported
- VCF FORMAT attribute Number=0 Type=Flag adam->htsjdk not supported
- VCF FORMAT attribute Number=1 Type=Integer adam->htsjdk
- VCF FORMAT attribute Number=4 Type=Integer adam->htsjdk
- VCF FORMAT attribute Number=A Type=Integer adam->htsjdk
- VCF FORMAT attribute Number=R Type=Integer adam->htsjdk
- VCF FORMAT attribute Number=R Type=String adam->htsjdk
- VCF FORMAT attribute Number=0 Type=Flag htsjdk->adam is not supported
- VCF FORMAT attribute Number=1 Type=Integer htsjdk->adam
- VCF FORMAT attribute Number=4 Type=Integer htsjdk->adam
- VCF FORMAT attribute Number=4 Type=Float htsjdk->adam
- VCF FORMAT attribute Number=A Type=Integer htsjdk->adam
- VCF FORMAT attribute Number=R Type=Integer htsjdk->adam
- VCF FORMAT attribute Number=R Type=String htsjdk->adam
- VCF FORMAT attribute Number=G Type=String htsjdk->adam
- respect end position for symbolic alts
FastqRecordConverterSuite:
- test read name suffix and index of pair must match
- test parseReadInFastq, read suffix removal
- test parseReadInFastq, read metadata removal
- test parseReadInFastq, read quality shorter than read length, padded with B
- test parseReadInFastq, read quality longer than read length 
- test parseReadInFastq, no read quality
- testing FastqRecordConverter.convertPair with valid input
- testing FastqRecordConverter.convertPair with 7-line invalid input
- testing FastqRecordConverter.convertPair with invalid input: first read length and qual don't match
- testing FastqRecordConverter.convertPair with invalid input: second read length and qual don't match
- testing FastqRecordConverter.convertFragment with valid input
- testing FastqRecordConverter.convertFragment with another valid input having /1, /2 suffixes
- testing FastqRecordConverter.convertFragment with invalid input: different read names
- testing FastqRecordConverter.convertRead with valid input
- testing FastqRecordConverter.convertRead with valid input: setFirstOfPair set to true
- testing FastqRecordConverter.convertRead with valid input: setSecondOfPair set to true
- testing FastqRecordConverter.convertRead with valid input: setFirstOfPair and setSecondOfPair both true
- testing FastqRecordConverter.convertRead with valid input, no qual, strict
- testing FastqRecordConverter.convertRead with valid input, no qual, not strict
AttributeSuite:
- test SAMTagAndValue parsing
- Attributes can be correctly re-encoded as text SAM tags
GFF3HeaderWriterSuite:
- write gff3 header pragma
BinQualitiesSuite:
- make a quality score bin
- can't have a quality score bin with negative score
- can't have a quality score bin with high score below low
- can't have a quality score bin with high score above 255
- can't have a quality score bin with score outside
- make a quality score bin from a string
- quality score bin must have exactly 3 elements
- quality score bin must be integers
- must define at least one bin
- build multiple bins
- rewrite quality scores for a read
- rewriting quality scores fails if bins overlap
- rewriting quality scores fails if base is out of bounds
- skip read if qualities are null
- rewrite a read
IndexedFastaFileSuite:
- correctly generates sequence dictionary from .dict file
- correctly gets sequence
- fails when fai index is not provided
2020-01-24 09:58:33 WARN  IndexedFastaFile:190 - Caught exception java.lang.NullPointerException when loading FASTA sequence dictionary. Using empty dictionary instead.
- passes when dict is not provided and ValidationStringency = LENIENT
SAMRecordConverterSuite:
- testing the fields in an Alignment obtained from a mapped samRecord conversion
- testing the fields in an Alignment obtained from an unmapped samRecord conversion
- '*' quality gets nulled out
- don't keep denormalized fields
ADAMContextSuite:
- ctr is accessible
- load from an empty directory
- sc.loadParquet should not fail on unmapped reads
- sc.loadParquet should not load a file without a type specified
- can read a small .SAM file
- can read a small .SAM file with a bad header with lenient validation
- loading a sam file with a bad header and strict stringency should fail
- can read a small .CRAM file
- can read a small .SAM with all attribute tag types
- can filter a .SAM file based on quality
- Can convert to phred
- Can convert from phred
- Can read a .gtf file
- Can read a .bed file
- Can read a BED 12 file
- Can read a .narrowPeak file
- Can read a .interval_list file
2020-01-24 09:58:39 WARN  VariantContextConverter:1662 - Saw invalid info field java.lang.IllegalArgumentException: Multivalued flags are not supported for INFO lines: INFO=<ID=ABADFLAG,Number=.,Type=Flag,Description="A no good, very bad flag.">. Ignoring...
2020-01-24 09:58:39 WARN  VariantContextConverter:2169 - Generating field extractor from header line INFO=<ID=ABADFLAG,Number=.,Type=Flag,Description="A no good, very bad flag."> failed: java.lang.IllegalArgumentException: Multivalue flags are not supported for INFO lines: INFO=<ID=ABADFLAG,Number=.,Type=Flag,Description="A no good, very bad flag.">
- can read a small .vcf file with a validation issue
- can read a small .vcf file
2020-01-24 09:58:39 WARN  VCFInputFormat:218 - file:/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/2.11.12/test-classes/test.vcf.gz is not splittable, consider using block-compressed gzip (BGZF)
- can read a gzipped .vcf file
- can read a vcf file with an empty alt
- can read a BGZF gzipped .vcf file with .gz file extension
- can read a BGZF gzipped .vcf file with .bgz file extension
- can read a vcf file with a projection
- can read an uncompressed BCFv2.2 file !!! IGNORED !!!
- can read a BGZF compressed BCFv2.2 file !!! IGNORED !!!
- loadIndexedVcf with 1 ReferenceRegion
- loadIndexedVcf with multiple ReferenceRegions
- load block compressed interleaved fastq
- import records from interleaved FASTQ: 1
- import records from interleaved FASTQ: 2
- import records from interleaved FASTQ: 3
- import records from interleaved FASTQ: 4
- import block compressed single fastq
- import records from single ended FASTQ: 1
- import records from single ended FASTQ: 2
- import records from single ended FASTQ: 3
- import records from single ended FASTQ: 4
- filter on load using the filter2 API
- saveAsParquet with file path
- saveAsParquet with file path, block size, page size
- saveAsParquet with save args
- read a HLA fasta from GRCh38
- read a gzipped fasta file
- read a fasta file with comments, gaps, and translation stops
- loadIndexedBam with 1 ReferenceRegion
- loadIndexedBam with multiple ReferenceRegions
- loadIndexedBam with multiple ReferenceRegions and indexed bams
- loadIndexedBam with multiple ReferenceRegions and a directory of indexed bams
- loadIndexedBam should throw exception without an index file
- loadIndexedBam should work with indexed file with index naming format <filename>.bai
- loadIndexedBam glob should throw exception without an index file
- loadBam with a glob
- loadBam with a directory
- load vcf with a glob
- load vcf from a directory
- load gvcf which contains a multi-allelic row from a directory
- load and save gvcf which contains rows without likelihoods
- parse annotations for multi-allelic rows
- load parquet with globs
- bad glob should fail
- empty directory should fail
- can read a SnpEff-annotated .vcf file
- loadAlignments should not fail on single-end and paired-end fastq reads
- load queryname sorted sam as fragments
- load query grouped sam as fragments
- load paired fastq
- load paired fastq without cache
- load paired fastq as fragments
- load paired fastq as fragments without cache
- load HTSJDK sequence dictionary
- load Bedtools .genome file as sequence dictionary
- load Bedtools .genome.txt file as sequence dictionary
- load UCSC Genome Browser chromInfo.txt file as sequence dictionary
- load unrecognized file extension as sequence dictionary fails
- load BED features with Bedtools .genome file as sequence dictionary
- load BED features with Bedtools .genome file as sequence dictionary, no matching features
- convert program record
- load program record from sam file
- load alignments from data frame
- load features from data frame
- load fragments from data frame
- load genotypes from data frame with default header lines
- load genotypes from data frame with empty header lines
- load reads from data frame
- load sequences from data frame
- load slices from data frame
- load variant contexts from data frame with default header lines
- load variant contexts from data frame with empty header lines
- load variants from data frame with default header lines
- load variants from data frame with empty header lines
- load alignments with metadata from data frame
- load features with metadata from data frame
- load fragments with metadata from data frame
- load genotypes with metadata from data frame
- load variant contexts with metadata from data frame
- load variants with metadata from data frame
- read a fasta file with short sequences as sequences
- read a fasta file with long sequences as sequences
- read a fasta file with short sequences as slices
- read a fasta file with long sequences as slices
CycleCovariateSuite:
- compute covariates for an unpaired read on the negative strand
- compute covariates for a first-of-pair read on the negative strand
- compute covariates for a second-of-pair read on the negative strand
- compute covariates for an unpaired read on the positive strand
- compute covariates for a first-of-pair read on the positive strand
- compute covariates for a second-of-pair read on the positive strand
AlignmentConverterSuite:
- testing the fields in a converted ADAM Read
- converting a read with null quality is OK
- convert a read to fastq
- reverse complement reads when converting to fastq
- converting to fastq with unmapped reads where  read reverse complemented flag (Ox10) was NOT set
- converting to fastq with unmapped reads where reverse complemented flag (0x10) was set
- converting a fragment with no alignments should yield unaligned reads
- converting a fragment with alignments should restore the alignments
- read negative strand is propagated even when not mapped
ConsensusGeneratorFromKnownsSuite:
- no consensuses for empty target
- no consensuses for reads that don't overlap a target
- return a consensus for read overlapping a single target
RichCigarSuite:
- moving 2 bp from a deletion to a match operator
- moving 2 bp from a insertion to a match operator
- moving 1 base in a two element cigar
- move to start of read
- process right clipped cigar
- process left clipped cigar
- process cigar clipped on both ends
MDTaggingSuite:
- test adding MDTags over boundary
- test adding MDTags; reads span full contig
- test adding MDTags; reads start inside first fragment
- test adding MDTags; reads end inside last fragment
- test adding MDTags; reads start inside first fragment and end inside last fragment
- test adding MDTags; reads start and end in middle fragements
2020-01-24 09:59:38 WARN  BlockManager:66 - Putting block rdd_5_3 failed due to exception java.lang.Exception: Contig chr2 not found in reference map with keys: chr1.
2020-01-24 09:59:38 WARN  BlockManager:66 - Block rdd_5_3 could not be removed as it was not found on disk or in memory
2020-01-24 09:59:38 ERROR Executor:91 - Exception in task 3.0 in stage 2.0 (TID 11)
java.lang.Exception: Contig chr2 not found in reference map with keys: chr1
	at org.bdgenomics.adam.util.ReferenceContigMap$$anonfun$extract$1.apply(ReferenceContigMap.scala:63)
	at org.bdgenomics.adam.util.ReferenceContigMap$$anonfun$extract$1.apply(ReferenceContigMap.scala:63)
	at scala.collection.MapLike$class.getOrElse(MapLike.scala:128)
	at scala.collection.AbstractMap.getOrElse(Map.scala:59)
	at org.bdgenomics.adam.util.ReferenceContigMap.extract(ReferenceContigMap.scala:61)
	at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1$$anonfun$apply$2.apply(MDTagging.scala:76)
	at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1$$anonfun$apply$2.apply(MDTagging.scala:71)
	at scala.Option$WithFilter.map(Option.scala:207)
	at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1.apply(MDTagging.scala:71)
	at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1.apply(MDTagging.scala:69)
	at scala.collection.Iterator$$anon$11.next(Iterator.scala:410)
	at org.apache.spark.storage.memory.MemoryStore.putIterator(MemoryStore.scala:222)
	at org.apache.spark.storage.memory.MemoryStore.putIteratorAsValues(MemoryStore.scala:299)
	at org.apache.spark.storage.BlockManager$$anonfun$doPutIterator$1.apply(BlockManager.scala:1165)
	at org.apache.spark.storage.BlockManager$$anonfun$doPutIterator$1.apply(BlockManager.scala:1156)
	at org.apache.spark.storage.BlockManager.doPut(BlockManager.scala:1091)
	at org.apache.spark.storage.BlockManager.doPutIterator(BlockManager.scala:1156)
	at org.apache.spark.storage.BlockManager.getOrElseUpdate(BlockManager.scala:882)
	at org.apache.spark.rdd.RDD.getOrCompute(RDD.scala:335)
	at org.apache.spark.rdd.RDD.iterator(RDD.scala:286)
	at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90)
	at org.apache.spark.scheduler.Task.run(Task.scala:123)
	at org.apache.spark.executor.Executor$TaskRunner$$anonfun$10.apply(Executor.scala:408)
	at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1360)
	at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:414)
	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
	at java.lang.Thread.run(Thread.java:748)
2020-01-24 09:59:38 WARN  TaskSetManager:66 - Lost task 3.0 in stage 2.0 (TID 11, localhost, executor driver): java.lang.Exception: Contig chr2 not found in reference map with keys: chr1
	at org.bdgenomics.adam.util.ReferenceContigMap$$anonfun$extract$1.apply(ReferenceContigMap.scala:63)
	at org.bdgenomics.adam.util.ReferenceContigMap$$anonfun$extract$1.apply(ReferenceContigMap.scala:63)
	at scala.collection.MapLike$class.getOrElse(MapLike.scala:128)
	at scala.collection.AbstractMap.getOrElse(Map.scala:59)
	at org.bdgenomics.adam.util.ReferenceContigMap.extract(ReferenceContigMap.scala:61)
	at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1$$anonfun$apply$2.apply(MDTagging.scala:76)
	at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1$$anonfun$apply$2.apply(MDTagging.scala:71)
	at scala.Option$WithFilter.map(Option.scala:207)
	at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1.apply(MDTagging.scala:71)
	at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1.apply(MDTagging.scala:69)
	at scala.collection.Iterator$$anon$11.next(Iterator.scala:410)
	at org.apache.spark.storage.memory.MemoryStore.putIterator(MemoryStore.scala:222)
	at org.apache.spark.storage.memory.MemoryStore.putIteratorAsValues(MemoryStore.scala:299)
	at org.apache.spark.storage.BlockManager$$anonfun$doPutIterator$1.apply(BlockManager.scala:1165)
	at org.apache.spark.storage.BlockManager$$anonfun$doPutIterator$1.apply(BlockManager.scala:1156)
	at org.apache.spark.storage.BlockManager.doPut(BlockManager.scala:1091)
	at org.apache.spark.storage.BlockManager.doPutIterator(BlockManager.scala:1156)
	at org.apache.spark.storage.BlockManager.getOrElseUpdate(BlockManager.scala:882)
	at org.apache.spark.rdd.RDD.getOrCompute(RDD.scala:335)
	at org.apache.spark.rdd.RDD.iterator(RDD.scala:286)
	at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90)
	at org.apache.spark.scheduler.Task.run(Task.scala:123)
	at org.apache.spark.executor.Executor$TaskRunner$$anonfun$10.apply(Executor.scala:408)
	at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1360)
	at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:414)
	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
	at java.lang.Thread.run(Thread.java:748)

2020-01-24 09:59:38 ERROR TaskSetManager:70 - Task 3 in stage 2.0 failed 1 times; aborting job
- try realigning a read on a missing contig, stringency == STRICT
2020-01-24 09:59:39 WARN  MDTagging:190 - Caught exception when processing read chr2: java.lang.Exception: Contig chr2 not found in reference map with keys: chr1
- try realigning a read on a missing contig, stringency == LENIENT
FileExtensionsSuite:
- ends in gzip extension
- is a vcf extension
PhredUtilsSuite:
- convert low phred score to log and back
- convert high phred score to log and back
- convert overflowing phred score to log and back and clip
- convert negative zero log probability to phred and clip
- round trip log probabilities
ReadDatasetSuite:
- create a new read genomic dataset
- create a new read genomic dataset with sequence dictionary
- save as parquet
- round trip as parquet
- save as fastq
- save as single file fastq
- filter read genomic dataset by reference region
- broadcast region join reads and features
- shuffle region join reads and features
- convert reads to alignments
- convert reads to sequences
- convert reads to slices
AlignmentDatasetSuite:
- sorting reads
- unmapped reads go at the end when sorting
- coverage does not fail on unmapped reads
- computes coverage
- computes coverage with multiple samples
- merges adjacent records with equal coverage values
- sorting reads by reference index
- round trip from ADAM to SAM and back to ADAM produces equivalent Read values
- round trip with single CRAM file produces equivalent Read values
- round trip with sharded CRAM file produces equivalent Read values
- SAM conversion sets read mapped flag properly
- load long FASTQ reads
- load FASTQ with no bases
- convert malformed FASTQ (no quality scores) => SAM => well-formed FASTQ => SAM
- round trip from ADAM to FASTQ and back to ADAM produces equivalent Read values
- round trip from ADAM to paired-FASTQ and back to ADAM produces equivalent Read values
- writing a small file with tags should produce the expected result
- writing a small sorted file as SAM should produce the expected result
- writing unordered sam from unordered sam
- writing ordered sam from unordered sam
- write single sam file back
- write single bam file back
- saveAsParquet with save args, sequence dictionary, and read group dictionary
- load parquet to sql, save, re-read from avro
- load from sam, save as partitioned parquet, and re-read from partitioned parquet
- save as SAM format
- save as sorted SAM format
- save as BAM format
- save as sorted BAM format
- save as FASTQ format
- save as ADAM parquet format
- saveAsSam SAM format
- saveAsSam SAM format single file
- saveAsSam sorted SAM format single file
- saveAsSam BAM format
- saveAsSam BAM format single file
- saveAsSam sorted BAM format single file
- saveAsFastq
- saveAsFastq as single file
- saveAsFastq with original base qualities
- saveAsFastq sorted by read name
- saveAsFastq sorted by read name with original base qualities
2020-01-24 10:00:14 WARN  RDDBoundAlignmentDataset:190 - Found 20 read names that don't occur exactly twice:
	1x:	20

Samples:
	simread:1:237728409:true
	simread:1:195211965:false
	simread:1:163841413:false
	simread:1:231911906:false
	simread:1:26472783:false
	simread:1:165341382:true
	simread:1:240344442:true
	simread:1:50683371:false
	simread:1:240997787:true
	simread:1:14397233:false
	simread:1:207027738:true
	simread:1:20101800:true
	simread:1:101556378:false
	simread:1:37577445:false
	simread:1:189606653:true
	simread:1:5469106:true
	simread:1:186794283:true
	simread:1:89554252:false
	simread:1:153978724:false
	simread:1:169801933:true
- saveAsFastq paired FASTQ
2020-01-24 10:00:15 WARN  RDDBoundAlignmentDataset:190 - Found 20 read names that don't occur exactly twice:
	1x:	20

Samples:
	simread:1:237728409:true
	simread:1:195211965:false
	simread:1:163841413:false
	simread:1:231911906:false
	simread:1:26472783:false
	simread:1:165341382:true
	simread:1:240344442:true
	simread:1:50683371:false
	simread:1:240997787:true
	simread:1:14397233:false
	simread:1:207027738:true
	simread:1:20101800:true
	simread:1:101556378:false
	simread:1:37577445:false
	simread:1:189606653:true
	simread:1:5469106:true
	simread:1:186794283:true
	simread:1:89554252:false
	simread:1:153978724:false
	simread:1:169801933:true
- saveAsPairedFastq
2020-01-24 10:00:16 WARN  RDDBoundAlignmentDataset:190 - Found 20 read names that don't occur exactly twice:
	1x:	20

Samples:
	simread:1:237728409:true
	simread:1:195211965:false
	simread:1:163841413:false
	simread:1:231911906:false
	simread:1:26472783:false
	simread:1:165341382:true
	simread:1:240344442:true
	simread:1:50683371:false
	simread:1:240997787:true
	simread:1:14397233:false
	simread:1:207027738:true
	simread:1:20101800:true
	simread:1:101556378:false
	simread:1:37577445:false
	simread:1:189606653:true
	simread:1:5469106:true
	simread:1:186794283:true
	simread:1:89554252:false
	simread:1:153978724:false
	simread:1:169801933:true
- saveAsPairedFastq as single files
- don't lose any reads when piping as SAM
2020-01-24 10:00:28 WARN  OutFormatterRunner:190 - Piped command List(sleep, 10) timed out after 5 seconds.
2020-01-24 10:00:28 WARN  OutFormatterRunner:190 - Piped command List(sleep, 10) timed out after 5 seconds.
- lose all records when a command times out
- lose no records without a timeout
2020-01-24 10:00:49 WARN  OutFormatterRunner:190 - Piped command List(python, /tmp/adamTestMvnM5Ay7Lc/spark-a4d0c7da-2331-4d8b-9004-fb69d6a9074e/userFiles-2f0e0b68-97af-4c68-ab5c-113b91df2bc6/timeout.py) timed out after 5 seconds.
2020-01-24 10:00:49 WARN  OutFormatterRunner:190 - Piped command List(python, /tmp/adamTestMvnM5Ay7Lc/spark-a4d0c7da-2331-4d8b-9004-fb69d6a9074e/userFiles-2f0e0b68-97af-4c68-ab5c-113b91df2bc6/timeout.py) timed out after 5 seconds.
- lose some records when a command times out
- don't lose any reads when piping as SAM using java pipe
- don't lose any reads when piping as BAM
- don't lose any reads when piping fastq to sam
- can properly set environment variables inside of a pipe
- read vcf from alignment pipe !!! IGNORED !!!
- use broadcast join to pull down reads mapped to targets
- use broadcast join against to pull down reads mapped to targets
- use right outer broadcast join to pull down reads mapped to targets
- use right outer broadcast join against to pull down reads mapped to targets
- use shuffle join with feature spanning partitions
- use shuffle join to pull down reads mapped to targets
- use shuffle join with flankSize to pull down reads mapped close to targets
- use right outer shuffle join to pull down reads mapped to targets
- use left outer shuffle join to pull down reads mapped to targets
- use full outer shuffle join to pull down reads mapped to targets
- use shuffle join with group by to pull down reads mapped to targets
- use right outer shuffle join with group by to pull down reads mapped to targets
- cannot provide empty quality score bins
- cannot provide bins with a gap
- cannot provide overlapping bins
- binning quality scores in reads succeeds even if reads have no quality scores
- bin quality scores in reads
- union two read files together
- test k-mer counter
- test dataset based k-mer counter
- transform reads to slice genomic dataset
- transform reads to coverage genomic dataset
- transform reads to feature genomic dataset
- transform reads to fragment genomic dataset
- transform reads to genotype genomic dataset
loading /tmp/adamTestMvnM5Ay7Lc/TempSuite888010868824520678.adam as parquet into RDD...
loading /tmp/adamTestMvnM5Ay7Lc/TempSuite2628454560249017766.adam as parquet into RDD...
- transform reads to variant genomic dataset
- cannot have a null processing step ID
- convert a processing description to htsjdk
- GenomicDataset.sort does not fail on unmapped reads
- GenomicDataset.sortLexicographically does not fail on unmapped reads
- left normalize indels
- running base recalibration with downsampling doesn't drop reads
- filter RDD bound alignments by MAPQ
- filter dataset bound alignments by MAPQ
- filter RDD bound unaligned alignments
- filter dataset bound unaligned alignments
- filter RDD bound unpaired alignments
- filter dataset bound unpaired alignments
- filter RDD bound duplicate alignments
- filter dataset bound duplicate alignments
- filter RDD bound alignments to primary alignments
- filter dataset bound alignments to primary alignments
- filter RDD bound alignments to read group
- filter dataset bound alignments to read group
- filter RDD bound alignments to read groups
- filter dataset bound alignments to read groups
- filter RDD bound alignments to sample
- filter dataset bound alignments to sample
- filter RDD bound alignments to samples
- filter dataset bound alignments to samples
- sort by read name
- transform dataset via java API
- convert alignments to reads
SmithWatermanSuite:
- gather max position from simple scoring matrix
- gather max position from irregular scoring matrix
- gather max position from irregular scoring matrix with deletions
- score simple alignment with constant gap
- score irregular scoring matrix
- score irregular scoring matrix with indel
- can unroll cigars correctly
- execute simple trackback
- execute trackback with indel
- run end to end smith waterman for simple reads
- run end to end smith waterman for short sequences with indel
- run end to end smith waterman for longer sequences with snp
- run end to end smith waterman for longer sequences with short indel
- run end to end smith waterman for shorter sequence in longer sequence
- run end to end smith waterman for shorter sequence in longer sequence, with indel
- smithWaterman - simple alignment
MdTagSuite:
- null md tag
- zero length md tag
- md tag with non-digit initial value
- md tag invalid base
- md tag, pure insertion
- md tag, pure insertion, test 2
- md tag pure insertion equality
- md tag equality and hashcode
- valid md tags
- get start of read with no mismatches or deletions
- get start of read with no mismatches, but with a deletion at the start
- get start of read with mismatches at the start
- get end of read with no mismatches or deletions
- check that mdtag and rich record return same end
- get end of read with no mismatches, but a deletion at end
- CIGAR with N operator
- CIGAR with multiple N operators
- CIGAR with P operators
- Get correct matches for mdtag with insertion
- Get correct matches for mdtag with mismatches and insertion
- Get correct matches for mdtag with insertion between mismatches
- Get correct matches for mdtag with intron between mismatches
- Get correct matches for mdtag with intron and deletion between mismatches
- Throw exception when number of deleted bases in mdtag disagrees with CIGAR
- Get correct matches for mdtag with mismatch, insertion and deletion
- Get correct matches for mdtag with mismatches, insertion and deletion
- Get correct matches for MDTag with mismatches and deletions
- Get correct matches base from MDTag and CIGAR with N
- get end of read with mismatches and a deletion at end
- get correct string out of mdtag with no mismatches
- get correct string out of mdtag with mismatches at start
- get correct string out of mdtag with deletion at end
- get correct string out of mdtag with mismatches at end
- get correct string out of complex mdtag
- check complex mdtag
- get gapped reference
- move a cigar alignment by two for a read
- rewrite alignment to all matches
- rewrite alignment to two mismatches followed by all matches
- rewrite alignment to include a deletion but otherwise all matches
- rewrite alignment to include an insertion at the start of the read but otherwise all matches
- create new md tag from read vs. reference, perfect match
- create new md tag from read vs. reference, perfect alignment match, 1 mismatch
- create new md tag from read vs. reference, alignment with deletion
- create new md tag from read vs. reference, alignment with insert
- handle '=' and 'X' operators
- CIGAR/MD tag mismatch should cause errors
GenomicDatasetSuite:
- processing a command that is the spark root directory should return an absolute path
- processing a command that is just a single word should do nothing
- processing a command should handle arguments that include spaces
- processing a command that is a single substitution should succeed
- processing a command that is multiple words should split the string
- process a command that is multiple words with a replacement
- process a command that is multiple words with multiple replacements
ParallelFileMergerSuite:
- cannot write both empty gzip block and cram eof
- buffer size must be non-negative
- get the size of several files
- block size must be positive and non-zero when trying to merge files
- must provide files to merge
- if two files are both below the block size, they should merge into one shard
- merge two files where one is greater than the block size
- merge a sharded sam file
- merge a sharded bam file
- merge a sharded cram file
- can't turn a negative index into a path
- generate a path from an index
IndelTableSuite:
- check for indels in a region with known indels
- check for indels in a contig that doesn't exist
- check for indels in a region without known indels
- build indel table from rdd of variants
SnpTableSuite:
- create an empty snp table
- create a snp table from variants on multiple contigs
- create a snp table from a larger set of variants
- perform lookups on multi-contig snp table
- perform lookups on larger snp table
RealignIndelsSuite:
- map reads to targets
- checking mapping to targets for artificial reads
- checking alternative consensus for artificial reads
- checking extraction of reference from reads
- checking realigned reads for artificial input
- checking realigned reads for artificial input with reference file
- checking realigned reads for artificial input using knowns
- checking realigned reads for artificial input using knowns and reads
- skip realigning reads if target is highly covered
- skip realignment if target is an insufficient LOD improvement
- realign reads to an insertion
- test mismatch quality scoring
- test mismatch quality scoring for no mismatches
- test mismatch quality scoring for offset
- test mismatch quality scoring with early exit
- test mismatch quality scoring after unpacking read
- we shouldn't try to realign a region with no target
- we shouldn't try to realign reads with no indel evidence
- test OP and OC tags
- realign a read with an insertion that goes off the end of the read
- if realigning a target doesn't improve the LOD, don't drop reads
- extract seq/qual from a read with no clipped bases
- extract seq/qual from a read with clipped bases at start
- extract seq/qual from a read with clipped bases at end
- if unclip is selected, don't drop base when extracting from a read with clipped bases
- get cigar and coordinates for read that spans indel, no clipped bases
- get cigar and coordinates for read that spans deletion, clipped bases at start
- get cigar and coordinates for read that falls wholly before insertion
- get cigar and coordinates for read that falls wholly after insertion
- get cigar and coordinates for read that falls wholly after deletion
- get cigar and coordinates for read that partially spans insertion, no clipped bases
- get cigar and coordinates for read that partially spans insertion, clipped bases at end
- get cigar and coordinates for read that partially spans insertion, clipped bases both ends
BaseQualityRecalibrationSuite:
- BQSR Test Input #1 w/ VCF Sites without caching
- BQSR Test Input #1 w/ VCF Sites with caching
- BQSR Test Input #1 w/ VCF Sites with serialized caching
DinucCovariateSuite:
- computing dinucleotide pairs for a single base sequence should return (N,N)
- compute dinucleotide pairs for a string of all valid bases
- compute dinucleotide pairs for a string with an N
- compute covariates for a read on the negative strand
- compute covariates for a read on the positive strand
SequenceDictionarySuite:
- Convert from sam sequence record and back
- Convert from SAM sequence dictionary file (with extra fields)
- merge into existing dictionary
- Convert from SAM sequence dictionary and back
- Can retrieve sequence by name
- SequenceDictionary's with same single element are equal
- SequenceDictionary's with same two elements are equals
- SequenceDictionary's with different elements are unequal
- SequenceDictionaries with same elements in different order are compatible
- isCompatible tests equality on overlap
- The addition + works correctly
- The append operation ++ works correctly
- ContainsRefName works correctly for different string types
- Apply on name works correctly for different String types
- convert from sam sequence record and back
- convert from sam sequence dictionary and back
- conversion to sam sequence dictionary has correct sort order
- load sequence dictionary from VCF file
- empty sequence dictionary must be empty
- test filter to reference name
- test filter to reference names
- test filter to reference name by function
GenomicPositionPartitionerSuite:
- partitions the UNMAPPED ReferencePosition into the top partition
- if we do not have a contig for a record, we throw an IAE
- partitioning into N pieces on M total sequence length, where N > M, results in M partitions
- correctly partitions a single dummy sequence into two pieces
- correctly counts cumulative lengths
- correctly partitions positions across two dummy sequences
- test that we can range partition ADAMRecords
- test that we can range partition ADAMRecords indexed by sample
- test that simple partitioning works okay on a reasonable set of ADAMRecords
- test indexed ReferencePosition partitioning works on a set of indexed ADAMRecords
CoverageSuite:
- Convert to coverage from valid Feature
- Convert to coverage from valid Feature with sampleId
- Convert to coverage from Feature with null/empty contigName fails with correct error
- Convert to coverage from Feature with no start/end position fails with correct error
- Convert to coverage from Feature with no score fails with correct error
InnerTreeRegionJoinSuite:
- Ensure same reference regions get passed together
- Overlapping reference regions
- Multiple reference regions do not throw exception
VariantDatasetSuite:
- union two variant genomic datasets together
- round trip to parquet
- save and reload from partitioned parquet
- use broadcast join to pull down variants mapped to targets
- use right outer broadcast join to pull down variants mapped to targets
- use shuffle join to pull down variants mapped to targets
- use right outer shuffle join to pull down variants mapped to targets
- use left outer shuffle join to pull down variants mapped to targets
- use full outer shuffle join to pull down variants mapped to targets
- use shuffle join with group by to pull down variants mapped to targets
- use right outer shuffle join with group by to pull down variants mapped to targets
- convert back to variant contexts
- load parquet to sql, save, re-read from avro
2020-01-24 10:02:48 WARN  DatasetBoundSliceDataset:190 - Saving directly as Parquet from SQL. Options other than compression codec are ignored.
- transform variants to slice genomic dataset
- transform variants to coverage genomic dataset
- transform variants to feature genomic dataset
- transform variants to fragment genomic dataset
- transform variants to read genomic dataset
- transform variants to genotype genomic dataset
- transform variants to variant context genomic dataset
- filter RDD bound variants to filters passed
- filter dataset bound variants to filters passed
- filter RDD bound variants by quality
- filter dataset bound variants by quality
- filter RDD bound variants by read depth
- filter dataset bound variants by read depth
- filter RDD bound variants by reference read depth
- filter dataset bound variants by reference read depth
- filter RDD bound single nucleotide variants
- filter dataset bound single nucleotide variants
- filter RDD bound multiple nucleotide variants
- filter dataset bound multiple nucleotide variants
- filter RDD bound indel variants
- filter dataset bound indel variants
- filter RDD bound variants to single nucleotide variants
- filter dataset bound variants to single nucleotide variants
- filter RDD bound variants to multiple nucleotide variants
- filter dataset bound variants to multiple nucleotide variants
- filter RDD bound variants to indel variants
- filter dataset bound variants to indel variants
- transform dataset via java API
Run completed in 8 minutes, 31 seconds.
Total number of tests run: 1175
Suites: completed 68, aborted 0
Tests: succeeded 1175, failed 0, canceled 0, ignored 5, pending 0
All tests passed.
[INFO] 
[INFO] >>> scoverage-maven-plugin:1.1.1:report (default-cli) > [scoverage]test @ adam-core-spark2_2.11 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-core-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-core-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-core-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala added.
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/generated-sources/src/main/scala added.
[INFO] 
[INFO] --- exec-maven-plugin:1.5.0:java (generate-scala-products) @ adam-core-spark2_2.11 ---
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] 
[INFO] --- exec-maven-plugin:1.5.0:java (generate-scala-projection-fields) @ adam-core-spark2_2.11 ---
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-core-spark2_2.11 ---
[INFO] Modified 2 of 203 .scala files
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:pre-compile (default-cli) @ adam-core-spark2_2.11 ---
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-core-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-core-spark2_2.11 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/java:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/generated-sources/src/main/scala:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/generated-sources/annotations:-1: info: compiling
[INFO] Compiling 138 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/2.11.12/scoverage-classes at 1579888995438
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicDataset.scala:3099: warning: no valid targets for annotation on value uTag - it is discarded unused. You may specify targets with meta-annotations, e.g. @(transient @getter)
[WARNING]   @transient val uTag: TypeTag[U]
[WARNING]    ^
[INFO] [info] Cleaning datadir [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/scoverage-data]
[INFO] [info] Beginning coverage instrumentation
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[INFO] [info] Instrumentation completed [17311 statements]
[INFO] [info] Wrote instrumentation file [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/scoverage-data/scoverage.coverage.xml]
[INFO] [info] Will write measurement data to [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/scoverage-data]
[WARNING] warning: there were 89 deprecation warnings; re-run with -deprecation for details
[WARNING] warning: there were 5 feature warnings; re-run with -feature for details
[WARNING] three warnings found
[INFO] prepare-compile in 0 s
[INFO] compile in 38 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-core-spark2_2.11 ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 5 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/2.11.12/scoverage-classes
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:post-compile (default-cli) @ adam-core-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-core-spark2_2.11 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-core-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 152 resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-core-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-core-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-core-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-core-spark2_2.11 ---
Discovery starting.
Discovery completed in 2 seconds, 771 milliseconds.
Run starting. Expected test count is: 1175
RepairPartitionsSuite:
- don't pull from the first partition
- properly handle pulling from an empty iterator
- gets a single read from the partition if there are no other reads in the pair
- gets all the reads from a pair from the start of a partition
- properly handle dropping from an empty iterator
- don't drop from the first partition
- drop a single read from the partition if there are no other reads in the pair
- drops all the reads from a pair from the start of a partition
- only append to the first partition
- drop a single read from the partition and append read when in the middle
- drop reads from the start and don't append when in the last partition
- can't have more records than number of partitions
- unroll array for broadcast
2020-01-24 10:03:59 WARN  Utils:66 - Your hostname, amp-jenkins-staging-worker-02 resolves to a loopback address: 127.0.1.1; using 192.168.10.32 instead (on interface eno1)
2020-01-24 10:03:59 WARN  Utils:66 - Set SPARK_LOCAL_IP if you need to bind to another address
2020-01-24 10:03:59 WARN  NativeCodeLoader:62 - Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
- move pairs around an rdd
FlagStatSuite:
- Standard FlagStat test
ModPartitionerSuite:
- report number of partitions correctly
- partition a number that is lower than the number of partitions and positive
- partition a number that is greater than the number of partitions and positive
- partition a number that is lower than the number of partitions and negative
- partition a number that is greater than the number of partitions and negative
- fire an exception if input is not an integer
TwoBitFileSuite:
- correctly read sequence from .2bit file
- correctly return masked sequences from .2bit file
- correctly return Ns from .2bit file
- correctly calculates sequence dictionary
NonoverlappingRegionsSuite:
- alternating returns an alternating seq of items
- Single region returns itself
- Two adjacent regions will be merged
- Nonoverlapping regions will all be returned
- Many overlapping regions will all be merged
- ADAMRecords return proper references
ReferencePositionSuite:
- create reference position from mapped read
- create reference position from variant
- create reference position from genotype
- create reference position from variant starting at vcf 0
- create reference position from genotype starting at vcf 0
ConsensusGeneratorFromReadsSuite:
- checking search for consensus list for artificial reads
FragmentConverterSuite:
- build a fragment collector and convert to a read
- if a fragment isn't associated with a contig, don't get a fragment collector
- convert an rdd of discontinuous fragments, all from the same contig
- convert an rdd of contiguous fragments, all from the same contig
- convert an rdd of varied fragments from multiple contigs
FileMergerSuite:
- cannot write both empty gzip block and cram eof
- buffer size must be non-negative
RichAlignmentSuite:
- Unclipped Start
- Unclipped End
- tags contains optional fields
- read overlap unmapped read
- read overlap reference position
- read overlap same position different contig
SingleReadBucketSuite:
- convert unmapped pair to fragment
- convert proper pair to fragment
- convert read pair to fragment with first of pair chimeric read
RecalibrationTableSuite:
- look up quality scores in table
FlankSlicesSuite:
- don't put flanks on non-adjacent slices
- put flanks on adjacent slices
InterleavedFastqInputFormatSuite:
- interleaved FASTQ hadoop reader: interleaved_fastq_sample1.ifq->interleaved_fastq_sample1.ifq.output
- interleaved FASTQ hadoop reader: interleaved_fastq_sample2.ifq->interleaved_fastq_sample2.ifq.output
- interleaved FASTQ hadoop reader: interleaved_fastq_sample3.ifq->interleaved_fastq_sample3.ifq.output
- interleaved FASTQ hadoop reader: interleaved_fastq_sample4.ifq->interleaved_fastq_sample4.ifq.output
- interleaved FASTQ hadoop reader: interleaved_fastq_sample5.ifq->interleaved_fastq_sample5.ifq.output
TreeRegionJoinSuite:
- run a join between data on a single contig
ReferenceRegionSuite:
- cannot create an empty predicate
- parse empty string throws IllegalArgumentException
- parse contigName only string into reference regions
- parse to end strings into reference regions
- parse string into reference regions
- contains(: ReferenceRegion)
- contains(: ReferencePosition)
- merge
- overlaps and covers
- overlapsBy and coversBy
- distance(: ReferenceRegion)
- distance(: ReferencePosition)
- unstrandedDistance
- subtract fails on non-overlapping and non-covering regions
- subtract
- create region from unmapped read fails
- create region from read with null alignment positions fails
- create stranded region from unmapped read fails
- create stranded region from read with null alignment positions fails
- create stranded region from read with null alignment strand fails
- create stranded region from read on forward strand
- create stranded region from read on reverse strand
- create region from mapped read contains read start and end
- validate that adjacent regions can be merged
- validate that non-adjacent regions cannot be merged
- validate that nearby regions can be merged
- validate that non-nearby regions cannot be merged
- compute convex hull of two sets
- region name is sanitized when creating region from read
- intersection fails on non-overlapping regions
- intersection fails when minOverlap is not met
- compute intersection
- overlap tests for oriented reference region
- check the width of a reference region
- make a reference region for a variant or genotype
- make a reference region for a variant or genotype starting at VCF 0
- uniformly pad a reference region
- uniformly pad a reference region into negative coordinate space, ensure non negative start
- unevenly pad a reference region
- unevenly pad a reference region into negative coordinate space, ensure non negative start
- can build an open ended reference region
- can build an open ended reference region with strand
- can build a reference region with an open start position
- can build a reference region with an open start position with strand
- can build a reference region that covers the entirety of a contig
- can build a reference region that covers the entirety of a contig with strand
- convert a genotype and then get the reference region
- create region from feature with null alignment positions fails
- create stranded region from feature with null alignment positions fails
- create stranded region from feature with null alignment strand fails
- create stranded region from feature on forward strand
- create stranded region from feature on reverse strand
CoverageDatasetSuite:
- correctly saves coverage
- can read a bed file to coverage
- correctly filters coverage with predicate
- keeps sample metadata
- can read a bed file with multiple samples to coverage
- correctly flatmaps coverage without aggregated bins
- correctly flatmaps coverage with aggregated bins
- collapses coverage records in one partition
- approximately collapses coverage records in multiple partitions
2020-01-24 10:04:24 WARN  DatasetBoundSliceDataset:190 - Saving directly as Parquet from SQL. Options other than compression codec are ignored.
- transform coverage to slice genomic dataset
- transform coverage to feature genomic dataset
2020-01-24 10:04:26 WARN  Utils:66 - Truncated the string representation of a plan since it was too large. This behavior can be adjusted by setting 'spark.debug.maxToStringFields' in SparkEnv.conf.
- transform coverage to fragment genomic dataset
- transform coverage to read genomic dataset
- transform coverage to genotype genomic dataset
- transform coverage to variant genomic dataset
- transform coverage to variant context genomic dataset
- copy coverage rdd
- copy coverage dataset
- copy coverage rdd without sequence dictionary
- copy coverage dataset without sequence dictionary
- transform dataset via java API
RecalibratorSuite:
- don't replace quality if quality was null
- if no covariates, return alignment
- skip recalibration if base is below quality threshold
- recalibrate changed bases above quality threshold
SliceDatasetSuite:
- create a new slice genomic dataset
- create a new slice genomic dataset with sequence dictionary
- merge slices into a sequence genomic dataset
- save as parquet
- round trip as parquet
- save as fasta
- save as single file fasta
- convert slices to reads
- convert slices to sequences
GenotypeDatasetSuite:
- union two genotype genomic datasets together
- round trip to parquet
- round trip to partitioned parquet
- use broadcast join to pull down genotypes mapped to targets
- use right outer broadcast join to pull down genotypes mapped to targets
- use shuffle join to pull down genotypes mapped to targets
- use right outer shuffle join to pull down genotypes mapped to targets
- use left outer shuffle join to pull down genotypes mapped to targets
- use full outer shuffle join to pull down genotypes mapped to targets
- use shuffle join with group by to pull down genotypes mapped to targets
- use right outer shuffle join with group by to pull down genotypes mapped to targets
- convert back to variant contexts
- load parquet to sql, save, re-read from avro
2020-01-24 10:05:01 WARN  DatasetBoundSliceDataset:190 - Saving directly as Parquet from SQL. Options other than compression codec are ignored.
- transform genotypes to slice genomic dataset
- transform genotypes to coverage genomic dataset
- transform genotypes to feature genomic dataset
- transform genotypes to fragment genomic dataset
- transform genotypes to read genomic dataset
- transform genotypes to variant genomic dataset
- transform genotypes to variant context genomic dataset
- loading genotypes then converting to variants yields same output as loading variants
- filter RDD bound genotypes to genotype filters passed
- filter dataset bound genotypes to genotype filters passed
- filter RDD bound genotypes by genotype quality
- filter dataset bound genotypes by genotype quality
- filter RDD bound genotypes by read depth
- filter dataset bound genotypes by read depth
- filter RDD bound genotypes by alternate read depth
- filter dataset bound genotypes by alternate read depth
- filter RDD bound genotypes by reference read depth
- filter dataset bound genotypes by reference read depth
- filter RDD bound genotypes by sample
- filter dataset bound genotypes by sample
- filter RDD bound genotypes by samples
- filter dataset bound genotypes by samples
- filter RDD bound no call genotypes
- filter dataset no call genotypes
- round trip gVCF END attribute without nested variant annotations rdd bound
- round trip gVCF END attribute without nested variant annotations dataset bound
- round trip gVCF END attribute with nested variant annotations rdd bound
- round trip gVCF END attribute with nested variant annotations dataset bound
- transform dataset via java API
FragmentDatasetSuite:
- don't lose any reads when piping interleaved fastq to sam
- don't lose any reads when piping tab5 to sam
- don't lose any reads when piping tab6 to sam
- use broadcast join to pull down fragments mapped to targets
- use right outer broadcast join to pull down fragments mapped to targets
- use shuffle join to pull down fragments mapped to targets
- use right outer shuffle join to pull down fragments mapped to targets
- use left outer shuffle join to pull down fragments mapped to targets
- use full outer shuffle join to pull down fragments mapped to targets
- use shuffle join with group by to pull down fragments mapped to targets
- use right outer shuffle join with group by to pull down fragments mapped to targets
- bin quality scores in fragments
- union two genomic datasets of fragments together
- load parquet to sql, save, re-read from avro
- transform fragments to slice genomic dataset
- transform fragments to coverage genomic dataset
- transform fragments to feature genomic dataset
- transform fragments to read genomic dataset
- transform fragments to genotype genomic dataset
- transform fragments to variant genomic dataset
- transform fragments to variant context genomic dataset
- paired read names with index sequences in read names can group into fragments
- interleaved paired read names with index sequences in read names can group into fragments
- interleaved paired read names with index sequences in read names as fragments
- transform dataset via java API
- dataset and rdd conversion to alignments are equivalent
SingleFastqInputFormatSuite:
- FASTQ hadoop reader: fastq_sample1.fq->single_fastq_sample1.fq.output
- FASTQ hadoop reader: fastq_sample2.fq->single_fastq_sample2.fq.output
- FASTQ hadoop reader: fastq_sample3.fq->single_fastq_sample3.fq.output
- FASTQ hadoop reader: fastq_sample4.fq->single_fastq_sample4.fq.output
VariantContextDatasetSuite:
- load a gvcf with a missing info field set to .
- union two variant context genomic datasets together
- can write, then read in .vcf file
- can write as a single file via simple saveAsVcf method, then read in .vcf file
- can write as a single file via full saveAsVcf method, then read in .vcf file
- transform a vcf file with bad header
- read a vcf file with multi-allelic variants to split
- support VCFs with +Inf/-Inf float values
- support VCFs with `nan` instead of `NaN` float values
- don't lose any variants when piping as VCF
- pipe works with empty partitions
- don't lose any non-default VCF header lines or attributes when piping as VCF
- save a file sorted by contig index
- save a lexicographically sorted file
- save a multiallelic gvcf !!! IGNORED !!!
- test metadata
- save sharded bgzip vcf
- save bgzip vcf as single file
- can't save file with non-vcf extension
- transform variant contexts to slice genomic dataset
- transform variant contexts to coverage genomic dataset
- transform variant contexts to feature genomic dataset
- transform variant contexts to fragment genomic dataset
- transform variant contexts to read genomic dataset
- transform variant contexts to genotype genomic dataset
- transform variant contexts to variant genomic dataset
- save and reload from partitioned parquet
- transform dataset via java API
ConsensusSuite:
- test the insertion of a consensus insertion into a reference
- test the insertion of a consensus deletion into a reference
- inserting empty consensus returns the reference
SequenceDatasetSuite:
- create a new sequence genomic dataset
- create a new sequence genomic dataset with sequence dictionary
- save as parquet
- round trip as parquet
- save as fasta
- save as single file fasta
- convert sequences to reads
- convert sequences to slices
- slice sequences to a maximum length
- slice sequences shorter than maximum length
- filter sequences by overlapping region
- filter sequences failing to overlap region
- filter sequences by overlapping regions
- filter sequences failing to overlap regions
- slice sequences overlapping a smaller region
- slice sequences overlapping a larger region
- slice sequences failing to overlap a region
- slice sequences overlapping smaller regions
- slice sequences overlapping larger regions
- slice sequences failing to overlap regions
AttributeUtilsSuite:
- parseTags returns a reasonable set of tagStrings
- parseTags works with NumericSequence tagType
- empty string is parsed as zero tagStrings
- incorrectly formatted tag throws an exception
- string tag with a ':' in it is correctly parsed
- oq string tag with many ':' in it is correctly parsed
- oq string tag with a ',' in it is correctly parsed
- if a tag is an array but doesn't define it's format, throw
MarkDuplicatesSuite:
- single read
- reads at different positions
- reads at the same position
- reads at the same position with clipping
- reads on reverse strand
- unmapped reads
- read pairs
- read pairs with fragments
- quality scores
- read pairs that cross chromosomes
- single fragment
- fragments at different positions
- fragments at the same position
- fragments at the same position with clipping
- fragments on reverse strand
- unmapped fragments
- read pairs as fragments
- read pairs with fragments as fragments
- chimeric fragments
- inverse pairs
- supplemental reads
TranscriptEffectConverterSuite:
- parse empty transcript effect
- parse empty transcript effect strict validation stringency
- parse invalid transcript effect
- parse invalid transcript effect strict validation stringency
- parse transcript effect
- parse empty list VCF ANN attribute
- parse empty list VCF ANN attribute strict validation stringency
- parse empty string VCF ANN attribute
- parse empty string VCF ANN attribute strict validation stringency
- parse invalid VCF ANN attribute
- parse invalid VCF ANN attribute strict validation stringency
- parse VCF ANN attribute with one transcript effect
- parse VCF ANN attribute with multiple transcript effects
- convert to transcript effect from null VCF ANN attribute in variant context
- convert to transcript effect from empty list VCF ANN attribute in variant context
- convert to transcript effect from empty list VCF ANN attribute in variant context strict validation stringency
- convert to transcript effect from empty string VCF ANN attribute in variant context
- convert to transcript effect from empty string VCF ANN attribute in variant context strict validation stringency
- convert to transcript effect from invalid VCF ANN attribute in variant context
- convert to transcript effect from invalid VCF ANN attribute in variant context strict validation stringency
2020-01-24 10:06:31 WARN  TranscriptEffectConverter$:190 - Could not convert VCF INFO reserved key ANN value to TranscriptEffect, caught java.lang.NumberFormatException: For input string: "not a number".
- convert to transcript effect from VCF ANN attribute with invalid number in variant context lenient validation stringency
2020-01-24 10:06:31 WARN  TranscriptEffectConverter$:190 - Could not convert VCF INFO reserved key ANN value to TranscriptEffect, caught java.lang.NumberFormatException: For input string: "not a number".
- convert to transcript effect from VCF ANN attribute with invalid fraction in variant context lenient validation stringency
- convert to transcript effect from VCF ANN attribute with invalid number in variant context strict validation stringency
- convert to transcript effect from VCF ANN attribute with invalid fraction in variant context strict validation stringency
- convert to transcript effect from VCF ANN attribute in variant context different alt allele
- convert to transcript effect from VCF ANN attribute in variant context same alt allele
- convert to transcript effect from VCF ANN attribute in variant context multiple effects same alt allele
- convert transcript effect to VCF ANN attribute value
- convert transcript effect with null fields to VCF ANN attribute value
2020-01-24 10:06:31 WARN  TranscriptEffectConverter$:190 - Incorrect fractional value ?/2, missing numerator
- convert transcript effect with incorrect fractional value to VCF ANN attribute value
IndelRealignmentTargetSuite:
- checking simple realignment target
- creating simple target from read with deletion
- creating simple target from read with insertion
- joining simple realignment targets on same chr
- joining simple realignment targets on different chr throws exception
- creating targets from three intersecting reads, same indel
- creating targets from three intersecting reads, two different indel
- creating targets from two disjoint reads
- creating targets for artificial reads: one-by-one
- creating targets for artificial reads: all-at-once (merged)
- creating indel targets for mason reads
- additional indel targets taken from consensus generator
NormalizationUtilsSuite:
- cannot move an indel left if there are no bases to it's left
- move a simple indel to farthest position left until bases run out
- move a simple indel to farthest position left, past length of indel
- cannot move a left normalized indel in a short tandem repeat
- move an indel in a short tandem repeat
- move an indel in a short tandem repeat of more than 2 bases, where shift is not an integer multiple of repeated sequence length
- moving a simple read with single deletion that cannot shift
- shift an indel left by 0 in a cigar
- shift an indel left by 1 in a cigar
- do not left align a complex read which is already left aligned
ReadGroupDictionarySuite:
- simple conversion to and from sam read group
- sample name must be set
- simple equality checks
- get samples from read group dictionary
- empty read group is empty
- merging a dictionary with itself should work
- round trip a record with all attributes set
RightOuterTreeRegionJoinSuite:
- Ensure same reference regions get passed together
- Overlapping reference regions
InnerShuffleRegionJoinSuite:
- Overlapping reference regions
- Multiple reference regions do not throw exception
FeatureDatasetSuite:
- round trip GTF format
- save GTF as GFF3 format
- save GTF as BED format
- save GTF as IntervalList format
- save GTF as NarrowPeak format
- save GFF3 as GTF format
- save GFF3 as BED format
- save GFF3 as IntervalList format
- save GFF3 as NarrowPeak format
- round trip GFF3 format
- ignore FASTA sequence in GFF3 file
- save BED as GTF format
- save BED as GFF3 format
- save BED as IntervalList format
- save BED as NarrowPeak format
- round trip BED6 format
- keeps sample metadata
- round trip BED12 format
- save to UCSC BED format
- save IntervalList as GTF format
- save IntervalList as GFF3 format
- save IntervalList as BED format
- save IntervalList as IntervalList format
- save IntervalList as NarrowPeak format
- round trip IntervalList format
- save NarrowPeak as GTF format
- save NarrowPeak as GFF3 format
- save NarrowPeak as BED format
- save NarrowPeak as IntervalList format
- save NarrowPeak as NarrowPeak format
- round trip NarrowPeak format
- sort by reference
- sort by reference and feature fields
- sort gene features by reference and gene structure
- sort transcript features by reference and gene structure
- sort exon features by reference and gene structure
- sort intron features by reference and gene structure
- correctly flatmaps CoverageDataset from FeatureDataset
- use broadcast join to pull down features mapped to targets
- use right outer broadcast join to pull down features mapped to targets
- use shuffle join to pull down features mapped to targets
- use right outer shuffle join to pull down features mapped to targets
- use left outer shuffle join to pull down features mapped to targets
- use full outer shuffle join to pull down features mapped to targets
- use shuffle join with group by to pull down features mapped to targets
- use right outer shuffle join with group by to pull down features mapped to targets
- union two feature rdds together
- obtain sequence dictionary contig lengths from header in IntervalList format
- don't lose any features when piping as BED format
- don't lose any features when piping as GTF format
- don't lose any features when piping as GFF3 format
- don't lose any features when piping as NarrowPeak format
- load parquet to sql, save, re-read from avro
- load partitioned parquet to sql, save, re-read from avro
2020-01-24 10:07:08 WARN  DatasetBoundSliceDataset:190 - Saving directly as Parquet from SQL. Options other than compression codec are ignored.
- transform features to slice genomic dataset
- transform features to coverage genomic dataset
- transform features to fragment genomic dataset
- transform features to read genomic dataset
- transform features to genotype genomic dataset
- transform features to variant genomic dataset
- transform features to variant context genomic dataset
- filter RDD bound features by feature type
- filter dataset bound features by feature type
- filter RDD bound features by feature types
- filter dataset bound features by feature types
- filter RDD bound features by gene
- filter dataset bound features by gene
- filter RDD bound features by genes
- filter dataset bound features by genes
- filter RDD bound features by transcript
- filter dataset bound features by transcript
- filter RDD bound features by transcripts
- filter dataset bound features by transcripts
- filter RDD bound features by exon
- filter dataset bound features by exon
- filter RDD bound features by exons
- filter dataset bound features by exons
- filter RDD bound features by score
- filter dataset bound features by score
- filter RDD bound features by parent
- filter dataset bound features by parent
- filter RDD bound features by parents
- filter dataset bound features by parents
- filter RDD bound features by attribute
- filter dataset bound features by attribute
- transform dataset via java API
AlphabetSuite:
- test size of a case-sensitive alphabet
- test apply of a case-sensitive alphabet
- test reverse complement of a case-sensitive alphabet
- test exact reverse complement of a case-sensitive alphabet
- test size of a case-insensitive alphabet
- test apply of a case-insensitive alphabet
- test reverse complement of a case-insensitive alphabet
- test exact reverse complement of a case-insensitive alphabet
- DNA alphabet
- map unknown bases to N
SortedGenomicDatasetSuite:
- testing that partition and sort provide correct outputs
- testing copartition maintains or adds sort
- testing that we don't drop any data on the right side even though it doesn't map to a partition on the left
- testing that sorted shuffleRegionJoin matches unsorted
- testing that sorted fullOuterShuffleRegionJoin matches unsorted
- testing that sorted rightOuterShuffleRegionJoin matches unsorted
- testing that sorted leftOuterShuffleRegionJoin matches unsorted
- testing that we can persist the sorted knowledge
VariantContextConverterSuite:
- Convert htsjdk site-only SNV to ADAM
- Convert somatic htsjdk site-only SNV to ADAM
- Convert htsjdk site-only CNV to ADAM
- Convert htsjdk SNV w/ genotypes w/ phase information to ADAM
- Convert htsjdk SNV with different variant filters to ADAM
- Convert htsjdk SNV with different genotype filters to ADAM
- Convert ADAM site-only SNV to htsjdk
- Convert ADAM SNV w/ genotypes to htsjdk
- Convert ADAM SNV w/ genotypes but bad SB to htsjdk with strict validation
2020-01-24 10:07:27 WARN  VariantContextConverter:2300 - Applying annotation extraction function <function2> to {"variant": {"referenceName": "1", "start": 0, "end": 1, "names": [], "splitFromMultiAllelic": false, "referenceAllele": "A", "alternateAllele": "T", "quality": null, "filtersApplied": null, "filtersPassed": null, "filtersFailed": [], "annotation": null}, "referenceName": null, "start": null, "end": null, "variantCallingAnnotations": {"filtersApplied": null, "filtersPassed": null, "filtersFailed": [], "downsampled": null, "baseQRankSum": null, "fisherStrandBiasPValue": 3.0, "rmsMapQ": 0.0, "mapq0Reads": 5, "mqRankSum": null, "readPositionRankSum": null, "genotypePriors": [], "genotypePosteriors": [], "vqslod": null, "culprit": null, "attributes": {}}, "sampleId": "NA12878", "sampleDescription": null, "processingDescription": null, "alleles": ["REF", "ALT"], "expectedAlleleDosage": null, "referenceReadDepth": null, "alternateReadDepth": null, "readDepth": null, "minReadDepth": null, "genotypeQuality": null, "genotypeLikelihoods": [], "nonReferenceLikelihoods": [], "strandBiasComponents": [0, 2], "splitFromMultiAllelic": false, "phased": false, "phaseSetId": null, "phaseQuality": null} failed with java.lang.IllegalArgumentException: requirement failed: Illegal strand bias components length. Must be empty or 4. In:
{"variant": {"referenceName": "1", "start": 0, "end": 1, "names": [], "splitFromMultiAllelic": false, "referenceAllele": "A", "alternateAllele": "T", "quality": null, "filtersApplied": null, "filtersPassed": null, "filtersFailed": [], "annotation": null}, "referenceName": null, "start": null, "end": null, "variantCallingAnnotations": {"filtersApplied": null, "filtersPassed": null, "filtersFailed": [], "downsampled": null, "baseQRankSum": null, "fisherStrandBiasPValue": 3.0, "rmsMapQ": 0.0, "mapq0Reads": 5, "mqRankSum": null, "readPositionRankSum": null, "genotypePriors": [], "genotypePosteriors": [], "vqslod": null, "culprit": null, "attributes": {}}, "sampleId": "NA12878", "sampleDescription": null, "processingDescription": null, "alleles": ["REF", "ALT"], "expectedAlleleDosage": null, "referenceReadDepth": null, "alternateReadDepth": null, "readDepth": null, "minReadDepth": null, "genotypeQuality": null, "genotypeLikelihoods": [], "nonReferenceLikelihoods": [], "strandBiasComponents": [0, 2], "splitFromMultiAllelic": false, "phased": false, "phaseSetId": null, "phaseQuality": null}.
- Convert ADAM SNV w/ genotypes but bad SB to htsjdk with lenient validation
- Convert htsjdk multi-allelic sites-only SNVs to ADAM
- Convert htsjdk multi-allelic SNVs to ADAM and back to htsjdk
- Convert gVCF reference records to ADAM
- Convert htsjdk variant context with no IDs to ADAM
- Convert htsjdk variant context with one ID to ADAM
- Convert htsjdk variant context with multiple IDs to ADAM
- Convert ADAM variant context with no names to htsjdk
- Convert ADAM variant context with one name to htsjdk
- Convert ADAM variant context with multiple names to htsjdk
- Convert ADAM variant context with null filters applied to htsjdk
- Convert ADAM variant context with no filters applied to htsjdk
- Convert ADAM variant context with passing filters to htsjdk
- Convert ADAM variant context with failing filters to htsjdk
- no phasing set going htsjdk->adam
- phased but no phase set info going htsjdk->adam
- set phase set and extract going htsjdk->adam
- no allelic depth going htsjdk->adam
- set allelic depth going htsjdk->adam
- no gt read depth going htsjdk->adam
- extract gt read depth going htsjdk->adam
- no min gt read depth going htsjdk->adam
- extract min gt read depth going htsjdk->adam
- no genotype quality going htsjdk->adam
- extract genotype quality going htsjdk->adam
- no phred likelihood going htsjdk->adam
- extract phred likelihoods going htsjdk->adam
- no strand bias info going htsjdk->adam
- extract strand bias info going htsjdk->adam
- no filters going htsjdk->adam
- filters passed going htsjdk->adam
- extract single filter going htsjdk->adam
- extract multiple filters going htsjdk->adam
- no fisher strand bias going htsjdk->adam
- extract fisher strand bias going htsjdk->adam
- no rms mapping quality going htsjdk->adam
- extract rms mapping quality going htsjdk->adam
- no mq0 going htsjdk->adam
- extract mq0 going htsjdk->adam
- no gt read depth going adam->htsjdk
- extract gt read depth going adam->htsjdk
- throw iae if missing one component of gt read depth going adam->htsjdk
- no depth going adam->htsjdk
- extract depth going adam->htsjdk
- no min depth going adam->htsjdk
- extract min depth going adam->htsjdk
- no quality going adam->htsjdk
- extract quality going adam->htsjdk
- no genotype likelihoods going adam->htsjdk
- extract genotype likelihoods going adam->htsjdk
- no strand bias going adam->htsjdk
- malformed strand bias going adam->htsjdk
- extract strand bias going adam->htsjdk
- no phasing info going adam->htsjdk
- unphased going adam->htsjdk
- phased but no ps/pq going adam->htsjdk
- phased but no pq going adam->htsjdk
- phased but no ps going adam->htsjdk
- phased going adam->htsjdk
- no filter info going adam->htsjdk
- if filters applied, must set passed/failed going adam->htsjdk
- filters passed going adam->htsjdk
- if filters failed, must set filters failed going adam->htsjdk
- single filter failed going adam->htsjdk
- multiple filters failed going adam->htsjdk
- no fisher strand bias going adam->htsjdk
- extract fisher strand bias going adam->htsjdk
- no rms mapping quality going adam->htsjdk
- extract rms mapping quality going adam->htsjdk
- no mapping quality 0 reads going adam->htsjdk
- extract mapping quality 0 reads going adam->htsjdk
- no names set going htsjdk->adam
- single name set going htsjdk->adam
- multiple names set going htsjdk->adam
- no quality going htsjdk->adam
- quality set going htsjdk->adam
- no filters applied going htsjdk->adam
- filters applied and passed going htsjdk->adam
- single filter applied and failed going htsjdk->adam
- multiple filters applied and failed going htsjdk->adam
- no names set adam->htsjdk
- set a single name adam->htsjdk
- set multiple names adam->htsjdk
- no qual set adam->htsjdk
- qual is set adam->htsjdk
- no filters applied adam->htsjdk
- null filters applied adam->htsjdk
- filters passed adam->htsjdk
- if filter failed, must have filters adam->htsjdk
- single filter failed adam->htsjdk
- multiple filters failed adam->htsjdk
- no ancestral allele set going htsjdk->adam
- ancestral allele set going htsjdk->adam
- no dbsnp membership set going htsjdk->adam
- dbsnp membership set going htsjdk->adam
- no hapmap2 membership set going htsjdk->adam
- hapmap2 membership set going htsjdk->adam
- no hapmap3 membership set going htsjdk->adam
- hapmap3 membership set going htsjdk->adam
- no validated set going htsjdk->adam
- validated set going htsjdk->adam
- no 1000G membership set going htsjdk->adam
- 1000G membership set going htsjdk->adam
- not somatic going htsjdk->adam
- somatic going htsjdk->adam
- no allele count going htsjdk->adam
- single allele count going htsjdk->adam
- multiple allele counts going htsjdk->adam
- no allele frequency going htsjdk->adam
- single allele frequency going htsjdk->adam
- single allele frequency is +Inf going htsjdk->adam
- single allele frequency is -Inf going htsjdk->adam
- multiple allele frequencies going htsjdk->adam
- no CIGAR going htsjdk->adam
- single CIGAR going htsjdk->adam
- multiple CIGARs going htsjdk->adam
- no read depth going htsjdk->adam
- single read depth going htsjdk->adam
- multiple read depths going htsjdk->adam
- no forward read depth going htsjdk->adam
- single forward read depth going htsjdk->adam
- multiple forward read depths going htsjdk->adam
- no reverse read depth going htsjdk->adam
- single reverse read depth going htsjdk->adam
- multiple reverse read depths going htsjdk->adam
- no ancestral allele set adam->htsjdk
- ancestral allele set adam->htsjdk
- no dbsnp membership set adam->htsjdk
- dbsnp membership set adam->htsjdk
- no hapmap2 membership set adam->htsjdk
- hapmap2 membership set adam->htsjdk
- no hapmap3 membership set adam->htsjdk
- hapmap3 membership set adam->htsjdk
- no validated set adam->htsjdk
- validated set adam->htsjdk
- no 1000G membership set adam->htsjdk
- 1000G membership set adam->htsjdk
- no allele count set adam->htsjdk
- allele count set adam->htsjdk
- no allele frequency set adam->htsjdk
- allele frequency set adam->htsjdk
- no cigar set adam->htsjdk
- cigar set adam->htsjdk
- no read depth set adam->htsjdk
- read depth set adam->htsjdk
- read depth without reference read depth
- reference read depth without read depth
- no forward read depth set adam->htsjdk
- forward read depth set adam->htsjdk
- reference forward read depth without forward read depth
- forward read depth without reference forward read depth
- no reverse read depth set adam->htsjdk
- reverse read depth set adam->htsjdk
- reference reverse read depth without reverse read depth
- reverse read depth without reference reverse read depth
- VCF INFO attribute Number=0 Type=Flag adam->htsjdk
- VCF INFO attribute Number=4 Type=Flag adam->htsjdk unsupported, strict !!! IGNORED !!!
- VCF INFO attribute Number=1 Type=Integer adam->htsjdk
- VCF INFO attribute Number=4 Type=Integer adam->htsjdk
- VCF INFO attribute Number=A Type=Integer adam->htsjdk
- VCF INFO attribute Number=R Type=Integer adam->htsjdk
- VCF INFO attribute Number=R Type=String adam->htsjdk
- VCF INFO attribute Number=G Type=String adam->htsjdk not supported
- VCF INFO attribute Number=0 Type=Flag htsjdk->adam
- VCF INFO attribute Number=1 Type=Integer htsjdk->adam
- VCF INFO attribute Number=4 Type=Integer htsjdk->adam
- VCF INFO attribute Number=4 Type=Float htsjdk->adam
- VCF INFO attribute Number=A Type=Integer htsjdk->adam
- VCF INFO attribute Number=R Type=Integer htsjdk->adam
- VCF INFO attribute Number=R Type=String htsjdk->adam
- VCF INFO attribute Number=G Type=String htsjdk->adam not supported
- VCF FORMAT attribute Number=0 Type=Flag adam->htsjdk not supported
- VCF FORMAT attribute Number=1 Type=Integer adam->htsjdk
- VCF FORMAT attribute Number=4 Type=Integer adam->htsjdk
- VCF FORMAT attribute Number=A Type=Integer adam->htsjdk
- VCF FORMAT attribute Number=R Type=Integer adam->htsjdk
- VCF FORMAT attribute Number=R Type=String adam->htsjdk
- VCF FORMAT attribute Number=0 Type=Flag htsjdk->adam is not supported
- VCF FORMAT attribute Number=1 Type=Integer htsjdk->adam
- VCF FORMAT attribute Number=4 Type=Integer htsjdk->adam
- VCF FORMAT attribute Number=4 Type=Float htsjdk->adam
- VCF FORMAT attribute Number=A Type=Integer htsjdk->adam
- VCF FORMAT attribute Number=R Type=Integer htsjdk->adam
- VCF FORMAT attribute Number=R Type=String htsjdk->adam
- VCF FORMAT attribute Number=G Type=String htsjdk->adam
- respect end position for symbolic alts
FastqRecordConverterSuite:
- test read name suffix and index of pair must match
- test parseReadInFastq, read suffix removal
- test parseReadInFastq, read metadata removal
- test parseReadInFastq, read quality shorter than read length, padded with B
- test parseReadInFastq, read quality longer than read length 
- test parseReadInFastq, no read quality
- testing FastqRecordConverter.convertPair with valid input
- testing FastqRecordConverter.convertPair with 7-line invalid input
- testing FastqRecordConverter.convertPair with invalid input: first read length and qual don't match
- testing FastqRecordConverter.convertPair with invalid input: second read length and qual don't match
- testing FastqRecordConverter.convertFragment with valid input
- testing FastqRecordConverter.convertFragment with another valid input having /1, /2 suffixes
- testing FastqRecordConverter.convertFragment with invalid input: different read names
- testing FastqRecordConverter.convertRead with valid input
- testing FastqRecordConverter.convertRead with valid input: setFirstOfPair set to true
- testing FastqRecordConverter.convertRead with valid input: setSecondOfPair set to true
- testing FastqRecordConverter.convertRead with valid input: setFirstOfPair and setSecondOfPair both true
- testing FastqRecordConverter.convertRead with valid input, no qual, strict
- testing FastqRecordConverter.convertRead with valid input, no qual, not strict
AttributeSuite:
- test SAMTagAndValue parsing
- Attributes can be correctly re-encoded as text SAM tags
GFF3HeaderWriterSuite:
- write gff3 header pragma
BinQualitiesSuite:
- make a quality score bin
- can't have a quality score bin with negative score
- can't have a quality score bin with high score below low
- can't have a quality score bin with high score above 255
- can't have a quality score bin with score outside
- make a quality score bin from a string
- quality score bin must have exactly 3 elements
- quality score bin must be integers
- must define at least one bin
- build multiple bins
- rewrite quality scores for a read
- rewriting quality scores fails if bins overlap
- rewriting quality scores fails if base is out of bounds
- skip read if qualities are null
- rewrite a read
IndexedFastaFileSuite:
- correctly generates sequence dictionary from .dict file
- correctly gets sequence
- fails when fai index is not provided
2020-01-24 10:07:28 WARN  IndexedFastaFile:190 - Caught exception java.lang.NullPointerException when loading FASTA sequence dictionary. Using empty dictionary instead.
- passes when dict is not provided and ValidationStringency = LENIENT
SAMRecordConverterSuite:
- testing the fields in an Alignment obtained from a mapped samRecord conversion
- testing the fields in an Alignment obtained from an unmapped samRecord conversion
- '*' quality gets nulled out
- don't keep denormalized fields
ADAMContextSuite:
- ctr is accessible
- load from an empty directory
- sc.loadParquet should not fail on unmapped reads
- sc.loadParquet should not load a file without a type specified
- can read a small .SAM file
- can read a small .SAM file with a bad header with lenient validation
- loading a sam file with a bad header and strict stringency should fail
- can read a small .CRAM file
- can read a small .SAM with all attribute tag types
- can filter a .SAM file based on quality
- Can convert to phred
- Can convert from phred
- Can read a .gtf file
- Can read a .bed file
- Can read a BED 12 file
- Can read a .narrowPeak file
- Can read a .interval_list file
2020-01-24 10:07:32 WARN  VariantContextConverter:1662 - Saw invalid info field java.lang.IllegalArgumentException: Multivalued flags are not supported for INFO lines: INFO=<ID=ABADFLAG,Number=.,Type=Flag,Description="A no good, very bad flag.">. Ignoring...
2020-01-24 10:07:32 WARN  VariantContextConverter:2169 - Generating field extractor from header line INFO=<ID=ABADFLAG,Number=.,Type=Flag,Description="A no good, very bad flag."> failed: java.lang.IllegalArgumentException: Multivalue flags are not supported for INFO lines: INFO=<ID=ABADFLAG,Number=.,Type=Flag,Description="A no good, very bad flag.">
- can read a small .vcf file with a validation issue
- can read a small .vcf file
2020-01-24 10:07:33 WARN  VCFInputFormat:218 - file:/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/2.11.12/test-classes/test.vcf.gz is not splittable, consider using block-compressed gzip (BGZF)
- can read a gzipped .vcf file
- can read a vcf file with an empty alt
- can read a BGZF gzipped .vcf file with .gz file extension
- can read a BGZF gzipped .vcf file with .bgz file extension
- can read a vcf file with a projection
- can read an uncompressed BCFv2.2 file !!! IGNORED !!!
- can read a BGZF compressed BCFv2.2 file !!! IGNORED !!!
- loadIndexedVcf with 1 ReferenceRegion
- loadIndexedVcf with multiple ReferenceRegions
- load block compressed interleaved fastq
- import records from interleaved FASTQ: 1
- import records from interleaved FASTQ: 2
- import records from interleaved FASTQ: 3
- import records from interleaved FASTQ: 4
- import block compressed single fastq
- import records from single ended FASTQ: 1
- import records from single ended FASTQ: 2
- import records from single ended FASTQ: 3
- import records from single ended FASTQ: 4
- filter on load using the filter2 API
- saveAsParquet with file path
- saveAsParquet with file path, block size, page size
- saveAsParquet with save args
- read a HLA fasta from GRCh38
- read a gzipped fasta file
- read a fasta file with comments, gaps, and translation stops
- loadIndexedBam with 1 ReferenceRegion
- loadIndexedBam with multiple ReferenceRegions
- loadIndexedBam with multiple ReferenceRegions and indexed bams
- loadIndexedBam with multiple ReferenceRegions and a directory of indexed bams
- loadIndexedBam should throw exception without an index file
- loadIndexedBam should work with indexed file with index naming format <filename>.bai
- loadIndexedBam glob should throw exception without an index file
- loadBam with a glob
- loadBam with a directory
- load vcf with a glob
- load vcf from a directory
- load gvcf which contains a multi-allelic row from a directory
- load and save gvcf which contains rows without likelihoods
- parse annotations for multi-allelic rows
- load parquet with globs
- bad glob should fail
- empty directory should fail
- can read a SnpEff-annotated .vcf file
- loadAlignments should not fail on single-end and paired-end fastq reads
- load queryname sorted sam as fragments
- load query grouped sam as fragments
- load paired fastq
- load paired fastq without cache
- load paired fastq as fragments
- load paired fastq as fragments without cache
- load HTSJDK sequence dictionary
- load Bedtools .genome file as sequence dictionary
- load Bedtools .genome.txt file as sequence dictionary
- load UCSC Genome Browser chromInfo.txt file as sequence dictionary
- load unrecognized file extension as sequence dictionary fails
- load BED features with Bedtools .genome file as sequence dictionary
- load BED features with Bedtools .genome file as sequence dictionary, no matching features
- convert program record
- load program record from sam file
- load alignments from data frame
- load features from data frame
- load fragments from data frame
- load genotypes from data frame with default header lines
- load genotypes from data frame with empty header lines
- load reads from data frame
- load sequences from data frame
- load slices from data frame
- load variant contexts from data frame with default header lines
- load variant contexts from data frame with empty header lines
- load variants from data frame with default header lines
- load variants from data frame with empty header lines
- load alignments with metadata from data frame
- load features with metadata from data frame
- load fragments with metadata from data frame
- load genotypes with metadata from data frame
- load variant contexts with metadata from data frame
- load variants with metadata from data frame
- read a fasta file with short sequences as sequences
- read a fasta file with long sequences as sequences
- read a fasta file with short sequences as slices
- read a fasta file with long sequences as slices
CycleCovariateSuite:
- compute covariates for an unpaired read on the negative strand
- compute covariates for a first-of-pair read on the negative strand
- compute covariates for a second-of-pair read on the negative strand
- compute covariates for an unpaired read on the positive strand
- compute covariates for a first-of-pair read on the positive strand
- compute covariates for a second-of-pair read on the positive strand
AlignmentConverterSuite:
- testing the fields in a converted ADAM Read
- converting a read with null quality is OK
- convert a read to fastq
- reverse complement reads when converting to fastq
- converting to fastq with unmapped reads where  read reverse complemented flag (Ox10) was NOT set
- converting to fastq with unmapped reads where reverse complemented flag (0x10) was set
- converting a fragment with no alignments should yield unaligned reads
- converting a fragment with alignments should restore the alignments
- read negative strand is propagated even when not mapped
ConsensusGeneratorFromKnownsSuite:
- no consensuses for empty target
- no consensuses for reads that don't overlap a target
- return a consensus for read overlapping a single target
RichCigarSuite:
- moving 2 bp from a deletion to a match operator
- moving 2 bp from a insertion to a match operator
- moving 1 base in a two element cigar
- move to start of read
- process right clipped cigar
- process left clipped cigar
- process cigar clipped on both ends
MDTaggingSuite:
- test adding MDTags over boundary
- test adding MDTags; reads span full contig
- test adding MDTags; reads start inside first fragment
- test adding MDTags; reads end inside last fragment
- test adding MDTags; reads start inside first fragment and end inside last fragment
- test adding MDTags; reads start and end in middle fragements
2020-01-24 10:08:23 WARN  BlockManager:66 - Putting block rdd_5_3 failed due to exception java.lang.Exception: Contig chr2 not found in reference map with keys: chr1.
2020-01-24 10:08:23 WARN  BlockManager:66 - Block rdd_5_3 could not be removed as it was not found on disk or in memory
2020-01-24 10:08:23 ERROR Executor:91 - Exception in task 3.0 in stage 2.0 (TID 11)
java.lang.Exception: Contig chr2 not found in reference map with keys: chr1
	at org.bdgenomics.adam.util.ReferenceContigMap$$anonfun$extract$1.apply(ReferenceContigMap.scala:63)
	at org.bdgenomics.adam.util.ReferenceContigMap$$anonfun$extract$1.apply(ReferenceContigMap.scala:63)
	at scala.collection.MapLike$class.getOrElse(MapLike.scala:128)
	at scala.collection.AbstractMap.getOrElse(Map.scala:59)
	at org.bdgenomics.adam.util.ReferenceContigMap.extract(ReferenceContigMap.scala:61)
	at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1$$anonfun$apply$2.apply(MDTagging.scala:76)
	at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1$$anonfun$apply$2.apply(MDTagging.scala:71)
	at scala.Option$WithFilter.map(Option.scala:207)
	at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1.apply(MDTagging.scala:71)
	at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1.apply(MDTagging.scala:69)
	at scala.collection.Iterator$$anon$11.next(Iterator.scala:410)
	at org.apache.spark.storage.memory.MemoryStore.putIterator(MemoryStore.scala:222)
	at org.apache.spark.storage.memory.MemoryStore.putIteratorAsValues(MemoryStore.scala:299)
	at org.apache.spark.storage.BlockManager$$anonfun$doPutIterator$1.apply(BlockManager.scala:1165)
	at org.apache.spark.storage.BlockManager$$anonfun$doPutIterator$1.apply(BlockManager.scala:1156)
	at org.apache.spark.storage.BlockManager.doPut(BlockManager.scala:1091)
	at org.apache.spark.storage.BlockManager.doPutIterator(BlockManager.scala:1156)
	at org.apache.spark.storage.BlockManager.getOrElseUpdate(BlockManager.scala:882)
	at org.apache.spark.rdd.RDD.getOrCompute(RDD.scala:335)
	at org.apache.spark.rdd.RDD.iterator(RDD.scala:286)
	at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90)
	at org.apache.spark.scheduler.Task.run(Task.scala:123)
	at org.apache.spark.executor.Executor$TaskRunner$$anonfun$10.apply(Executor.scala:408)
	at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1360)
	at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:414)
	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
	at java.lang.Thread.run(Thread.java:748)
2020-01-24 10:08:24 WARN  TaskSetManager:66 - Lost task 3.0 in stage 2.0 (TID 11, localhost, executor driver): java.lang.Exception: Contig chr2 not found in reference map with keys: chr1
	at org.bdgenomics.adam.util.ReferenceContigMap$$anonfun$extract$1.apply(ReferenceContigMap.scala:63)
	at org.bdgenomics.adam.util.ReferenceContigMap$$anonfun$extract$1.apply(ReferenceContigMap.scala:63)
	at scala.collection.MapLike$class.getOrElse(MapLike.scala:128)
	at scala.collection.AbstractMap.getOrElse(Map.scala:59)
	at org.bdgenomics.adam.util.ReferenceContigMap.extract(ReferenceContigMap.scala:61)
	at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1$$anonfun$apply$2.apply(MDTagging.scala:76)
	at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1$$anonfun$apply$2.apply(MDTagging.scala:71)
	at scala.Option$WithFilter.map(Option.scala:207)
	at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1.apply(MDTagging.scala:71)
	at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1.apply(MDTagging.scala:69)
	at scala.collection.Iterator$$anon$11.next(Iterator.scala:410)
	at org.apache.spark.storage.memory.MemoryStore.putIterator(MemoryStore.scala:222)
	at org.apache.spark.storage.memory.MemoryStore.putIteratorAsValues(MemoryStore.scala:299)
	at org.apache.spark.storage.BlockManager$$anonfun$doPutIterator$1.apply(BlockManager.scala:1165)
	at org.apache.spark.storage.BlockManager$$anonfun$doPutIterator$1.apply(BlockManager.scala:1156)
	at org.apache.spark.storage.BlockManager.doPut(BlockManager.scala:1091)
	at org.apache.spark.storage.BlockManager.doPutIterator(BlockManager.scala:1156)
	at org.apache.spark.storage.BlockManager.getOrElseUpdate(BlockManager.scala:882)
	at org.apache.spark.rdd.RDD.getOrCompute(RDD.scala:335)
	at org.apache.spark.rdd.RDD.iterator(RDD.scala:286)
	at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90)
	at org.apache.spark.scheduler.Task.run(Task.scala:123)
	at org.apache.spark.executor.Executor$TaskRunner$$anonfun$10.apply(Executor.scala:408)
	at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1360)
	at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:414)
	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
	at java.lang.Thread.run(Thread.java:748)

