Test Result : NucleotideContigFragmentDatasetSuite

0 failures (±0)
30 tests (±0)
Took 32 sec.

All Tests

Test nameDurationStatus
extract sequences based on the list of reference regions0.65 secPassed
generate sequence dict from fasta0.37 secPassed
load fasta sequences from GFF3 file0.67 secPassed
merge multiple contig fragments0.93 secPassed
merge single contig fragment null fragment number0.98 secPassed
merge single contig fragment number zero1 secPassed
recover reference string from a single contig fragment0.81 secPassed
recover reference string from multiple contig fragments1.2 secPassed
recover trimmed reference string from a single contig fragment0.8 secPassed
recover trimmed reference string from multiple contig fragments1.3 secPassed
round trip a ncf to parquet2.1 secPassed
round trip a ncf to partitioned parquet2.5 secPassed
save as parquet and apply predicate pushdown0.99 secPassed
save fasta back as a single file0.8 secPassed
save multiple contig fragments from same contig as FASTA text file0.64 secPassed
save multiple contig fragments with description from same contig as FASTA text file0.62 secPassed
save single contig fragment as FASTA text file0.61 secPassed
save single contig fragment with description as FASTA text file0.62 secPassed
save single contig fragment with null fields as FASTA text file0.59 secPassed
save single contig fragment with null fragment number as FASTA text file0.62 secPassed
save single contig fragment with null number of fragments in contig as FASTA text file0.86 secPassed
testing nondeterminism from reduce when recovering referencestring1 secPassed
transform contigs to coverage genomic dataset1.3 secPassed
transform contigs to feature genomic dataset1.3 secPassed
transform contigs to fragment genomic dataset1.5 secPassed
transform contigs to genotype genomic dataset2.3 secPassed
transform contigs to read genomic dataset1.4 secPassed
transform contigs to variant context genomic dataset0.64 secPassed
transform contigs to variant genomic dataset1.6 secPassed
union two ncf genomic datasets together1.4 secPassed