2020-01-24 10:08:24 ERROR TaskSetManager:70 - Task 3 in stage 2.0 failed 1 times; aborting job
- try realigning a read on a missing contig, stringency == STRICT
2020-01-24 10:08:24 WARN  MDTagging:190 - Caught exception when processing read chr2: java.lang.Exception: Contig chr2 not found in reference map with keys: chr1
- try realigning a read on a missing contig, stringency == LENIENT
FileExtensionsSuite:
- ends in gzip extension
- is a vcf extension
PhredUtilsSuite:
- convert low phred score to log and back
- convert high phred score to log and back
- convert overflowing phred score to log and back and clip
- convert negative zero log probability to phred and clip
- round trip log probabilities
ReadDatasetSuite:
- create a new read genomic dataset
- create a new read genomic dataset with sequence dictionary
- save as parquet
- round trip as parquet
- save as fastq
- save as single file fastq
- filter read genomic dataset by reference region
- broadcast region join reads and features
- shuffle region join reads and features
- convert reads to alignments
- convert reads to sequences
- convert reads to slices
AlignmentDatasetSuite:
- sorting reads
- unmapped reads go at the end when sorting
- coverage does not fail on unmapped reads
- computes coverage
- computes coverage with multiple samples
- merges adjacent records with equal coverage values
- sorting reads by reference index
- round trip from ADAM to SAM and back to ADAM produces equivalent Read values
- round trip with single CRAM file produces equivalent Read values
- round trip with sharded CRAM file produces equivalent Read values
- SAM conversion sets read mapped flag properly
- load long FASTQ reads
- load FASTQ with no bases
- convert malformed FASTQ (no quality scores) => SAM => well-formed FASTQ => SAM
- round trip from ADAM to FASTQ and back to ADAM produces equivalent Read values
- round trip from ADAM to paired-FASTQ and back to ADAM produces equivalent Read values
- writing a small file with tags should produce the expected result
- writing a small sorted file as SAM should produce the expected result
- writing unordered sam from unordered sam
- writing ordered sam from unordered sam
- write single sam file back
- write single bam file back
- saveAsParquet with save args, sequence dictionary, and read group dictionary
- load parquet to sql, save, re-read from avro
- load from sam, save as partitioned parquet, and re-read from partitioned parquet
- save as SAM format
- save as sorted SAM format
- save as BAM format
- save as sorted BAM format
- save as FASTQ format
- save as ADAM parquet format
- saveAsSam SAM format
- saveAsSam SAM format single file
- saveAsSam sorted SAM format single file
- saveAsSam BAM format
- saveAsSam BAM format single file
- saveAsSam sorted BAM format single file
- saveAsFastq
- saveAsFastq as single file
- saveAsFastq with original base qualities
- saveAsFastq sorted by read name
- saveAsFastq sorted by read name with original base qualities
2020-01-24 10:08:56 WARN  RDDBoundAlignmentDataset:190 - Found 20 read names that don't occur exactly twice:
	1x:	20

Samples:
	simread:1:237728409:true
	simread:1:195211965:false
	simread:1:163841413:false
	simread:1:231911906:false
	simread:1:26472783:false
	simread:1:165341382:true
	simread:1:240344442:true
	simread:1:50683371:false
	simread:1:240997787:true
	simread:1:14397233:false
	simread:1:207027738:true
	simread:1:20101800:true
	simread:1:101556378:false
	simread:1:37577445:false
	simread:1:189606653:true
	simread:1:5469106:true
	simread:1:186794283:true
	simread:1:89554252:false
	simread:1:153978724:false
	simread:1:169801933:true
- saveAsFastq paired FASTQ
2020-01-24 10:08:57 WARN  RDDBoundAlignmentDataset:190 - Found 20 read names that don't occur exactly twice:
	1x:	20

Samples:
	simread:1:237728409:true
	simread:1:195211965:false
	simread:1:163841413:false
	simread:1:231911906:false
	simread:1:26472783:false
	simread:1:165341382:true
	simread:1:240344442:true
	simread:1:50683371:false
	simread:1:240997787:true
	simread:1:14397233:false
	simread:1:207027738:true
	simread:1:20101800:true
	simread:1:101556378:false
	simread:1:37577445:false
	simread:1:189606653:true
	simread:1:5469106:true
	simread:1:186794283:true
	simread:1:89554252:false
	simread:1:153978724:false
	simread:1:169801933:true
- saveAsPairedFastq
2020-01-24 10:08:58 WARN  RDDBoundAlignmentDataset:190 - Found 20 read names that don't occur exactly twice:
	1x:	20

Samples:
	simread:1:237728409:true
	simread:1:195211965:false
	simread:1:163841413:false
	simread:1:231911906:false
	simread:1:26472783:false
	simread:1:165341382:true
	simread:1:240344442:true
	simread:1:50683371:false
	simread:1:240997787:true
	simread:1:14397233:false
	simread:1:207027738:true
	simread:1:20101800:true
	simread:1:101556378:false
	simread:1:37577445:false
	simread:1:189606653:true
	simread:1:5469106:true
	simread:1:186794283:true
	simread:1:89554252:false
	simread:1:153978724:false
	simread:1:169801933:true
- saveAsPairedFastq as single files
- don't lose any reads when piping as SAM
2020-01-24 10:09:10 WARN  OutFormatterRunner:190 - Piped command List(sleep, 10) timed out after 5 seconds.
2020-01-24 10:09:10 WARN  OutFormatterRunner:190 - Piped command List(sleep, 10) timed out after 5 seconds.
- lose all records when a command times out
- lose no records without a timeout
2020-01-24 10:09:31 WARN  OutFormatterRunner:190 - Piped command List(python, /tmp/adamTestMvnM5Ay7Lc/spark-dc88bb1d-8639-4362-b118-e6249b4bc82d/userFiles-c4e52ef9-c094-4c09-a5eb-97127d54dfd2/timeout.py) timed out after 5 seconds.
2020-01-24 10:09:31 WARN  OutFormatterRunner:190 - Piped command List(python, /tmp/adamTestMvnM5Ay7Lc/spark-dc88bb1d-8639-4362-b118-e6249b4bc82d/userFiles-c4e52ef9-c094-4c09-a5eb-97127d54dfd2/timeout.py) timed out after 5 seconds.
- lose some records when a command times out
- don't lose any reads when piping as SAM using java pipe
- don't lose any reads when piping as BAM
- don't lose any reads when piping fastq to sam
- can properly set environment variables inside of a pipe
- read vcf from alignment pipe !!! IGNORED !!!
- use broadcast join to pull down reads mapped to targets
- use broadcast join against to pull down reads mapped to targets
- use right outer broadcast join to pull down reads mapped to targets
- use right outer broadcast join against to pull down reads mapped to targets
- use shuffle join with feature spanning partitions
- use shuffle join to pull down reads mapped to targets
- use shuffle join with flankSize to pull down reads mapped close to targets
- use right outer shuffle join to pull down reads mapped to targets
- use left outer shuffle join to pull down reads mapped to targets
- use full outer shuffle join to pull down reads mapped to targets
- use shuffle join with group by to pull down reads mapped to targets
- use right outer shuffle join with group by to pull down reads mapped to targets
- cannot provide empty quality score bins
- cannot provide bins with a gap
- cannot provide overlapping bins
- binning quality scores in reads succeeds even if reads have no quality scores
- bin quality scores in reads
- union two read files together
- test k-mer counter
- test dataset based k-mer counter
- transform reads to slice genomic dataset
- transform reads to coverage genomic dataset
- transform reads to feature genomic dataset
- transform reads to fragment genomic dataset
- transform reads to genotype genomic dataset
loading /tmp/adamTestMvnM5Ay7Lc/TempSuite8783624855377370512.adam as parquet into RDD...
loading /tmp/adamTestMvnM5Ay7Lc/TempSuite851838798742417557.adam as parquet into RDD...
- transform reads to variant genomic dataset
- cannot have a null processing step ID
- convert a processing description to htsjdk
- GenomicDataset.sort does not fail on unmapped reads
- GenomicDataset.sortLexicographically does not fail on unmapped reads
- left normalize indels
- running base recalibration with downsampling doesn't drop reads
- filter RDD bound alignments by MAPQ
- filter dataset bound alignments by MAPQ
- filter RDD bound unaligned alignments
- filter dataset bound unaligned alignments
- filter RDD bound unpaired alignments
- filter dataset bound unpaired alignments
- filter RDD bound duplicate alignments
- filter dataset bound duplicate alignments
- filter RDD bound alignments to primary alignments
- filter dataset bound alignments to primary alignments
- filter RDD bound alignments to read group
- filter dataset bound alignments to read group
- filter RDD bound alignments to read groups
- filter dataset bound alignments to read groups
- filter RDD bound alignments to sample
- filter dataset bound alignments to sample
- filter RDD bound alignments to samples
- filter dataset bound alignments to samples
- sort by read name
- transform dataset via java API
- convert alignments to reads
SmithWatermanSuite:
- gather max position from simple scoring matrix
- gather max position from irregular scoring matrix
- gather max position from irregular scoring matrix with deletions
- score simple alignment with constant gap
- score irregular scoring matrix
- score irregular scoring matrix with indel
- can unroll cigars correctly
- execute simple trackback
- execute trackback with indel
- run end to end smith waterman for simple reads
- run end to end smith waterman for short sequences with indel
- run end to end smith waterman for longer sequences with snp
- run end to end smith waterman for longer sequences with short indel
- run end to end smith waterman for shorter sequence in longer sequence
- run end to end smith waterman for shorter sequence in longer sequence, with indel
- smithWaterman - simple alignment
MdTagSuite:
- null md tag
- zero length md tag
- md tag with non-digit initial value
- md tag invalid base
- md tag, pure insertion
- md tag, pure insertion, test 2
- md tag pure insertion equality
- md tag equality and hashcode
- valid md tags
- get start of read with no mismatches or deletions
- get start of read with no mismatches, but with a deletion at the start
- get start of read with mismatches at the start
- get end of read with no mismatches or deletions
- check that mdtag and rich record return same end
- get end of read with no mismatches, but a deletion at end
- CIGAR with N operator
- CIGAR with multiple N operators
- CIGAR with P operators
- Get correct matches for mdtag with insertion
- Get correct matches for mdtag with mismatches and insertion
- Get correct matches for mdtag with insertion between mismatches
- Get correct matches for mdtag with intron between mismatches
- Get correct matches for mdtag with intron and deletion between mismatches
- Throw exception when number of deleted bases in mdtag disagrees with CIGAR
- Get correct matches for mdtag with mismatch, insertion and deletion
- Get correct matches for mdtag with mismatches, insertion and deletion
- Get correct matches for MDTag with mismatches and deletions
- Get correct matches base from MDTag and CIGAR with N
- get end of read with mismatches and a deletion at end
- get correct string out of mdtag with no mismatches
- get correct string out of mdtag with mismatches at start
- get correct string out of mdtag with deletion at end
- get correct string out of mdtag with mismatches at end
- get correct string out of complex mdtag
- check complex mdtag
- get gapped reference
- move a cigar alignment by two for a read
- rewrite alignment to all matches
- rewrite alignment to two mismatches followed by all matches
- rewrite alignment to include a deletion but otherwise all matches
- rewrite alignment to include an insertion at the start of the read but otherwise all matches
- create new md tag from read vs. reference, perfect match
- create new md tag from read vs. reference, perfect alignment match, 1 mismatch
- create new md tag from read vs. reference, alignment with deletion
- create new md tag from read vs. reference, alignment with insert
- handle '=' and 'X' operators
- CIGAR/MD tag mismatch should cause errors
GenomicDatasetSuite:
- processing a command that is the spark root directory should return an absolute path
- processing a command that is just a single word should do nothing
- processing a command should handle arguments that include spaces
- processing a command that is a single substitution should succeed
- processing a command that is multiple words should split the string
- process a command that is multiple words with a replacement
- process a command that is multiple words with multiple replacements
ParallelFileMergerSuite:
- cannot write both empty gzip block and cram eof
- buffer size must be non-negative
- get the size of several files
- block size must be positive and non-zero when trying to merge files
- must provide files to merge
- if two files are both below the block size, they should merge into one shard
- merge two files where one is greater than the block size
- merge a sharded sam file
- merge a sharded bam file
- merge a sharded cram file
- can't turn a negative index into a path
- generate a path from an index
IndelTableSuite:
- check for indels in a region with known indels
- check for indels in a contig that doesn't exist
- check for indels in a region without known indels
- build indel table from rdd of variants
SnpTableSuite:
- create an empty snp table
- create a snp table from variants on multiple contigs
- create a snp table from a larger set of variants
- perform lookups on multi-contig snp table
- perform lookups on larger snp table
RealignIndelsSuite:
- map reads to targets
- checking mapping to targets for artificial reads
- checking alternative consensus for artificial reads
- checking extraction of reference from reads
- checking realigned reads for artificial input
- checking realigned reads for artificial input with reference file
- checking realigned reads for artificial input using knowns
- checking realigned reads for artificial input using knowns and reads
- skip realigning reads if target is highly covered
- skip realignment if target is an insufficient LOD improvement
- realign reads to an insertion
- test mismatch quality scoring
- test mismatch quality scoring for no mismatches
- test mismatch quality scoring for offset
- test mismatch quality scoring with early exit
- test mismatch quality scoring after unpacking read
- we shouldn't try to realign a region with no target
- we shouldn't try to realign reads with no indel evidence
- test OP and OC tags
- realign a read with an insertion that goes off the end of the read
- if realigning a target doesn't improve the LOD, don't drop reads
- extract seq/qual from a read with no clipped bases
- extract seq/qual from a read with clipped bases at start
- extract seq/qual from a read with clipped bases at end
- if unclip is selected, don't drop base when extracting from a read with clipped bases
- get cigar and coordinates for read that spans indel, no clipped bases
- get cigar and coordinates for read that spans deletion, clipped bases at start
- get cigar and coordinates for read that falls wholly before insertion
- get cigar and coordinates for read that falls wholly after insertion
- get cigar and coordinates for read that falls wholly after deletion
- get cigar and coordinates for read that partially spans insertion, no clipped bases
- get cigar and coordinates for read that partially spans insertion, clipped bases at end
- get cigar and coordinates for read that partially spans insertion, clipped bases both ends
BaseQualityRecalibrationSuite:
- BQSR Test Input #1 w/ VCF Sites without caching
- BQSR Test Input #1 w/ VCF Sites with caching
- BQSR Test Input #1 w/ VCF Sites with serialized caching
DinucCovariateSuite:
- computing dinucleotide pairs for a single base sequence should return (N,N)
- compute dinucleotide pairs for a string of all valid bases
- compute dinucleotide pairs for a string with an N
- compute covariates for a read on the negative strand
- compute covariates for a read on the positive strand
SequenceDictionarySuite:
- Convert from sam sequence record and back
- Convert from SAM sequence dictionary file (with extra fields)
- merge into existing dictionary
- Convert from SAM sequence dictionary and back
- Can retrieve sequence by name
- SequenceDictionary's with same single element are equal
- SequenceDictionary's with same two elements are equals
- SequenceDictionary's with different elements are unequal
- SequenceDictionaries with same elements in different order are compatible
- isCompatible tests equality on overlap
- The addition + works correctly
- The append operation ++ works correctly
- ContainsRefName works correctly for different string types
- Apply on name works correctly for different String types
- convert from sam sequence record and back
- convert from sam sequence dictionary and back
- conversion to sam sequence dictionary has correct sort order
- load sequence dictionary from VCF file
- empty sequence dictionary must be empty
- test filter to reference name
- test filter to reference names
- test filter to reference name by function
GenomicPositionPartitionerSuite:
- partitions the UNMAPPED ReferencePosition into the top partition
- if we do not have a contig for a record, we throw an IAE
- partitioning into N pieces on M total sequence length, where N > M, results in M partitions
- correctly partitions a single dummy sequence into two pieces
- correctly counts cumulative lengths
- correctly partitions positions across two dummy sequences
- test that we can range partition ADAMRecords
- test that we can range partition ADAMRecords indexed by sample
- test that simple partitioning works okay on a reasonable set of ADAMRecords
- test indexed ReferencePosition partitioning works on a set of indexed ADAMRecords
CoverageSuite:
- Convert to coverage from valid Feature
- Convert to coverage from valid Feature with sampleId
- Convert to coverage from Feature with null/empty contigName fails with correct error
- Convert to coverage from Feature with no start/end position fails with correct error
- Convert to coverage from Feature with no score fails with correct error
InnerTreeRegionJoinSuite:
- Ensure same reference regions get passed together
- Overlapping reference regions
- Multiple reference regions do not throw exception
VariantDatasetSuite:
- union two variant genomic datasets together
- round trip to parquet
- save and reload from partitioned parquet
- use broadcast join to pull down variants mapped to targets
- use right outer broadcast join to pull down variants mapped to targets
- use shuffle join to pull down variants mapped to targets
- use right outer shuffle join to pull down variants mapped to targets
- use left outer shuffle join to pull down variants mapped to targets
- use full outer shuffle join to pull down variants mapped to targets
- use shuffle join with group by to pull down variants mapped to targets
- use right outer shuffle join with group by to pull down variants mapped to targets
- convert back to variant contexts
- load parquet to sql, save, re-read from avro
2020-01-24 10:11:27 WARN  DatasetBoundSliceDataset:190 - Saving directly as Parquet from SQL. Options other than compression codec are ignored.
- transform variants to slice genomic dataset
- transform variants to coverage genomic dataset
- transform variants to feature genomic dataset
- transform variants to fragment genomic dataset
- transform variants to read genomic dataset
- transform variants to genotype genomic dataset
- transform variants to variant context genomic dataset
- filter RDD bound variants to filters passed
- filter dataset bound variants to filters passed
- filter RDD bound variants by quality
- filter dataset bound variants by quality
- filter RDD bound variants by read depth
- filter dataset bound variants by read depth
- filter RDD bound variants by reference read depth
- filter dataset bound variants by reference read depth
- filter RDD bound single nucleotide variants
- filter dataset bound single nucleotide variants
- filter RDD bound multiple nucleotide variants
- filter dataset bound multiple nucleotide variants
- filter RDD bound indel variants
- filter dataset bound indel variants
- filter RDD bound variants to single nucleotide variants
- filter dataset bound variants to single nucleotide variants
- filter RDD bound variants to multiple nucleotide variants
- filter dataset bound variants to multiple nucleotide variants
- filter RDD bound variants to indel variants
- filter dataset bound variants to indel variants
- transform dataset via java API
Run completed in 7 minutes, 49 seconds.
Total number of tests run: 1175
Suites: completed 68, aborted 0
Tests: succeeded 1175, failed 0, canceled 0, ignored 5, pending 0
All tests passed.
[INFO] 
[INFO] <<< scoverage-maven-plugin:1.1.1:report (default-cli) < [scoverage]test @ adam-core-spark2_2.11 <<<
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:report (default-cli) @ adam-core-spark2_2.11 ---
[INFO] [scoverage] Generating cobertura XML report...
[INFO] [scoverage] Generating scoverage XML report...
[INFO] [scoverage] Generating scoverage HTML report...
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ADAM_2.11: APIs for Java, Python 0.30.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-apis-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-apis-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-apis-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-apis-spark2_2.11 ---
[INFO] Modified 0 of 5 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-apis-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-apis-spark2_2.11 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/src/main/scala:-1: info: compiling
[INFO] Compiling 4 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/target/2.11.12/classes at 1579889512658
[WARNING] warning: there were two feature warnings; re-run with -feature for details
[WARNING] one warning found
[INFO] prepare-compile in 0 s
[INFO] compile in 5 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-apis-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-apis-spark2_2.11 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-apis-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 2 resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-apis-spark2_2.11 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/src/test/java:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/src/test/scala:-1: info: compiling
[INFO] Compiling 9 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/target/2.11.12/test-classes at 1579889518339
[INFO] prepare-compile in 0 s
[INFO] compile in 4 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-apis-spark2_2.11 ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 8 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/target/2.11.12/test-classes
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-apis-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-apis-spark2_2.11 ---
Discovery starting.
Discovery completed in 255 milliseconds.
Run starting. Expected test count is: 10
JavaADAMContextSuite:
2020-01-24 10:12:04 WARN  Utils:66 - Your hostname, amp-jenkins-staging-worker-02 resolves to a loopback address: 127.0.1.1; using 192.168.10.32 instead (on interface eno1)
2020-01-24 10:12:04 WARN  Utils:66 - Set SPARK_LOCAL_IP if you need to bind to another address
2020-01-24 10:12:04 WARN  NativeCodeLoader:62 - Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
- can read and write a small .SAM file
- loadIndexedBam with multiple ReferenceRegions
- can read and write a small .SAM file as fragments
- can read and write a small .bed file as features
- can read and write a small .bed file as coverage
- can read and write a small .vcf as genotypes
- can read and write a small .vcf as variants
- can read a two bit file
2020-01-24 10:12:17 WARN  RDDBoundSequenceDataset:190 - asSingleFile = true ignored when saving as Parquet.
- can read and write .fa as sequences
2020-01-24 10:12:18 WARN  RDDBoundSliceDataset:190 - asSingleFile = true ignored when saving as Parquet.
- can read and write .fa as slices
Run completed in 14 seconds, 911 milliseconds.
Total number of tests run: 10
Suites: completed 2, aborted 0
Tests: succeeded 10, failed 0, canceled 0, ignored 0, pending 0
All tests passed.
[INFO] 
[INFO] >>> scoverage-maven-plugin:1.1.1:report (default-cli) > [scoverage]test @ adam-apis-spark2_2.11 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-apis-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-apis-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-apis-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-apis-spark2_2.11 ---
[INFO] Modified 0 of 5 .scala files
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:pre-compile (default-cli) @ adam-apis-spark2_2.11 ---
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-apis-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-apis-spark2_2.11 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/src/main/scala:-1: info: compiling
[INFO] Compiling 4 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/target/2.11.12/scoverage-classes at 1579889539477
[INFO] [info] Cleaning datadir [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/target/scoverage-data]
[INFO] [info] Beginning coverage instrumentation
[INFO] [info] Instrumentation completed [265 statements]
[INFO] [info] Wrote instrumentation file [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/target/scoverage-data/scoverage.coverage.xml]
[INFO] [info] Will write measurement data to [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/target/scoverage-data]
[WARNING] warning: there were two feature warnings; re-run with -feature for details
[WARNING] one warning found
[INFO] prepare-compile in 0 s
[INFO] compile in 6 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-apis-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:post-compile (default-cli) @ adam-apis-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-apis-spark2_2.11 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-apis-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 2 resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-apis-spark2_2.11 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/src/test/java:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/src/test/scala:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/target/generated-test-sources/test-annotations:-1: info: compiling
[INFO] Compiling 9 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/target/2.11.12/test-classes at 1579889546616
[INFO] prepare-compile in 0 s
[INFO] compile in 4 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-apis-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-apis-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-apis-spark2_2.11 ---
Discovery starting.
Discovery completed in 233 milliseconds.
Run starting. Expected test count is: 10
JavaADAMContextSuite:
2020-01-24 10:12:32 WARN  Utils:66 - Your hostname, amp-jenkins-staging-worker-02 resolves to a loopback address: 127.0.1.1; using 192.168.10.32 instead (on interface eno1)
2020-01-24 10:12:32 WARN  Utils:66 - Set SPARK_LOCAL_IP if you need to bind to another address
2020-01-24 10:12:33 WARN  NativeCodeLoader:62 - Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
- can read and write a small .SAM file
- loadIndexedBam with multiple ReferenceRegions
- can read and write a small .SAM file as fragments
- can read and write a small .bed file as features
- can read and write a small .bed file as coverage
- can read and write a small .vcf as genotypes
- can read and write a small .vcf as variants
- can read a two bit file
2020-01-24 10:12:45 WARN  RDDBoundSequenceDataset:190 - asSingleFile = true ignored when saving as Parquet.
- can read and write .fa as sequences
2020-01-24 10:12:46 WARN  RDDBoundSliceDataset:190 - asSingleFile = true ignored when saving as Parquet.
- can read and write .fa as slices
Run completed in 15 seconds, 68 milliseconds.
Total number of tests run: 10
Suites: completed 2, aborted 0
Tests: succeeded 10, failed 0, canceled 0, ignored 0, pending 0
All tests passed.
[INFO] 
[INFO] <<< scoverage-maven-plugin:1.1.1:report (default-cli) < [scoverage]test @ adam-apis-spark2_2.11 <<<
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:report (default-cli) @ adam-apis-spark2_2.11 ---
[INFO] [scoverage] Generating cobertura XML report...
[INFO] [scoverage] Generating scoverage XML report...
[INFO] [scoverage] Generating scoverage HTML report...
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ADAM_2.11: CLI 0.30.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-cli-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-cli-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:timestamp-property (timestamp-property) @ adam-cli-spark2_2.11 ---
[INFO] 
[INFO] --- git-commit-id-plugin:2.2.2:revision (default) @ adam-cli-spark2_2.11 ---
[INFO] 
[INFO] --- templating-maven-plugin:1.0.0:filter-sources (filter-src) @ adam-cli-spark2_2.11 ---
[INFO] Coping files with filtering to temporary directory.
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 1 resource
[INFO] Copied 1 files to output directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/generated-sources/java-templates
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/generated-sources/java-templates added.
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-cli-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-cli-spark2_2.11 ---
[INFO] Modified 0 of 29 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-cli-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-cli-spark2_2.11 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/generated-sources/java-templates:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/src/main/scala:-1: info: compiling
[INFO] Compiling 18 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/2.11.12/classes at 1579889569362
[WARNING] warning: there was one deprecation warning; re-run with -deprecation for details
[WARNING] one warning found
[INFO] prepare-compile in 0 s
[INFO] compile in 8 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-cli-spark2_2.11 ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 1 source file to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/2.11.12/classes
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-cli-spark2_2.11 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-cli-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 15 resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-cli-spark2_2.11 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/src/test/scala:-1: info: compiling
[INFO] Compiling 12 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/2.11.12/test-classes at 1579889577660
[INFO] prepare-compile in 0 s
[INFO] compile in 7 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-cli-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-cli-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-cli-spark2_2.11 ---
Discovery starting.
Discovery completed in 310 milliseconds.
Run starting. Expected test count is: 44
TransformFeaturesSuite:
2020-01-24 10:13:06 WARN  Utils:66 - Your hostname, amp-jenkins-staging-worker-02 resolves to a loopback address: 127.0.1.1; using 192.168.10.32 instead (on interface eno1)
2020-01-24 10:13:06 WARN  Utils:66 - Set SPARK_LOCAL_IP if you need to bind to another address
2020-01-24 10:13:06 WARN  NativeCodeLoader:62 - Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
- can convert a simple BED file
TransformVariantsSuite:
- save a file sorted by contig index
- save a lexicographically sorted file
ViewSuite:
- -f 0 -F 0 is a no-op
- no -f or -F args is a no-op
- -f 4: only unmapped reads
- -F 4: only mapped reads
- -f 4 -F 8: unmapped reads with mapped mates
- -f 12: unmapped reads with unmapped mates
- -g 12: reads that are unmapped or whose mate is unmapped
- -F 12: mapped reads with mapped mates
- -g 36: unmapped reads or reads with mate on negative strand
- -F 36: unmapped reads or reads with mate on negative strand
TransformFragmentsSuite:
- load queryname sorted sam and save as parquet
- cannot sort if not saving as sam
2020-01-24 10:13:23 WARN  TransformFragments:190 - If loading and saving as alignments, consider using TransformAlignments instead
- load reads as sam and save them sorted
- bin quality scores on reads
TransformGenotypesSuite:
- save a file sorted by contig index
- save a lexicographically sorted file
- transform VCF without nested annotations
- transform VCF with nested annotations
AboutSuite:
- template variables have been replaced
- templated values are not empty
CoverageSuite:
- correctly calculates coverage from small sam file
MergeShardsSuite:
- merge shards from unordered sam to unordered sam
- unordered sam to ordered sam
- merge sharded bam
- merge sharded cram
TransformAlignmentsSuite:
- unordered sam to unordered sam
- unordered sam to ordered sam
- unordered sam, to adam, to sam
- unordered sam, to adam, to ordered sam
- put quality scores into bins
- run region predicate
ADAMMainSuite:
- default command groups is non empty
- module provides default command groups
- inject default command groups when called via main
- command groups is empty when called via apply
- single command group
- add new command group to default command groups
- module restores default command groups when called via apply
- custom module with single command group
- custom module with new command group added to default command groups
Adam2FastqSuite:
2020-01-24 10:13:37 WARN  RDDBoundAlignmentDataset:190 - Found 16 read names that don't occur exactly twice:
	1x:	16

Samples:
	SRR062634.16445865
	SRR062634.9119161
	SRR062634.17190076
	SRR062634.17969132
	SRR062634.7301099
	SRR062634.2087100
	SRR062634.20911784
	SRR062634.16769670
	SRR062634.18958430
	SRR062634.12099057
	SRR062634.12606172
	SRR062634.14985224
	SRR062634.10448889
	SRR062634.4789722
	SRR062634.3203184
	SRR062634.17698657
- convert SAM to paired FASTQ
Run completed in 33 seconds, 709 milliseconds.
Total number of tests run: 44
Suites: completed 12, aborted 0
Tests: succeeded 44, failed 0, canceled 0, ignored 0, pending 0
All tests passed.
[INFO] 
[INFO] >>> scoverage-maven-plugin:1.1.1:report (default-cli) > [scoverage]test @ adam-cli-spark2_2.11 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-cli-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-cli-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:timestamp-property (timestamp-property) @ adam-cli-spark2_2.11 ---
[INFO] 
[INFO] --- git-commit-id-plugin:2.2.2:revision (default) @ adam-cli-spark2_2.11 ---
[INFO] 
[INFO] --- templating-maven-plugin:1.0.0:filter-sources (filter-src) @ adam-cli-spark2_2.11 ---
[INFO] Coping files with filtering to temporary directory.
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 1 resource
[INFO] No files needs to be copied to output directory. Up to date: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/generated-sources/java-templates
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/generated-sources/java-templates added.
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-cli-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-cli-spark2_2.11 ---
[INFO] Modified 0 of 29 .scala files
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:pre-compile (default-cli) @ adam-cli-spark2_2.11 ---
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-cli-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-cli-spark2_2.11 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/generated-sources/java-templates:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/src/main/scala:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/generated-sources/annotations:-1: info: compiling
[INFO] Compiling 18 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/2.11.12/scoverage-classes at 1579889619945
[INFO] [info] Cleaning datadir [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/scoverage-data]
[INFO] [info] Beginning coverage instrumentation
[INFO] [info] Instrumentation completed [1468 statements]
[INFO] [info] Wrote instrumentation file [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/scoverage-data/scoverage.coverage.xml]
[INFO] [info] Will write measurement data to [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/scoverage-data]
[WARNING] warning: there was one deprecation warning; re-run with -deprecation for details
[WARNING] one warning found
[INFO] prepare-compile in 0 s
[INFO] compile in 9 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-cli-spark2_2.11 ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 1 source file to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/2.11.12/scoverage-classes
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:post-compile (default-cli) @ adam-cli-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-cli-spark2_2.11 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-cli-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 15 resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-cli-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-cli-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-cli-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-cli-spark2_2.11 ---
Discovery starting.
Discovery completed in 309 milliseconds.
Run starting. Expected test count is: 44
TransformFeaturesSuite:
2020-01-24 10:13:50 WARN  Utils:66 - Your hostname, amp-jenkins-staging-worker-02 resolves to a loopback address: 127.0.1.1; using 192.168.10.32 instead (on interface eno1)
2020-01-24 10:13:50 WARN  Utils:66 - Set SPARK_LOCAL_IP if you need to bind to another address
2020-01-24 10:13:51 WARN  NativeCodeLoader:62 - Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
- can convert a simple BED file
TransformVariantsSuite:
- save a file sorted by contig index
- save a lexicographically sorted file
ViewSuite:
- -f 0 -F 0 is a no-op
- no -f or -F args is a no-op
- -f 4: only unmapped reads
- -F 4: only mapped reads
- -f 4 -F 8: unmapped reads with mapped mates
- -f 12: unmapped reads with unmapped mates
- -g 12: reads that are unmapped or whose mate is unmapped
- -F 12: mapped reads with mapped mates
- -g 36: unmapped reads or reads with mate on negative strand
- -F 36: unmapped reads or reads with mate on negative strand
TransformFragmentsSuite:
- load queryname sorted sam and save as parquet
- cannot sort if not saving as sam
2020-01-24 10:14:08 WARN  TransformFragments:190 - If loading and saving as alignments, consider using TransformAlignments instead
- load reads as sam and save them sorted
- bin quality scores on reads
TransformGenotypesSuite:
- save a file sorted by contig index
- save a lexicographically sorted file
- transform VCF without nested annotations
- transform VCF with nested annotations
AboutSuite:
- template variables have been replaced
- templated values are not empty
CoverageSuite:
- correctly calculates coverage from small sam file
MergeShardsSuite:
- merge shards from unordered sam to unordered sam
- unordered sam to ordered sam
- merge sharded bam
- merge sharded cram
TransformAlignmentsSuite:
- unordered sam to unordered sam
- unordered sam to ordered sam
- unordered sam, to adam, to sam
- unordered sam, to adam, to ordered sam
- put quality scores into bins
- run region predicate
ADAMMainSuite:
- default command groups is non empty
- module provides default command groups
- inject default command groups when called via main
- command groups is empty when called via apply
- single command group
- add new command group to default command groups
- module restores default command groups when called via apply
- custom module with single command group
- custom module with new command group added to default command groups
Adam2FastqSuite:
2020-01-24 10:14:23 WARN  RDDBoundAlignmentDataset:190 - Found 16 read names that don't occur exactly twice:
	1x:	16

Samples:
	SRR062634.16445865
	SRR062634.9119161
	SRR062634.17190076
	SRR062634.17969132
	SRR062634.7301099
	SRR062634.2087100
	SRR062634.20911784
	SRR062634.16769670
	SRR062634.18958430
	SRR062634.12099057
	SRR062634.12606172
	SRR062634.14985224
	SRR062634.10448889
	SRR062634.4789722
	SRR062634.3203184
	SRR062634.17698657
- convert SAM to paired FASTQ
Run completed in 35 seconds, 324 milliseconds.
Total number of tests run: 44
Suites: completed 12, aborted 0
Tests: succeeded 44, failed 0, canceled 0, ignored 0, pending 0
All tests passed.
[INFO] 
[INFO] <<< scoverage-maven-plugin:1.1.1:report (default-cli) < [scoverage]test @ adam-cli-spark2_2.11 <<<
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:report (default-cli) @ adam-cli-spark2_2.11 ---
[INFO] [scoverage] Generating cobertura XML report...
[INFO] [scoverage] Generating scoverage XML report...
[INFO] [scoverage] Generating scoverage HTML report...
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ADAM_2.11: Assembly 0.30.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-assembly-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-assembly-spark2_2.11 ---
[INFO] 
[INFO] --- git-commit-id-plugin:2.2.2:revision (default) @ adam-assembly-spark2_2.11 ---
[INFO] 
[INFO] --- templating-maven-plugin:1.0.0:filter-sources (filter-src) @ adam-assembly-spark2_2.11 ---
[INFO] Request to add '/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/src/main/java-templates' folder. Not added since it does not exist.
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-assembly-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-assembly-spark2_2.11 ---
[INFO] Modified 0 of 1 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-assembly-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-assembly-spark2_2.11 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/src/main/scala:-1: info: compiling
[INFO] Compiling 1 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/target/2.11.12/classes at 1579889667219
[INFO] prepare-compile in 0 s
[INFO] compile in 1 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-assembly-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-assembly-spark2_2.11 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-assembly-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/src/test/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-assembly-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-assembly-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-assembly-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] >>> scoverage-maven-plugin:1.1.1:report (default-cli) > [scoverage]test @ adam-assembly-spark2_2.11 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-assembly-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-assembly-spark2_2.11 ---
[INFO] 
[INFO] --- git-commit-id-plugin:2.2.2:revision (default) @ adam-assembly-spark2_2.11 ---
[INFO] 
[INFO] --- templating-maven-plugin:1.0.0:filter-sources (filter-src) @ adam-assembly-spark2_2.11 ---
[INFO] Request to add '/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/src/main/java-templates' folder. Not added since it does not exist.
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-assembly-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-assembly-spark2_2.11 ---
[INFO] Modified 0 of 1 .scala files
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:pre-compile (default-cli) @ adam-assembly-spark2_2.11 ---
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-assembly-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-assembly-spark2_2.11 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/src/main/scala:-1: info: compiling
[INFO] Compiling 1 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/target/2.11.12/scoverage-classes at 1579889669295
[INFO] [info] Cleaning datadir [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/target/scoverage-data]
[INFO] [info] Beginning coverage instrumentation
[INFO] [info] Instrumentation completed [0 statements]
[INFO] [info] Wrote instrumentation file [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/target/scoverage-data/scoverage.coverage.xml]
[INFO] [info] Will write measurement data to [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/target/scoverage-data]
[INFO] prepare-compile in 0 s
[INFO] compile in 1 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-assembly-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:post-compile (default-cli) @ adam-assembly-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-assembly-spark2_2.11 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-assembly-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/src/test/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-assembly-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-assembly-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-assembly-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] <<< scoverage-maven-plugin:1.1.1:report (default-cli) < [scoverage]test @ adam-assembly-spark2_2.11 <<<
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:report (default-cli) @ adam-assembly-spark2_2.11 ---
[INFO] [scoverage] Generating cobertura XML report...
[INFO] [scoverage] Generating scoverage XML report...
[INFO] [scoverage] Generating scoverage HTML report...
[INFO] [scoverage] Generating aggregated cobertura XML report...
[INFO] [scoverage] Generating aggregated scoverage XML report...
[INFO] [scoverage] Generating aggregated scoverage HTML report...
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO] 
[INFO] ADAM_2.11 .......................................... SUCCESS [ 10.070 s]
[INFO] ADAM_2.11: Avro-to-Dataset codegen utils ........... SUCCESS [ 10.659 s]
[INFO] ADAM_2.11: Core .................................... SUCCESS [18:38 min]
[INFO] ADAM_2.11: APIs for Java, Python ................... SUCCESS [ 55.775 s]
[INFO] ADAM_2.11: CLI ..................................... SUCCESS [01:38 min]
[INFO] ADAM_2.11: Assembly ................................ SUCCESS [ 10.737 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESS
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 21:44 min
[INFO] Finished at: 2020-01-24T10:14:36-08:00
[INFO] Final Memory: 90M/1481M
[INFO] ------------------------------------------------------------------------

# if those pass, build the distribution package
mvn -U \
    -P distribution \
    package \
    -DskipTests \
    -Dhadoop.version=${HADOOP_VERSION} \
    -DargLine=${ADAM_MVN_TMP_DIR}
+ mvn -U -P distribution package -DskipTests -Dhadoop.version=2.7.5 -DargLine=/tmp/adamTestMvnM5Ay7Lc
Java HotSpot(TM) 64-Bit Server VM warning: ignoring option MaxPermSize=1g; support was removed in 8.0
[INFO] Scanning for projects...
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Build Order:
[INFO] 
[INFO] ADAM_2.11
[INFO] ADAM_2.11: Avro-to-Dataset codegen utils
[INFO] ADAM_2.11: Core
[INFO] ADAM_2.11: APIs for Java, Python
[INFO] ADAM_2.11: CLI
[INFO] ADAM_2.11: Assembly
[INFO] ADAM_2.11: Distribution
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ADAM_2.11 0.30.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-parent-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-parent-spark2_2.11 ---
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-parent-spark2_2.11 ---
[INFO] Modified 0 of 243 .scala files
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-parent-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-parent-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-source-plugin:3.0.1:jar-no-fork (attach-sources) @ adam-parent-spark2_2.11 ---
[INFO] 
[INFO] --- maven-javadoc-plugin:3.1.0:jar (attach-javadoc) @ adam-parent-spark2_2.11 ---
[INFO] 
[INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ adam-parent-spark2_2.11 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-parent-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-parent-spark2_2.11 ---
[INFO] 
[INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ adam-parent-spark2_2.11 <<<
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ adam-parent-spark2_2.11 ---
[INFO] No source files found
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ADAM_2.11: Avro-to-Dataset codegen utils 0.30.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-codegen-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-codegen-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-codegen-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-codegen-spark2_2.11 ---
[INFO] Modified 0 of 4 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-codegen-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-codegen-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-codegen-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-codegen-spark2_2.11 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-codegen-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/src/test/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-codegen-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-codegen-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-codegen-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-codegen-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ adam-codegen-spark2_2.11 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/target/adam-codegen-spark2_2.11-0.30.0-SNAPSHOT.jar
[INFO] 
[INFO] --- maven-source-plugin:3.0.1:jar-no-fork (attach-sources) @ adam-codegen-spark2_2.11 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/target/adam-codegen-spark2_2.11-0.30.0-SNAPSHOT-sources.jar
[INFO] 
[INFO] --- maven-javadoc-plugin:3.1.0:jar (attach-javadoc) @ adam-codegen-spark2_2.11 ---
[INFO] 
[INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ adam-codegen-spark2_2.11 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-codegen-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-codegen-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-codegen-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/src/main/scala added.
[INFO] 
[INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ adam-codegen-spark2_2.11 <<<
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ adam-codegen-spark2_2.11 ---
model contains 11 documentable templates
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/target/adam-codegen-spark2_2.11-0.30.0-SNAPSHOT-javadoc.jar
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ADAM_2.11: Core 0.30.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
Downloading: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/bdg-formats/bdg-formats/0.15.0-SNAPSHOT/maven-metadata.xml
793/793 B   
            
Downloaded: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/bdg-formats/bdg-formats/0.15.0-SNAPSHOT/maven-metadata.xml (793 B at 1.3 KB/sec)
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-core-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-core-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-core-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala added.
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/generated-sources/src/main/scala added.
[INFO] 
[INFO] --- exec-maven-plugin:1.5.0:java (generate-scala-products) @ adam-core-spark2_2.11 ---
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] 
[INFO] --- exec-maven-plugin:1.5.0:java (generate-scala-projection-fields) @ adam-core-spark2_2.11 ---
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-core-spark2_2.11 ---
[INFO] Modified 2 of 203 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-core-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-core-spark2_2.11 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/java:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/generated-sources/src/main/scala:-1: info: compiling
[INFO] Compiling 138 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/2.11.12/classes at 1579889699978
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicDataset.scala:3099: warning: no valid targets for annotation on value uTag - it is discarded unused. You may specify targets with meta-annotations, e.g. @(transient @getter)
[WARNING]   @transient val uTag: TypeTag[U]
[WARNING]    ^
[WARNING] warning: there were 89 deprecation warnings; re-run with -deprecation for details
[WARNING] warning: there were 5 feature warnings; re-run with -feature for details
[WARNING] three warnings found
[INFO] prepare-compile in 0 s
[INFO] compile in 34 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-core-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-core-spark2_2.11 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-core-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 152 resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-core-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-core-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-core-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-core-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ adam-core-spark2_2.11 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/adam-core-spark2_2.11-0.30.0-SNAPSHOT.jar
[INFO] 
[INFO] --- maven-source-plugin:3.0.1:jar-no-fork (attach-sources) @ adam-core-spark2_2.11 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/adam-core-spark2_2.11-0.30.0-SNAPSHOT-sources.jar
[INFO] 
[INFO] --- maven-javadoc-plugin:3.1.0:jar (attach-javadoc) @ adam-core-spark2_2.11 ---
[INFO] The goal 'org.apache.maven.plugins:maven-javadoc-plugin:3.1.0:javadoc' has not been previously called for the module: 'org.bdgenomics.adam:adam-codegen-spark2_2.11:jar:0.30.0-SNAPSHOT'. Trying to invoke it...
Java HotSpot(TM) 64-Bit Server VM warning: ignoring option MaxPermSize=1g; support was removed in 8.0
[WARNING] Creating fake javadoc directory to prevent repeated invocations: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/target/apidocs
[ERROR] Error fetching link: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/target/apidocs. Ignored it.
[INFO] 
Loading source files for package org.bdgenomics.adam.io...
Constructing Javadoc information...
Standard Doclet version 1.8.0_191
Building tree for all the packages and classes...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/FastqInputFormat.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/FastqRecordReader.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/InterleavedFastqInputFormat.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/SingleFastqInputFormat.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/package-frame.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/package-summary.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/package-tree.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/constant-values.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/class-use/SingleFastqInputFormat.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/class-use/FastqRecordReader.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/class-use/FastqInputFormat.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/class-use/InterleavedFastqInputFormat.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/package-use.html...
Building index for all the packages and classes...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/overview-tree.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/index-all.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/deprecated-list.html...
Building index for all classes...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/allclasses-frame.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/allclasses-noframe.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/index.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/help-doc.html...
6 warnings
[WARNING] Javadoc Warnings
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/java/org/bdgenomics/adam/io/FastqRecordReader.java:235: warning: no @param for codec
[WARNING] protected final int positionAtFirstRecord(final FSDataInputStream stream,
[WARNING] ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/java/org/bdgenomics/adam/io/FastqRecordReader.java:235: warning: no @return
[WARNING] protected final int positionAtFirstRecord(final FSDataInputStream stream,
[WARNING] ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/java/org/bdgenomics/adam/io/FastqRecordReader.java:235: warning: no @throws for java.io.IOException
[WARNING] protected final int positionAtFirstRecord(final FSDataInputStream stream,
[WARNING] ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/java/org/bdgenomics/adam/io/FastqRecordReader.java:389: warning: no @throws for java.io.IOException
[WARNING] protected final boolean lowLevelFastqRead(final Text readName, final Text value)
[WARNING] ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/java/org/bdgenomics/adam/io/FastqRecordReader.java:431: warning: no @throws for java.io.IOException
[WARNING] abstract protected boolean next(Text value) throws IOException;
[WARNING] ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/java/org/bdgenomics/adam/io/FastqRecordReader.java:154: warning: no @throws for java.io.IOException
[WARNING] protected FastqRecordReader(final Configuration conf,
[WARNING] ^
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/adam-core-spark2_2.11-0.30.0-SNAPSHOT-javadoc.jar
[INFO] 
[INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ adam-core-spark2_2.11 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-core-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-core-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-core-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala added.
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/generated-sources/src/main/scala added.
[INFO] 
[INFO] --- exec-maven-plugin:1.5.0:java (generate-scala-products) @ adam-core-spark2_2.11 ---
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] 
[INFO] --- exec-maven-plugin:1.5.0:java (generate-scala-projection-fields) @ adam-core-spark2_2.11 ---
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] 
[INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ adam-core-spark2_2.11 <<<
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ adam-core-spark2_2.11 ---
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverters.scala:274: warning: discarding unmoored doc comment
    /**
    ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentDataset.scala:844: warning: Octal escape literals are deprecated, use \u0001 instead.
      binaryCodec.writeBytes("BAM\001".getBytes())
                                 ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rich/RichCigar.scala:43: warning: discarding unmoored doc comment
    /**
    ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicDataset.scala:3099: warning: no valid targets for annotation on value uTag - it is discarded unused. You may specify targets with meta-annotations, e.g. @(transient @getter)
  @transient val uTag: TypeTag[U]
   ^
warning: there were 5 feature warnings; re-run with -feature for details
model contains 287 documentable templates
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/util/AttributeUtils.scala:70: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/projections/Projection.scala:45: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala:1815: warning: Could not find any member to link for "FileNotFoundException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala:1844: warning: Could not find any member to link for "FileNotFoundException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala:1864: warning: Could not find any member to link for "FileNotFoundException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicPartitioners.scala:75: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicPartitioners.scala:178: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala:474: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala:3491: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala:429: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicDataset.scala:755: warning: Variable x undefined in comment for method pipe in trait GenomicDataset
   * Files are substituted in to the command with a $x syntax. E.g., to invoke
                                                     ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicDataset.scala:756: warning: Variable 0 undefined in comment for method pipe in trait GenomicDataset
   * a command that uses the first file from the files Seq, use $0. To access
                                                                 ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicDataset.scala:757: warning: Variable root undefined in comment for method pipe in trait GenomicDataset
   * the path to the directory where the files are copied, use $root.
                                                                ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/models/ReadGroupDictionary.scala:47: warning: Could not find any member to link for "IllegalArgumentException".
/**
^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/models/Alphabet.scala:44: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala:258: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala:242: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala:444: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala:354: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
24 warnings found
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/adam-core-spark2_2.11-0.30.0-SNAPSHOT-javadoc.jar
[INFO] 
[INFO] --- maven-jar-plugin:3.2.0:test-jar (default) @ adam-core-spark2_2.11 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/adam-core-spark2_2.11-0.30.0-SNAPSHOT-tests.jar
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ADAM_2.11: APIs for Java, Python 0.30.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-apis-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-apis-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-apis-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-apis-spark2_2.11 ---
[INFO] Modified 0 of 5 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-apis-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-apis-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-apis-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-apis-spark2_2.11 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-apis-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 2 resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-apis-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-apis-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-apis-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-apis-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ adam-apis-spark2_2.11 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/target/adam-apis-spark2_2.11-0.30.0-SNAPSHOT.jar
[INFO] 
[INFO] --- maven-source-plugin:3.0.1:jar-no-fork (attach-sources) @ adam-apis-spark2_2.11 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/target/adam-apis-spark2_2.11-0.30.0-SNAPSHOT-sources.jar
[INFO] 
[INFO] --- maven-javadoc-plugin:3.1.0:jar (attach-javadoc) @ adam-apis-spark2_2.11 ---
[INFO] 
[INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ adam-apis-spark2_2.11 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-apis-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-apis-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-apis-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/src/main/scala added.
[INFO] 
[INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ adam-apis-spark2_2.11 <<<
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ adam-apis-spark2_2.11 ---
warning: there were two feature warnings; re-run with -feature for details
model contains 192 documentable templates
one warning found
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/target/adam-apis-spark2_2.11-0.30.0-SNAPSHOT-javadoc.jar
[INFO] 
[INFO] --- maven-jar-plugin:3.2.0:test-jar (default) @ adam-apis-spark2_2.11 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/target/adam-apis-spark2_2.11-0.30.0-SNAPSHOT-tests.jar
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ADAM_2.11: CLI 0.30.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-cli-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-cli-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:timestamp-property (timestamp-property) @ adam-cli-spark2_2.11 ---
[INFO] 
[INFO] --- git-commit-id-plugin:2.2.2:revision (default) @ adam-cli-spark2_2.11 ---
[INFO] 
[INFO] --- templating-maven-plugin:1.0.0:filter-sources (filter-src) @ adam-cli-spark2_2.11 ---
[INFO] Coping files with filtering to temporary directory.
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 1 resource
[INFO] No files needs to be copied to output directory. Up to date: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/generated-sources/java-templates
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/generated-sources/java-templates added.
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-cli-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-cli-spark2_2.11 ---
[INFO] Modified 0 of 29 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-cli-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-cli-spark2_2.11 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/generated-sources/java-templates:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/src/main/scala:-1: info: compiling
[INFO] Compiling 18 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/2.11.12/classes at 1579889785446
[WARNING] warning: there was one deprecation warning; re-run with -deprecation for details
[WARNING] one warning found
[INFO] prepare-compile in 0 s
[INFO] compile in 8 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-cli-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-cli-spark2_2.11 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-cli-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 15 resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-cli-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-cli-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-cli-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-cli-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ adam-cli-spark2_2.11 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/adam-cli-spark2_2.11-0.30.0-SNAPSHOT.jar
[INFO] 
[INFO] --- maven-source-plugin:3.0.1:jar-no-fork (attach-sources) @ adam-cli-spark2_2.11 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/adam-cli-spark2_2.11-0.30.0-SNAPSHOT-sources.jar
[INFO] 
[INFO] --- maven-javadoc-plugin:3.1.0:jar (attach-javadoc) @ adam-cli-spark2_2.11 ---
[INFO] The goal 'org.apache.maven.plugins:maven-javadoc-plugin:3.1.0:javadoc' has not been previously called for the module: 'org.bdgenomics.adam:adam-apis-spark2_2.11:jar:0.30.0-SNAPSHOT'. Trying to invoke it...
Java HotSpot(TM) 64-Bit Server VM warning: ignoring option MaxPermSize=1g; support was removed in 8.0
[WARNING] Creating fake javadoc directory to prevent repeated invocations: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/target/apidocs
[ERROR] Error fetching link: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/target/apidocs. Ignored it.
[INFO] 
Loading source files for package org.bdgenomics.adam.cli...
Constructing Javadoc information...
Standard Doclet version 1.8.0_191
Building tree for all the packages and classes...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/apidocs/org/bdgenomics/adam/cli/About.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/apidocs/org/bdgenomics/adam/cli/package-frame.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/apidocs/org/bdgenomics/adam/cli/package-summary.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/apidocs/org/bdgenomics/adam/cli/package-tree.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/apidocs/constant-values.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/apidocs/org/bdgenomics/adam/cli/class-use/About.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/apidocs/org/bdgenomics/adam/cli/package-use.html...
Building index for all the packages and classes...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/apidocs/overview-tree.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/apidocs/index-all.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/apidocs/deprecated-list.html...
Building index for all classes...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/apidocs/allclasses-frame.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/apidocs/allclasses-noframe.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/apidocs/index.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/apidocs/help-doc.html...
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/adam-cli-spark2_2.11-0.30.0-SNAPSHOT-javadoc.jar
[INFO] 
[INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ adam-cli-spark2_2.11 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-cli-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-cli-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:timestamp-property (timestamp-property) @ adam-cli-spark2_2.11 ---
[INFO] 
[INFO] --- git-commit-id-plugin:2.2.2:revision (default) @ adam-cli-spark2_2.11 ---
[INFO] 
[INFO] --- templating-maven-plugin:1.0.0:filter-sources (filter-src) @ adam-cli-spark2_2.11 ---
[INFO] Coping files with filtering to temporary directory.
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 1 resource
[INFO] No files needs to be copied to output directory. Up to date: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/generated-sources/java-templates
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/generated-sources/java-templates added.
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-cli-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/src/main/scala added.
[INFO] 
[INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ adam-cli-spark2_2.11 <<<
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ adam-cli-spark2_2.11 ---
model contains 55 documentable templates
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/adam-cli-spark2_2.11-0.30.0-SNAPSHOT-javadoc.jar
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ADAM_2.11: Assembly 0.30.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-assembly-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-assembly-spark2_2.11 ---
[INFO] 
[INFO] --- git-commit-id-plugin:2.2.2:revision (default) @ adam-assembly-spark2_2.11 ---
[INFO] 
[INFO] --- templating-maven-plugin:1.0.0:filter-sources (filter-src) @ adam-assembly-spark2_2.11 ---
[INFO] Request to add '/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/src/main/java-templates' folder. Not added since it does not exist.
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-assembly-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-assembly-spark2_2.11 ---
[INFO] Modified 0 of 1 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-assembly-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-assembly-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-assembly-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-assembly-spark2_2.11 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-assembly-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/src/test/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-assembly-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-assembly-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-assembly-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ adam-assembly-spark2_2.11 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/target/adam-assembly-spark2_2.11-0.30.0-SNAPSHOT.jar
[INFO] 
[INFO] --- maven-source-plugin:3.0.1:jar-no-fork (attach-sources) @ adam-assembly-spark2_2.11 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/target/adam-assembly-spark2_2.11-0.30.0-SNAPSHOT-sources.jar
[INFO] 
[INFO] --- maven-javadoc-plugin:3.1.0:jar (attach-javadoc) @ adam-assembly-spark2_2.11 ---
[INFO] 
[INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ adam-assembly-spark2_2.11 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-assembly-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-assembly-spark2_2.11 ---
[INFO] 
[INFO] --- git-commit-id-plugin:2.2.2:revision (default) @ adam-assembly-spark2_2.11 ---
[INFO] 
[INFO] --- templating-maven-plugin:1.0.0:filter-sources (filter-src) @ adam-assembly-spark2_2.11 ---
[INFO] Request to add '/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/src/main/java-templates' folder. Not added since it does not exist.
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-assembly-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/src/main/scala added.
[INFO] 
[INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ adam-assembly-spark2_2.11 <<<
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ adam-assembly-spark2_2.11 ---
model contains 6 documentable templates
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/target/adam-assembly-spark2_2.11-0.30.0-SNAPSHOT-javadoc.jar
[INFO] 
[INFO] --- maven-shade-plugin:3.2.0:shade (default) @ adam-assembly-spark2_2.11 ---
[INFO] Including org.bdgenomics.adam:adam-cli-spark2_2.11:jar:0.30.0-SNAPSHOT in the shaded jar.
[INFO] Including org.bdgenomics.utils:utils-misc-spark2_2.11:jar:0.2.15 in the shaded jar.
[INFO] Including org.bdgenomics.utils:utils-io-spark2_2.11:jar:0.2.15 in the shaded jar.
[INFO] Including org.apache.httpcomponents:httpclient:jar:4.5.7 in the shaded jar.
[INFO] Including org.apache.httpcomponents:httpcore:jar:4.4.11 in the shaded jar.
[INFO] Including commons-logging:commons-logging:jar:1.2 in the shaded jar.
[INFO] Including commons-codec:commons-codec:jar:1.11 in the shaded jar.
[INFO] Including org.bdgenomics.utils:utils-cli-spark2_2.11:jar:0.2.15 in the shaded jar.
[INFO] Including org.clapper:grizzled-slf4j_2.11:jar:1.3.3 in the shaded jar.
[INFO] Including org.apache.parquet:parquet-avro:jar:1.11.0 in the shaded jar.
[INFO] Including org.apache.parquet:parquet-format-structures:jar:1.11.0 in the shaded jar.
[INFO] Including javax.annotation:javax.annotation-api:jar:1.3.2 in the shaded jar.
[INFO] Including org.bdgenomics.utils:utils-metrics-spark2_2.11:jar:0.2.15 in the shaded jar.
[INFO] Including com.netflix.servo:servo-core:jar:0.12.25 in the shaded jar.
[INFO] Including com.netflix.spectator:spectator-api:jar:0.67.0 in the shaded jar.
[INFO] Including org.slf4j:slf4j-api:jar:1.7.25 in the shaded jar.
[INFO] Including org.bdgenomics.bdg-formats:bdg-formats:jar:0.15.0-SNAPSHOT in the shaded jar.
[INFO] Including org.apache.avro:avro:jar:1.8.2 in the shaded jar.
[INFO] Including org.codehaus.jackson:jackson-core-asl:jar:1.9.13 in the shaded jar.
[INFO] Including org.codehaus.jackson:jackson-mapper-asl:jar:1.9.13 in the shaded jar.
[INFO] Including com.thoughtworks.paranamer:paranamer:jar:2.8 in the shaded jar.
[INFO] Including org.xerial.snappy:snappy-java:jar:1.1.1.3 in the shaded jar.
[INFO] Including org.apache.commons:commons-compress:jar:1.8.1 in the shaded jar.
[INFO] Including org.tukaani:xz:jar:1.5 in the shaded jar.
[INFO] Including org.bdgenomics.adam:adam-core-spark2_2.11:jar:0.30.0-SNAPSHOT in the shaded jar.
[INFO] Including org.bdgenomics.utils:utils-intervalrdd-spark2_2.11:jar:0.2.15 in the shaded jar.
[INFO] Including com.esotericsoftware.kryo:kryo:jar:2.24.0 in the shaded jar.
[INFO] Including com.esotericsoftware.minlog:minlog:jar:1.2 in the shaded jar.
[INFO] Including org.objenesis:objenesis:jar:2.1 in the shaded jar.
[INFO] Including commons-io:commons-io:jar:2.6 in the shaded jar.
[INFO] Including it.unimi.dsi:fastutil:jar:6.6.5 in the shaded jar.
[INFO] Including org.apache.parquet:parquet-column:jar:1.11.0 in the shaded jar.
[INFO] Including org.apache.parquet:parquet-common:jar:1.11.0 in the shaded jar.
[INFO] Including org.apache.yetus:audience-annotations:jar:0.11.0 in the shaded jar.
[INFO] Including org.apache.parquet:parquet-encoding:jar:1.11.0 in the shaded jar.
[INFO] Including org.apache.parquet:parquet-hadoop:jar:1.11.0 in the shaded jar.
[INFO] Including org.apache.parquet:parquet-jackson:jar:1.11.0 in the shaded jar.
[INFO] Including commons-pool:commons-pool:jar:1.6 in the shaded jar.
[INFO] Including org.seqdoop:hadoop-bam:jar:7.9.2 in the shaded jar.
[INFO] Including com.github.jsr203hadoop:jsr203hadoop:jar:1.0.3 in the shaded jar.
[INFO] Including com.github.samtools:htsjdk:jar:2.19.0 in the shaded jar.
[INFO] Including org.apache.commons:commons-jexl:jar:2.1.1 in the shaded jar.
[INFO] Including gov.nih.nlm.ncbi:ngs-java:jar:2.9.0 in the shaded jar.
[INFO] Including com.google.guava:guava:jar:27.0-jre in the shaded jar.
[INFO] Including com.google.guava:failureaccess:jar:1.0 in the shaded jar.
[INFO] Including com.google.guava:listenablefuture:jar:9999.0-empty-to-avoid-conflict-with-guava in the shaded jar.
[INFO] Including org.checkerframework:checker-qual:jar:2.5.2 in the shaded jar.
[INFO] Including com.google.errorprone:error_prone_annotations:jar:2.2.0 in the shaded jar.
[INFO] Including com.google.j2objc:j2objc-annotations:jar:1.1 in the shaded jar.
[INFO] Including org.codehaus.mojo:animal-sniffer-annotations:jar:1.17 in the shaded jar.
[INFO] Including org.bdgenomics.adam:adam-codegen-spark2_2.11:jar:0.30.0-SNAPSHOT in the shaded jar.
[INFO] Including org.bdgenomics.adam:adam-apis-spark2_2.11:jar:0.30.0-SNAPSHOT in the shaded jar.
[INFO] Including args4j:args4j:jar:2.33 in the shaded jar.
[INFO] Including net.codingwell:scala-guice_2.11:jar:4.2.1 in the shaded jar.
[INFO] Including com.google.inject:guice:jar:4.2.0 in the shaded jar.
[INFO] Including javax.inject:javax.inject:jar:1 in the shaded jar.
[INFO] Including aopalliance:aopalliance:jar:1.0 in the shaded jar.
[INFO] Including org.scala-lang:scala-reflect:jar:2.11.12 in the shaded jar.
[INFO] Including com.google.code.findbugs:jsr305:jar:1.3.9 in the shaded jar.
[WARNING] parquet-column-1.11.0.jar, parquet-avro-1.11.0.jar define 531 overlapping classes: 
[WARNING]   - shaded.parquet.it.unimi.dsi.fastutil.doubles.Double2IntMap$FastEntrySet
[WARNING]   - shaded.parquet.it.unimi.dsi.fastutil.ints.Int2IntMap$FastEntrySet
[WARNING]   - shaded.parquet.it.unimi.dsi.fastutil.floats.FloatIterators$SingletonIterator
[WARNING]   - shaded.parquet.it.unimi.dsi.fastutil.ints.AbstractInt2IntMap$2
[WARNING]   - shaded.parquet.it.unimi.dsi.fastutil.ints.AbstractInt2IntMap
[WARNING]   - shaded.parquet.it.unimi.dsi.fastutil.longs.Long2IntMaps$UnmodifiableMap
[WARNING]   - shaded.parquet.it.unimi.dsi.fastutil.booleans.BooleanIterators$UnmodifiableListIterator
[WARNING]   - shaded.parquet.it.unimi.dsi.fastutil.ints.Int2IntMaps
[WARNING]   - shaded.parquet.it.unimi.dsi.fastutil.doubles.AbstractDoubleSortedSet
[WARNING]   - shaded.parquet.it.unimi.dsi.fastutil.doubles.Double2IntMaps$EmptyMap
[WARNING]   - 521 more...
[WARNING] parquet-column-1.11.0.jar, parquet-hadoop-1.11.0.jar, parquet-avro-1.11.0.jar define 50 overlapping classes: 
[WARNING]   - shaded.parquet.it.unimi.dsi.fastutil.ints.IntArrays
[WARNING]   - shaded.parquet.it.unimi.dsi.fastutil.ints.IntIterators$EmptyIterator
[WARNING]   - shaded.parquet.it.unimi.dsi.fastutil.ints.AbstractIntCollection
[WARNING]   - shaded.parquet.it.unimi.dsi.fastutil.ints.IntIterators$UnmodifiableIterator
[WARNING]   - shaded.parquet.it.unimi.dsi.fastutil.ints.AbstractIntList
[WARNING]   - shaded.parquet.it.unimi.dsi.fastutil.Arrays
[WARNING]   - shaded.parquet.it.unimi.dsi.fastutil.ints.IntArrays$1
[WARNING]   - shaded.parquet.it.unimi.dsi.fastutil.ints.IntArrays$ArrayHashStrategy
[WARNING]   - shaded.parquet.it.unimi.dsi.fastutil.ints.IntComparator
[WARNING]   - shaded.parquet.it.unimi.dsi.fastutil.ints.IntArrayList$1
[WARNING]   - 40 more...
[WARNING] guava-27.0-jre.jar, failureaccess-1.0.jar define 2 overlapping classes: 
[WARNING]   - com.google.common.util.concurrent.internal.InternalFutureFailureAccess
[WARNING]   - com.google.common.util.concurrent.internal.InternalFutures
[WARNING] maven-shade-plugin has detected that some class files are
[WARNING] present in two or more JARs. When this happens, only one
[WARNING] single version of the class is copied to the uber jar.
[WARNING] Usually this is not harmful and you can skip these warnings,
[WARNING] otherwise try to manually exclude artifacts based on
[WARNING] mvn dependency:tree -Ddetail=true and the above output.
[WARNING] See http://maven.apache.org/plugins/maven-shade-plugin/
[INFO] Replacing original artifact with shaded artifact.
[INFO] Replacing /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/target/adam-assembly-spark2_2.11-0.30.0-SNAPSHOT.jar with /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/target/adam-assembly-spark2_2.11-0.30.0-SNAPSHOT-shaded.jar
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ADAM_2.11: Distribution 0.30.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-distribution-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-distribution-spark2_2.11 ---
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-distribution-spark2_2.11 ---
[INFO] Modified 0 of 0 .scala files
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-distribution-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-distribution-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-source-plugin:3.0.1:jar-no-fork (attach-sources) @ adam-distribution-spark2_2.11 ---
[INFO] 
[INFO] --- maven-javadoc-plugin:3.1.0:jar (attach-javadoc) @ adam-distribution-spark2_2.11 ---
[INFO] 
[INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ adam-distribution-spark2_2.11 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-distribution-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-distribution-spark2_2.11 ---
[INFO] 
[INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ adam-distribution-spark2_2.11 <<<
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ adam-distribution-spark2_2.11 ---
[INFO] No source files found
[INFO] 
[INFO] --- maven-assembly-plugin:3.2.0:single (default) @ adam-distribution-spark2_2.11 ---
[INFO] Reading assembly descriptor: src/main/assembly/assembly.xml
[INFO] Building tar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-distribution/target/adam-distribution-spark2_2.11-0.30.0-SNAPSHOT-bin.tar.gz
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/smithwaterman/ longer than 100 characters.
[WARNING] Resulting tar file can only be processed successfully by GNU compatible tar commands
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/AttributeUtils$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/FileExtensions$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/IndexedFastaFile.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/TextRddWriter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/GenomeFileReader$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ReferenceContigMapSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ParquetLogger$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/SequenceDictionaryReader$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ParquetFileTraversable.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ReferenceContigMap$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/TwoBitFileSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ReferenceContigMap.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/converters/AlignmentConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/converters/VariantContextConverter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/converters/VariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/converters/DefaultHeaderLines$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/io/FastqRecordReader.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/io/SingleFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/io/InterleavedFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/io/FastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantCallingAnnotations$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantAnnotation.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantAnnotation$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantContext$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantCallingAnnotations.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/TranscriptEffect.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/TranscriptEffect$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/ProcessingStep$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/VariantCallingAnnotationsField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/package.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FeatureField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/ReadField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FieldValue.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/SliceField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/TranscriptEffectField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/GenotypeField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FieldEnumeration.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/VariantField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/Projection$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/ReadGroupField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/ReferenceField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/SequenceField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/VariantAnnotationField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/OntologyTermField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/Filter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FieldEnumeration$SchemaVal.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/SampleField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/AlignmentField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FragmentField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/DbxrefField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InnerShuffleRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicPositionPartitioner.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InnerTreeRegionJoinAndGroupByRight.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/AvroReadGroupGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicRegionPartitioner$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicRegionPartitioner.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InFormatterCompanion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenericGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/ADAMVCFOutputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/ParquetUnboundVariantDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VariantDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/DatasetBoundGenotypeDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VariantContextDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VariantContextDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/package.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/GenotypeDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/ParquetUnboundGenotypeDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/DatasetBoundVariantContextDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VCFInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VCFInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/RDDBoundVariantContextDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VariantDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/RDDBoundVariantDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/GenotypeDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/RDDBoundGenotypeDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/DatasetBoundVariantDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VCFOutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/DatasetBoundGenericGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicBroadcast.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InnerTreeRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/NarrowPeakOutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GFF3InFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/package.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GTFInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/FeatureDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/NarrowPeakInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/ParquetUnboundFeatureDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/RDDBoundFeatureDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/BEDOutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GFF3InFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/DatasetBoundCoverageDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GTFInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/BEDInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/CoverageDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/BEDInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/NarrowPeakInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/ParquetUnboundCoverageDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GFF3OutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/CoverageDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GTFOutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/DatasetBoundFeatureDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/FeatureDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/RDDBoundCoverageDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/RightOuterTreeRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InnerShuffleRegionJoinAndGroupByLeft.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/RightOuterShuffleRegionJoinAndGroupByLeft.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/ShuffleRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/AvroGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/DatasetBoundGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenericConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/LeftOuterShuffleRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/FullOuterShuffleRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/MultisampleAvroGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/SequenceDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/RDDBoundSliceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/package.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/DatasetBoundSequenceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/FASTAInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/ParquetUnboundSliceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/DatasetBoundSliceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/SliceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/SliceDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/FASTAInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/SequenceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/ParquetUnboundSequenceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/RDDBoundSequenceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/RDDBoundGenericGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/ReferencePartitioner.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/MultisampleGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/RightOuterTreeRegionJoinAndGroupByRight.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/VictimlessSortedIntervalPartitionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicPositionPartitioner$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/LeftOuterShuffleRegionJoinAndGroupByLeft.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/InstrumentedADAMBAMOutputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/InstrumentedADAMSAMOutputFormatHeaderLess.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMSAMOutputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMCRAMOutputFormatHeaderLess.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ReferencePositionPairSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ParquetUnboundAlignmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/InstrumentedADAMSAMOutputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMSAMOutputFormatHeaderLess.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ReadDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AlignmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMBAMOutputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/RDDBoundReadDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/DatasetBoundAlignmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/InstrumentedADAMBAMOutputFormatHeaderLess.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMBAMOutputFormatHeaderLess.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/DatasetBoundReadDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AnySAMOutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/QualityScoreBin$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ReadDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/SAMInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/InstrumentedADAMCRAMOutputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/SAMInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/BAMInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMCRAMOutputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/FASTQInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/FASTQInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AlignmentDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AnySAMInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/QualityScoreBin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/RDDBoundAlignmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/BAMInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/InstrumentedADAMCRAMOutputFormatHeaderLess.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AnySAMInFormatterCompanion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/SingleReadBucketSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/IncorrectMDTagException.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ParquetUnboundReadDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/SortedIntervalPartitionJoinWithVictims.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/ADAMSaveAnyArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/Tab5InFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/ParquetUnboundFragmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/FragmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/package.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/Tab6InFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/RDDBoundFragmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/Tab6InFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/InterleavedFASTQInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/Tab5InFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/FragmentDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/DatasetBoundFragmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/InterleavedFASTQInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicDatasetWithLineage.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rich/RichAlignment$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/instrumentation/package.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/instrumentation/Timers$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/smithwaterman/package.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/smithwaterman/SmithWaterman.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/smithwaterman/SmithWatermanConstantGapScoring.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/consensus/package.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/consensus/ConsensusGenerator.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/consensus/ConsensusGenerator$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferencePosition$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/OptionalReferenceOrdering.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/TagType$$TypeVal.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferenceRegion$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferencePositionSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/SequenceDictionary.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/SequenceRecord$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReadGroupDictionary.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferenceRegionSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/OptionalPositionOrdering$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/PositionOrdering$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/VariantContext.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/VariantContext$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/SequenceDictionary$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferenceOrdering.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferenceRegion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/SequenceRecord.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/OptionalRegionOrdering$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReadGroupDictionary$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/RegionOrdering$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferencePosition.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/VariantContextSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/package.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/InputStreamWithDecoder.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/AvroSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/ADAMKryoRegistrator.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/WritableSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/FastqRecordReader.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/SingleFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/InterleavedFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/class-use/FastqRecordReader.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/class-use/SingleFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/class-use/InterleavedFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/class-use/FastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/python/DataFrameConversionWrapper.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToVariantContextsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToAlignmentDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToSequenceDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToCoverageDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToVariantContextDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToReadDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToVariantContextsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToGenotypeDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToSliceDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToFeatureConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/JavaADAMContext$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToFeatureDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToVariantDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToVariantContextsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToFragmentDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/JavaADAMContext.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSlices.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformGenotypes$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformGenotypesArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFeaturesArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformAlignments$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformVariantsArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformGenotypes.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSequences$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformVariants$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountSliceKmers$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFragments$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformAlignmentsArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFragments.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSequencesArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformAlignments.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFragmentsArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/MergeShardsArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformVariants.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountSliceKmers.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSlicesArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountSliceKmersArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountReadKmers$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSequences.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFeatures.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountReadKmersArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSlices$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFeatures$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/repo/adam-assembly-spark2_2.11-0.30.0-SNAPSHOT-javadoc.jar longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/repo/adam-assembly-spark2_2.11-0.30.0-SNAPSHOT-sources.jar longer than 100 characters.
[INFO] Building tar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-distribution/target/adam-distribution-spark2_2.11-0.30.0-SNAPSHOT-bin.tar.bz2
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/smithwaterman/ longer than 100 characters.
[WARNING] Resulting tar file can only be processed successfully by GNU compatible tar commands
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/AttributeUtils$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/FileExtensions$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/IndexedFastaFile.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/TextRddWriter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/GenomeFileReader$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ReferenceContigMapSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ParquetLogger$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/SequenceDictionaryReader$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ParquetFileTraversable.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ReferenceContigMap$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/TwoBitFileSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ReferenceContigMap.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/converters/AlignmentConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/converters/VariantContextConverter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/converters/VariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/converters/DefaultHeaderLines$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/io/FastqRecordReader.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/io/SingleFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/io/InterleavedFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/io/FastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantCallingAnnotations$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantAnnotation.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantAnnotation$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantContext$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantCallingAnnotations.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/TranscriptEffect.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/TranscriptEffect$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/ProcessingStep$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/VariantCallingAnnotationsField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/package.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FeatureField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/ReadField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FieldValue.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/SliceField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/TranscriptEffectField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/GenotypeField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FieldEnumeration.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/VariantField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/Projection$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/ReadGroupField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/ReferenceField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/SequenceField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/VariantAnnotationField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/OntologyTermField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/Filter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FieldEnumeration$SchemaVal.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/SampleField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/AlignmentField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FragmentField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/DbxrefField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InnerShuffleRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicPositionPartitioner.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InnerTreeRegionJoinAndGroupByRight.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/AvroReadGroupGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicRegionPartitioner$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicRegionPartitioner.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InFormatterCompanion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenericGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/ADAMVCFOutputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/ParquetUnboundVariantDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VariantDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/DatasetBoundGenotypeDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VariantContextDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VariantContextDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/package.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/GenotypeDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/ParquetUnboundGenotypeDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/DatasetBoundVariantContextDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VCFInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VCFInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/RDDBoundVariantContextDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VariantDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/RDDBoundVariantDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/GenotypeDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/RDDBoundGenotypeDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/DatasetBoundVariantDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VCFOutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/DatasetBoundGenericGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicBroadcast.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InnerTreeRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/NarrowPeakOutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GFF3InFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/package.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GTFInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/FeatureDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/NarrowPeakInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/ParquetUnboundFeatureDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/RDDBoundFeatureDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/BEDOutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GFF3InFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/DatasetBoundCoverageDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GTFInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/BEDInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/CoverageDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/BEDInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/NarrowPeakInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/ParquetUnboundCoverageDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GFF3OutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/CoverageDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GTFOutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/DatasetBoundFeatureDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/FeatureDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/RDDBoundCoverageDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/RightOuterTreeRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InnerShuffleRegionJoinAndGroupByLeft.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/RightOuterShuffleRegionJoinAndGroupByLeft.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/ShuffleRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/AvroGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/DatasetBoundGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenericConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/LeftOuterShuffleRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/FullOuterShuffleRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/MultisampleAvroGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/SequenceDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/RDDBoundSliceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/package.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/DatasetBoundSequenceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/FASTAInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/ParquetUnboundSliceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/DatasetBoundSliceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/SliceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/SliceDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/FASTAInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/SequenceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/ParquetUnboundSequenceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/RDDBoundSequenceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/RDDBoundGenericGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/ReferencePartitioner.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/MultisampleGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/RightOuterTreeRegionJoinAndGroupByRight.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/VictimlessSortedIntervalPartitionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicPositionPartitioner$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/LeftOuterShuffleRegionJoinAndGroupByLeft.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/InstrumentedADAMBAMOutputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/InstrumentedADAMSAMOutputFormatHeaderLess.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMSAMOutputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMCRAMOutputFormatHeaderLess.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ReferencePositionPairSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ParquetUnboundAlignmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/InstrumentedADAMSAMOutputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMSAMOutputFormatHeaderLess.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ReadDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AlignmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMBAMOutputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/RDDBoundReadDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/DatasetBoundAlignmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/InstrumentedADAMBAMOutputFormatHeaderLess.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMBAMOutputFormatHeaderLess.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/DatasetBoundReadDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AnySAMOutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/QualityScoreBin$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ReadDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/SAMInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/InstrumentedADAMCRAMOutputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/SAMInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/BAMInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMCRAMOutputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/FASTQInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/FASTQInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AlignmentDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AnySAMInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/QualityScoreBin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/RDDBoundAlignmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/BAMInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/InstrumentedADAMCRAMOutputFormatHeaderLess.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AnySAMInFormatterCompanion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/SingleReadBucketSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/IncorrectMDTagException.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ParquetUnboundReadDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/SortedIntervalPartitionJoinWithVictims.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/ADAMSaveAnyArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/Tab5InFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/ParquetUnboundFragmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/FragmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/package.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/Tab6InFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/RDDBoundFragmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/Tab6InFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/InterleavedFASTQInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/Tab5InFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/FragmentDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/DatasetBoundFragmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/InterleavedFASTQInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicDatasetWithLineage.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rich/RichAlignment$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/instrumentation/package.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/instrumentation/Timers$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/smithwaterman/package.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/smithwaterman/SmithWaterman.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/smithwaterman/SmithWatermanConstantGapScoring.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/consensus/package.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/consensus/ConsensusGenerator.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/consensus/ConsensusGenerator$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferencePosition$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/OptionalReferenceOrdering.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/TagType$$TypeVal.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferenceRegion$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferencePositionSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/SequenceDictionary.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/SequenceRecord$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReadGroupDictionary.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferenceRegionSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/OptionalPositionOrdering$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/PositionOrdering$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/VariantContext.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/VariantContext$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/SequenceDictionary$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferenceOrdering.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferenceRegion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/SequenceRecord.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/OptionalRegionOrdering$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReadGroupDictionary$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/RegionOrdering$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferencePosition.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/VariantContextSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/package.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/InputStreamWithDecoder.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/AvroSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/ADAMKryoRegistrator.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/WritableSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/FastqRecordReader.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/SingleFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/InterleavedFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/class-use/FastqRecordReader.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/class-use/SingleFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/class-use/InterleavedFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/class-use/FastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/python/DataFrameConversionWrapper.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToVariantContextsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToAlignmentDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToSequenceDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToCoverageDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToVariantContextDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToReadDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToVariantContextsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToGenotypeDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToSliceDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToFeatureConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/JavaADAMContext$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToFeatureDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToVariantDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToVariantContextsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToFragmentDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/JavaADAMContext.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSlices.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformGenotypes$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformGenotypesArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFeaturesArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformAlignments$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformVariantsArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformGenotypes.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSequences$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformVariants$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountSliceKmers$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFragments$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformAlignmentsArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFragments.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSequencesArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformAlignments.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFragmentsArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/MergeShardsArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformVariants.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountSliceKmers.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSlicesArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountSliceKmersArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountReadKmers$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSequences.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFeatures.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountReadKmersArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSlices$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFeatures$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/repo/adam-assembly-spark2_2.11-0.30.0-SNAPSHOT-javadoc.jar longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/repo/adam-assembly-spark2_2.11-0.30.0-SNAPSHOT-sources.jar longer than 100 characters.
[INFO] Building zip: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-distribution/target/adam-distribution-spark2_2.11-0.30.0-SNAPSHOT-bin.zip
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO] 
[INFO] ADAM_2.11 .......................................... SUCCESS [  7.877 s]
[INFO] ADAM_2.11: Avro-to-Dataset codegen utils ........... SUCCESS [  4.461 s]
[INFO] ADAM_2.11: Core .................................... SUCCESS [01:24 min]
[INFO] ADAM_2.11: APIs for Java, Python ................... SUCCESS [  7.480 s]
[INFO] ADAM_2.11: CLI ..................................... SUCCESS [ 26.007 s]
[INFO] ADAM_2.11: Assembly ................................ SUCCESS [ 11.236 s]
[INFO] ADAM_2.11: Distribution ............................ SUCCESS [ 31.046 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESS
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 02:53 min
[INFO] Finished at: 2020-01-24T10:17:32-08:00
[INFO] Final Memory: 74M/1440M
[INFO] ------------------------------------------------------------------------

# make sure that the distribution package contains an assembly jar
# if no assembly jar is found, this will exit with code 1 and fail the build
tar tzvf adam-distribution/target/adam-distribution*-bin.tar.gz | \
    grep adam-assembly | \
    grep jar | \
    grep -v -e sources -e javadoc 
+ tar tzvf adam-distribution/target/adam-distribution-spark2_2.11-0.30.0-SNAPSHOT-bin.tar.gz
+ grep adam-assembly
+ grep jar
+ grep -v -e sources -e javadoc
-rw-r--r-- jenkins/jenkins 64252769 2020-01-24 10:17 adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/repo/adam-assembly-spark2_2.11-0.30.0-SNAPSHOT.jar

# we are done with maven, so clean up the maven temp dir
find ${ADAM_MVN_TMP_DIR}
+ find /tmp/adamTestMvnM5Ay7Lc
/tmp/adamTestMvnM5Ay7Lc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1295964639871552970.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite1295964639871552970.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1295964639871552970.adam/.part-00002-d564349a-cca3-4b8e-8dd7-91f35754d870-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1295964639871552970.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite1295964639871552970.adam/part-00002-d564349a-cca3-4b8e-8dd7-91f35754d870-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite1295964639871552970.adam/part-00001-d564349a-cca3-4b8e-8dd7-91f35754d870-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite1295964639871552970.adam/part-00000-d564349a-cca3-4b8e-8dd7-91f35754d870-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite1295964639871552970.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite1295964639871552970.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1295964639871552970.adam/.part-00000-d564349a-cca3-4b8e-8dd7-91f35754d870-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1295964639871552970.adam/.part-00001-d564349a-cca3-4b8e-8dd7-91f35754d870-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/3981238114642451827
/tmp/adamTestMvnM5Ay7Lc/3981238114642451827/out.cram_tail
/tmp/adamTestMvnM5Ay7Lc/3981238114642451827/out.cram_tail/.part-r-00003.cram.crc
/tmp/adamTestMvnM5Ay7Lc/3981238114642451827/out.cram_tail/.part-r-00001.cram.crc
/tmp/adamTestMvnM5Ay7Lc/3981238114642451827/out.cram_tail/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/3981238114642451827/out.cram_tail/.part-r-00000.cram.crc
/tmp/adamTestMvnM5Ay7Lc/3981238114642451827/out.cram_tail/part-r-00003.cram
/tmp/adamTestMvnM5Ay7Lc/3981238114642451827/out.cram_tail/part-r-00000.cram
/tmp/adamTestMvnM5Ay7Lc/3981238114642451827/out.cram_tail/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/3981238114642451827/out.cram_tail/part-r-00002.cram
/tmp/adamTestMvnM5Ay7Lc/3981238114642451827/out.cram_tail/part-r-00001.cram
/tmp/adamTestMvnM5Ay7Lc/3981238114642451827/out.cram_tail/.part-r-00002.cram.crc
/tmp/adamTestMvnM5Ay7Lc/3981238114642451827/.out.cram.crc
/tmp/adamTestMvnM5Ay7Lc/3981238114642451827/out.cram_head
/tmp/adamTestMvnM5Ay7Lc/3981238114642451827/.out.cram_head.crc
/tmp/adamTestMvnM5Ay7Lc/3981238114642451827/out.cram
/tmp/adamTestMvnM5Ay7Lc/9105348464069503115
/tmp/adamTestMvnM5Ay7Lc/9105348464069503115/.artificial.cram.crc
/tmp/adamTestMvnM5Ay7Lc/9105348464069503115/artificial.cram
/tmp/adamTestMvnM5Ay7Lc/TempSuite8801869228831268521.bed
/tmp/adamTestMvnM5Ay7Lc/TempSuite8801869228831268521.bed/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8801869228831268521.bed/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite8801869228831268521.bed/part-00000
/tmp/adamTestMvnM5Ay7Lc/TempSuite8801869228831268521.bed/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8892315696139307721
/tmp/adamTestMvnM5Ay7Lc/TempSuite4948110984271972035.fa
/tmp/adamTestMvnM5Ay7Lc/TempSuite4948110984271972035.fa/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4948110984271972035.fa/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite4948110984271972035.fa/part-00000
/tmp/adamTestMvnM5Ay7Lc/TempSuite4948110984271972035.fa/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/artificial.cram1361924316199068500.cram
/tmp/adamTestMvnM5Ay7Lc/TempSuite8783624855377370512
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite7031376159916885636.fasta
/tmp/adamTestMvnM5Ay7Lc/TempSuite1984296910567305598.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite1984296910567305598.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite1984296910567305598.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1984296910567305598.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1984296910567305598.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite1984296910567305598.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite1984296910567305598.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite1984296910567305598.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite1984296910567305598.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1984296910567305598.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1984296910567305598.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite1984296910567305598.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite1984296910567305598.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1984296910567305598.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1984296910567305598.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4438668502601906410
/tmp/adamTestMvnM5Ay7Lc/TempSuite1831179012881806730
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite4605715262143837070.adam
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite4605715262143837070.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite4605715262143837070.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite4605715262143837070.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite4605715262143837070.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite4605715262143837070.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite4605715262143837070.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite4605715262143837070.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite4605715262143837070.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite4605715262143837070.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite4605715262143837070.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite4605715262143837070.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite4605715262143837070.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite4605715262143837070.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite4605715262143837070.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite4605715262143837070.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite4605715262143837070.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3215794080556484301
/tmp/adamTestMvnM5Ay7Lc/5298400046119690283
/tmp/adamTestMvnM5Ay7Lc/5298400046119690283/unordered.sam
/tmp/adamTestMvnM5Ay7Lc/5298400046119690283/.unordered.sam.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite351320194923415450
/tmp/adamTestMvnM5Ay7Lc/random.vcf2777642624266488140.vcf
/tmp/adamTestMvnM5Ay7Lc/TempSuite405306005631624545_2.fq
/tmp/adamTestMvnM5Ay7Lc/TempSuite405306005631624545_2.fq/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite405306005631624545_2.fq/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite405306005631624545_2.fq/part-00000
/tmp/adamTestMvnM5Ay7Lc/TempSuite405306005631624545_2.fq/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite345471085818943053.sam
/tmp/adamTestMvnM5Ay7Lc/TempSuite345471085818943053.sam/part-r-00000.sam
/tmp/adamTestMvnM5Ay7Lc/TempSuite345471085818943053.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite345471085818943053.sam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite345471085818943053.sam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3215794080556484301.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite3215794080556484301.adam/part-00002-9c6bacd2-fafa-45b6-9e28-7dbc281a65f4-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite3215794080556484301.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3215794080556484301.adam/part-00000-9c6bacd2-fafa-45b6-9e28-7dbc281a65f4-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite3215794080556484301.adam/.part-00000-9c6bacd2-fafa-45b6-9e28-7dbc281a65f4-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3215794080556484301.adam/.part-00001-9c6bacd2-fafa-45b6-9e28-7dbc281a65f4-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3215794080556484301.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite3215794080556484301.adam/part-00001-9c6bacd2-fafa-45b6-9e28-7dbc281a65f4-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite3215794080556484301.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite3215794080556484301.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite3215794080556484301.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3215794080556484301.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3215794080556484301.adam/.part-00002-9c6bacd2-fafa-45b6-9e28-7dbc281a65f4-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7805064312028989794
/tmp/adamTestMvnM5Ay7Lc/random.vcf5856318138305988169.vcf
/tmp/adamTestMvnM5Ay7Lc/TempSuite2215643175505635642.bed
/tmp/adamTestMvnM5Ay7Lc/TempSuite2215643175505635642.bed/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2215643175505635642.bed/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite2215643175505635642.bed/part-00000
/tmp/adamTestMvnM5Ay7Lc/TempSuite2215643175505635642.bed/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1349721119003288591.sam
/tmp/adamTestMvnM5Ay7Lc/TempSuite1349721119003288591.sam/part-r-00000.sam
/tmp/adamTestMvnM5Ay7Lc/TempSuite1349721119003288591.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1349721119003288591.sam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite1349721119003288591.sam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4539411314546626112.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite4539411314546626112.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4539411314546626112.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite4539411314546626112.adam/_partitionedByStartPos
/tmp/adamTestMvnM5Ay7Lc/TempSuite4539411314546626112.adam/referenceName=13
/tmp/adamTestMvnM5Ay7Lc/TempSuite4539411314546626112.adam/referenceName=13/positionBin=0
/tmp/adamTestMvnM5Ay7Lc/TempSuite4539411314546626112.adam/referenceName=13/positionBin=0/part-00000-0810c3c5-bff5-471f-bee4-aea6a464476d.c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite4539411314546626112.adam/referenceName=13/positionBin=0/.part-00000-0810c3c5-bff5-471f-bee4-aea6a464476d.c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4539411314546626112.adam/referenceName=1
/tmp/adamTestMvnM5Ay7Lc/TempSuite4539411314546626112.adam/referenceName=1/positionBin=0
/tmp/adamTestMvnM5Ay7Lc/TempSuite4539411314546626112.adam/referenceName=1/positionBin=0/part-00000-0810c3c5-bff5-471f-bee4-aea6a464476d.c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite4539411314546626112.adam/referenceName=1/positionBin=0/.part-00000-0810c3c5-bff5-471f-bee4-aea6a464476d.c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4539411314546626112.adam/._partitionedByStartPos.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4539411314546626112.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite4539411314546626112.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite4539411314546626112.adam/referenceName=2
/tmp/adamTestMvnM5Ay7Lc/TempSuite4539411314546626112.adam/referenceName=2/positionBin=0
/tmp/adamTestMvnM5Ay7Lc/TempSuite4539411314546626112.adam/referenceName=2/positionBin=0/part-00000-0810c3c5-bff5-471f-bee4-aea6a464476d.c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite4539411314546626112.adam/referenceName=2/positionBin=0/.part-00000-0810c3c5-bff5-471f-bee4-aea6a464476d.c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4539411314546626112.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4539411314546626112.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4539411314546626112.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4539411314546626112.adam/_header
/tmp/adamTestMvnM5Ay7Lc/.FeatureDatasetFunctionsSuite1621050859479025177.bed.crc
/tmp/adamTestMvnM5Ay7Lc/small.sam3441840753451155548.sam
/tmp/adamTestMvnM5Ay7Lc/sorted-variants.vcf7222912378020804929.vcf
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite1621050859479025177
/tmp/adamTestMvnM5Ay7Lc/TempSuite1975736592146812719.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite1975736592146812719.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite1975736592146812719.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1975736592146812719.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite1975736592146812719.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite1975736592146812719.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1975736592146812719.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1975736592146812719.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite1975736592146812719.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite1975736592146812719.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1975736592146812719.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite8340252989276576791
/tmp/adamTestMvnM5Ay7Lc/TempSuite106465674324982569
/tmp/adamTestMvnM5Ay7Lc/TempSuite4972990877115546692.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite4972990877115546692.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite4972990877115546692.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite4972990877115546692.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4972990877115546692.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4972990877115546692.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite4972990877115546692.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite4972990877115546692.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4972990877115546692.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite4972990877115546692.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4972990877115546692.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite4972990877115546692.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4972990877115546692.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite4972990877115546692.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite4972990877115546692.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4972990877115546692.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite4972990877115546692.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4972990877115546692.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4972990877115546692.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite8786971494805091213.gtf
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite8786971494805091213.gtf/.part-00003.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite8786971494805091213.gtf/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite8786971494805091213.gtf/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite8786971494805091213.gtf/part-00003
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite8786971494805091213.gtf/part-00000
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite8786971494805091213.gtf/part-00002
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite8786971494805091213.gtf/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite8786971494805091213.gtf/.part-00002.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite8786971494805091213.gtf/part-00001
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite8786971494805091213.gtf/.part-00001.crc
/tmp/adamTestMvnM5Ay7Lc/4126810352166983326
/tmp/adamTestMvnM5Ay7Lc/4126810352166983326/predicate.3.adam
/tmp/adamTestMvnM5Ay7Lc/4126810352166983326/predicate.3.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/4126810352166983326/predicate.3.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/4126810352166983326/predicate.3.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/4126810352166983326/predicate.3.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/4126810352166983326/predicate.3.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/4126810352166983326/predicate.3.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/4126810352166983326/predicate.3.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/4126810352166983326/predicate.3.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/4126810352166983326/predicate.3.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/4126810352166983326/predicate.3.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/4126810352166983326/predicate.3.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/4126810352166983326/predicate.3.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/4126810352166983326/predicate.3.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/4126810352166983326/predicate.3.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite141309376412004027
/tmp/adamTestMvnM5Ay7Lc/TempSuite1777339963666905306.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite1777339963666905306.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1777339963666905306.adam/part-00000-58882ea4-5120-47b9-bbd3-284b6eae7ce8-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite1777339963666905306.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite1777339963666905306.adam/.part-00000-58882ea4-5120-47b9-bbd3-284b6eae7ce8-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1777339963666905306.adam/.part-00003-58882ea4-5120-47b9-bbd3-284b6eae7ce8-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1777339963666905306.adam/.part-00005-58882ea4-5120-47b9-bbd3-284b6eae7ce8-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1777339963666905306.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite1777339963666905306.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite1777339963666905306.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1777339963666905306.adam/part-00005-58882ea4-5120-47b9-bbd3-284b6eae7ce8-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite1777339963666905306.adam/part-00003-58882ea4-5120-47b9-bbd3-284b6eae7ce8-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite1777339963666905306.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite558266321131835935.bed
/tmp/adamTestMvnM5Ay7Lc/TempSuite558266321131835935.bed/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite558266321131835935.bed/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite558266321131835935.bed/part-00000
/tmp/adamTestMvnM5Ay7Lc/TempSuite558266321131835935.bed/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/small.vcf2070279906215522216.vcf
/tmp/adamTestMvnM5Ay7Lc/noqual6822235770252321763
/tmp/adamTestMvnM5Ay7Lc/noqual6822235770252321763/noqualB.fastq
/tmp/adamTestMvnM5Ay7Lc/noqual6822235770252321763/noqualB.fastq/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/noqual6822235770252321763/noqualB.fastq/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/noqual6822235770252321763/noqualB.fastq/part-00000
/tmp/adamTestMvnM5Ay7Lc/noqual6822235770252321763/noqualB.fastq/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/noqual6822235770252321763/noqualA.sam
/tmp/adamTestMvnM5Ay7Lc/noqual6822235770252321763/noqualA.sam/part-r-00000.sam
/tmp/adamTestMvnM5Ay7Lc/noqual6822235770252321763/noqualA.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnM5Ay7Lc/noqual6822235770252321763/noqualA.sam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/noqual6822235770252321763/noqualA.sam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6903240715451921774.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite6903240715451921774.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite6903240715451921774.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6903240715451921774.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite6903240715451921774.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite6903240715451921774.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6903240715451921774.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6903240715451921774.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite6903240715451921774.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite6903240715451921774.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6903240715451921774.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7496906236205992750
/tmp/adamTestMvnM5Ay7Lc/7026270461253027903
/tmp/adamTestMvnM5Ay7Lc/7026270461253027903/.sorted-variants.lex.vcf.crc
/tmp/adamTestMvnM5Ay7Lc/7026270461253027903/sorted-variants.lex.vcf
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite700470750898106217
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite5400902114284432421.fasta
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite5400902114284432421.fasta/.part-00003.crc
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite5400902114284432421.fasta/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite5400902114284432421.fasta/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite5400902114284432421.fasta/part-00003
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite5400902114284432421.fasta/part-00000
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite5400902114284432421.fasta/part-00002
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite5400902114284432421.fasta/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite5400902114284432421.fasta/.part-00002.crc
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite5400902114284432421.fasta/part-00001
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite5400902114284432421.fasta/.part-00001.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2653624554206043328
/tmp/adamTestMvnM5Ay7Lc/.SliceDatasetSuite4377169018460607681.fasta.crc
/tmp/adamTestMvnM5Ay7Lc/.FeatureDatasetFunctionsSuite6750164447482301740.gtf.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite1905285286918348897.interval_list
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite1905285286918348897.interval_list/.part-00003.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite1905285286918348897.interval_list/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite1905285286918348897.interval_list/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite1905285286918348897.interval_list/part-00003
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite1905285286918348897.interval_list/part-00000
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite1905285286918348897.interval_list/part-00002
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite1905285286918348897.interval_list/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite1905285286918348897.interval_list/.part-00002.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite1905285286918348897.interval_list/part-00001
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite1905285286918348897.interval_list/.part-00001.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7010561168683395531.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite7010561168683395531.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite7010561168683395531.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite7010561168683395531.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7010561168683395531.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7010561168683395531.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite7010561168683395531.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite7010561168683395531.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7010561168683395531.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite7010561168683395531.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7010561168683395531.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite7010561168683395531.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7010561168683395531.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite7010561168683395531.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7010561168683395531.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite7010561168683395531.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7010561168683395531.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7010561168683395531.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7010561168683395531.adam/_header
/tmp/adamTestMvnM5Ay7Lc/TempSuite7442877020124325984
/tmp/adamTestMvnM5Ay7Lc/TempSuite3004542067688292890.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite3004542067688292890.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite3004542067688292890.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite3004542067688292890.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3004542067688292890.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3004542067688292890.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite3004542067688292890.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite3004542067688292890.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3004542067688292890.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite3004542067688292890.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3004542067688292890.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite3004542067688292890.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3004542067688292890.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite3004542067688292890.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3004542067688292890.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite3004542067688292890.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3004542067688292890.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite935175502406875727
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite2105734354008517232.interval_list
/tmp/adamTestMvnM5Ay7Lc/unsorted.sam4878544882634202916.sam
/tmp/adamTestMvnM5Ay7Lc/TempSuite8782693449685288538.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite8782693449685288538.adam/.part-00001-d2b477e9-08a1-4ce4-a08a-96c3376ca04a-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8782693449685288538.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8782693449685288538.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8782693449685288538.adam/.part-00002-d2b477e9-08a1-4ce4-a08a-96c3376ca04a-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8782693449685288538.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite8782693449685288538.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite8782693449685288538.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite8782693449685288538.adam/part-00001-d2b477e9-08a1-4ce4-a08a-96c3376ca04a-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite8782693449685288538.adam/part-00000-d2b477e9-08a1-4ce4-a08a-96c3376ca04a-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite8782693449685288538.adam/.part-00000-d2b477e9-08a1-4ce4-a08a-96c3376ca04a-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8782693449685288538.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite8782693449685288538.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8782693449685288538.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8782693449685288538.adam/part-00002-d2b477e9-08a1-4ce4-a08a-96c3376ca04a-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5221922537114433080.interval_list
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5221922537114433080.interval_list/.part-00003.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5221922537114433080.interval_list/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5221922537114433080.interval_list/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5221922537114433080.interval_list/part-00003
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5221922537114433080.interval_list/part-00000
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5221922537114433080.interval_list/part-00002
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5221922537114433080.interval_list/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5221922537114433080.interval_list/.part-00002.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5221922537114433080.interval_list/part-00001
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5221922537114433080.interval_list/.part-00001.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6773680373375942765.sam
/tmp/adamTestMvnM5Ay7Lc/TempSuite2637436796587053335.fq
/tmp/adamTestMvnM5Ay7Lc/TempSuite2637436796587053335.fq/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2637436796587053335.fq/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite2637436796587053335.fq/part-00000
/tmp/adamTestMvnM5Ay7Lc/TempSuite2637436796587053335.fq/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/random.vcf8419323755876151056.vcf
/tmp/adamTestMvnM5Ay7Lc/2421574619958550401
/tmp/adamTestMvnM5Ay7Lc/2421574619958550401/.small.vcf.bgz.crc
/tmp/adamTestMvnM5Ay7Lc/2421574619958550401/small.vcf.bgz
/tmp/adamTestMvnM5Ay7Lc/1579888714289-0
/tmp/adamTestMvnM5Ay7Lc/1579888714289-0/bamReads.adam
/tmp/adamTestMvnM5Ay7Lc/1579888714289-0/bamReads.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/1579888714289-0/bamReads.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/1579888714289-0/bamReads.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/1579888714289-0/bamReads.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/1579888714289-0/bamReads.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/1579888714289-0/bamReads.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/1579888714289-0/bamReads.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/1579888714289-0/bamReads.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/1579888714289-0/bamReads.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/1579888714289-0/bamReads.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/1579888714289-0/bamReads.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/1579888714289-0/bamReads.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/1579888714289-0/bamReads.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/1579888714289-0/bamReads.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite565471564639021649
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite5177602475816421109.fasta
/tmp/adamTestMvnM5Ay7Lc/.FeatureDatasetFunctionsSuite1055523111100513593.gff3.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3051245307399656503
/tmp/adamTestMvnM5Ay7Lc/TempSuite7465817188099677293.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite7465817188099677293.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite7465817188099677293.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite7465817188099677293.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7465817188099677293.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7465817188099677293.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite7465817188099677293.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite7465817188099677293.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7465817188099677293.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite7465817188099677293.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7465817188099677293.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite7465817188099677293.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7465817188099677293.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite7465817188099677293.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite7465817188099677293.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7465817188099677293.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite7465817188099677293.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7465817188099677293.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7465817188099677293.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7465817188099677293.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7465817188099677293.adam/_header
/tmp/adamTestMvnM5Ay7Lc/TempSuite1563111023861323816
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5988087826705722706.narrowPeak
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5988087826705722706.narrowPeak/.part-00003.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5988087826705722706.narrowPeak/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5988087826705722706.narrowPeak/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5988087826705722706.narrowPeak/part-00003
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5988087826705722706.narrowPeak/part-00000
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5988087826705722706.narrowPeak/part-00002
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5988087826705722706.narrowPeak/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5988087826705722706.narrowPeak/.part-00002.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5988087826705722706.narrowPeak/part-00001
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5988087826705722706.narrowPeak/.part-00001.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6951326749956314914.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite6951326749956314914.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite6951326749956314914.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6951326749956314914.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite6951326749956314914.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite6951326749956314914.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6951326749956314914.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6951326749956314914.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite6951326749956314914.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite6951326749956314914.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite6951326749956314914.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6951326749956314914.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6951326749956314914.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6951326749956314914.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6951326749956314914.adam/_header
/tmp/adamTestMvnM5Ay7Lc/TempSuite5025230307290699871.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite5025230307290699871.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite5025230307290699871.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5025230307290699871.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite5025230307290699871.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite5025230307290699871.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5025230307290699871.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5025230307290699871.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite5025230307290699871.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite5025230307290699871.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5025230307290699871.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5025230307290699871.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5025230307290699871.adam/_header
/tmp/adamTestMvnM5Ay7Lc/TempSuite8818760712842413206.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite8818760712842413206.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite8818760712842413206.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8818760712842413206.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite8818760712842413206.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite8818760712842413206.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8818760712842413206.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8818760712842413206.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite8818760712842413206.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite8818760712842413206.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite8818760712842413206.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8818760712842413206.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8818760712842413206.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8818760712842413206.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8818760712842413206.adam/_header
/tmp/adamTestMvnM5Ay7Lc/reads128131034040071667765
/tmp/adamTestMvnM5Ay7Lc/reads128131034040071667765/reads12.sam
/tmp/adamTestMvnM5Ay7Lc/reads128131034040071667765/reads12.sam/part-r-00000.sam
/tmp/adamTestMvnM5Ay7Lc/reads128131034040071667765/reads12.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnM5Ay7Lc/reads128131034040071667765/reads12.sam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/reads128131034040071667765/reads12.sam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7733318715654690161.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite7733318715654690161.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite7733318715654690161.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7733318715654690161.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite7733318715654690161.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite7733318715654690161.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7733318715654690161.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7733318715654690161.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite7733318715654690161.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite7733318715654690161.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7733318715654690161.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7733318715654690161.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7733318715654690161.adam/_header
/tmp/adamTestMvnM5Ay7Lc/random.vcf2555631185689340093.vcf
/tmp/adamTestMvnM5Ay7Lc/TempSuite3118772697266254194
/tmp/adamTestMvnM5Ay7Lc/TempSuite7472825535108840323.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite7472825535108840323.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7472825535108840323.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite7472825535108840323.adam/_partitionedByStartPos
/tmp/adamTestMvnM5Ay7Lc/TempSuite7472825535108840323.adam/referenceName=13
/tmp/adamTestMvnM5Ay7Lc/TempSuite7472825535108840323.adam/referenceName=13/positionBin=0
/tmp/adamTestMvnM5Ay7Lc/TempSuite7472825535108840323.adam/referenceName=13/positionBin=0/.part-00000-f4414708-f94f-4aa1-9a3e-cd1581852b21.c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7472825535108840323.adam/referenceName=13/positionBin=0/part-00000-f4414708-f94f-4aa1-9a3e-cd1581852b21.c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite7472825535108840323.adam/referenceName=1
/tmp/adamTestMvnM5Ay7Lc/TempSuite7472825535108840323.adam/referenceName=1/positionBin=0
/tmp/adamTestMvnM5Ay7Lc/TempSuite7472825535108840323.adam/referenceName=1/positionBin=0/.part-00000-f4414708-f94f-4aa1-9a3e-cd1581852b21.c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7472825535108840323.adam/referenceName=1/positionBin=0/part-00000-f4414708-f94f-4aa1-9a3e-cd1581852b21.c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite7472825535108840323.adam/._partitionedByStartPos.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7472825535108840323.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite7472825535108840323.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite7472825535108840323.adam/referenceName=2
/tmp/adamTestMvnM5Ay7Lc/TempSuite7472825535108840323.adam/referenceName=2/positionBin=0
/tmp/adamTestMvnM5Ay7Lc/TempSuite7472825535108840323.adam/referenceName=2/positionBin=0/.part-00000-f4414708-f94f-4aa1-9a3e-cd1581852b21.c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7472825535108840323.adam/referenceName=2/positionBin=0/part-00000-f4414708-f94f-4aa1-9a3e-cd1581852b21.c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite7472825535108840323.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7472825535108840323.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7472825535108840323.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7472825535108840323.adam/_header
/tmp/adamTestMvnM5Ay7Lc/TempSuite8483636199895596447
/tmp/adamTestMvnM5Ay7Lc/TempSuite5169752932505084282.fa
/tmp/adamTestMvnM5Ay7Lc/TempSuite5169752932505084282.fa/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5169752932505084282.fa/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite5169752932505084282.fa/part-00000
/tmp/adamTestMvnM5Ay7Lc/TempSuite5169752932505084282.fa/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6151306431859808886
/tmp/adamTestMvnM5Ay7Lc/TempSuite1951649764281460423.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite1951649764281460423.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite1951649764281460423.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1951649764281460423.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite1951649764281460423.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite1951649764281460423.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1951649764281460423.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1951649764281460423.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite1951649764281460423.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite1951649764281460423.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite1951649764281460423.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1951649764281460423.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1951649764281460423.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1951649764281460423.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1951649764281460423.adam/_header
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5951926402800048191.interval_list
/tmp/adamTestMvnM5Ay7Lc/TempSuite6333209392584153756.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite6333209392584153756.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite6333209392584153756.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6333209392584153756.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite6333209392584153756.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite6333209392584153756.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6333209392584153756.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6333209392584153756.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite6333209392584153756.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite6333209392584153756.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite6333209392584153756.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6333209392584153756.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6333209392584153756.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6333209392584153756.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6333209392584153756.adam/_header
/tmp/adamTestMvnM5Ay7Lc/TempSuite5312561044086927897.bed
/tmp/adamTestMvnM5Ay7Lc/TempSuite5312561044086927897.bed/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5312561044086927897.bed/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite5312561044086927897.bed/part-00000
/tmp/adamTestMvnM5Ay7Lc/TempSuite5312561044086927897.bed/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1342749965267450893.bed
/tmp/adamTestMvnM5Ay7Lc/TempSuite1342749965267450893.bed/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1342749965267450893.bed/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite1342749965267450893.bed/part-00000
/tmp/adamTestMvnM5Ay7Lc/TempSuite1342749965267450893.bed/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7698183775510390509
/tmp/adamTestMvnM5Ay7Lc/TempSuite2190396881965008272.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite2190396881965008272.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite2190396881965008272.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite2190396881965008272.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2190396881965008272.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2190396881965008272.adam/part-r-00004.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite2190396881965008272.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite2190396881965008272.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite2190396881965008272.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2190396881965008272.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite2190396881965008272.adam/.part-r-00004.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2190396881965008272.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2190396881965008272.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite2190396881965008272.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2190396881965008272.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite2190396881965008272.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite2190396881965008272.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2190396881965008272.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite2190396881965008272.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2190396881965008272.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2190396881965008272.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/1790854389914853945
/tmp/adamTestMvnM5Ay7Lc/1790854389914853945/.sorted.lex.vcf.crc
/tmp/adamTestMvnM5Ay7Lc/1790854389914853945/sorted.lex.vcf
/tmp/adamTestMvnM5Ay7Lc/TempSuite6633288712505299920
/tmp/adamTestMvnM5Ay7Lc/.FeatureDatasetFunctionsSuite4588982584597557952.bed.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite714351877035361929.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite714351877035361929.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite714351877035361929.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite714351877035361929.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite714351877035361929.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite714351877035361929.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite714351877035361929.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite714351877035361929.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite714351877035361929.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite714351877035361929.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite714351877035361929.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite714351877035361929.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite714351877035361929.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite714351877035361929.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite714351877035361929.adam/_header
/tmp/adamTestMvnM5Ay7Lc/TempSuite8524852096117088884.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite8524852096117088884.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite8524852096117088884.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8524852096117088884.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8524852096117088884.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite8524852096117088884.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite8524852096117088884.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite8524852096117088884.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite8524852096117088884.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8524852096117088884.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8524852096117088884.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite8524852096117088884.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite8524852096117088884.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8524852096117088884.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8524852096117088884.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/3841831215858590546
/tmp/adamTestMvnM5Ay7Lc/3841831215858590546/variants.adam
/tmp/adamTestMvnM5Ay7Lc/3841831215858590546/variants.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/3841831215858590546/variants.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/3841831215858590546/variants.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/3841831215858590546/variants.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/3841831215858590546/variants.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/3841831215858590546/variants.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/3841831215858590546/variants.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/3841831215858590546/variants.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/3841831215858590546/variants.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/3841831215858590546/variants.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/3841831215858590546/variants.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/3841831215858590546/variants.adam/_header
/tmp/adamTestMvnM5Ay7Lc/TempSuite7599681573492140652.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite7599681573492140652.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7599681573492140652.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7599681573492140652.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite7599681573492140652.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite7599681573492140652.adam/part-00000-f619770b-00b0-488a-b2c7-63943595c107-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite7599681573492140652.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite7599681573492140652.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite7599681573492140652.adam/.part-00000-f619770b-00b0-488a-b2c7-63943595c107-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7599681573492140652.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7599681573492140652.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8146610346393752534
/tmp/adamTestMvnM5Ay7Lc/TempSuite978099787513482860
/tmp/adamTestMvnM5Ay7Lc/TempSuite4812694812976344375_1.fq
/tmp/adamTestMvnM5Ay7Lc/TempSuite4812694812976344375_1.fq/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4812694812976344375_1.fq/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite4812694812976344375_1.fq/part-00000
/tmp/adamTestMvnM5Ay7Lc/TempSuite4812694812976344375_1.fq/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/5827931472328849047
/tmp/adamTestMvnM5Ay7Lc/5827931472328849047/sorted.sam
/tmp/adamTestMvnM5Ay7Lc/5827931472328849047/.sorted.sam.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8432420323600056328
/tmp/adamTestMvnM5Ay7Lc/TempSuite3019137215343141869
/tmp/adamTestMvnM5Ay7Lc/3919746686091190108
/tmp/adamTestMvnM5Ay7Lc/3919746686091190108/genotypes.adam
/tmp/adamTestMvnM5Ay7Lc/3919746686091190108/genotypes.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/3919746686091190108/genotypes.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/3919746686091190108/genotypes.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/3919746686091190108/genotypes.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/3919746686091190108/genotypes.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/3919746686091190108/genotypes.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/3919746686091190108/genotypes.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/3919746686091190108/genotypes.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/3919746686091190108/genotypes.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/3919746686091190108/genotypes.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/3919746686091190108/genotypes.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/3919746686091190108/genotypes.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/3919746686091190108/genotypes.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/3919746686091190108/genotypes.adam/_header
/tmp/adamTestMvnM5Ay7Lc/javaAC2984824359297437408
/tmp/adamTestMvnM5Ay7Lc/javaAC2984824359297437408/testRdd.genotype.adam
/tmp/adamTestMvnM5Ay7Lc/javaAC2984824359297437408/testRdd.genotype.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/javaAC2984824359297437408/testRdd.genotype.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC2984824359297437408/testRdd.genotype.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/javaAC2984824359297437408/testRdd.genotype.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/javaAC2984824359297437408/testRdd.genotype.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC2984824359297437408/testRdd.genotype.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC2984824359297437408/testRdd.genotype.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/javaAC2984824359297437408/testRdd.genotype.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/javaAC2984824359297437408/testRdd.genotype.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/javaAC2984824359297437408/testRdd.genotype.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC2984824359297437408/testRdd.genotype.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC2984824359297437408/testRdd.genotype.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC2984824359297437408/testRdd.genotype.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC2984824359297437408/testRdd.genotype.adam/_header
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite5268925974122526359
/tmp/adamTestMvnM5Ay7Lc/TempSuite2215643175505635642
/tmp/adamTestMvnM5Ay7Lc/TempSuite6064850638995818306.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite6064850638995818306.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite6064850638995818306.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6064850638995818306.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite6064850638995818306.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite6064850638995818306.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6064850638995818306.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6064850638995818306.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite6064850638995818306.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite6064850638995818306.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6064850638995818306.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8323025312187332563
/tmp/adamTestMvnM5Ay7Lc/TempSuite8645710995730158680.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite8645710995730158680.adam/.part-00002-51ad2deb-3a8e-4712-aab5-a0feb3321560-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8645710995730158680.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8645710995730158680.adam/.part-00000-51ad2deb-3a8e-4712-aab5-a0feb3321560-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8645710995730158680.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite8645710995730158680.adam/part-00001-51ad2deb-3a8e-4712-aab5-a0feb3321560-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite8645710995730158680.adam/part-00000-51ad2deb-3a8e-4712-aab5-a0feb3321560-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite8645710995730158680.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite8645710995730158680.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite8645710995730158680.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8645710995730158680.adam/.part-00001-51ad2deb-3a8e-4712-aab5-a0feb3321560-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8645710995730158680.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8645710995730158680.adam/part-00002-51ad2deb-3a8e-4712-aab5-a0feb3321560-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/.TempSuite977285341228744119.sam.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite106465674324982569.vcf
/tmp/adamTestMvnM5Ay7Lc/TempSuite106465674324982569.vcf/.part-r-00000.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite106465674324982569.vcf/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite106465674324982569.vcf/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite106465674324982569.vcf/part-r-00000
/tmp/adamTestMvnM5Ay7Lc/TempSuite4438668502601906410.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite4438668502601906410.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4438668502601906410.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite4438668502601906410.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite4438668502601906410.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite4438668502601906410.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4438668502601906410.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4438668502601906410.adam/.part-00000-5edc5c4e-9c1d-4edf-afaf-8e09149c8e36-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4438668502601906410.adam/part-00000-5edc5c4e-9c1d-4edf-afaf-8e09149c8e36-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite4438668502601906410.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4438668502601906410.adam/_header
/tmp/adamTestMvnM5Ay7Lc/TempSuite1679108129960743520
/tmp/adamTestMvnM5Ay7Lc/TempSuite5615064392449620474
/tmp/adamTestMvnM5Ay7Lc/TempSuite2283500044302133057.fq
/tmp/adamTestMvnM5Ay7Lc/TempSuite2283500044302133057.fq/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2283500044302133057.fq/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite2283500044302133057.fq/part-00000
/tmp/adamTestMvnM5Ay7Lc/TempSuite2283500044302133057.fq/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6056149123789509464.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite6056149123789509464.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6056149123789509464.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6056149123789509464.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite6056149123789509464.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite6056149123789509464.adam/part-00000-c3f4429c-1557-4542-9771-f34ddcc6c41f-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite6056149123789509464.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite6056149123789509464.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite6056149123789509464.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6056149123789509464.adam/.part-00000-c3f4429c-1557-4542-9771-f34ddcc6c41f-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6056149123789509464.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3915063193728399385
/tmp/adamTestMvnM5Ay7Lc/5316103941745513711
/tmp/adamTestMvnM5Ay7Lc/5316103941745513711/ordered.sam
/tmp/adamTestMvnM5Ay7Lc/5316103941745513711/.ordered.sam.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4972990877115546692
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite8114593683676855557
/tmp/adamTestMvnM5Ay7Lc/TempSuite1312307841970106758
/tmp/adamTestMvnM5Ay7Lc/TempSuite7503722279959419250.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite7503722279959419250.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7503722279959419250.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7503722279959419250.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite7503722279959419250.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite7503722279959419250.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite7503722279959419250.adam/.part-00000-c14b96e0-e2d2-464d-b1db-45fbbeafc245-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7503722279959419250.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite7503722279959419250.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7503722279959419250.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7503722279959419250.adam/part-00000-c14b96e0-e2d2-464d-b1db-45fbbeafc245-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite9070090541799288153.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite9070090541799288153.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite9070090541799288153.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite9070090541799288153.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite9070090541799288153.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite9070090541799288153.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite9070090541799288153.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite9070090541799288153.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite9070090541799288153.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite9070090541799288153.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite9070090541799288153.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite9070090541799288153.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite9070090541799288153.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite9070090541799288153.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite9070090541799288153.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2320233931440335499
/tmp/adamTestMvnM5Ay7Lc/.ReadDatasetSuite6662137159121725016.fastq.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite516034957941730445.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite516034957941730445.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite516034957941730445.adam/part-00002-72fe2ee9-b5b5-4f07-8f9d-88dfd9752f85-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite516034957941730445.adam/part-00000-72fe2ee9-b5b5-4f07-8f9d-88dfd9752f85-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite516034957941730445.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite516034957941730445.adam/part-00001-72fe2ee9-b5b5-4f07-8f9d-88dfd9752f85-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite516034957941730445.adam/.part-00001-72fe2ee9-b5b5-4f07-8f9d-88dfd9752f85-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite516034957941730445.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite516034957941730445.adam/.part-00002-72fe2ee9-b5b5-4f07-8f9d-88dfd9752f85-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite516034957941730445.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite516034957941730445.adam/.part-00000-72fe2ee9-b5b5-4f07-8f9d-88dfd9752f85-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5615980040733623933
/tmp/adamTestMvnM5Ay7Lc/TempSuite4302190333625564561.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite4302190333625564561.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite4302190333625564561.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4302190333625564561.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite4302190333625564561.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite4302190333625564561.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4302190333625564561.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4302190333625564561.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite4302190333625564561.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite4302190333625564561.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4302190333625564561.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4302190333625564561.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4302190333625564561.adam/_header
/tmp/adamTestMvnM5Ay7Lc/TempSuite1773196825715022289.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite1773196825715022289.adam/.part-00000-2c28d9dc-5966-48c9-b12e-7f0ac86b83ea-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1773196825715022289.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1773196825715022289.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1773196825715022289.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite1773196825715022289.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite1773196825715022289.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite1773196825715022289.adam/part-00000-2c28d9dc-5966-48c9-b12e-7f0ac86b83ea-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite1773196825715022289.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite1773196825715022289.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1773196825715022289.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite190915648442210845
/tmp/adamTestMvnM5Ay7Lc/reads127359800359038846633
/tmp/adamTestMvnM5Ay7Lc/reads127359800359038846633/reads12.sam
/tmp/adamTestMvnM5Ay7Lc/reads127359800359038846633/reads12.sam/part-r-00000.sam
/tmp/adamTestMvnM5Ay7Lc/reads127359800359038846633/reads12.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnM5Ay7Lc/reads127359800359038846633/reads12.sam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/reads127359800359038846633/reads12.sam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4030049068332705543.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite4030049068332705543.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4030049068332705543.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4030049068332705543.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite4030049068332705543.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite4030049068332705543.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite4030049068332705543.adam/_partitionedByStartPos
/tmp/adamTestMvnM5Ay7Lc/TempSuite4030049068332705543.adam/referenceName=1
/tmp/adamTestMvnM5Ay7Lc/TempSuite4030049068332705543.adam/referenceName=1/positionBin=26
/tmp/adamTestMvnM5Ay7Lc/TempSuite4030049068332705543.adam/referenceName=1/positionBin=26/part-00000-13cb4a5a-8284-4998-b91f-0663bd4a72dc.c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite4030049068332705543.adam/referenceName=1/positionBin=26/.part-00000-13cb4a5a-8284-4998-b91f-0663bd4a72dc.c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4030049068332705543.adam/referenceName=1/positionBin=240
/tmp/adamTestMvnM5Ay7Lc/TempSuite4030049068332705543.adam/referenceName=1/positionBin=240/part-00000-13cb4a5a-8284-4998-b91f-0663bd4a72dc.c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite4030049068332705543.adam/referenceName=1/positionBin=240/.part-00000-13cb4a5a-8284-4998-b91f-0663bd4a72dc.c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4030049068332705543.adam/._partitionedByStartPos.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4030049068332705543.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite4030049068332705543.adam/referenceName=2
/tmp/adamTestMvnM5Ay7Lc/TempSuite4030049068332705543.adam/referenceName=2/positionBin=189
/tmp/adamTestMvnM5Ay7Lc/TempSuite4030049068332705543.adam/referenceName=2/positionBin=189/part-00000-13cb4a5a-8284-4998-b91f-0663bd4a72dc.c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite4030049068332705543.adam/referenceName=2/positionBin=189/.part-00000-13cb4a5a-8284-4998-b91f-0663bd4a72dc.c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4030049068332705543.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4030049068332705543.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4607957482909062485.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite4607957482909062485.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4607957482909062485.adam/.part-00000-7bc467b4-2b88-4b17-ae6b-eeaa945fe086-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4607957482909062485.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite4607957482909062485.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite4607957482909062485.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite4607957482909062485.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4607957482909062485.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4607957482909062485.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4607957482909062485.adam/_header
/tmp/adamTestMvnM5Ay7Lc/TempSuite4607957482909062485.adam/part-00000-7bc467b4-2b88-4b17-ae6b-eeaa945fe086-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite1628625063111661660
/tmp/adamTestMvnM5Ay7Lc/.FeatureDatasetFunctionsSuite4405830068673749785.bed.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1684785718597122302.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite1684785718597122302.adam/.part-00001-9200a5e5-e743-4ad0-8824-2f717d426c89-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1684785718597122302.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1684785718597122302.adam/.part-00000-9200a5e5-e743-4ad0-8824-2f717d426c89-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1684785718597122302.adam/part-00000-9200a5e5-e743-4ad0-8824-2f717d426c89-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite1684785718597122302.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite1684785718597122302.adam/part-00001-9200a5e5-e743-4ad0-8824-2f717d426c89-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite1684785718597122302.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite1684785718597122302.adam/part-00002-9200a5e5-e743-4ad0-8824-2f717d426c89-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite1684785718597122302.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1684785718597122302.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1684785718597122302.adam/.part-00002-9200a5e5-e743-4ad0-8824-2f717d426c89-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1684785718597122302.adam/_header
/tmp/adamTestMvnM5Ay7Lc/TempSuite8457346868927173495
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite3857542652837627196
/tmp/adamTestMvnM5Ay7Lc/reads1250680261627283026
/tmp/adamTestMvnM5Ay7Lc/reads1250680261627283026/reads1.fq
/tmp/adamTestMvnM5Ay7Lc/reads1250680261627283026/reads1.fq/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/reads1250680261627283026/reads1.fq/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/reads1250680261627283026/reads1.fq/part-00000
/tmp/adamTestMvnM5Ay7Lc/reads1250680261627283026/reads1.fq/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/reads1250680261627283026/reads2.fq
/tmp/adamTestMvnM5Ay7Lc/reads1250680261627283026/reads2.fq/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/reads1250680261627283026/reads2.fq/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/reads1250680261627283026/reads2.fq/part-00000
/tmp/adamTestMvnM5Ay7Lc/reads1250680261627283026/reads2.fq/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3820788881365299218
/tmp/adamTestMvnM5Ay7Lc/TempSuite8123522562713481864_1.fq
/tmp/adamTestMvnM5Ay7Lc/TempSuite8123522562713481864_1.fq/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8123522562713481864_1.fq/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite8123522562713481864_1.fq/part-00000
/tmp/adamTestMvnM5Ay7Lc/TempSuite8123522562713481864_1.fq/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite700470750898106217.gff3
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite700470750898106217.gff3/.part-00003.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite700470750898106217.gff3/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite700470750898106217.gff3/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite700470750898106217.gff3/part-00003
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite700470750898106217.gff3/part-00000
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite700470750898106217.gff3/part-00002
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite700470750898106217.gff3/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite700470750898106217.gff3/.part-00002.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite700470750898106217.gff3/part-00001
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite700470750898106217.gff3/.part-00001.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1050904479206039994
/tmp/adamTestMvnM5Ay7Lc/TempSuite7158293568136147827
/tmp/adamTestMvnM5Ay7Lc/TempSuite5025230307290699871
/tmp/adamTestMvnM5Ay7Lc/TempSuite8994339003772812849
/tmp/adamTestMvnM5Ay7Lc/TempSuite4048371552073850486.bed
/tmp/adamTestMvnM5Ay7Lc/TempSuite4048371552073850486.bed/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4048371552073850486.bed/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite4048371552073850486.bed/part-00000
/tmp/adamTestMvnM5Ay7Lc/TempSuite4048371552073850486.bed/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite3386667955809640141
/tmp/adamTestMvnM5Ay7Lc/TempSuite935175502406875727.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite935175502406875727.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite935175502406875727.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite935175502406875727.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite935175502406875727.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite935175502406875727.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite935175502406875727.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite935175502406875727.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite935175502406875727.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite935175502406875727.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite935175502406875727.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite935175502406875727.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite935175502406875727.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite935175502406875727.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite935175502406875727.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite935175502406875727.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite935175502406875727.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite935175502406875727.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite935175502406875727.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite935175502406875727.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite935175502406875727.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/2582733653592417769
/tmp/adamTestMvnM5Ay7Lc/2582733653592417769/ordered.sam
/tmp/adamTestMvnM5Ay7Lc/2582733653592417769/.ordered.sam.crc
/tmp/adamTestMvnM5Ay7Lc/.TempSuite1082734937740639893_1.fq.crc
/tmp/adamTestMvnM5Ay7Lc/7346783977703817542
/tmp/adamTestMvnM5Ay7Lc/7346783977703817542/genotypes.nested-annotations.adam
/tmp/adamTestMvnM5Ay7Lc/7346783977703817542/genotypes.nested-annotations.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/7346783977703817542/genotypes.nested-annotations.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/7346783977703817542/genotypes.nested-annotations.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/7346783977703817542/genotypes.nested-annotations.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/7346783977703817542/genotypes.nested-annotations.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/7346783977703817542/genotypes.nested-annotations.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/7346783977703817542/genotypes.nested-annotations.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/7346783977703817542/genotypes.nested-annotations.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/7346783977703817542/genotypes.nested-annotations.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/7346783977703817542/genotypes.nested-annotations.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/7346783977703817542/genotypes.nested-annotations.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/7346783977703817542/genotypes.nested-annotations.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/7346783977703817542/genotypes.nested-annotations.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/7346783977703817542/genotypes.nested-annotations.adam/_header
/tmp/adamTestMvnM5Ay7Lc/TempSuite7158293568136147827.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite7158293568136147827.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7158293568136147827.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite7158293568136147827.adam/_partitionedByStartPos
/tmp/adamTestMvnM5Ay7Lc/TempSuite7158293568136147827.adam/referenceName=1
/tmp/adamTestMvnM5Ay7Lc/TempSuite7158293568136147827.adam/referenceName=1/positionBin=0
/tmp/adamTestMvnM5Ay7Lc/TempSuite7158293568136147827.adam/referenceName=1/positionBin=0/part-00000-635ac5a0-f379-4a4f-bdb2-f729fdd8a469.c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite7158293568136147827.adam/referenceName=1/positionBin=0/.part-00000-635ac5a0-f379-4a4f-bdb2-f729fdd8a469.c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7158293568136147827.adam/._partitionedByStartPos.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7158293568136147827.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite7158293568136147827.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite7158293568136147827.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7158293568136147827.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7158293568136147827.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7158293568136147827.adam/_header
/tmp/adamTestMvnM5Ay7Lc/sorted-variants.lex.vcf4048089373200950207.lex.vcf
/tmp/adamTestMvnM5Ay7Lc/TempSuite3004542067688292890
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite2578127832304567855.narrowPeak
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite2578127832304567855.narrowPeak/.part-00003.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite2578127832304567855.narrowPeak/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite2578127832304567855.narrowPeak/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite2578127832304567855.narrowPeak/part-00003
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite2578127832304567855.narrowPeak/part-00000
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite2578127832304567855.narrowPeak/part-00002
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite2578127832304567855.narrowPeak/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite2578127832304567855.narrowPeak/.part-00002.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite2578127832304567855.narrowPeak/part-00001
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite2578127832304567855.narrowPeak/.part-00001.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5423062359131862173
/tmp/adamTestMvnM5Ay7Lc/ordered.sam2916692962616901813.sam
/tmp/adamTestMvnM5Ay7Lc/TempSuite8172507408083679668.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite8172507408083679668.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite8172507408083679668.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8172507408083679668.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8172507408083679668.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite8172507408083679668.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite8172507408083679668.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite8172507408083679668.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite8172507408083679668.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8172507408083679668.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8172507408083679668.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite8172507408083679668.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite8172507408083679668.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8172507408083679668.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8172507408083679668.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5552552484896142733
/tmp/adamTestMvnM5Ay7Lc/TempSuite8009561591590120826.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite8009561591590120826.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8009561591590120826.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8009561591590120826.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite8009561591590120826.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite8009561591590120826.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite8009561591590120826.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite8009561591590120826.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8009561591590120826.adam/.part-00000-48144dca-9b12-4e24-91bf-95f2c3f5fa6b-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8009561591590120826.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8009561591590120826.adam/part-00000-48144dca-9b12-4e24-91bf-95f2c3f5fa6b-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite7375753969638003441
/tmp/adamTestMvnM5Ay7Lc/.TempSuite6032751085888644942.bam.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1814687887654886140.bed
/tmp/adamTestMvnM5Ay7Lc/TempSuite1814687887654886140.bed/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1814687887654886140.bed/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite1814687887654886140.bed/part-00000
/tmp/adamTestMvnM5Ay7Lc/TempSuite1814687887654886140.bed/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2354075853824035622.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite2354075853824035622.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite2354075853824035622.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite2354075853824035622.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2354075853824035622.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2354075853824035622.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite2354075853824035622.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite2354075853824035622.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2354075853824035622.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite2354075853824035622.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2354075853824035622.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite2354075853824035622.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2354075853824035622.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite2354075853824035622.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2354075853824035622.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite2354075853824035622.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2354075853824035622.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2354075853824035622.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2354075853824035622.adam/_header
/tmp/adamTestMvnM5Ay7Lc/TempSuite4187613941894914209
/tmp/adamTestMvnM5Ay7Lc/TempSuite8108379686393182105.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite8108379686393182105.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite8108379686393182105.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8108379686393182105.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite8108379686393182105.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite8108379686393182105.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8108379686393182105.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8108379686393182105.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite8108379686393182105.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite8108379686393182105.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8108379686393182105.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8108379686393182105.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8108379686393182105.adam/_header
/tmp/adamTestMvnM5Ay7Lc/TempSuite5615980040733623933.fq
/tmp/adamTestMvnM5Ay7Lc/TempSuite5615980040733623933.fq/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5615980040733623933.fq/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite5615980040733623933.fq/part-00000
/tmp/adamTestMvnM5Ay7Lc/TempSuite5615980040733623933.fq/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC2995567894488193938
/tmp/adamTestMvnM5Ay7Lc/javaAC2995567894488193938/testRdd.fragment.adam
/tmp/adamTestMvnM5Ay7Lc/javaAC2995567894488193938/testRdd.fragment.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/javaAC2995567894488193938/testRdd.fragment.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC2995567894488193938/testRdd.fragment.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC2995567894488193938/testRdd.fragment.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/javaAC2995567894488193938/testRdd.fragment.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/javaAC2995567894488193938/testRdd.fragment.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/javaAC2995567894488193938/testRdd.fragment.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/javaAC2995567894488193938/testRdd.fragment.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC2995567894488193938/testRdd.fragment.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC2995567894488193938/testRdd.fragment.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/javaAC2995567894488193938/testRdd.fragment.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/javaAC2995567894488193938/testRdd.fragment.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC2995567894488193938/testRdd.fragment.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC2995567894488193938/testRdd.fragment.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7302128525213288881
/tmp/adamTestMvnM5Ay7Lc/TempSuite882522356049021938.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite882522356049021938.adam/.part-00002-a226c709-9f62-4c18-b589-38c87df89034-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite882522356049021938.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite882522356049021938.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite882522356049021938.adam/part-00002-a226c709-9f62-4c18-b589-38c87df89034-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite882522356049021938.adam/part-00001-a226c709-9f62-4c18-b589-38c87df89034-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite882522356049021938.adam/part-00000-a226c709-9f62-4c18-b589-38c87df89034-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite882522356049021938.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite882522356049021938.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite882522356049021938.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite882522356049021938.adam/.part-00000-a226c709-9f62-4c18-b589-38c87df89034-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite882522356049021938.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite882522356049021938.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite882522356049021938.adam/_header
/tmp/adamTestMvnM5Ay7Lc/TempSuite882522356049021938.adam/.part-00001-a226c709-9f62-4c18-b589-38c87df89034-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite334396046165623214.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite334396046165623214.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite334396046165623214.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite334396046165623214.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite334396046165623214.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite334396046165623214.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite334396046165623214.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite334396046165623214.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite334396046165623214.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite334396046165623214.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite334396046165623214.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite334396046165623214.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite334396046165623214.adam/_header
/tmp/adamTestMvnM5Ay7Lc/TempSuite8824345886593551949
/tmp/adamTestMvnM5Ay7Lc/unordered.sam3791896857609946440.sam
/tmp/adamTestMvnM5Ay7Lc/TempSuite8912513207430921147.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite8912513207430921147.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8912513207430921147.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8912513207430921147.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite8912513207430921147.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite8912513207430921147.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite8912513207430921147.adam/part-00000-7989e606-bbe8-4af6-a451-65f83d1ecb2d-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite8912513207430921147.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite8912513207430921147.adam/.part-00000-7989e606-bbe8-4af6-a451-65f83d1ecb2d-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8912513207430921147.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8912513207430921147.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5237852474843808229
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite4000697563068190325
/tmp/adamTestMvnM5Ay7Lc/TempSuite2027282564647699468.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite2027282564647699468.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite2027282564647699468.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2027282564647699468.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2027282564647699468.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite2027282564647699468.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite2027282564647699468.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite2027282564647699468.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite2027282564647699468.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2027282564647699468.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2027282564647699468.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite2027282564647699468.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite2027282564647699468.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2027282564647699468.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2027282564647699468.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2238242313222610442.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite2238242313222610442.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite2238242313222610442.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2238242313222610442.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite2238242313222610442.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite2238242313222610442.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2238242313222610442.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2238242313222610442.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite2238242313222610442.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite2238242313222610442.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite2238242313222610442.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2238242313222610442.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2238242313222610442.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite9049770838724093934.2.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite9049770838724093934.2.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite9049770838724093934.2.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite9049770838724093934.2.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite9049770838724093934.2.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite9049770838724093934.2.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite9049770838724093934.2.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite9049770838724093934.2.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite9049770838724093934.2.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite9049770838724093934.2.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite9049770838724093934.2.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite9049770838724093934.2.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite9049770838724093934.2.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite9049770838724093934.2.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite9049770838724093934.2.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite6336572176947770544.interval_list
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite6336572176947770544.interval_list/.part-00003.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite6336572176947770544.interval_list/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite6336572176947770544.interval_list/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite6336572176947770544.interval_list/part-00003
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite6336572176947770544.interval_list/part-00000
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite6336572176947770544.interval_list/part-00002
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite6336572176947770544.interval_list/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite6336572176947770544.interval_list/.part-00002.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite6336572176947770544.interval_list/part-00001
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite6336572176947770544.interval_list/.part-00001.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5765765123243377917.gff3
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5765765123243377917.gff3/.part-00003.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5765765123243377917.gff3/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5765765123243377917.gff3/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5765765123243377917.gff3/part-00003
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5765765123243377917.gff3/part-00000
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5765765123243377917.gff3/part-00002
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5765765123243377917.gff3/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5765765123243377917.gff3/.part-00002.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5765765123243377917.gff3/part-00001
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5765765123243377917.gff3/.part-00001.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2290959703849057749.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite2290959703849057749.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2290959703849057749.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2290959703849057749.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite2290959703849057749.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite2290959703849057749.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite2290959703849057749.adam/.part-00002-20e9899a-af46-4e3e-aa9d-f7fb5efa4f42-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2290959703849057749.adam/.part-00001-20e9899a-af46-4e3e-aa9d-f7fb5efa4f42-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2290959703849057749.adam/part-00000-20e9899a-af46-4e3e-aa9d-f7fb5efa4f42-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite2290959703849057749.adam/part-00001-20e9899a-af46-4e3e-aa9d-f7fb5efa4f42-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite2290959703849057749.adam/part-00002-20e9899a-af46-4e3e-aa9d-f7fb5efa4f42-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite2290959703849057749.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite2290959703849057749.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2290959703849057749.adam/.part-00000-20e9899a-af46-4e3e-aa9d-f7fb5efa4f42-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2290959703849057749.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3770899560506247979.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite3770899560506247979.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3770899560506247979.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3770899560506247979.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite3770899560506247979.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite3770899560506247979.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite3770899560506247979.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite3770899560506247979.adam/part-00000-326ec861-f9f5-4045-9b66-ab66191f5525-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite3770899560506247979.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3770899560506247979.adam/.part-00000-326ec861-f9f5-4045-9b66-ab66191f5525-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3770899560506247979.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7092760818808844894.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite7092760818808844894.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite7092760818808844894.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7092760818808844894.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite7092760818808844894.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite7092760818808844894.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7092760818808844894.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7092760818808844894.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite7092760818808844894.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite7092760818808844894.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite7092760818808844894.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7092760818808844894.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7092760818808844894.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7092760818808844894.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7092760818808844894.adam/_header
/tmp/adamTestMvnM5Ay7Lc/small.sam6956332737819778727.sam
/tmp/adamTestMvnM5Ay7Lc/artificial.cram9078501092442674226.cram
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite7962929249119452789.gtf
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite7962929249119452789.gtf/.part-00003.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite7962929249119452789.gtf/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite7962929249119452789.gtf/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite7962929249119452789.gtf/part-00003
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite7962929249119452789.gtf/part-00000
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite7962929249119452789.gtf/part-00002
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite7962929249119452789.gtf/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite7962929249119452789.gtf/.part-00002.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite7962929249119452789.gtf/part-00001
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite7962929249119452789.gtf/.part-00001.crc
/tmp/adamTestMvnM5Ay7Lc/6833395840970657663
/tmp/adamTestMvnM5Ay7Lc/6833395840970657663/.sorted.lex.vcf.crc
/tmp/adamTestMvnM5Ay7Lc/6833395840970657663/sorted.lex.vcf
/tmp/adamTestMvnM5Ay7Lc/unordered.sam2814565627492460462.sam
/tmp/adamTestMvnM5Ay7Lc/TempSuite5268775545823313785.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite5268775545823313785.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite5268775545823313785.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5268775545823313785.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite5268775545823313785.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite5268775545823313785.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5268775545823313785.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5268775545823313785.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite5268775545823313785.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite5268775545823313785.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5268775545823313785.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5268775545823313785.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5268775545823313785.adam/_header
/tmp/adamTestMvnM5Ay7Lc/TempSuite8363332262244355706.bam
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite8608658322568534274.fasta
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite8608658322568534274.fasta/.part-00003.crc
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite8608658322568534274.fasta/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite8608658322568534274.fasta/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite8608658322568534274.fasta/part-00003
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite8608658322568534274.fasta/part-00000
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite8608658322568534274.fasta/part-00002
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite8608658322568534274.fasta/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite8608658322568534274.fasta/.part-00002.crc
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite8608658322568534274.fasta/part-00001
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite8608658322568534274.fasta/.part-00001.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7122892796398234858
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite7591294342199543754
/tmp/adamTestMvnM5Ay7Lc/TempSuite6454251407390573537.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite6454251407390573537.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite6454251407390573537.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite6454251407390573537.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6454251407390573537.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6454251407390573537.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite6454251407390573537.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite6454251407390573537.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6454251407390573537.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite6454251407390573537.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6454251407390573537.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite6454251407390573537.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6454251407390573537.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite6454251407390573537.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite6454251407390573537.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6454251407390573537.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite6454251407390573537.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6454251407390573537.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6454251407390573537.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6454251407390573537.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6454251407390573537.adam/_header
/tmp/adamTestMvnM5Ay7Lc/TempSuite4095565587423640196
/tmp/adamTestMvnM5Ay7Lc/5465943069469784258
/tmp/adamTestMvnM5Ay7Lc/5465943069469784258/out.sam_tail
/tmp/adamTestMvnM5Ay7Lc/5465943069469784258/out.sam_tail/part-r-00000.sam
/tmp/adamTestMvnM5Ay7Lc/5465943069469784258/out.sam_tail/.part-r-00003.sam.crc
/tmp/adamTestMvnM5Ay7Lc/5465943069469784258/out.sam_tail/.part-r-00000.sam.crc
/tmp/adamTestMvnM5Ay7Lc/5465943069469784258/out.sam_tail/part-r-00001.sam
/tmp/adamTestMvnM5Ay7Lc/5465943069469784258/out.sam_tail/.part-r-00002.sam.crc
/tmp/adamTestMvnM5Ay7Lc/5465943069469784258/out.sam_tail/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/5465943069469784258/out.sam_tail/.part-r-00001.sam.crc
/tmp/adamTestMvnM5Ay7Lc/5465943069469784258/out.sam_tail/part-r-00003.sam
/tmp/adamTestMvnM5Ay7Lc/5465943069469784258/out.sam_tail/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/5465943069469784258/out.sam_tail/part-r-00002.sam
/tmp/adamTestMvnM5Ay7Lc/5465943069469784258/.out.sam.crc
/tmp/adamTestMvnM5Ay7Lc/5465943069469784258/out.sam
/tmp/adamTestMvnM5Ay7Lc/5465943069469784258/out.sam_head
/tmp/adamTestMvnM5Ay7Lc/5465943069469784258/.out.sam_head.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3740246436958135387
/tmp/adamTestMvnM5Ay7Lc/TempSuite6936644737977719107
/tmp/adamTestMvnM5Ay7Lc/TempSuite633571918729071495
/tmp/adamTestMvnM5Ay7Lc/random.vcf7824719913245565627.vcf
/tmp/adamTestMvnM5Ay7Lc/TempSuite2542147714521729136.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite2542147714521729136.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2542147714521729136.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite2542147714521729136.adam/_partitionedByStartPos
/tmp/adamTestMvnM5Ay7Lc/TempSuite2542147714521729136.adam/referenceName=13
/tmp/adamTestMvnM5Ay7Lc/TempSuite2542147714521729136.adam/referenceName=13/positionBin=0
/tmp/adamTestMvnM5Ay7Lc/TempSuite2542147714521729136.adam/referenceName=13/positionBin=0/part-00000-b8130feb-6892-407c-8f60-f3db34e05e37.c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite2542147714521729136.adam/referenceName=13/positionBin=0/.part-00000-b8130feb-6892-407c-8f60-f3db34e05e37.c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2542147714521729136.adam/referenceName=1
/tmp/adamTestMvnM5Ay7Lc/TempSuite2542147714521729136.adam/referenceName=1/positionBin=0
/tmp/adamTestMvnM5Ay7Lc/TempSuite2542147714521729136.adam/referenceName=1/positionBin=0/part-00000-b8130feb-6892-407c-8f60-f3db34e05e37.c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite2542147714521729136.adam/referenceName=1/positionBin=0/.part-00000-b8130feb-6892-407c-8f60-f3db34e05e37.c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2542147714521729136.adam/._partitionedByStartPos.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2542147714521729136.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite2542147714521729136.adam/referenceName=2
/tmp/adamTestMvnM5Ay7Lc/TempSuite2542147714521729136.adam/referenceName=2/positionBin=0
/tmp/adamTestMvnM5Ay7Lc/TempSuite2542147714521729136.adam/referenceName=2/positionBin=0/part-00000-b8130feb-6892-407c-8f60-f3db34e05e37.c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite2542147714521729136.adam/referenceName=2/positionBin=0/.part-00000-b8130feb-6892-407c-8f60-f3db34e05e37.c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2542147714521729136.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2542147714521729136.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2542147714521729136.adam/_header
/tmp/adamTestMvnM5Ay7Lc/TempSuite6812178144043896486.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite6812178144043896486.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite6812178144043896486.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6812178144043896486.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6812178144043896486.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite6812178144043896486.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite6812178144043896486.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite6812178144043896486.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite6812178144043896486.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6812178144043896486.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6812178144043896486.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite6812178144043896486.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite6812178144043896486.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6812178144043896486.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6812178144043896486.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite1377988518403644789.fastq
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite1377988518403644789.fastq/.part-00003.crc
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite1377988518403644789.fastq/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite1377988518403644789.fastq/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite1377988518403644789.fastq/part-00003
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite1377988518403644789.fastq/part-00000
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite1377988518403644789.fastq/part-00002
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite1377988518403644789.fastq/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite1377988518403644789.fastq/.part-00002.crc
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite1377988518403644789.fastq/part-00001
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite1377988518403644789.fastq/.part-00001.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite868392290916124159.gff3
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite868392290916124159.gff3/.part-00003.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite868392290916124159.gff3/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite868392290916124159.gff3/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite868392290916124159.gff3/part-00003
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite868392290916124159.gff3/part-00000
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite868392290916124159.gff3/part-00002
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite868392290916124159.gff3/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite868392290916124159.gff3/.part-00002.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite868392290916124159.gff3/part-00001
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite868392290916124159.gff3/.part-00001.crc
/tmp/adamTestMvnM5Ay7Lc/5210533595985167405
/tmp/adamTestMvnM5Ay7Lc/5210533595985167405/ordered.sam
/tmp/adamTestMvnM5Ay7Lc/5210533595985167405/.ordered.sam.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6975650900453331853.sam
/tmp/adamTestMvnM5Ay7Lc/TempSuite6975650900453331853.sam/part-r-00000.sam
/tmp/adamTestMvnM5Ay7Lc/TempSuite6975650900453331853.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6975650900453331853.sam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite6975650900453331853.sam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/5211380753749356868
/tmp/adamTestMvnM5Ay7Lc/5211380753749356868/unordered.sam
/tmp/adamTestMvnM5Ay7Lc/5211380753749356868/.unordered.sam.crc
/tmp/adamTestMvnM5Ay7Lc/reads1035216902919931417
/tmp/adamTestMvnM5Ay7Lc/reads1035216902919931417/reads1.fq
/tmp/adamTestMvnM5Ay7Lc/reads1035216902919931417/reads1.fq/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/reads1035216902919931417/reads1.fq/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/reads1035216902919931417/reads1.fq/part-00000
/tmp/adamTestMvnM5Ay7Lc/reads1035216902919931417/reads1.fq/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/reads1035216902919931417/reads2.fq
/tmp/adamTestMvnM5Ay7Lc/reads1035216902919931417/reads2.fq/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/reads1035216902919931417/reads2.fq/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/reads1035216902919931417/reads2.fq/part-00000
/tmp/adamTestMvnM5Ay7Lc/reads1035216902919931417/reads2.fq/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8700750861310909298
/tmp/adamTestMvnM5Ay7Lc/TempSuite5579504590470700056
/tmp/adamTestMvnM5Ay7Lc/TempSuite5091187749948580904
/tmp/adamTestMvnM5Ay7Lc/TempSuite7638919646999301175
/tmp/adamTestMvnM5Ay7Lc/TempSuite3051245307399656503.bed
/tmp/adamTestMvnM5Ay7Lc/TempSuite3051245307399656503.bed/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3051245307399656503.bed/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite3051245307399656503.bed/part-00000
/tmp/adamTestMvnM5Ay7Lc/TempSuite3051245307399656503.bed/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7010561168683395531
/tmp/adamTestMvnM5Ay7Lc/TempSuite1679108129960743520.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite1679108129960743520.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite1679108129960743520.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1679108129960743520.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1679108129960743520.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite1679108129960743520.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite1679108129960743520.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite1679108129960743520.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite1679108129960743520.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1679108129960743520.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1679108129960743520.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite1679108129960743520.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite1679108129960743520.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1679108129960743520.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1679108129960743520.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7733318715654690161
/tmp/adamTestMvnM5Ay7Lc/TempSuite7805064312028989794.2.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite7805064312028989794.2.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite7805064312028989794.2.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7805064312028989794.2.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7805064312028989794.2.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite7805064312028989794.2.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite7805064312028989794.2.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite7805064312028989794.2.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite7805064312028989794.2.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7805064312028989794.2.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7805064312028989794.2.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite7805064312028989794.2.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite7805064312028989794.2.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7805064312028989794.2.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7805064312028989794.2.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite3740171041414636025
/tmp/adamTestMvnM5Ay7Lc/TempSuite2862378373119902629
/tmp/adamTestMvnM5Ay7Lc/TempSuite851838798742417557.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite851838798742417557.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite851838798742417557.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite851838798742417557.adam/part-00000-f2f02077-a187-40da-be3d-4be9089af7c5-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite851838798742417557.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite851838798742417557.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite851838798742417557.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite851838798742417557.adam/_header
/tmp/adamTestMvnM5Ay7Lc/TempSuite851838798742417557.adam/.part-00000-f2f02077-a187-40da-be3d-4be9089af7c5-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8346585888523579668.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite8346585888523579668.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite8346585888523579668.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8346585888523579668.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite8346585888523579668.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite8346585888523579668.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8346585888523579668.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8346585888523579668.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite8346585888523579668.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite8346585888523579668.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite8346585888523579668.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8346585888523579668.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8346585888523579668.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8346585888523579668.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8346585888523579668.adam/_header
/tmp/adamTestMvnM5Ay7Lc/javaAC5551994555463876751
/tmp/adamTestMvnM5Ay7Lc/javaAC5551994555463876751/testRdd.feature.adam
/tmp/adamTestMvnM5Ay7Lc/javaAC5551994555463876751/testRdd.feature.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/javaAC5551994555463876751/testRdd.feature.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/javaAC5551994555463876751/testRdd.feature.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC5551994555463876751/testRdd.feature.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC5551994555463876751/testRdd.feature.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/javaAC5551994555463876751/testRdd.feature.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/javaAC5551994555463876751/testRdd.feature.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC5551994555463876751/testRdd.feature.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/javaAC5551994555463876751/testRdd.feature.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC5551994555463876751/testRdd.feature.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/javaAC5551994555463876751/testRdd.feature.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC5551994555463876751/testRdd.feature.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/javaAC5551994555463876751/testRdd.feature.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/javaAC5551994555463876751/testRdd.feature.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC5551994555463876751/testRdd.feature.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/javaAC5551994555463876751/testRdd.feature.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC5551994555463876751/testRdd.feature.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC5551994555463876751/testRdd.feature.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1295964639871552970
/tmp/adamTestMvnM5Ay7Lc/javaAC6771224729318463998
/tmp/adamTestMvnM5Ay7Lc/javaAC6771224729318463998/testRdd.sequences.adam
/tmp/adamTestMvnM5Ay7Lc/javaAC6771224729318463998/testRdd.sequences.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/javaAC6771224729318463998/testRdd.sequences.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC6771224729318463998/testRdd.sequences.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/javaAC6771224729318463998/testRdd.sequences.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/javaAC6771224729318463998/testRdd.sequences.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC6771224729318463998/testRdd.sequences.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC6771224729318463998/testRdd.sequences.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/javaAC6771224729318463998/testRdd.sequences.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/javaAC6771224729318463998/testRdd.sequences.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC6771224729318463998/testRdd.sequences.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite540755120991170108.fq
/tmp/adamTestMvnM5Ay7Lc/TempSuite978099787513482860.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite978099787513482860.adam/part-00000-a32ac7c7-3460-4d28-9011-478c81e99d32-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite978099787513482860.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite978099787513482860.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite978099787513482860.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite978099787513482860.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite978099787513482860.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite978099787513482860.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite978099787513482860.adam/.part-00000-a32ac7c7-3460-4d28-9011-478c81e99d32-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite978099787513482860.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite978099787513482860.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite868392290916124159
/tmp/adamTestMvnM5Ay7Lc/TempSuite714351877035361929
/tmp/adamTestMvnM5Ay7Lc/TempSuite4030049068332705543
/tmp/adamTestMvnM5Ay7Lc/TempSuite2354075853824035622
/tmp/adamTestMvnM5Ay7Lc/TempSuite2960388851497769193.bed
/tmp/adamTestMvnM5Ay7Lc/TempSuite2960388851497769193.bed/.part-00003.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2960388851497769193.bed/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2960388851497769193.bed/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite2960388851497769193.bed/part-00003
/tmp/adamTestMvnM5Ay7Lc/TempSuite2960388851497769193.bed/part-00000
/tmp/adamTestMvnM5Ay7Lc/TempSuite2960388851497769193.bed/part-00002
/tmp/adamTestMvnM5Ay7Lc/TempSuite2960388851497769193.bed/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2960388851497769193.bed/.part-00002.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2960388851497769193.bed/part-00001
/tmp/adamTestMvnM5Ay7Lc/TempSuite2960388851497769193.bed/.part-00001.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7248683513010702218.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite7248683513010702218.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7248683513010702218.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite7248683513010702218.adam/part-00000-e4756e8b-f4ac-4f43-911e-c8eb8275adca-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite7248683513010702218.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite7248683513010702218.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7248683513010702218.adam/.part-00000-e4756e8b-f4ac-4f43-911e-c8eb8275adca-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7248683513010702218.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7248683513010702218.adam/_header
/tmp/adamTestMvnM5Ay7Lc/TempSuite5268775545823313785
/tmp/adamTestMvnM5Ay7Lc/TempSuite1050904479206039994.fa
/tmp/adamTestMvnM5Ay7Lc/TempSuite1050904479206039994.fa/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1050904479206039994.fa/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite1050904479206039994.fa/part-00000
/tmp/adamTestMvnM5Ay7Lc/TempSuite1050904479206039994.fa/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4093647957156753771.bed
/tmp/adamTestMvnM5Ay7Lc/TempSuite4093647957156753771.bed/.part-00003.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4093647957156753771.bed/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4093647957156753771.bed/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite4093647957156753771.bed/part-00003
/tmp/adamTestMvnM5Ay7Lc/TempSuite4093647957156753771.bed/part-00000
/tmp/adamTestMvnM5Ay7Lc/TempSuite4093647957156753771.bed/part-00002
/tmp/adamTestMvnM5Ay7Lc/TempSuite4093647957156753771.bed/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4093647957156753771.bed/.part-00002.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4093647957156753771.bed/part-00001
/tmp/adamTestMvnM5Ay7Lc/TempSuite4093647957156753771.bed/.part-00001.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8340113682598945561.bam
/tmp/adamTestMvnM5Ay7Lc/TempSuite8340113682598945561.bam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite8340113682598945561.bam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8340113682598945561.bam/.part-r-00000.bam.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8340113682598945561.bam/part-r-00000.bam
/tmp/adamTestMvnM5Ay7Lc/TempSuite1898994320481016236
/tmp/adamTestMvnM5Ay7Lc/TempSuite4161248954615642873
/tmp/adamTestMvnM5Ay7Lc/TempSuite977285341228744119
/tmp/adamTestMvnM5Ay7Lc/3275760835905599065
/tmp/adamTestMvnM5Ay7Lc/3275760835905599065/binned.adam
/tmp/adamTestMvnM5Ay7Lc/3275760835905599065/binned.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/3275760835905599065/binned.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/3275760835905599065/binned.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/3275760835905599065/binned.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/3275760835905599065/binned.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/3275760835905599065/binned.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/3275760835905599065/binned.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/3275760835905599065/binned.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/3275760835905599065/binned.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/3275760835905599065/binned.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/3275760835905599065/binned.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/3275760835905599065/binned.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/3275760835905599065/binned.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/3275760835905599065/binned.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8645710995730158680
/tmp/adamTestMvnM5Ay7Lc/.SequenceDatasetSuite7031376159916885636.fasta.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1119380753505883243
/tmp/adamTestMvnM5Ay7Lc/2436222778768398997
/tmp/adamTestMvnM5Ay7Lc/2436222778768398997/.artificial.cram.crc
/tmp/adamTestMvnM5Ay7Lc/2436222778768398997/artificial.cram
/tmp/adamTestMvnM5Ay7Lc/TempSuite5548813476643098713.sam
/tmp/adamTestMvnM5Ay7Lc/8363450123063901034
/tmp/adamTestMvnM5Ay7Lc/8363450123063901034/genotypes.lex.adam
/tmp/adamTestMvnM5Ay7Lc/8363450123063901034/genotypes.lex.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/8363450123063901034/genotypes.lex.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/8363450123063901034/genotypes.lex.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/8363450123063901034/genotypes.lex.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/8363450123063901034/genotypes.lex.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/8363450123063901034/genotypes.lex.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/8363450123063901034/genotypes.lex.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/8363450123063901034/genotypes.lex.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/8363450123063901034/genotypes.lex.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/8363450123063901034/genotypes.lex.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/8363450123063901034/genotypes.lex.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/8363450123063901034/genotypes.lex.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/8363450123063901034/genotypes.lex.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/8363450123063901034/genotypes.lex.adam/_header
/tmp/adamTestMvnM5Ay7Lc/TempSuite4330051022329662887
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite6996368049607306247.bed
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite6996368049607306247.bed/.part-00003.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite6996368049607306247.bed/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite6996368049607306247.bed/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite6996368049607306247.bed/part-00003
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite6996368049607306247.bed/part-00000
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite6996368049607306247.bed/part-00002
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite6996368049607306247.bed/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite6996368049607306247.bed/.part-00002.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite6996368049607306247.bed/part-00001
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite6996368049607306247.bed/.part-00001.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4095565587423640196.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite4095565587423640196.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite4095565587423640196.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite4095565587423640196.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4095565587423640196.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4095565587423640196.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite4095565587423640196.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite4095565587423640196.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4095565587423640196.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite4095565587423640196.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4095565587423640196.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite4095565587423640196.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4095565587423640196.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite4095565587423640196.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite4095565587423640196.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4095565587423640196.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite4095565587423640196.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4095565587423640196.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4095565587423640196.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC2160576902560821149
/tmp/adamTestMvnM5Ay7Lc/javaAC2160576902560821149/testRdd.coverage.adam
/tmp/adamTestMvnM5Ay7Lc/javaAC2160576902560821149/testRdd.coverage.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/javaAC2160576902560821149/testRdd.coverage.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/javaAC2160576902560821149/testRdd.coverage.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC2160576902560821149/testRdd.coverage.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC2160576902560821149/testRdd.coverage.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/javaAC2160576902560821149/testRdd.coverage.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/javaAC2160576902560821149/testRdd.coverage.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC2160576902560821149/testRdd.coverage.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/javaAC2160576902560821149/testRdd.coverage.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC2160576902560821149/testRdd.coverage.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/javaAC2160576902560821149/testRdd.coverage.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC2160576902560821149/testRdd.coverage.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/javaAC2160576902560821149/testRdd.coverage.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/javaAC2160576902560821149/testRdd.coverage.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC2160576902560821149/testRdd.coverage.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/javaAC2160576902560821149/testRdd.coverage.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC2160576902560821149/testRdd.coverage.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC2160576902560821149/testRdd.coverage.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1803615444068537102.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite1803615444068537102.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite1803615444068537102.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite1803615444068537102.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1803615444068537102.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1803615444068537102.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite1803615444068537102.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite1803615444068537102.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1803615444068537102.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite1803615444068537102.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1803615444068537102.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite1803615444068537102.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1803615444068537102.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite1803615444068537102.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1803615444068537102.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite1803615444068537102.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1803615444068537102.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1803615444068537102.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1803615444068537102.adam/_header
/tmp/adamTestMvnM5Ay7Lc/TempSuite400100353057894231.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite400100353057894231.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite400100353057894231.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite400100353057894231.adam/_partitionedByStartPos
/tmp/adamTestMvnM5Ay7Lc/TempSuite400100353057894231.adam/referenceName=1
/tmp/adamTestMvnM5Ay7Lc/TempSuite400100353057894231.adam/referenceName=1/positionBin=0
/tmp/adamTestMvnM5Ay7Lc/TempSuite400100353057894231.adam/referenceName=1/positionBin=0/part-00000-ead67a9e-964f-4f03-8a54-ec2a868f3a55.c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite400100353057894231.adam/referenceName=1/positionBin=0/.part-00000-ead67a9e-964f-4f03-8a54-ec2a868f3a55.c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite400100353057894231.adam/referenceName=1/positionBin=169
/tmp/adamTestMvnM5Ay7Lc/TempSuite400100353057894231.adam/referenceName=1/positionBin=169/part-00001-ead67a9e-964f-4f03-8a54-ec2a868f3a55.c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite400100353057894231.adam/referenceName=1/positionBin=169/.part-00001-ead67a9e-964f-4f03-8a54-ec2a868f3a55.c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite400100353057894231.adam/referenceName=1/positionBin=14
/tmp/adamTestMvnM5Ay7Lc/TempSuite400100353057894231.adam/referenceName=1/positionBin=14/part-00000-ead67a9e-964f-4f03-8a54-ec2a868f3a55.c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite400100353057894231.adam/referenceName=1/positionBin=14/.part-00000-ead67a9e-964f-4f03-8a54-ec2a868f3a55.c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite400100353057894231.adam/referenceName=1/positionBin=240
/tmp/adamTestMvnM5Ay7Lc/TempSuite400100353057894231.adam/referenceName=1/positionBin=240/.part-00002-ead67a9e-964f-4f03-8a54-ec2a868f3a55.c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite400100353057894231.adam/referenceName=1/positionBin=240/part-00002-ead67a9e-964f-4f03-8a54-ec2a868f3a55.c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite400100353057894231.adam/._partitionedByStartPos.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite400100353057894231.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite400100353057894231.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite400100353057894231.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite400100353057894231.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8900336640912487263.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite8900336640912487263.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite8900336640912487263.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8900336640912487263.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8900336640912487263.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite8900336640912487263.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite8900336640912487263.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite8900336640912487263.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite8900336640912487263.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8900336640912487263.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8900336640912487263.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite8900336640912487263.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite8900336640912487263.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8900336640912487263.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8900336640912487263.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite844698026967249082
/tmp/adamTestMvnM5Ay7Lc/TempSuite6951326749956314914
/tmp/adamTestMvnM5Ay7Lc/TempSuite6032751085888644942.bam
/tmp/adamTestMvnM5Ay7Lc/gencode.v7.annotation.trunc10.bed8628035171201779073.v7.annotation.trunc10.bed
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite6438228133568912102
/tmp/adamTestMvnM5Ay7Lc/TempSuite7828476689555588024.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite7828476689555588024.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7828476689555588024.adam/.part-00000-fef6194c-0e92-4842-ae02-3c7e832944ed-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7828476689555588024.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite7828476689555588024.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite7828476689555588024.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite7828476689555588024.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7828476689555588024.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7828476689555588024.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7828476689555588024.adam/part-00000-fef6194c-0e92-4842-ae02-3c7e832944ed-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite7828476689555588024.adam/_header
/tmp/adamTestMvnM5Ay7Lc/TempSuite7482788218295794894
/tmp/adamTestMvnM5Ay7Lc/TempSuite9049770838724093934.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite9049770838724093934.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite9049770838724093934.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite9049770838724093934.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite9049770838724093934.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite9049770838724093934.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite9049770838724093934.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite9049770838724093934.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite9049770838724093934.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite9049770838724093934.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite9049770838724093934.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite9049770838724093934.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite9049770838724093934.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite9049770838724093934.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite9049770838724093934.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite1905285286918348897
/tmp/adamTestMvnM5Ay7Lc/TempSuite7390795219664813390.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite7390795219664813390.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite7390795219664813390.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7390795219664813390.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite7390795219664813390.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite7390795219664813390.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7390795219664813390.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7390795219664813390.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite7390795219664813390.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite7390795219664813390.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7390795219664813390.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/unordered.sam1519353065458640679.sam
/tmp/adamTestMvnM5Ay7Lc/4693522110857483154
/tmp/adamTestMvnM5Ay7Lc/4693522110857483154/coverage.adam
/tmp/adamTestMvnM5Ay7Lc/4693522110857483154/coverage.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/4693522110857483154/coverage.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/4693522110857483154/coverage.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/4693522110857483154/coverage.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/4693522110857483154/coverage.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/4693522110857483154/coverage.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/4693522110857483154/coverage.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/4693522110857483154/coverage.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/4693522110857483154/coverage.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/4693522110857483154/coverage.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/4693522110857483154/coverage.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/4693522110857483154/coverage.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/unordered.sam1011717241076928578.sam
/tmp/adamTestMvnM5Ay7Lc/TempSuite5954565187209599124
/tmp/adamTestMvnM5Ay7Lc/TempSuite9031448372295614104.sam
/tmp/adamTestMvnM5Ay7Lc/TempSuite9031448372295614104.sam/part-r-00000.sam
/tmp/adamTestMvnM5Ay7Lc/TempSuite9031448372295614104.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite9031448372295614104.sam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite9031448372295614104.sam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite6798399541550477806
/tmp/adamTestMvnM5Ay7Lc/3380520229161607854
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite6336572176947770544
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite7992812054296435115.bed
/tmp/adamTestMvnM5Ay7Lc/2039261067394580823
/tmp/adamTestMvnM5Ay7Lc/2039261067394580823/predicate.2.adam
/tmp/adamTestMvnM5Ay7Lc/2039261067394580823/predicate.2.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/2039261067394580823/predicate.2.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/2039261067394580823/predicate.2.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/2039261067394580823/predicate.2.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/2039261067394580823/predicate.2.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/2039261067394580823/predicate.2.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/2039261067394580823/predicate.2.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/2039261067394580823/predicate.2.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/2039261067394580823/predicate.2.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/2039261067394580823/predicate.2.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/2039261067394580823/predicate.2.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/2039261067394580823/predicate.2.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/2039261067394580823/predicate.2.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/2039261067394580823/predicate.2.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4451670161049621892.fq
/tmp/adamTestMvnM5Ay7Lc/TempSuite4451670161049621892.fq/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4451670161049621892.fq/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite4451670161049621892.fq/part-00000
/tmp/adamTestMvnM5Ay7Lc/TempSuite4451670161049621892.fq/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/.ReadDatasetSuite6974448282500201045.fastq.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4425632098406226060
/tmp/adamTestMvnM5Ay7Lc/TempSuite716172655034611881.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite716172655034611881.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite716172655034611881.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite716172655034611881.adam/part-00000-5c4ad72e-61dc-4d6d-9132-98421e402972-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite716172655034611881.adam/part-00002-5c4ad72e-61dc-4d6d-9132-98421e402972-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite716172655034611881.adam/.part-00001-5c4ad72e-61dc-4d6d-9132-98421e402972-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite716172655034611881.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite716172655034611881.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite716172655034611881.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite716172655034611881.adam/part-00001-5c4ad72e-61dc-4d6d-9132-98421e402972-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite716172655034611881.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite716172655034611881.adam/.part-00002-5c4ad72e-61dc-4d6d-9132-98421e402972-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite716172655034611881.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite716172655034611881.adam/_header
/tmp/adamTestMvnM5Ay7Lc/TempSuite716172655034611881.adam/.part-00000-5c4ad72e-61dc-4d6d-9132-98421e402972-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1349721119003288591
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite4521573431638167354
/tmp/adamTestMvnM5Ay7Lc/TempSuite6287413043476115823.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite6287413043476115823.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite6287413043476115823.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6287413043476115823.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6287413043476115823.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite6287413043476115823.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite6287413043476115823.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite6287413043476115823.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite6287413043476115823.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6287413043476115823.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6287413043476115823.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite6287413043476115823.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite6287413043476115823.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6287413043476115823.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6287413043476115823.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6460216781141403242
/tmp/adamTestMvnM5Ay7Lc/8156468691419266676
/tmp/adamTestMvnM5Ay7Lc/8156468691419266676/genotypes.lex.adam
/tmp/adamTestMvnM5Ay7Lc/8156468691419266676/genotypes.lex.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/8156468691419266676/genotypes.lex.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/8156468691419266676/genotypes.lex.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/8156468691419266676/genotypes.lex.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/8156468691419266676/genotypes.lex.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/8156468691419266676/genotypes.lex.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/8156468691419266676/genotypes.lex.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/8156468691419266676/genotypes.lex.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/8156468691419266676/genotypes.lex.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/8156468691419266676/genotypes.lex.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/8156468691419266676/genotypes.lex.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/8156468691419266676/genotypes.lex.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/8156468691419266676/genotypes.lex.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/8156468691419266676/genotypes.lex.adam/_header
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite4958135644792852246
/tmp/adamTestMvnM5Ay7Lc/TempSuite2426057282553635365
/tmp/adamTestMvnM5Ay7Lc/TempSuite6430184365950984143.bam
/tmp/adamTestMvnM5Ay7Lc/TempSuite96412952476319969.bed
/tmp/adamTestMvnM5Ay7Lc/TempSuite96412952476319969.bed/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite96412952476319969.bed/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite96412952476319969.bed/part-00000
/tmp/adamTestMvnM5Ay7Lc/TempSuite96412952476319969.bed/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4048371552073850486
/tmp/adamTestMvnM5Ay7Lc/TempSuite1961264101699776476.bed
/tmp/adamTestMvnM5Ay7Lc/TempSuite1961264101699776476.bed/.part-00003.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1961264101699776476.bed/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1961264101699776476.bed/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite1961264101699776476.bed/part-00003
/tmp/adamTestMvnM5Ay7Lc/TempSuite1961264101699776476.bed/part-00000
/tmp/adamTestMvnM5Ay7Lc/TempSuite1961264101699776476.bed/part-00002
/tmp/adamTestMvnM5Ay7Lc/TempSuite1961264101699776476.bed/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1961264101699776476.bed/.part-00002.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1961264101699776476.bed/part-00001
/tmp/adamTestMvnM5Ay7Lc/TempSuite1961264101699776476.bed/.part-00001.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4634156103534049960
/tmp/adamTestMvnM5Ay7Lc/TempSuite1803615444068537102
/tmp/adamTestMvnM5Ay7Lc/TempSuite2762426523892967263
/tmp/adamTestMvnM5Ay7Lc/330268176395086759
/tmp/adamTestMvnM5Ay7Lc/330268176395086759/.artificial.cram.crc
/tmp/adamTestMvnM5Ay7Lc/330268176395086759/artificial.cram
/tmp/adamTestMvnM5Ay7Lc/unordered.sam1516748069044449406.sam
/tmp/adamTestMvnM5Ay7Lc/TempSuite7013471308585304184
/tmp/adamTestMvnM5Ay7Lc/TempSuite8945634692452448114
/tmp/adamTestMvnM5Ay7Lc/TempSuite540755120991170108
/tmp/adamTestMvnM5Ay7Lc/TempSuite8804042815252733346.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite8804042815252733346.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite8804042815252733346.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite8804042815252733346.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8804042815252733346.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8804042815252733346.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite8804042815252733346.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite8804042815252733346.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8804042815252733346.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite8804042815252733346.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8804042815252733346.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite8804042815252733346.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8804042815252733346.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite8804042815252733346.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8804042815252733346.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite8804042815252733346.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8804042815252733346.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite869992297608846774.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite869992297608846774.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite869992297608846774.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite869992297608846774.adam/part-00002-6b41b4eb-6674-46e3-9b43-5be45f7020fc-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite869992297608846774.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite869992297608846774.adam/.part-00001-6b41b4eb-6674-46e3-9b43-5be45f7020fc-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite869992297608846774.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite869992297608846774.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite869992297608846774.adam/part-00001-6b41b4eb-6674-46e3-9b43-5be45f7020fc-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite869992297608846774.adam/part-00000-6b41b4eb-6674-46e3-9b43-5be45f7020fc-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite869992297608846774.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite869992297608846774.adam/.part-00000-6b41b4eb-6674-46e3-9b43-5be45f7020fc-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite869992297608846774.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite869992297608846774.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite869992297608846774.adam/.part-00002-6b41b4eb-6674-46e3-9b43-5be45f7020fc-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4959711671269259117.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite4959711671269259117.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite4959711671269259117.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite4959711671269259117.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4959711671269259117.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4959711671269259117.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite4959711671269259117.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite4959711671269259117.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4959711671269259117.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite4959711671269259117.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4959711671269259117.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite4959711671269259117.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4959711671269259117.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite4959711671269259117.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite4959711671269259117.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4959711671269259117.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite4959711671269259117.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4959711671269259117.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4959711671269259117.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/6281033219843370387
/tmp/adamTestMvnM5Ay7Lc/6281033219843370387/variants.adam
/tmp/adamTestMvnM5Ay7Lc/6281033219843370387/variants.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/6281033219843370387/variants.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/6281033219843370387/variants.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/6281033219843370387/variants.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/6281033219843370387/variants.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/6281033219843370387/variants.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/6281033219843370387/variants.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/6281033219843370387/variants.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/6281033219843370387/variants.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/6281033219843370387/variants.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/6281033219843370387/variants.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/6281033219843370387/variants.adam/_header
/tmp/adamTestMvnM5Ay7Lc/TempSuite4093647957156753771
/tmp/adamTestMvnM5Ay7Lc/javaAC7924386431214239919
/tmp/adamTestMvnM5Ay7Lc/javaAC7924386431214239919/testRdd.sequences.adam
/tmp/adamTestMvnM5Ay7Lc/javaAC7924386431214239919/testRdd.sequences.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/javaAC7924386431214239919/testRdd.sequences.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC7924386431214239919/testRdd.sequences.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/javaAC7924386431214239919/testRdd.sequences.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/javaAC7924386431214239919/testRdd.sequences.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC7924386431214239919/testRdd.sequences.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC7924386431214239919/testRdd.sequences.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/javaAC7924386431214239919/testRdd.sequences.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/javaAC7924386431214239919/testRdd.sequences.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC7924386431214239919/testRdd.sequences.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8079983689485764021.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite8079983689485764021.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite8079983689485764021.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8079983689485764021.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite8079983689485764021.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite8079983689485764021.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8079983689485764021.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8079983689485764021.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite8079983689485764021.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite8079983689485764021.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8079983689485764021.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8079983689485764021.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8079983689485764021.adam/_header
/tmp/adamTestMvnM5Ay7Lc/4492725265486280927
/tmp/adamTestMvnM5Ay7Lc/4492725265486280927/sorted.vcf
/tmp/adamTestMvnM5Ay7Lc/4492725265486280927/.sorted.vcf.crc
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite6974448282500201045
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite961048743041457466.adam
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite961048743041457466.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite961048743041457466.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite961048743041457466.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite961048743041457466.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite961048743041457466.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite961048743041457466.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite961048743041457466.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite961048743041457466.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite961048743041457466.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite961048743041457466.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite961048743041457466.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite961048743041457466.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite961048743041457466.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite961048743041457466.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite961048743041457466.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite961048743041457466.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2160274406068906531
/tmp/adamTestMvnM5Ay7Lc/6752567884153234695
/tmp/adamTestMvnM5Ay7Lc/6752567884153234695/artificial.cram
/tmp/adamTestMvnM5Ay7Lc/6752567884153234695/artificial.cram/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/6752567884153234695/artificial.cram/.part-r-00000.cram.crc
/tmp/adamTestMvnM5Ay7Lc/6752567884153234695/artificial.cram/part-r-00000.cram
/tmp/adamTestMvnM5Ay7Lc/6752567884153234695/artificial.cram/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3740246436958135387.bed
/tmp/adamTestMvnM5Ay7Lc/TempSuite3740246436958135387.bed/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3740246436958135387.bed/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite3740246436958135387.bed/part-00000
/tmp/adamTestMvnM5Ay7Lc/TempSuite3740246436958135387.bed/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8892315696139307721.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite8892315696139307721.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite8892315696139307721.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8892315696139307721.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite8892315696139307721.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite8892315696139307721.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8892315696139307721.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8892315696139307721.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite8892315696139307721.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite8892315696139307721.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8892315696139307721.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/1912168786781039512
/tmp/adamTestMvnM5Ay7Lc/1912168786781039512/ordered.sam
/tmp/adamTestMvnM5Ay7Lc/1912168786781039512/.ordered.sam.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite9031448372295614104
/tmp/adamTestMvnM5Ay7Lc/TempSuite2542147714521729136
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite4377169018460607681.fasta
/tmp/adamTestMvnM5Ay7Lc/TempSuite1283181015955005654.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite1283181015955005654.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1283181015955005654.adam/part-00000-b7c6d732-174c-4fd3-b87a-f04c47833aa2-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite1283181015955005654.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite1283181015955005654.adam/part-00001-b7c6d732-174c-4fd3-b87a-f04c47833aa2-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite1283181015955005654.adam/.part-00002-b7c6d732-174c-4fd3-b87a-f04c47833aa2-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1283181015955005654.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite1283181015955005654.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1283181015955005654.adam/.part-00001-b7c6d732-174c-4fd3-b87a-f04c47833aa2-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1283181015955005654.adam/part-00002-b7c6d732-174c-4fd3-b87a-f04c47833aa2-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite1283181015955005654.adam/.part-00000-b7c6d732-174c-4fd3-b87a-f04c47833aa2-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite2261831041284831600.bed
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite2261831041284831600.bed/.part-00003.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite2261831041284831600.bed/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite2261831041284831600.bed/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite2261831041284831600.bed/part-00003
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite2261831041284831600.bed/part-00000
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite2261831041284831600.bed/part-00002
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite2261831041284831600.bed/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite2261831041284831600.bed/.part-00002.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite2261831041284831600.bed/part-00001
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite2261831041284831600.bed/.part-00001.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6751213166584166285
/tmp/adamTestMvnM5Ay7Lc/TempSuite2140948500186228123.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite2140948500186228123.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite2140948500186228123.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite2140948500186228123.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2140948500186228123.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2140948500186228123.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite2140948500186228123.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite2140948500186228123.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2140948500186228123.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite2140948500186228123.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2140948500186228123.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite2140948500186228123.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2140948500186228123.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite2140948500186228123.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2140948500186228123.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite2140948500186228123.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2140948500186228123.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite158189269758545893.bed
/tmp/adamTestMvnM5Ay7Lc/TempSuite158189269758545893.bed/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite158189269758545893.bed/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite158189269758545893.bed/part-00000
/tmp/adamTestMvnM5Ay7Lc/TempSuite158189269758545893.bed/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3512769134250270024
/tmp/adamTestMvnM5Ay7Lc/TempSuite583224546199263255.bed
/tmp/adamTestMvnM5Ay7Lc/TempSuite583224546199263255.bed/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite583224546199263255.bed/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite583224546199263255.bed/part-00000
/tmp/adamTestMvnM5Ay7Lc/TempSuite583224546199263255.bed/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1342749965267450893
/tmp/adamTestMvnM5Ay7Lc/TempSuite4513245050552394989.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite4513245050552394989.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4513245050552394989.adam/part-00000-e413d2ce-bd90-41c8-a12d-8c7c861b13f7-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite4513245050552394989.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite4513245050552394989.adam/.part-00000-e413d2ce-bd90-41c8-a12d-8c7c861b13f7-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4513245050552394989.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite4513245050552394989.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite4513245050552394989.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4513245050552394989.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4513245050552394989.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4513245050552394989.adam/_header
/tmp/adamTestMvnM5Ay7Lc/6833451652858212506
/tmp/adamTestMvnM5Ay7Lc/6833451652858212506/predicate.2.adam
/tmp/adamTestMvnM5Ay7Lc/6833451652858212506/predicate.2.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/6833451652858212506/predicate.2.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/6833451652858212506/predicate.2.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/6833451652858212506/predicate.2.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/6833451652858212506/predicate.2.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/6833451652858212506/predicate.2.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/6833451652858212506/predicate.2.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/6833451652858212506/predicate.2.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/6833451652858212506/predicate.2.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/6833451652858212506/predicate.2.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/6833451652858212506/predicate.2.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/6833451652858212506/predicate.2.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/6833451652858212506/predicate.2.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/6833451652858212506/predicate.2.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/1579889038426-0
/tmp/adamTestMvnM5Ay7Lc/1579889038426-0/.test.gvcf.vcf.crc
/tmp/adamTestMvnM5Ay7Lc/1579889038426-0/test.gvcf.vcf
/tmp/adamTestMvnM5Ay7Lc/.FeatureDatasetFunctionsSuite2105734354008517232.interval_list.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2039742785991482162reads12.sam
/tmp/adamTestMvnM5Ay7Lc/3640479633636419521
/tmp/adamTestMvnM5Ay7Lc/3640479633636419521/unordered.sam
/tmp/adamTestMvnM5Ay7Lc/3640479633636419521/.unordered.sam.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2238242313222610442
/tmp/adamTestMvnM5Ay7Lc/trinity.fa1993448014209246177.fa
/tmp/adamTestMvnM5Ay7Lc/TempSuite1841308944776992336
/tmp/adamTestMvnM5Ay7Lc/.TempSuite6230452215500629533.fq.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8346585888523579668
/tmp/adamTestMvnM5Ay7Lc/TempSuite1481177712191988721.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite1481177712191988721.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite1481177712191988721.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1481177712191988721.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1481177712191988721.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite1481177712191988721.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite1481177712191988721.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite1481177712191988721.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite1481177712191988721.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1481177712191988721.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1481177712191988721.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite1481177712191988721.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite1481177712191988721.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1481177712191988721.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1481177712191988721.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/reads128547561527170666347
/tmp/adamTestMvnM5Ay7Lc/reads128547561527170666347/reads12.fq
/tmp/adamTestMvnM5Ay7Lc/reads128547561527170666347/reads12.fq/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/reads128547561527170666347/reads12.fq/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/reads128547561527170666347/reads12.fq/part-00000
/tmp/adamTestMvnM5Ay7Lc/reads128547561527170666347/reads12.fq/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3606735933722867368.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite3606735933722867368.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3606735933722867368.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite3606735933722867368.adam/.part-00000-b637d9a0-8436-4c66-88ca-4ec4e820c546-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3606735933722867368.adam/.part-00002-b637d9a0-8436-4c66-88ca-4ec4e820c546-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3606735933722867368.adam/.part-00001-b637d9a0-8436-4c66-88ca-4ec4e820c546-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3606735933722867368.adam/part-00000-b637d9a0-8436-4c66-88ca-4ec4e820c546-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite3606735933722867368.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite3606735933722867368.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite3606735933722867368.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3606735933722867368.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3606735933722867368.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3606735933722867368.adam/_header
/tmp/adamTestMvnM5Ay7Lc/TempSuite3606735933722867368.adam/part-00001-b637d9a0-8436-4c66-88ca-4ec4e820c546-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite3606735933722867368.adam/part-00002-b637d9a0-8436-4c66-88ca-4ec4e820c546-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/adam-cli.TransformFeaturesSuite5280444817465949785.adam
/tmp/adamTestMvnM5Ay7Lc/adam-cli.TransformFeaturesSuite5280444817465949785.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/adam-cli.TransformFeaturesSuite5280444817465949785.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/adam-cli.TransformFeaturesSuite5280444817465949785.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/adam-cli.TransformFeaturesSuite5280444817465949785.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/adam-cli.TransformFeaturesSuite5280444817465949785.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/adam-cli.TransformFeaturesSuite5280444817465949785.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/adam-cli.TransformFeaturesSuite5280444817465949785.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/adam-cli.TransformFeaturesSuite5280444817465949785.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/adam-cli.TransformFeaturesSuite5280444817465949785.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/adam-cli.TransformFeaturesSuite5280444817465949785.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/adam-cli.TransformFeaturesSuite5280444817465949785.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/adam-cli.TransformFeaturesSuite5280444817465949785.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1288756447457516532.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite1288756447457516532.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite1288756447457516532.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite1288756447457516532.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1288756447457516532.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1288756447457516532.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1288756447457516532.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite1288756447457516532.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite1288756447457516532.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite1288756447457516532.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite1288756447457516532.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1288756447457516532.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite1288756447457516532.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1288756447457516532.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite1288756447457516532.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1288756447457516532.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite1288756447457516532.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1288756447457516532.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite1288756447457516532.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1288756447457516532.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1288756447457516532.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6863793700863066991
/tmp/adamTestMvnM5Ay7Lc/7626303441002526684
/tmp/adamTestMvnM5Ay7Lc/7626303441002526684/.readname_sorted.sam.crc
/tmp/adamTestMvnM5Ay7Lc/7626303441002526684/readname_sorted.sam
/tmp/adamTestMvnM5Ay7Lc/2191838767615999771
/tmp/adamTestMvnM5Ay7Lc/2191838767615999771/sorted.sam
/tmp/adamTestMvnM5Ay7Lc/2191838767615999771/.sorted.sam.crc
/tmp/adamTestMvnM5Ay7Lc/hg19.chrM.2bit4434432112126907590.chrM.2bit
/tmp/adamTestMvnM5Ay7Lc/TempSuite8900336640912487263
/tmp/adamTestMvnM5Ay7Lc/TempSuite6751213166584166285.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite6751213166584166285.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite6751213166584166285.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6751213166584166285.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite6751213166584166285.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite6751213166584166285.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6751213166584166285.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6751213166584166285.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite6751213166584166285.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite6751213166584166285.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6751213166584166285.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6751213166584166285.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6751213166584166285.adam/_header
/tmp/adamTestMvnM5Ay7Lc/TempSuite5919379882942865875
/tmp/adamTestMvnM5Ay7Lc/TempSuite6151306431859808886.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite6151306431859808886.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite6151306431859808886.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6151306431859808886.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6151306431859808886.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite6151306431859808886.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite6151306431859808886.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite6151306431859808886.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite6151306431859808886.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6151306431859808886.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6151306431859808886.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite6151306431859808886.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite6151306431859808886.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6151306431859808886.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6151306431859808886.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite3740171041414636025.interval_list
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite3740171041414636025.interval_list/.part-00003.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite3740171041414636025.interval_list/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite3740171041414636025.interval_list/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite3740171041414636025.interval_list/part-00003
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite3740171041414636025.interval_list/part-00000
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite3740171041414636025.interval_list/part-00002
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite3740171041414636025.interval_list/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite3740171041414636025.interval_list/.part-00002.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite3740171041414636025.interval_list/part-00001
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite3740171041414636025.interval_list/.part-00001.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8196278553666223011
/tmp/adamTestMvnM5Ay7Lc/TempSuite1612561079601262848
/tmp/adamTestMvnM5Ay7Lc/TempSuite6903240715451921774
/tmp/adamTestMvnM5Ay7Lc/TempSuite6640292839872327366
/tmp/adamTestMvnM5Ay7Lc/TempSuite4161248954615642873.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite4161248954615642873.adam/.part-00000-402cf6c7-d630-4647-adb5-81139dc8bf1c-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4161248954615642873.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4161248954615642873.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite4161248954615642873.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite4161248954615642873.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4161248954615642873.adam/part-00000-402cf6c7-d630-4647-adb5-81139dc8bf1c-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite6137307451263522279
/tmp/adamTestMvnM5Ay7Lc/TempSuite7837855509004501401.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite7837855509004501401.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7837855509004501401.adam/.part-00000-2ae87fd7-bf34-41d6-aed0-f17108581aa6-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7837855509004501401.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite7837855509004501401.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite7837855509004501401.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7837855509004501401.adam/part-00000-2ae87fd7-bf34-41d6-aed0-f17108581aa6-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite7837855509004501401.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7837855509004501401.adam/_header
/tmp/adamTestMvnM5Ay7Lc/TempSuite8696607200823644614
/tmp/adamTestMvnM5Ay7Lc/TempSuite6070933649307139813
/tmp/adamTestMvnM5Ay7Lc/TempSuite4133115391743467270.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite4133115391743467270.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite4133115391743467270.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4133115391743467270.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite4133115391743467270.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite4133115391743467270.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4133115391743467270.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4133115391743467270.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite4133115391743467270.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite4133115391743467270.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4133115391743467270.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2409547548873711282.fq
/tmp/adamTestMvnM5Ay7Lc/TempSuite2409547548873711282.fq/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2409547548873711282.fq/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite2409547548873711282.fq/part-00000
/tmp/adamTestMvnM5Ay7Lc/TempSuite2409547548873711282.fq/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite3407572449340348473.bed
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite3407572449340348473.bed/.part-00003.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite3407572449340348473.bed/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite3407572449340348473.bed/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite3407572449340348473.bed/part-00003
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite3407572449340348473.bed/part-00000
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite3407572449340348473.bed/part-00002
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite3407572449340348473.bed/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite3407572449340348473.bed/.part-00002.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite3407572449340348473.bed/part-00001
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite3407572449340348473.bed/.part-00001.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8824345886593551949.fa
/tmp/adamTestMvnM5Ay7Lc/TempSuite8824345886593551949.fa/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8824345886593551949.fa/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite8824345886593551949.fa/part-00000
/tmp/adamTestMvnM5Ay7Lc/TempSuite8824345886593551949.fa/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite565471564639021649.narrowPeak
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite565471564639021649.narrowPeak/.part-00003.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite565471564639021649.narrowPeak/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite565471564639021649.narrowPeak/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite565471564639021649.narrowPeak/part-00003
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite565471564639021649.narrowPeak/part-00000
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite565471564639021649.narrowPeak/part-00002
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite565471564639021649.narrowPeak/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite565471564639021649.narrowPeak/.part-00002.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite565471564639021649.narrowPeak/part-00001
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite565471564639021649.narrowPeak/.part-00001.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7564147960968203101
/tmp/adamTestMvnM5Ay7Lc/TempSuite653267127126796823.bam
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite4909281326925930608.gff3
/tmp/adamTestMvnM5Ay7Lc/TempSuite9049770838724093934
/tmp/adamTestMvnM5Ay7Lc/random.vcf832674121814993978.vcf
/tmp/adamTestMvnM5Ay7Lc/TempSuite6137307451263522279.fq
/tmp/adamTestMvnM5Ay7Lc/TempSuite6137307451263522279.fq/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6137307451263522279.fq/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite6137307451263522279.fq/part-00000
/tmp/adamTestMvnM5Ay7Lc/TempSuite6137307451263522279.fq/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/.FeatureDatasetFunctionsSuite4909281326925930608.gff3.crc
/tmp/adamTestMvnM5Ay7Lc/4829886245197722478
/tmp/adamTestMvnM5Ay7Lc/4829886245197722478/predicate.1.adam
/tmp/adamTestMvnM5Ay7Lc/4829886245197722478/predicate.1.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/4829886245197722478/predicate.1.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/4829886245197722478/predicate.1.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/4829886245197722478/predicate.1.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/4829886245197722478/predicate.1.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/4829886245197722478/predicate.1.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/4829886245197722478/predicate.1.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/4829886245197722478/predicate.1.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/4829886245197722478/predicate.1.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/4829886245197722478/predicate.1.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/4829886245197722478/predicate.1.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/4829886245197722478/predicate.1.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/4829886245197722478/predicate.1.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/4829886245197722478/predicate.1.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite8340252989276576791.interval_list
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite8340252989276576791.interval_list/.part-00003.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite8340252989276576791.interval_list/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite8340252989276576791.interval_list/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite8340252989276576791.interval_list/part-00003
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite8340252989276576791.interval_list/part-00000
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite8340252989276576791.interval_list/part-00002
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite8340252989276576791.interval_list/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite8340252989276576791.interval_list/.part-00002.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite8340252989276576791.interval_list/part-00001
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite8340252989276576791.interval_list/.part-00001.crc
/tmp/adamTestMvnM5Ay7Lc/4037144829130772465
/tmp/adamTestMvnM5Ay7Lc/4037144829130772465/.sorted.lex.vcf.crc
/tmp/adamTestMvnM5Ay7Lc/4037144829130772465/sorted.lex.vcf
/tmp/adamTestMvnM5Ay7Lc/TempSuite7599681573492140652
/tmp/adamTestMvnM5Ay7Lc/TempSuite8696607200823644614.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite8696607200823644614.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite8696607200823644614.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8696607200823644614.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite8696607200823644614.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite8696607200823644614.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8696607200823644614.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8696607200823644614.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite8696607200823644614.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite8696607200823644614.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8696607200823644614.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8696607200823644614.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8696607200823644614.adam/_header
/tmp/adamTestMvnM5Ay7Lc/2342204549719431185
/tmp/adamTestMvnM5Ay7Lc/2342204549719431185/unordered.bam
/tmp/adamTestMvnM5Ay7Lc/2342204549719431185/.unordered.bam.crc
/tmp/adamTestMvnM5Ay7Lc/trinity.fa7581756257619599964.fa
/tmp/adamTestMvnM5Ay7Lc/TempSuite2653624554206043328_1.fq
/tmp/adamTestMvnM5Ay7Lc/TempSuite2653624554206043328_1.fq/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2653624554206043328_1.fq/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite2653624554206043328_1.fq/part-00000
/tmp/adamTestMvnM5Ay7Lc/TempSuite2653624554206043328_1.fq/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite4588982584597557952.bed
/tmp/adamTestMvnM5Ay7Lc/TempSuite6863793700863066991.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite6863793700863066991.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite6863793700863066991.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6863793700863066991.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite6863793700863066991.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite6863793700863066991.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6863793700863066991.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6863793700863066991.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite6863793700863066991.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite6863793700863066991.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite6863793700863066991.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6863793700863066991.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6863793700863066991.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite1055523111100513593
/tmp/adamTestMvnM5Ay7Lc/random.vcf7108493535671059548.vcf
/tmp/adamTestMvnM5Ay7Lc/TempSuite8293639525782918460
/tmp/adamTestMvnM5Ay7Lc/TempSuite6511879042912946828
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite5523032276239212315
/tmp/adamTestMvnM5Ay7Lc/TempSuite3836893072382028296.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite3836893072382028296.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite3836893072382028296.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3836893072382028296.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3836893072382028296.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite3836893072382028296.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite3836893072382028296.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite3836893072382028296.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite3836893072382028296.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3836893072382028296.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3836893072382028296.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite3836893072382028296.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite3836893072382028296.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3836893072382028296.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3836893072382028296.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8265279000172237625.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite8265279000172237625.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite8265279000172237625.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8265279000172237625.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8265279000172237625.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite8265279000172237625.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite8265279000172237625.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite8265279000172237625.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite8265279000172237625.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8265279000172237625.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8265279000172237625.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite8265279000172237625.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite8265279000172237625.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8265279000172237625.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8265279000172237625.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite7031376159916885636
/tmp/adamTestMvnM5Ay7Lc/TempSuite1185744647362486243
/tmp/adamTestMvnM5Ay7Lc/TempSuite8912513207430921147
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite3390118422372235904.narrowPeak
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite3390118422372235904.narrowPeak/.part-00003.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite3390118422372235904.narrowPeak/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite3390118422372235904.narrowPeak/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite3390118422372235904.narrowPeak/part-00003
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite3390118422372235904.narrowPeak/part-00000
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite3390118422372235904.narrowPeak/part-00002
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite3390118422372235904.narrowPeak/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite3390118422372235904.narrowPeak/.part-00002.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite3390118422372235904.narrowPeak/part-00001
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite3390118422372235904.narrowPeak/.part-00001.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8146610346393752534.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite8146610346393752534.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite8146610346393752534.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8146610346393752534.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite8146610346393752534.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite8146610346393752534.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8146610346393752534.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8146610346393752534.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite8146610346393752534.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite8146610346393752534.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8146610346393752534.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8146610346393752534.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8146610346393752534.adam/_header
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite7962929249119452789
/tmp/adamTestMvnM5Ay7Lc/TempSuite4992414917565236068
/tmp/adamTestMvnM5Ay7Lc/8190766757788149637
/tmp/adamTestMvnM5Ay7Lc/8190766757788149637/.readname_sorted.sam.crc
/tmp/adamTestMvnM5Ay7Lc/8190766757788149637/readname_sorted.sam
/tmp/adamTestMvnM5Ay7Lc/sorted-variants.vcf5859271931835952353.vcf
/tmp/adamTestMvnM5Ay7Lc/sample1.queryname.sam9050496750231039109.queryname.sam
/tmp/adamTestMvnM5Ay7Lc/TempSuite2409547548873711282
/tmp/adamTestMvnM5Ay7Lc/TempSuite9070090541799288153
/tmp/adamTestMvnM5Ay7Lc/ordered.sam6334977996274104330.sam
/tmp/adamTestMvnM5Ay7Lc/TempSuite2155143432807666777.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite2155143432807666777.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2155143432807666777.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite2155143432807666777.adam/_partitionedByStartPos
/tmp/adamTestMvnM5Ay7Lc/TempSuite2155143432807666777.adam/referenceName=1
/tmp/adamTestMvnM5Ay7Lc/TempSuite2155143432807666777.adam/referenceName=1/positionBin=0
/tmp/adamTestMvnM5Ay7Lc/TempSuite2155143432807666777.adam/referenceName=1/positionBin=0/.part-00000-8906602c-7e01-49b5-9341-e944568c9ed5.c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2155143432807666777.adam/referenceName=1/positionBin=0/part-00000-8906602c-7e01-49b5-9341-e944568c9ed5.c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite2155143432807666777.adam/referenceName=1/positionBin=169
/tmp/adamTestMvnM5Ay7Lc/TempSuite2155143432807666777.adam/referenceName=1/positionBin=169/part-00001-8906602c-7e01-49b5-9341-e944568c9ed5.c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite2155143432807666777.adam/referenceName=1/positionBin=169/.part-00001-8906602c-7e01-49b5-9341-e944568c9ed5.c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2155143432807666777.adam/referenceName=1/positionBin=14
/tmp/adamTestMvnM5Ay7Lc/TempSuite2155143432807666777.adam/referenceName=1/positionBin=14/.part-00000-8906602c-7e01-49b5-9341-e944568c9ed5.c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2155143432807666777.adam/referenceName=1/positionBin=14/part-00000-8906602c-7e01-49b5-9341-e944568c9ed5.c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite2155143432807666777.adam/referenceName=1/positionBin=240
/tmp/adamTestMvnM5Ay7Lc/TempSuite2155143432807666777.adam/referenceName=1/positionBin=240/.part-00002-8906602c-7e01-49b5-9341-e944568c9ed5.c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2155143432807666777.adam/referenceName=1/positionBin=240/part-00002-8906602c-7e01-49b5-9341-e944568c9ed5.c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite2155143432807666777.adam/._partitionedByStartPos.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2155143432807666777.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite2155143432807666777.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite2155143432807666777.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2155143432807666777.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite4252072825910228929.interval_list
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite4252072825910228929.interval_list/.part-00003.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite4252072825910228929.interval_list/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite4252072825910228929.interval_list/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite4252072825910228929.interval_list/part-00003
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite4252072825910228929.interval_list/part-00000
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite4252072825910228929.interval_list/part-00002
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite4252072825910228929.interval_list/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite4252072825910228929.interval_list/.part-00002.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite4252072825910228929.interval_list/part-00001
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite4252072825910228929.interval_list/.part-00001.crc
/tmp/adamTestMvnM5Ay7Lc/5156691407799966551
/tmp/adamTestMvnM5Ay7Lc/5156691407799966551/sorted.vcf
/tmp/adamTestMvnM5Ay7Lc/5156691407799966551/.sorted.vcf.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6272198440934859202.bed
/tmp/adamTestMvnM5Ay7Lc/TempSuite6272198440934859202.bed/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6272198440934859202.bed/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite6272198440934859202.bed/part-00000
/tmp/adamTestMvnM5Ay7Lc/TempSuite6272198440934859202.bed/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite943993290065548107.fasta
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite943993290065548107.fasta/.part-00003.crc
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite943993290065548107.fasta/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite943993290065548107.fasta/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite943993290065548107.fasta/part-00003
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite943993290065548107.fasta/part-00000
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite943993290065548107.fasta/part-00002
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite943993290065548107.fasta/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite943993290065548107.fasta/.part-00002.crc
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite943993290065548107.fasta/part-00001
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite943993290065548107.fasta/.part-00001.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4953846562762768036
/tmp/adamTestMvnM5Ay7Lc/bqsr1.sam2770824189665384674.sam
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite6142134640211626625
/tmp/adamTestMvnM5Ay7Lc/TempSuite1647321563432876249.bed
/tmp/adamTestMvnM5Ay7Lc/TempSuite1647321563432876249.bed/.part-00003.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1647321563432876249.bed/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1647321563432876249.bed/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite1647321563432876249.bed/part-00003
/tmp/adamTestMvnM5Ay7Lc/TempSuite1647321563432876249.bed/part-00000
/tmp/adamTestMvnM5Ay7Lc/TempSuite1647321563432876249.bed/part-00002
/tmp/adamTestMvnM5Ay7Lc/TempSuite1647321563432876249.bed/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1647321563432876249.bed/.part-00002.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1647321563432876249.bed/part-00001
/tmp/adamTestMvnM5Ay7Lc/TempSuite1647321563432876249.bed/.part-00001.crc
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite961048743041457466
/tmp/adamTestMvnM5Ay7Lc/TempSuite9075933596747545449
/tmp/adamTestMvnM5Ay7Lc/TempSuite8457346868927173495reads12.sam
/tmp/adamTestMvnM5Ay7Lc/small.sam5684170910942569874.sam
/tmp/adamTestMvnM5Ay7Lc/TempSuite5548813476643098713
/tmp/adamTestMvnM5Ay7Lc/random.vcf4922649875050905238.vcf
/tmp/adamTestMvnM5Ay7Lc/.FeatureDatasetFunctionsSuite841857496121903112.bed.crc
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite6662137159121725016.fastq
/tmp/adamTestMvnM5Ay7Lc/TempSuite7013471308585304184.fq
/tmp/adamTestMvnM5Ay7Lc/TempSuite7013471308585304184.fq/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7013471308585304184.fq/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite7013471308585304184.fq/part-00000
/tmp/adamTestMvnM5Ay7Lc/TempSuite7013471308585304184.fq/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2027282564647699468
/tmp/adamTestMvnM5Ay7Lc/bqsr18495536507551991512
/tmp/adamTestMvnM5Ay7Lc/bqsr18495536507551991512/bqsr1.bam
/tmp/adamTestMvnM5Ay7Lc/bqsr18495536507551991512/.bqsr1.bam.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8923642106816063034.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite8923642106816063034.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite8923642106816063034.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8923642106816063034.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite8923642106816063034.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite8923642106816063034.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8923642106816063034.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8923642106816063034.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite8923642106816063034.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite8923642106816063034.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8923642106816063034.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/sample1.queryname.sam7835512175014853508.queryname.sam
/tmp/adamTestMvnM5Ay7Lc/TempSuite1119380753505883243.bed
/tmp/adamTestMvnM5Ay7Lc/TempSuite1119380753505883243.bed/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1119380753505883243.bed/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite1119380753505883243.bed/part-00000
/tmp/adamTestMvnM5Ay7Lc/TempSuite1119380753505883243.bed/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8793485392920896991
/tmp/adamTestMvnM5Ay7Lc/TempSuite2569468847347313869
/tmp/adamTestMvnM5Ay7Lc/TempSuite5778357815299011044
/tmp/adamTestMvnM5Ay7Lc/825260809002593586
/tmp/adamTestMvnM5Ay7Lc/825260809002593586/tag.sam
/tmp/adamTestMvnM5Ay7Lc/825260809002593586/.tag.sam.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1255551176240434590.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite1255551176240434590.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite1255551176240434590.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1255551176240434590.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1255551176240434590.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite1255551176240434590.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite1255551176240434590.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite1255551176240434590.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite1255551176240434590.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1255551176240434590.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1255551176240434590.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite1255551176240434590.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite1255551176240434590.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1255551176240434590.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1255551176240434590.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/.TempSuite6826019403277894926_2.fq.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5578617951765658358
/tmp/adamTestMvnM5Ay7Lc/TempSuite3066593043108929523
/tmp/adamTestMvnM5Ay7Lc/TempSuite2426057282553635365.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite2426057282553635365.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite2426057282553635365.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2426057282553635365.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2426057282553635365.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite2426057282553635365.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite2426057282553635365.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite2426057282553635365.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite2426057282553635365.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2426057282553635365.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2426057282553635365.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite2426057282553635365.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite2426057282553635365.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2426057282553635365.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2426057282553635365.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/.FeatureDatasetFunctionsSuite8114593683676855557.narrowPeak.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1802611304161028348
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite6974448282500201045.fastq
/tmp/adamTestMvnM5Ay7Lc/8107052055390300981
/tmp/adamTestMvnM5Ay7Lc/8107052055390300981/genotypes.adam
/tmp/adamTestMvnM5Ay7Lc/8107052055390300981/genotypes.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/8107052055390300981/genotypes.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/8107052055390300981/genotypes.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/8107052055390300981/genotypes.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/8107052055390300981/genotypes.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/8107052055390300981/genotypes.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/8107052055390300981/genotypes.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/8107052055390300981/genotypes.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/8107052055390300981/genotypes.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/8107052055390300981/genotypes.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/8107052055390300981/genotypes.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/8107052055390300981/genotypes.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/8107052055390300981/genotypes.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/8107052055390300981/genotypes.adam/_header
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite2578127832304567855
/tmp/adamTestMvnM5Ay7Lc/TempSuite4302190333625564561
/tmp/adamTestMvnM5Ay7Lc/4181373746368403867
/tmp/adamTestMvnM5Ay7Lc/4181373746368403867/binned.adam
/tmp/adamTestMvnM5Ay7Lc/4181373746368403867/binned.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/4181373746368403867/binned.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/4181373746368403867/binned.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/4181373746368403867/binned.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/4181373746368403867/binned.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/4181373746368403867/binned.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/4181373746368403867/binned.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/4181373746368403867/binned.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/4181373746368403867/binned.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/4181373746368403867/binned.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/4181373746368403867/binned.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/4181373746368403867/binned.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/4181373746368403867/binned.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/4181373746368403867/binned.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1647321563432876249
/tmp/adamTestMvnM5Ay7Lc/TempSuite4992414917565236068.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite4992414917565236068.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite4992414917565236068.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite4992414917565236068.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4992414917565236068.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4992414917565236068.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite4992414917565236068.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite4992414917565236068.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4992414917565236068.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite4992414917565236068.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4992414917565236068.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite4992414917565236068.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4992414917565236068.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite4992414917565236068.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4992414917565236068.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite4992414917565236068.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4992414917565236068.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/8399499174501518469
/tmp/adamTestMvnM5Ay7Lc/8399499174501518469/..gff3.crc
/tmp/adamTestMvnM5Ay7Lc/8399499174501518469/.gff3
/tmp/adamTestMvnM5Ay7Lc/3608126004029301105
/tmp/adamTestMvnM5Ay7Lc/3608126004029301105/ordered.sam
/tmp/adamTestMvnM5Ay7Lc/3608126004029301105/.ordered.sam.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5423062359131862173.narrowPeak
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5423062359131862173.narrowPeak/.part-00003.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5423062359131862173.narrowPeak/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5423062359131862173.narrowPeak/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5423062359131862173.narrowPeak/part-00003
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5423062359131862173.narrowPeak/part-00000
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5423062359131862173.narrowPeak/part-00002
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5423062359131862173.narrowPeak/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5423062359131862173.narrowPeak/.part-00002.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5423062359131862173.narrowPeak/part-00001
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5423062359131862173.narrowPeak/.part-00001.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite943106470552479125.sam
/tmp/adamTestMvnM5Ay7Lc/TempSuite943106470552479125.sam/part-r-00000.sam
/tmp/adamTestMvnM5Ay7Lc/TempSuite943106470552479125.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite943106470552479125.sam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite943106470552479125.sam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite4252072825910228929
/tmp/adamTestMvnM5Ay7Lc/TempSuite5385535421081168149.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite5385535421081168149.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite5385535421081168149.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite5385535421081168149.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5385535421081168149.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5385535421081168149.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite5385535421081168149.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite5385535421081168149.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5385535421081168149.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite5385535421081168149.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5385535421081168149.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite5385535421081168149.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5385535421081168149.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite5385535421081168149.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite5385535421081168149.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5385535421081168149.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite5385535421081168149.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5385535421081168149.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5385535421081168149.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4000525701636319055
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite1901110930458257278.bed
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite1901110930458257278.bed/.part-00003.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite1901110930458257278.bed/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite1901110930458257278.bed/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite1901110930458257278.bed/part-00003
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite1901110930458257278.bed/part-00000
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite1901110930458257278.bed/part-00002
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite1901110930458257278.bed/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite1901110930458257278.bed/.part-00002.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite1901110930458257278.bed/part-00001
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite1901110930458257278.bed/.part-00001.crc
/tmp/adamTestMvnM5Ay7Lc/1579888479355-0
/tmp/adamTestMvnM5Ay7Lc/1579888479355-0/test.vcf
/tmp/adamTestMvnM5Ay7Lc/1579888479355-0/test.vcf/.part-r-00000.crc
/tmp/adamTestMvnM5Ay7Lc/1579888479355-0/test.vcf/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/1579888479355-0/test.vcf/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/1579888479355-0/test.vcf/part-r-00000
/tmp/adamTestMvnM5Ay7Lc/1579888479355-0/test_single.vcf
/tmp/adamTestMvnM5Ay7Lc/1579888479355-0/.test_single.vcf.crc
/tmp/adamTestMvnM5Ay7Lc/unordered.sam1773720855693644030.sam
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite5400902114284432421
/tmp/adamTestMvnM5Ay7Lc/.FeatureDatasetFunctionsSuite3132713250019624777.bed.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite3407572449340348473
/tmp/adamTestMvnM5Ay7Lc/TempSuite1288756447457516532
/tmp/adamTestMvnM5Ay7Lc/TempSuite4886088247186697449.sam
/tmp/adamTestMvnM5Ay7Lc/TempSuite4886088247186697449.sam/part-r-00000.sam
/tmp/adamTestMvnM5Ay7Lc/TempSuite4886088247186697449.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4886088247186697449.sam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite4886088247186697449.sam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2762426523892967263.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite2762426523892967263.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2762426523892967263.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite2762426523892967263.adam/_partitionedByStartPos
/tmp/adamTestMvnM5Ay7Lc/TempSuite2762426523892967263.adam/referenceName=13
/tmp/adamTestMvnM5Ay7Lc/TempSuite2762426523892967263.adam/referenceName=13/positionBin=0
/tmp/adamTestMvnM5Ay7Lc/TempSuite2762426523892967263.adam/referenceName=13/positionBin=0/part-00000-ae715980-a3b3-4c2e-8e9c-42a0f3283ac7.c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite2762426523892967263.adam/referenceName=13/positionBin=0/.part-00000-ae715980-a3b3-4c2e-8e9c-42a0f3283ac7.c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2762426523892967263.adam/referenceName=1
/tmp/adamTestMvnM5Ay7Lc/TempSuite2762426523892967263.adam/referenceName=1/positionBin=0
/tmp/adamTestMvnM5Ay7Lc/TempSuite2762426523892967263.adam/referenceName=1/positionBin=0/part-00000-ae715980-a3b3-4c2e-8e9c-42a0f3283ac7.c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite2762426523892967263.adam/referenceName=1/positionBin=0/.part-00000-ae715980-a3b3-4c2e-8e9c-42a0f3283ac7.c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2762426523892967263.adam/._partitionedByStartPos.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2762426523892967263.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite2762426523892967263.adam/referenceName=2
/tmp/adamTestMvnM5Ay7Lc/TempSuite2762426523892967263.adam/referenceName=2/positionBin=0
/tmp/adamTestMvnM5Ay7Lc/TempSuite2762426523892967263.adam/referenceName=2/positionBin=0/part-00000-ae715980-a3b3-4c2e-8e9c-42a0f3283ac7.c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite2762426523892967263.adam/referenceName=2/positionBin=0/.part-00000-ae715980-a3b3-4c2e-8e9c-42a0f3283ac7.c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2762426523892967263.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2762426523892967263.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2762426523892967263.adam/_header
/tmp/adamTestMvnM5Ay7Lc/TempSuite7281300950672827087
/tmp/adamTestMvnM5Ay7Lc/TempSuite4778206224385552214
/tmp/adamTestMvnM5Ay7Lc/TempSuite9075933596747545449.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite9075933596747545449.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite9075933596747545449.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite9075933596747545449.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite9075933596747545449.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite9075933596747545449.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite9075933596747545449.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite9075933596747545449.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite9075933596747545449.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite9075933596747545449.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite9075933596747545449.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite9075933596747545449.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite9075933596747545449.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite9075933596747545449.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite9075933596747545449.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1975736592146812719
/tmp/adamTestMvnM5Ay7Lc/small.vcf4829679108126759316.vcf
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5765765123243377917
/tmp/adamTestMvnM5Ay7Lc/TempSuite158189269758545893
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5951926402800048191
/tmp/adamTestMvnM5Ay7Lc/1457176084759502328
/tmp/adamTestMvnM5Ay7Lc/1457176084759502328/artificial.cram
/tmp/adamTestMvnM5Ay7Lc/1457176084759502328/artificial.cram/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/1457176084759502328/artificial.cram/.part-r-00000.cram.crc
/tmp/adamTestMvnM5Ay7Lc/1457176084759502328/artificial.cram/part-r-00000.cram
/tmp/adamTestMvnM5Ay7Lc/1457176084759502328/artificial.cram/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/sorted.sam1828288122894295038.sam
/tmp/adamTestMvnM5Ay7Lc/TempSuite6454251407390573537
/tmp/adamTestMvnM5Ay7Lc/TempSuite3202323467987161762.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite3202323467987161762.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3202323467987161762.adam/.part-00000-6e3e9557-0e80-4db8-a6c2-38c2710df8f2-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3202323467987161762.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite3202323467987161762.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite3202323467987161762.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite3202323467987161762.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3202323467987161762.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3202323467987161762.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3202323467987161762.adam/_header
/tmp/adamTestMvnM5Ay7Lc/TempSuite3202323467987161762.adam/part-00000-6e3e9557-0e80-4db8-a6c2-38c2710df8f2-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite9088839156329130557
/tmp/adamTestMvnM5Ay7Lc/TempSuite3202323467987161762
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite3132713250019624777.bed
/tmp/adamTestMvnM5Ay7Lc/TempSuite9058275323505029212
/tmp/adamTestMvnM5Ay7Lc/javaAC2050883551006518052
/tmp/adamTestMvnM5Ay7Lc/javaAC2050883551006518052/testRdd.coverage.adam
/tmp/adamTestMvnM5Ay7Lc/javaAC2050883551006518052/testRdd.coverage.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/javaAC2050883551006518052/testRdd.coverage.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/javaAC2050883551006518052/testRdd.coverage.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC2050883551006518052/testRdd.coverage.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC2050883551006518052/testRdd.coverage.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/javaAC2050883551006518052/testRdd.coverage.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/javaAC2050883551006518052/testRdd.coverage.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC2050883551006518052/testRdd.coverage.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/javaAC2050883551006518052/testRdd.coverage.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC2050883551006518052/testRdd.coverage.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/javaAC2050883551006518052/testRdd.coverage.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC2050883551006518052/testRdd.coverage.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/javaAC2050883551006518052/testRdd.coverage.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/javaAC2050883551006518052/testRdd.coverage.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC2050883551006518052/testRdd.coverage.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/javaAC2050883551006518052/testRdd.coverage.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC2050883551006518052/testRdd.coverage.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC2050883551006518052/testRdd.coverage.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2160274406068906531.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite2160274406068906531.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite2160274406068906531.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2160274406068906531.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite2160274406068906531.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite2160274406068906531.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2160274406068906531.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2160274406068906531.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite2160274406068906531.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite2160274406068906531.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite2160274406068906531.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2160274406068906531.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2160274406068906531.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2160274406068906531.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2160274406068906531.adam/_header
/tmp/adamTestMvnM5Ay7Lc/TempSuite653267127126796823
/tmp/adamTestMvnM5Ay7Lc/TempSuite4632875388283055255
/tmp/adamTestMvnM5Ay7Lc/1579889249232-0
/tmp/adamTestMvnM5Ay7Lc/1579889249232-0/bamReads.adam
/tmp/adamTestMvnM5Ay7Lc/1579889249232-0/bamReads.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/1579889249232-0/bamReads.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/1579889249232-0/bamReads.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/1579889249232-0/bamReads.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/1579889249232-0/bamReads.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/1579889249232-0/bamReads.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/1579889249232-0/bamReads.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/1579889249232-0/bamReads.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/1579889249232-0/bamReads.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/1579889249232-0/bamReads.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/1579889249232-0/bamReads.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/1579889249232-0/bamReads.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/1579889249232-0/bamReads.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/1579889249232-0/bamReads.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8793485392920896991.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite8793485392920896991.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite8793485392920896991.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8793485392920896991.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite8793485392920896991.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite8793485392920896991.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8793485392920896991.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8793485392920896991.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite8793485392920896991.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite8793485392920896991.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8793485392920896991.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8793485392920896991.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8793485392920896991.adam/_header
/tmp/adamTestMvnM5Ay7Lc/javaAC3431217857565567982
/tmp/adamTestMvnM5Ay7Lc/javaAC3431217857565567982/testRdd.slices.adam
/tmp/adamTestMvnM5Ay7Lc/javaAC3431217857565567982/testRdd.slices.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/javaAC3431217857565567982/testRdd.slices.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC3431217857565567982/testRdd.slices.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/javaAC3431217857565567982/testRdd.slices.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/javaAC3431217857565567982/testRdd.slices.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC3431217857565567982/testRdd.slices.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC3431217857565567982/testRdd.slices.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/javaAC3431217857565567982/testRdd.slices.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/javaAC3431217857565567982/testRdd.slices.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC3431217857565567982/testRdd.slices.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2039742785991482162
/tmp/adamTestMvnM5Ay7Lc/TempSuite583224546199263255
/tmp/adamTestMvnM5Ay7Lc/TempSuite5539532798051381277.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite5539532798051381277.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5539532798051381277.adam/.part-00000-650307b2-d612-4372-8bed-9dc6955cf55d-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5539532798051381277.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite5539532798051381277.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite5539532798051381277.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite5539532798051381277.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5539532798051381277.adam/part-00001-650307b2-d612-4372-8bed-9dc6955cf55d-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite5539532798051381277.adam/part-00000-650307b2-d612-4372-8bed-9dc6955cf55d-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite5539532798051381277.adam/.part-00001-650307b2-d612-4372-8bed-9dc6955cf55d-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5539532798051381277.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5539532798051381277.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5539532798051381277.adam/part-00002-650307b2-d612-4372-8bed-9dc6955cf55d-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite5539532798051381277.adam/_header
/tmp/adamTestMvnM5Ay7Lc/TempSuite5539532798051381277.adam/.part-00002-650307b2-d612-4372-8bed-9dc6955cf55d-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6015576984120607610
/tmp/adamTestMvnM5Ay7Lc/2781610051722910415
/tmp/adamTestMvnM5Ay7Lc/2781610051722910415/..gff3.crc
/tmp/adamTestMvnM5Ay7Lc/2781610051722910415/.gff3
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5205085863888692323.interval_list
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5205085863888692323.interval_list/.part-00003.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5205085863888692323.interval_list/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5205085863888692323.interval_list/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5205085863888692323.interval_list/part-00003
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5205085863888692323.interval_list/part-00000
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5205085863888692323.interval_list/part-00002
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5205085863888692323.interval_list/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5205085863888692323.interval_list/.part-00002.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5205085863888692323.interval_list/part-00001
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5205085863888692323.interval_list/.part-00001.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1312307841970106758.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite1312307841970106758.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite1312307841970106758.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite1312307841970106758.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1312307841970106758.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1312307841970106758.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite1312307841970106758.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite1312307841970106758.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1312307841970106758.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite1312307841970106758.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1312307841970106758.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite1312307841970106758.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1312307841970106758.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite1312307841970106758.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite1312307841970106758.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1312307841970106758.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite1312307841970106758.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1312307841970106758.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1312307841970106758.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1312307841970106758.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1312307841970106758.adam/_header
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite6438228133568912102.adam
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite6438228133568912102.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite6438228133568912102.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite6438228133568912102.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite6438228133568912102.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite6438228133568912102.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite6438228133568912102.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite6438228133568912102.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite6438228133568912102.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite6438228133568912102.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite6438228133568912102.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite6438228133568912102.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite6438228133568912102.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite6438228133568912102.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite6438228133568912102.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite6438228133568912102.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite6438228133568912102.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite3581640220218038560.gtf
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite3581640220218038560.gtf/.part-00003.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite3581640220218038560.gtf/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite3581640220218038560.gtf/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite3581640220218038560.gtf/part-00003
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite3581640220218038560.gtf/part-00000
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite3581640220218038560.gtf/part-00002
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite3581640220218038560.gtf/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite3581640220218038560.gtf/.part-00002.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite3581640220218038560.gtf/part-00001
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite3581640220218038560.gtf/.part-00001.crc
/tmp/adamTestMvnM5Ay7Lc/7217533702363454197
/tmp/adamTestMvnM5Ay7Lc/7217533702363454197/ordered.sam
/tmp/adamTestMvnM5Ay7Lc/7217533702363454197/.ordered.sam.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4810034869379443026.bed
/tmp/adamTestMvnM5Ay7Lc/TempSuite4810034869379443026.bed/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4810034869379443026.bed/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite4810034869379443026.bed/part-00000
/tmp/adamTestMvnM5Ay7Lc/TempSuite4810034869379443026.bed/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite8786971494805091213
/tmp/adamTestMvnM5Ay7Lc/TempSuite6287413043476115823
/tmp/adamTestMvnM5Ay7Lc/TempSuite8707383672507922330
/tmp/adamTestMvnM5Ay7Lc/36373631700060654
/tmp/adamTestMvnM5Ay7Lc/36373631700060654/unordered.adam
/tmp/adamTestMvnM5Ay7Lc/36373631700060654/unordered.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/36373631700060654/unordered.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/36373631700060654/unordered.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/36373631700060654/unordered.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/36373631700060654/unordered.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/36373631700060654/unordered.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/36373631700060654/unordered.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/36373631700060654/unordered.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/36373631700060654/unordered.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/36373631700060654/unordered.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/36373631700060654/unordered.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/36373631700060654/unordered.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/36373631700060654/unordered.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/36373631700060654/unordered.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8483636199895596447.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite8483636199895596447.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite8483636199895596447.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8483636199895596447.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8483636199895596447.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite8483636199895596447.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite8483636199895596447.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite8483636199895596447.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite8483636199895596447.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8483636199895596447.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8483636199895596447.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite8483636199895596447.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite8483636199895596447.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8483636199895596447.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8483636199895596447.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7103947853200679572
/tmp/adamTestMvnM5Ay7Lc/TempSuite3820788881365299218.bed
/tmp/adamTestMvnM5Ay7Lc/TempSuite3820788881365299218.bed/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3820788881365299218.bed/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite3820788881365299218.bed/part-00000
/tmp/adamTestMvnM5Ay7Lc/TempSuite3820788881365299218.bed/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/5287898409240889956
/tmp/adamTestMvnM5Ay7Lc/5287898409240889956/.artificial.cram.crc
/tmp/adamTestMvnM5Ay7Lc/5287898409240889956/artificial.cram
/tmp/adamTestMvnM5Ay7Lc/TempSuite3770899560506247979
/tmp/adamTestMvnM5Ay7Lc/TempSuite5578617951765658358.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite5578617951765658358.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite5578617951765658358.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5578617951765658358.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5578617951765658358.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite5578617951765658358.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite5578617951765658358.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite5578617951765658358.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite5578617951765658358.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5578617951765658358.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5578617951765658358.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite5578617951765658358.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite5578617951765658358.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5578617951765658358.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5578617951765658358.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5457094156310203975
/tmp/adamTestMvnM5Ay7Lc/TempSuite8340113682598945561
/tmp/adamTestMvnM5Ay7Lc/TempSuite8583074804026798013.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite8583074804026798013.adam/.part-00000-12a1136e-ce5c-461f-b1e7-909f7c71aeb6-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8583074804026798013.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8583074804026798013.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8583074804026798013.adam/part-00002-12a1136e-ce5c-461f-b1e7-909f7c71aeb6-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite8583074804026798013.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite8583074804026798013.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite8583074804026798013.adam/part-00001-12a1136e-ce5c-461f-b1e7-909f7c71aeb6-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite8583074804026798013.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite8583074804026798013.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite8583074804026798013.adam/.part-00001-12a1136e-ce5c-461f-b1e7-909f7c71aeb6-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8583074804026798013.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8583074804026798013.adam/part-00000-12a1136e-ce5c-461f-b1e7-909f7c71aeb6-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite8583074804026798013.adam/.part-00002-12a1136e-ce5c-461f-b1e7-909f7c71aeb6-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8583074804026798013.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/2158829133225121434
/tmp/adamTestMvnM5Ay7Lc/2158829133225121434/binned.adam
/tmp/adamTestMvnM5Ay7Lc/2158829133225121434/binned.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/2158829133225121434/binned.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/2158829133225121434/binned.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/2158829133225121434/binned.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/2158829133225121434/binned.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/2158829133225121434/binned.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/2158829133225121434/binned.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/2158829133225121434/binned.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/2158829133225121434/binned.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/2158829133225121434/binned.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/2158829133225121434/binned.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/2158829133225121434/binned.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/2158829133225121434/binned.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/2158829133225121434/binned.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite550197185929708880.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite550197185929708880.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite550197185929708880.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite550197185929708880.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite550197185929708880.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite550197185929708880.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite550197185929708880.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite550197185929708880.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite550197185929708880.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite550197185929708880.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite550197185929708880.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite550197185929708880.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite550197185929708880.adam/_header
/tmp/adamTestMvnM5Ay7Lc/TempSuite8323025312187332563.sam
/tmp/adamTestMvnM5Ay7Lc/TempSuite8323025312187332563.sam/part-r-00000.sam
/tmp/adamTestMvnM5Ay7Lc/TempSuite8323025312187332563.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8323025312187332563.sam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite8323025312187332563.sam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC4808017770849302872
/tmp/adamTestMvnM5Ay7Lc/javaAC4808017770849302872/testRdd.read.adam
/tmp/adamTestMvnM5Ay7Lc/javaAC4808017770849302872/testRdd.read.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/javaAC4808017770849302872/testRdd.read.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC4808017770849302872/testRdd.read.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC4808017770849302872/testRdd.read.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/javaAC4808017770849302872/testRdd.read.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/javaAC4808017770849302872/testRdd.read.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/javaAC4808017770849302872/testRdd.read.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/javaAC4808017770849302872/testRdd.read.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC4808017770849302872/testRdd.read.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC4808017770849302872/testRdd.read.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/javaAC4808017770849302872/testRdd.read.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/javaAC4808017770849302872/testRdd.read.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC4808017770849302872/testRdd.read.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC4808017770849302872/testRdd.read.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5470017757762088063.narrowPeak
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5470017757762088063.narrowPeak/.part-00003.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5470017757762088063.narrowPeak/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5470017757762088063.narrowPeak/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5470017757762088063.narrowPeak/part-00003
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5470017757762088063.narrowPeak/part-00000
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5470017757762088063.narrowPeak/part-00002
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5470017757762088063.narrowPeak/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5470017757762088063.narrowPeak/.part-00002.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5470017757762088063.narrowPeak/part-00001
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5470017757762088063.narrowPeak/.part-00001.crc
/tmp/adamTestMvnM5Ay7Lc/random.vcf7112662852249896351.vcf
/tmp/adamTestMvnM5Ay7Lc/TempSuite2991788054250763385.bed
/tmp/adamTestMvnM5Ay7Lc/TempSuite2991788054250763385.bed/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2991788054250763385.bed/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite2991788054250763385.bed/part-00000
/tmp/adamTestMvnM5Ay7Lc/TempSuite2991788054250763385.bed/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2140948500186228123
/tmp/adamTestMvnM5Ay7Lc/TempSuite2418694428088837614
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite5413582838736557287
/tmp/adamTestMvnM5Ay7Lc/TempSuite5552552484896142733.bed
/tmp/adamTestMvnM5Ay7Lc/TempSuite5552552484896142733.bed/.part-00003.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5552552484896142733.bed/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5552552484896142733.bed/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite5552552484896142733.bed/part-00003
/tmp/adamTestMvnM5Ay7Lc/TempSuite5552552484896142733.bed/part-00000
/tmp/adamTestMvnM5Ay7Lc/TempSuite5552552484896142733.bed/part-00002
/tmp/adamTestMvnM5Ay7Lc/TempSuite5552552484896142733.bed/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5552552484896142733.bed/.part-00002.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5552552484896142733.bed/part-00001
/tmp/adamTestMvnM5Ay7Lc/TempSuite5552552484896142733.bed/.part-00001.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite1055523111100513593.gff3
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite5177602475816421109
/tmp/adamTestMvnM5Ay7Lc/TempSuite2320233931440335499.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite2320233931440335499.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2320233931440335499.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2320233931440335499.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite2320233931440335499.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite2320233931440335499.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite2320233931440335499.adam/.part-00000-7a6de51b-0490-4107-9024-0e12b4dc142d-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2320233931440335499.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite2320233931440335499.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2320233931440335499.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2320233931440335499.adam/part-00000-7a6de51b-0490-4107-9024-0e12b4dc142d-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite3975165702061084159
/tmp/adamTestMvnM5Ay7Lc/TempSuite4634156103534049960fragments.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite4634156103534049960fragments.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite4634156103534049960fragments.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4634156103534049960fragments.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4634156103534049960fragments.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite4634156103534049960fragments.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite4634156103534049960fragments.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite4634156103534049960fragments.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite4634156103534049960fragments.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4634156103534049960fragments.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4634156103534049960fragments.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite4634156103534049960fragments.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite4634156103534049960fragments.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4634156103534049960fragments.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4634156103534049960fragments.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/1896024372056216617
/tmp/adamTestMvnM5Ay7Lc/1896024372056216617/variants.lex.adam
/tmp/adamTestMvnM5Ay7Lc/1896024372056216617/variants.lex.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/1896024372056216617/variants.lex.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/1896024372056216617/variants.lex.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/1896024372056216617/variants.lex.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/1896024372056216617/variants.lex.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/1896024372056216617/variants.lex.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/1896024372056216617/variants.lex.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/1896024372056216617/variants.lex.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/1896024372056216617/variants.lex.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/1896024372056216617/variants.lex.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/1896024372056216617/variants.lex.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/1896024372056216617/variants.lex.adam/_header
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite943993290065548107
/tmp/adamTestMvnM5Ay7Lc/javaAC8565627506945073712
/tmp/adamTestMvnM5Ay7Lc/javaAC8565627506945073712/testRdd.feature.adam
/tmp/adamTestMvnM5Ay7Lc/javaAC8565627506945073712/testRdd.feature.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/javaAC8565627506945073712/testRdd.feature.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/javaAC8565627506945073712/testRdd.feature.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC8565627506945073712/testRdd.feature.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC8565627506945073712/testRdd.feature.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/javaAC8565627506945073712/testRdd.feature.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/javaAC8565627506945073712/testRdd.feature.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC8565627506945073712/testRdd.feature.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/javaAC8565627506945073712/testRdd.feature.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC8565627506945073712/testRdd.feature.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/javaAC8565627506945073712/testRdd.feature.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC8565627506945073712/testRdd.feature.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/javaAC8565627506945073712/testRdd.feature.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/javaAC8565627506945073712/testRdd.feature.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC8565627506945073712/testRdd.feature.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/javaAC8565627506945073712/testRdd.feature.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC8565627506945073712/testRdd.feature.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC8565627506945073712/testRdd.feature.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/.TempSuite540755120991170108.fq.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3915063193728399385.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite3915063193728399385.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite3915063193728399385.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite3915063193728399385.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3915063193728399385.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3915063193728399385.adam/part-r-00004.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite3915063193728399385.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite3915063193728399385.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite3915063193728399385.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3915063193728399385.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite3915063193728399385.adam/.part-r-00004.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3915063193728399385.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3915063193728399385.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite3915063193728399385.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3915063193728399385.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite3915063193728399385.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite3915063193728399385.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3915063193728399385.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite3915063193728399385.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3915063193728399385.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3915063193728399385.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1628625063111661660.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite1628625063111661660.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite1628625063111661660.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1628625063111661660.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1628625063111661660.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite1628625063111661660.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite1628625063111661660.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite1628625063111661660.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite1628625063111661660.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1628625063111661660.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1628625063111661660.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite1628625063111661660.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite1628625063111661660.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1628625063111661660.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1628625063111661660.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/ordered.sam8460794790499196559.sam
/tmp/adamTestMvnM5Ay7Lc/TempSuite2487591329971180611
/tmp/adamTestMvnM5Ay7Lc/TempSuite8009561591590120826
/tmp/adamTestMvnM5Ay7Lc/TempSuite9037869520807850185
/tmp/adamTestMvnM5Ay7Lc/TempSuite3391470900537032042
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite4521573431638167354.bed
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite4521573431638167354.bed/.part-00003.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite4521573431638167354.bed/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite4521573431638167354.bed/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite4521573431638167354.bed/part-00003
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite4521573431638167354.bed/part-00000
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite4521573431638167354.bed/part-00002
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite4521573431638167354.bed/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite4521573431638167354.bed/.part-00002.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite4521573431638167354.bed/part-00001
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite4521573431638167354.bed/.part-00001.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6695600941637509350.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite6695600941637509350.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite6695600941637509350.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6695600941637509350.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6695600941637509350.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite6695600941637509350.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite6695600941637509350.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite6695600941637509350.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite6695600941637509350.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6695600941637509350.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6695600941637509350.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite6695600941637509350.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite6695600941637509350.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6695600941637509350.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6695600941637509350.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6511879042912946828.sam
/tmp/adamTestMvnM5Ay7Lc/unordered.sam7134936972355111454.sam
/tmp/adamTestMvnM5Ay7Lc/9138383744666338991
/tmp/adamTestMvnM5Ay7Lc/9138383744666338991/.out.bam_head.crc
/tmp/adamTestMvnM5Ay7Lc/9138383744666338991/.out.bam.crc
/tmp/adamTestMvnM5Ay7Lc/9138383744666338991/out.bam_tail
/tmp/adamTestMvnM5Ay7Lc/9138383744666338991/out.bam_tail/.part-r-00003.bam.crc
/tmp/adamTestMvnM5Ay7Lc/9138383744666338991/out.bam_tail/.part-r-00002.bam.crc
/tmp/adamTestMvnM5Ay7Lc/9138383744666338991/out.bam_tail/part-r-00002.bam
/tmp/adamTestMvnM5Ay7Lc/9138383744666338991/out.bam_tail/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/9138383744666338991/out.bam_tail/.part-r-00001.bam.crc
/tmp/adamTestMvnM5Ay7Lc/9138383744666338991/out.bam_tail/part-r-00003.bam
/tmp/adamTestMvnM5Ay7Lc/9138383744666338991/out.bam_tail/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/9138383744666338991/out.bam_tail/.part-r-00000.bam.crc
/tmp/adamTestMvnM5Ay7Lc/9138383744666338991/out.bam_tail/part-r-00000.bam
/tmp/adamTestMvnM5Ay7Lc/9138383744666338991/out.bam_tail/part-r-00001.bam
/tmp/adamTestMvnM5Ay7Lc/9138383744666338991/out.bam
/tmp/adamTestMvnM5Ay7Lc/9138383744666338991/out.bam_head
/tmp/adamTestMvnM5Ay7Lc/TempSuite1320913334754922333
/tmp/adamTestMvnM5Ay7Lc/TempSuite366944407610055887
/tmp/adamTestMvnM5Ay7Lc/TempSuite633571918729071495.bed
/tmp/adamTestMvnM5Ay7Lc/TempSuite633571918729071495.bed/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite633571918729071495.bed/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite633571918729071495.bed/part-00000
/tmp/adamTestMvnM5Ay7Lc/TempSuite633571918729071495.bed/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite6584865748228292182.fasta
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite6584865748228292182.fasta/.part-00003.crc
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite6584865748228292182.fasta/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite6584865748228292182.fasta/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite6584865748228292182.fasta/part-00003
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite6584865748228292182.fasta/part-00000
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite6584865748228292182.fasta/part-00002
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite6584865748228292182.fasta/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite6584865748228292182.fasta/.part-00002.crc
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite6584865748228292182.fasta/part-00001
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite6584865748228292182.fasta/.part-00001.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6812178144043896486
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite841857496121903112.bed
/tmp/adamTestMvnM5Ay7Lc/TempSuite186989323293338764.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite186989323293338764.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite186989323293338764.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite186989323293338764.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite186989323293338764.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite186989323293338764.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite186989323293338764.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite186989323293338764.adam/.part-00000-51798555-26d0-4d9b-9d06-dafea1ef4d42-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite186989323293338764.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite186989323293338764.adam/_header
/tmp/adamTestMvnM5Ay7Lc/TempSuite186989323293338764.adam/part-00000-51798555-26d0-4d9b-9d06-dafea1ef4d42-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite5433303807206130604.fa
/tmp/adamTestMvnM5Ay7Lc/TempSuite5433303807206130604.fa/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5433303807206130604.fa/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite5433303807206130604.fa/part-00000
/tmp/adamTestMvnM5Ay7Lc/TempSuite5433303807206130604.fa/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite558266321131835935
/tmp/adamTestMvnM5Ay7Lc/TempSuite3428357704866171227
/tmp/adamTestMvnM5Ay7Lc/TempSuite7514876536719646864.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite7514876536719646864.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7514876536719646864.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7514876536719646864.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite7514876536719646864.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite7514876536719646864.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite7514876536719646864.adam/_partitionedByStartPos
/tmp/adamTestMvnM5Ay7Lc/TempSuite7514876536719646864.adam/referenceName=1
/tmp/adamTestMvnM5Ay7Lc/TempSuite7514876536719646864.adam/referenceName=1/positionBin=26
/tmp/adamTestMvnM5Ay7Lc/TempSuite7514876536719646864.adam/referenceName=1/positionBin=26/.part-00000-d3cf1238-7160-435f-b4b1-0820002590c0.c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7514876536719646864.adam/referenceName=1/positionBin=26/part-00000-d3cf1238-7160-435f-b4b1-0820002590c0.c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite7514876536719646864.adam/referenceName=1/positionBin=240
/tmp/adamTestMvnM5Ay7Lc/TempSuite7514876536719646864.adam/referenceName=1/positionBin=240/.part-00000-d3cf1238-7160-435f-b4b1-0820002590c0.c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7514876536719646864.adam/referenceName=1/positionBin=240/part-00000-d3cf1238-7160-435f-b4b1-0820002590c0.c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite7514876536719646864.adam/._partitionedByStartPos.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7514876536719646864.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite7514876536719646864.adam/referenceName=2
/tmp/adamTestMvnM5Ay7Lc/TempSuite7514876536719646864.adam/referenceName=2/positionBin=189
/tmp/adamTestMvnM5Ay7Lc/TempSuite7514876536719646864.adam/referenceName=2/positionBin=189/.part-00000-d3cf1238-7160-435f-b4b1-0820002590c0.c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7514876536719646864.adam/referenceName=2/positionBin=189/part-00000-d3cf1238-7160-435f-b4b1-0820002590c0.c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite7514876536719646864.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7514876536719646864.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1898994320481016236.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite1898994320481016236.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite1898994320481016236.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1898994320481016236.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite1898994320481016236.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite1898994320481016236.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1898994320481016236.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1898994320481016236.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite1898994320481016236.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite1898994320481016236.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1898994320481016236.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1898994320481016236.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1898994320481016236.adam/_header
/tmp/adamTestMvnM5Ay7Lc/TempSuite7921808434574380539
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite6798399541550477806.gff3
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite6798399541550477806.gff3/.part-00003.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite6798399541550477806.gff3/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite6798399541550477806.gff3/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite6798399541550477806.gff3/part-00003
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite6798399541550477806.gff3/part-00000
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite6798399541550477806.gff3/part-00002
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite6798399541550477806.gff3/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite6798399541550477806.gff3/.part-00002.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite6798399541550477806.gff3/part-00001
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite6798399541550477806.gff3/.part-00001.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4069466246209005240
/tmp/adamTestMvnM5Ay7Lc/javaAC2461122508653501351
/tmp/adamTestMvnM5Ay7Lc/javaAC2461122508653501351/testRdd.variant.adam
/tmp/adamTestMvnM5Ay7Lc/javaAC2461122508653501351/testRdd.variant.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/javaAC2461122508653501351/testRdd.variant.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC2461122508653501351/testRdd.variant.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/javaAC2461122508653501351/testRdd.variant.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/javaAC2461122508653501351/testRdd.variant.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC2461122508653501351/testRdd.variant.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC2461122508653501351/testRdd.variant.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/javaAC2461122508653501351/testRdd.variant.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/javaAC2461122508653501351/testRdd.variant.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC2461122508653501351/testRdd.variant.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC2461122508653501351/testRdd.variant.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC2461122508653501351/testRdd.variant.adam/_header
/tmp/adamTestMvnM5Ay7Lc/TempSuite4953846562762768036.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite4953846562762768036.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4953846562762768036.adam/.part-00000-d8ced442-07af-4e2a-9b17-ab2bdccff341-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4953846562762768036.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4953846562762768036.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite4953846562762768036.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite4953846562762768036.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite4953846562762768036.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite4953846562762768036.adam/part-00000-d8ced442-07af-4e2a-9b17-ab2bdccff341-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite4953846562762768036.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4953846562762768036.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/4154513627828108160
/tmp/adamTestMvnM5Ay7Lc/4154513627828108160/predicate.3.adam
/tmp/adamTestMvnM5Ay7Lc/4154513627828108160/predicate.3.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/4154513627828108160/predicate.3.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/4154513627828108160/predicate.3.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/4154513627828108160/predicate.3.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/4154513627828108160/predicate.3.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/4154513627828108160/predicate.3.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/4154513627828108160/predicate.3.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/4154513627828108160/predicate.3.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/4154513627828108160/predicate.3.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/4154513627828108160/predicate.3.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/4154513627828108160/predicate.3.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/4154513627828108160/predicate.3.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/4154513627828108160/predicate.3.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/4154513627828108160/predicate.3.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite7224382560753393656
/tmp/adamTestMvnM5Ay7Lc/TempSuite8293639525782918460.bed
/tmp/adamTestMvnM5Ay7Lc/TempSuite8293639525782918460.bed/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8293639525782918460.bed/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite8293639525782918460.bed/part-00000
/tmp/adamTestMvnM5Ay7Lc/TempSuite8293639525782918460.bed/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite888010868824520678
/tmp/adamTestMvnM5Ay7Lc/TempSuite4778206224385552214.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite4778206224385552214.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite4778206224385552214.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4778206224385552214.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4778206224385552214.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite4778206224385552214.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite4778206224385552214.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite4778206224385552214.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite4778206224385552214.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4778206224385552214.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4778206224385552214.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite4778206224385552214.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite4778206224385552214.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4778206224385552214.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4778206224385552214.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8994339003772812849.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite8994339003772812849.adam/part-00001-666b5c07-eec3-4824-94ca-cbbf912a0121-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite8994339003772812849.adam/.part-00001-666b5c07-eec3-4824-94ca-cbbf912a0121-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8994339003772812849.adam/.part-00002-666b5c07-eec3-4824-94ca-cbbf912a0121-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8994339003772812849.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8994339003772812849.adam/.part-00000-666b5c07-eec3-4824-94ca-cbbf912a0121-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8994339003772812849.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8994339003772812849.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite8994339003772812849.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite8994339003772812849.adam/part-00002-666b5c07-eec3-4824-94ca-cbbf912a0121-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite8994339003772812849.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite8994339003772812849.adam/part-00000-666b5c07-eec3-4824-94ca-cbbf912a0121-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite8994339003772812849.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite8994339003772812849.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8994339003772812849.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3796438917677582770
/tmp/adamTestMvnM5Ay7Lc/TempSuite1591272129952838186.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite1591272129952838186.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite1591272129952838186.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1591272129952838186.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite1591272129952838186.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite1591272129952838186.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1591272129952838186.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1591272129952838186.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite1591272129952838186.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite1591272129952838186.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1591272129952838186.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1591272129952838186.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1591272129952838186.adam/_header
/tmp/adamTestMvnM5Ay7Lc/TempSuite5572749934952809653.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite5572749934952809653.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite5572749934952809653.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite5572749934952809653.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5572749934952809653.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5572749934952809653.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5572749934952809653.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite5572749934952809653.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite5572749934952809653.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite5572749934952809653.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite5572749934952809653.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5572749934952809653.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite5572749934952809653.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5572749934952809653.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite5572749934952809653.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5572749934952809653.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite5572749934952809653.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5572749934952809653.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite5572749934952809653.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5572749934952809653.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5572749934952809653.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6748868132682522137.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite6748868132682522137.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite6748868132682522137.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6748868132682522137.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite6748868132682522137.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite6748868132682522137.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6748868132682522137.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6748868132682522137.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite6748868132682522137.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite6748868132682522137.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6748868132682522137.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/302609960151413143
/tmp/adamTestMvnM5Ay7Lc/302609960151413143/unordered.sam
/tmp/adamTestMvnM5Ay7Lc/302609960151413143/.unordered.sam.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite783981372989572371.narrowPeak
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite4588982584597557952
/tmp/adamTestMvnM5Ay7Lc/5900385299814181534
/tmp/adamTestMvnM5Ay7Lc/5900385299814181534/sorted.vcf
/tmp/adamTestMvnM5Ay7Lc/5900385299814181534/.sorted.vcf.crc
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite2601503089772728699
/tmp/adamTestMvnM5Ay7Lc/TempSuite4805809038520713554.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite4805809038520713554.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite4805809038520713554.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4805809038520713554.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4805809038520713554.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite4805809038520713554.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite4805809038520713554.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite4805809038520713554.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite4805809038520713554.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4805809038520713554.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4805809038520713554.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite4805809038520713554.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite4805809038520713554.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4805809038520713554.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4805809038520713554.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite163443561641084006.bed
/tmp/adamTestMvnM5Ay7Lc/TempSuite163443561641084006.bed/.part-00003.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite163443561641084006.bed/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite163443561641084006.bed/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite163443561641084006.bed/part-00003
/tmp/adamTestMvnM5Ay7Lc/TempSuite163443561641084006.bed/part-00000
/tmp/adamTestMvnM5Ay7Lc/TempSuite163443561641084006.bed/part-00002
/tmp/adamTestMvnM5Ay7Lc/TempSuite163443561641084006.bed/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite163443561641084006.bed/.part-00002.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite163443561641084006.bed/part-00001
/tmp/adamTestMvnM5Ay7Lc/TempSuite163443561641084006.bed/.part-00001.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite332768735421145939
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite4909281326925930608
/tmp/adamTestMvnM5Ay7Lc/TempSuite7679608000738216552.fa
/tmp/adamTestMvnM5Ay7Lc/TempSuite7679608000738216552.fa/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7679608000738216552.fa/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite7679608000738216552.fa/part-00000
/tmp/adamTestMvnM5Ay7Lc/TempSuite7679608000738216552.fa/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2817877458039590183.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite2817877458039590183.adam/.part-00000-e0a7791a-a3e3-4e54-9c81-7ae18322f865-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2817877458039590183.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2817877458039590183.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite2817877458039590183.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite2817877458039590183.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2817877458039590183.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2817877458039590183.adam/_header
/tmp/adamTestMvnM5Ay7Lc/TempSuite2817877458039590183.adam/part-00000-e0a7791a-a3e3-4e54-9c81-7ae18322f865-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite841857496121903112
/tmp/adamTestMvnM5Ay7Lc/TempSuite7593922567881203483
/tmp/adamTestMvnM5Ay7Lc/TempSuite4805809038520713554
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite8029791675296009667.interval_list
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite8029791675296009667.interval_list/.part-00003.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite8029791675296009667.interval_list/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite8029791675296009667.interval_list/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite8029791675296009667.interval_list/part-00003
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite8029791675296009667.interval_list/part-00000
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite8029791675296009667.interval_list/part-00002
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite8029791675296009667.interval_list/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite8029791675296009667.interval_list/.part-00002.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite8029791675296009667.interval_list/part-00001
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite8029791675296009667.interval_list/.part-00001.crc
/tmp/adamTestMvnM5Ay7Lc/ordered.sam5211295215954047596.sam
/tmp/adamTestMvnM5Ay7Lc/javaAC1397484271697720958
/tmp/adamTestMvnM5Ay7Lc/javaAC1397484271697720958/testRdd.read.adam
/tmp/adamTestMvnM5Ay7Lc/javaAC1397484271697720958/testRdd.read.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/javaAC1397484271697720958/testRdd.read.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC1397484271697720958/testRdd.read.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC1397484271697720958/testRdd.read.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/javaAC1397484271697720958/testRdd.read.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/javaAC1397484271697720958/testRdd.read.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/javaAC1397484271697720958/testRdd.read.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/javaAC1397484271697720958/testRdd.read.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC1397484271697720958/testRdd.read.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC1397484271697720958/testRdd.read.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/javaAC1397484271697720958/testRdd.read.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/javaAC1397484271697720958/testRdd.read.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC1397484271697720958/testRdd.read.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC1397484271697720958/testRdd.read.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2569313460183217481
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite3386667955809640141.gff3
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite3386667955809640141.gff3/.part-00003.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite3386667955809640141.gff3/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite3386667955809640141.gff3/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite3386667955809640141.gff3/part-00003
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite3386667955809640141.gff3/part-00000
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite3386667955809640141.gff3/part-00002
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite3386667955809640141.gff3/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite3386667955809640141.gff3/.part-00002.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite3386667955809640141.gff3/part-00001
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite3386667955809640141.gff3/.part-00001.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6826019403277894926_2.fq
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite7992812054296435115
/tmp/adamTestMvnM5Ay7Lc/TempSuite712928857563911558
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite2261831041284831600
/tmp/adamTestMvnM5Ay7Lc/small.sam8163718735120267454.sam
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite8608658322568534274
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite4405830068673749785.bed
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite5523032276239212315.fastq
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite5523032276239212315.fastq/.part-00003.crc
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite5523032276239212315.fastq/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite5523032276239212315.fastq/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite5523032276239212315.fastq/part-00003
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite5523032276239212315.fastq/part-00000
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite5523032276239212315.fastq/part-00002
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite5523032276239212315.fastq/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite5523032276239212315.fastq/.part-00002.crc
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite5523032276239212315.fastq/part-00001
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite5523032276239212315.fastq/.part-00001.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3842885780449953994.bed
/tmp/adamTestMvnM5Ay7Lc/TempSuite3842885780449953994.bed/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3842885780449953994.bed/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite3842885780449953994.bed/part-00000
/tmp/adamTestMvnM5Ay7Lc/TempSuite3842885780449953994.bed/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite4377169018460607681
/tmp/adamTestMvnM5Ay7Lc/TempSuite2207457772977498642
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite7336131769402186214.gtf
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite7336131769402186214.gtf/.part-00003.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite7336131769402186214.gtf/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite7336131769402186214.gtf/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite7336131769402186214.gtf/part-00003
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite7336131769402186214.gtf/part-00000
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite7336131769402186214.gtf/part-00002
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite7336131769402186214.gtf/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite7336131769402186214.gtf/.part-00002.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite7336131769402186214.gtf/part-00001
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite7336131769402186214.gtf/.part-00001.crc
/tmp/adamTestMvnM5Ay7Lc/gencode.v7.annotation.trunc10.bed4385429941679670738.v7.annotation.trunc10.bed
/tmp/adamTestMvnM5Ay7Lc/TempSuite8525690273560425031.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite8525690273560425031.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite8525690273560425031.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8525690273560425031.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8525690273560425031.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite8525690273560425031.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite8525690273560425031.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite8525690273560425031.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite8525690273560425031.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8525690273560425031.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8525690273560425031.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite8525690273560425031.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite8525690273560425031.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8525690273560425031.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8525690273560425031.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1283181015955005654
/tmp/adamTestMvnM5Ay7Lc/TempSuite2239234711259057538
/tmp/adamTestMvnM5Ay7Lc/TempSuite8219288057024843711.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite8219288057024843711.adam/part-00002-665f39fa-e84a-4dd5-8d12-cbd293588bdf-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite8219288057024843711.adam/part-00001-665f39fa-e84a-4dd5-8d12-cbd293588bdf-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite8219288057024843711.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8219288057024843711.adam/.part-00002-665f39fa-e84a-4dd5-8d12-cbd293588bdf-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8219288057024843711.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite8219288057024843711.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite8219288057024843711.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8219288057024843711.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8219288057024843711.adam/_header
/tmp/adamTestMvnM5Ay7Lc/TempSuite8219288057024843711.adam/part-00000-665f39fa-e84a-4dd5-8d12-cbd293588bdf-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite8219288057024843711.adam/.part-00000-665f39fa-e84a-4dd5-8d12-cbd293588bdf-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8219288057024843711.adam/.part-00001-665f39fa-e84a-4dd5-8d12-cbd293588bdf-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7496906236205992750.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite7496906236205992750.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite7496906236205992750.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite7496906236205992750.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7496906236205992750.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7496906236205992750.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite7496906236205992750.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite7496906236205992750.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7496906236205992750.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite7496906236205992750.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7496906236205992750.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite7496906236205992750.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7496906236205992750.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite7496906236205992750.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7496906236205992750.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite7496906236205992750.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7496906236205992750.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7496906236205992750.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7496906236205992750.adam/_header
/tmp/adamTestMvnM5Ay7Lc/TempSuite8457346868927173495reads12.sam_2
/tmp/adamTestMvnM5Ay7Lc/TempSuite1831179012881806730.bed
/tmp/adamTestMvnM5Ay7Lc/TempSuite1831179012881806730.bed/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1831179012881806730.bed/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite1831179012881806730.bed/part-00000
/tmp/adamTestMvnM5Ay7Lc/TempSuite1831179012881806730.bed/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1780584441123602044
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite4958135644792852246.gff3
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite4958135644792852246.gff3/.part-00003.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite4958135644792852246.gff3/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite4958135644792852246.gff3/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite4958135644792852246.gff3/part-00003
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite4958135644792852246.gff3/part-00000
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite4958135644792852246.gff3/part-00002
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite4958135644792852246.gff3/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite4958135644792852246.gff3/.part-00002.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite4958135644792852246.gff3/part-00001
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite4958135644792852246.gff3/.part-00001.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2569313460183217481.bed
/tmp/adamTestMvnM5Ay7Lc/TempSuite2569313460183217481.bed/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2569313460183217481.bed/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite2569313460183217481.bed/part-00000
/tmp/adamTestMvnM5Ay7Lc/TempSuite2569313460183217481.bed/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2630253775491682942
/tmp/adamTestMvnM5Ay7Lc/sample_coverage.bed4473665805154247964.bed
/tmp/adamTestMvnM5Ay7Lc/TempSuite4000525701636319055.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite4000525701636319055.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite4000525701636319055.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4000525701636319055.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite4000525701636319055.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite4000525701636319055.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4000525701636319055.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4000525701636319055.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite4000525701636319055.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite4000525701636319055.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4000525701636319055.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4000525701636319055.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4000525701636319055.adam/_header
/tmp/adamTestMvnM5Ay7Lc/TempSuite3975165702061084159.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite3975165702061084159.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite3975165702061084159.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3975165702061084159.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite3975165702061084159.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite3975165702061084159.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3975165702061084159.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3975165702061084159.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite3975165702061084159.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite3975165702061084159.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite3975165702061084159.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3975165702061084159.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3975165702061084159.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3975165702061084159.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3975165702061084159.adam/_header
/tmp/adamTestMvnM5Ay7Lc/TempSuite7679608000738216552
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite7176645935424080655
/tmp/adamTestMvnM5Ay7Lc/TempSuite8353089165181274419
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite6750164447482301740
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5221922537114433080
/tmp/adamTestMvnM5Ay7Lc/TempSuite1385743233192804770
/tmp/adamTestMvnM5Ay7Lc/TempSuite4153893406942636294.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite4153893406942636294.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4153893406942636294.adam/.part-00000-d755f586-c7d1-4b9b-9738-1bc84ce0f007-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4153893406942636294.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4153893406942636294.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite4153893406942636294.adam/part-00000-d755f586-c7d1-4b9b-9738-1bc84ce0f007-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite4153893406942636294.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite4153893406942636294.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite4153893406942636294.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite4153893406942636294.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4153893406942636294.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite1377988518403644789
/tmp/adamTestMvnM5Ay7Lc/TempSuite1567336495159598162
/tmp/adamTestMvnM5Ay7Lc/sorted.sam6709425145720539240.sam
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite8372516318200512316.adam
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite8372516318200512316.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite8372516318200512316.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite8372516318200512316.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite8372516318200512316.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite8372516318200512316.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite8372516318200512316.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite8372516318200512316.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite8372516318200512316.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite8372516318200512316.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite8372516318200512316.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite8372516318200512316.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite8372516318200512316.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite8372516318200512316.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite8372516318200512316.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite8372516318200512316.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite8372516318200512316.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4160305003115693169.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite4160305003115693169.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4160305003115693169.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite4160305003115693169.adam/.part-00000-d4363db0-5cee-4f2e-92ba-897ca3cae655-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4160305003115693169.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite4160305003115693169.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite4160305003115693169.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4160305003115693169.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4160305003115693169.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4160305003115693169.adam/_header
/tmp/adamTestMvnM5Ay7Lc/TempSuite4160305003115693169.adam/part-00000-d4363db0-5cee-4f2e-92ba-897ca3cae655-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite2553407576010395057
/tmp/adamTestMvnM5Ay7Lc/5069924721360724134
/tmp/adamTestMvnM5Ay7Lc/TempSuite208035839783668478.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite208035839783668478.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite208035839783668478.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite208035839783668478.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite208035839783668478.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite208035839783668478.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite208035839783668478.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite208035839783668478.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite208035839783668478.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite208035839783668478.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite208035839783668478.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite208035839783668478.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite208035839783668478.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite208035839783668478.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite208035839783668478.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6748868132682522137
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite1568939438230235209.narrowPeak
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite1568939438230235209.narrowPeak/.part-00003.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite1568939438230235209.narrowPeak/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite1568939438230235209.narrowPeak/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite1568939438230235209.narrowPeak/part-00003
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite1568939438230235209.narrowPeak/part-00000
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite1568939438230235209.narrowPeak/part-00002
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite1568939438230235209.narrowPeak/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite1568939438230235209.narrowPeak/.part-00002.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite1568939438230235209.narrowPeak/part-00001
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite1568939438230235209.narrowPeak/.part-00001.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3842885780449953994
/tmp/adamTestMvnM5Ay7Lc/TempSuite8363332262244355706
/tmp/adamTestMvnM5Ay7Lc/TempSuite6230452215500629533
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite72589948995444643
/tmp/adamTestMvnM5Ay7Lc/TempSuite4880509820756659953
/tmp/adamTestMvnM5Ay7Lc/TempSuite7375753969638003441.sam
/tmp/adamTestMvnM5Ay7Lc/TempSuite7375753969638003441.sam/part-r-00000.sam
/tmp/adamTestMvnM5Ay7Lc/TempSuite7375753969638003441.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7375753969638003441.sam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite7375753969638003441.sam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5433303807206130604
/tmp/adamTestMvnM5Ay7Lc/TempSuite7092760818808844894
/tmp/adamTestMvnM5Ay7Lc/TempSuite2628454560249017766
/tmp/adamTestMvnM5Ay7Lc/1579889662468-0
/tmp/adamTestMvnM5Ay7Lc/1579889662468-0/bqsr1-r2.fq
/tmp/adamTestMvnM5Ay7Lc/1579889662468-0/bqsr1-r2.fq/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/1579889662468-0/bqsr1-r2.fq/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/1579889662468-0/bqsr1-r2.fq/part-00000
/tmp/adamTestMvnM5Ay7Lc/1579889662468-0/bqsr1-r2.fq/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/1579889662468-0/bqsr1-r1.fq
/tmp/adamTestMvnM5Ay7Lc/1579889662468-0/bqsr1-r1.fq/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/1579889662468-0/bqsr1-r1.fq/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/1579889662468-0/bqsr1-r1.fq/part-00000
/tmp/adamTestMvnM5Ay7Lc/1579889662468-0/bqsr1-r1.fq/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5579504590470700056.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite5579504590470700056.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite5579504590470700056.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite5579504590470700056.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5579504590470700056.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5579504590470700056.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite5579504590470700056.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite5579504590470700056.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5579504590470700056.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite5579504590470700056.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5579504590470700056.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite5579504590470700056.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5579504590470700056.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite5579504590470700056.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite5579504590470700056.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5579504590470700056.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite5579504590470700056.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5579504590470700056.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5579504590470700056.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/1093253778779948967
/tmp/adamTestMvnM5Ay7Lc/1093253778779948967/tag.sam
/tmp/adamTestMvnM5Ay7Lc/1093253778779948967/.tag.sam.crc
/tmp/adamTestMvnM5Ay7Lc/.TempSuite5548813476643098713.sam.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite96412952476319969
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite1901110930458257278
/tmp/adamTestMvnM5Ay7Lc/TempSuite3108321716988983711
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite7591294342199543754.adam
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite7591294342199543754.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite7591294342199543754.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite7591294342199543754.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite7591294342199543754.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite7591294342199543754.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite7591294342199543754.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite7591294342199543754.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite7591294342199543754.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite7591294342199543754.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite7591294342199543754.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite7591294342199543754.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite7591294342199543754.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite7591294342199543754.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite7591294342199543754.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite7591294342199543754.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite7591294342199543754.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/small.vcf4669989289502720455.vcf
/tmp/adamTestMvnM5Ay7Lc/TempSuite400100353057894231
/tmp/adamTestMvnM5Ay7Lc/TempSuite6244119142150754862.fq
/tmp/adamTestMvnM5Ay7Lc/TempSuite6244119142150754862.fq/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6244119142150754862.fq/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite6244119142150754862.fq/part-00000
/tmp/adamTestMvnM5Ay7Lc/TempSuite6244119142150754862.fq/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3428357704866171227_2.fq
/tmp/adamTestMvnM5Ay7Lc/TempSuite3428357704866171227_2.fq/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3428357704866171227_2.fq/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite3428357704866171227_2.fq/part-00000
/tmp/adamTestMvnM5Ay7Lc/TempSuite3428357704866171227_2.fq/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4133115391743467270
/tmp/adamTestMvnM5Ay7Lc/adam-cli.TransformFeaturesSuite3212505884807204599.adam
/tmp/adamTestMvnM5Ay7Lc/adam-cli.TransformFeaturesSuite3212505884807204599.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/adam-cli.TransformFeaturesSuite3212505884807204599.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/adam-cli.TransformFeaturesSuite3212505884807204599.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/adam-cli.TransformFeaturesSuite3212505884807204599.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/adam-cli.TransformFeaturesSuite3212505884807204599.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/adam-cli.TransformFeaturesSuite3212505884807204599.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/adam-cli.TransformFeaturesSuite3212505884807204599.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/adam-cli.TransformFeaturesSuite3212505884807204599.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/adam-cli.TransformFeaturesSuite3212505884807204599.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/adam-cli.TransformFeaturesSuite3212505884807204599.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/adam-cli.TransformFeaturesSuite3212505884807204599.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/adam-cli.TransformFeaturesSuite3212505884807204599.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7148000987893407271.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite7148000987893407271.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite7148000987893407271.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7148000987893407271.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7148000987893407271.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite7148000987893407271.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite7148000987893407271.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite7148000987893407271.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite7148000987893407271.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7148000987893407271.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7148000987893407271.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite7148000987893407271.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite7148000987893407271.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7148000987893407271.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7148000987893407271.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite6996368049607306247
/tmp/adamTestMvnM5Ay7Lc/TempSuite1822700925718214623
/tmp/adamTestMvnM5Ay7Lc/TempSuite7281300950672827087.bam
/tmp/adamTestMvnM5Ay7Lc/TempSuite7281300950672827087.bam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite7281300950672827087.bam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7281300950672827087.bam/.part-r-00000.bam.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7281300950672827087.bam/part-r-00000.bam
/tmp/adamTestMvnM5Ay7Lc/TempSuite817120178482340901.bed
/tmp/adamTestMvnM5Ay7Lc/TempSuite817120178482340901.bed/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite817120178482340901.bed/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite817120178482340901.bed/part-00000
/tmp/adamTestMvnM5Ay7Lc/TempSuite817120178482340901.bed/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8801869228831268521
/tmp/adamTestMvnM5Ay7Lc/TempSuite4153893406942636294
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite5413582838736557287.adam
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite5413582838736557287.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite5413582838736557287.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite5413582838736557287.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite5413582838736557287.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite5413582838736557287.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite5413582838736557287.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite5413582838736557287.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite5413582838736557287.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite5413582838736557287.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite5413582838736557287.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite5413582838736557287.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite5413582838736557287.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite5413582838736557287.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite5413582838736557287.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite5413582838736557287.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite5413582838736557287.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6975650900453331853
/tmp/adamTestMvnM5Ay7Lc/TempSuite13095299096375573
/tmp/adamTestMvnM5Ay7Lc/TempSuite5919379882942865875.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite5919379882942865875.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5919379882942865875.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite5919379882942865875.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite5919379882942865875.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite5919379882942865875.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5919379882942865875.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5919379882942865875.adam/part-00000-ec5a2dc4-c38d-4e0c-9de6-a63337d300d2-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite5919379882942865875.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5919379882942865875.adam/_header
/tmp/adamTestMvnM5Ay7Lc/TempSuite5919379882942865875.adam/.part-00000-ec5a2dc4-c38d-4e0c-9de6-a63337d300d2-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite783981372989572371
/tmp/adamTestMvnM5Ay7Lc/TempSuite4160305003115693169
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite2201682165117160290
/tmp/adamTestMvnM5Ay7Lc/TempSuite1567336495159598162.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite1567336495159598162.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1567336495159598162.adam/part-00000-1e9ab5cb-531c-4d09-9932-03e1fc33ee85-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite1567336495159598162.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite1567336495159598162.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite1567336495159598162.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite1567336495159598162.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1567336495159598162.adam/.part-00000-1e9ab5cb-531c-4d09-9932-03e1fc33ee85-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1567336495159598162.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1567336495159598162.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1567336495159598162.adam/_header
/tmp/adamTestMvnM5Ay7Lc/4418985362223392420
/tmp/adamTestMvnM5Ay7Lc/4418985362223392420/sorted-variants.vcf
/tmp/adamTestMvnM5Ay7Lc/4418985362223392420/.sorted-variants.vcf.crc
/tmp/adamTestMvnM5Ay7Lc/unordered.sam751434697299752383.sam
/tmp/adamTestMvnM5Ay7Lc/TempSuite2239234711259057538.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite2239234711259057538.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite2239234711259057538.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2239234711259057538.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite2239234711259057538.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite2239234711259057538.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2239234711259057538.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2239234711259057538.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite2239234711259057538.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite2239234711259057538.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite2239234711259057538.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2239234711259057538.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2239234711259057538.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2239234711259057538.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2239234711259057538.adam/_header
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite3857542652837627196.gff3
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite3857542652837627196.gff3/.part-00003.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite3857542652837627196.gff3/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite3857542652837627196.gff3/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite3857542652837627196.gff3/part-00003
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite3857542652837627196.gff3/part-00000
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite3857542652837627196.gff3/part-00002
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite3857542652837627196.gff3/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite3857542652837627196.gff3/.part-00002.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite3857542652837627196.gff3/part-00001
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite3857542652837627196.gff3/.part-00001.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2926502168970302213
/tmp/adamTestMvnM5Ay7Lc/random.vcf720578376467454606.vcf
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5774989155003964911.gtf
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5774989155003964911.gtf/.part-00003.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5774989155003964911.gtf/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5774989155003964911.gtf/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5774989155003964911.gtf/part-00003
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5774989155003964911.gtf/part-00000
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5774989155003964911.gtf/part-00002
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5774989155003964911.gtf/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5774989155003964911.gtf/.part-00002.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5774989155003964911.gtf/part-00001
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5774989155003964911.gtf/.part-00001.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5237852474843808229.bed
/tmp/adamTestMvnM5Ay7Lc/TempSuite5237852474843808229.bed/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5237852474843808229.bed/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite5237852474843808229.bed/part-00000
/tmp/adamTestMvnM5Ay7Lc/TempSuite5237852474843808229.bed/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3118772697266254194.bam
/tmp/adamTestMvnM5Ay7Lc/TempSuite3118772697266254194.bam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite3118772697266254194.bam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3118772697266254194.bam/.part-r-00000.bam.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3118772697266254194.bam/part-r-00000.bam
/tmp/adamTestMvnM5Ay7Lc/TempSuite8501910885139080006
/tmp/adamTestMvnM5Ay7Lc/TempSuite4436358730258332047
/tmp/adamTestMvnM5Ay7Lc/TempSuite1686936149552986786
/tmp/adamTestMvnM5Ay7Lc/TempSuite4815292435493389479.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite4815292435493389479.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite4815292435493389479.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4815292435493389479.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite4815292435493389479.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite4815292435493389479.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4815292435493389479.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4815292435493389479.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite4815292435493389479.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite4815292435493389479.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite4815292435493389479.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4815292435493389479.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4815292435493389479.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4815292435493389479.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4815292435493389479.adam/_header
/tmp/adamTestMvnM5Ay7Lc/javaAC6709891337563022179
/tmp/adamTestMvnM5Ay7Lc/javaAC6709891337563022179/testRdd.slices.adam
/tmp/adamTestMvnM5Ay7Lc/javaAC6709891337563022179/testRdd.slices.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/javaAC6709891337563022179/testRdd.slices.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC6709891337563022179/testRdd.slices.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/javaAC6709891337563022179/testRdd.slices.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/javaAC6709891337563022179/testRdd.slices.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC6709891337563022179/testRdd.slices.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC6709891337563022179/testRdd.slices.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/javaAC6709891337563022179/testRdd.slices.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/javaAC6709891337563022179/testRdd.slices.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC6709891337563022179/testRdd.slices.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/unordered.sam7550839701932215930.sam
/tmp/adamTestMvnM5Ay7Lc/TempSuite6507703936205546863.bed
/tmp/adamTestMvnM5Ay7Lc/TempSuite6507703936205546863.bed/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6507703936205546863.bed/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite6507703936205546863.bed/part-00000
/tmp/adamTestMvnM5Ay7Lc/TempSuite6507703936205546863.bed/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4932814294522474608
/tmp/adamTestMvnM5Ay7Lc/TempSuite2039742785991482162reads12.sam_2
/tmp/adamTestMvnM5Ay7Lc/unordered.sam3132402106068039027.sam
/tmp/adamTestMvnM5Ay7Lc/TempSuite1841308944776992336.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite1841308944776992336.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite1841308944776992336.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite1841308944776992336.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1841308944776992336.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1841308944776992336.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite1841308944776992336.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite1841308944776992336.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1841308944776992336.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite1841308944776992336.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1841308944776992336.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite1841308944776992336.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1841308944776992336.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite1841308944776992336.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite1841308944776992336.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1841308944776992336.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite1841308944776992336.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1841308944776992336.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1841308944776992336.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8818760712842413206
/tmp/adamTestMvnM5Ay7Lc/random.vcf8708047093914515614.vcf
/tmp/adamTestMvnM5Ay7Lc/TempSuite6056149123789509464
/tmp/adamTestMvnM5Ay7Lc/unordered.sam5493150743583477758.sam
/tmp/adamTestMvnM5Ay7Lc/TempSuite8707383672507922330.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite8707383672507922330.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite8707383672507922330.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite8707383672507922330.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8707383672507922330.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8707383672507922330.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite8707383672507922330.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite8707383672507922330.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8707383672507922330.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite8707383672507922330.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8707383672507922330.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite8707383672507922330.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8707383672507922330.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite8707383672507922330.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite8707383672507922330.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8707383672507922330.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite8707383672507922330.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8707383672507922330.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8707383672507922330.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6015576984120607610.bed
/tmp/adamTestMvnM5Ay7Lc/TempSuite6015576984120607610.bed/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6015576984120607610.bed/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite6015576984120607610.bed/part-00000
/tmp/adamTestMvnM5Ay7Lc/TempSuite6015576984120607610.bed/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4959711671269259117
/tmp/adamTestMvnM5Ay7Lc/TempSuite1534228957722732495.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite1534228957722732495.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite1534228957722732495.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1534228957722732495.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite1534228957722732495.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite1534228957722732495.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1534228957722732495.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1534228957722732495.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite1534228957722732495.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite1534228957722732495.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1534228957722732495.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1534228957722732495.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1534228957722732495.adam/_header
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite2107607954188933861.narrowPeak
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite2107607954188933861.narrowPeak/.part-00003.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite2107607954188933861.narrowPeak/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite2107607954188933861.narrowPeak/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite2107607954188933861.narrowPeak/part-00003
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite2107607954188933861.narrowPeak/part-00000
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite2107607954188933861.narrowPeak/part-00002
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite2107607954188933861.narrowPeak/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite2107607954188933861.narrowPeak/.part-00002.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite2107607954188933861.narrowPeak/part-00001
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite2107607954188933861.narrowPeak/.part-00001.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC6816808822610934344
/tmp/adamTestMvnM5Ay7Lc/javaAC6816808822610934344/testRdd.fragment.adam
/tmp/adamTestMvnM5Ay7Lc/javaAC6816808822610934344/testRdd.fragment.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/javaAC6816808822610934344/testRdd.fragment.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC6816808822610934344/testRdd.fragment.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC6816808822610934344/testRdd.fragment.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/javaAC6816808822610934344/testRdd.fragment.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/javaAC6816808822610934344/testRdd.fragment.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/javaAC6816808822610934344/testRdd.fragment.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/javaAC6816808822610934344/testRdd.fragment.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC6816808822610934344/testRdd.fragment.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC6816808822610934344/testRdd.fragment.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/javaAC6816808822610934344/testRdd.fragment.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/javaAC6816808822610934344/testRdd.fragment.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC6816808822610934344/testRdd.fragment.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC6816808822610934344/testRdd.fragment.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8123522562713481864
/tmp/adamTestMvnM5Ay7Lc/TempSuite8783624855377370512.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite8783624855377370512.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite8783624855377370512.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8783624855377370512.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite8783624855377370512.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite8783624855377370512.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8783624855377370512.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8783624855377370512.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite8783624855377370512.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite8783624855377370512.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8783624855377370512.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8783624855377370512.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8783624855377370512.adam/_header
/tmp/adamTestMvnM5Ay7Lc/TempSuite4242793239669630489
/tmp/adamTestMvnM5Ay7Lc/TempSuite3512769134250270024.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite3512769134250270024.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite3512769134250270024.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3512769134250270024.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite3512769134250270024.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite3512769134250270024.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3512769134250270024.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3512769134250270024.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite3512769134250270024.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite3512769134250270024.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3512769134250270024.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3512769134250270024.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3512769134250270024.adam/_header
/tmp/adamTestMvnM5Ay7Lc/TempSuite1464843627534855319.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite1464843627534855319.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1464843627534855319.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite1464843627534855319.adam/_partitionedByStartPos
/tmp/adamTestMvnM5Ay7Lc/TempSuite1464843627534855319.adam/referenceName=1
/tmp/adamTestMvnM5Ay7Lc/TempSuite1464843627534855319.adam/referenceName=1/positionBin=0
/tmp/adamTestMvnM5Ay7Lc/TempSuite1464843627534855319.adam/referenceName=1/positionBin=0/.part-00000-aaf7cbac-96f0-4cd4-ad80-6f91be1372da.c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1464843627534855319.adam/referenceName=1/positionBin=0/part-00000-aaf7cbac-96f0-4cd4-ad80-6f91be1372da.c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite1464843627534855319.adam/referenceName=1/positionBin=169
/tmp/adamTestMvnM5Ay7Lc/TempSuite1464843627534855319.adam/referenceName=1/positionBin=169/.part-00001-aaf7cbac-96f0-4cd4-ad80-6f91be1372da.c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1464843627534855319.adam/referenceName=1/positionBin=169/part-00001-aaf7cbac-96f0-4cd4-ad80-6f91be1372da.c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite1464843627534855319.adam/referenceName=1/positionBin=14
/tmp/adamTestMvnM5Ay7Lc/TempSuite1464843627534855319.adam/referenceName=1/positionBin=14/.part-00000-aaf7cbac-96f0-4cd4-ad80-6f91be1372da.c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1464843627534855319.adam/referenceName=1/positionBin=14/part-00000-aaf7cbac-96f0-4cd4-ad80-6f91be1372da.c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite1464843627534855319.adam/referenceName=1/positionBin=240
/tmp/adamTestMvnM5Ay7Lc/TempSuite1464843627534855319.adam/referenceName=1/positionBin=240/.part-00002-aaf7cbac-96f0-4cd4-ad80-6f91be1372da.c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1464843627534855319.adam/referenceName=1/positionBin=240/part-00002-aaf7cbac-96f0-4cd4-ad80-6f91be1372da.c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite1464843627534855319.adam/._partitionedByStartPos.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1464843627534855319.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite1464843627534855319.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite1464843627534855319.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1464843627534855319.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8545884378054737001.bam
/tmp/adamTestMvnM5Ay7Lc/TempSuite8545884378054737001.bam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite8545884378054737001.bam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8545884378054737001.bam/.part-r-00000.bam.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8545884378054737001.bam/part-r-00000.bam
/tmp/adamTestMvnM5Ay7Lc/TempSuite882522356049021938
/tmp/adamTestMvnM5Ay7Lc/TempSuite7559133306350085625.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite7559133306350085625.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7559133306350085625.adam/.part-00000-3ff4cfe0-3f70-4fe3-b146-076bd2f7307e-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7559133306350085625.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite7559133306350085625.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite7559133306350085625.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7559133306350085625.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7559133306350085625.adam/_header
/tmp/adamTestMvnM5Ay7Lc/TempSuite7559133306350085625.adam/part-00000-3ff4cfe0-3f70-4fe3-b146-076bd2f7307e-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite9088839156329130557.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite9088839156329130557.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite9088839156329130557.adam/part-00000-938db047-5ea5-4275-bcc2-926bf00f1c78-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite9088839156329130557.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite9088839156329130557.adam/.part-00000-938db047-5ea5-4275-bcc2-926bf00f1c78-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite9088839156329130557.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite9088839156329130557.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5988087826705722706
/tmp/adamTestMvnM5Ay7Lc/TempSuite6272198440934859202
/tmp/adamTestMvnM5Ay7Lc/TempSuite345471085818943053
/tmp/adamTestMvnM5Ay7Lc/TempSuite712928857563911558.bed
/tmp/adamTestMvnM5Ay7Lc/TempSuite712928857563911558.bed/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite712928857563911558.bed/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite712928857563911558.bed/part-00000
/tmp/adamTestMvnM5Ay7Lc/TempSuite712928857563911558.bed/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite4570549200403753153
/tmp/adamTestMvnM5Ay7Lc/TempSuite4060335142936727092
/tmp/adamTestMvnM5Ay7Lc/ordered.sam3076001710820693287.sam
/tmp/adamTestMvnM5Ay7Lc/TempSuite2207457772977498642.bam
/tmp/adamTestMvnM5Ay7Lc/TempSuite2207457772977498642.bam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite2207457772977498642.bam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2207457772977498642.bam/.part-r-00000.bam.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2207457772977498642.bam/part-r-00000.bam
/tmp/adamTestMvnM5Ay7Lc/TempSuite2569468847347313869.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite2569468847347313869.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite2569468847347313869.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2569468847347313869.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite2569468847347313869.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite2569468847347313869.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2569468847347313869.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2569468847347313869.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite2569468847347313869.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite2569468847347313869.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2569468847347313869.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2569468847347313869.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2569468847347313869.adam/_header
/tmp/adamTestMvnM5Ay7Lc/TempSuite8782693449685288538
/tmp/adamTestMvnM5Ay7Lc/TempSuite499254542358062845
/tmp/adamTestMvnM5Ay7Lc/TempSuite4539411314546626112
/tmp/adamTestMvnM5Ay7Lc/TempSuite4353916129197243884.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite4353916129197243884.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4353916129197243884.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite4353916129197243884.adam/.part-00000-e1a4c4b2-885b-4026-837c-e94a11f864cc-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4353916129197243884.adam/part-00000-e1a4c4b2-885b-4026-837c-e94a11f864cc-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite4353916129197243884.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite4353916129197243884.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite4353916129197243884.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4353916129197243884.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4353916129197243884.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4353916129197243884.adam/_header
/tmp/adamTestMvnM5Ay7Lc/TempSuite2862378373119902629.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite2862378373119902629.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite2862378373119902629.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite2862378373119902629.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2862378373119902629.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2862378373119902629.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2862378373119902629.adam/._partitionMap.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2862378373119902629.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite2862378373119902629.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite2862378373119902629.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite2862378373119902629.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite2862378373119902629.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2862378373119902629.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite2862378373119902629.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2862378373119902629.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite2862378373119902629.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2862378373119902629.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite2862378373119902629.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2862378373119902629.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite2862378373119902629.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2862378373119902629.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2862378373119902629.adam/_partitionMap.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite2862378373119902629.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite1423146254413890501
/tmp/adamTestMvnM5Ay7Lc/TempSuite5385535421081168149
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite4405830068673749785
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite2105734354008517232
/tmp/adamTestMvnM5Ay7Lc/TempSuite8432420323600056328.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite8432420323600056328.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite8432420323600056328.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8432420323600056328.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite8432420323600056328.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite8432420323600056328.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8432420323600056328.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8432420323600056328.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite8432420323600056328.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite8432420323600056328.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite8432420323600056328.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8432420323600056328.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8432420323600056328.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8432420323600056328.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8432420323600056328.adam/_header
/tmp/adamTestMvnM5Ay7Lc/TempSuite9217804160954376329
/tmp/adamTestMvnM5Ay7Lc/TempSuite2991788054250763385
/tmp/adamTestMvnM5Ay7Lc/TempSuite7472825535108840323
/tmp/adamTestMvnM5Ay7Lc/TempSuite3046464430641329338.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite3046464430641329338.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite3046464430641329338.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3046464430641329338.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite3046464430641329338.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite3046464430641329338.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3046464430641329338.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3046464430641329338.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite3046464430641329338.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite3046464430641329338.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3046464430641329338.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3046464430641329338.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3046464430641329338.adam/_header
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite6662137159121725016
/tmp/adamTestMvnM5Ay7Lc/TempSuite8545884378054737001
/tmp/adamTestMvnM5Ay7Lc/TempSuite8923642106816063034
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite8029791675296009667
/tmp/adamTestMvnM5Ay7Lc/TempSuite4797703495458660465
/tmp/adamTestMvnM5Ay7Lc/TempSuite1335456511709004265
/tmp/adamTestMvnM5Ay7Lc/.FeatureDatasetFunctionsSuite7992812054296435115.bed.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7050423802727854956
/tmp/adamTestMvnM5Ay7Lc/TempSuite1082734937740639893_1.fq
/tmp/adamTestMvnM5Ay7Lc/1579889617059-0
/tmp/adamTestMvnM5Ay7Lc/1579889617059-0/bqsr1-r2.fq
/tmp/adamTestMvnM5Ay7Lc/1579889617059-0/bqsr1-r2.fq/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/1579889617059-0/bqsr1-r2.fq/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/1579889617059-0/bqsr1-r2.fq/part-00000
/tmp/adamTestMvnM5Ay7Lc/1579889617059-0/bqsr1-r2.fq/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/1579889617059-0/bqsr1-r1.fq
/tmp/adamTestMvnM5Ay7Lc/1579889617059-0/bqsr1-r1.fq/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/1579889617059-0/bqsr1-r1.fq/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/1579889617059-0/bqsr1-r1.fq/part-00000
/tmp/adamTestMvnM5Ay7Lc/1579889617059-0/bqsr1-r1.fq/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite943106470552479125
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite7176645935424080655.gtf
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite7176645935424080655.gtf/.part-00003.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite7176645935424080655.gtf/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite7176645935424080655.gtf/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite7176645935424080655.gtf/part-00003
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite7176645935424080655.gtf/part-00000
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite7176645935424080655.gtf/part-00002
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite7176645935424080655.gtf/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite7176645935424080655.gtf/.part-00002.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite7176645935424080655.gtf/part-00001
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite7176645935424080655.gtf/.part-00001.crc
/tmp/adamTestMvnM5Ay7Lc/unordered.sam4418767027726995286.sam
/tmp/adamTestMvnM5Ay7Lc/TempSuite5572749934952809653
/tmp/adamTestMvnM5Ay7Lc/TempSuite8219288057024843711
/tmp/adamTestMvnM5Ay7Lc/TempSuite8079983689485764021
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite4000697563068190325.gff3
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite4000697563068190325.gff3/.part-00003.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite4000697563068190325.gff3/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite4000697563068190325.gff3/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite4000697563068190325.gff3/part-00003
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite4000697563068190325.gff3/part-00000
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite4000697563068190325.gff3/part-00002
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite4000697563068190325.gff3/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite4000697563068190325.gff3/.part-00002.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite4000697563068190325.gff3/part-00001
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite4000697563068190325.gff3/.part-00001.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1320913334754922333.bed
/tmp/adamTestMvnM5Ay7Lc/TempSuite1320913334754922333.bed/.part-00003.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1320913334754922333.bed/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1320913334754922333.bed/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite1320913334754922333.bed/part-00003
/tmp/adamTestMvnM5Ay7Lc/TempSuite1320913334754922333.bed/part-00000
/tmp/adamTestMvnM5Ay7Lc/TempSuite1320913334754922333.bed/part-00002
/tmp/adamTestMvnM5Ay7Lc/TempSuite1320913334754922333.bed/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1320913334754922333.bed/.part-00002.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1320913334754922333.bed/part-00001
/tmp/adamTestMvnM5Ay7Lc/TempSuite1320913334754922333.bed/.part-00001.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite6564249339868194701.bed
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite6564249339868194701.bed/.part-00003.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite6564249339868194701.bed/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite6564249339868194701.bed/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite6564249339868194701.bed/part-00003
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite6564249339868194701.bed/part-00000
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite6564249339868194701.bed/part-00002
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite6564249339868194701.bed/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite6564249339868194701.bed/.part-00002.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite6564249339868194701.bed/part-00001
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite6564249339868194701.bed/.part-00001.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite716172655034611881
/tmp/adamTestMvnM5Ay7Lc/TempSuite2155143432807666777
/tmp/adamTestMvnM5Ay7Lc/TempSuite3515236325310965084
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite6584865748228292182
/tmp/adamTestMvnM5Ay7Lc/TempSuite208035839783668478
/tmp/adamTestMvnM5Ay7Lc/TempSuite3019137215343141869.fq
/tmp/adamTestMvnM5Ay7Lc/TempSuite3019137215343141869.fq/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3019137215343141869.fq/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite3019137215343141869.fq/part-00000
/tmp/adamTestMvnM5Ay7Lc/TempSuite3019137215343141869.fq/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/7719420254359535407
/tmp/adamTestMvnM5Ay7Lc/7719420254359535407/.out.bam_head.crc
/tmp/adamTestMvnM5Ay7Lc/7719420254359535407/.out.bam.crc
/tmp/adamTestMvnM5Ay7Lc/7719420254359535407/out.bam_tail
/tmp/adamTestMvnM5Ay7Lc/7719420254359535407/out.bam_tail/.part-r-00003.bam.crc
/tmp/adamTestMvnM5Ay7Lc/7719420254359535407/out.bam_tail/.part-r-00002.bam.crc
/tmp/adamTestMvnM5Ay7Lc/7719420254359535407/out.bam_tail/part-r-00002.bam
/tmp/adamTestMvnM5Ay7Lc/7719420254359535407/out.bam_tail/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/7719420254359535407/out.bam_tail/.part-r-00001.bam.crc
/tmp/adamTestMvnM5Ay7Lc/7719420254359535407/out.bam_tail/part-r-00003.bam
/tmp/adamTestMvnM5Ay7Lc/7719420254359535407/out.bam_tail/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/7719420254359535407/out.bam_tail/.part-r-00000.bam.crc
/tmp/adamTestMvnM5Ay7Lc/7719420254359535407/out.bam_tail/part-r-00000.bam
/tmp/adamTestMvnM5Ay7Lc/7719420254359535407/out.bam_tail/part-r-00001.bam
/tmp/adamTestMvnM5Ay7Lc/7719420254359535407/out.bam
/tmp/adamTestMvnM5Ay7Lc/7719420254359535407/out.bam_head
/tmp/adamTestMvnM5Ay7Lc/.TempSuite6511879042912946828.sam.crc
/tmp/adamTestMvnM5Ay7Lc/.TempSuite1830463049191087740.sam.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3606735933722867368
/tmp/adamTestMvnM5Ay7Lc/TempSuite6773680373375942765
/tmp/adamTestMvnM5Ay7Lc/TempSuite6032751085888644942
/tmp/adamTestMvnM5Ay7Lc/TempSuite5312561044086927897
/tmp/adamTestMvnM5Ay7Lc/TempSuite2336458819208989828.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite2336458819208989828.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite2336458819208989828.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2336458819208989828.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite2336458819208989828.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite2336458819208989828.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2336458819208989828.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2336458819208989828.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite2336458819208989828.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite2336458819208989828.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2336458819208989828.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/ordered.sam985504889827648645.sam
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite399683138963348035
/tmp/adamTestMvnM5Ay7Lc/small.vcf1067963936690560384.vcf
/tmp/adamTestMvnM5Ay7Lc/TempSuite4077508315365203371
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite6564249339868194701
/tmp/adamTestMvnM5Ay7Lc/3699418586501093646
/tmp/adamTestMvnM5Ay7Lc/3699418586501093646/out.cram_tail
/tmp/adamTestMvnM5Ay7Lc/3699418586501093646/out.cram_tail/.part-r-00003.cram.crc
/tmp/adamTestMvnM5Ay7Lc/3699418586501093646/out.cram_tail/.part-r-00001.cram.crc
/tmp/adamTestMvnM5Ay7Lc/3699418586501093646/out.cram_tail/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/3699418586501093646/out.cram_tail/.part-r-00000.cram.crc
/tmp/adamTestMvnM5Ay7Lc/3699418586501093646/out.cram_tail/part-r-00003.cram
/tmp/adamTestMvnM5Ay7Lc/3699418586501093646/out.cram_tail/part-r-00000.cram
/tmp/adamTestMvnM5Ay7Lc/3699418586501093646/out.cram_tail/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/3699418586501093646/out.cram_tail/part-r-00002.cram
/tmp/adamTestMvnM5Ay7Lc/3699418586501093646/out.cram_tail/part-r-00001.cram
/tmp/adamTestMvnM5Ay7Lc/3699418586501093646/out.cram_tail/.part-r-00002.cram.crc
/tmp/adamTestMvnM5Ay7Lc/3699418586501093646/.out.cram.crc
/tmp/adamTestMvnM5Ay7Lc/3699418586501093646/out.cram_head
/tmp/adamTestMvnM5Ay7Lc/3699418586501093646/.out.cram_head.crc
/tmp/adamTestMvnM5Ay7Lc/3699418586501093646/out.cram
/tmp/adamTestMvnM5Ay7Lc/TempSuite7302128525213288881.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite7302128525213288881.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite7302128525213288881.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7302128525213288881.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite7302128525213288881.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite7302128525213288881.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7302128525213288881.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7302128525213288881.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite7302128525213288881.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite7302128525213288881.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7302128525213288881.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2190396881965008272
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite6395663085296967740
/tmp/adamTestMvnM5Ay7Lc/TempSuite73212314211718488.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite73212314211718488.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite73212314211718488.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite73212314211718488.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite73212314211718488.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite73212314211718488.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite73212314211718488.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite73212314211718488.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite73212314211718488.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite73212314211718488.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite73212314211718488.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite73212314211718488.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite73212314211718488.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite73212314211718488.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite73212314211718488.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite73212314211718488.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite73212314211718488.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite73212314211718488.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite73212314211718488.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite73212314211718488.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite73212314211718488.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7564147960968203101_2.fq
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite8372516318200512316
/tmp/adamTestMvnM5Ay7Lc/bqsr1.sam1896209913612893910.sam
/tmp/adamTestMvnM5Ay7Lc/TempSuite8525690273560425031
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite5191297622413666125.adam
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite5191297622413666125.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite5191297622413666125.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite5191297622413666125.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite5191297622413666125.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite5191297622413666125.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite5191297622413666125.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite5191297622413666125.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite5191297622413666125.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite5191297622413666125.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite5191297622413666125.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite5191297622413666125.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite5191297622413666125.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite5191297622413666125.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite5191297622413666125.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite5191297622413666125.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite5191297622413666125.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/sorted-variants.lex.vcf4096390936848188060.lex.vcf
/tmp/adamTestMvnM5Ay7Lc/.TempSuite653267127126796823.bam.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1802611304161028348.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite1802611304161028348.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1802611304161028348.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite1802611304161028348.adam/part-00000-1a9cd377-186e-4fc0-a156-25dd881ee5da-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite1802611304161028348.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite1802611304161028348.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite1802611304161028348.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1802611304161028348.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1802611304161028348.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1802611304161028348.adam/_header
/tmp/adamTestMvnM5Ay7Lc/TempSuite1802611304161028348.adam/.part-00000-1a9cd377-186e-4fc0-a156-25dd881ee5da-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite9205970760855506983.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite9205970760855506983.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite9205970760855506983.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite9205970760855506983.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite9205970760855506983.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite9205970760855506983.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite9205970760855506983.adam/._partitionMap.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite9205970760855506983.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite9205970760855506983.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite9205970760855506983.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite9205970760855506983.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite9205970760855506983.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite9205970760855506983.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite9205970760855506983.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite9205970760855506983.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite9205970760855506983.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite9205970760855506983.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite9205970760855506983.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite9205970760855506983.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite9205970760855506983.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite9205970760855506983.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite9205970760855506983.adam/_partitionMap.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite9205970760855506983.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite4778781338993203806.gtf
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite4778781338993203806.gtf/.part-00003.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite4778781338993203806.gtf/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite4778781338993203806.gtf/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite4778781338993203806.gtf/part-00003
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite4778781338993203806.gtf/part-00000
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite4778781338993203806.gtf/part-00002
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite4778781338993203806.gtf/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite4778781338993203806.gtf/.part-00002.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite4778781338993203806.gtf/part-00001
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite4778781338993203806.gtf/.part-00001.crc
/tmp/adamTestMvnM5Ay7Lc/7131908248020737241
/tmp/adamTestMvnM5Ay7Lc/7131908248020737241/unordered.adam
/tmp/adamTestMvnM5Ay7Lc/7131908248020737241/unordered.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/7131908248020737241/unordered.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/7131908248020737241/unordered.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/7131908248020737241/unordered.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/7131908248020737241/unordered.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/7131908248020737241/unordered.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/7131908248020737241/unordered.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/7131908248020737241/unordered.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/7131908248020737241/unordered.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/7131908248020737241/unordered.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/7131908248020737241/unordered.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/7131908248020737241/unordered.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/7131908248020737241/unordered.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/7131908248020737241/unordered.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7805064312028989794.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite7805064312028989794.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite7805064312028989794.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7805064312028989794.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7805064312028989794.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite7805064312028989794.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite7805064312028989794.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite7805064312028989794.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite7805064312028989794.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7805064312028989794.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7805064312028989794.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite7805064312028989794.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite7805064312028989794.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7805064312028989794.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7805064312028989794.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/6600163842816342943
/tmp/adamTestMvnM5Ay7Lc/6600163842816342943/unordered.adam
/tmp/adamTestMvnM5Ay7Lc/6600163842816342943/unordered.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/6600163842816342943/unordered.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/6600163842816342943/unordered.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/6600163842816342943/unordered.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/6600163842816342943/unordered.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/6600163842816342943/unordered.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/6600163842816342943/unordered.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/6600163842816342943/unordered.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/6600163842816342943/unordered.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/6600163842816342943/unordered.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/6600163842816342943/unordered.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/6600163842816342943/unordered.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/6600163842816342943/unordered.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/6600163842816342943/unordered.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1649453076502620276
/tmp/adamTestMvnM5Ay7Lc/TempSuite1385743233192804770.bed
/tmp/adamTestMvnM5Ay7Lc/TempSuite1385743233192804770.bed/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1385743233192804770.bed/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite1385743233192804770.bed/part-00000
/tmp/adamTestMvnM5Ay7Lc/TempSuite1385743233192804770.bed/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1686936149552986786.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite1686936149552986786.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1686936149552986786.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1686936149552986786.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite1686936149552986786.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite1686936149552986786.adam/part-00000-513abece-4ce7-43e5-8d0d-d053b8d3c082-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite1686936149552986786.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite1686936149552986786.adam/part-00001-513abece-4ce7-43e5-8d0d-d053b8d3c082-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite1686936149552986786.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite1686936149552986786.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1686936149552986786.adam/.part-00000-513abece-4ce7-43e5-8d0d-d053b8d3c082-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1686936149552986786.adam/.part-00002-513abece-4ce7-43e5-8d0d-d053b8d3c082-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1686936149552986786.adam/.part-00001-513abece-4ce7-43e5-8d0d-d053b8d3c082-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1686936149552986786.adam/part-00002-513abece-4ce7-43e5-8d0d-d053b8d3c082-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite1686936149552986786.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/1461826556290931024
/tmp/adamTestMvnM5Ay7Lc/1461826556290931024/unordered.sam
/tmp/adamTestMvnM5Ay7Lc/1461826556290931024/.unordered.sam.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8583074804026798013
/tmp/adamTestMvnM5Ay7Lc/TempSuite1335456511709004265.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite1335456511709004265.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1335456511709004265.adam/.part-00000-d629b62e-e958-4326-87e8-4cb87c415700-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1335456511709004265.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite1335456511709004265.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite1335456511709004265.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite1335456511709004265.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1335456511709004265.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1335456511709004265.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1335456511709004265.adam/_header
/tmp/adamTestMvnM5Ay7Lc/TempSuite1335456511709004265.adam/part-00000-d629b62e-e958-4326-87e8-4cb87c415700-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite1591272129952838186
/tmp/adamTestMvnM5Ay7Lc/unordered.sam6011176403931379603.sam
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite1568939438230235209
/tmp/adamTestMvnM5Ay7Lc/.FeatureDatasetFunctionsSuite783981372989572371.narrowPeak.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite516034957941730445
/tmp/adamTestMvnM5Ay7Lc/TempSuite1984296910567305598
/tmp/adamTestMvnM5Ay7Lc/hg19.chrM.2bit5906880608897569775.chrM.2bit
/tmp/adamTestMvnM5Ay7Lc/TempSuite6602111502671344631
/tmp/adamTestMvnM5Ay7Lc/TempSuite6936644737977719107.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite6936644737977719107.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6936644737977719107.adam/.part-00001-6a245355-ed89-4fb7-bb9c-add9f787aae1-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6936644737977719107.adam/part-00000-6a245355-ed89-4fb7-bb9c-add9f787aae1-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite6936644737977719107.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6936644737977719107.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite6936644737977719107.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite6936644737977719107.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite6936644737977719107.adam/.part-00002-6a245355-ed89-4fb7-bb9c-add9f787aae1-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6936644737977719107.adam/part-00001-6a245355-ed89-4fb7-bb9c-add9f787aae1-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite6936644737977719107.adam/.part-00000-6a245355-ed89-4fb7-bb9c-add9f787aae1-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6936644737977719107.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite6936644737977719107.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6936644737977719107.adam/part-00002-6a245355-ed89-4fb7-bb9c-add9f787aae1-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite6936644737977719107.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4797703495458660465.bed
/tmp/adamTestMvnM5Ay7Lc/TempSuite4797703495458660465.bed/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4797703495458660465.bed/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite4797703495458660465.bed/part-00000
/tmp/adamTestMvnM5Ay7Lc/TempSuite4797703495458660465.bed/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1780584441123602044.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite1780584441123602044.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite1780584441123602044.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1780584441123602044.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite1780584441123602044.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite1780584441123602044.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1780584441123602044.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1780584441123602044.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite1780584441123602044.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite1780584441123602044.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite1780584441123602044.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1780584441123602044.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1780584441123602044.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1780584441123602044.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1780584441123602044.adam/_header
/tmp/adamTestMvnM5Ay7Lc/TempSuite4880509820756659953.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite4880509820756659953.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite4880509820756659953.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite4880509820756659953.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4880509820756659953.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4880509820756659953.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite4880509820756659953.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite4880509820756659953.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4880509820756659953.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite4880509820756659953.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4880509820756659953.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite4880509820756659953.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4880509820756659953.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite4880509820756659953.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite4880509820756659953.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4880509820756659953.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite4880509820756659953.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4880509820756659953.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4880509820756659953.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4880509820756659953.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4880509820756659953.adam/_header
/tmp/adamTestMvnM5Ay7Lc/trinity.fa5636424474075799663.fa
/tmp/adamTestMvnM5Ay7Lc/TempSuite9033767574848546759.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite9033767574848546759.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite9033767574848546759.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite9033767574848546759.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite9033767574848546759.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite9033767574848546759.adam/.part-00000-28227438-6b24-43e6-bc5b-9326ea084260-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite9033767574848546759.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite9033767574848546759.adam/part-00000-28227438-6b24-43e6-bc5b-9326ea084260-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite9033767574848546759.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite9033767574848546759.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite9033767574848546759.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5205085863888692323
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite7637589031785450247
/tmp/adamTestMvnM5Ay7Lc/1004438215914074355
/tmp/adamTestMvnM5Ay7Lc/1004438215914074355/unordered.adam
/tmp/adamTestMvnM5Ay7Lc/1004438215914074355/unordered.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/1004438215914074355/unordered.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/1004438215914074355/unordered.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/1004438215914074355/unordered.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/1004438215914074355/unordered.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/1004438215914074355/unordered.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/1004438215914074355/unordered.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/1004438215914074355/unordered.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/1004438215914074355/unordered.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/1004438215914074355/unordered.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/1004438215914074355/unordered.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/1004438215914074355/unordered.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/1004438215914074355/unordered.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/1004438215914074355/unordered.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6695600941637509350
/tmp/adamTestMvnM5Ay7Lc/TempSuite9033767574848546759
/tmp/adamTestMvnM5Ay7Lc/TempSuite405306005631624545
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite3132713250019624777
/tmp/adamTestMvnM5Ay7Lc/TempSuite6633288712505299920.bed
/tmp/adamTestMvnM5Ay7Lc/TempSuite6633288712505299920.bed/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6633288712505299920.bed/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite6633288712505299920.bed/part-00000
/tmp/adamTestMvnM5Ay7Lc/TempSuite6633288712505299920.bed/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite332768735421145939.sam
/tmp/adamTestMvnM5Ay7Lc/TempSuite332768735421145939.sam/part-r-00000.sam
/tmp/adamTestMvnM5Ay7Lc/TempSuite332768735421145939.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite332768735421145939.sam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite332768735421145939.sam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite2107607954188933861
/tmp/adamTestMvnM5Ay7Lc/TempSuite8920141385293783682
/tmp/adamTestMvnM5Ay7Lc/TempSuite1961264101699776476
/tmp/adamTestMvnM5Ay7Lc/TempSuite4436358730258332047.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite4436358730258332047.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite4436358730258332047.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite4436358730258332047.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4436358730258332047.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4436358730258332047.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite4436358730258332047.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite4436358730258332047.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4436358730258332047.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite4436358730258332047.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4436358730258332047.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite4436358730258332047.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4436358730258332047.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite4436358730258332047.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite4436358730258332047.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4436358730258332047.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite4436358730258332047.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4436358730258332047.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4436358730258332047.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite334396046165623214
/tmp/adamTestMvnM5Ay7Lc/TempSuite9037869520807850185.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite9037869520807850185.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite9037869520807850185.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite9037869520807850185.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite9037869520807850185.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite9037869520807850185.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite9037869520807850185.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite9037869520807850185.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite9037869520807850185.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite9037869520807850185.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite9037869520807850185.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite9037869520807850185.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite9037869520807850185.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite9037869520807850185.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite9037869520807850185.adam/_header
/tmp/adamTestMvnM5Ay7Lc/TempSuite3688805867373189442.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite3688805867373189442.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite3688805867373189442.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3688805867373189442.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite3688805867373189442.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite3688805867373189442.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3688805867373189442.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3688805867373189442.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite3688805867373189442.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite3688805867373189442.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite3688805867373189442.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3688805867373189442.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3688805867373189442.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3688805867373189442.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3688805867373189442.adam/_header
/tmp/adamTestMvnM5Ay7Lc/TempSuite4810034869379443026
/tmp/adamTestMvnM5Ay7Lc/bqsr1.sam3348826474531991483.sam
/tmp/adamTestMvnM5Ay7Lc/TempSuite3092375116587289251.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite3092375116587289251.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite3092375116587289251.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3092375116587289251.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3092375116587289251.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite3092375116587289251.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite3092375116587289251.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite3092375116587289251.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite3092375116587289251.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3092375116587289251.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3092375116587289251.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite3092375116587289251.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite3092375116587289251.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3092375116587289251.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3092375116587289251.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/unsorted.sam6720384670156878410.sam
/tmp/adamTestMvnM5Ay7Lc/TempSuite7390795219664813390
/tmp/adamTestMvnM5Ay7Lc/TempSuite601886597140822011.sam
/tmp/adamTestMvnM5Ay7Lc/TempSuite499254542358062845.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite499254542358062845.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite499254542358062845.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite499254542358062845.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite499254542358062845.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite499254542358062845.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite499254542358062845.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite499254542358062845.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite499254542358062845.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite499254542358062845.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite499254542358062845.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite499254542358062845.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite499254542358062845.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite499254542358062845.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite499254542358062845.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8061698477383387576
/tmp/adamTestMvnM5Ay7Lc/TempSuite4815292435493389479
/tmp/adamTestMvnM5Ay7Lc/TempSuite8265279000172237625
/tmp/adamTestMvnM5Ay7Lc/TempSuite3092375116587289251
/tmp/adamTestMvnM5Ay7Lc/TempSuite2487591329971180611.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite2487591329971180611.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite2487591329971180611.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2487591329971180611.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite2487591329971180611.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite2487591329971180611.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2487591329971180611.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2487591329971180611.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite2487591329971180611.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite2487591329971180611.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite2487591329971180611.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2487591329971180611.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2487591329971180611.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2487591329971180611.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2487591329971180611.adam/_header
/tmp/adamTestMvnM5Ay7Lc/TempSuite1185744647362486243_1.fq
/tmp/adamTestMvnM5Ay7Lc/TempSuite1185744647362486243_1.fq/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1185744647362486243_1.fq/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite1185744647362486243_1.fq/part-00000
/tmp/adamTestMvnM5Ay7Lc/TempSuite1185744647362486243_1.fq/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4812694812976344375
/tmp/adamTestMvnM5Ay7Lc/TempSuite601886597140822011
/tmp/adamTestMvnM5Ay7Lc/406899552880508889
/tmp/adamTestMvnM5Ay7Lc/406899552880508889/binned.adam
/tmp/adamTestMvnM5Ay7Lc/406899552880508889/binned.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/406899552880508889/binned.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/406899552880508889/binned.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/406899552880508889/binned.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/406899552880508889/binned.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/406899552880508889/binned.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/406899552880508889/binned.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/406899552880508889/binned.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/406899552880508889/binned.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/406899552880508889/binned.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/406899552880508889/binned.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/406899552880508889/binned.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/406899552880508889/binned.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/406899552880508889/binned.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/.TempSuite8363332262244355706.bam.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7042365568243850671
/tmp/adamTestMvnM5Ay7Lc/TempSuite851838798742417557
/tmp/adamTestMvnM5Ay7Lc/4442764777042425200
/tmp/adamTestMvnM5Ay7Lc/4442764777042425200/genotypes.adam
/tmp/adamTestMvnM5Ay7Lc/4442764777042425200/genotypes.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/4442764777042425200/genotypes.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/4442764777042425200/genotypes.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/4442764777042425200/genotypes.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/4442764777042425200/genotypes.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/4442764777042425200/genotypes.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/4442764777042425200/genotypes.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/4442764777042425200/genotypes.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/4442764777042425200/genotypes.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/4442764777042425200/genotypes.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/4442764777042425200/genotypes.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/4442764777042425200/genotypes.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/4442764777042425200/genotypes.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/4442764777042425200/genotypes.adam/_header
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5774989155003964911
/tmp/adamTestMvnM5Ay7Lc/TempSuite6244119142150754862
/tmp/adamTestMvnM5Ay7Lc/TempSuite584012923144801058.fa
/tmp/adamTestMvnM5Ay7Lc/TempSuite584012923144801058.fa/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite584012923144801058.fa/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite584012923144801058.fa/part-00000
/tmp/adamTestMvnM5Ay7Lc/TempSuite584012923144801058.fa/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4330051022329662887.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite4330051022329662887.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite4330051022329662887.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4330051022329662887.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4330051022329662887.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite4330051022329662887.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite4330051022329662887.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite4330051022329662887.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite4330051022329662887.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4330051022329662887.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4330051022329662887.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite4330051022329662887.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite4330051022329662887.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4330051022329662887.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4330051022329662887.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5470017757762088063
/tmp/adamTestMvnM5Ay7Lc/TempSuite7482788218295794894_1.fq
/tmp/adamTestMvnM5Ay7Lc/TempSuite5233961647871245269.sam
/tmp/adamTestMvnM5Ay7Lc/TempSuite5233961647871245269.sam/part-r-00000.sam
/tmp/adamTestMvnM5Ay7Lc/TempSuite5233961647871245269.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5233961647871245269.sam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite5233961647871245269.sam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite5191297622413666125
/tmp/adamTestMvnM5Ay7Lc/TempSuite4451670161049621892
/tmp/adamTestMvnM5Ay7Lc/TempSuite73212314211718488
/tmp/adamTestMvnM5Ay7Lc/8140836577260758947
/tmp/adamTestMvnM5Ay7Lc/8140836577260758947/bqsr1.vcf.bgz
/tmp/adamTestMvnM5Ay7Lc/8140836577260758947/bqsr1.vcf.bgz/part-r-00000.bgz
/tmp/adamTestMvnM5Ay7Lc/8140836577260758947/bqsr1.vcf.bgz/.part-r-00000.bgz.crc
/tmp/adamTestMvnM5Ay7Lc/8140836577260758947/bqsr1.vcf.bgz/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/8140836577260758947/bqsr1.vcf.bgz/.part-r-00003.bgz.crc
/tmp/adamTestMvnM5Ay7Lc/8140836577260758947/bqsr1.vcf.bgz/part-r-00001.bgz
/tmp/adamTestMvnM5Ay7Lc/8140836577260758947/bqsr1.vcf.bgz/part-r-00003.bgz
/tmp/adamTestMvnM5Ay7Lc/8140836577260758947/bqsr1.vcf.bgz/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/8140836577260758947/bqsr1.vcf.bgz/part-r-00002.bgz
/tmp/adamTestMvnM5Ay7Lc/8140836577260758947/bqsr1.vcf.bgz/.part-r-00002.bgz.crc
/tmp/adamTestMvnM5Ay7Lc/8140836577260758947/bqsr1.vcf.bgz/.part-r-00001.bgz.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite366944407610055887.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite366944407610055887.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite366944407610055887.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite366944407610055887.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite366944407610055887.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite366944407610055887.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite366944407610055887.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite366944407610055887.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite366944407610055887.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite366944407610055887.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite366944407610055887.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite366944407610055887.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite366944407610055887.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite366944407610055887.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite366944407610055887.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite366944407610055887.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite366944407610055887.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite366944407610055887.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite366944407610055887.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite366944407610055887.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite366944407610055887.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1612561079601262848.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite1612561079601262848.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1612561079601262848.adam/part-00000-59857fa7-fa52-48b6-9d66-d86e6125712a-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite1612561079601262848.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite1612561079601262848.adam/.part-00000-59857fa7-fa52-48b6-9d66-d86e6125712a-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1612561079601262848.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite1612561079601262848.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1612561079601262848.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1612561079601262848.adam/_header
/tmp/adamTestMvnM5Ay7Lc/TempSuite190915648442210845.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite190915648442210845.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite190915648442210845.adam/.part-00000-97114290-4c0c-47f0-ba3f-d06a07311768-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite190915648442210845.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite190915648442210845.adam/part-00000-97114290-4c0c-47f0-ba3f-d06a07311768-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite190915648442210845.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite190915648442210845.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite353257072368870048.fasta
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite1621050859479025177.bed
/tmp/adamTestMvnM5Ay7Lc/TempSuite4932814294522474608.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite4932814294522474608.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite4932814294522474608.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4932814294522474608.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4932814294522474608.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite4932814294522474608.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite4932814294522474608.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite4932814294522474608.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite4932814294522474608.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4932814294522474608.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4932814294522474608.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite4932814294522474608.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite4932814294522474608.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4932814294522474608.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4932814294522474608.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8804042815252733346
/tmp/adamTestMvnM5Ay7Lc/TempSuite8501910885139080006.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite8501910885139080006.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite8501910885139080006.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8501910885139080006.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8501910885139080006.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite8501910885139080006.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite8501910885139080006.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite8501910885139080006.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite8501910885139080006.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8501910885139080006.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8501910885139080006.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite8501910885139080006.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite8501910885139080006.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8501910885139080006.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8501910885139080006.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite817120178482340901
/tmp/adamTestMvnM5Ay7Lc/trinity.fa3564649221645148748.fa
/tmp/adamTestMvnM5Ay7Lc/4619759123451325849
/tmp/adamTestMvnM5Ay7Lc/4619759123451325849/coverage.adam
/tmp/adamTestMvnM5Ay7Lc/4619759123451325849/coverage.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/4619759123451325849/coverage.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/4619759123451325849/coverage.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/4619759123451325849/coverage.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/4619759123451325849/coverage.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/4619759123451325849/coverage.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/4619759123451325849/coverage.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/4619759123451325849/coverage.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/4619759123451325849/coverage.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/4619759123451325849/coverage.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/4619759123451325849/coverage.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/4619759123451325849/coverage.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite7224382560753393656.adam
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite7224382560753393656.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite7224382560753393656.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite7224382560753393656.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite7224382560753393656.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite7224382560753393656.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite7224382560753393656.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite7224382560753393656.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite7224382560753393656.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite7224382560753393656.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite7224382560753393656.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite7224382560753393656.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite7224382560753393656.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite7224382560753393656.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite7224382560753393656.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite7224382560753393656.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite7224382560753393656.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4187613941894914209.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite4187613941894914209.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite4187613941894914209.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4187613941894914209.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite4187613941894914209.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite4187613941894914209.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4187613941894914209.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4187613941894914209.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite4187613941894914209.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite4187613941894914209.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite4187613941894914209.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4187613941894914209.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4187613941894914209.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4187613941894914209.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4187613941894914209.adam/_header
/tmp/adamTestMvnM5Ay7Lc/TempSuite2926502168970302213.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite2926502168970302213.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite2926502168970302213.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2926502168970302213.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2926502168970302213.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite2926502168970302213.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite2926502168970302213.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite2926502168970302213.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite2926502168970302213.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2926502168970302213.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2926502168970302213.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite2926502168970302213.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite2926502168970302213.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2926502168970302213.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2926502168970302213.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6826019403277894926
/tmp/adamTestMvnM5Ay7Lc/TempSuite9205970760855506983
/tmp/adamTestMvnM5Ay7Lc/TempSuite3197342355424837265
/tmp/adamTestMvnM5Ay7Lc/TempSuite7559133306350085625
/tmp/adamTestMvnM5Ay7Lc/TempSuite6230452215500629533.fq
/tmp/adamTestMvnM5Ay7Lc/TempSuite5778357815299011044_2.fq
/tmp/adamTestMvnM5Ay7Lc/TempSuite5778357815299011044_2.fq/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5778357815299011044_2.fq/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite5778357815299011044_2.fq/part-00000
/tmp/adamTestMvnM5Ay7Lc/TempSuite5778357815299011044_2.fq/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8608397091003482442
/tmp/adamTestMvnM5Ay7Lc/TempSuite5169752932505084282
/tmp/adamTestMvnM5Ay7Lc/TempSuite4886088247186697449
/tmp/adamTestMvnM5Ay7Lc/TempSuite1822714218602115821.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite1822714218602115821.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite1822714218602115821.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1822714218602115821.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite1822714218602115821.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite1822714218602115821.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1822714218602115821.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1822714218602115821.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite1822714218602115821.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite1822714218602115821.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1822714218602115821.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1822714218602115821.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1822714218602115821.adam/_header
/tmp/adamTestMvnM5Ay7Lc/TempSuite4077508315365203371.fa
/tmp/adamTestMvnM5Ay7Lc/TempSuite4077508315365203371.fa/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4077508315365203371.fa/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite4077508315365203371.fa/part-00000
/tmp/adamTestMvnM5Ay7Lc/TempSuite4077508315365203371.fa/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4060335142936727092.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite4060335142936727092.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite4060335142936727092.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4060335142936727092.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite4060335142936727092.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite4060335142936727092.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4060335142936727092.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4060335142936727092.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite4060335142936727092.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite4060335142936727092.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite4060335142936727092.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4060335142936727092.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4060335142936727092.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4060335142936727092.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4060335142936727092.adam/_header
/tmp/adamTestMvnM5Ay7Lc/TempSuite3066593043108929523.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite3066593043108929523.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite3066593043108929523.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite3066593043108929523.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3066593043108929523.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3066593043108929523.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3066593043108929523.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite3066593043108929523.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite3066593043108929523.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite3066593043108929523.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite3066593043108929523.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3066593043108929523.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite3066593043108929523.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3066593043108929523.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite3066593043108929523.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3066593043108929523.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite3066593043108929523.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3066593043108929523.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite3066593043108929523.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3066593043108929523.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3066593043108929523.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5539532798051381277
/tmp/adamTestMvnM5Ay7Lc/TempSuite7042365568243850671_2.fq
/tmp/adamTestMvnM5Ay7Lc/TempSuite7042365568243850671_2.fq/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7042365568243850671_2.fq/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite7042365568243850671_2.fq/part-00000
/tmp/adamTestMvnM5Ay7Lc/TempSuite7042365568243850671_2.fq/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7050423802727854956.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite7050423802727854956.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7050423802727854956.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite7050423802727854956.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite7050423802727854956.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7050423802727854956.adam/.part-00000-5276566d-6b21-46d5-9978-38e5ba15d3e7-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7050423802727854956.adam/part-00000-5276566d-6b21-46d5-9978-38e5ba15d3e7-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite186989323293338764
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite1423146254413890501.bed
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite1423146254413890501.bed/.part-00003.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite1423146254413890501.bed/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite1423146254413890501.bed/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite1423146254413890501.bed/part-00003
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite1423146254413890501.bed/part-00000
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite1423146254413890501.bed/part-00002
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite1423146254413890501.bed/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite1423146254413890501.bed/.part-00002.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite1423146254413890501.bed/part-00001
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite1423146254413890501.bed/.part-00001.crc
/tmp/adamTestMvnM5Ay7Lc/bqsr1881070312378276156
/tmp/adamTestMvnM5Ay7Lc/bqsr1881070312378276156/.bqsr1.sam.crc
/tmp/adamTestMvnM5Ay7Lc/bqsr1881070312378276156/bqsr1.sam
/tmp/adamTestMvnM5Ay7Lc/TempSuite1830463049191087740
/tmp/adamTestMvnM5Ay7Lc/TempSuite3108321716988983711fragments.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite3108321716988983711fragments.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite3108321716988983711fragments.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3108321716988983711fragments.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3108321716988983711fragments.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite3108321716988983711fragments.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite3108321716988983711fragments.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite3108321716988983711fragments.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite3108321716988983711fragments.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3108321716988983711fragments.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3108321716988983711fragments.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite3108321716988983711fragments.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite3108321716988983711fragments.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3108321716988983711fragments.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3108321716988983711fragments.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite13095299096375573.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite13095299096375573.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite13095299096375573.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite13095299096375573.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite13095299096375573.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite13095299096375573.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite13095299096375573.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite13095299096375573.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite13095299096375573.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite13095299096375573.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite13095299096375573.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite13095299096375573.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite13095299096375573.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite13095299096375573.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite13095299096375573.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1814687887654886140
/tmp/adamTestMvnM5Ay7Lc/TempSuite6430184365950984143
/tmp/adamTestMvnM5Ay7Lc/.TempSuite601886597140822011.sam.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite163443561641084006
/tmp/adamTestMvnM5Ay7Lc/TempSuite4632875388283055255.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite4632875388283055255.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4632875388283055255.adam/part-00000-26a8f451-1eb1-4312-8f9d-741cba4b67d6-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite4632875388283055255.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite4632875388283055255.adam/.part-00000-26a8f451-1eb1-4312-8f9d-741cba4b67d6-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4632875388283055255.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite4632875388283055255.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4632875388283055255.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4632875388283055255.adam/_header
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite4605715262143837070
/tmp/adamTestMvnM5Ay7Lc/TempSuite584012923144801058
/tmp/adamTestMvnM5Ay7Lc/TempSuite6054217365621723993
/tmp/adamTestMvnM5Ay7Lc/TempSuite8700750861310909298.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite8700750861310909298.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite8700750861310909298.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8700750861310909298.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8700750861310909298.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite8700750861310909298.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite8700750861310909298.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite8700750861310909298.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite8700750861310909298.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8700750861310909298.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8700750861310909298.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite8700750861310909298.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite8700750861310909298.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8700750861310909298.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8700750861310909298.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7442877020124325984.sam
/tmp/adamTestMvnM5Ay7Lc/TempSuite7442877020124325984.sam/part-r-00000.sam
/tmp/adamTestMvnM5Ay7Lc/TempSuite7442877020124325984.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7442877020124325984.sam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite7442877020124325984.sam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3197342355424837265.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite3197342355424837265.adam/.part-00000-86d87758-c007-4f92-a80a-677751dd4b8c-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3197342355424837265.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3197342355424837265.adam/.part-00001-86d87758-c007-4f92-a80a-677751dd4b8c-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3197342355424837265.adam/.part-00002-86d87758-c007-4f92-a80a-677751dd4b8c-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3197342355424837265.adam/part-00000-86d87758-c007-4f92-a80a-677751dd4b8c-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite3197342355424837265.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite3197342355424837265.adam/part-00002-86d87758-c007-4f92-a80a-677751dd4b8c-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite3197342355424837265.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite3197342355424837265.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3197342355424837265.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3197342355424837265.adam/_header
/tmp/adamTestMvnM5Ay7Lc/TempSuite3197342355424837265.adam/part-00001-86d87758-c007-4f92-a80a-677751dd4b8c-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite1481177712191988721
/tmp/adamTestMvnM5Ay7Lc/artificial.sam2589619132667916099.sam
/tmp/adamTestMvnM5Ay7Lc/TempSuite550197185929708880
/tmp/adamTestMvnM5Ay7Lc/TempSuite2290959703849057749
/tmp/adamTestMvnM5Ay7Lc/reads127737900659717031941
/tmp/adamTestMvnM5Ay7Lc/reads127737900659717031941/reads12.fq
/tmp/adamTestMvnM5Ay7Lc/reads127737900659717031941/reads12.fq/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/reads127737900659717031941/reads12.fq/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/reads127737900659717031941/reads12.fq/part-00000
/tmp/adamTestMvnM5Ay7Lc/reads127737900659717031941/reads12.fq/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8061698477383387576.fq
/tmp/adamTestMvnM5Ay7Lc/TempSuite8061698477383387576.fq/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8061698477383387576.fq/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite8061698477383387576.fq/part-00000
/tmp/adamTestMvnM5Ay7Lc/TempSuite8061698477383387576.fq/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/2121263179224456054
/tmp/adamTestMvnM5Ay7Lc/2121263179224456054/ordered.sam
/tmp/adamTestMvnM5Ay7Lc/2121263179224456054/.ordered.sam.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6064850638995818306
/tmp/adamTestMvnM5Ay7Lc/TempSuite8233277161072085620.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite8233277161072085620.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite8233277161072085620.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8233277161072085620.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8233277161072085620.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite8233277161072085620.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite8233277161072085620.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite8233277161072085620.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite8233277161072085620.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8233277161072085620.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8233277161072085620.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite8233277161072085620.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite8233277161072085620.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8233277161072085620.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8233277161072085620.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/1579889038449-0
/tmp/adamTestMvnM5Ay7Lc/1579889038449-0/test.vcf
/tmp/adamTestMvnM5Ay7Lc/1579889038449-0/test.vcf/.part-r-00000.crc
/tmp/adamTestMvnM5Ay7Lc/1579889038449-0/test.vcf/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/1579889038449-0/test.vcf/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/1579889038449-0/test.vcf/part-r-00000
/tmp/adamTestMvnM5Ay7Lc/1579889038449-0/test_single.vcf
/tmp/adamTestMvnM5Ay7Lc/1579889038449-0/.test_single.vcf.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8108379686393182105
/tmp/adamTestMvnM5Ay7Lc/TempSuite7921808434574380539.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite7921808434574380539.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite7921808434574380539.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7921808434574380539.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7921808434574380539.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite7921808434574380539.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite7921808434574380539.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite7921808434574380539.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite7921808434574380539.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7921808434574380539.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7921808434574380539.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite7921808434574380539.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite7921808434574380539.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7921808434574380539.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7921808434574380539.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite2601503089772728699.adam
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite2601503089772728699.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite2601503089772728699.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite2601503089772728699.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite2601503089772728699.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite2601503089772728699.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite2601503089772728699.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite2601503089772728699.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite2601503089772728699.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite2601503089772728699.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite2601503089772728699.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite2601503089772728699.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite2601503089772728699.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite2601503089772728699.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite2601503089772728699.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite2601503089772728699.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite2601503089772728699.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7503722279959419250
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite3581640220218038560
/tmp/adamTestMvnM5Ay7Lc/TempSuite6460216781141403242.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite6460216781141403242.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite6460216781141403242.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite6460216781141403242.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6460216781141403242.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6460216781141403242.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite6460216781141403242.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite6460216781141403242.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6460216781141403242.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite6460216781141403242.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6460216781141403242.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite6460216781141403242.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6460216781141403242.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite6460216781141403242.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite6460216781141403242.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6460216781141403242.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite6460216781141403242.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6460216781141403242.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6460216781141403242.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2817877458039590183
/tmp/adamTestMvnM5Ay7Lc/.TempSuite6773680373375942765.sam.crc
/tmp/adamTestMvnM5Ay7Lc/141203830726712475
/tmp/adamTestMvnM5Ay7Lc/141203830726712475/unordered.sam
/tmp/adamTestMvnM5Ay7Lc/141203830726712475/.unordered.sam.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5457094156310203975.narrowPeak
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5457094156310203975.narrowPeak/.part-00003.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5457094156310203975.narrowPeak/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5457094156310203975.narrowPeak/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5457094156310203975.narrowPeak/part-00003
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5457094156310203975.narrowPeak/part-00000
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5457094156310203975.narrowPeak/part-00002
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5457094156310203975.narrowPeak/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5457094156310203975.narrowPeak/.part-00002.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5457094156310203975.narrowPeak/part-00001
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite5457094156310203975.narrowPeak/.part-00001.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7465817188099677293
/tmp/adamTestMvnM5Ay7Lc/8550319198667040530
/tmp/adamTestMvnM5Ay7Lc/8550319198667040530/bqsr1.vcf.bgz
/tmp/adamTestMvnM5Ay7Lc/8550319198667040530/bqsr1.vcf.bgz/part-r-00000.bgz
/tmp/adamTestMvnM5Ay7Lc/8550319198667040530/bqsr1.vcf.bgz/.part-r-00000.bgz.crc
/tmp/adamTestMvnM5Ay7Lc/8550319198667040530/bqsr1.vcf.bgz/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/8550319198667040530/bqsr1.vcf.bgz/.part-r-00003.bgz.crc
/tmp/adamTestMvnM5Ay7Lc/8550319198667040530/bqsr1.vcf.bgz/part-r-00001.bgz
/tmp/adamTestMvnM5Ay7Lc/8550319198667040530/bqsr1.vcf.bgz/part-r-00003.bgz
/tmp/adamTestMvnM5Ay7Lc/8550319198667040530/bqsr1.vcf.bgz/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/8550319198667040530/bqsr1.vcf.bgz/part-r-00002.bgz
/tmp/adamTestMvnM5Ay7Lc/8550319198667040530/bqsr1.vcf.bgz/.part-r-00002.bgz.crc
/tmp/adamTestMvnM5Ay7Lc/8550319198667040530/bqsr1.vcf.bgz/.part-r-00001.bgz.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7593922567881203483.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite7593922567881203483.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite7593922567881203483.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7593922567881203483.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite7593922567881203483.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite7593922567881203483.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7593922567881203483.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7593922567881203483.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite7593922567881203483.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite7593922567881203483.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite7593922567881203483.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7593922567881203483.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7593922567881203483.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7593922567881203483.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7593922567881203483.adam/_header
/tmp/adamTestMvnM5Ay7Lc/TempSuite888010868824520678.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite888010868824520678.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite888010868824520678.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite888010868824520678.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite888010868824520678.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite888010868824520678.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite888010868824520678.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite888010868824520678.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite888010868824520678.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite888010868824520678.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite888010868824520678.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite888010868824520678.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite888010868824520678.adam/_header
/tmp/adamTestMvnM5Ay7Lc/TempSuite7514876536719646864
/tmp/adamTestMvnM5Ay7Lc/TempSuite7698183775510390509.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite7698183775510390509.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite7698183775510390509.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7698183775510390509.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7698183775510390509.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite7698183775510390509.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite7698183775510390509.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite7698183775510390509.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite7698183775510390509.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7698183775510390509.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7698183775510390509.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite7698183775510390509.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite7698183775510390509.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7698183775510390509.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7698183775510390509.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/sample_coverage.bed4692681750411735674.bed
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite4570549200403753153.gtf
/tmp/adamTestMvnM5Ay7Lc/artificial.sam678422795224295047.sam
/tmp/adamTestMvnM5Ay7Lc/TempSuite7555215795754841648.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite7555215795754841648.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite7555215795754841648.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7555215795754841648.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7555215795754841648.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite7555215795754841648.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite7555215795754841648.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite7555215795754841648.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite7555215795754841648.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7555215795754841648.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7555215795754841648.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite7555215795754841648.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite7555215795754841648.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7555215795754841648.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7555215795754841648.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3238282691157396710.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite3238282691157396710.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite3238282691157396710.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3238282691157396710.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3238282691157396710.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite3238282691157396710.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite3238282691157396710.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite3238282691157396710.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite3238282691157396710.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3238282691157396710.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3238282691157396710.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite3238282691157396710.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite3238282691157396710.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3238282691157396710.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3238282691157396710.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/.FeatureDatasetFunctionsSuite4570549200403753153.gtf.crc
/tmp/adamTestMvnM5Ay7Lc/1014174127618140406
/tmp/adamTestMvnM5Ay7Lc/1014174127618140406/ordered.sam
/tmp/adamTestMvnM5Ay7Lc/1014174127618140406/.ordered.sam.crc
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite6142134640211626625.adam
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite6142134640211626625.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite6142134640211626625.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite6142134640211626625.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite6142134640211626625.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite6142134640211626625.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite6142134640211626625.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite6142134640211626625.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite6142134640211626625.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite6142134640211626625.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite6142134640211626625.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite6142134640211626625.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite6142134640211626625.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite6142134640211626625.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite6142134640211626625.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite6142134640211626625.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/SequenceDatasetSuite6142134640211626625.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/noqual1792843698001830787
/tmp/adamTestMvnM5Ay7Lc/noqual1792843698001830787/noqualB.fastq
/tmp/adamTestMvnM5Ay7Lc/noqual1792843698001830787/noqualB.fastq/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/noqual1792843698001830787/noqualB.fastq/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/noqual1792843698001830787/noqualB.fastq/part-00000
/tmp/adamTestMvnM5Ay7Lc/noqual1792843698001830787/noqualB.fastq/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/noqual1792843698001830787/noqualA.sam
/tmp/adamTestMvnM5Ay7Lc/noqual1792843698001830787/noqualA.sam/part-r-00000.sam
/tmp/adamTestMvnM5Ay7Lc/noqual1792843698001830787/noqualA.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnM5Ay7Lc/noqual1792843698001830787/noqualA.sam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/noqual1792843698001830787/noqualA.sam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7837855509004501401
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite3390118422372235904
/tmp/adamTestMvnM5Ay7Lc/TempSuite4353916129197243884
/tmp/adamTestMvnM5Ay7Lc/TempSuite5233961647871245269
/tmp/adamTestMvnM5Ay7Lc/TempSuite2336458819208989828
/tmp/adamTestMvnM5Ay7Lc/TempSuite3836893072382028296
/tmp/adamTestMvnM5Ay7Lc/6917111385820715132
/tmp/adamTestMvnM5Ay7Lc/6917111385820715132/unordered.sam
/tmp/adamTestMvnM5Ay7Lc/6917111385820715132/.unordered.sam.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3391470900537032042.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite3391470900537032042.adam/.part-00002-0e70bf28-0301-42c1-aa75-11378d638a67-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3391470900537032042.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3391470900537032042.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite3391470900537032042.adam/.part-00001-0e70bf28-0301-42c1-aa75-11378d638a67-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3391470900537032042.adam/part-00000-0e70bf28-0301-42c1-aa75-11378d638a67-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite3391470900537032042.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite3391470900537032042.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3391470900537032042.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3391470900537032042.adam/_header
/tmp/adamTestMvnM5Ay7Lc/TempSuite3391470900537032042.adam/part-00001-0e70bf28-0301-42c1-aa75-11378d638a67-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite3391470900537032042.adam/part-00002-0e70bf28-0301-42c1-aa75-11378d638a67-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite3391470900537032042.adam/.part-00000-0e70bf28-0301-42c1-aa75-11378d638a67-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2637436796587053335
/tmp/adamTestMvnM5Ay7Lc/TempSuite7248683513010702218
/tmp/adamTestMvnM5Ay7Lc/TempSuite3238282691157396710
/tmp/adamTestMvnM5Ay7Lc/TempSuite7828476689555588024
/tmp/adamTestMvnM5Ay7Lc/TempSuite1773196825715022289
/tmp/adamTestMvnM5Ay7Lc/TempSuite6640292839872327366.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite6640292839872327366.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6640292839872327366.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6640292839872327366.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite6640292839872327366.adam/part-00000-ecc6eaa2-a1a0-4d78-aa43-81b1e2b4a66d-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite6640292839872327366.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite6640292839872327366.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite6640292839872327366.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite6640292839872327366.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6640292839872327366.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6640292839872327366.adam/.part-00000-ecc6eaa2-a1a0-4d78-aa43-81b1e2b4a66d-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC5466127966559906532
/tmp/adamTestMvnM5Ay7Lc/javaAC5466127966559906532/testRdd.variant.adam
/tmp/adamTestMvnM5Ay7Lc/javaAC5466127966559906532/testRdd.variant.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/javaAC5466127966559906532/testRdd.variant.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC5466127966559906532/testRdd.variant.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/javaAC5466127966559906532/testRdd.variant.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/javaAC5466127966559906532/testRdd.variant.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC5466127966559906532/testRdd.variant.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC5466127966559906532/testRdd.variant.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/javaAC5466127966559906532/testRdd.variant.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/javaAC5466127966559906532/testRdd.variant.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC5466127966559906532/testRdd.variant.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC5466127966559906532/testRdd.variant.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC5466127966559906532/testRdd.variant.adam/_header
/tmp/adamTestMvnM5Ay7Lc/TempSuite5091187749948580904.vcf
/tmp/adamTestMvnM5Ay7Lc/TempSuite5091187749948580904.vcf/.part-r-00000.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5091187749948580904.vcf/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite5091187749948580904.vcf/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5091187749948580904.vcf/part-r-00000
/tmp/adamTestMvnM5Ay7Lc/TempSuite8923740784068153783.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite8923740784068153783.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite8923740784068153783.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8923740784068153783.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8923740784068153783.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite8923740784068153783.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite8923740784068153783.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite8923740784068153783.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite8923740784068153783.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8923740784068153783.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8923740784068153783.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite8923740784068153783.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite8923740784068153783.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8923740784068153783.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8923740784068153783.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8608397091003482442.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite8608397091003482442.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8608397091003482442.adam/part-00003-937fb7fe-775d-4f3a-8d38-cf068123f4ba-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite8608397091003482442.adam/part-00005-937fb7fe-775d-4f3a-8d38-cf068123f4ba-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite8608397091003482442.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite8608397091003482442.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite8608397091003482442.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite8608397091003482442.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8608397091003482442.adam/.part-00003-937fb7fe-775d-4f3a-8d38-cf068123f4ba-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8608397091003482442.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8608397091003482442.adam/.part-00000-937fb7fe-775d-4f3a-8d38-cf068123f4ba-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8608397091003482442.adam/.part-00005-937fb7fe-775d-4f3a-8d38-cf068123f4ba-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8608397091003482442.adam/part-00000-937fb7fe-775d-4f3a-8d38-cf068123f4ba-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite1464843627534855319
/tmp/adamTestMvnM5Ay7Lc/.SequenceDatasetSuite5177602475816421109.fasta.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7148000987893407271
/tmp/adamTestMvnM5Ay7Lc/5449792803809381796
/tmp/adamTestMvnM5Ay7Lc/5449792803809381796/sorted.vcf
/tmp/adamTestMvnM5Ay7Lc/5449792803809381796/.sorted.vcf.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8172507408083679668
/tmp/adamTestMvnM5Ay7Lc/TempSuite5615064392449620474.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite5615064392449620474.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5615064392449620474.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite5615064392449620474.adam/_partitionedByStartPos
/tmp/adamTestMvnM5Ay7Lc/TempSuite5615064392449620474.adam/referenceName=1
/tmp/adamTestMvnM5Ay7Lc/TempSuite5615064392449620474.adam/referenceName=1/positionBin=0
/tmp/adamTestMvnM5Ay7Lc/TempSuite5615064392449620474.adam/referenceName=1/positionBin=0/part-00000-011e936e-e806-4371-858c-7adf841ba361.c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite5615064392449620474.adam/referenceName=1/positionBin=0/.part-00000-011e936e-e806-4371-858c-7adf841ba361.c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5615064392449620474.adam/referenceName=1/positionBin=169
/tmp/adamTestMvnM5Ay7Lc/TempSuite5615064392449620474.adam/referenceName=1/positionBin=169/.part-00001-011e936e-e806-4371-858c-7adf841ba361.c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5615064392449620474.adam/referenceName=1/positionBin=169/part-00001-011e936e-e806-4371-858c-7adf841ba361.c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite5615064392449620474.adam/referenceName=1/positionBin=14
/tmp/adamTestMvnM5Ay7Lc/TempSuite5615064392449620474.adam/referenceName=1/positionBin=14/part-00000-011e936e-e806-4371-858c-7adf841ba361.c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite5615064392449620474.adam/referenceName=1/positionBin=14/.part-00000-011e936e-e806-4371-858c-7adf841ba361.c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5615064392449620474.adam/referenceName=1/positionBin=240
/tmp/adamTestMvnM5Ay7Lc/TempSuite5615064392449620474.adam/referenceName=1/positionBin=240/part-00002-011e936e-e806-4371-858c-7adf841ba361.c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite5615064392449620474.adam/referenceName=1/positionBin=240/.part-00002-011e936e-e806-4371-858c-7adf841ba361.c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5615064392449620474.adam/._partitionedByStartPos.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5615064392449620474.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite5615064392449620474.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite5615064392449620474.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5615064392449620474.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7555215795754841648
/tmp/adamTestMvnM5Ay7Lc/TempSuite7122892796398234858.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite7122892796398234858.adam/part-00000-576fea50-14ba-48f9-8484-c1aa6c35fc04-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite7122892796398234858.adam/part-00002-576fea50-14ba-48f9-8484-c1aa6c35fc04-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite7122892796398234858.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7122892796398234858.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7122892796398234858.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite7122892796398234858.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite7122892796398234858.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite7122892796398234858.adam/.part-00000-576fea50-14ba-48f9-8484-c1aa6c35fc04-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7122892796398234858.adam/.part-00001-576fea50-14ba-48f9-8484-c1aa6c35fc04-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7122892796398234858.adam/part-00001-576fea50-14ba-48f9-8484-c1aa6c35fc04-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite7122892796398234858.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite7122892796398234858.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7122892796398234858.adam/.part-00002-576fea50-14ba-48f9-8484-c1aa6c35fc04-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7122892796398234858.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/1062736766872117146
/tmp/adamTestMvnM5Ay7Lc/1062736766872117146/.small.vcf.bgz.crc
/tmp/adamTestMvnM5Ay7Lc/1062736766872117146/small.vcf.bgz
/tmp/adamTestMvnM5Ay7Lc/842139368806984282
/tmp/adamTestMvnM5Ay7Lc/842139368806984282/variants.lex.adam
/tmp/adamTestMvnM5Ay7Lc/842139368806984282/variants.lex.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/842139368806984282/variants.lex.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/842139368806984282/variants.lex.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/842139368806984282/variants.lex.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/842139368806984282/variants.lex.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/842139368806984282/variants.lex.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/842139368806984282/variants.lex.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/842139368806984282/variants.lex.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/842139368806984282/variants.lex.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/842139368806984282/variants.lex.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/842139368806984282/variants.lex.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/842139368806984282/variants.lex.adam/_header
/tmp/adamTestMvnM5Ay7Lc/TempSuite6070933649307139813.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite6070933649307139813.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite6070933649307139813.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6070933649307139813.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite6070933649307139813.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite6070933649307139813.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6070933649307139813.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6070933649307139813.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite6070933649307139813.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite6070933649307139813.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite6070933649307139813.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6070933649307139813.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6070933649307139813.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6070933649307139813.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6070933649307139813.adam/_header
/tmp/adamTestMvnM5Ay7Lc/1579888479332-0
/tmp/adamTestMvnM5Ay7Lc/1579888479332-0/.test.gvcf.vcf.crc
/tmp/adamTestMvnM5Ay7Lc/1579888479332-0/test.gvcf.vcf
/tmp/adamTestMvnM5Ay7Lc/4275807282068783595
/tmp/adamTestMvnM5Ay7Lc/4275807282068783595/predicate.1.adam
/tmp/adamTestMvnM5Ay7Lc/4275807282068783595/predicate.1.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/4275807282068783595/predicate.1.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/4275807282068783595/predicate.1.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/4275807282068783595/predicate.1.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/4275807282068783595/predicate.1.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/4275807282068783595/predicate.1.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/4275807282068783595/predicate.1.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/4275807282068783595/predicate.1.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/4275807282068783595/predicate.1.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/4275807282068783595/predicate.1.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/4275807282068783595/predicate.1.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/4275807282068783595/predicate.1.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/4275807282068783595/predicate.1.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/4275807282068783595/predicate.1.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1563111023861323816.bed
/tmp/adamTestMvnM5Ay7Lc/TempSuite1563111023861323816.bed/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1563111023861323816.bed/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite1563111023861323816.bed/part-00000
/tmp/adamTestMvnM5Ay7Lc/TempSuite1563111023861323816.bed/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/unordered.sam1352447523426406312.sam
/tmp/adamTestMvnM5Ay7Lc/TempSuite8923740784068153783
/tmp/adamTestMvnM5Ay7Lc/5939477813724731146
/tmp/adamTestMvnM5Ay7Lc/5939477813724731146/sorted-variants.vcf
/tmp/adamTestMvnM5Ay7Lc/5939477813724731146/.sorted-variants.vcf.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite7336131769402186214
/tmp/adamTestMvnM5Ay7Lc/4175608703425185960
/tmp/adamTestMvnM5Ay7Lc/4175608703425185960/unordered.sam
/tmp/adamTestMvnM5Ay7Lc/4175608703425185960/.unordered.sam.crc
/tmp/adamTestMvnM5Ay7Lc/3255185272966889033
/tmp/adamTestMvnM5Ay7Lc/3255185272966889033/genotypes.adam
/tmp/adamTestMvnM5Ay7Lc/3255185272966889033/genotypes.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/3255185272966889033/genotypes.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/3255185272966889033/genotypes.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/3255185272966889033/genotypes.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/3255185272966889033/genotypes.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/3255185272966889033/genotypes.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/3255185272966889033/genotypes.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/3255185272966889033/genotypes.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/3255185272966889033/genotypes.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/3255185272966889033/genotypes.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/3255185272966889033/genotypes.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/3255185272966889033/genotypes.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/3255185272966889033/genotypes.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/3255185272966889033/genotypes.adam/_header
/tmp/adamTestMvnM5Ay7Lc/.TempSuite7482788218295794894_1.fq.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4607957482909062485
/tmp/adamTestMvnM5Ay7Lc/TempSuite2630253775491682942.bam
/tmp/adamTestMvnM5Ay7Lc/TempSuite2630253775491682942.bam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite2630253775491682942.bam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2630253775491682942.bam/.part-r-00000.bam.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2630253775491682942.bam/part-r-00000.bam
/tmp/adamTestMvnM5Ay7Lc/TempSuite1082734937740639893
/tmp/adamTestMvnM5Ay7Lc/TempSuite9217804160954376329.bed
/tmp/adamTestMvnM5Ay7Lc/TempSuite9217804160954376329.bed/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite9217804160954376329.bed/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite9217804160954376329.bed/part-00000
/tmp/adamTestMvnM5Ay7Lc/TempSuite9217804160954376329.bed/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2553407576010395057.bed
/tmp/adamTestMvnM5Ay7Lc/TempSuite2553407576010395057.bed/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2553407576010395057.bed/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite2553407576010395057.bed/part-00000
/tmp/adamTestMvnM5Ay7Lc/TempSuite2553407576010395057.bed/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1534228957722732495
/tmp/adamTestMvnM5Ay7Lc/TempSuite5954565187209599124.bed
/tmp/adamTestMvnM5Ay7Lc/TempSuite5954565187209599124.bed/.part-00003.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5954565187209599124.bed/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5954565187209599124.bed/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite5954565187209599124.bed/part-00003
/tmp/adamTestMvnM5Ay7Lc/TempSuite5954565187209599124.bed/part-00000
/tmp/adamTestMvnM5Ay7Lc/TempSuite5954565187209599124.bed/part-00002
/tmp/adamTestMvnM5Ay7Lc/TempSuite5954565187209599124.bed/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5954565187209599124.bed/.part-00002.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite5954565187209599124.bed/part-00001
/tmp/adamTestMvnM5Ay7Lc/TempSuite5954565187209599124.bed/.part-00001.crc
/tmp/adamTestMvnM5Ay7Lc/.TempSuite6430184365950984143.bam.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite9058275323505029212.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite9058275323505029212.adam/part-00000-4560f6f2-3fea-48ce-bd34-4899ec2acff5-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite9058275323505029212.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite9058275323505029212.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite9058275323505029212.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite9058275323505029212.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite9058275323505029212.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite9058275323505029212.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite9058275323505029212.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite9058275323505029212.adam/_header
/tmp/adamTestMvnM5Ay7Lc/TempSuite9058275323505029212.adam/.part-00000-4560f6f2-3fea-48ce-bd34-4899ec2acff5-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1951649764281460423
/tmp/adamTestMvnM5Ay7Lc/TempSuite4611807675859652820
/tmp/adamTestMvnM5Ay7Lc/TempSuite141309376412004027.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite141309376412004027.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite141309376412004027.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite141309376412004027.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite141309376412004027.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite141309376412004027.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite141309376412004027.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite141309376412004027.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite141309376412004027.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite141309376412004027.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite141309376412004027.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite72589948995444643.gtf
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite72589948995444643.gtf/.part-00003.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite72589948995444643.gtf/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite72589948995444643.gtf/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite72589948995444643.gtf/part-00003
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite72589948995444643.gtf/part-00000
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite72589948995444643.gtf/part-00002
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite72589948995444643.gtf/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite72589948995444643.gtf/.part-00002.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite72589948995444643.gtf/part-00001
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite72589948995444643.gtf/.part-00001.crc
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite6395663085296967740.adam
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite6395663085296967740.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite6395663085296967740.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite6395663085296967740.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite6395663085296967740.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite6395663085296967740.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite6395663085296967740.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite6395663085296967740.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite6395663085296967740.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite6395663085296967740.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite6395663085296967740.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite6395663085296967740.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite6395663085296967740.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite6395663085296967740.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite6395663085296967740.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite6395663085296967740.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/ReadDatasetSuite6395663085296967740.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite8951484923703235578.interval_list
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite8951484923703235578.interval_list/.part-00003.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite8951484923703235578.interval_list/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite8951484923703235578.interval_list/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite8951484923703235578.interval_list/part-00003
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite8951484923703235578.interval_list/part-00000
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite8951484923703235578.interval_list/part-00002
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite8951484923703235578.interval_list/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite8951484923703235578.interval_list/.part-00002.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite8951484923703235578.interval_list/part-00001
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite8951484923703235578.interval_list/.part-00001.crc
/tmp/adamTestMvnM5Ay7Lc/bqsr16856686464514525714
/tmp/adamTestMvnM5Ay7Lc/bqsr16856686464514525714/bqsr1.bam
/tmp/adamTestMvnM5Ay7Lc/bqsr16856686464514525714/.bqsr1.bam.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1684785718597122302
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite8114593683676855557.narrowPeak
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite353257072368870048
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite2201682165117160290.bed
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite2201682165117160290.bed/.part-00003.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite2201682165117160290.bed/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite2201682165117160290.bed/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite2201682165117160290.bed/part-00003
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite2201682165117160290.bed/part-00000
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite2201682165117160290.bed/part-00002
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite2201682165117160290.bed/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite2201682165117160290.bed/.part-00002.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite2201682165117160290.bed/part-00001
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite2201682165117160290.bed/.part-00001.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8233277161072085620
/tmp/adamTestMvnM5Ay7Lc/TempSuite2283500044302133057
/tmp/adamTestMvnM5Ay7Lc/TempSuite1255551176240434590
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite4778781338993203806
/tmp/adamTestMvnM5Ay7Lc/TempSuite1822714218602115821
/tmp/adamTestMvnM5Ay7Lc/TempSuite8524852096117088884
/tmp/adamTestMvnM5Ay7Lc/TempSuite4425632098406226060.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite4425632098406226060.adam/.part-00000-ce5b9deb-e543-41d2-afa4-ae475ae2816e-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4425632098406226060.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4425632098406226060.adam/part-00001-ce5b9deb-e543-41d2-afa4-ae475ae2816e-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite4425632098406226060.adam/.part-00001-ce5b9deb-e543-41d2-afa4-ae475ae2816e-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4425632098406226060.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite4425632098406226060.adam/part-00002-ce5b9deb-e543-41d2-afa4-ae475ae2816e-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite4425632098406226060.adam/.part-00002-ce5b9deb-e543-41d2-afa4-ae475ae2816e-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4425632098406226060.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite4425632098406226060.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4425632098406226060.adam/part-00000-ce5b9deb-e543-41d2-afa4-ae475ae2816e-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite2628454560249017766.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite2628454560249017766.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2628454560249017766.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite2628454560249017766.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite2628454560249017766.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2628454560249017766.adam/part-00000-8480ad1d-0aba-4cd0-8f0b-348e7e43bc6f-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite2628454560249017766.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2628454560249017766.adam/_header
/tmp/adamTestMvnM5Ay7Lc/TempSuite2628454560249017766.adam/.part-00000-8480ad1d-0aba-4cd0-8f0b-348e7e43bc6f-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite6750164447482301740.gtf
/tmp/adamTestMvnM5Ay7Lc/TempSuite8945634692452448114.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite8945634692452448114.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8945634692452448114.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite8945634692452448114.adam/part-00000-ef8130ac-ee92-4b99-a7ed-641df0f27393-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite8945634692452448114.adam/.part-00000-ef8130ac-ee92-4b99-a7ed-641df0f27393-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8945634692452448114.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite8945634692452448114.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite8945634692452448114.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8945634692452448114.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8945634692452448114.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8945634692452448114.adam/_header
/tmp/adamTestMvnM5Ay7Lc/javaAC3834395861034311472
/tmp/adamTestMvnM5Ay7Lc/javaAC3834395861034311472/testRdd.genotype.adam
/tmp/adamTestMvnM5Ay7Lc/javaAC3834395861034311472/testRdd.genotype.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/javaAC3834395861034311472/testRdd.genotype.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC3834395861034311472/testRdd.genotype.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/javaAC3834395861034311472/testRdd.genotype.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/javaAC3834395861034311472/testRdd.genotype.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC3834395861034311472/testRdd.genotype.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC3834395861034311472/testRdd.genotype.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/javaAC3834395861034311472/testRdd.genotype.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/javaAC3834395861034311472/testRdd.genotype.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/javaAC3834395861034311472/testRdd.genotype.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC3834395861034311472/testRdd.genotype.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC3834395861034311472/testRdd.genotype.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC3834395861034311472/testRdd.genotype.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/javaAC3834395861034311472/testRdd.genotype.adam/_header
/tmp/adamTestMvnM5Ay7Lc/TempSuite844698026967249082.sam
/tmp/adamTestMvnM5Ay7Lc/TempSuite844698026967249082.sam/part-r-00000.sam
/tmp/adamTestMvnM5Ay7Lc/TempSuite844698026967249082.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite844698026967249082.sam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite844698026967249082.sam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4242793239669630489.bed
/tmp/adamTestMvnM5Ay7Lc/TempSuite4242793239669630489.bed/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4242793239669630489.bed/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite4242793239669630489.bed/part-00000
/tmp/adamTestMvnM5Ay7Lc/TempSuite4242793239669630489.bed/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/bqsr12896704794380691849
/tmp/adamTestMvnM5Ay7Lc/bqsr12896704794380691849/.bqsr1.sam.crc
/tmp/adamTestMvnM5Ay7Lc/bqsr12896704794380691849/bqsr1.sam
/tmp/adamTestMvnM5Ay7Lc/5946723872910989611
/tmp/adamTestMvnM5Ay7Lc/5946723872910989611/.sorted.lex.vcf.crc
/tmp/adamTestMvnM5Ay7Lc/5946723872910989611/sorted.lex.vcf
/tmp/adamTestMvnM5Ay7Lc/TempSuite6602111502671344631.bed
/tmp/adamTestMvnM5Ay7Lc/TempSuite6602111502671344631.bed/.part-00003.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6602111502671344631.bed/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6602111502671344631.bed/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite6602111502671344631.bed/part-00003
/tmp/adamTestMvnM5Ay7Lc/TempSuite6602111502671344631.bed/part-00000
/tmp/adamTestMvnM5Ay7Lc/TempSuite6602111502671344631.bed/part-00002
/tmp/adamTestMvnM5Ay7Lc/TempSuite6602111502671344631.bed/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6602111502671344631.bed/.part-00002.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite6602111502671344631.bed/part-00001
/tmp/adamTestMvnM5Ay7Lc/TempSuite6602111502671344631.bed/.part-00001.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8201444807507657193
/tmp/adamTestMvnM5Ay7Lc/TempSuite3046464430641329338
/tmp/adamTestMvnM5Ay7Lc/TempSuite6333209392584153756
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite399683138963348035.interval_list
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite399683138963348035.interval_list/.part-00003.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite399683138963348035.interval_list/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite399683138963348035.interval_list/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite399683138963348035.interval_list/part-00003
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite399683138963348035.interval_list/part-00000
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite399683138963348035.interval_list/part-00002
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite399683138963348035.interval_list/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite399683138963348035.interval_list/.part-00002.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite399683138963348035.interval_list/part-00001
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite399683138963348035.interval_list/.part-00001.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8920141385293783682.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite8920141385293783682.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8920141385293783682.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite8920141385293783682.adam/_partitionedByStartPos
/tmp/adamTestMvnM5Ay7Lc/TempSuite8920141385293783682.adam/referenceName=1
/tmp/adamTestMvnM5Ay7Lc/TempSuite8920141385293783682.adam/referenceName=1/positionBin=0
/tmp/adamTestMvnM5Ay7Lc/TempSuite8920141385293783682.adam/referenceName=1/positionBin=0/part-00000-aea8a4c0-2ed1-4f7d-8460-65a883fcbcb1.c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite8920141385293783682.adam/referenceName=1/positionBin=0/.part-00000-aea8a4c0-2ed1-4f7d-8460-65a883fcbcb1.c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8920141385293783682.adam/._partitionedByStartPos.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8920141385293783682.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite8920141385293783682.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite8920141385293783682.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8920141385293783682.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8920141385293783682.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8920141385293783682.adam/_header
/tmp/adamTestMvnM5Ay7Lc/TempSuite6507703936205546863
/tmp/adamTestMvnM5Ay7Lc/TempSuite4513245050552394989
/tmp/adamTestMvnM5Ay7Lc/TempSuite3515236325310965084.bed
/tmp/adamTestMvnM5Ay7Lc/TempSuite3515236325310965084.bed/.part-00003.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3515236325310965084.bed/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3515236325310965084.bed/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite3515236325310965084.bed/part-00003
/tmp/adamTestMvnM5Ay7Lc/TempSuite3515236325310965084.bed/part-00000
/tmp/adamTestMvnM5Ay7Lc/TempSuite3515236325310965084.bed/part-00002
/tmp/adamTestMvnM5Ay7Lc/TempSuite3515236325310965084.bed/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3515236325310965084.bed/.part-00002.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3515236325310965084.bed/part-00001
/tmp/adamTestMvnM5Ay7Lc/TempSuite3515236325310965084.bed/.part-00001.crc
/tmp/adamTestMvnM5Ay7Lc/1629286557329741606
/tmp/adamTestMvnM5Ay7Lc/1629286557329741606/out.sam_tail
/tmp/adamTestMvnM5Ay7Lc/1629286557329741606/out.sam_tail/part-r-00000.sam
/tmp/adamTestMvnM5Ay7Lc/1629286557329741606/out.sam_tail/.part-r-00003.sam.crc
/tmp/adamTestMvnM5Ay7Lc/1629286557329741606/out.sam_tail/.part-r-00000.sam.crc
/tmp/adamTestMvnM5Ay7Lc/1629286557329741606/out.sam_tail/part-r-00001.sam
/tmp/adamTestMvnM5Ay7Lc/1629286557329741606/out.sam_tail/.part-r-00002.sam.crc
/tmp/adamTestMvnM5Ay7Lc/1629286557329741606/out.sam_tail/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/1629286557329741606/out.sam_tail/.part-r-00001.sam.crc
/tmp/adamTestMvnM5Ay7Lc/1629286557329741606/out.sam_tail/part-r-00003.sam
/tmp/adamTestMvnM5Ay7Lc/1629286557329741606/out.sam_tail/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/1629286557329741606/out.sam_tail/part-r-00002.sam
/tmp/adamTestMvnM5Ay7Lc/1629286557329741606/.out.sam.crc
/tmp/adamTestMvnM5Ay7Lc/1629286557329741606/out.sam
/tmp/adamTestMvnM5Ay7Lc/1629286557329741606/out.sam_head
/tmp/adamTestMvnM5Ay7Lc/1629286557329741606/.out.sam_head.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3688805867373189442
/tmp/adamTestMvnM5Ay7Lc/TempSuite8196278553666223011.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite8196278553666223011.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite8196278553666223011.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8196278553666223011.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite8196278553666223011.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite8196278553666223011.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8196278553666223011.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8196278553666223011.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite8196278553666223011.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite8196278553666223011.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8196278553666223011.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8196278553666223011.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8196278553666223011.adam/_header
/tmp/adamTestMvnM5Ay7Lc/TempSuite7103947853200679572.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite7103947853200679572.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite7103947853200679572.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7103947853200679572.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7103947853200679572.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite7103947853200679572.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite7103947853200679572.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite7103947853200679572.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite7103947853200679572.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7103947853200679572.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7103947853200679572.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite7103947853200679572.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite7103947853200679572.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7103947853200679572.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7103947853200679572.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite699111066304752523.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite699111066304752523.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite699111066304752523.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite699111066304752523.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite699111066304752523.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite699111066304752523.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite699111066304752523.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite699111066304752523.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite699111066304752523.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite699111066304752523.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite699111066304752523.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite699111066304752523.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite699111066304752523.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite699111066304752523.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite699111066304752523.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite699111066304752523.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite699111066304752523.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite699111066304752523.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite699111066304752523.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2418694428088837614.bed
/tmp/adamTestMvnM5Ay7Lc/TempSuite2418694428088837614.bed/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2418694428088837614.bed/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite2418694428088837614.bed/part-00000
/tmp/adamTestMvnM5Ay7Lc/TempSuite2418694428088837614.bed/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7638919646999301175.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite7638919646999301175.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite7638919646999301175.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7638919646999301175.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite7638919646999301175.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite7638919646999301175.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7638919646999301175.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7638919646999301175.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite7638919646999301175.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite7638919646999301175.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7638919646999301175.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7638919646999301175.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite7638919646999301175.adam/_header
/tmp/adamTestMvnM5Ay7Lc/TempSuite4948110984271972035
/tmp/adamTestMvnM5Ay7Lc/.TempSuite7564147960968203101_2.fq.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite869992297608846774
/tmp/adamTestMvnM5Ay7Lc/random.vcf3416347377331031651.vcf
/tmp/adamTestMvnM5Ay7Lc/TempSuite977285341228744119.sam
/tmp/adamTestMvnM5Ay7Lc/TempSuite1830463049191087740.sam
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite7637589031785450247.narrowPeak
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite7637589031785450247.narrowPeak/.part-00003.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite7637589031785450247.narrowPeak/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite7637589031785450247.narrowPeak/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite7637589031785450247.narrowPeak/part-00003
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite7637589031785450247.narrowPeak/part-00000
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite7637589031785450247.narrowPeak/part-00002
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite7637589031785450247.narrowPeak/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite7637589031785450247.narrowPeak/.part-00002.crc
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite7637589031785450247.narrowPeak/part-00001
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite7637589031785450247.narrowPeak/.part-00001.crc
/tmp/adamTestMvnM5Ay7Lc/bqsr1.sam6855131430870840498.sam
/tmp/adamTestMvnM5Ay7Lc/FeatureDatasetFunctionsSuite8951484923703235578
/tmp/adamTestMvnM5Ay7Lc/.FeatureDatasetFunctionsSuite5951926402800048191.interval_list.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite2960388851497769193
/tmp/adamTestMvnM5Ay7Lc/TempSuite1649453076502620276.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite1649453076502620276.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite1649453076502620276.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite1649453076502620276.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1649453076502620276.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1649453076502620276.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1649453076502620276.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite1649453076502620276.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite1649453076502620276.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite1649453076502620276.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite1649453076502620276.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1649453076502620276.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite1649453076502620276.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1649453076502620276.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite1649453076502620276.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1649453076502620276.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite1649453076502620276.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1649453076502620276.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite1649453076502620276.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1649453076502620276.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1649453076502620276.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/595024952883942981
/tmp/adamTestMvnM5Ay7Lc/595024952883942981/unordered.bam
/tmp/adamTestMvnM5Ay7Lc/595024952883942981/.unordered.bam.crc
/tmp/adamTestMvnM5Ay7Lc/2008012915359018028
/tmp/adamTestMvnM5Ay7Lc/2008012915359018028/genotypes.nested-annotations.adam
/tmp/adamTestMvnM5Ay7Lc/2008012915359018028/genotypes.nested-annotations.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/2008012915359018028/genotypes.nested-annotations.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/2008012915359018028/genotypes.nested-annotations.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/2008012915359018028/genotypes.nested-annotations.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/2008012915359018028/genotypes.nested-annotations.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/2008012915359018028/genotypes.nested-annotations.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/2008012915359018028/genotypes.nested-annotations.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/2008012915359018028/genotypes.nested-annotations.adam/_samples.avro
/tmp/adamTestMvnM5Ay7Lc/2008012915359018028/genotypes.nested-annotations.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/2008012915359018028/genotypes.nested-annotations.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/2008012915359018028/genotypes.nested-annotations.adam/._samples.avro.crc
/tmp/adamTestMvnM5Ay7Lc/2008012915359018028/genotypes.nested-annotations.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/2008012915359018028/genotypes.nested-annotations.adam/._header.crc
/tmp/adamTestMvnM5Ay7Lc/2008012915359018028/genotypes.nested-annotations.adam/_header
/tmp/adamTestMvnM5Ay7Lc/TempSuite4069466246209005240.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite4069466246209005240.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4069466246209005240.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4069466246209005240.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite4069466246209005240.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite4069466246209005240.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite4069466246209005240.adam/.part-00000-ab175561-4f4a-4e1f-9319-0e0080541092-c000.snappy.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4069466246209005240.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite4069466246209005240.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4069466246209005240.adam/part-00000-ab175561-4f4a-4e1f-9319-0e0080541092-c000.snappy.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite4069466246209005240.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/3876228906350765913
/tmp/adamTestMvnM5Ay7Lc/3876228906350765913/.sorted-variants.lex.vcf.crc
/tmp/adamTestMvnM5Ay7Lc/3876228906350765913/sorted-variants.lex.vcf
/tmp/adamTestMvnM5Ay7Lc/TempSuite3796438917677582770.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite3796438917677582770.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite3796438917677582770.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3796438917677582770.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite3796438917677582770.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite3796438917677582770.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3796438917677582770.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3796438917677582770.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite3796438917677582770.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite3796438917677582770.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite3796438917677582770.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/.SliceDatasetSuite353257072368870048.fasta.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4611807675859652820.adam
/tmp/adamTestMvnM5Ay7Lc/TempSuite4611807675859652820.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite4611807675859652820.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite4611807675859652820.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4611807675859652820.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4611807675859652820.adam/._processingSteps.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4611807675859652820.adam/_readGroups.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite4611807675859652820.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite4611807675859652820.adam/_processingSteps.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite4611807675859652820.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite4611807675859652820.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4611807675859652820.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite4611807675859652820.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4611807675859652820.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/TempSuite4611807675859652820.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4611807675859652820.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/TempSuite4611807675859652820.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4611807675859652820.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/TempSuite4611807675859652820.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4611807675859652820.adam/._common_metadata.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite4611807675859652820.adam/._readGroups.avro.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite1777339963666905306
/tmp/adamTestMvnM5Ay7Lc/TempSuite699111066304752523
/tmp/adamTestMvnM5Ay7Lc/TempSuite8201444807507657193.bed
/tmp/adamTestMvnM5Ay7Lc/TempSuite8201444807507657193.bed/.part-00000.crc
/tmp/adamTestMvnM5Ay7Lc/TempSuite8201444807507657193.bed/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/TempSuite8201444807507657193.bed/part-00000
/tmp/adamTestMvnM5Ay7Lc/TempSuite8201444807507657193.bed/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite5268925974122526359.adam
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite5268925974122526359.adam/_common_metadata
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite5268925974122526359.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite5268925974122526359.adam/._references.avro.crc
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite5268925974122526359.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite5268925974122526359.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite5268925974122526359.adam/_SUCCESS
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite5268925974122526359.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite5268925974122526359.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite5268925974122526359.adam/._metadata.crc
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite5268925974122526359.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite5268925974122526359.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite5268925974122526359.adam/_references.avro
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite5268925974122526359.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite5268925974122526359.adam/_metadata
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite5268925974122526359.adam/._SUCCESS.crc
/tmp/adamTestMvnM5Ay7Lc/SliceDatasetSuite5268925974122526359.adam/._common_metadata.crc
rm -rf ${ADAM_MVN_TMP_DIR}
+ rm -rf /tmp/adamTestMvnM5Ay7Lc

find . -name pom.xml \
    -exec sed -i.bak \
    -e "s:sun.io.serialization.extendedDebugInfo=true -Djava.io.tmpdir=${ADAM_MVN_TMP_DIR}:sun.io.serialization.extendedDebugInfo=true:g" \
    {} \;
+ find . -name pom.xml -exec sed -i.bak -e 's:sun.io.serialization.extendedDebugInfo=true -Djava.io.tmpdir=/tmp/adamTestMvnM5Ay7Lc:sun.io.serialization.extendedDebugInfo=true:g' '{}' ';'
find . -name "*.bak" -exec rm -f {} \;
+ find . -name '*.bak' -exec rm -f '{}' ';'

# run integration tests

# make a temp directory
ADAM_TMP_DIR=$(mktemp -d -t adamTestXXXXXXX)
mktemp -d -t adamTestXXXXXXX
++ mktemp -d -t adamTestXXXXXXX
+ ADAM_TMP_DIR=/tmp/adamTestq6PY3D0

# Just to be paranoid.. use a directory internal to the ADAM_TMP_DIR
ADAM_TMP_DIR=$ADAM_TMP_DIR/deleteMePleaseThisIsNoLongerNeeded
+ ADAM_TMP_DIR=/tmp/adamTestq6PY3D0/deleteMePleaseThisIsNoLongerNeeded
mkdir $ADAM_TMP_DIR
+ mkdir /tmp/adamTestq6PY3D0/deleteMePleaseThisIsNoLongerNeeded

# set the TMPDIR envar, which is used by python to choose where to make temp directories
export TMPDIR=${ADAM_TMP_DIR}
+ export TMPDIR=/tmp/adamTestq6PY3D0/deleteMePleaseThisIsNoLongerNeeded
+ TMPDIR=/tmp/adamTestq6PY3D0/deleteMePleaseThisIsNoLongerNeeded

pushd $PROJECT_ROOT
+ pushd /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/scripts/..
~/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu ~/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu

# Copy the jar into our temp space for testing
cp -r . $ADAM_TMP_DIR
+ cp -r . /tmp/adamTestq6PY3D0/deleteMePleaseThisIsNoLongerNeeded
popd
+ popd
~/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu

pushd $ADAM_TMP_DIR
+ pushd /tmp/adamTestq6PY3D0/deleteMePleaseThisIsNoLongerNeeded
/tmp/adamTestq6PY3D0/deleteMePleaseThisIsNoLongerNeeded ~/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu

# what hadoop version are we on? format string for downloading spark assembly
if [[ $HADOOP_VERSION =~ ^2\.6 ]]; then
    HADOOP=hadoop2.6
elif [[ $HADOOP_VERSION =~ ^2\.7 ]]; then
    HADOOP=hadoop2.7
else
    echo "Unknown Hadoop version."
    exit 1
fi
+ [[ 2.7.5 =~ ^2\.6 ]]
+ [[ 2.7.5 =~ ^2\.7 ]]
+ HADOOP=hadoop2.7

# set spark artifact string for downloading assembly
SPARK=spark-${SPARK_VERSION}
+ SPARK=spark-2.4.4
    
# download prepackaged spark assembly

# Spark 2.4.3+ needs special case for Scala 2.12
if [ ${SCALAVER} == 2.12 ];
then
    curl \
        -L "https://www.apache.org/dyn/mirrors/mirrors.cgi?action=download&filename=spark/${SPARK}/${SPARK}-bin-without-hadoop-scala-2.12.tgz" \
        -o ${SPARK}-bin-without-hadoop-scala-2.12.tgz

    tar xzvf ${SPARK}-bin-without-hadoop-scala-2.12.tgz
    export SPARK_HOME=${ADAM_TMP_DIR}/${SPARK}-bin-without-hadoop-scala-2.12

    curl \
        -L "http://www-us.apache.org/dist/hadoop/common/hadoop-2.7.7/hadoop-2.7.7.tar.gz" \
        -o hadoop-2.7.7.tar.gz

    tar xzvf hadoop-2.7.7.tar.gz

    # remove references to avro 1.7.x
    find hadoop-2.7.7 -name *.jar | grep avro | xargs rm

    # download avro 1.8.x
    #curl \
    #    -L "http://repo1.maven.org/maven2/org/apache/avro/avro/1.8.2/avro-1.8.2.jar" \
    #    -o hadoop-2.7.7/share/hadoop/common/avro-1.8.2.jar

    export SPARK_DIST_CLASSPATH=$(hadoop-2.7.7/bin/hadoop classpath)
else
    curl \
        -L "https://www.apache.org/dyn/mirrors/mirrors.cgi?action=download&filename=spark/${SPARK}/${SPARK}-bin-${HADOOP}.tgz" \
        -o ${SPARK}-bin-${HADOOP}.tgz

    tar xzvf ${SPARK}-bin-${HADOOP}.tgz
    export SPARK_HOME=${ADAM_TMP_DIR}/${SPARK}-bin-${HADOOP}
fi
+ '[' 2.11 == 2.12 ']'
+ curl -L 'https://www.apache.org/dyn/mirrors/mirrors.cgi?action=download&filename=spark/spark-2.4.4/spark-2.4.4-bin-hadoop2.7.tgz' -o spark-2.4.4-bin-hadoop2.7.tgz
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0

  0  219M    0  308k    0     0   205k      0  0:18:15  0:00:01  0:18:14  205k
  0  219M    0 1073k    0     0   434k      0  0:08:36  0:00:02  0:08:34  791k
  1  219M    1 2361k    0     0   669k      0  0:05:35  0:00:03  0:05:32 1013k
  1  219M    1 3129k    0     0   702k      0  0:05:19  0:00:04  0:05:15  954k
  1  219M    1 3833k    0     0   701k      0  0:05:20  0:00:05  0:05:15  890k
  2  219M    2 4753k    0     0   737k      0  0:05:04  0:00:06  0:04:58  898k
  2  219M    2 5435k    0     0   730k      0  0:05:07  0:00:07  0:05:00  877k
  2  219M    2 6536k    0     0   774k      0  0:04:50  0:00:08  0:04:42  849k
  3  219M    3 7734k    0     0   816k      0  0:04:35  0:00:09  0:04:26  918k
  4  219M    4 9048k    0     0   862k      0  0:04:20  0:00:10  0:04:10 1036k
  4  219M    4 9567k    0     0   831k      0  0:04:30  0:00:11  0:04:19  951k
  4  219M    4  9.9M    0     0   815k      0  0:04:35  0:00:12  0:04:23  940k
  4  219M    4 10.9M    0     0   832k      0  0:04:29  0:00:13  0:04:16  931k
  5  219M    5 11.7M    0     0   832k      0  0:04:29  0:00:14  0:04:15  862k
  5  219M    5 12.5M    0     0   832k      0  0:04:29  0:00:15  0:04:14  769k
  6  219M    6 13.5M    0     0   839k      0  0:04:27  0:00:16  0:04:11  858k
  6  219M    6 14.5M    0     0   851k      0  0:04:23  0:00:17  0:04:06  941k
  7  219M    7 15.5M    0     0   864k      0  0:04:19  0:00:18  0:04:01  949k
  7  219M    7 16.8M    0     0   882k      0  0:04:14  0:00:19  0:03:55 1028k
  8  219M    8 17.8M    0     0   894k      0  0:04:11  0:00:20  0:03:51 1088k
  8  219M    8 19.0M    0     0   910k      0  0:04:06  0:00:21  0:03:45 1148k
  9  219M    9 20.3M    0     0   928k      0  0:04:02  0:00:22  0:03:40 1199k
  9  219M    9 21.6M    0     0   943k      0  0:03:58  0:00:23  0:03:35 1235k
 10  219M   10 22.9M    0     0   961k      0  0:03:53  0:00:24  0:03:29 1267k
 11  219M   11 24.2M    0     0   973k      0  0:03:50  0:00:25  0:03:25 1295k
 11  219M   11 25.3M    0     0   981k      0  0:03:48  0:00:26  0:03:22 1283k
 12  219M   12 26.7M    0     0   997k      0  0:03:45  0:00:27  0:03:18 1305k
 12  219M   12 27.7M    0     0   997k      0  0:03:45  0:00:28  0:03:17 1253k
 12  219M   12 28.4M    0     0   990k      0  0:03:46  0:00:29  0:03:17 1133k
 13  219M   13 29.3M    0     0   987k      0  0:03:47  0:00:30  0:03:17 1055k
 13  219M   13 30.3M    0     0   988k      0  0:03:47  0:00:31  0:03:16 1021k
 14  219M   14 31.3M    0     0   989k      0  0:03:47  0:00:32  0:03:15  945k
 14  219M   14 32.4M    0     0   994k      0  0:03:45  0:00:33  0:03:12  975k
 15  219M   15 33.6M    0     0   999k      0  0:03:44  0:00:34  0:03:10 1050k
 15  219M   15 33.9M    0     0   980k      0  0:03:49  0:00:35  0:03:14  937k
 15  219M   15 34.6M    0     0   974k      0  0:03:50  0:00:36  0:03:14  890k
 16  219M   16 35.4M    0     0   969k      0  0:03:51  0:00:37  0:03:14  847k
 16  219M   16 36.3M    0     0   968k      0  0:03:51  0:00:38  0:03:13  799k
 17  219M   17 37.3M    0     0   969k      0  0:03:51  0:00:39  0:03:12  762k
 17  219M   17 38.4M    0     0   973k      0  0:03:50  0:00:40  0:03:10  924k
 18  219M   18 39.5M    0     0   977k      0  0:03:49  0:00:41  0:03:08  999k
 18  219M   18 40.8M    0     0   986k      0  0:03:47  0:00:42  0:03:05 1109k
 19  219M   19 41.9M    0     0   989k      0  0:03:47  0:00:43  0:03:04 1147k
 19  219M   19 43.2M    0     0   995k      0  0:03:45  0:00:44  0:03:01 1204k
 20  219M   20 44.1M    0     0   994k      0  0:03:45  0:00:45  0:03:00 1174k
 20  219M   20 44.9M    0     0   990k      0  0:03:46  0:00:46  0:03:00 1094k
 20  219M   20 45.7M    0     0   988k      0  0:03:47  0:00:47  0:03:00 1006k
 21  219M   21 46.7M    0     0   988k      0  0:03:47  0:00:48  0:02:59  977k
 21  219M   21 47.8M    0     0   990k      0  0:03:46  0:00:49  0:02:57  944k
 22  219M   22 48.4M    0     0   981k      0  0:03:48  0:00:50  0:02:58  861k
 22  219M   22 48.9M    0     0   974k      0  0:03:50  0:00:51  0:02:59  826k
 22  219M   22 49.6M    0     0   969k      0  0:03:51  0:00:52  0:02:59  790k
 23  219M   23 50.5M    0     0   967k      0  0:03:52  0:00:53  0:02:59  763k
 23  219M   23 51.4M    0     0   966k      0  0:03:52  0:00:54  0:02:58  730k
 23  219M   23 52.4M    0     0   967k      0  0:03:52  0:00:55  0:02:57  820k
 24  219M   24 53.3M    0     0   968k      0  0:03:52  0:00:56  0:02:56  904k
 24  219M   24 54.3M    0     0   968k      0  0:03:52  0:00:57  0:02:55  951k
 25  219M   25 55.4M    0     0   970k      0  0:03:51  0:00:58  0:02:53 1009k
 25  219M   25 56.5M    0     0   974k      0  0:03:50  0:00:59  0:02:51 1058k
 26  219M   26 57.6M    0     0   977k      0  0:03:49  0:01:00  0:02:49 1089k
 26  219M   26 58.9M    0     0   982k      0  0:03:48  0:01:01  0:02:47 1141k
 27  219M   27 60.3M    0     0   989k      0  0:03:46  0:01:02  0:02:44 1241k
 28  219M   28 61.6M    0     0   994k      0  0:03:45  0:01:03  0:02:42 1274k
 28  219M   28 62.8M    0     0   999k      0  0:03:44  0:01:04  0:02:40 1298k
 29  219M   29 63.8M    0     0   999k      0  0:03:44  0:01:05  0:02:39 1262k
 29  219M   29 64.9M    0     0  1000k      0  0:03:44  0:01:06  0:02:38 1215k
 30  219M   30 65.9M    0     0  1001k      0  0:03:44  0:01:07  0:02:37 1153k
 30  219M   30 67.0M    0     0  1002k      0  0:03:44  0:01:08  0:02:36 1107k
 31  219M   31 68.0M    0     0  1003k      0  0:03:43  0:01:09  0:02:34 1053k
 31  219M   31 69.2M    0     0  1005k      0  0:03:43  0:01:10  0:02:33 1094k
 32  219M   32 70.4M    0     0  1008k      0  0:03:42  0:01:11  0:02:31 1120k
 32  219M   32 71.5M    0     0  1011k      0  0:03:42  0:01:12  0:02:30 1137k
 33  219M   33 72.7M    0     0  1014k      0  0:03:41  0:01:13  0:02:28 1169k
 33  219M   33 73.6M    0     0  1012k      0  0:03:41  0:01:14  0:02:27 1140k
 33  219M   33 74.4M    0     0  1010k      0  0:03:42  0:01:15  0:02:27 1073k
 34  219M   34 75.3M    0     0  1008k      0  0:03:42  0:01:16  0:02:26 1015k
 34  219M   34 76.3M    0     0  1009k      0  0:03:42  0:01:17  0:02:25  981k
 35  219M   35 77.4M    0     0  1010k      0  0:03:42  0:01:18  0:02:24  950k
 35  219M   35 78.6M    0     0  1013k      0  0:03:41  0:01:19  0:02:22 1024k
 36  219M   36 79.7M    0     0  1015k      0  0:03:41  0:01:20  0:02:21 1098k
 36  219M   36 81.0M    0     0  1018k      0  0:03:40  0:01:21  0:02:19 1167k
 37  219M   37 82.2M    0     0  1021k      0  0:03:39  0:01:22  0:02:17 1209k
 38  219M   38 83.5M    0     0  1025k      0  0:03:39  0:01:23  0:02:16 1266k
 38  219M   38 84.9M    0     0  1030k      0  0:03:38  0:01:24  0:02:14 1300k
 39  219M   39 85.9M    0     0  1030k      0  0:03:38  0:01:25  0:02:13 1259k
 39  219M   39 87.1M    0     0  1032k      0  0:03:37  0:01:26  0:02:11 1252k
 40  219M   40 88.5M    0     0  1036k      0  0:03:36  0:01:27  0:02:09 1289k
 40  219M   40 89.4M    0     0  1034k      0  0:03:37  0:01:28  0:02:09 1190k
 41  219M   41 90.2M    0     0  1032k      0  0:03:37  0:01:29  0:02:08 1080k
 41  219M   41 91.0M    0     0  1031k      0  0:03:37  0:01:30  0:02:07 1051k
 41  219M   41 92.0M    0     0  1030k      0  0:03:38  0:01:31  0:02:07 1002k
 42  219M   42 93.1M    0     0  1031k      0  0:03:37  0:01:32  0:02:05  936k
 42  219M   42 94.2M    0     0  1033k      0  0:03:37  0:01:33  0:02:04 1001k
 43  219M   43 95.5M    0     0  1035k      0  0:03:36  0:01:34  0:02:02 1090k
 44  219M   44 96.6M    0     0  1036k      0  0:03:36  0:01:35  0:02:01 1138k
 44  219M   44 97.8M    0     0  1038k      0  0:03:36  0:01:36  0:02:00 1185k
 45  219M   45 99.1M    0     0  1042k      0  0:03:35  0:01:37  0:01:58 1246k
 45  219M   45  100M    0     0  1046k      0  0:03:34  0:01:38  0:01:56 1296k
 46  219M   46  102M    0     0  1050k      0  0:03:33  0:01:39  0:01:54 1322k
 47  219M   47  103M    0     0  1054k      0  0:03:33  0:01:40  0:01:53 1395k
 47  219M   47  105M    0     0  1060k      0  0:03:31  0:01:41  0:01:50 1481k
 48  219M   48  106M    0     0  1063k      0  0:03:31  0:01:42  0:01:49 1487k
 49  219M   49  107M    0     0  1064k      0  0:03:31  0:01:43  0:01:48 1417k
 49  219M   49  108M    0     0  1061k      0  0:03:31  0:01:44  0:01:47 1286k
 49  219M   49  109M    0     0  1060k      0  0:03:31  0:01:45  0:01:46 1169k
 50  219M   50  110M    0     0  1058k      0  0:03:32  0:01:46  0:01:46 1028k
 50  219M   50  111M    0     0  1059k      0  0:03:32  0:01:47  0:01:45  958k
 51  219M   51  112M    0     0  1059k      0  0:03:32  0:01:48  0:01:44  963k
 51  219M   51  113M    0     0  1061k      0  0:03:31  0:01:49  0:01:42 1047k
 52  219M   52  114M    0     0  1060k      0  0:03:31  0:01:50  0:01:41 1076k
 52  219M   52  115M    0     0  1057k      0  0:03:32  0:01:51  0:01:41 1016k
 52  219M   52  115M    0     0  1053k      0  0:03:33  0:01:52  0:01:41  928k
 53  219M   53  116M    0     0  1050k      0  0:03:33  0:01:53  0:01:40  850k
 53  219M   53  117M    0     0  1048k      0  0:03:34  0:01:54  0:01:40  779k
 53  219M   53  118M    0     0  1047k      0  0:03:34  0:01:55  0:01:39  761k
 54  219M   54  119M    0     0  1048k      0  0:03:34  0:01:56  0:01:38  855k
 54  219M   54  120M    0     0  1048k      0  0:03:34  0:01:57  0:01:37  940k
 55  219M   55  121M    0     0  1049k      0  0:03:34  0:01:58  0:01:36 1030k
 55  219M   55  122M    0     0  1048k      0  0:03:34  0:01:59  0:01:35 1037k
 56  219M   56  123M    0     0  1047k      0  0:03:34  0:02:00  0:01:34 1033k
 56  219M   56  124M    0     0  1047k      0  0:03:34  0:02:01  0:01:33 1018k
 57  219M   57  125M    0     0  1046k      0  0:03:34  0:02:02  0:01:32  995k
 57  219M   57  126M    0     0  1045k      0  0:03:34  0:02:03  0:01:31  957k
 57  219M   57  126M    0     0  1044k      0  0:03:35  0:02:04  0:01:31  952k
 58  219M   58  127M    0     0  1042k      0  0:03:35  0:02:05  0:01:30  933k
 58  219M   58  128M    0     0  1041k      0  0:03:35  0:02:06  0:01:29  914k
 59  219M   59  129M    0     0  1041k      0  0:03:35  0:02:07  0:01:28  920k
 59  219M   59  130M    0     0  1041k      0  0:03:35  0:02:08  0:01:27  940k
 60  219M   60  131M    0     0  1043k      0  0:03:35  0:02:09  0:01:26 1010k
 60  219M   60  133M    0     0  1045k      0  0:03:34  0:02:10  0:01:24 1109k
 61  219M   61  134M    0     0  1044k      0  0:03:35  0:02:11  0:01:24 1120k
 61  219M   61  134M    0     0  1041k      0  0:03:35  0:02:12  0:01:23 1039k
 61  219M   61  135M    0     0  1038k      0  0:03:36  0:02:13  0:01:23  949k
 62  219M   62  136M    0     0  1036k      0  0:03:36  0:02:14  0:01:22  859k
 62  219M   62  136M    0     0  1035k      0  0:03:37  0:02:15  0:01:22  776k
 62  219M   62  137M    0     0  1035k      0  0:03:37  0:02:16  0:01:21  778k
 63  219M   63  139M    0     0  1035k      0  0:03:36  0:02:17  0:01:19  888k
 63  219M   63  140M    0     0  1037k      0  0:03:36  0:02:18  0:01:18 1008k
 64  219M   64  141M    0     0  1040k      0  0:03:35  0:02:19  0:01:16 1145k
 65  219M   65  142M    0     0  1042k      0  0:03:35  0:02:20  0:01:15 1220k
 65  219M   65  143M    0     0  1039k      0  0:03:36  0:02:21  0:01:15 1153k
 65  219M   65  144M    0     0  1038k      0  0:03:36  0:02:22  0:01:14 1112k
 66  219M   66  145M    0     0  1037k      0  0:03:36  0:02:23  0:01:13 1049k
 66  219M   66  146M    0     0  1035k      0  0:03:37  0:02:24  0:01:13  891k
 66  219M   66  146M    0     0  1034k      0  0:03:37  0:02:25  0:01:12  814k
 67  219M   67  147M    0     0  1033k      0  0:03:37  0:02:26  0:01:11  880k
 67  219M   67  148M    0     0  1033k      0  0:03:37  0:02:27  0:01:10  900k
 68  219M   68  149M    0     0  1033k      0  0:03:37  0:02:28  0:01:09  927k
 68  219M   68  151M    0     0  1034k      0  0:03:37  0:02:29  0:01:08 1028k
 69  219M   69  151M    0     0  1031k      0  0:03:37  0:02:30  0:01:07  963k
 69  219M   69  152M    0     0  1028k      0  0:03:38  0:02:31  0:01:07  881k
 69  219M   69  153M    0     0  1029k      0  0:03:38  0:02:32  0:01:06  897k
 70  219M   70  154M    0     0  1029k      0  0:03:38  0:02:33  0:01:05  892k
 70  219M   70  155M    0     0  1028k      0  0:03:38  0:02:34  0:01:04  850k
 71  219M   71  156M    0     0  1028k      0  0:03:38  0:02:35  0:01:03  939k
 71  219M   71  157M    0     0  1029k      0  0:03:38  0:02:36  0:01:02 1057k
 72  219M   72  158M    0     0  1030k      0  0:03:37  0:02:37  0:01:00 1082k
 72  219M   72  159M    0     0  1032k      0  0:03:37  0:02:38  0:00:59 1131k
 73  219M   73  160M    0     0  1031k      0  0:03:37  0:02:39  0:00:58 1098k
 73  219M   73  161M    0     0  1028k      0  0:03:38  0:02:40  0:00:58 1010k
 73  219M   73  161M    0     0  1026k      0  0:03:38  0:02:41  0:00:57  915k
 74  219M   74  162M    0     0  1024k      0  0:03:39  0:02:42  0:00:57  834k
 74  219M   74  163M    0     0  1024k      0  0:03:39  0:02:43  0:00:56  750k
 74  219M   74  164M    0     0  1023k      0  0:03:39  0:02:44  0:00:55  787k
 75  219M   75  165M    0     0  1024k      0  0:03:39  0:02:45  0:00:54  889k
 75  219M   75  166M    0     0  1023k      0  0:03:39  0:02:46  0:00:53  944k
 75  219M   75  166M    0     0  1019k      0  0:03:40  0:02:47  0:00:53  848k
 76  219M   76  167M    0     0  1017k      0  0:03:40  0:02:48  0:00:52  799k
 76  219M   76  167M    0     0  1015k      0  0:03:41  0:02:49  0:00:52  728k
 76  219M   76  168M    0     0  1012k      0  0:03:41  0:02:50  0:00:51  643k
 77  219M   77  169M    0     0  1011k      0  0:03:42  0:02:51  0:00:51  607k
 77  219M   77  170M    0     0  1011k      0  0:03:42  0:02:52  0:00:50  723k
 78  219M   78  171M    0     0  1010k      0  0:03:42  0:02:53  0:00:49  792k
 78  219M   78  172M    0     0  1011k      0  0:03:42  0:02:54  0:00:48  884k
 79  219M   79  173M    0     0  1012k      0  0:03:42  0:02:55  0:00:47  982k
 79  219M   79  174M    0     0  1013k      0  0:03:41  0:02:56  0:00:45 1079k
 80  219M   80  175M    0     0  1013k      0  0:03:41  0:02:57  0:00:44 1107k
 80  219M   80  176M    0     0  1013k      0  0:03:41  0:02:58  0:00:43 1115k
 81  219M   81  177M    0     0  1014k      0  0:03:41  0:02:59  0:00:42 1118k
 81  219M   81  178M    0     0  1015k      0  0:03:41  0:03:00  0:00:41 1117k
 82  219M   82  179M    0     0  1015k      0  0:03:41  0:03:01  0:00:40 1080k
 82  219M   82  180M    0     0  1015k      0  0:03:41  0:03:02  0:00:39 1074k
 82  219M   82  182M    0     0  1016k      0  0:03:41  0:03:03  0:00:38 1107k
 83  219M   83  183M    0     0  1017k      0  0:03:40  0:03:04  0:00:36 1134k
 84  219M   84  184M    0     0  1018k      0  0:03:40  0:03:05  0:00:35 1147k
 84  219M   84  185M    0     0  1020k      0  0:03:40  0:03:06  0:00:34 1189k
 85  219M   85  186M    0     0  1020k      0  0:03:40  0:03:07  0:00:33 1211k
 85  219M   85  187M    0     0  1019k      0  0:03:40  0:03:08  0:00:32 1145k
 85  219M   85  188M    0     0  1018k      0  0:03:40  0:03:09  0:00:31 1068k
 86  219M   86  189M    0     0  1018k      0  0:03:40  0:03:10  0:00:30 1024k
 86  219M   86  190M    0     0  1019k      0  0:03:40  0:03:11  0:00:29  979k
 87  219M   87  191M    0     0  1019k      0  0:03:40  0:03:12  0:00:28  989k
 87  219M   87  192M    0     0  1021k      0  0:03:40  0:03:13  0:00:27 1070k
 88  219M   88  194M    0     0  1022k      0  0:03:39  0:03:14  0:00:25 1165k
 89  219M   89  195M    0     0  1023k      0  0:03:39  0:03:15  0:00:24 1197k
 89  219M   89  196M    0     0  1022k      0  0:03:39  0:03:16  0:00:23 1172k
 89  219M   89  197M    0     0  1022k      0  0:03:39  0:03:17  0:00:22 1128k
 90  219M   90  198M    0     0  1022k      0  0:03:39  0:03:18  0:00:21 1097k
 90  219M   90  199M    0     0  1022k      0  0:03:39  0:03:19  0:00:20 1006k
 91  219M   91  200M    0     0  1022k      0  0:03:39  0:03:20  0:00:19  969k
 91  219M   91  201M    0     0  1022k      0  0:03:39  0:03:21  0:00:18 1003k
 92  219M   92  202M    0     0  1023k      0  0:03:39  0:03:22  0:00:17 1058k
 92  219M   92  203M    0     0  1024k      0  0:03:39  0:03:23  0:00:16 1080k
 93  219M   93  204M    0     0  1025k      0  0:03:39  0:03:24  0:00:15 1166k
 93  219M   93  206M    0     0  1027k      0  0:03:38  0:03:25  0:00:13 1255k
 94  219M   94  207M    0     0  1030k      0  0:03:38  0:03:26  0:00:12 1334k
 95  219M   95  209M    0     0  1032k      0  0:03:37  0:03:27  0:00:10 1410k
 96  219M   96  211M    0     0  1036k      0  0:03:36  0:03:28  0:00:08 1549k
 96  219M   96  211M    0     0  1035k      0  0:03:37  0:03:29  0:00:08 1428k
 96  219M   96  212M    0     0  1034k      0  0:03:37  0:03:30  0:00:07 1323k
 97  219M   97  213M    0     0  1034k      0  0:03:37  0:03:31  0:00:06 1217k
 97  219M   97  214M    0     0  1034k      0  0:03:37  0:03:32  0:00:05 1097k
 98  219M   98  215M    0     0  1034k      0  0:03:37  0:03:33  0:00:04  952k
 98  219M   98  216M    0     0  1036k      0  0:03:36  0:03:34  0:00:02 1062k
 99  219M   99  217M    0     0  1034k      0  0:03:37  0:03:35  0:00:02 1007k
 99  219M   99  218M    0     0  1032k      0  0:03:37  0:03:36  0:00:01  955k
 99  219M   99  219M    0     0  1032k      0  0:03:37  0:03:37 --:--:--  945k
100  219M  100  219M    0     0  1032k      0  0:03:37  0:03:37 --:--:--  890k
+ tar xzvf spark-2.4.4-bin-hadoop2.7.tgz
spark-2.4.4-bin-hadoop2.7/
spark-2.4.4-bin-hadoop2.7/R/
spark-2.4.4-bin-hadoop2.7/R/lib/
spark-2.4.4-bin-hadoop2.7/R/lib/sparkr.zip
spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/
spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/INDEX
spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/html/
spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/html/R.css
spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/html/00Index.html
spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/help/
spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/help/aliases.rds
spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/help/AnIndex
spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/help/SparkR.rdx
spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/help/SparkR.rdb
spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/help/paths.rds
spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/worker/
spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/worker/worker.R
spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/worker/daemon.R
spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/tests/
spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/tests/testthat/
spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/tests/testthat/test_basic.R
spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/profile/
spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/profile/shell.R
spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/profile/general.R
spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/R/
spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/R/SparkR.rdx
spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/R/SparkR.rdb
spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/R/SparkR
spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/Meta/
spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/Meta/nsInfo.rds
spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/Meta/links.rds
spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/Meta/hsearch.rds
spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/Meta/Rd.rds
spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/Meta/features.rds
spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/Meta/package.rds
spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/DESCRIPTION
spark-2.4.4-bin-hadoop2.7/R/lib/SparkR/NAMESPACE
spark-2.4.4-bin-hadoop2.7/sbin/
spark-2.4.4-bin-hadoop2.7/sbin/stop-shuffle-service.sh
spark-2.4.4-bin-hadoop2.7/sbin/start-thriftserver.sh
spark-2.4.4-bin-hadoop2.7/sbin/start-slave.sh
spark-2.4.4-bin-hadoop2.7/sbin/start-shuffle-service.sh
spark-2.4.4-bin-hadoop2.7/sbin/start-mesos-shuffle-service.sh
spark-2.4.4-bin-hadoop2.7/sbin/start-master.sh
spark-2.4.4-bin-hadoop2.7/sbin/start-history-server.sh
spark-2.4.4-bin-hadoop2.7/sbin/spark-config.sh
spark-2.4.4-bin-hadoop2.7/sbin/stop-thriftserver.sh
spark-2.4.4-bin-hadoop2.7/sbin/stop-slaves.sh
spark-2.4.4-bin-hadoop2.7/sbin/stop-slave.sh
spark-2.4.4-bin-hadoop2.7/sbin/stop-mesos-shuffle-service.sh
spark-2.4.4-bin-hadoop2.7/sbin/stop-mesos-dispatcher.sh
spark-2.4.4-bin-hadoop2.7/sbin/stop-master.sh
spark-2.4.4-bin-hadoop2.7/sbin/stop-history-server.sh
spark-2.4.4-bin-hadoop2.7/sbin/stop-all.sh
spark-2.4.4-bin-hadoop2.7/sbin/start-slaves.sh
spark-2.4.4-bin-hadoop2.7/sbin/start-mesos-dispatcher.sh
spark-2.4.4-bin-hadoop2.7/sbin/start-all.sh
spark-2.4.4-bin-hadoop2.7/sbin/spark-daemons.sh
spark-2.4.4-bin-hadoop2.7/sbin/spark-daemon.sh
spark-2.4.4-bin-hadoop2.7/sbin/slaves.sh
spark-2.4.4-bin-hadoop2.7/python/
spark-2.4.4-bin-hadoop2.7/python/dist/
spark-2.4.4-bin-hadoop2.7/python/pyspark.egg-info/
spark-2.4.4-bin-hadoop2.7/python/pyspark.egg-info/SOURCES.txt
spark-2.4.4-bin-hadoop2.7/python/pyspark.egg-info/dependency_links.txt
spark-2.4.4-bin-hadoop2.7/python/pyspark.egg-info/top_level.txt
spark-2.4.4-bin-hadoop2.7/python/pyspark.egg-info/PKG-INFO
spark-2.4.4-bin-hadoop2.7/python/pyspark.egg-info/requires.txt
spark-2.4.4-bin-hadoop2.7/python/README.md
spark-2.4.4-bin-hadoop2.7/python/MANIFEST.in
spark-2.4.4-bin-hadoop2.7/python/setup.py
spark-2.4.4-bin-hadoop2.7/python/run-tests.py
spark-2.4.4-bin-hadoop2.7/python/run-tests-with-coverage
spark-2.4.4-bin-hadoop2.7/python/test_support/
spark-2.4.4-bin-hadoop2.7/python/test_support/userlibrary.py
spark-2.4.4-bin-hadoop2.7/python/test_support/userlib-0.1.zip
spark-2.4.4-bin-hadoop2.7/python/test_support/sql/
spark-2.4.4-bin-hadoop2.7/python/test_support/sql/text-test.txt
spark-2.4.4-bin-hadoop2.7/python/test_support/sql/streaming/
spark-2.4.4-bin-hadoop2.7/python/test_support/sql/streaming/text-test.txt
spark-2.4.4-bin-hadoop2.7/python/test_support/sql/people_array_utf16le.json
spark-2.4.4-bin-hadoop2.7/python/test_support/sql/people_array.json
spark-2.4.4-bin-hadoop2.7/python/test_support/sql/people1.json
spark-2.4.4-bin-hadoop2.7/python/test_support/sql/people.json
spark-2.4.4-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/
spark-2.4.4-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2015/
spark-2.4.4-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2015/month=9/
spark-2.4.4-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2015/month=9/day=1/
spark-2.4.4-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2015/month=9/day=1/part-r-00007.gz.parquet
spark-2.4.4-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2015/month=9/day=1/.part-r-00007.gz.parquet.crc
spark-2.4.4-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2015/month=10/
spark-2.4.4-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2015/month=10/day=26/
spark-2.4.4-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2015/month=10/day=26/part-r-00005.gz.parquet
spark-2.4.4-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2015/month=10/day=26/.part-r-00005.gz.parquet.crc
spark-2.4.4-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2015/month=10/day=25/
spark-2.4.4-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2015/month=10/day=25/part-r-00004.gz.parquet
spark-2.4.4-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2015/month=10/day=25/part-r-00002.gz.parquet
spark-2.4.4-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2015/month=10/day=25/.part-r-00004.gz.parquet.crc
spark-2.4.4-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2015/month=10/day=25/.part-r-00002.gz.parquet.crc
spark-2.4.4-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2014/
spark-2.4.4-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2014/month=9/
spark-2.4.4-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2014/month=9/day=1/
spark-2.4.4-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2014/month=9/day=1/part-r-00008.gz.parquet
spark-2.4.4-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2014/month=9/day=1/.part-r-00008.gz.parquet.crc
spark-2.4.4-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/_metadata
spark-2.4.4-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/_common_metadata
spark-2.4.4-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/_SUCCESS
spark-2.4.4-bin-hadoop2.7/python/test_support/sql/orc_partitioned/
spark-2.4.4-bin-hadoop2.7/python/test_support/sql/orc_partitioned/b=1/
spark-2.4.4-bin-hadoop2.7/python/test_support/sql/orc_partitioned/b=1/c=1/
spark-2.4.4-bin-hadoop2.7/python/test_support/sql/orc_partitioned/b=1/c=1/part-r-00000-829af031-b970-49d6-ad39-30460a0be2c8.orc
spark-2.4.4-bin-hadoop2.7/python/test_support/sql/orc_partitioned/b=1/c=1/.part-r-00000-829af031-b970-49d6-ad39-30460a0be2c8.orc.crc
spark-2.4.4-bin-hadoop2.7/python/test_support/sql/orc_partitioned/b=0/
spark-2.4.4-bin-hadoop2.7/python/test_support/sql/orc_partitioned/b=0/c=0/
spark-2.4.4-bin-hadoop2.7/python/test_support/sql/orc_partitioned/b=0/c=0/part-r-00000-829af031-b970-49d6-ad39-30460a0be2c8.orc
spark-2.4.4-bin-hadoop2.7/python/test_support/sql/orc_partitioned/b=0/c=0/.part-r-00000-829af031-b970-49d6-ad39-30460a0be2c8.orc.crc
spark-2.4.4-bin-hadoop2.7/python/test_support/sql/orc_partitioned/_SUCCESS
spark-2.4.4-bin-hadoop2.7/python/test_support/sql/ages_newlines.csv
spark-2.4.4-bin-hadoop2.7/python/test_support/sql/ages.csv
spark-2.4.4-bin-hadoop2.7/python/test_support/hello/
spark-2.4.4-bin-hadoop2.7/python/test_support/hello/sub_hello/
spark-2.4.4-bin-hadoop2.7/python/test_support/hello/sub_hello/sub_hello.txt
spark-2.4.4-bin-hadoop2.7/python/test_support/hello/hello.txt
spark-2.4.4-bin-hadoop2.7/python/test_support/SimpleHTTPServer.py
spark-2.4.4-bin-hadoop2.7/python/test_coverage/
spark-2.4.4-bin-hadoop2.7/python/test_coverage/sitecustomize.py
spark-2.4.4-bin-hadoop2.7/python/test_coverage/coverage_daemon.py
spark-2.4.4-bin-hadoop2.7/python/test_coverage/conf/
spark-2.4.4-bin-hadoop2.7/python/test_coverage/conf/spark-defaults.conf
spark-2.4.4-bin-hadoop2.7/python/setup.cfg
spark-2.4.4-bin-hadoop2.7/python/run-tests
spark-2.4.4-bin-hadoop2.7/python/pyspark/
spark-2.4.4-bin-hadoop2.7/python/pyspark/python/
spark-2.4.4-bin-hadoop2.7/python/pyspark/python/pyspark/
spark-2.4.4-bin-hadoop2.7/python/pyspark/python/pyspark/shell.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/shuffle.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/serializers.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/rdd.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/profiler.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/java_gateway.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/files.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/daemon.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/context.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/conf.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/cloudpickle.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/broadcast.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/accumulators.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/__init__.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/worker.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/version.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/util.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/tests.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/test_serializers.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/test_broadcast.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/taskcontext.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/storagelevel.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/traceback_utils.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/streaming/
spark-2.4.4-bin-hadoop2.7/python/pyspark/streaming/tests.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/streaming/kinesis.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/streaming/kafka.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/streaming/flume.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/streaming/dstream.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/streaming/context.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/streaming/util.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/streaming/listener.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/streaming/__init__.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/status.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/statcounter.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/sql/
spark-2.4.4-bin-hadoop2.7/python/pyspark/sql/tests.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/sql/streaming.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/sql/session.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/sql/readwriter.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/sql/functions.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/sql/dataframe.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/sql/context.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/sql/window.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/sql/utils.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/sql/udf.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/sql/types.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/sql/group.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/sql/conf.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/sql/column.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/sql/catalog.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/sql/__init__.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/shell.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/resultiterable.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/rddsampler.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/mllib/
spark-2.4.4-bin-hadoop2.7/python/pyspark/mllib/util.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/mllib/tree.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/mllib/tests.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/mllib/regression.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/mllib/recommendation.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/mllib/random.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/mllib/fpm.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/mllib/feature.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/mllib/evaluation.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/mllib/clustering.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/mllib/classification.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/mllib/stat/
spark-2.4.4-bin-hadoop2.7/python/pyspark/mllib/stat/_statistics.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/mllib/stat/test.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/mllib/stat/distribution.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/mllib/stat/__init__.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/mllib/stat/KernelDensity.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/mllib/linalg/
spark-2.4.4-bin-hadoop2.7/python/pyspark/mllib/linalg/distributed.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/mllib/linalg/__init__.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/mllib/common.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/mllib/__init__.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/ml/
spark-2.4.4-bin-hadoop2.7/python/pyspark/ml/wrapper.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/ml/util.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/ml/tuning.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/ml/tests.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/ml/regression.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/ml/recommendation.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/ml/image.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/ml/fpm.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/ml/feature.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/ml/evaluation.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/ml/clustering.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/ml/classification.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/ml/stat.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/ml/pipeline.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/ml/param/
spark-2.4.4-bin-hadoop2.7/python/pyspark/ml/param/shared.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/ml/param/_shared_params_code_gen.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/ml/param/__init__.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/ml/linalg/
spark-2.4.4-bin-hadoop2.7/python/pyspark/ml/linalg/__init__.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/ml/common.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/ml/base.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/ml/__init__.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/join.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/heapq3.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/find_spark_home.py
spark-2.4.4-bin-hadoop2.7/python/pyspark/_globals.py
spark-2.4.4-bin-hadoop2.7/python/pylintrc
spark-2.4.4-bin-hadoop2.7/python/lib/
spark-2.4.4-bin-hadoop2.7/python/lib/pyspark.zip
spark-2.4.4-bin-hadoop2.7/python/lib/py4j-0.10.7-src.zip
spark-2.4.4-bin-hadoop2.7/python/lib/PY4J_LICENSE.txt
spark-2.4.4-bin-hadoop2.7/python/docs/
spark-2.4.4-bin-hadoop2.7/python/docs/pyspark.streaming.rst
spark-2.4.4-bin-hadoop2.7/python/docs/pyspark.sql.rst
spark-2.4.4-bin-hadoop2.7/python/docs/epytext.py
spark-2.4.4-bin-hadoop2.7/python/docs/conf.py
spark-2.4.4-bin-hadoop2.7/python/docs/Makefile
spark-2.4.4-bin-hadoop2.7/python/docs/pyspark.rst
spark-2.4.4-bin-hadoop2.7/python/docs/pyspark.mllib.rst
spark-2.4.4-bin-hadoop2.7/python/docs/pyspark.ml.rst
spark-2.4.4-bin-hadoop2.7/python/docs/make2.bat
spark-2.4.4-bin-hadoop2.7/python/docs/make.bat
spark-2.4.4-bin-hadoop2.7/python/docs/index.rst
spark-2.4.4-bin-hadoop2.7/python/docs/_templates/
spark-2.4.4-bin-hadoop2.7/python/docs/_templates/layout.html
spark-2.4.4-bin-hadoop2.7/python/docs/_static/
spark-2.4.4-bin-hadoop2.7/python/docs/_static/pyspark.js
spark-2.4.4-bin-hadoop2.7/python/docs/_static/pyspark.css
spark-2.4.4-bin-hadoop2.7/python/.gitignore
spark-2.4.4-bin-hadoop2.7/python/.coveragerc
spark-2.4.4-bin-hadoop2.7/bin/
spark-2.4.4-bin-hadoop2.7/bin/spark-class
spark-2.4.4-bin-hadoop2.7/bin/pyspark2.cmd
spark-2.4.4-bin-hadoop2.7/bin/pyspark
spark-2.4.4-bin-hadoop2.7/bin/load-spark-env.sh
spark-2.4.4-bin-hadoop2.7/bin/load-spark-env.cmd
spark-2.4.4-bin-hadoop2.7/bin/docker-image-tool.sh
spark-2.4.4-bin-hadoop2.7/bin/sparkR2.cmd
spark-2.4.4-bin-hadoop2.7/bin/sparkR.cmd
spark-2.4.4-bin-hadoop2.7/bin/sparkR
spark-2.4.4-bin-hadoop2.7/bin/spark-submit2.cmd
spark-2.4.4-bin-hadoop2.7/bin/spark-submit.cmd
spark-2.4.4-bin-hadoop2.7/bin/spark-submit
spark-2.4.4-bin-hadoop2.7/bin/spark-sql2.cmd
spark-2.4.4-bin-hadoop2.7/bin/spark-sql.cmd
spark-2.4.4-bin-hadoop2.7/bin/spark-sql
spark-2.4.4-bin-hadoop2.7/bin/spark-shell2.cmd
spark-2.4.4-bin-hadoop2.7/bin/spark-shell.cmd
spark-2.4.4-bin-hadoop2.7/bin/spark-shell
spark-2.4.4-bin-hadoop2.7/bin/spark-class2.cmd
spark-2.4.4-bin-hadoop2.7/bin/spark-class.cmd
spark-2.4.4-bin-hadoop2.7/bin/run-example.cmd
spark-2.4.4-bin-hadoop2.7/bin/run-example
spark-2.4.4-bin-hadoop2.7/bin/pyspark.cmd
spark-2.4.4-bin-hadoop2.7/bin/find-spark-home.cmd
spark-2.4.4-bin-hadoop2.7/bin/find-spark-home
spark-2.4.4-bin-hadoop2.7/bin/beeline.cmd
spark-2.4.4-bin-hadoop2.7/bin/beeline
spark-2.4.4-bin-hadoop2.7/README.md
spark-2.4.4-bin-hadoop2.7/conf/
spark-2.4.4-bin-hadoop2.7/conf/spark-env.sh.template
spark-2.4.4-bin-hadoop2.7/conf/spark-defaults.conf.template
spark-2.4.4-bin-hadoop2.7/conf/slaves.template
spark-2.4.4-bin-hadoop2.7/conf/metrics.properties.template
spark-2.4.4-bin-hadoop2.7/conf/log4j.properties.template
spark-2.4.4-bin-hadoop2.7/conf/fairscheduler.xml.template
spark-2.4.4-bin-hadoop2.7/conf/docker.properties.template
spark-2.4.4-bin-hadoop2.7/data/
spark-2.4.4-bin-hadoop2.7/data/mllib/
spark-2.4.4-bin-hadoop2.7/data/mllib/gmm_data.txt
spark-2.4.4-bin-hadoop2.7/data/mllib/als/
spark-2.4.4-bin-hadoop2.7/data/mllib/als/test.data
spark-2.4.4-bin-hadoop2.7/data/mllib/als/sample_movielens_ratings.txt
spark-2.4.4-bin-hadoop2.7/data/mllib/streaming_kmeans_data_test.txt
spark-2.4.4-bin-hadoop2.7/data/mllib/sample_svm_data.txt
spark-2.4.4-bin-hadoop2.7/data/mllib/sample_multiclass_classification_data.txt
spark-2.4.4-bin-hadoop2.7/data/mllib/sample_movielens_data.txt
spark-2.4.4-bin-hadoop2.7/data/mllib/sample_linear_regression_data.txt
spark-2.4.4-bin-hadoop2.7/data/mllib/sample_libsvm_data.txt
spark-2.4.4-bin-hadoop2.7/data/mllib/sample_lda_libsvm_data.txt
spark-2.4.4-bin-hadoop2.7/data/mllib/sample_lda_data.txt
spark-2.4.4-bin-hadoop2.7/data/mllib/sample_kmeans_data.txt
spark-2.4.4-bin-hadoop2.7/data/mllib/sample_isotonic_regression_libsvm_data.txt
spark-2.4.4-bin-hadoop2.7/data/mllib/sample_fpgrowth.txt
spark-2.4.4-bin-hadoop2.7/data/mllib/sample_binary_classification_data.txt
spark-2.4.4-bin-hadoop2.7/data/mllib/ridge-data/
spark-2.4.4-bin-hadoop2.7/data/mllib/ridge-data/lpsa.data
spark-2.4.4-bin-hadoop2.7/data/mllib/pic_data.txt
spark-2.4.4-bin-hadoop2.7/data/mllib/pagerank_data.txt
spark-2.4.4-bin-hadoop2.7/data/mllib/kmeans_data.txt
spark-2.4.4-bin-hadoop2.7/data/mllib/iris_libsvm.txt
spark-2.4.4-bin-hadoop2.7/data/mllib/images/
spark-2.4.4-bin-hadoop2.7/data/mllib/images/partitioned/
spark-2.4.4-bin-hadoop2.7/data/mllib/images/partitioned/cls=multichannel/
spark-2.4.4-bin-hadoop2.7/data/mllib/images/partitioned/cls=multichannel/date=2018-02/
spark-2.4.4-bin-hadoop2.7/data/mllib/images/partitioned/cls=multichannel/date=2018-02/grayscale.jpg
spark-2.4.4-bin-hadoop2.7/data/mllib/images/partitioned/cls=multichannel/date=2018-02/chr30.4.184.jpg
spark-2.4.4-bin-hadoop2.7/data/mllib/images/partitioned/cls=multichannel/date=2018-01/
spark-2.4.4-bin-hadoop2.7/data/mllib/images/partitioned/cls=multichannel/date=2018-01/BGRA_alpha_60.png
spark-2.4.4-bin-hadoop2.7/data/mllib/images/partitioned/cls=multichannel/date=2018-01/BGRA.png
spark-2.4.4-bin-hadoop2.7/data/mllib/images/partitioned/cls=kittens/
spark-2.4.4-bin-hadoop2.7/data/mllib/images/partitioned/cls=kittens/date=2018-02/
spark-2.4.4-bin-hadoop2.7/data/mllib/images/partitioned/cls=kittens/date=2018-02/DP802813.jpg
spark-2.4.4-bin-hadoop2.7/data/mllib/images/partitioned/cls=kittens/date=2018-02/DP153539.jpg
spark-2.4.4-bin-hadoop2.7/data/mllib/images/partitioned/cls=kittens/date=2018-02/54893.jpg
spark-2.4.4-bin-hadoop2.7/data/mllib/images/partitioned/cls=kittens/date=2018-01/
spark-2.4.4-bin-hadoop2.7/data/mllib/images/partitioned/cls=kittens/date=2018-01/not-image.txt
spark-2.4.4-bin-hadoop2.7/data/mllib/images/partitioned/cls=kittens/date=2018-01/29.5.a_b_EGDP022204.jpg
spark-2.4.4-bin-hadoop2.7/data/mllib/images/origin/
spark-2.4.4-bin-hadoop2.7/data/mllib/images/origin/multi-channel/
spark-2.4.4-bin-hadoop2.7/data/mllib/images/origin/multi-channel/grayscale.jpg
spark-2.4.4-bin-hadoop2.7/data/mllib/images/origin/multi-channel/chr30.4.184.jpg
spark-2.4.4-bin-hadoop2.7/data/mllib/images/origin/multi-channel/BGRA_alpha_60.png
spark-2.4.4-bin-hadoop2.7/data/mllib/images/origin/multi-channel/BGRA.png
spark-2.4.4-bin-hadoop2.7/data/mllib/images/origin/license.txt
spark-2.4.4-bin-hadoop2.7/data/mllib/images/origin/kittens/
spark-2.4.4-bin-hadoop2.7/data/mllib/images/origin/kittens/not-image.txt
spark-2.4.4-bin-hadoop2.7/data/mllib/images/origin/kittens/DP802813.jpg
spark-2.4.4-bin-hadoop2.7/data/mllib/images/origin/kittens/DP153539.jpg
spark-2.4.4-bin-hadoop2.7/data/mllib/images/origin/kittens/54893.jpg
spark-2.4.4-bin-hadoop2.7/data/mllib/images/origin/kittens/29.5.a_b_EGDP022204.jpg
spark-2.4.4-bin-hadoop2.7/data/mllib/images/license.txt
spark-2.4.4-bin-hadoop2.7/data/graphx/
spark-2.4.4-bin-hadoop2.7/data/graphx/users.txt
spark-2.4.4-bin-hadoop2.7/data/graphx/followers.txt
spark-2.4.4-bin-hadoop2.7/data/streaming/
spark-2.4.4-bin-hadoop2.7/data/streaming/AFINN-111.txt
spark-2.4.4-bin-hadoop2.7/NOTICE
spark-2.4.4-bin-hadoop2.7/licenses/
spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-jtransforms.html
spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-json-formatter.txt
spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-jquery.txt
spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-join.txt
spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-jodd.txt
spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-jline.txt
spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-javolution.txt
spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-javassist.html
spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-janino.txt
spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-heapq.txt
spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-graphlib-dot.txt
spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-f2j.txt
spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-datatables.txt
spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-dagre-d3.txt
spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-d3.min.js.txt
spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-cloudpickle.txt
spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-bootstrap.txt
spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-automaton.txt
spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-arpack.txt
spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-antlr.txt
spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-CC0.txt
spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-AnchorJS.txt
spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-zstd.txt
spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-zstd-jni.txt
spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-xmlenc.txt
spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-vis.txt
spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-spire.txt
spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-sorttable.js.txt
spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-slf4j.txt
spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-scopt.txt
spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-scala.txt
spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-sbt-launch-lib.txt
spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-respond.txt
spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-reflectasm.txt
spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-pyrolite.txt
spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-py4j.txt
spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-protobuf.txt
spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-pmml-model.txt
spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-paranamer.txt
spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-netlib.txt
spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-mustache.txt
spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-modernizr.txt
spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-minlog.txt
spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-matchMedia-polyfill.txt
spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-machinist.txt
spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-leveldbjni.txt
spark-2.4.4-bin-hadoop2.7/licenses/LICENSE-kryo.txt
spark-2.4.4-bin-hadoop2.7/LICENSE
spark-2.4.4-bin-hadoop2.7/examples/
spark-2.4.4-bin-hadoop2.7/examples/src/
spark-2.4.4-bin-hadoop2.7/examples/src/main/
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/ElementwiseProductExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/DenseKMeans.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/DecisionTreeRegressionExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/DecisionTreeClassificationExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/CosineSimilarity.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/CorrelationsExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/Correlations.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/ChiSqSelectorExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/BisectingKMeansExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/BinaryClassificationMetricsExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/AssociationRulesExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/AbstractParams.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/Word2VecExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/TallSkinnySVD.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/TallSkinnyPCA.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/TFIDFExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/SummaryStatisticsExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/StreamingTestExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/StreamingLogisticRegression.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/StreamingLinearRegressionExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/StreamingKMeansExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/StratifiedSamplingExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/StandardScalerExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/SparseNaiveBayes.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/SimpleFPGrowth.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/SampledRDDs.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/SVMWithSGDExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/SVDExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/RegressionMetricsExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/RecommendationExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/RandomRDDGeneration.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/RandomForestRegressionExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/RandomForestClassificationExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/PrefixSpanExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/PowerIterationClusteringExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/PMMLModelExportExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/PCAOnSourceVectorExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/PCAOnRowMatrixExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/PCAExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/NormalizerExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/NaiveBayesExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/MultivariateSummarizer.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/MulticlassMetricsExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/MultiLabelMetricsExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/LogisticRegressionWithLBFGSExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/LinearRegressionWithSGDExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/LatentDirichletAllocationExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/LDAExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/LBFGSExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/KernelDensityEstimationExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/KMeansExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/IsotonicRegressionExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/HypothesisTestingKolmogorovSmirnovTestExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/HypothesisTestingExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/GradientBoostingRegressionExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/GradientBoostingClassificationExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/GaussianMixtureExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/FPGrowthExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/RankingMetricsExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/MovieLensALS.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/LinearRegression.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/GradientBoostedTreesRunner.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/DecisionTreeRunner.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/BinaryClassification.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/Word2VecExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/VectorSlicerExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/VectorSizeHintExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/VectorIndexerExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/VectorAssemblerExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/UnaryTransformerExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/TokenizerExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/TfIdfExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/SummarizerExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/StringIndexerExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/StopWordsRemoverExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/StandardScalerExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/SQLTransformerExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/RandomForestRegressorExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/RandomForestExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/RFormulaExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/QuantileDiscretizerExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/PowerIterationClusteringExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/PolynomialExpansionExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/PipelineExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/PCAExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/OneVsRestExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/NormalizerExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/NaiveBayesExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/NGramExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/MultilayerPerceptronClassifierExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/MulticlassLogisticRegressionWithElasticNetExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/ModelSelectionViaTrainValidationSplitExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/ModelSelectionViaCrossValidationExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/MinMaxScalerExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/MinHashLSHExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/MaxAbsScalerExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/LogisticRegressionWithElasticNetExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/LogisticRegressionSummaryExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/LogisticRegressionExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/LinearSVCExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/LinearRegressionWithElasticNetExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/LinearRegressionExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/LDAExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/KMeansExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/IsotonicRegressionExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/InteractionExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/IndexToStringExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/ImputerExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/GradientBoostedTreeRegressorExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/GeneralizedLinearRegressionExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/GaussianMixtureExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/GBTExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/FeatureHasherExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/EstimatorTransformerParamExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/ElementwiseProductExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/DeveloperApiExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/DecisionTreeRegressionExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/DecisionTreeExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/DataFrameExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/DCTExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/CountVectorizerExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/CorrelationExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/ChiSquareTestExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/ChiSqSelectorExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/BucketizerExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/BucketedRandomProjectionLSHExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/BinarizerExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/ALSExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/AFTSurvivalRegressionExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/RandomForestClassifierExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/PrefixSpanExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/OneHotEncoderEstimatorExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/GradientBoostedTreeClassifierExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/FPGrowthExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/DecisionTreeClassificationExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/BisectingKMeansExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/graphx/
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/graphx/TriangleCountingExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/graphx/SynthBenchmark.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/graphx/SSSPExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/graphx/PageRankExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/graphx/LiveJournalPageRank.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/graphx/ConnectedComponentsExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/graphx/ComprehensiveExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/graphx/Analytics.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/graphx/AggregateMessagesExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/SparkTC.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/SparkRemoteFileTest.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/SparkPi.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/SparkPageRank.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/SparkLR.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/SparkKMeans.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/SparkHdfsLR.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/SparkALS.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/SkewedGroupByTest.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/SimpleSkewedGroupByTest.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/MultiBroadcastTest.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/LocalPi.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/LocalLR.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/LocalKMeans.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/LocalFileLR.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/LocalALS.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/GroupByTest.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ExceptionHandlingTest.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/DriverSubmissionTest.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/BroadcastTest.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/streaming/
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/streaming/clickstream/
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/streaming/clickstream/PageViewStream.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/streaming/clickstream/PageViewGenerator.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/streaming/StreamingExamples.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/streaming/StatefulNetworkWordCount.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/streaming/SqlNetworkWordCount.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/streaming/RecoverableNetworkWordCount.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/streaming/RawNetworkGrep.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/streaming/QueueStream.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/streaming/NetworkWordCount.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/streaming/HdfsWordCount.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/streaming/DirectKafkaWordCount.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/streaming/CustomReceiver.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/sql/
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/sql/streaming/
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/sql/streaming/StructuredSessionization.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/sql/streaming/StructuredNetworkWordCountWindowed.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/sql/streaming/StructuredNetworkWordCount.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/sql/streaming/StructuredKafkaWordCount.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/sql/hive/
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/sql/hive/SparkHiveExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/sql/UserDefinedUntypedAggregation.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/sql/UserDefinedTypedAggregation.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/sql/RDDRelation.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/sql/SparkSQLExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/sql/SQLDataSourceExample.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/pythonconverters/
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/pythonconverters/AvroConverters.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/LogQuery.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/HdfsTest.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/DFSReadWriteTest.scala
spark-2.4.4-bin-hadoop2.7/examples/src/main/resources/
spark-2.4.4-bin-hadoop2.7/examples/src/main/resources/users.parquet
spark-2.4.4-bin-hadoop2.7/examples/src/main/resources/users.orc
spark-2.4.4-bin-hadoop2.7/examples/src/main/resources/users.avro
spark-2.4.4-bin-hadoop2.7/examples/src/main/resources/user.avsc
spark-2.4.4-bin-hadoop2.7/examples/src/main/resources/people.txt
spark-2.4.4-bin-hadoop2.7/examples/src/main/resources/people.json
spark-2.4.4-bin-hadoop2.7/examples/src/main/resources/people.csv
spark-2.4.4-bin-hadoop2.7/examples/src/main/resources/kv1.txt
spark-2.4.4-bin-hadoop2.7/examples/src/main/resources/full_user.avsc
spark-2.4.4-bin-hadoop2.7/examples/src/main/resources/employees.json
spark-2.4.4-bin-hadoop2.7/examples/src/main/r/
spark-2.4.4-bin-hadoop2.7/examples/src/main/r/streaming/
spark-2.4.4-bin-hadoop2.7/examples/src/main/r/streaming/structured_network_wordcount.R
spark-2.4.4-bin-hadoop2.7/examples/src/main/r/ml/
spark-2.4.4-bin-hadoop2.7/examples/src/main/r/ml/svmLinear.R
spark-2.4.4-bin-hadoop2.7/examples/src/main/r/ml/survreg.R
spark-2.4.4-bin-hadoop2.7/examples/src/main/r/ml/randomForest.R
spark-2.4.4-bin-hadoop2.7/examples/src/main/r/ml/naiveBayes.R
spark-2.4.4-bin-hadoop2.7/examples/src/main/r/ml/mlp.R
spark-2.4.4-bin-hadoop2.7/examples/src/main/r/ml/ml.R
spark-2.4.4-bin-hadoop2.7/examples/src/main/r/ml/logit.R
spark-2.4.4-bin-hadoop2.7/examples/src/main/r/ml/lda.R
spark-2.4.4-bin-hadoop2.7/examples/src/main/r/ml/kstest.R
spark-2.4.4-bin-hadoop2.7/examples/src/main/r/ml/kmeans.R
spark-2.4.4-bin-hadoop2.7/examples/src/main/r/ml/isoreg.R
spark-2.4.4-bin-hadoop2.7/examples/src/main/r/ml/glm.R
spark-2.4.4-bin-hadoop2.7/examples/src/main/r/ml/gbt.R
spark-2.4.4-bin-hadoop2.7/examples/src/main/r/ml/gaussianMixture.R
spark-2.4.4-bin-hadoop2.7/examples/src/main/r/ml/fpm.R
spark-2.4.4-bin-hadoop2.7/examples/src/main/r/ml/decisionTree.R
spark-2.4.4-bin-hadoop2.7/examples/src/main/r/ml/bisectingKmeans.R
spark-2.4.4-bin-hadoop2.7/examples/src/main/r/ml/als.R
spark-2.4.4-bin-hadoop2.7/examples/src/main/r/dataframe.R
spark-2.4.4-bin-hadoop2.7/examples/src/main/r/data-manipulation.R
spark-2.4.4-bin-hadoop2.7/examples/src/main/r/RSparkSQLExample.R
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/wordcount.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/transitive_closure.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/streaming/
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/streaming/stateful_network_wordcount.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/streaming/sql_network_wordcount.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/streaming/queue_stream.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/streaming/network_wordjoinsentiments.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/streaming/network_wordcount.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/streaming/hdfs_wordcount.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/streaming/recoverable_network_wordcount.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/streaming/kafka_wordcount.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/streaming/flume_wordcount.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/streaming/direct_kafka_wordcount.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/status_api_demo.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/sql/
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/sql/streaming/
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/sql/streaming/structured_network_wordcount_windowed.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/sql/streaming/structured_network_wordcount.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/sql/streaming/structured_kafka_wordcount.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/sql/basic.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/sql/hive.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/sql/datasource.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/sql/arrow.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/sort.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/pi.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/parquet_inputformat.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/pagerank.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/word2vec_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/word2vec.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/tf_idf_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/svm_with_sgd_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/svd_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/summary_statistics_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/streaming_linear_regression_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/streaming_k_means_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/stratified_sampling_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/sampled_rdds.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/regression_metrics_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/recommendation_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/random_rdd_generation.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/random_forest_regression_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/random_forest_classification_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/power_iteration_clustering_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/pca_rowmatrix_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/normalizer_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/naive_bayes_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/multi_label_metrics_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/logistic_regression_with_lbfgs_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/logistic_regression.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/linear_regression_with_sgd_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/latent_dirichlet_allocation_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/kmeans.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/kernel_density_estimation_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/k_means_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/hypothesis_testing_kolmogorov_smirnov_test_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/hypothesis_testing_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/gradient_boosting_regression_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/gradient_boosting_classification_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/gaussian_mixture_model.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/gaussian_mixture_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/fpgrowth_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/elementwise_product_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/decision_tree_regression_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/decision_tree_classification_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/correlations_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/correlations.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/binary_classification_metrics_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/standard_scaler_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/ranking_metrics_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/multi_class_metrics_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/isotonic_regression_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/mllib/bisecting_k_means_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/word2vec_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/vector_slicer_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/vector_size_hint_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/vector_indexer_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/vector_assembler_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/train_validation_split.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/tokenizer_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/tf_idf_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/summarizer_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/string_indexer_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/stopwords_remover_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/standard_scaler_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/sql_transformer.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/rformula_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/random_forest_regressor_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/random_forest_classifier_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/quantile_discretizer_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/prefixspan_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/polynomial_expansion_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/pipeline_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/pca_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/one_vs_rest_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/normalizer_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/naive_bayes_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/n_gram_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/multilayer_perceptron_classification.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/multiclass_logistic_regression_with_elastic_net.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/min_max_scaler_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/min_hash_lsh_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/max_abs_scaler_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/logistic_regression_with_elastic_net.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/logistic_regression_summary_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/linearsvc.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/linear_regression_with_elastic_net.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/lda_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/kmeans_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/isotonic_regression_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/index_to_string_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/imputer_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/gradient_boosted_tree_regressor_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/gradient_boosted_tree_classifier_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/generalized_linear_regression_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/gaussian_mixture_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/fpgrowth_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/feature_hasher_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/estimator_transformer_param_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/elementwise_product_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/decision_tree_regression_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/decision_tree_classification_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/dct_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/dataframe_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/cross_validator.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/count_vectorizer_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/correlation_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/chisq_selector_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/chi_square_test_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/bucketizer_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/bucketed_random_projection_lsh_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/binarizer_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/als_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/aft_survival_regression.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/onehot_encoder_estimator_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/ml/bisecting_k_means_example.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/logistic_regression.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/kmeans.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/avro_inputformat.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/python/als.py
spark-2.4.4-bin-hadoop2.7/examples/src/main/java/
spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/
spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/
spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/
spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/
spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/streaming/
spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/streaming/JavaStatefulNetworkWordCount.java
spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/streaming/JavaSqlNetworkWordCount.java
spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/streaming/JavaRecoverableNetworkWordCount.java
spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/streaming/JavaRecord.java
spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/streaming/JavaQueueStream.java
spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/streaming/JavaNetworkWordCount.java
spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/streaming/JavaDirectKafkaWordCount.java
spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/streaming/JavaCustomReceiver.java
spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/sql/
spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/sql/streaming/
spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/sql/streaming/JavaStructuredNetworkWordCountWindowed.java
spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/sql/streaming/JavaStructuredNetworkWordCount.java
spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/sql/streaming/JavaStructuredKafkaWordCount.java
spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/sql/streaming/JavaStructuredSessionization.java
spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/sql/hive/
spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/sql/hive/JavaSparkHiveExample.java
spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/sql/JavaUserDefinedUntypedAggregation.java
spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/sql/JavaUserDefinedTypedAggregation.java
spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/sql/JavaSparkSQLExample.java
spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/sql/JavaSQLDataSourceExample.java
spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/
spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaSummaryStatisticsExample.java
spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaStreamingTestExample.java
spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaStratifiedSamplingExample.java
spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaSimpleFPGrowth.java
spark-2.4.4-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaSVMWithSGD