Console Output

Started by upstream project "ADAM-prb" build number 3124
originally caused by:
 GitHub pull request #2276 of commit 4e4ae1a6d98e79aa1e304ee7297abd5a7c8634ab automatically merged.
[EnvInject] - Loading node environment variables.
Building remotely on amp-jenkins-staging-worker-02 (ubuntu ubuntu-gpu ubuntu-avx2 staging-02 staging) in workspace /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu
Wiping out workspace first.
Cloning the remote Git repository
Cloning repository https://github.com/bigdatagenomics/adam.git
 > git init /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu # timeout=10
Fetching upstream changes from https://github.com/bigdatagenomics/adam.git
 > git --version # timeout=10
 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/heads/*:refs/remotes/origin/* # timeout=15
 > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10
 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10
 > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10
Fetching upstream changes from https://github.com/bigdatagenomics/adam.git
 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/*:refs/remotes/origin/pr/* # timeout=15
Checking out Revision 19acc911f2995a8df016c4a624f383deded47f6a (origin/pr/2276/merge)
 > git config core.sparsecheckout # timeout=10
 > git checkout -f 19acc911f2995a8df016c4a624f383deded47f6a
First time build. Skipping changelog.
[ubuntu] $ /bin/bash /tmp/hudson3497910527384017255.sh
+ set -e
+ unset SPARK_TESTING
+ export JAVA_HOME=/usr/lib/jvm/java-8-oracle
+ JAVA_HOME=/usr/lib/jvm/java-8-oracle
+ export CONDA_BIN=/home/anaconda/bin/
+ CONDA_BIN=/home/anaconda/bin/
+ export PATH=/usr/lib/jvm/java-8-oracle/bin/:/home/anaconda/bin/:/home/jenkins/tools/hudson.tasks.Maven_MavenInstallation/Maven_3.6.3/bin/:/home/jenkins/gems/bin:/usr/local/go/bin:/home/jenkins/go-projects/bin:/home/jenkins/anaconda2/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games
+ PATH=/usr/lib/jvm/java-8-oracle/bin/:/home/anaconda/bin/:/home/jenkins/tools/hudson.tasks.Maven_MavenInstallation/Maven_3.6.3/bin/:/home/jenkins/gems/bin:/usr/local/go/bin:/home/jenkins/go-projects/bin:/home/jenkins/anaconda2/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games
+ set +x
+ /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/scripts/jenkins-test

# make a tempdir for writing maven cruft to
ADAM_MVN_TMP_DIR=$(mktemp -d -t adamTestMvnXXXXXXX)
mktemp -d -t adamTestMvnXXXXXXX
++ mktemp -d -t adamTestMvnXXXXXXX
+ ADAM_MVN_TMP_DIR=/tmp/adamTestMvnp6vi9tr

# add this tempdir to the poms...
find . -name pom.xml \
    -exec sed -i.bak \
    -e "s:sun.io.serialization.extendedDebugInfo=true:sun.io.serialization.extendedDebugInfo=true -Djava.io.tmpdir=${ADAM_MVN_TMP_DIR}:g" \
    {} \;
+ find . -name pom.xml -exec sed -i.bak -e 's:sun.io.serialization.extendedDebugInfo=true:sun.io.serialization.extendedDebugInfo=true -Djava.io.tmpdir=/tmp/adamTestMvnp6vi9tr:g' '{}' ';'
find . -name "*.bak" -exec rm -f {} \;
+ find . -name '*.bak' -exec rm -f '{}' ';'

# variable declarations
export PATH=${JAVA_HOME}/bin/:${PATH}
+ export PATH=/usr/lib/jvm/java-8-oracle/bin/:/usr/lib/jvm/java-8-oracle/bin/:/home/anaconda/bin/:/home/jenkins/tools/hudson.tasks.Maven_MavenInstallation/Maven_3.6.3/bin/:/home/jenkins/gems/bin:/usr/local/go/bin:/home/jenkins/go-projects/bin:/home/jenkins/anaconda2/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games
+ PATH=/usr/lib/jvm/java-8-oracle/bin/:/usr/lib/jvm/java-8-oracle/bin/:/home/anaconda/bin/:/home/jenkins/tools/hudson.tasks.Maven_MavenInstallation/Maven_3.6.3/bin/:/home/jenkins/gems/bin:/usr/local/go/bin:/home/jenkins/go-projects/bin:/home/jenkins/anaconda2/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games
export MAVEN_OPTS="-Xmx1536m -XX:MaxPermSize=1g -Dfile.encoding=utf-8"
+ export 'MAVEN_OPTS=-Xmx1536m -XX:MaxPermSize=1g -Dfile.encoding=utf-8'
+ MAVEN_OPTS='-Xmx1536m -XX:MaxPermSize=1g -Dfile.encoding=utf-8'
DIR=$( cd $( dirname ${BASH_SOURCE[0]} ) && pwd )
 cd $( dirname ${BASH_SOURCE[0]} ) && pwd 
 dirname ${BASH_SOURCE[0]} 
+++ dirname /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/scripts/jenkins-test
++ cd /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/scripts
++ pwd
+ DIR=/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/scripts
PROJECT_ROOT=${DIR}/..
+ PROJECT_ROOT=/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/scripts/..
VERSION=$(grep "<version>" ${PROJECT_ROOT}/pom.xml  | head -2 | tail -1 | sed 's/ *<version>//g' | sed 's/<\/version>//g')
grep "<version>" ${PROJECT_ROOT}/pom.xml  | head -2 | tail -1 | sed 's/ *<version>//g' | sed 's/<\/version>//g'
++ grep '<version>' /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/scripts/../pom.xml
++ head -2
++ tail -1
++ sed 's/ *<version>//g'
++ sed 's/<\/version>//g'
+ VERSION=0.33.0-SNAPSHOT

# is the hadoop version set?
if ! [[ ${HADOOP_VERSION} ]];
then
    echo "HADOOP_VERSION environment variable is not set."
    echo "Please set this variable before running."
    
    exit 1
fi
+ [[ -n 2.7.5 ]]

# is the spark version set?
if ! [[ ${SPARK_VERSION} ]];
then
    echo "SPARK_VERSION environment variable is not set."
    echo "Please set this variable before running."
    
    exit 1
fi
+ [[ -n 2.4.6 ]]

set -e
+ set -e

# move to Scala 2.11 if requested
if [ ${SCALA_VERSION} == 2.11 ];
then
    set +e
    ./scripts/move_to_scala_2.11.sh
    set -e
fi
+ '[' 2.11 == 2.11 ']'
+ set +e
+ ./scripts/move_to_scala_2.11.sh
+ set -e

# move to Scala 2.12 if requested
if [ ${SCALA_VERSION} == 2.12 ];
then
    set +e
    ./scripts/move_to_scala_2.12.sh
    set -e
fi
+ '[' 2.11 == 2.12 ']'

# move to Spark 2.x if requested
if [ ${SPARK_VERSION} == 2.4.6 ];
then
    set +e
    ./scripts/move_to_spark_2.sh
    set -e
fi
+ '[' 2.4.6 == 2.4.6 ']'
+ set +e
+ ./scripts/move_to_spark_2.sh
+ set -e

# move to Spark 3.x if requested
if [ ${SPARK_VERSION} == 3.0.1 ];
then
    set +e
    ./scripts/move_to_spark_3.sh
    set -e
fi
+ '[' 2.4.6 == 3.0.1 ']'

# print versions
echo "Testing ADAM version ${VERSION} on Spark ${SPARK_VERSION} and Hadoop ${HADOOP_VERSION}"
+ echo 'Testing ADAM version 0.33.0-SNAPSHOT on Spark 2.4.6 and Hadoop 2.7.5'
Testing ADAM version 0.33.0-SNAPSHOT on Spark 2.4.6 and Hadoop 2.7.5

# first, build the sources, run the unit tests, and generate a coverage report
mvn clean \
    -Dhadoop.version=${HADOOP_VERSION}
+ mvn clean -Dhadoop.version=2.7.5
Java HotSpot(TM) 64-Bit Server VM warning: ignoring option MaxPermSize=1g; support was removed in 8.0
[INFO] Scanning for projects...
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Build Order:
[INFO] 
[INFO] ADAM_2.11                                                          [pom]
[INFO] ADAM_2.11: Shader workaround                                       [jar]
[INFO] ADAM_2.11: Avro-to-Dataset codegen utils                           [jar]
[INFO] ADAM_2.11: Core                                                    [jar]
[INFO] ADAM_2.11: APIs for Java, Python                                   [jar]
[INFO] ADAM_2.11: CLI                                                     [jar]
[INFO] ADAM_2.11: Assembly                                                [jar]
[INFO] 
[INFO] ------------< org.bdgenomics.adam:adam-parent-spark2_2.11 >-------------
[INFO] Building ADAM_2.11 0.33.0-SNAPSHOT                                 [1/7]
[INFO] --------------------------------[ pom ]---------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ adam-parent-spark2_2.11 ---
[INFO] 
[INFO] -------------< org.bdgenomics.adam:adam-shade-spark2_2.11 >-------------
[INFO] Building ADAM_2.11: Shader workaround 0.33.0-SNAPSHOT              [2/7]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ adam-shade-spark2_2.11 ---
[INFO] 
[INFO] ------------< org.bdgenomics.adam:adam-codegen-spark2_2.11 >------------
[INFO] Building ADAM_2.11: Avro-to-Dataset codegen utils 0.33.0-SNAPSHOT  [3/7]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ adam-codegen-spark2_2.11 ---
[INFO] 
[INFO] -------------< org.bdgenomics.adam:adam-core-spark2_2.11 >--------------
[INFO] Building ADAM_2.11: Core 0.33.0-SNAPSHOT                           [4/7]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ adam-core-spark2_2.11 ---
[INFO] 
[INFO] -------------< org.bdgenomics.adam:adam-apis-spark2_2.11 >--------------
[INFO] Building ADAM_2.11: APIs for Java, Python 0.33.0-SNAPSHOT          [5/7]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ adam-apis-spark2_2.11 ---
[INFO] 
[INFO] --------------< org.bdgenomics.adam:adam-cli-spark2_2.11 >--------------
[INFO] Building ADAM_2.11: CLI 0.33.0-SNAPSHOT                            [6/7]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ adam-cli-spark2_2.11 ---
[INFO] 
[INFO] -----------< org.bdgenomics.adam:adam-assembly-spark2_2.11 >------------
[INFO] Building ADAM_2.11: Assembly 0.33.0-SNAPSHOT                       [7/7]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ adam-assembly-spark2_2.11 ---
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary for ADAM_2.11 0.33.0-SNAPSHOT:
[INFO] 
[INFO] ADAM_2.11 .......................................... SUCCESS [  0.198 s]
[INFO] ADAM_2.11: Shader workaround ....................... SUCCESS [  0.012 s]
[INFO] ADAM_2.11: Avro-to-Dataset codegen utils ........... SUCCESS [  0.008 s]
[INFO] ADAM_2.11: Core .................................... SUCCESS [  0.014 s]
[INFO] ADAM_2.11: APIs for Java, Python ................... SUCCESS [  0.002 s]
[INFO] ADAM_2.11: CLI ..................................... SUCCESS [  0.024 s]
[INFO] ADAM_2.11: Assembly ................................ SUCCESS [  0.002 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESS
[INFO] ------------------------------------------------------------------------
[INFO] Total time:  0.428 s
[INFO] Finished at: 2020-10-19T18:56:45-07:00
[INFO] ------------------------------------------------------------------------
    
# if this is a pull request, we need to set the coveralls pr id
if [[ ! -z $ghprbPullId ]];
then
    COVERALLS_PRB_OPTION="-DpullRequest=${ghprbPullId}"
fi
+ [[ ! -z 2276 ]]
+ COVERALLS_PRB_OPTION=-DpullRequest=2276

# coveralls token should not be visible
set +x +v
+ set +x +v
Java HotSpot(TM) 64-Bit Server VM warning: ignoring option MaxPermSize=1g; support was removed in 8.0
[INFO] Scanning for projects...
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Build Order:
[INFO] 
[INFO] ADAM_2.11                                                          [pom]
[INFO] ADAM_2.11: Shader workaround                                       [jar]
[INFO] ADAM_2.11: Avro-to-Dataset codegen utils                           [jar]
[INFO] ADAM_2.11: Core                                                    [jar]
[INFO] ADAM_2.11: APIs for Java, Python                                   [jar]
[INFO] ADAM_2.11: CLI                                                     [jar]
[INFO] ADAM_2.11: Assembly                                                [jar]
[INFO] 
[INFO] ------------< org.bdgenomics.adam:adam-parent-spark2_2.11 >-------------
[INFO] Building ADAM_2.11 0.33.0-SNAPSHOT                                 [1/7]
[INFO] --------------------------------[ pom ]---------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-parent-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-parent-spark2_2.11 ---
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-parent-spark2_2.11 ---
[INFO] Modified 0 of 242 .scala files
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-parent-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-parent-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] >>> scoverage-maven-plugin:1.1.1:report (default-cli) > [scoverage]test @ adam-parent-spark2_2.11 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-parent-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-parent-spark2_2.11 ---
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-parent-spark2_2.11 ---
[INFO] Modified 0 of 242 .scala files
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:pre-compile (default-cli) @ adam-parent-spark2_2.11 ---
[INFO] Skipping SCoverage execution for project with packaging type 'pom'
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-parent-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:post-compile (default-cli) @ adam-parent-spark2_2.11 ---
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-parent-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] <<< scoverage-maven-plugin:1.1.1:report (default-cli) < [scoverage]test @ adam-parent-spark2_2.11 <<<
[INFO] 
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:report (default-cli) @ adam-parent-spark2_2.11 ---
[INFO] 
[INFO] -------------< org.bdgenomics.adam:adam-shade-spark2_2.11 >-------------
[INFO] Building ADAM_2.11: Shader workaround 0.33.0-SNAPSHOT              [2/7]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-shade-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-shade-spark2_2.11 ---
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-shade-spark2_2.11 ---
[INFO] Modified 0 of 0 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-shade-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-shade/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-shade-spark2_2.11 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-shade/src/main/java:-1: info: compiling
[INFO] Compiling 1 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-shade/target/2.11.12/classes at 1603159017884
[INFO] prepare-compile in 0 s
[INFO] compile in 1 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-shade-spark2_2.11 ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 1 source file to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-shade/target/2.11.12/classes
[INFO] 
[INFO] --- plexus-component-metadata:1.5.5:generate-metadata (default) @ adam-shade-spark2_2.11 ---
[INFO] Discovered 1 component descriptors(s)
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-shade-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-shade/src/test/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-shade-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-shade-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-shade-spark2_2.11 ---
[INFO] No tests to run.
[INFO] 
[INFO] >>> scoverage-maven-plugin:1.1.1:report (default-cli) > [scoverage]test @ adam-shade-spark2_2.11 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-shade-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-shade-spark2_2.11 ---
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-shade-spark2_2.11 ---
[INFO] Modified 0 of 0 .scala files
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:pre-compile (default-cli) @ adam-shade-spark2_2.11 ---
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-shade-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-shade/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-shade-spark2_2.11 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-shade/src/main/java:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-shade/target/generated-sources/annotations:-1: info: compiling
[INFO] Compiling 1 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-shade/target/2.11.12/scoverage-classes at 1603159020412
[INFO] [info] Cleaning datadir [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-shade/target/scoverage-data]
[INFO] [info] Beginning coverage instrumentation
[INFO] [info] Instrumentation completed [0 statements]
[INFO] [info] Wrote instrumentation file [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-shade/target/scoverage-data/scoverage.coverage.xml]
[INFO] [info] Will write measurement data to [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-shade/target/scoverage-data]
[INFO] prepare-compile in 0 s
[INFO] compile in 1 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-shade-spark2_2.11 ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 1 source file to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-shade/target/2.11.12/scoverage-classes
[INFO] 
[INFO] --- plexus-component-metadata:1.5.5:generate-metadata (default) @ adam-shade-spark2_2.11 ---
[INFO] Discovered 1 component descriptors(s)
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:post-compile (default-cli) @ adam-shade-spark2_2.11 ---
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-shade-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-shade/src/test/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-shade-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-shade-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-shade-spark2_2.11 ---
[INFO] No tests to run.
[INFO] 
[INFO] <<< scoverage-maven-plugin:1.1.1:report (default-cli) < [scoverage]test @ adam-shade-spark2_2.11 <<<
[INFO] 
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:report (default-cli) @ adam-shade-spark2_2.11 ---
[INFO] [scoverage] Generating cobertura XML report...
[INFO] [scoverage] Generating scoverage XML report...
[INFO] [scoverage] Generating scoverage HTML report...
[INFO] 
[INFO] ------------< org.bdgenomics.adam:adam-codegen-spark2_2.11 >------------
[INFO] Building ADAM_2.11: Avro-to-Dataset codegen utils 0.33.0-SNAPSHOT  [3/7]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-codegen-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-codegen-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-codegen-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-codegen/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-codegen-spark2_2.11 ---
[INFO] Modified 0 of 4 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-codegen-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-codegen/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-codegen-spark2_2.11 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-codegen/src/main/scala:-1: info: compiling
[INFO] Compiling 4 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-codegen/target/2.11.12/classes at 1603159022223
[INFO] prepare-compile in 0 s
[INFO] compile in 3 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-codegen-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-codegen-spark2_2.11 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-codegen/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-codegen-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-codegen/src/test/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-codegen-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-codegen-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-codegen-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-codegen-spark2_2.11 ---
Discovery starting.
Discovery completed in 57 milliseconds.
Run starting. Expected test count is: 0
DiscoverySuite:
Run completed in 82 milliseconds.
Total number of tests run: 0
Suites: completed 1, aborted 0
Tests: succeeded 0, failed 0, canceled 0, ignored 0, pending 0
No tests were executed.
[INFO] 
[INFO] >>> scoverage-maven-plugin:1.1.1:report (default-cli) > [scoverage]test @ adam-codegen-spark2_2.11 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-codegen-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-codegen-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-codegen-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-codegen/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-codegen-spark2_2.11 ---
[INFO] Modified 0 of 4 .scala files
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:pre-compile (default-cli) @ adam-codegen-spark2_2.11 ---
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-codegen-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-codegen/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-codegen-spark2_2.11 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-codegen/src/main/scala:-1: info: compiling
[INFO] Compiling 4 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-codegen/target/2.11.12/scoverage-classes at 1603159026632
[INFO] [info] Cleaning datadir [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-codegen/target/scoverage-data]
[INFO] [info] Beginning coverage instrumentation
[INFO] [info] Instrumentation completed [0 statements]
[INFO] [info] Wrote instrumentation file [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-codegen/target/scoverage-data/scoverage.coverage.xml]
[INFO] [info] Will write measurement data to [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-codegen/target/scoverage-data]
[INFO] prepare-compile in 0 s
[INFO] compile in 3 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-codegen-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:post-compile (default-cli) @ adam-codegen-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-codegen-spark2_2.11 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-codegen/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-codegen-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-codegen/src/test/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-codegen-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-codegen-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-codegen-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-codegen-spark2_2.11 ---
Discovery starting.
Discovery completed in 49 milliseconds.
Run starting. Expected test count is: 0
DiscoverySuite:
Run completed in 74 milliseconds.
Total number of tests run: 0
Suites: completed 1, aborted 0
Tests: succeeded 0, failed 0, canceled 0, ignored 0, pending 0
No tests were executed.
[INFO] 
[INFO] <<< scoverage-maven-plugin:1.1.1:report (default-cli) < [scoverage]test @ adam-codegen-spark2_2.11 <<<
[INFO] 
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:report (default-cli) @ adam-codegen-spark2_2.11 ---
[INFO] [scoverage] Generating cobertura XML report...
[INFO] [scoverage] Generating scoverage XML report...
[INFO] [scoverage] Generating scoverage HTML report...
[INFO] 
[INFO] -------------< org.bdgenomics.adam:adam-core-spark2_2.11 >--------------
[INFO] Building ADAM_2.11: Core 0.33.0-SNAPSHOT                           [4/7]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-core-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-core-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-core-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/main/scala added.
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/target/generated-sources/src/main/scala added.
[INFO] 
[INFO] --- exec-maven-plugin:1.5.0:java (generate-scala-products) @ adam-core-spark2_2.11 ---
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] 
[INFO] --- exec-maven-plugin:1.5.0:java (generate-scala-projection-fields) @ adam-core-spark2_2.11 ---
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-core-spark2_2.11 ---
[INFO] Modified 2 of 204 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-core-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-core-spark2_2.11 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/main/java:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/main/scala:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/target/generated-sources/src/main/scala:-1: info: compiling
[INFO] Compiling 140 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/target/2.11.12/classes at 1603159036517
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicDataset.scala:3091: warning: no valid targets for annotation on value uTag - it is discarded unused. You may specify targets with meta-annotations, e.g. @(transient @getter)
[WARNING]   @transient val uTag: TypeTag[U]
[WARNING]    ^
[WARNING] warning: there were 53 deprecation warnings; re-run with -deprecation for details
[WARNING] warning: there were 5 feature warnings; re-run with -feature for details
[WARNING] three warnings found
[INFO] prepare-compile in 0 s
[INFO] compile in 30 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-core-spark2_2.11 ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 6 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/target/2.11.12/classes
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-core-spark2_2.11 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-core-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 152 resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-core-spark2_2.11 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/test/scala:-1: info: compiling
[INFO] Compiling 70 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/target/2.11.12/test-classes at 1603159068336
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/algorithms/consensus/NormalizationUtilsSuite.scala:59: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]       .build()
[WARNING]             ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/algorithms/consensus/NormalizationUtilsSuite.scala:61: warning: method richRecordToRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     val new_cigar = NormalizationUtils.leftAlignIndel(read)
[WARNING]                                                       ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/algorithms/consensus/NormalizationUtilsSuite.scala:66: warning: method richRecordToRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     assert(RichAlignment(read).samtoolsCigar.getReadLength === new_cigar.getReadLength)
[WARNING]                          ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/SAMRecordConverterSuite.scala:54: warning: method getNotPrimaryAlignmentFlag in class SAMRecord is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(!testAlignment.getPrimaryAlignment === testSAMRecord.getNotPrimaryAlignmentFlag)
[WARNING]                                                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/SAMRecordConverterSuite.scala:89: warning: method getNotPrimaryAlignmentFlag in class SAMRecord is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(!testAlignment.getPrimaryAlignment === testSAMRecord.getNotPrimaryAlignmentFlag)
[WARNING]                                                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:53: warning: method extractDictionary in object SAMSequenceDictionaryExtractor is deprecated: see corresponding Javadoc for more information.
[WARNING]     SequenceDictionary(SAMSequenceDictionaryExtractor.extractDictionary(new File(path)))
[WARNING]                                                       ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/CoverageSuite.scala:37: warning: variable start in class Feature is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(coverageAfterConversion.start == featureToConvert.start)
[WARNING]                                                              ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/CoverageSuite.scala:38: warning: variable end in class Feature is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(coverageAfterConversion.end == featureToConvert.end)
[WARNING]                                                            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/CoverageSuite.scala:40: warning: variable score in class Feature is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(coverageAfterConversion.count == featureToConvert.score)
[WARNING]                                                              ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/CoverageSuite.scala:57: warning: variable start in class Feature is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(coverageAfterConversion.start == featureToConvert.start)
[WARNING]                                                              ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/CoverageSuite.scala:58: warning: variable end in class Feature is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(coverageAfterConversion.end == featureToConvert.end)
[WARNING]                                                            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/CoverageSuite.scala:60: warning: variable score in class Feature is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(coverageAfterConversion.count == featureToConvert.score)
[WARNING]                                                              ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/CoverageSuite.scala:61: warning: variable sampleId in class Feature is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(coverageAfterConversion.optSampleId == Some(featureToConvert.sampleId))
[WARNING]                                                                         ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/MdTagSuite.scala:194: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     assert(read.mdTag.get.end === read.getEnd)
[WARNING]            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/MdTagSuite.scala:475: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     val tag = read.mdTag.get
[WARNING]               ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/MdTagSuite.scala:482: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     assert(tag.getReference(read) === "AAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGGGGAAAAAAAAAAGGGGGGGGGGAAAAAAAAAAA")
[WARNING]                             ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/MdTagSuite.scala:495: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     val tag = read.mdTag.get
[WARNING]               ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/MdTagSuite.scala:496: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     assert(tag.getReference(read, withGaps = true) === "AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGGGGAAAAAAAAAAA")
[WARNING]                             ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/MdTagSuite.scala:510: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     val newTag = MdTag.moveAlignment(read, newCigar)
[WARNING]                                      ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/MdTagSuite.scala:526: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     val newTag = MdTag.moveAlignment(read, newCigar, "AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA", 100L)
[WARNING]                                      ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/MdTagSuite.scala:544: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     val newTag = MdTag.moveAlignment(read, newCigar, "GGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA", 100L)
[WARNING]                                      ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/MdTagSuite.scala:562: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     val newTag = MdTag.moveAlignment(read, newCigar, "AAAAAAAAAAGGGGGGGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA", 100L)
[WARNING]                                      ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/MdTagSuite.scala:580: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     val newTag = MdTag.moveAlignment(read, newCigar, "AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA", 100L)
[WARNING]                                      ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/SequenceDictionarySuite.scala:48: warning: method extractDictionary in object SAMSequenceDictionaryExtractor is deprecated: see corresponding Javadoc for more information.
[WARNING]     val ssd = SAMSequenceDictionaryExtractor.extractDictionary(new File(path))
[WARNING]                                              ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/SequenceDictionarySuite.scala:62: warning: method extractDictionary in object SAMSequenceDictionaryExtractor is deprecated: see corresponding Javadoc for more information.
[WARNING]     val ssd = SAMSequenceDictionaryExtractor.extractDictionary(new File(path))
[WARNING]                                              ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/SequenceDictionarySuite.scala:75: warning: method extractDictionary in object SAMSequenceDictionaryExtractor is deprecated: see corresponding Javadoc for more information.
[WARNING]     val ssd = SAMSequenceDictionaryExtractor.extractDictionary(new File(path))
[WARNING]                                              ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTargetSuite.scala:83: warning: method richRecordToRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     assert(TargetOrdering.contains(targets.head, read))
[WARNING]                                                  ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTargetSuite.scala:191: warning: method richRecordToRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]         if (read.getStart < 105) {
[WARNING]             ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTargetSuite.scala:194: warning: method richRecordToRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]           assert(targets.head.readRange.start === read.getStart)
[WARNING]                                                   ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTargetSuite.scala:195: warning: method richRecordToRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]           assert(targets.head.readRange.end === read.getEnd)
[WARNING]                                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTargetSuite.scala:196: warning: method richRecordToRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]           assert(check_indel(targets.head, read))
[WARNING]                                            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:697: warning: variable end in class Genotype is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(first.end === 16157602L)
[WARNING]                  ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:698: warning: variable end in class Variant is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(first.variant.end === 16157602L)
[WARNING]                          ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:698: warning: variable variant in class Genotype is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(first.variant.end === 16157602L)
[WARNING]                  ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:699: warning: variable annotation in class Variant is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(first.variant.annotation === null)
[WARNING]                          ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:699: warning: variable variant in class Genotype is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(first.variant.annotation === null)
[WARNING]                  ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:710: warning: variable end in class Genotype is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(firstVcfGenotype.end === 16157602L)
[WARNING]                             ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:712: warning: variable end in class Variant is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(firstVcfGenotype.variant.end === 16157602L)
[WARNING]                                     ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:712: warning: variable variant in class Genotype is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(firstVcfGenotype.variant.end === 16157602L)
[WARNING]                             ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:714: warning: variable annotation in class Variant is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(firstVcfGenotype.variant.annotation === null)
[WARNING]                                     ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:714: warning: variable variant in class Genotype is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(firstVcfGenotype.variant.annotation === null)
[WARNING]                             ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:745: warning: variable end in class Genotype is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(first.end === 16157602L)
[WARNING]                  ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:746: warning: variable end in class Variant is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(first.variant.end === 16157602L)
[WARNING]                          ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:746: warning: variable variant in class Genotype is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(first.variant.end === 16157602L)
[WARNING]                  ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:747: warning: variable attributes in class VariantAnnotation is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(first.variant.annotation.attributes.get("END") === "16157602")
[WARNING]                                     ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:747: warning: variable annotation in class Variant is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(first.variant.annotation.attributes.get("END") === "16157602")
[WARNING]                          ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:747: warning: variable variant in class Genotype is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(first.variant.annotation.attributes.get("END") === "16157602")
[WARNING]                  ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:758: warning: variable end in class Genotype is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(firstVcfGenotype.end === 16157602L)
[WARNING]                             ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:759: warning: variable end in class Variant is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(firstVcfGenotype.variant.end === 16157602L)
[WARNING]                                     ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:759: warning: variable variant in class Genotype is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(firstVcfGenotype.variant.end === 16157602L)
[WARNING]                             ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:760: warning: variable attributes in class VariantAnnotation is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(firstVcfGenotype.variant.annotation.attributes.get("END") === "16157602")
[WARNING]                                                ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:760: warning: variable annotation in class Variant is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(firstVcfGenotype.variant.annotation.attributes.get("END") === "16157602")
[WARNING]                                     ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:760: warning: variable variant in class Genotype is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(firstVcfGenotype.variant.annotation.attributes.get("END") === "16157602")
[WARNING]                             ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/VariantContextDatasetSuite.scala:181: warning: variable start in class Genotype is deprecated: see corresponding Javadoc for more information.
[WARNING]     val filtered = vcs.toGenotypes().rdd.filter(_.start == 66631043)
[WARNING]                                                   ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichAlignmentSuite.scala:31: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     assert(recordWithoutClipping.unclippedStart == 42L)
[WARNING]            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichAlignmentSuite.scala:32: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     assert(recordWithClipping.unclippedStart == 40L)
[WARNING]            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichAlignmentSuite.scala:33: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     assert(recordWithHardClipping.unclippedStart == 37L)
[WARNING]            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichAlignmentSuite.scala:41: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     assert(recordWithoutClipping.unclippedEnd == 20L)
[WARNING]            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichAlignmentSuite.scala:42: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     assert(recordWithClipping.unclippedEnd == 20L)
[WARNING]            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichAlignmentSuite.scala:43: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     assert(recordWithHardClipping.unclippedEnd == 20L)
[WARNING]            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichAlignmentSuite.scala:49: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     assert(rec.tags.size === 2)
[WARNING]            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichAlignmentSuite.scala:50: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     assert(rec.tags(0) === Attribute("XX", TagType.Integer, 3))
[WARNING]            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichAlignmentSuite.scala:51: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     assert(rec.tags(1) === Attribute("YY", TagType.String, "foo"))
[WARNING]            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichAlignmentSuite.scala:57: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     val overlaps = unmappedRead.overlapsReferencePosition(ReferencePosition("chr1", 10))
[WARNING]                    ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichCigarSuite.scala:34: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     val newCigar = RichCigar(new Cigar(read.samtoolsCigar.getCigarElements)).moveLeft(1)
[WARNING]                                        ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichCigarSuite.scala:37: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     assert(newCigar2.cigar.getReadLength == read.samtoolsCigar.getReadLength)
[WARNING]                                             ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichCigarSuite.scala:49: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     val newCigar = RichCigar(new Cigar(read.samtoolsCigar.getCigarElements)).moveLeft(1)
[WARNING]                                        ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichCigarSuite.scala:52: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     assert(newCigar2.cigar.getReadLength == read.samtoolsCigar.getReadLength)
[WARNING]                                             ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichCigarSuite.scala:64: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     val newCigar = RichCigar(new Cigar(read.samtoolsCigar.getCigarElements)).moveLeft(1)
[WARNING]                                        ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichCigarSuite.scala:66: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     assert(newCigar.cigar.getReadLength == read.samtoolsCigar.getReadLength)
[WARNING]                                            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichCigarSuite.scala:78: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     val newCigar = RichCigar(new Cigar(read.samtoolsCigar.getCigarElements)).moveLeft(1)
[WARNING]                                        ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichCigarSuite.scala:80: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     assert(newCigar.cigar.getReadLength == read.samtoolsCigar.getReadLength)
[WARNING]                                            ^
[WARNING] 72 warnings found
[INFO] prepare-compile in 0 s
[INFO] compile in 33 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-core-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-core-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-core-spark2_2.11 ---
Discovery starting.
Discovery completed in 2 seconds, 305 milliseconds.
Run starting. Expected test count is: 1175
RepairPartitionsSuite:
- don't pull from the first partition
- properly handle pulling from an empty iterator
- gets a single read from the partition if there are no other reads in the pair
- gets all the reads from a pair from the start of a partition
- properly handle dropping from an empty iterator
- don't drop from the first partition
- drop a single read from the partition if there are no other reads in the pair
- drops all the reads from a pair from the start of a partition
- only append to the first partition
- drop a single read from the partition and append read when in the middle
- drop reads from the start and don't append when in the last partition
- can't have more records than number of partitions
- unroll array for broadcast
2020-10-19 18:58:25 WARN  Utils:66 - Your hostname, amp-jenkins-staging-worker-02 resolves to a loopback address: 127.0.1.1; using 192.168.10.32 instead (on interface eno1)
2020-10-19 18:58:25 WARN  Utils:66 - Set SPARK_LOCAL_IP if you need to bind to another address
2020-10-19 18:58:25 WARN  NativeCodeLoader:62 - Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
- move pairs around an rdd
FlagStatSuite:
- Standard FlagStat test
ModPartitionerSuite:
- report number of partitions correctly
- partition a number that is lower than the number of partitions and positive
- partition a number that is greater than the number of partitions and positive
- partition a number that is lower than the number of partitions and negative
- partition a number that is greater than the number of partitions and negative
- fire an exception if input is not an integer
TwoBitFileSuite:
- correctly read sequence from .2bit file
- correctly return masked sequences from .2bit file
- correctly return Ns from .2bit file
- correctly calculates sequence dictionary
NonoverlappingRegionsSuite:
- alternating returns an alternating seq of items
- Single region returns itself
- Two adjacent regions will be merged
- Nonoverlapping regions will all be returned
- Many overlapping regions will all be merged
- ADAMRecords return proper references
ReferencePositionSuite:
- create reference position from mapped read
- create reference position from variant
- create reference position from genotype
- create reference position from variant starting at vcf 0
- create reference position from genotype starting at vcf 0
ConsensusGeneratorFromReadsSuite:
- checking search for consensus list for artificial reads
FragmentConverterSuite:
- build a fragment collector and convert to a read
- if a fragment isn't associated with a contig, don't get a fragment collector
- convert an rdd of discontinuous fragments, all from the same contig
- convert an rdd of contiguous fragments, all from the same contig
- convert an rdd of varied fragments from multiple contigs
FileMergerSuite:
- cannot write both empty gzip block and cram eof
- buffer size must be non-negative
RichAlignmentSuite:
- Unclipped Start
- Unclipped End
- tags contains optional fields
- read overlap unmapped read
- read overlap reference position
- read overlap same position different contig
SingleReadBucketSuite:
- convert unmapped pair to fragment
- convert proper pair to fragment
- convert read pair to fragment with first of pair chimeric read
RecalibrationTableSuite:
- look up quality scores in table
FlankSlicesSuite:
- don't put flanks on non-adjacent slices
- put flanks on adjacent slices
InterleavedFastqInputFormatSuite:
- interleaved FASTQ hadoop reader: interleaved_fastq_sample1.ifq->interleaved_fastq_sample1.ifq.output
- interleaved FASTQ hadoop reader: interleaved_fastq_sample2.ifq->interleaved_fastq_sample2.ifq.output
- interleaved FASTQ hadoop reader: interleaved_fastq_sample3.ifq->interleaved_fastq_sample3.ifq.output
- interleaved FASTQ hadoop reader: interleaved_fastq_sample4.ifq->interleaved_fastq_sample4.ifq.output
- interleaved FASTQ hadoop reader: interleaved_fastq_sample5.ifq->interleaved_fastq_sample5.ifq.output
TreeRegionJoinSuite:
- run a join between data on a single contig
ReferenceRegionSuite:
- cannot create an empty predicate
- parse empty string throws IllegalArgumentException
- parse contigName only string into reference regions
- parse to end strings into reference regions
- parse string into reference regions
- contains(: ReferenceRegion)
- contains(: ReferencePosition)
- merge
- overlaps and covers
- overlapsBy and coversBy
- distance(: ReferenceRegion)
- distance(: ReferencePosition)
- unstrandedDistance
- subtract fails on non-overlapping and non-covering regions
- subtract
- create region from unmapped read fails
- create region from read with null alignment positions fails
- create stranded region from unmapped read fails
- create stranded region from read with null alignment positions fails
- create stranded region from read with null alignment strand fails
- create stranded region from read on forward strand
- create stranded region from read on reverse strand
- create region from mapped read contains read start and end
- validate that adjacent regions can be merged
- validate that non-adjacent regions cannot be merged
- validate that nearby regions can be merged
- validate that non-nearby regions cannot be merged
- compute convex hull of two sets
- region name is sanitized when creating region from read
- intersection fails on non-overlapping regions
- intersection fails when minOverlap is not met
- compute intersection
- overlap tests for oriented reference region
- check the width of a reference region
- make a reference region for a variant or genotype
- make a reference region for a variant or genotype starting at VCF 0
- uniformly pad a reference region
- uniformly pad a reference region into negative coordinate space, ensure non negative start
- unevenly pad a reference region
- unevenly pad a reference region into negative coordinate space, ensure non negative start
- can build an open ended reference region
- can build an open ended reference region with strand
- can build a reference region with an open start position
- can build a reference region with an open start position with strand
- can build a reference region that covers the entirety of a contig
- can build a reference region that covers the entirety of a contig with strand
- convert a genotype and then get the reference region
- create region from feature with null alignment positions fails
- create stranded region from feature with null alignment positions fails
- create stranded region from feature with null alignment strand fails
- create stranded region from feature on forward strand
- create stranded region from feature on reverse strand
CoverageDatasetSuite:
- correctly saves coverage
- can read a bed file to coverage
- correctly filters coverage with predicate
- keeps sample metadata
- can read a bed file with multiple samples to coverage
- correctly flatmaps coverage without aggregated bins
- correctly flatmaps coverage with aggregated bins
- collapses coverage records in one partition
- approximately collapses coverage records in multiple partitions
2020-10-19 18:58:45 WARN  DatasetBoundSliceDataset:190 - Saving directly as Parquet from SQL. Options other than compression codec are ignored.
- transform coverage to slice genomic dataset
- transform coverage to feature genomic dataset
2020-10-19 18:58:46 WARN  Utils:66 - Truncated the string representation of a plan since it was too large. This behavior can be adjusted by setting 'spark.debug.maxToStringFields' in SparkEnv.conf.
- transform coverage to fragment genomic dataset
- transform coverage to read genomic dataset
- transform coverage to genotype genomic dataset
- transform coverage to variant genomic dataset
- transform coverage to variant context genomic dataset
- copy coverage rdd
- copy coverage dataset
- copy coverage rdd without sequence dictionary
- copy coverage dataset without sequence dictionary
- transform dataset via java API
RecalibratorSuite:
- don't replace quality if quality was null
- if no covariates, return alignment
- skip recalibration if base is below quality threshold
- recalibrate changed bases above quality threshold
SliceDatasetSuite:
- create a new slice genomic dataset
- create a new slice genomic dataset with sequence dictionary
- merge slices into a sequence genomic dataset
- save as parquet
- round trip as parquet
- save as fasta
- save as single file fasta
- convert slices to reads
- convert slices to sequences
GenotypeDatasetSuite:
- union two genotype genomic datasets together
- round trip to parquet
- round trip to partitioned parquet
- use broadcast join to pull down genotypes mapped to targets
- use right outer broadcast join to pull down genotypes mapped to targets
- use shuffle join to pull down genotypes mapped to targets
- use right outer shuffle join to pull down genotypes mapped to targets
- use left outer shuffle join to pull down genotypes mapped to targets
- use full outer shuffle join to pull down genotypes mapped to targets
- use shuffle join with group by to pull down genotypes mapped to targets
- use right outer shuffle join with group by to pull down genotypes mapped to targets
- convert back to variant contexts
- load parquet to sql, save, re-read from avro
2020-10-19 18:59:13 WARN  DatasetBoundSliceDataset:190 - Saving directly as Parquet from SQL. Options other than compression codec are ignored.
- transform genotypes to slice genomic dataset
- transform genotypes to coverage genomic dataset
- transform genotypes to feature genomic dataset
- transform genotypes to fragment genomic dataset
- transform genotypes to read genomic dataset
- transform genotypes to variant genomic dataset
- transform genotypes to variant context genomic dataset
- loading genotypes then converting to variants yields same output as loading variants
- filter RDD bound genotypes to genotype filters passed
- filter dataset bound genotypes to genotype filters passed
- filter RDD bound genotypes by genotype quality
- filter dataset bound genotypes by genotype quality
- filter RDD bound genotypes by read depth
- filter dataset bound genotypes by read depth
- filter RDD bound genotypes by alternate read depth
- filter dataset bound genotypes by alternate read depth
- filter RDD bound genotypes by reference read depth
- filter dataset bound genotypes by reference read depth
- filter RDD bound genotypes by sample
- filter dataset bound genotypes by sample
- filter RDD bound genotypes by samples
- filter dataset bound genotypes by samples
- filter RDD bound no call genotypes
- filter dataset no call genotypes
- round trip gVCF END attribute without nested variant annotations rdd bound
- round trip gVCF END attribute without nested variant annotations dataset bound
- round trip gVCF END attribute with nested variant annotations rdd bound
- round trip gVCF END attribute with nested variant annotations dataset bound
- transform dataset via java API
FragmentDatasetSuite:
- don't lose any reads when piping interleaved fastq to sam
- don't lose any reads when piping tab5 to sam
- don't lose any reads when piping tab6 to sam
- use broadcast join to pull down fragments mapped to targets
- use right outer broadcast join to pull down fragments mapped to targets
- use shuffle join to pull down fragments mapped to targets
- use right outer shuffle join to pull down fragments mapped to targets
- use left outer shuffle join to pull down fragments mapped to targets
- use full outer shuffle join to pull down fragments mapped to targets
- use shuffle join with group by to pull down fragments mapped to targets
- use right outer shuffle join with group by to pull down fragments mapped to targets
- bin quality scores in fragments
- union two genomic datasets of fragments together
- load parquet to sql, save, re-read from avro
- transform fragments to slice genomic dataset
- transform fragments to coverage genomic dataset
- transform fragments to feature genomic dataset
- transform fragments to read genomic dataset
- transform fragments to genotype genomic dataset
- transform fragments to variant genomic dataset
- transform fragments to variant context genomic dataset
- paired read names with index sequences in read names can group into fragments
- interleaved paired read names with index sequences in read names can group into fragments
- interleaved paired read names with index sequences in read names as fragments
- transform dataset via java API
- dataset and rdd conversion to alignments are equivalent
SingleFastqInputFormatSuite:
- FASTQ hadoop reader: fastq_sample1.fq->single_fastq_sample1.fq.output
- FASTQ hadoop reader: fastq_sample2.fq->single_fastq_sample2.fq.output
- FASTQ hadoop reader: fastq_sample3.fq->single_fastq_sample3.fq.output
- FASTQ hadoop reader: fastq_sample4.fq->single_fastq_sample4.fq.output
VariantContextDatasetSuite:
- load a gvcf with a missing info field set to .
- union two variant context genomic datasets together
- can write, then read in .vcf file
- can write as a single file via simple saveAsVcf method, then read in .vcf file
- can write as a single file via full saveAsVcf method, then read in .vcf file
- transform a vcf file with bad header
- read a vcf file with multi-allelic variants to split
- support VCFs with +Inf/-Inf float values
- support VCFs with `nan` instead of `NaN` float values
- don't lose any variants when piping as VCF
- pipe works with empty partitions
- don't lose any non-default VCF header lines or attributes when piping as VCF
- save a file sorted by contig index
- save a lexicographically sorted file
- save a multiallelic gvcf !!! IGNORED !!!
- test metadata
- save sharded bgzip vcf
- save bgzip vcf as single file
- can't save file with non-vcf extension
- transform variant contexts to slice genomic dataset
- transform variant contexts to coverage genomic dataset
- transform variant contexts to feature genomic dataset
- transform variant contexts to fragment genomic dataset
- transform variant contexts to read genomic dataset
- transform variant contexts to genotype genomic dataset
- transform variant contexts to variant genomic dataset
- save and reload from partitioned parquet
- transform dataset via java API
ConsensusSuite:
- test the insertion of a consensus insertion into a reference
- test the insertion of a consensus deletion into a reference
- inserting empty consensus returns the reference
SequenceDatasetSuite:
- create a new sequence genomic dataset
- create a new sequence genomic dataset with sequence dictionary
- save as parquet
- round trip as parquet
- save as fasta
- save as single file fasta
- convert sequences to reads
- convert sequences to slices
- slice sequences to a maximum length
- slice sequences shorter than maximum length
- filter sequences by overlapping region
- filter sequences failing to overlap region
- filter sequences by overlapping regions
- filter sequences failing to overlap regions
- slice sequences overlapping a smaller region
- slice sequences overlapping a larger region
- slice sequences failing to overlap a region
- slice sequences overlapping smaller regions
- slice sequences overlapping larger regions
- slice sequences failing to overlap regions
AttributeUtilsSuite:
- parseTags returns a reasonable set of tagStrings
- parseTags works with NumericSequence tagType
- empty string is parsed as zero tagStrings
- incorrectly formatted tag throws an exception
- string tag with a ':' in it is correctly parsed
- oq string tag with many ':' in it is correctly parsed
- oq string tag with a ',' in it is correctly parsed
- if a tag is an array but doesn't define it's format, throw
MarkDuplicatesSuite:
- single read
- reads at different positions
- reads at the same position
- reads at the same position with clipping
- reads on reverse strand
- unmapped reads
- read pairs
- read pairs with fragments
- quality scores
- read pairs that cross chromosomes
- single fragment
- fragments at different positions
- fragments at the same position
- fragments at the same position with clipping
- fragments on reverse strand
- unmapped fragments
- read pairs as fragments
- read pairs with fragments as fragments
- chimeric fragments
- inverse pairs
- supplemental reads
TranscriptEffectConverterSuite:
- parse empty transcript effect
- parse empty transcript effect strict validation stringency
- parse invalid transcript effect
- parse invalid transcript effect strict validation stringency
- parse transcript effect
- parse empty list VCF ANN attribute
- parse empty list VCF ANN attribute strict validation stringency
- parse empty string VCF ANN attribute
- parse empty string VCF ANN attribute strict validation stringency
- parse invalid VCF ANN attribute
- parse invalid VCF ANN attribute strict validation stringency
- parse VCF ANN attribute with one transcript effect
- parse VCF ANN attribute with multiple transcript effects
- convert to transcript effect from null VCF ANN attribute in variant context
- convert to transcript effect from empty list VCF ANN attribute in variant context
- convert to transcript effect from empty list VCF ANN attribute in variant context strict validation stringency
- convert to transcript effect from empty string VCF ANN attribute in variant context
- convert to transcript effect from empty string VCF ANN attribute in variant context strict validation stringency
- convert to transcript effect from invalid VCF ANN attribute in variant context
- convert to transcript effect from invalid VCF ANN attribute in variant context strict validation stringency
- convert to transcript effect from VCF ANN attribute with invalid number in variant context lenient validation stringency
- convert to transcript effect from VCF ANN attribute with invalid fraction in variant context lenient validation stringency
- convert to transcript effect from VCF ANN attribute with invalid number in variant context strict validation stringency
2020-10-19 19:00:30 WARN  TranscriptEffectConverter$:190 - Could not convert VCF INFO reserved key ANN value to TranscriptEffect, caught java.lang.NumberFormatException: For input string: "not a number".
- convert to transcript effect from VCF ANN attribute with invalid fraction in variant context strict validation stringency
2020-10-19 19:00:30 WARN  TranscriptEffectConverter$:190 - Could not convert VCF INFO reserved key ANN value to TranscriptEffect, caught java.lang.NumberFormatException: For input string: "not a number".
- convert to transcript effect from VCF ANN attribute in variant context different alt allele
- convert to transcript effect from VCF ANN attribute in variant context same alt allele
- convert to transcript effect from VCF ANN attribute in variant context multiple effects same alt allele
- convert transcript effect to VCF ANN attribute value
- convert transcript effect with null fields to VCF ANN attribute value
2020-10-19 19:00:30 WARN  TranscriptEffectConverter$:190 - Incorrect fractional value ?/2, missing numerator
- convert transcript effect with incorrect fractional value to VCF ANN attribute value
IndelRealignmentTargetSuite:
- checking simple realignment target
- creating simple target from read with deletion
- creating simple target from read with insertion
- joining simple realignment targets on same chr
- joining simple realignment targets on different chr throws exception
- creating targets from three intersecting reads, same indel
- creating targets from three intersecting reads, two different indel
- creating targets from two disjoint reads
- creating targets for artificial reads: one-by-one
- creating targets for artificial reads: all-at-once (merged)
- creating indel targets for mason reads
- additional indel targets taken from consensus generator
NormalizationUtilsSuite:
- cannot move an indel left if there are no bases to it's left
- move a simple indel to farthest position left until bases run out
- move a simple indel to farthest position left, past length of indel
- cannot move a left normalized indel in a short tandem repeat
- move an indel in a short tandem repeat
- move an indel in a short tandem repeat of more than 2 bases, where shift is not an integer multiple of repeated sequence length
- moving a simple read with single deletion that cannot shift
- shift an indel left by 0 in a cigar
- shift an indel left by 1 in a cigar
- do not left align a complex read which is already left aligned
ReadGroupDictionarySuite:
- simple conversion to and from sam read group
- sample name must be set
- simple equality checks
- get samples from read group dictionary
- empty read group is empty
- merging a dictionary with itself should work
- round trip a record with all attributes set
RightOuterTreeRegionJoinSuite:
- Ensure same reference regions get passed together
- Overlapping reference regions
InnerShuffleRegionJoinSuite:
- Overlapping reference regions
- Multiple reference regions do not throw exception
FeatureDatasetSuite:
- round trip GTF format
- save GTF as GFF3 format
- save GTF as BED format
- save GTF as IntervalList format
- save GTF as NarrowPeak format
- save GFF3 as GTF format
- save GFF3 as BED format
- save GFF3 as IntervalList format
- save GFF3 as NarrowPeak format
- round trip GFF3 format
- ignore FASTA sequence in GFF3 file
- save BED as GTF format
- save BED as GFF3 format
- save BED as IntervalList format
- save BED as NarrowPeak format
- round trip BED6 format
- keeps sample metadata
- round trip BED12 format
- save to UCSC BED format
- save IntervalList as GTF format
- save IntervalList as GFF3 format
- save IntervalList as BED format
- save IntervalList as IntervalList format
- save IntervalList as NarrowPeak format
- round trip IntervalList format
- save NarrowPeak as GTF format
- save NarrowPeak as GFF3 format
- save NarrowPeak as BED format
- save NarrowPeak as IntervalList format
- save NarrowPeak as NarrowPeak format
- round trip NarrowPeak format
- sort by reference
- sort by reference and feature fields
- sort gene features by reference and gene structure
- sort transcript features by reference and gene structure
- sort exon features by reference and gene structure
- sort intron features by reference and gene structure
- correctly flatmaps CoverageDataset from FeatureDataset
- use broadcast join to pull down features mapped to targets
- use right outer broadcast join to pull down features mapped to targets
- use shuffle join to pull down features mapped to targets
- use right outer shuffle join to pull down features mapped to targets
- use left outer shuffle join to pull down features mapped to targets
- use full outer shuffle join to pull down features mapped to targets
- use shuffle join with group by to pull down features mapped to targets
- use right outer shuffle join with group by to pull down features mapped to targets
- union two feature rdds together
- obtain sequence dictionary contig lengths from header in IntervalList format
- don't lose any features when piping as BED format
- don't lose any features when piping as GTF format
- don't lose any features when piping as GFF3 format
- don't lose any features when piping as NarrowPeak format
- load parquet to sql, save, re-read from avro
- load partitioned parquet to sql, save, re-read from avro
2020-10-19 19:01:00 WARN  DatasetBoundSliceDataset:190 - Saving directly as Parquet from SQL. Options other than compression codec are ignored.
- transform features to slice genomic dataset
- transform features to coverage genomic dataset
- transform features to fragment genomic dataset
- transform features to read genomic dataset
- transform features to genotype genomic dataset
- transform features to variant genomic dataset
- transform features to variant context genomic dataset
- filter RDD bound features by feature type
- filter dataset bound features by feature type
- filter RDD bound features by feature types
- filter dataset bound features by feature types
- filter RDD bound features by gene
- filter dataset bound features by gene
- filter RDD bound features by genes
- filter dataset bound features by genes
- filter RDD bound features by transcript
- filter dataset bound features by transcript
- filter RDD bound features by transcripts
- filter dataset bound features by transcripts
- filter RDD bound features by exon
- filter dataset bound features by exon
- filter RDD bound features by exons
- filter dataset bound features by exons
- filter RDD bound features by score
- filter dataset bound features by score
- filter RDD bound features by parent
- filter dataset bound features by parent
- filter RDD bound features by parents
- filter dataset bound features by parents
- filter RDD bound features by attribute
- filter dataset bound features by attribute
- transform dataset via java API
AlphabetSuite:
- test size of a case-sensitive alphabet
- test apply of a case-sensitive alphabet
- test reverse complement of a case-sensitive alphabet
- test exact reverse complement of a case-sensitive alphabet
- test size of a case-insensitive alphabet
- test apply of a case-insensitive alphabet
- test reverse complement of a case-insensitive alphabet
- test exact reverse complement of a case-insensitive alphabet
- DNA alphabet
- map unknown bases to N
SortedGenomicDatasetSuite:
- testing that partition and sort provide correct outputs
- testing copartition maintains or adds sort
- testing that we don't drop any data on the right side even though it doesn't map to a partition on the left
- testing that sorted shuffleRegionJoin matches unsorted
- testing that sorted fullOuterShuffleRegionJoin matches unsorted
- testing that sorted rightOuterShuffleRegionJoin matches unsorted
- testing that sorted leftOuterShuffleRegionJoin matches unsorted
- testing that we can persist the sorted knowledge
VariantContextConverterSuite:
- Convert htsjdk site-only SNV to ADAM
- Convert somatic htsjdk site-only SNV to ADAM
- Convert htsjdk site-only CNV to ADAM
- Convert htsjdk SNV w/ genotypes w/ phase information to ADAM
- Convert htsjdk SNV with different variant filters to ADAM
- Convert htsjdk SNV with different genotype filters to ADAM
- Convert ADAM site-only SNV to htsjdk
- Convert ADAM SNV w/ genotypes to htsjdk
- Convert ADAM SNV w/ genotypes but bad SB to htsjdk with strict validation
2020-10-19 19:01:15 WARN  VariantContextConverter:190 - Applying annotation extraction function <function2> to {"variant": {"referenceName": "1", "start": 0, "end": 1, "names": [], "splitFromMultiAllelic": false, "referenceAllele": "A", "alternateAllele": "T", "quality": null, "filtersApplied": null, "filtersPassed": null, "filtersFailed": [], "annotation": null}, "referenceName": null, "start": null, "end": null, "variantCallingAnnotations": {"filtersApplied": null, "filtersPassed": null, "filtersFailed": [], "downsampled": null, "baseQRankSum": null, "fisherStrandBiasPValue": 3.0, "rmsMapQ": 0.0, "mapq0Reads": 5, "mqRankSum": null, "readPositionRankSum": null, "genotypePriors": [], "genotypePosteriors": [], "vqslod": null, "culprit": null, "attributes": {}}, "sampleId": "NA12878", "sampleDescription": null, "processingDescription": null, "alleles": ["REF", "ALT"], "expectedAlleleDosage": null, "referenceReadDepth": null, "alternateReadDepth": null, "readDepth": null, "minReadDepth": null, "genotypeQuality": null, "genotypeLikelihoods": [], "nonReferenceLikelihoods": [], "strandBiasComponents": [0, 2], "splitFromMultiAllelic": false, "phased": false, "phaseSetId": null, "phaseQuality": null} failed with java.lang.IllegalArgumentException: requirement failed: Illegal strand bias components length. Must be empty or 4. In:
- Convert ADAM SNV w/ genotypes but bad SB to htsjdk with lenient validation
{"variant": {"referenceName": "1", "start": 0, "end": 1, "names": [], "splitFromMultiAllelic": false, "referenceAllele": "A", "alternateAllele": "T", "quality": null, "filtersApplied": null, "filtersPassed": null, "filtersFailed": [], "annotation": null}, "referenceName": null, "start": null, "end": null, "variantCallingAnnotations": {"filtersApplied": null, "filtersPassed": null, "filtersFailed": [], "downsampled": null, "baseQRankSum": null, "fisherStrandBiasPValue": 3.0, "rmsMapQ": 0.0, "mapq0Reads": 5, "mqRankSum": null, "readPositionRankSum": null, "genotypePriors": [], "genotypePosteriors": [], "vqslod": null, "culprit": null, "attributes": {}}, "sampleId": "NA12878", "sampleDescription": null, "processingDescription": null, "alleles": ["REF", "ALT"], "expectedAlleleDosage": null, "referenceReadDepth": null, "alternateReadDepth": null, "readDepth": null, "minReadDepth": null, "genotypeQuality": null, "genotypeLikelihoods": [], "nonReferenceLikelihoods": [], "strandBiasComponents": [0, 2], "splitFromMultiAllelic": false, "phased": false, "phaseSetId": null, "phaseQuality": null}.
- Convert htsjdk multi-allelic sites-only SNVs to ADAM
- Convert htsjdk multi-allelic SNVs to ADAM and back to htsjdk
- Convert gVCF reference records to ADAM
- Convert htsjdk variant context with no IDs to ADAM
- Convert htsjdk variant context with one ID to ADAM
- Convert htsjdk variant context with multiple IDs to ADAM
- Convert ADAM variant context with no names to htsjdk
- Convert ADAM variant context with one name to htsjdk
- Convert ADAM variant context with multiple names to htsjdk
- Convert ADAM variant context with null filters applied to htsjdk
- Convert ADAM variant context with no filters applied to htsjdk
- Convert ADAM variant context with passing filters to htsjdk
- Convert ADAM variant context with failing filters to htsjdk
- no phasing set going htsjdk->adam
- phased but no phase set info going htsjdk->adam
- set phase set and extract going htsjdk->adam
- no allelic depth going htsjdk->adam
- set allelic depth going htsjdk->adam
- no gt read depth going htsjdk->adam
- extract gt read depth going htsjdk->adam
- no min gt read depth going htsjdk->adam
- extract min gt read depth going htsjdk->adam
- no genotype quality going htsjdk->adam
- extract genotype quality going htsjdk->adam
- no phred likelihood going htsjdk->adam
- extract phred likelihoods going htsjdk->adam
- no strand bias info going htsjdk->adam
- extract strand bias info going htsjdk->adam
- no filters going htsjdk->adam
- filters passed going htsjdk->adam
- extract single filter going htsjdk->adam
- extract multiple filters going htsjdk->adam
- no fisher strand bias going htsjdk->adam
- extract fisher strand bias going htsjdk->adam
- no rms mapping quality going htsjdk->adam
- extract rms mapping quality going htsjdk->adam
- no mq0 going htsjdk->adam
- extract mq0 going htsjdk->adam
- no gt read depth going adam->htsjdk
- extract gt read depth going adam->htsjdk
- throw iae if missing one component of gt read depth going adam->htsjdk
- no depth going adam->htsjdk
- extract depth going adam->htsjdk
- no min depth going adam->htsjdk
- extract min depth going adam->htsjdk
- no quality going adam->htsjdk
- extract quality going adam->htsjdk
- no genotype likelihoods going adam->htsjdk
- extract genotype likelihoods going adam->htsjdk
- no strand bias going adam->htsjdk
- malformed strand bias going adam->htsjdk
- extract strand bias going adam->htsjdk
- no phasing info going adam->htsjdk
- unphased going adam->htsjdk
- phased but no ps/pq going adam->htsjdk
- phased but no pq going adam->htsjdk
- phased but no ps going adam->htsjdk
- phased going adam->htsjdk
- no filter info going adam->htsjdk
- if filters applied, must set passed/failed going adam->htsjdk
- filters passed going adam->htsjdk
- if filters failed, must set filters failed going adam->htsjdk
- single filter failed going adam->htsjdk
- multiple filters failed going adam->htsjdk
- no fisher strand bias going adam->htsjdk
- extract fisher strand bias going adam->htsjdk
- no rms mapping quality going adam->htsjdk
- extract rms mapping quality going adam->htsjdk
- no mapping quality 0 reads going adam->htsjdk
- extract mapping quality 0 reads going adam->htsjdk
- no names set going htsjdk->adam
- single name set going htsjdk->adam
- multiple names set going htsjdk->adam
- no quality going htsjdk->adam
- quality set going htsjdk->adam
- no filters applied going htsjdk->adam
- filters applied and passed going htsjdk->adam
- single filter applied and failed going htsjdk->adam
- multiple filters applied and failed going htsjdk->adam
- no names set adam->htsjdk
- set a single name adam->htsjdk
- set multiple names adam->htsjdk
- no qual set adam->htsjdk
- qual is set adam->htsjdk
- no filters applied adam->htsjdk
- null filters applied adam->htsjdk
- filters passed adam->htsjdk
- if filter failed, must have filters adam->htsjdk
- single filter failed adam->htsjdk
- multiple filters failed adam->htsjdk
- no ancestral allele set going htsjdk->adam
- ancestral allele set going htsjdk->adam
- no dbsnp membership set going htsjdk->adam
- dbsnp membership set going htsjdk->adam
- no hapmap2 membership set going htsjdk->adam
- hapmap2 membership set going htsjdk->adam
- no hapmap3 membership set going htsjdk->adam
- hapmap3 membership set going htsjdk->adam
- no validated set going htsjdk->adam
- validated set going htsjdk->adam
- no 1000G membership set going htsjdk->adam
- 1000G membership set going htsjdk->adam
- not somatic going htsjdk->adam
- somatic going htsjdk->adam
- no allele count going htsjdk->adam
- single allele count going htsjdk->adam
- multiple allele counts going htsjdk->adam
- no allele frequency going htsjdk->adam
- single allele frequency going htsjdk->adam
- single allele frequency is +Inf going htsjdk->adam
- single allele frequency is -Inf going htsjdk->adam
- multiple allele frequencies going htsjdk->adam
- no CIGAR going htsjdk->adam
- single CIGAR going htsjdk->adam
- multiple CIGARs going htsjdk->adam
- no read depth going htsjdk->adam
- single read depth going htsjdk->adam
- multiple read depths going htsjdk->adam
- no forward read depth going htsjdk->adam
- single forward read depth going htsjdk->adam
- multiple forward read depths going htsjdk->adam
- no reverse read depth going htsjdk->adam
- single reverse read depth going htsjdk->adam
- multiple reverse read depths going htsjdk->adam
- no ancestral allele set adam->htsjdk
- ancestral allele set adam->htsjdk
- no dbsnp membership set adam->htsjdk
- dbsnp membership set adam->htsjdk
- no hapmap2 membership set adam->htsjdk
- hapmap2 membership set adam->htsjdk
- no hapmap3 membership set adam->htsjdk
- hapmap3 membership set adam->htsjdk
- no validated set adam->htsjdk
- validated set adam->htsjdk
- no 1000G membership set adam->htsjdk
- 1000G membership set adam->htsjdk
- no allele count set adam->htsjdk
- allele count set adam->htsjdk
- no allele frequency set adam->htsjdk
- allele frequency set adam->htsjdk
- no cigar set adam->htsjdk
- cigar set adam->htsjdk
- no read depth set adam->htsjdk
- read depth set adam->htsjdk
- read depth without reference read depth
- reference read depth without read depth
- no forward read depth set adam->htsjdk
- forward read depth set adam->htsjdk
- reference forward read depth without forward read depth
- forward read depth without reference forward read depth
- no reverse read depth set adam->htsjdk
- reverse read depth set adam->htsjdk
- reference reverse read depth without reverse read depth
- reverse read depth without reference reverse read depth
- VCF INFO attribute Number=0 Type=Flag adam->htsjdk
- VCF INFO attribute Number=4 Type=Flag adam->htsjdk unsupported, strict !!! IGNORED !!!
- VCF INFO attribute Number=1 Type=Integer adam->htsjdk
- VCF INFO attribute Number=4 Type=Integer adam->htsjdk
- VCF INFO attribute Number=A Type=Integer adam->htsjdk
- VCF INFO attribute Number=R Type=Integer adam->htsjdk
- VCF INFO attribute Number=R Type=String adam->htsjdk
- VCF INFO attribute Number=G Type=String adam->htsjdk not supported
- VCF INFO attribute Number=0 Type=Flag htsjdk->adam
- VCF INFO attribute Number=1 Type=Integer htsjdk->adam
- VCF INFO attribute Number=4 Type=Integer htsjdk->adam
- VCF INFO attribute Number=4 Type=Float htsjdk->adam
- VCF INFO attribute Number=A Type=Integer htsjdk->adam
- VCF INFO attribute Number=R Type=Integer htsjdk->adam
- VCF INFO attribute Number=R Type=String htsjdk->adam
- VCF INFO attribute Number=G Type=String htsjdk->adam not supported
- VCF FORMAT attribute Number=0 Type=Flag adam->htsjdk not supported
- VCF FORMAT attribute Number=1 Type=Integer adam->htsjdk
- VCF FORMAT attribute Number=4 Type=Integer adam->htsjdk
- VCF FORMAT attribute Number=A Type=Integer adam->htsjdk
- VCF FORMAT attribute Number=R Type=Integer adam->htsjdk
- VCF FORMAT attribute Number=R Type=String adam->htsjdk
- VCF FORMAT attribute Number=0 Type=Flag htsjdk->adam is not supported
- VCF FORMAT attribute Number=1 Type=Integer htsjdk->adam
- VCF FORMAT attribute Number=4 Type=Integer htsjdk->adam
- VCF FORMAT attribute Number=4 Type=Float htsjdk->adam
- VCF FORMAT attribute Number=A Type=Integer htsjdk->adam
- VCF FORMAT attribute Number=R Type=Integer htsjdk->adam
- VCF FORMAT attribute Number=R Type=String htsjdk->adam
- VCF FORMAT attribute Number=G Type=String htsjdk->adam
- respect end position for symbolic alts
FastqRecordConverterSuite:
- test read name suffix and index of pair must match
- test parseReadInFastq, read suffix removal
- test parseReadInFastq, read metadata removal
- test parseReadInFastq, read quality shorter than read length, padded with B
- test parseReadInFastq, read quality longer than read length 
- test parseReadInFastq, no read quality
- testing FastqRecordConverter.convertPair with valid input
- testing FastqRecordConverter.convertPair with 7-line invalid input
- testing FastqRecordConverter.convertPair with invalid input: first read length and qual don't match
- testing FastqRecordConverter.convertPair with invalid input: second read length and qual don't match
- testing FastqRecordConverter.convertFragment with valid input
- testing FastqRecordConverter.convertFragment with another valid input having /1, /2 suffixes
- testing FastqRecordConverter.convertFragment with invalid input: different read names
- testing FastqRecordConverter.convertRead with valid input
- testing FastqRecordConverter.convertRead with valid input: setFirstOfPair set to true
- testing FastqRecordConverter.convertRead with valid input: setSecondOfPair set to true
- testing FastqRecordConverter.convertRead with valid input: setFirstOfPair and setSecondOfPair both true
- testing FastqRecordConverter.convertRead with valid input, no qual, strict
- testing FastqRecordConverter.convertRead with valid input, no qual, not strict
AttributeSuite:
- test SAMTagAndValue parsing
- Attributes can be correctly re-encoded as text SAM tags
GFF3HeaderWriterSuite:
- write gff3 header pragma
BinQualitiesSuite:
- make a quality score bin
- can't have a quality score bin with negative score
- can't have a quality score bin with high score below low
- can't have a quality score bin with high score above 255
- can't have a quality score bin with score outside
- make a quality score bin from a string
- quality score bin must have exactly 3 elements
- quality score bin must be integers
- must define at least one bin
- build multiple bins
- rewrite quality scores for a read
- rewriting quality scores fails if bins overlap
- rewriting quality scores fails if base is out of bounds
- skip read if qualities are null
- rewrite a read
IndexedFastaFileSuite:
- correctly generates sequence dictionary from .dict file
- correctly gets sequence
- fails when fai index is not provided
2020-10-19 19:01:15 WARN  IndexedFastaFile:190 - Caught exception java.lang.NullPointerException when loading FASTA sequence dictionary. Using empty dictionary instead.
- passes when dict is not provided and ValidationStringency = LENIENT
SAMRecordConverterSuite:
- testing the fields in an Alignment obtained from a mapped samRecord conversion
- testing the fields in an Alignment obtained from an unmapped samRecord conversion
- '*' quality gets nulled out
- don't keep denormalized fields
ADAMContextSuite:
- ctr is accessible
- load from an empty directory
- sc.loadParquet should not fail on unmapped reads
- sc.loadParquet should not load a file without a type specified
- can read a small .SAM file
- can read a small .SAM file with a bad header with lenient validation
- loading a sam file with a bad header and strict stringency should fail
- can read a small .CRAM file
- can read a small .SAM with all attribute tag types
- can filter a .SAM file based on quality
- Can convert to phred
- Can convert from phred
- Can read a .gtf file
- Can read a .bed file
- Can read a BED 12 file
- Can read a .narrowPeak file
- Can read a .interval_list file
2020-10-19 19:01:19 WARN  VariantContextConverter:190 - Saw invalid info field java.lang.IllegalArgumentException: Multivalued flags are not supported for INFO lines: INFO=<ID=ABADFLAG,Number=.,Type=Flag,Description="A no good, very bad flag.">. Ignoring...
2020-10-19 19:01:19 WARN  VariantContextConverter:190 - Generating field extractor from header line INFO=<ID=ABADFLAG,Number=.,Type=Flag,Description="A no good, very bad flag."> failed: java.lang.IllegalArgumentException: Multivalue flags are not supported for INFO lines: INFO=<ID=ABADFLAG,Number=.,Type=Flag,Description="A no good, very bad flag.">
- can read a small .vcf file with a validation issue
- can read a small .vcf file
2020-10-19 19:01:19 WARN  VCFInputFormat:218 - file:/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/target/2.11.12/test-classes/test.vcf.gz is not splittable, consider using block-compressed gzip (BGZF)
- can read a gzipped .vcf file
- can read a vcf file with an empty alt
- can read a BGZF gzipped .vcf file with .gz file extension
- can read a BGZF gzipped .vcf file with .bgz file extension
- can read a vcf file with a projection
- can read an uncompressed BCFv2.2 file !!! IGNORED !!!
- can read a BGZF compressed BCFv2.2 file !!! IGNORED !!!
- loadIndexedVcf with 1 ReferenceRegion
- loadIndexedVcf with multiple ReferenceRegions
- load block compressed interleaved fastq
- import records from interleaved FASTQ: 1
- import records from interleaved FASTQ: 2
- import records from interleaved FASTQ: 3
- import records from interleaved FASTQ: 4
- import block compressed single fastq
- import records from single ended FASTQ: 1
- import records from single ended FASTQ: 2
- import records from single ended FASTQ: 3
- import records from single ended FASTQ: 4
- filter on load using the filter2 API
- saveAsParquet with file path
- saveAsParquet with file path, block size, page size
- saveAsParquet with save args
- read a HLA fasta from GRCh38
- read a gzipped fasta file
- read a fasta file with comments, gaps, and translation stops
- loadIndexedBam with 1 ReferenceRegion
- loadIndexedBam with multiple ReferenceRegions
- loadIndexedBam with multiple ReferenceRegions and indexed bams
- loadIndexedBam with multiple ReferenceRegions and a directory of indexed bams
- loadIndexedBam should throw exception without an index file
- loadIndexedBam should work with indexed file with index naming format <filename>.bai
- loadIndexedBam glob should throw exception without an index file
- loadBam with a glob
- loadBam with a directory
- load vcf with a glob
- load vcf from a directory
- load gvcf which contains a multi-allelic row from a directory
- load and save gvcf which contains rows without likelihoods
- parse annotations for multi-allelic rows
- load parquet with globs
- bad glob should fail
- empty directory should fail
- can read a SnpEff-annotated .vcf file
- loadAlignments should not fail on single-end and paired-end fastq reads
- load queryname sorted sam as fragments
- load query grouped sam as fragments
- load paired fastq
- load paired fastq without cache
- load paired fastq as fragments
- load paired fastq as fragments without cache
- load HTSJDK sequence dictionary
- load Bedtools .genome file as sequence dictionary
- load Bedtools .genome.txt file as sequence dictionary
- load UCSC Genome Browser chromInfo.txt file as sequence dictionary
- load unrecognized file extension as sequence dictionary fails
- load BED features with Bedtools .genome file as sequence dictionary
- load BED features with Bedtools .genome file as sequence dictionary, no matching features
- convert program record
- load program record from sam file
- load alignments from data frame
- load features from data frame
- load fragments from data frame
- load genotypes from data frame with default header lines
- load genotypes from data frame with empty header lines
- load reads from data frame
- load sequences from data frame
- load slices from data frame
- load variant contexts from data frame with default header lines
- load variant contexts from data frame with empty header lines
- load variants from data frame with default header lines
- load variants from data frame with empty header lines
- load alignments with metadata from data frame
- load features with metadata from data frame
- load fragments with metadata from data frame
- load genotypes with metadata from data frame
- load variant contexts with metadata from data frame
- load variants with metadata from data frame
- read a fasta file with short sequences as sequences
- read a fasta file with long sequences as sequences
- read a fasta file with short sequences as slices
- read a fasta file with long sequences as slices
CycleCovariateSuite:
- compute covariates for an unpaired read on the negative strand
- compute covariates for a first-of-pair read on the negative strand
- compute covariates for a second-of-pair read on the negative strand
- compute covariates for an unpaired read on the positive strand
- compute covariates for a first-of-pair read on the positive strand
- compute covariates for a second-of-pair read on the positive strand
AlignmentConverterSuite:
- testing the fields in a converted ADAM Read
- converting a read with null quality is OK
- convert a read to fastq
- reverse complement reads when converting to fastq
- converting to fastq with unmapped reads where  read reverse complemented flag (Ox10) was NOT set
- converting to fastq with unmapped reads where reverse complemented flag (0x10) was set
- converting a fragment with no alignments should yield unaligned reads
- converting a fragment with alignments should restore the alignments
- read negative strand is propagated even when not mapped
ConsensusGeneratorFromKnownsSuite:
- no consensuses for empty target
- no consensuses for reads that don't overlap a target
- return a consensus for read overlapping a single target
RichCigarSuite:
- moving 2 bp from a deletion to a match operator
- moving 2 bp from a insertion to a match operator
- moving 1 base in a two element cigar
- move to start of read
- process right clipped cigar
- process left clipped cigar
- process cigar clipped on both ends
MDTaggingSuite:
- test adding MDTags over boundary
- test adding MDTags; reads span full contig
- test adding MDTags; reads start inside first fragment
- test adding MDTags; reads end inside last fragment
- test adding MDTags; reads start inside first fragment and end inside last fragment
- test adding MDTags; reads start and end in middle fragements
2020-10-19 19:02:01 WARN  BlockManager:66 - Putting block rdd_5_3 failed due to exception java.lang.Exception: Contig chr2 not found in reference map with keys: chr1.
2020-10-19 19:02:01 WARN  BlockManager:66 - Block rdd_5_3 could not be removed as it was not found on disk or in memory
2020-10-19 19:02:01 ERROR Executor:91 - Exception in task 3.0 in stage 2.0 (TID 11)
java.lang.Exception: Contig chr2 not found in reference map with keys: chr1
	at org.bdgenomics.adam.util.ReferenceContigMap$$anonfun$extract$1.apply(ReferenceContigMap.scala:63)
	at org.bdgenomics.adam.util.ReferenceContigMap$$anonfun$extract$1.apply(ReferenceContigMap.scala:63)
	at scala.collection.MapLike$class.getOrElse(MapLike.scala:128)
	at scala.collection.AbstractMap.getOrElse(Map.scala:59)
	at org.bdgenomics.adam.util.ReferenceContigMap.extract(ReferenceContigMap.scala:61)
	at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1$$anonfun$apply$2.apply(MDTagging.scala:76)
	at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1$$anonfun$apply$2.apply(MDTagging.scala:71)
	at scala.Option$WithFilter.map(Option.scala:207)
	at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1.apply(MDTagging.scala:71)
	at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1.apply(MDTagging.scala:69)
	at scala.collection.Iterator$$anon$11.next(Iterator.scala:410)
	at org.apache.spark.storage.memory.MemoryStore.putIterator(MemoryStore.scala:222)
	at org.apache.spark.storage.memory.MemoryStore.putIteratorAsValues(MemoryStore.scala:299)
	at org.apache.spark.storage.BlockManager$$anonfun$doPutIterator$1.apply(BlockManager.scala:1165)
	at org.apache.spark.storage.BlockManager$$anonfun$doPutIterator$1.apply(BlockManager.scala:1156)
	at org.apache.spark.storage.BlockManager.doPut(BlockManager.scala:1091)
	at org.apache.spark.storage.BlockManager.doPutIterator(BlockManager.scala:1156)
	at org.apache.spark.storage.BlockManager.getOrElseUpdate(BlockManager.scala:882)
	at org.apache.spark.rdd.RDD.getOrCompute(RDD.scala:357)
	at org.apache.spark.rdd.RDD.iterator(RDD.scala:308)
	at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90)
	at org.apache.spark.scheduler.Task.run(Task.scala:123)
	at org.apache.spark.executor.Executor$TaskRunner$$anonfun$10.apply(Executor.scala:408)
	at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1360)
	at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:414)
	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
	at java.lang.Thread.run(Thread.java:748)
2020-10-19 19:02:01 WARN  TaskSetManager:66 - Lost task 3.0 in stage 2.0 (TID 11, localhost, executor driver): java.lang.Exception: Contig chr2 not found in reference map with keys: chr1
	at org.bdgenomics.adam.util.ReferenceContigMap$$anonfun$extract$1.apply(ReferenceContigMap.scala:63)
	at org.bdgenomics.adam.util.ReferenceContigMap$$anonfun$extract$1.apply(ReferenceContigMap.scala:63)
	at scala.collection.MapLike$class.getOrElse(MapLike.scala:128)
	at scala.collection.AbstractMap.getOrElse(Map.scala:59)
	at org.bdgenomics.adam.util.ReferenceContigMap.extract(ReferenceContigMap.scala:61)
	at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1$$anonfun$apply$2.apply(MDTagging.scala:76)
	at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1$$anonfun$apply$2.apply(MDTagging.scala:71)
	at scala.Option$WithFilter.map(Option.scala:207)
	at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1.apply(MDTagging.scala:71)
	at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1.apply(MDTagging.scala:69)
	at scala.collection.Iterator$$anon$11.next(Iterator.scala:410)
	at org.apache.spark.storage.memory.MemoryStore.putIterator(MemoryStore.scala:222)
	at org.apache.spark.storage.memory.MemoryStore.putIteratorAsValues(MemoryStore.scala:299)
	at org.apache.spark.storage.BlockManager$$anonfun$doPutIterator$1.apply(BlockManager.scala:1165)
	at org.apache.spark.storage.BlockManager$$anonfun$doPutIterator$1.apply(BlockManager.scala:1156)
	at org.apache.spark.storage.BlockManager.doPut(BlockManager.scala:1091)
	at org.apache.spark.storage.BlockManager.doPutIterator(BlockManager.scala:1156)
	at org.apache.spark.storage.BlockManager.getOrElseUpdate(BlockManager.scala:882)
	at org.apache.spark.rdd.RDD.getOrCompute(RDD.scala:357)
	at org.apache.spark.rdd.RDD.iterator(RDD.scala:308)
	at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90)
	at org.apache.spark.scheduler.Task.run(Task.scala:123)
	at org.apache.spark.executor.Executor$TaskRunner$$anonfun$10.apply(Executor.scala:408)
	at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1360)
	at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:414)
	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
	at java.lang.Thread.run(Thread.java:748)

2020-10-19 19:02:01 ERROR TaskSetManager:70 - Task 3 in stage 2.0 failed 1 times; aborting job
- try realigning a read on a missing contig, stringency == STRICT
2020-10-19 19:02:01 WARN  MDTagging:190 - Caught exception when processing read chr2: java.lang.Exception: Contig chr2 not found in reference map with keys: chr1
- try realigning a read on a missing contig, stringency == LENIENT
FileExtensionsSuite:
- ends in gzip extension
- is a vcf extension
PhredUtilsSuite:
- convert low phred score to log and back
- convert high phred score to log and back
- convert overflowing phred score to log and back and clip
- convert negative zero log probability to phred and clip
- round trip log probabilities
ReadDatasetSuite:
- create a new read genomic dataset
- create a new read genomic dataset with sequence dictionary
- save as parquet
- round trip as parquet
- save as fastq
- save as single file fastq
- filter read genomic dataset by reference region
- broadcast region join reads and features
- shuffle region join reads and features
- convert reads to alignments
- convert reads to sequences
- convert reads to slices
AlignmentDatasetSuite:
- sorting reads
- unmapped reads go at the end when sorting
- coverage does not fail on unmapped reads
- computes coverage
- computes coverage with multiple samples
- merges adjacent records with equal coverage values
- sorting reads by reference index
- round trip from ADAM to SAM and back to ADAM produces equivalent Read values
- round trip with single CRAM file produces equivalent Read values
- round trip with sharded CRAM file produces equivalent Read values
- SAM conversion sets read mapped flag properly
- load long FASTQ reads
- load FASTQ with no bases
- convert malformed FASTQ (no quality scores) => SAM => well-formed FASTQ => SAM
- round trip from ADAM to FASTQ and back to ADAM produces equivalent Read values
- round trip from ADAM to paired-FASTQ and back to ADAM produces equivalent Read values
- writing a small file with tags should produce the expected result
- writing a small sorted file as SAM should produce the expected result
- writing unordered sam from unordered sam
- writing ordered sam from unordered sam
- write single sam file back
- write single bam file back
- saveAsParquet with save args, sequence dictionary, and read group dictionary
- load parquet to sql, save, re-read from avro
- load from sam, save as partitioned parquet, and re-read from partitioned parquet
- save as SAM format
- save as sorted SAM format
- save as BAM format
- save as sorted BAM format
- save as FASTQ format
- save as ADAM parquet format
- saveAsSam SAM format
- saveAsSam SAM format single file
- saveAsSam sorted SAM format single file
- saveAsSam BAM format
- saveAsSam BAM format single file
- saveAsSam sorted BAM format single file
- saveAsFastq
- saveAsFastq as single file
- saveAsFastq with original base qualities
- saveAsFastq sorted by read name
- saveAsFastq sorted by read name with original base qualities
2020-10-19 19:02:25 WARN  RDDBoundAlignmentDataset:190 - Found 20 read names that don't occur exactly twice:
	1x:	20

Samples:
	simread:1:237728409:true
	simread:1:195211965:false
	simread:1:163841413:false
	simread:1:231911906:false
	simread:1:26472783:false
	simread:1:165341382:true
	simread:1:240344442:true
	simread:1:50683371:false
	simread:1:240997787:true
	simread:1:14397233:false
	simread:1:207027738:true
	simread:1:20101800:true
	simread:1:101556378:false
	simread:1:37577445:false
	simread:1:189606653:true
	simread:1:5469106:true
	simread:1:186794283:true
	simread:1:89554252:false
	simread:1:153978724:false
	simread:1:169801933:true
- saveAsFastq paired FASTQ
2020-10-19 19:02:26 WARN  RDDBoundAlignmentDataset:190 - Found 20 read names that don't occur exactly twice:
	1x:	20

Samples:
	simread:1:237728409:true
	simread:1:195211965:false
	simread:1:163841413:false
	simread:1:231911906:false
	simread:1:26472783:false
	simread:1:165341382:true
	simread:1:240344442:true
	simread:1:50683371:false
	simread:1:240997787:true
	simread:1:14397233:false
	simread:1:207027738:true
	simread:1:20101800:true
	simread:1:101556378:false
	simread:1:37577445:false
	simread:1:189606653:true
	simread:1:5469106:true
	simread:1:186794283:true
	simread:1:89554252:false
	simread:1:153978724:false
	simread:1:169801933:true
- saveAsPairedFastq
2020-10-19 19:02:27 WARN  RDDBoundAlignmentDataset:190 - Found 20 read names that don't occur exactly twice:
	1x:	20

Samples:
	simread:1:237728409:true
	simread:1:195211965:false
	simread:1:163841413:false
	simread:1:231911906:false
	simread:1:26472783:false
	simread:1:165341382:true
	simread:1:240344442:true
	simread:1:50683371:false
	simread:1:240997787:true
	simread:1:14397233:false
	simread:1:207027738:true
	simread:1:20101800:true
	simread:1:101556378:false
	simread:1:37577445:false
	simread:1:189606653:true
	simread:1:5469106:true
	simread:1:186794283:true
	simread:1:89554252:false
	simread:1:153978724:false
	simread:1:169801933:true
- saveAsPairedFastq as single files
- don't lose any reads when piping as SAM
2020-10-19 19:02:38 WARN  OutFormatterRunner:190 - Piped command List(sleep, 10) timed out after 5 seconds.
2020-10-19 19:02:38 WARN  OutFormatterRunner:190 - Piped command List(sleep, 10) timed out after 5 seconds.
- lose all records when a command times out
- lose no records without a timeout
2020-10-19 19:02:58 WARN  OutFormatterRunner:190 - Piped command List(python, /tmp/adamTestMvnp6vi9tr/spark-848a020c-6361-4f99-8524-a46e0b0f14bb/userFiles-4a723405-7c52-40c4-8527-268bbd337f45/timeout.py) timed out after 5 seconds.
2020-10-19 19:02:58 WARN  OutFormatterRunner:190 - Piped command List(python, /tmp/adamTestMvnp6vi9tr/spark-848a020c-6361-4f99-8524-a46e0b0f14bb/userFiles-4a723405-7c52-40c4-8527-268bbd337f45/timeout.py) timed out after 5 seconds.
- lose some records when a command times out
- don't lose any reads when piping as SAM using java pipe
- don't lose any reads when piping as BAM
- don't lose any reads when piping fastq to sam
- can properly set environment variables inside of a pipe
- read vcf from alignment pipe !!! IGNORED !!!
- use broadcast join to pull down reads mapped to targets
- use broadcast join against to pull down reads mapped to targets
- use right outer broadcast join to pull down reads mapped to targets
- use right outer broadcast join against to pull down reads mapped to targets
- use shuffle join with feature spanning partitions
- use shuffle join to pull down reads mapped to targets
- use shuffle join with flankSize to pull down reads mapped close to targets
- use right outer shuffle join to pull down reads mapped to targets
- use left outer shuffle join to pull down reads mapped to targets
- use full outer shuffle join to pull down reads mapped to targets
- use shuffle join with group by to pull down reads mapped to targets
- use right outer shuffle join with group by to pull down reads mapped to targets
- cannot provide empty quality score bins
- cannot provide bins with a gap
- cannot provide overlapping bins
- binning quality scores in reads succeeds even if reads have no quality scores
- bin quality scores in reads
- union two read files together
- test k-mer counter
- test dataset based k-mer counter
- transform reads to slice genomic dataset
- transform reads to coverage genomic dataset
- transform reads to feature genomic dataset
- transform reads to fragment genomic dataset
- transform reads to genotype genomic dataset
loading /tmp/adamTestMvnp6vi9tr/TempSuite4499857448659752310.adam as parquet into RDD...
loading /tmp/adamTestMvnp6vi9tr/TempSuite1875809907862982615.adam as parquet into RDD...
- transform reads to variant genomic dataset
- cannot have a null processing step ID
- convert a processing description to htsjdk
- GenomicDataset.sort does not fail on unmapped reads
- GenomicDataset.sortLexicographically does not fail on unmapped reads
- left normalize indels
- running base recalibration with downsampling doesn't drop reads
- filter RDD bound alignments by MAPQ
- filter dataset bound alignments by MAPQ
- filter RDD bound unaligned alignments
- filter dataset bound unaligned alignments
- filter RDD bound unpaired alignments
- filter dataset bound unpaired alignments
- filter RDD bound duplicate alignments
- filter dataset bound duplicate alignments
- filter RDD bound alignments to primary alignments
- filter dataset bound alignments to primary alignments
- filter RDD bound alignments to read group
- filter dataset bound alignments to read group
- filter RDD bound alignments to read groups
- filter dataset bound alignments to read groups
- filter RDD bound alignments to sample
- filter dataset bound alignments to sample
- filter RDD bound alignments to samples
- filter dataset bound alignments to samples
- sort by read name
- transform dataset via java API
- convert alignments to reads
SmithWatermanSuite:
- gather max position from simple scoring matrix
- gather max position from irregular scoring matrix
- gather max position from irregular scoring matrix with deletions
- score simple alignment with constant gap
- score irregular scoring matrix
- score irregular scoring matrix with indel
- can unroll cigars correctly
- execute simple trackback
- execute trackback with indel
- run end to end smith waterman for simple reads
- run end to end smith waterman for short sequences with indel
- run end to end smith waterman for longer sequences with snp
- run end to end smith waterman for longer sequences with short indel
- run end to end smith waterman for shorter sequence in longer sequence
- run end to end smith waterman for shorter sequence in longer sequence, with indel
- smithWaterman - simple alignment
MdTagSuite:
- null md tag
- zero length md tag
- md tag with non-digit initial value
- md tag invalid base
- md tag, pure insertion
- md tag, pure insertion, test 2
- md tag pure insertion equality
- md tag equality and hashcode
- valid md tags
- get start of read with no mismatches or deletions
- get start of read with no mismatches, but with a deletion at the start
- get start of read with mismatches at the start
- get end of read with no mismatches or deletions
- check that mdtag and rich record return same end
- get end of read with no mismatches, but a deletion at end
- CIGAR with N operator
- CIGAR with multiple N operators
- CIGAR with P operators
- Get correct matches for mdtag with insertion
- Get correct matches for mdtag with mismatches and insertion
- Get correct matches for mdtag with insertion between mismatches
- Get correct matches for mdtag with intron between mismatches
- Get correct matches for mdtag with intron and deletion between mismatches
- Throw exception when number of deleted bases in mdtag disagrees with CIGAR
- Get correct matches for mdtag with mismatch, insertion and deletion
- Get correct matches for mdtag with mismatches, insertion and deletion
- Get correct matches for MDTag with mismatches and deletions
- Get correct matches base from MDTag and CIGAR with N
- get end of read with mismatches and a deletion at end
- get correct string out of mdtag with no mismatches
- get correct string out of mdtag with mismatches at start
- get correct string out of mdtag with deletion at end
- get correct string out of mdtag with mismatches at end
- get correct string out of complex mdtag
- check complex mdtag
- get gapped reference
- move a cigar alignment by two for a read
- rewrite alignment to all matches
- rewrite alignment to two mismatches followed by all matches
- rewrite alignment to include a deletion but otherwise all matches
- rewrite alignment to include an insertion at the start of the read but otherwise all matches
- create new md tag from read vs. reference, perfect match
- create new md tag from read vs. reference, perfect alignment match, 1 mismatch
- create new md tag from read vs. reference, alignment with deletion
- create new md tag from read vs. reference, alignment with insert
- handle '=' and 'X' operators
- CIGAR/MD tag mismatch should cause errors
GenomicDatasetSuite:
- processing a command that is the spark root directory should return an absolute path
- processing a command that is just a single word should do nothing
- processing a command should handle arguments that include spaces
- processing a command that is a single substitution should succeed
- processing a command that is multiple words should split the string
- process a command that is multiple words with a replacement
- process a command that is multiple words with multiple replacements
ParallelFileMergerSuite:
- cannot write both empty gzip block and cram eof
- buffer size must be non-negative
- get the size of several files
- block size must be positive and non-zero when trying to merge files
- must provide files to merge
- if two files are both below the block size, they should merge into one shard
- merge two files where one is greater than the block size
- merge a sharded sam file
- merge a sharded bam file
- merge a sharded cram file
- can't turn a negative index into a path
- generate a path from an index
IndelTableSuite:
- check for indels in a region with known indels
- check for indels in a contig that doesn't exist
- check for indels in a region without known indels
- build indel table from rdd of variants
SnpTableSuite:
- create an empty snp table
- create a snp table from variants on multiple contigs
- create a snp table from a larger set of variants
- perform lookups on multi-contig snp table
- perform lookups on larger snp table
RealignIndelsSuite:
- map reads to targets
- checking mapping to targets for artificial reads
- checking alternative consensus for artificial reads
- checking extraction of reference from reads
- checking realigned reads for artificial input
- checking realigned reads for artificial input with reference file
- checking realigned reads for artificial input using knowns
- checking realigned reads for artificial input using knowns and reads
- skip realigning reads if target is highly covered
- skip realignment if target is an insufficient LOD improvement
- realign reads to an insertion
- test mismatch quality scoring
- test mismatch quality scoring for no mismatches
- test mismatch quality scoring for offset
- test mismatch quality scoring with early exit
- test mismatch quality scoring after unpacking read
- we shouldn't try to realign a region with no target
- we shouldn't try to realign reads with no indel evidence
- test OP and OC tags
- realign a read with an insertion that goes off the end of the read
- if realigning a target doesn't improve the LOD, don't drop reads
- extract seq/qual from a read with no clipped bases
- extract seq/qual from a read with clipped bases at start
- extract seq/qual from a read with clipped bases at end
- if unclip is selected, don't drop base when extracting from a read with clipped bases
- get cigar and coordinates for read that spans indel, no clipped bases
- get cigar and coordinates for read that spans deletion, clipped bases at start
- get cigar and coordinates for read that falls wholly before insertion
- get cigar and coordinates for read that falls wholly after insertion
- get cigar and coordinates for read that falls wholly after deletion
- get cigar and coordinates for read that partially spans insertion, no clipped bases
- get cigar and coordinates for read that partially spans insertion, clipped bases at end
- get cigar and coordinates for read that partially spans insertion, clipped bases both ends
BaseQualityRecalibrationSuite:
- BQSR Test Input #1 w/ VCF Sites without caching
- BQSR Test Input #1 w/ VCF Sites with caching
- BQSR Test Input #1 w/ VCF Sites with serialized caching
DinucCovariateSuite:
- computing dinucleotide pairs for a single base sequence should return (N,N)
- compute dinucleotide pairs for a string of all valid bases
- compute dinucleotide pairs for a string with an N
- compute covariates for a read on the negative strand
- compute covariates for a read on the positive strand
SequenceDictionarySuite:
- Convert from sam sequence record and back
- Convert from SAM sequence dictionary file (with extra fields)
- merge into existing dictionary
- Convert from SAM sequence dictionary and back
- Can retrieve sequence by name
- SequenceDictionary's with same single element are equal
- SequenceDictionary's with same two elements are equals
- SequenceDictionary's with different elements are unequal
- SequenceDictionaries with same elements in different order are compatible
- isCompatible tests equality on overlap
- The addition + works correctly
- The append operation ++ works correctly
- ContainsRefName works correctly for different string types
- Apply on name works correctly for different String types
- convert from sam sequence record and back
- convert from sam sequence dictionary and back
- conversion to sam sequence dictionary has correct sort order
- load sequence dictionary from VCF file
- empty sequence dictionary must be empty
- test filter to reference name
- test filter to reference names
- test filter to reference name by function
GenomicPositionPartitionerSuite:
- partitions the UNMAPPED ReferencePosition into the top partition
- if we do not have a contig for a record, we throw an IAE
- partitioning into N pieces on M total sequence length, where N > M, results in M partitions
- correctly partitions a single dummy sequence into two pieces
- correctly counts cumulative lengths
- correctly partitions positions across two dummy sequences
- test that we can range partition ADAMRecords
- test that we can range partition ADAMRecords indexed by sample
- test that simple partitioning works okay on a reasonable set of ADAMRecords
- test indexed ReferencePosition partitioning works on a set of indexed ADAMRecords
CoverageSuite:
- Convert to coverage from valid Feature
- Convert to coverage from valid Feature with sampleId
- Convert to coverage from Feature with null/empty contigName fails with correct error
- Convert to coverage from Feature with no start/end position fails with correct error
- Convert to coverage from Feature with no score fails with correct error
InnerTreeRegionJoinSuite:
- Ensure same reference regions get passed together
- Overlapping reference regions
- Multiple reference regions do not throw exception
VariantDatasetSuite:
- union two variant genomic datasets together
- round trip to parquet
- save and reload from partitioned parquet
- use broadcast join to pull down variants mapped to targets
- use right outer broadcast join to pull down variants mapped to targets
- use shuffle join to pull down variants mapped to targets
- use right outer shuffle join to pull down variants mapped to targets
- use left outer shuffle join to pull down variants mapped to targets
- use full outer shuffle join to pull down variants mapped to targets
- use shuffle join with group by to pull down variants mapped to targets
- use right outer shuffle join with group by to pull down variants mapped to targets
- convert back to variant contexts
- load parquet to sql, save, re-read from avro
2020-10-19 19:04:30 WARN  DatasetBoundSliceDataset:190 - Saving directly as Parquet from SQL. Options other than compression codec are ignored.
- transform variants to slice genomic dataset
- transform variants to coverage genomic dataset
- transform variants to feature genomic dataset
- transform variants to fragment genomic dataset
- transform variants to read genomic dataset
- transform variants to genotype genomic dataset
- transform variants to variant context genomic dataset
- filter RDD bound variants to filters passed
- filter dataset bound variants to filters passed
- filter RDD bound variants by quality
- filter dataset bound variants by quality
- filter RDD bound variants by read depth
- filter dataset bound variants by read depth
- filter RDD bound variants by reference read depth
- filter dataset bound variants by reference read depth
- filter RDD bound single nucleotide variants
- filter dataset bound single nucleotide variants
- filter RDD bound multiple nucleotide variants
- filter dataset bound multiple nucleotide variants
- filter RDD bound indel variants
- filter dataset bound indel variants
- filter RDD bound variants to single nucleotide variants
- filter dataset bound variants to single nucleotide variants
- filter RDD bound variants to multiple nucleotide variants
- filter dataset bound variants to multiple nucleotide variants
- filter RDD bound variants to indel variants
- filter dataset bound variants to indel variants
- transform dataset via java API
Run completed in 6 minutes, 23 seconds.
Total number of tests run: 1175
Suites: completed 68, aborted 0
Tests: succeeded 1175, failed 0, canceled 0, ignored 5, pending 0
All tests passed.
[INFO] 
[INFO] >>> scoverage-maven-plugin:1.1.1:report (default-cli) > [scoverage]test @ adam-core-spark2_2.11 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-core-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-core-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-core-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/main/scala added.
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/target/generated-sources/src/main/scala added.
[INFO] 
[INFO] --- exec-maven-plugin:1.5.0:java (generate-scala-products) @ adam-core-spark2_2.11 ---
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] 
[INFO] --- exec-maven-plugin:1.5.0:java (generate-scala-projection-fields) @ adam-core-spark2_2.11 ---
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-core-spark2_2.11 ---
[INFO] Modified 2 of 204 .scala files
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:pre-compile (default-cli) @ adam-core-spark2_2.11 ---
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-core-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-core-spark2_2.11 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/main/java:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/main/scala:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/target/generated-sources/src/main/scala:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/target/generated-sources/annotations:-1: info: compiling
[INFO] Compiling 140 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/target/2.11.12/scoverage-classes at 1603159491184
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicDataset.scala:3091: warning: no valid targets for annotation on value uTag - it is discarded unused. You may specify targets with meta-annotations, e.g. @(transient @getter)
[WARNING]   @transient val uTag: TypeTag[U]
[WARNING]    ^
[INFO] [info] Cleaning datadir [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/target/scoverage-data]
[INFO] [info] Beginning coverage instrumentation
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[INFO] [info] Instrumentation completed [17001 statements]
[INFO] [info] Wrote instrumentation file [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/target/scoverage-data/scoverage.coverage.xml]
[INFO] [info] Will write measurement data to [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/target/scoverage-data]
[WARNING] warning: there were 53 deprecation warnings; re-run with -deprecation for details
[WARNING] warning: there were 5 feature warnings; re-run with -feature for details
[WARNING] three warnings found
[INFO] prepare-compile in 0 s
[INFO] compile in 35 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-core-spark2_2.11 ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 6 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/target/2.11.12/scoverage-classes
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:post-compile (default-cli) @ adam-core-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-core-spark2_2.11 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-core-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 152 resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-core-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-core-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-core-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-core-spark2_2.11 ---
Discovery starting.
Discovery completed in 2 seconds, 379 milliseconds.
Run starting. Expected test count is: 1175
RepairPartitionsSuite:
- don't pull from the first partition
- properly handle pulling from an empty iterator
- gets a single read from the partition if there are no other reads in the pair
- gets all the reads from a pair from the start of a partition
- properly handle dropping from an empty iterator
- don't drop from the first partition
- drop a single read from the partition if there are no other reads in the pair
- drops all the reads from a pair from the start of a partition
- only append to the first partition
- drop a single read from the partition and append read when in the middle
- drop reads from the start and don't append when in the last partition
- can't have more records than number of partitions
- unroll array for broadcast
2020-10-19 19:05:30 WARN  Utils:66 - Your hostname, amp-jenkins-staging-worker-02 resolves to a loopback address: 127.0.1.1; using 192.168.10.32 instead (on interface eno1)
2020-10-19 19:05:30 WARN  Utils:66 - Set SPARK_LOCAL_IP if you need to bind to another address
2020-10-19 19:05:30 WARN  NativeCodeLoader:62 - Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
- move pairs around an rdd
FlagStatSuite:
- Standard FlagStat test
ModPartitionerSuite:
- report number of partitions correctly
- partition a number that is lower than the number of partitions and positive
- partition a number that is greater than the number of partitions and positive
- partition a number that is lower than the number of partitions and negative
- partition a number that is greater than the number of partitions and negative
- fire an exception if input is not an integer
TwoBitFileSuite:
- correctly read sequence from .2bit file
- correctly return masked sequences from .2bit file
- correctly return Ns from .2bit file
- correctly calculates sequence dictionary
NonoverlappingRegionsSuite:
- alternating returns an alternating seq of items
- Single region returns itself
- Two adjacent regions will be merged
- Nonoverlapping regions will all be returned
- Many overlapping regions will all be merged
- ADAMRecords return proper references
ReferencePositionSuite:
- create reference position from mapped read
- create reference position from variant
- create reference position from genotype
- create reference position from variant starting at vcf 0
- create reference position from genotype starting at vcf 0
ConsensusGeneratorFromReadsSuite:
- checking search for consensus list for artificial reads
FragmentConverterSuite:
- build a fragment collector and convert to a read
- if a fragment isn't associated with a contig, don't get a fragment collector
- convert an rdd of discontinuous fragments, all from the same contig
- convert an rdd of contiguous fragments, all from the same contig
- convert an rdd of varied fragments from multiple contigs
FileMergerSuite:
- cannot write both empty gzip block and cram eof
- buffer size must be non-negative
RichAlignmentSuite:
- Unclipped Start
- Unclipped End
- tags contains optional fields
- read overlap unmapped read
- read overlap reference position
- read overlap same position different contig
SingleReadBucketSuite:
- convert unmapped pair to fragment
- convert proper pair to fragment
- convert read pair to fragment with first of pair chimeric read
RecalibrationTableSuite:
- look up quality scores in table
FlankSlicesSuite:
- don't put flanks on non-adjacent slices
- put flanks on adjacent slices
InterleavedFastqInputFormatSuite:
- interleaved FASTQ hadoop reader: interleaved_fastq_sample1.ifq->interleaved_fastq_sample1.ifq.output
- interleaved FASTQ hadoop reader: interleaved_fastq_sample2.ifq->interleaved_fastq_sample2.ifq.output
- interleaved FASTQ hadoop reader: interleaved_fastq_sample3.ifq->interleaved_fastq_sample3.ifq.output
- interleaved FASTQ hadoop reader: interleaved_fastq_sample4.ifq->interleaved_fastq_sample4.ifq.output
- interleaved FASTQ hadoop reader: interleaved_fastq_sample5.ifq->interleaved_fastq_sample5.ifq.output
TreeRegionJoinSuite:
- run a join between data on a single contig
ReferenceRegionSuite:
- cannot create an empty predicate
- parse empty string throws IllegalArgumentException
- parse contigName only string into reference regions
- parse to end strings into reference regions
- parse string into reference regions
- contains(: ReferenceRegion)
- contains(: ReferencePosition)
- merge
- overlaps and covers
- overlapsBy and coversBy
- distance(: ReferenceRegion)
- distance(: ReferencePosition)
- unstrandedDistance
- subtract fails on non-overlapping and non-covering regions
- subtract
- create region from unmapped read fails
- create region from read with null alignment positions fails
- create stranded region from unmapped read fails
- create stranded region from read with null alignment positions fails
- create stranded region from read with null alignment strand fails
- create stranded region from read on forward strand
- create stranded region from read on reverse strand
- create region from mapped read contains read start and end
- validate that adjacent regions can be merged
- validate that non-adjacent regions cannot be merged
- validate that nearby regions can be merged
- validate that non-nearby regions cannot be merged
- compute convex hull of two sets
- region name is sanitized when creating region from read
- intersection fails on non-overlapping regions
- intersection fails when minOverlap is not met
- compute intersection
- overlap tests for oriented reference region
- check the width of a reference region
- make a reference region for a variant or genotype
- make a reference region for a variant or genotype starting at VCF 0
- uniformly pad a reference region
- uniformly pad a reference region into negative coordinate space, ensure non negative start
- unevenly pad a reference region
- unevenly pad a reference region into negative coordinate space, ensure non negative start
- can build an open ended reference region
- can build an open ended reference region with strand
- can build a reference region with an open start position
- can build a reference region with an open start position with strand
- can build a reference region that covers the entirety of a contig
- can build a reference region that covers the entirety of a contig with strand
- convert a genotype and then get the reference region
- create region from feature with null alignment positions fails
- create stranded region from feature with null alignment positions fails
- create stranded region from feature with null alignment strand fails
- create stranded region from feature on forward strand
- create stranded region from feature on reverse strand
CoverageDatasetSuite:
- correctly saves coverage
- can read a bed file to coverage
- correctly filters coverage with predicate
- keeps sample metadata
- can read a bed file with multiple samples to coverage
- correctly flatmaps coverage without aggregated bins
- correctly flatmaps coverage with aggregated bins
- collapses coverage records in one partition
- approximately collapses coverage records in multiple partitions
2020-10-19 19:05:49 WARN  DatasetBoundSliceDataset:190 - Saving directly as Parquet from SQL. Options other than compression codec are ignored.
- transform coverage to slice genomic dataset
- transform coverage to feature genomic dataset
2020-10-19 19:05:51 WARN  Utils:66 - Truncated the string representation of a plan since it was too large. This behavior can be adjusted by setting 'spark.debug.maxToStringFields' in SparkEnv.conf.
- transform coverage to fragment genomic dataset
- transform coverage to read genomic dataset
- transform coverage to genotype genomic dataset
- transform coverage to variant genomic dataset
- transform coverage to variant context genomic dataset
- copy coverage rdd
- copy coverage dataset
- copy coverage rdd without sequence dictionary
- copy coverage dataset without sequence dictionary
- transform dataset via java API
RecalibratorSuite:
- don't replace quality if quality was null
- if no covariates, return alignment
- skip recalibration if base is below quality threshold
- recalibrate changed bases above quality threshold
SliceDatasetSuite:
- create a new slice genomic dataset
- create a new slice genomic dataset with sequence dictionary
- merge slices into a sequence genomic dataset
- save as parquet
- round trip as parquet
- save as fasta
- save as single file fasta
- convert slices to reads
- convert slices to sequences
GenotypeDatasetSuite:
- union two genotype genomic datasets together
- round trip to parquet
- round trip to partitioned parquet
- use broadcast join to pull down genotypes mapped to targets
- use right outer broadcast join to pull down genotypes mapped to targets
- use shuffle join to pull down genotypes mapped to targets
- use right outer shuffle join to pull down genotypes mapped to targets
- use left outer shuffle join to pull down genotypes mapped to targets
- use full outer shuffle join to pull down genotypes mapped to targets
- use shuffle join with group by to pull down genotypes mapped to targets
- use right outer shuffle join with group by to pull down genotypes mapped to targets
- convert back to variant contexts
- load parquet to sql, save, re-read from avro
2020-10-19 19:06:18 WARN  DatasetBoundSliceDataset:190 - Saving directly as Parquet from SQL. Options other than compression codec are ignored.
- transform genotypes to slice genomic dataset
- transform genotypes to coverage genomic dataset
- transform genotypes to feature genomic dataset
- transform genotypes to fragment genomic dataset
- transform genotypes to read genomic dataset
- transform genotypes to variant genomic dataset
- transform genotypes to variant context genomic dataset
- loading genotypes then converting to variants yields same output as loading variants
- filter RDD bound genotypes to genotype filters passed
- filter dataset bound genotypes to genotype filters passed
- filter RDD bound genotypes by genotype quality
- filter dataset bound genotypes by genotype quality
- filter RDD bound genotypes by read depth
- filter dataset bound genotypes by read depth
- filter RDD bound genotypes by alternate read depth
- filter dataset bound genotypes by alternate read depth
- filter RDD bound genotypes by reference read depth
- filter dataset bound genotypes by reference read depth
- filter RDD bound genotypes by sample
- filter dataset bound genotypes by sample
- filter RDD bound genotypes by samples
- filter dataset bound genotypes by samples
- filter RDD bound no call genotypes
- filter dataset no call genotypes
- round trip gVCF END attribute without nested variant annotations rdd bound
- round trip gVCF END attribute without nested variant annotations dataset bound
- round trip gVCF END attribute with nested variant annotations rdd bound
- round trip gVCF END attribute with nested variant annotations dataset bound
- transform dataset via java API
FragmentDatasetSuite:
- don't lose any reads when piping interleaved fastq to sam
- don't lose any reads when piping tab5 to sam
- don't lose any reads when piping tab6 to sam
- use broadcast join to pull down fragments mapped to targets
- use right outer broadcast join to pull down fragments mapped to targets
- use shuffle join to pull down fragments mapped to targets
- use right outer shuffle join to pull down fragments mapped to targets
- use left outer shuffle join to pull down fragments mapped to targets
- use full outer shuffle join to pull down fragments mapped to targets
- use shuffle join with group by to pull down fragments mapped to targets
- use right outer shuffle join with group by to pull down fragments mapped to targets
- bin quality scores in fragments
- union two genomic datasets of fragments together
- load parquet to sql, save, re-read from avro
- transform fragments to slice genomic dataset
- transform fragments to coverage genomic dataset
- transform fragments to feature genomic dataset
- transform fragments to read genomic dataset
- transform fragments to genotype genomic dataset
- transform fragments to variant genomic dataset
- transform fragments to variant context genomic dataset
- paired read names with index sequences in read names can group into fragments
- interleaved paired read names with index sequences in read names can group into fragments
- interleaved paired read names with index sequences in read names as fragments
- transform dataset via java API
- dataset and rdd conversion to alignments are equivalent
SingleFastqInputFormatSuite:
- FASTQ hadoop reader: fastq_sample1.fq->single_fastq_sample1.fq.output
- FASTQ hadoop reader: fastq_sample2.fq->single_fastq_sample2.fq.output
- FASTQ hadoop reader: fastq_sample3.fq->single_fastq_sample3.fq.output
- FASTQ hadoop reader: fastq_sample4.fq->single_fastq_sample4.fq.output
VariantContextDatasetSuite:
- load a gvcf with a missing info field set to .
- union two variant context genomic datasets together
- can write, then read in .vcf file
- can write as a single file via simple saveAsVcf method, then read in .vcf file
- can write as a single file via full saveAsVcf method, then read in .vcf file
- transform a vcf file with bad header
- read a vcf file with multi-allelic variants to split
- support VCFs with +Inf/-Inf float values
- support VCFs with `nan` instead of `NaN` float values
- don't lose any variants when piping as VCF
- pipe works with empty partitions
- don't lose any non-default VCF header lines or attributes when piping as VCF
- save a file sorted by contig index
- save a lexicographically sorted file
- save a multiallelic gvcf !!! IGNORED !!!
- test metadata
- save sharded bgzip vcf
- save bgzip vcf as single file
- can't save file with non-vcf extension
- transform variant contexts to slice genomic dataset
- transform variant contexts to coverage genomic dataset
- transform variant contexts to feature genomic dataset
- transform variant contexts to fragment genomic dataset
- transform variant contexts to read genomic dataset
- transform variant contexts to genotype genomic dataset
- transform variant contexts to variant genomic dataset
- save and reload from partitioned parquet
- transform dataset via java API
ConsensusSuite:
- test the insertion of a consensus insertion into a reference
- test the insertion of a consensus deletion into a reference
- inserting empty consensus returns the reference
SequenceDatasetSuite:
- create a new sequence genomic dataset
- create a new sequence genomic dataset with sequence dictionary
- save as parquet
- round trip as parquet
- save as fasta
- save as single file fasta
- convert sequences to reads
- convert sequences to slices
- slice sequences to a maximum length
- slice sequences shorter than maximum length
- filter sequences by overlapping region
- filter sequences failing to overlap region
- filter sequences by overlapping regions
- filter sequences failing to overlap regions
- slice sequences overlapping a smaller region
- slice sequences overlapping a larger region
- slice sequences failing to overlap a region
- slice sequences overlapping smaller regions
- slice sequences overlapping larger regions
- slice sequences failing to overlap regions
AttributeUtilsSuite:
- parseTags returns a reasonable set of tagStrings
- parseTags works with NumericSequence tagType
- empty string is parsed as zero tagStrings
- incorrectly formatted tag throws an exception
- string tag with a ':' in it is correctly parsed
- oq string tag with many ':' in it is correctly parsed
- oq string tag with a ',' in it is correctly parsed
- if a tag is an array but doesn't define it's format, throw
MarkDuplicatesSuite:
- single read
- reads at different positions
- reads at the same position
- reads at the same position with clipping
- reads on reverse strand
- unmapped reads
- read pairs
- read pairs with fragments
- quality scores
- read pairs that cross chromosomes
- single fragment
- fragments at different positions
- fragments at the same position
- fragments at the same position with clipping
- fragments on reverse strand
- unmapped fragments
- read pairs as fragments
- read pairs with fragments as fragments
- chimeric fragments
- inverse pairs
- supplemental reads
TranscriptEffectConverterSuite:
- parse empty transcript effect
- parse empty transcript effect strict validation stringency
- parse invalid transcript effect
- parse invalid transcript effect strict validation stringency
- parse transcript effect
- parse empty list VCF ANN attribute
- parse empty list VCF ANN attribute strict validation stringency
- parse empty string VCF ANN attribute
- parse empty string VCF ANN attribute strict validation stringency
- parse invalid VCF ANN attribute
- parse invalid VCF ANN attribute strict validation stringency
- parse VCF ANN attribute with one transcript effect
- parse VCF ANN attribute with multiple transcript effects
- convert to transcript effect from null VCF ANN attribute in variant context
- convert to transcript effect from empty list VCF ANN attribute in variant context
- convert to transcript effect from empty list VCF ANN attribute in variant context strict validation stringency
- convert to transcript effect from empty string VCF ANN attribute in variant context
- convert to transcript effect from empty string VCF ANN attribute in variant context strict validation stringency
- convert to transcript effect from invalid VCF ANN attribute in variant context
- convert to transcript effect from invalid VCF ANN attribute in variant context strict validation stringency
2020-10-19 19:07:37 WARN  TranscriptEffectConverter$:190 - Could not convert VCF INFO reserved key ANN value to TranscriptEffect, caught java.lang.NumberFormatException: For input string: "not a number".
- convert to transcript effect from VCF ANN attribute with invalid number in variant context lenient validation stringency
2020-10-19 19:07:37 WARN  TranscriptEffectConverter$:190 - Could not convert VCF INFO reserved key ANN value to TranscriptEffect, caught java.lang.NumberFormatException: For input string: "not a number".
- convert to transcript effect from VCF ANN attribute with invalid fraction in variant context lenient validation stringency
- convert to transcript effect from VCF ANN attribute with invalid number in variant context strict validation stringency
- convert to transcript effect from VCF ANN attribute with invalid fraction in variant context strict validation stringency
- convert to transcript effect from VCF ANN attribute in variant context different alt allele
- convert to transcript effect from VCF ANN attribute in variant context same alt allele
- convert to transcript effect from VCF ANN attribute in variant context multiple effects same alt allele
- convert transcript effect to VCF ANN attribute value
- convert transcript effect with null fields to VCF ANN attribute value
2020-10-19 19:07:37 WARN  TranscriptEffectConverter$:190 - Incorrect fractional value ?/2, missing numerator
- convert transcript effect with incorrect fractional value to VCF ANN attribute value
IndelRealignmentTargetSuite:
- checking simple realignment target
- creating simple target from read with deletion
- creating simple target from read with insertion
- joining simple realignment targets on same chr
- joining simple realignment targets on different chr throws exception
- creating targets from three intersecting reads, same indel
- creating targets from three intersecting reads, two different indel
- creating targets from two disjoint reads
- creating targets for artificial reads: one-by-one
- creating targets for artificial reads: all-at-once (merged)
- creating indel targets for mason reads
- additional indel targets taken from consensus generator
NormalizationUtilsSuite:
- cannot move an indel left if there are no bases to it's left
- move a simple indel to farthest position left until bases run out
- move a simple indel to farthest position left, past length of indel
- cannot move a left normalized indel in a short tandem repeat
- move an indel in a short tandem repeat
- move an indel in a short tandem repeat of more than 2 bases, where shift is not an integer multiple of repeated sequence length
- moving a simple read with single deletion that cannot shift
- shift an indel left by 0 in a cigar
- shift an indel left by 1 in a cigar
- do not left align a complex read which is already left aligned
ReadGroupDictionarySuite:
- simple conversion to and from sam read group
- sample name must be set
- simple equality checks
- get samples from read group dictionary
- empty read group is empty
- merging a dictionary with itself should work
- round trip a record with all attributes set
RightOuterTreeRegionJoinSuite:
- Ensure same reference regions get passed together
- Overlapping reference regions
InnerShuffleRegionJoinSuite:
- Overlapping reference regions
- Multiple reference regions do not throw exception
FeatureDatasetSuite:
- round trip GTF format
- save GTF as GFF3 format
- save GTF as BED format
- save GTF as IntervalList format
- save GTF as NarrowPeak format
- save GFF3 as GTF format
- save GFF3 as BED format
- save GFF3 as IntervalList format
- save GFF3 as NarrowPeak format
- round trip GFF3 format
- ignore FASTA sequence in GFF3 file
- save BED as GTF format
- save BED as GFF3 format
- save BED as IntervalList format
- save BED as NarrowPeak format
- round trip BED6 format
- keeps sample metadata
- round trip BED12 format
- save to UCSC BED format
- save IntervalList as GTF format
- save IntervalList as GFF3 format
- save IntervalList as BED format
- save IntervalList as IntervalList format
- save IntervalList as NarrowPeak format
- round trip IntervalList format
- save NarrowPeak as GTF format
- save NarrowPeak as GFF3 format
- save NarrowPeak as BED format
- save NarrowPeak as IntervalList format
- save NarrowPeak as NarrowPeak format
- round trip NarrowPeak format
- sort by reference
- sort by reference and feature fields
- sort gene features by reference and gene structure
- sort transcript features by reference and gene structure
- sort exon features by reference and gene structure
- sort intron features by reference and gene structure
- correctly flatmaps CoverageDataset from FeatureDataset
- use broadcast join to pull down features mapped to targets
- use right outer broadcast join to pull down features mapped to targets
- use shuffle join to pull down features mapped to targets
- use right outer shuffle join to pull down features mapped to targets
- use left outer shuffle join to pull down features mapped to targets
- use full outer shuffle join to pull down features mapped to targets
- use shuffle join with group by to pull down features mapped to targets
- use right outer shuffle join with group by to pull down features mapped to targets
- union two feature rdds together
- obtain sequence dictionary contig lengths from header in IntervalList format
- don't lose any features when piping as BED format
- don't lose any features when piping as GTF format
- don't lose any features when piping as GFF3 format
- don't lose any features when piping as NarrowPeak format
- load parquet to sql, save, re-read from avro
- load partitioned parquet to sql, save, re-read from avro
2020-10-19 19:08:10 WARN  DatasetBoundSliceDataset:190 - Saving directly as Parquet from SQL. Options other than compression codec are ignored.
- transform features to slice genomic dataset
- transform features to coverage genomic dataset
- transform features to fragment genomic dataset
- transform features to read genomic dataset
- transform features to genotype genomic dataset
- transform features to variant genomic dataset
- transform features to variant context genomic dataset
- filter RDD bound features by feature type
- filter dataset bound features by feature type
- filter RDD bound features by feature types
- filter dataset bound features by feature types
- filter RDD bound features by gene
- filter dataset bound features by gene
- filter RDD bound features by genes
- filter dataset bound features by genes
- filter RDD bound features by transcript
- filter dataset bound features by transcript
- filter RDD bound features by transcripts
- filter dataset bound features by transcripts
- filter RDD bound features by exon
- filter dataset bound features by exon
- filter RDD bound features by exons
- filter dataset bound features by exons
- filter RDD bound features by score
- filter dataset bound features by score
- filter RDD bound features by parent
- filter dataset bound features by parent
- filter RDD bound features by parents
- filter dataset bound features by parents
- filter RDD bound features by attribute
- filter dataset bound features by attribute
- transform dataset via java API
AlphabetSuite:
- test size of a case-sensitive alphabet
- test apply of a case-sensitive alphabet
- test reverse complement of a case-sensitive alphabet
- test exact reverse complement of a case-sensitive alphabet
- test size of a case-insensitive alphabet
- test apply of a case-insensitive alphabet
- test reverse complement of a case-insensitive alphabet
- test exact reverse complement of a case-insensitive alphabet
- DNA alphabet
- map unknown bases to N
SortedGenomicDatasetSuite:
- testing that partition and sort provide correct outputs
- testing copartition maintains or adds sort
- testing that we don't drop any data on the right side even though it doesn't map to a partition on the left
- testing that sorted shuffleRegionJoin matches unsorted
- testing that sorted fullOuterShuffleRegionJoin matches unsorted
- testing that sorted rightOuterShuffleRegionJoin matches unsorted
- testing that sorted leftOuterShuffleRegionJoin matches unsorted
- testing that we can persist the sorted knowledge
VariantContextConverterSuite:
- Convert htsjdk site-only SNV to ADAM
- Convert somatic htsjdk site-only SNV to ADAM
- Convert htsjdk site-only CNV to ADAM
- Convert htsjdk SNV w/ genotypes w/ phase information to ADAM
- Convert htsjdk SNV with different variant filters to ADAM
- Convert htsjdk SNV with different genotype filters to ADAM
- Convert ADAM site-only SNV to htsjdk
- Convert ADAM SNV w/ genotypes to htsjdk
- Convert ADAM SNV w/ genotypes but bad SB to htsjdk with strict validation
2020-10-19 19:08:26 WARN  VariantContextConverter:190 - Applying annotation extraction function <function2> to {"variant": {"referenceName": "1", "start": 0, "end": 1, "names": [], "splitFromMultiAllelic": false, "referenceAllele": "A", "alternateAllele": "T", "quality": null, "filtersApplied": null, "filtersPassed": null, "filtersFailed": [], "annotation": null}, "referenceName": null, "start": null, "end": null, "variantCallingAnnotations": {"filtersApplied": null, "filtersPassed": null, "filtersFailed": [], "downsampled": null, "baseQRankSum": null, "fisherStrandBiasPValue": 3.0, "rmsMapQ": 0.0, "mapq0Reads": 5, "mqRankSum": null, "readPositionRankSum": null, "genotypePriors": [], "genotypePosteriors": [], "vqslod": null, "culprit": null, "attributes": {}}, "sampleId": "NA12878", "sampleDescription": null, "processingDescription": null, "alleles": ["REF", "ALT"], "expectedAlleleDosage": null, "referenceReadDepth": null, "alternateReadDepth": null, "readDepth": null, "minReadDepth": null, "genotypeQuality": null, "genotypeLikelihoods": [], "nonReferenceLikelihoods": [], "strandBiasComponents": [0, 2], "splitFromMultiAllelic": false, "phased": false, "phaseSetId": null, "phaseQuality": null} failed with java.lang.IllegalArgumentException: requirement failed: Illegal strand bias components length. Must be empty or 4. In:
{"variant": {"referenceName": "1", "start": 0, "end": 1, "names": [], "splitFromMultiAllelic": false, "referenceAllele": "A", "alternateAllele": "T", "quality": null, "filtersApplied": null, "filtersPassed": null, "filtersFailed": [], "annotation": null}, "referenceName": null, "start": null, "end": null, "variantCallingAnnotations": {"filtersApplied": null, "filtersPassed": null, "filtersFailed": [], "downsampled": null, "baseQRankSum": null, "fisherStrandBiasPValue": 3.0, "rmsMapQ": 0.0, "mapq0Reads": 5, "mqRankSum": null, "readPositionRankSum": null, "genotypePriors": [], "genotypePosteriors": [], "vqslod": null, "culprit": null, "attributes": {}}, "sampleId": "NA12878", "sampleDescription": null, "processingDescription": null, "alleles": ["REF", "ALT"], "expectedAlleleDosage": null, "referenceReadDepth": null, "alternateReadDepth": null, "readDepth": null, "minReadDepth": null, "genotypeQuality": null, "genotypeLikelihoods": [], "nonReferenceLikelihoods": [], "strandBiasComponents": [0, 2], "splitFromMultiAllelic": false, "phased": false, "phaseSetId": null, "phaseQuality": null}.
- Convert ADAM SNV w/ genotypes but bad SB to htsjdk with lenient validation
- Convert htsjdk multi-allelic sites-only SNVs to ADAM
- Convert htsjdk multi-allelic SNVs to ADAM and back to htsjdk
- Convert gVCF reference records to ADAM
- Convert htsjdk variant context with no IDs to ADAM
- Convert htsjdk variant context with one ID to ADAM
- Convert htsjdk variant context with multiple IDs to ADAM
- Convert ADAM variant context with no names to htsjdk
- Convert ADAM variant context with one name to htsjdk
- Convert ADAM variant context with multiple names to htsjdk
- Convert ADAM variant context with null filters applied to htsjdk
- Convert ADAM variant context with no filters applied to htsjdk
- Convert ADAM variant context with passing filters to htsjdk
- Convert ADAM variant context with failing filters to htsjdk
- no phasing set going htsjdk->adam
- phased but no phase set info going htsjdk->adam
- set phase set and extract going htsjdk->adam
- no allelic depth going htsjdk->adam
- set allelic depth going htsjdk->adam
- no gt read depth going htsjdk->adam
- extract gt read depth going htsjdk->adam
- no min gt read depth going htsjdk->adam
- extract min gt read depth going htsjdk->adam
- no genotype quality going htsjdk->adam
- extract genotype quality going htsjdk->adam
- no phred likelihood going htsjdk->adam
- extract phred likelihoods going htsjdk->adam
- no strand bias info going htsjdk->adam
- extract strand bias info going htsjdk->adam
- no filters going htsjdk->adam
- filters passed going htsjdk->adam
- extract single filter going htsjdk->adam
- extract multiple filters going htsjdk->adam
- no fisher strand bias going htsjdk->adam
- extract fisher strand bias going htsjdk->adam
- no rms mapping quality going htsjdk->adam
- extract rms mapping quality going htsjdk->adam
- no mq0 going htsjdk->adam
- extract mq0 going htsjdk->adam
- no gt read depth going adam->htsjdk
- extract gt read depth going adam->htsjdk
- throw iae if missing one component of gt read depth going adam->htsjdk
- no depth going adam->htsjdk
- extract depth going adam->htsjdk
- no min depth going adam->htsjdk
- extract min depth going adam->htsjdk
- no quality going adam->htsjdk
- extract quality going adam->htsjdk
- no genotype likelihoods going adam->htsjdk
- extract genotype likelihoods going adam->htsjdk
- no strand bias going adam->htsjdk
- malformed strand bias going adam->htsjdk
- extract strand bias going adam->htsjdk
- no phasing info going adam->htsjdk
- unphased going adam->htsjdk
- phased but no ps/pq going adam->htsjdk
- phased but no pq going adam->htsjdk
- phased but no ps going adam->htsjdk
- phased going adam->htsjdk
- no filter info going adam->htsjdk
- if filters applied, must set passed/failed going adam->htsjdk
- filters passed going adam->htsjdk
- if filters failed, must set filters failed going adam->htsjdk
- single filter failed going adam->htsjdk
- multiple filters failed going adam->htsjdk
- no fisher strand bias going adam->htsjdk
- extract fisher strand bias going adam->htsjdk
- no rms mapping quality going adam->htsjdk
- extract rms mapping quality going adam->htsjdk
- no mapping quality 0 reads going adam->htsjdk
- extract mapping quality 0 reads going adam->htsjdk
- no names set going htsjdk->adam
- single name set going htsjdk->adam
- multiple names set going htsjdk->adam
- no quality going htsjdk->adam
- quality set going htsjdk->adam
- no filters applied going htsjdk->adam
- filters applied and passed going htsjdk->adam
- single filter applied and failed going htsjdk->adam
- multiple filters applied and failed going htsjdk->adam
- no names set adam->htsjdk
- set a single name adam->htsjdk
- set multiple names adam->htsjdk
- no qual set adam->htsjdk
- qual is set adam->htsjdk
- no filters applied adam->htsjdk
- null filters applied adam->htsjdk
- filters passed adam->htsjdk
- if filter failed, must have filters adam->htsjdk
- single filter failed adam->htsjdk
- multiple filters failed adam->htsjdk
- no ancestral allele set going htsjdk->adam
- ancestral allele set going htsjdk->adam
- no dbsnp membership set going htsjdk->adam
- dbsnp membership set going htsjdk->adam
- no hapmap2 membership set going htsjdk->adam
- hapmap2 membership set going htsjdk->adam
- no hapmap3 membership set going htsjdk->adam
- hapmap3 membership set going htsjdk->adam
- no validated set going htsjdk->adam
- validated set going htsjdk->adam
- no 1000G membership set going htsjdk->adam
- 1000G membership set going htsjdk->adam
- not somatic going htsjdk->adam
- somatic going htsjdk->adam
- no allele count going htsjdk->adam
- single allele count going htsjdk->adam
- multiple allele counts going htsjdk->adam
- no allele frequency going htsjdk->adam
- single allele frequency going htsjdk->adam
- single allele frequency is +Inf going htsjdk->adam
- single allele frequency is -Inf going htsjdk->adam
- multiple allele frequencies going htsjdk->adam
- no CIGAR going htsjdk->adam
- single CIGAR going htsjdk->adam
- multiple CIGARs going htsjdk->adam
- no read depth going htsjdk->adam
- single read depth going htsjdk->adam
- multiple read depths going htsjdk->adam
- no forward read depth going htsjdk->adam
- single forward read depth going htsjdk->adam
- multiple forward read depths going htsjdk->adam
- no reverse read depth going htsjdk->adam
- single reverse read depth going htsjdk->adam
- multiple reverse read depths going htsjdk->adam
- no ancestral allele set adam->htsjdk
- ancestral allele set adam->htsjdk
- no dbsnp membership set adam->htsjdk
- dbsnp membership set adam->htsjdk
- no hapmap2 membership set adam->htsjdk
- hapmap2 membership set adam->htsjdk
- no hapmap3 membership set adam->htsjdk
- hapmap3 membership set adam->htsjdk
- no validated set adam->htsjdk
- validated set adam->htsjdk
- no 1000G membership set adam->htsjdk
- 1000G membership set adam->htsjdk
- no allele count set adam->htsjdk
- allele count set adam->htsjdk
- no allele frequency set adam->htsjdk
- allele frequency set adam->htsjdk
- no cigar set adam->htsjdk
- cigar set adam->htsjdk
- no read depth set adam->htsjdk
- read depth set adam->htsjdk
- read depth without reference read depth
- reference read depth without read depth
- no forward read depth set adam->htsjdk
- forward read depth set adam->htsjdk
- reference forward read depth without forward read depth
- forward read depth without reference forward read depth
- no reverse read depth set adam->htsjdk
- reverse read depth set adam->htsjdk
- reference reverse read depth without reverse read depth
- reverse read depth without reference reverse read depth
- VCF INFO attribute Number=0 Type=Flag adam->htsjdk
- VCF INFO attribute Number=4 Type=Flag adam->htsjdk unsupported, strict !!! IGNORED !!!
- VCF INFO attribute Number=1 Type=Integer adam->htsjdk
- VCF INFO attribute Number=4 Type=Integer adam->htsjdk
- VCF INFO attribute Number=A Type=Integer adam->htsjdk
- VCF INFO attribute Number=R Type=Integer adam->htsjdk
- VCF INFO attribute Number=R Type=String adam->htsjdk
- VCF INFO attribute Number=G Type=String adam->htsjdk not supported
- VCF INFO attribute Number=0 Type=Flag htsjdk->adam
- VCF INFO attribute Number=1 Type=Integer htsjdk->adam
- VCF INFO attribute Number=4 Type=Integer htsjdk->adam
- VCF INFO attribute Number=4 Type=Float htsjdk->adam
- VCF INFO attribute Number=A Type=Integer htsjdk->adam
- VCF INFO attribute Number=R Type=Integer htsjdk->adam
- VCF INFO attribute Number=R Type=String htsjdk->adam
- VCF INFO attribute Number=G Type=String htsjdk->adam not supported
- VCF FORMAT attribute Number=0 Type=Flag adam->htsjdk not supported
- VCF FORMAT attribute Number=1 Type=Integer adam->htsjdk
- VCF FORMAT attribute Number=4 Type=Integer adam->htsjdk
- VCF FORMAT attribute Number=A Type=Integer adam->htsjdk
- VCF FORMAT attribute Number=R Type=Integer adam->htsjdk
- VCF FORMAT attribute Number=R Type=String adam->htsjdk
- VCF FORMAT attribute Number=0 Type=Flag htsjdk->adam is not supported
- VCF FORMAT attribute Number=1 Type=Integer htsjdk->adam
- VCF FORMAT attribute Number=4 Type=Integer htsjdk->adam
- VCF FORMAT attribute Number=4 Type=Float htsjdk->adam
- VCF FORMAT attribute Number=A Type=Integer htsjdk->adam
- VCF FORMAT attribute Number=R Type=Integer htsjdk->adam
- VCF FORMAT attribute Number=R Type=String htsjdk->adam
- VCF FORMAT attribute Number=G Type=String htsjdk->adam
- respect end position for symbolic alts
FastqRecordConverterSuite:
- test read name suffix and index of pair must match
- test parseReadInFastq, read suffix removal
- test parseReadInFastq, read metadata removal
- test parseReadInFastq, read quality shorter than read length, padded with B
- test parseReadInFastq, read quality longer than read length 
- test parseReadInFastq, no read quality
- testing FastqRecordConverter.convertPair with valid input
- testing FastqRecordConverter.convertPair with 7-line invalid input
- testing FastqRecordConverter.convertPair with invalid input: first read length and qual don't match
- testing FastqRecordConverter.convertPair with invalid input: second read length and qual don't match
- testing FastqRecordConverter.convertFragment with valid input
- testing FastqRecordConverter.convertFragment with another valid input having /1, /2 suffixes
- testing FastqRecordConverter.convertFragment with invalid input: different read names
- testing FastqRecordConverter.convertRead with valid input
- testing FastqRecordConverter.convertRead with valid input: setFirstOfPair set to true
- testing FastqRecordConverter.convertRead with valid input: setSecondOfPair set to true
- testing FastqRecordConverter.convertRead with valid input: setFirstOfPair and setSecondOfPair both true
- testing FastqRecordConverter.convertRead with valid input, no qual, strict
- testing FastqRecordConverter.convertRead with valid input, no qual, not strict
AttributeSuite:
- test SAMTagAndValue parsing
- Attributes can be correctly re-encoded as text SAM tags
GFF3HeaderWriterSuite:
- write gff3 header pragma
BinQualitiesSuite:
- make a quality score bin
- can't have a quality score bin with negative score
- can't have a quality score bin with high score below low
- can't have a quality score bin with high score above 255
- can't have a quality score bin with score outside
- make a quality score bin from a string
- quality score bin must have exactly 3 elements
- quality score bin must be integers
- must define at least one bin
- build multiple bins
- rewrite quality scores for a read
- rewriting quality scores fails if bins overlap
- rewriting quality scores fails if base is out of bounds
- skip read if qualities are null
- rewrite a read
IndexedFastaFileSuite:
- correctly generates sequence dictionary from .dict file
- correctly gets sequence
- fails when fai index is not provided
2020-10-19 19:08:27 WARN  IndexedFastaFile:190 - Caught exception java.lang.NullPointerException when loading FASTA sequence dictionary. Using empty dictionary instead.
- passes when dict is not provided and ValidationStringency = LENIENT
SAMRecordConverterSuite:
- testing the fields in an Alignment obtained from a mapped samRecord conversion
- testing the fields in an Alignment obtained from an unmapped samRecord conversion
- '*' quality gets nulled out
- don't keep denormalized fields
ADAMContextSuite:
- ctr is accessible
- load from an empty directory
- sc.loadParquet should not fail on unmapped reads
- sc.loadParquet should not load a file without a type specified
- can read a small .SAM file
- can read a small .SAM file with a bad header with lenient validation
- loading a sam file with a bad header and strict stringency should fail
- can read a small .CRAM file
- can read a small .SAM with all attribute tag types
- can filter a .SAM file based on quality
- Can convert to phred
- Can convert from phred
- Can read a .gtf file
- Can read a .bed file
- Can read a BED 12 file
- Can read a .narrowPeak file
- Can read a .interval_list file
2020-10-19 19:08:30 WARN  VariantContextConverter:190 - Saw invalid info field java.lang.IllegalArgumentException: Multivalued flags are not supported for INFO lines: INFO=<ID=ABADFLAG,Number=.,Type=Flag,Description="A no good, very bad flag.">. Ignoring...
2020-10-19 19:08:30 WARN  VariantContextConverter:190 - Generating field extractor from header line INFO=<ID=ABADFLAG,Number=.,Type=Flag,Description="A no good, very bad flag."> failed: java.lang.IllegalArgumentException: Multivalue flags are not supported for INFO lines: INFO=<ID=ABADFLAG,Number=.,Type=Flag,Description="A no good, very bad flag.">
- can read a small .vcf file with a validation issue
- can read a small .vcf file
2020-10-19 19:08:30 WARN  VCFInputFormat:218 - file:/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/target/2.11.12/test-classes/test.vcf.gz is not splittable, consider using block-compressed gzip (BGZF)
- can read a gzipped .vcf file
- can read a vcf file with an empty alt
- can read a BGZF gzipped .vcf file with .gz file extension
- can read a BGZF gzipped .vcf file with .bgz file extension
- can read a vcf file with a projection
- can read an uncompressed BCFv2.2 file !!! IGNORED !!!
- can read a BGZF compressed BCFv2.2 file !!! IGNORED !!!
- loadIndexedVcf with 1 ReferenceRegion
- loadIndexedVcf with multiple ReferenceRegions
- load block compressed interleaved fastq
- import records from interleaved FASTQ: 1
- import records from interleaved FASTQ: 2
- import records from interleaved FASTQ: 3
- import records from interleaved FASTQ: 4
- import block compressed single fastq
- import records from single ended FASTQ: 1
- import records from single ended FASTQ: 2
- import records from single ended FASTQ: 3
- import records from single ended FASTQ: 4
- filter on load using the filter2 API
- saveAsParquet with file path
- saveAsParquet with file path, block size, page size
- saveAsParquet with save args
- read a HLA fasta from GRCh38
- read a gzipped fasta file
- read a fasta file with comments, gaps, and translation stops
- loadIndexedBam with 1 ReferenceRegion
- loadIndexedBam with multiple ReferenceRegions
- loadIndexedBam with multiple ReferenceRegions and indexed bams
- loadIndexedBam with multiple ReferenceRegions and a directory of indexed bams
- loadIndexedBam should throw exception without an index file
- loadIndexedBam should work with indexed file with index naming format <filename>.bai
- loadIndexedBam glob should throw exception without an index file
- loadBam with a glob
- loadBam with a directory
- load vcf with a glob
- load vcf from a directory
- load gvcf which contains a multi-allelic row from a directory
- load and save gvcf which contains rows without likelihoods
- parse annotations for multi-allelic rows
- load parquet with globs
- bad glob should fail
- empty directory should fail
- can read a SnpEff-annotated .vcf file
- loadAlignments should not fail on single-end and paired-end fastq reads
- load queryname sorted sam as fragments
- load query grouped sam as fragments
- load paired fastq
- load paired fastq without cache
- load paired fastq as fragments
- load paired fastq as fragments without cache
- load HTSJDK sequence dictionary
- load Bedtools .genome file as sequence dictionary
- load Bedtools .genome.txt file as sequence dictionary
- load UCSC Genome Browser chromInfo.txt file as sequence dictionary
- load unrecognized file extension as sequence dictionary fails
- load BED features with Bedtools .genome file as sequence dictionary
- load BED features with Bedtools .genome file as sequence dictionary, no matching features
- convert program record
- load program record from sam file
- load alignments from data frame
- load features from data frame
- load fragments from data frame
- load genotypes from data frame with default header lines
- load genotypes from data frame with empty header lines
- load reads from data frame
- load sequences from data frame
- load slices from data frame
- load variant contexts from data frame with default header lines
- load variant contexts from data frame with empty header lines
- load variants from data frame with default header lines
- load variants from data frame with empty header lines
- load alignments with metadata from data frame
- load features with metadata from data frame
- load fragments with metadata from data frame
- load genotypes with metadata from data frame
- load variant contexts with metadata from data frame
- load variants with metadata from data frame
- read a fasta file with short sequences as sequences
- read a fasta file with long sequences as sequences
- read a fasta file with short sequences as slices
- read a fasta file with long sequences as slices
CycleCovariateSuite:
- compute covariates for an unpaired read on the negative strand
- compute covariates for a first-of-pair read on the negative strand
- compute covariates for a second-of-pair read on the negative strand
- compute covariates for an unpaired read on the positive strand
- compute covariates for a first-of-pair read on the positive strand
- compute covariates for a second-of-pair read on the positive strand
AlignmentConverterSuite:
- testing the fields in a converted ADAM Read
- converting a read with null quality is OK
- convert a read to fastq
- reverse complement reads when converting to fastq
- converting to fastq with unmapped reads where  read reverse complemented flag (Ox10) was NOT set
- converting to fastq with unmapped reads where reverse complemented flag (0x10) was set
- converting a fragment with no alignments should yield unaligned reads
- converting a fragment with alignments should restore the alignments
- read negative strand is propagated even when not mapped
ConsensusGeneratorFromKnownsSuite:
- no consensuses for empty target
- no consensuses for reads that don't overlap a target
- return a consensus for read overlapping a single target
RichCigarSuite:
- moving 2 bp from a deletion to a match operator
- moving 2 bp from a insertion to a match operator
- moving 1 base in a two element cigar
- move to start of read
- process right clipped cigar
- process left clipped cigar
- process cigar clipped on both ends
MDTaggingSuite:
- test adding MDTags over boundary
- test adding MDTags; reads span full contig
- test adding MDTags; reads start inside first fragment
- test adding MDTags; reads end inside last fragment
- test adding MDTags; reads start inside first fragment and end inside last fragment
- test adding MDTags; reads start and end in middle fragements
2020-10-19 19:09:13 WARN  BlockManager:66 - Putting block rdd_5_3 failed due to exception java.lang.Exception: Contig chr2 not found in reference map with keys: chr1.
2020-10-19 19:09:13 WARN  BlockManager:66 - Block rdd_5_3 could not be removed as it was not found on disk or in memory
2020-10-19 19:09:13 ERROR Executor:91 - Exception in task 3.0 in stage 2.0 (TID 11)
java.lang.Exception: Contig chr2 not found in reference map with keys: chr1
	at org.bdgenomics.adam.util.ReferenceContigMap$$anonfun$extract$1.apply(ReferenceContigMap.scala:63)
	at org.bdgenomics.adam.util.ReferenceContigMap$$anonfun$extract$1.apply(ReferenceContigMap.scala:63)
	at scala.collection.MapLike$class.getOrElse(MapLike.scala:128)
	at scala.collection.AbstractMap.getOrElse(Map.scala:59)
	at org.bdgenomics.adam.util.ReferenceContigMap.extract(ReferenceContigMap.scala:61)
	at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1$$anonfun$apply$2.apply(MDTagging.scala:76)
	at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1$$anonfun$apply$2.apply(MDTagging.scala:71)
	at scala.Option$WithFilter.map(Option.scala:207)
	at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1.apply(MDTagging.scala:71)
	at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1.apply(MDTagging.scala:69)
	at scala.collection.Iterator$$anon$11.next(Iterator.scala:410)
	at org.apache.spark.storage.memory.MemoryStore.putIterator(MemoryStore.scala:222)
	at org.apache.spark.storage.memory.MemoryStore.putIteratorAsValues(MemoryStore.scala:299)
	at org.apache.spark.storage.BlockManager$$anonfun$doPutIterator$1.apply(BlockManager.scala:1165)
	at org.apache.spark.storage.BlockManager$$anonfun$doPutIterator$1.apply(BlockManager.scala:1156)
	at org.apache.spark.storage.BlockManager.doPut(BlockManager.scala:1091)
	at org.apache.spark.storage.BlockManager.doPutIterator(BlockManager.scala:1156)
	at org.apache.spark.storage.BlockManager.getOrElseUpdate(BlockManager.scala:882)
	at org.apache.spark.rdd.RDD.getOrCompute(RDD.scala:357)
	at org.apache.spark.rdd.RDD.iterator(RDD.scala:308)
	at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90)
	at org.apache.spark.scheduler.Task.run(Task.scala:123)
	at org.apache.spark.executor.Executor$TaskRunner$$anonfun$10.apply(Executor.scala:408)
	at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1360)
	at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:414)
	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
	at java.lang.Thread.run(Thread.java:748)
2020-10-19 19:09:13 WARN  TaskSetManager:66 - Lost task 3.0 in stage 2.0 (TID 11, localhost, executor driver): java.lang.Exception: Contig chr2 not found in reference map with keys: chr1
	at org.bdgenomics.adam.util.ReferenceContigMap$$anonfun$extract$1.apply(ReferenceContigMap.scala:63)
	at org.bdgenomics.adam.util.ReferenceContigMap$$anonfun$extract$1.apply(ReferenceContigMap.scala:63)
	at scala.collection.MapLike$class.getOrElse(MapLike.scala:128)
	at scala.collection.AbstractMap.getOrElse(Map.scala:59)
	at org.bdgenomics.adam.util.ReferenceContigMap.extract(ReferenceContigMap.scala:61)
	at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1$$anonfun$apply$2.apply(MDTagging.scala:76)
	at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1$$anonfun$apply$2.apply(MDTagging.scala:71)
	at scala.Option$WithFilter.map(Option.scala:207)
	at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1.apply(MDTagging.scala:71)
	at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1.apply(MDTagging.scala:69)
	at scala.collection.Iterator$$anon$11.next(Iterator.scala:410)
	at org.apache.spark.storage.memory.MemoryStore.putIterator(MemoryStore.scala:222)
	at org.apache.spark.storage.memory.MemoryStore.putIteratorAsValues(MemoryStore.scala:299)
	at org.apache.spark.storage.BlockManager$$anonfun$doPutIterator$1.apply(BlockManager.scala:1165)
	at org.apache.spark.storage.BlockManager$$anonfun$doPutIterator$1.apply(BlockManager.scala:1156)
	at org.apache.spark.storage.BlockManager.doPut(BlockManager.scala:1091)
	at org.apache.spark.storage.BlockManager.doPutIterator(BlockManager.scala:1156)
	at org.apache.spark.storage.BlockManager.getOrElseUpdate(BlockManager.scala:882)
	at org.apache.spark.rdd.RDD.getOrCompute(RDD.scala:357)
	at org.apache.spark.rdd.RDD.iterator(RDD.scala:308)
	at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90)
	at org.apache.spark.scheduler.Task.run(Task.scala:123)
	at org.apache.spark.executor.Executor$TaskRunner$$anonfun$10.apply(Executor.scala:408)
	at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1360)
	at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:414)
	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
	at java.lang.Thread.run(Thread.java:748)

2020-10-19 19:09:13 ERROR TaskSetManager:70 - Task 3 in stage 2.0 failed 1 times; aborting job
- try realigning a read on a missing contig, stringency == STRICT
2020-10-19 19:09:14 WARN  MDTagging:190 - Caught exception when processing read chr2: java.lang.Exception: Contig chr2 not found in reference map with keys: chr1
- try realigning a read on a missing contig, stringency == LENIENT
FileExtensionsSuite:
- ends in gzip extension
- is a vcf extension
PhredUtilsSuite:
- convert low phred score to log and back
- convert high phred score to log and back
- convert overflowing phred score to log and back and clip
- convert negative zero log probability to phred and clip
- round trip log probabilities
ReadDatasetSuite:
- create a new read genomic dataset
- create a new read genomic dataset with sequence dictionary
- save as parquet
- round trip as parquet
- save as fastq
- save as single file fastq
- filter read genomic dataset by reference region
- broadcast region join reads and features
- shuffle region join reads and features
- convert reads to alignments
- convert reads to sequences
- convert reads to slices
AlignmentDatasetSuite:
- sorting reads
- unmapped reads go at the end when sorting
- coverage does not fail on unmapped reads
- computes coverage
- computes coverage with multiple samples
- merges adjacent records with equal coverage values
- sorting reads by reference index
- round trip from ADAM to SAM and back to ADAM produces equivalent Read values
- round trip with single CRAM file produces equivalent Read values
- round trip with sharded CRAM file produces equivalent Read values
- SAM conversion sets read mapped flag properly
- load long FASTQ reads
- load FASTQ with no bases
- convert malformed FASTQ (no quality scores) => SAM => well-formed FASTQ => SAM
- round trip from ADAM to FASTQ and back to ADAM produces equivalent Read values
- round trip from ADAM to paired-FASTQ and back to ADAM produces equivalent Read values
- writing a small file with tags should produce the expected result
- writing a small sorted file as SAM should produce the expected result
- writing unordered sam from unordered sam
- writing ordered sam from unordered sam
- write single sam file back
- write single bam file back
- saveAsParquet with save args, sequence dictionary, and read group dictionary
- load parquet to sql, save, re-read from avro
- load from sam, save as partitioned parquet, and re-read from partitioned parquet
- save as SAM format
- save as sorted SAM format
- save as BAM format
- save as sorted BAM format
- save as FASTQ format
- save as ADAM parquet format
- saveAsSam SAM format
- saveAsSam SAM format single file
- saveAsSam sorted SAM format single file
- saveAsSam BAM format
- saveAsSam BAM format single file
- saveAsSam sorted BAM format single file
- saveAsFastq
- saveAsFastq as single file
- saveAsFastq with original base qualities
- saveAsFastq sorted by read name
- saveAsFastq sorted by read name with original base qualities
2020-10-19 19:09:39 WARN  RDDBoundAlignmentDataset:190 - Found 20 read names that don't occur exactly twice:
	1x:	20

Samples:
	simread:1:237728409:true
	simread:1:195211965:false
	simread:1:163841413:false
	simread:1:231911906:false
	simread:1:26472783:false
	simread:1:165341382:true
	simread:1:240344442:true
	simread:1:50683371:false
	simread:1:240997787:true
	simread:1:14397233:false
	simread:1:207027738:true
	simread:1:20101800:true
	simread:1:101556378:false
	simread:1:37577445:false
	simread:1:189606653:true
	simread:1:5469106:true
	simread:1:186794283:true
	simread:1:89554252:false
	simread:1:153978724:false
	simread:1:169801933:true
- saveAsFastq paired FASTQ
2020-10-19 19:09:40 WARN  RDDBoundAlignmentDataset:190 - Found 20 read names that don't occur exactly twice:
	1x:	20

Samples:
	simread:1:237728409:true
	simread:1:195211965:false
	simread:1:163841413:false
	simread:1:231911906:false
	simread:1:26472783:false
	simread:1:165341382:true
	simread:1:240344442:true
	simread:1:50683371:false
	simread:1:240997787:true
	simread:1:14397233:false
	simread:1:207027738:true
	simread:1:20101800:true
	simread:1:101556378:false
	simread:1:37577445:false
	simread:1:189606653:true
	simread:1:5469106:true
	simread:1:186794283:true
	simread:1:89554252:false
	simread:1:153978724:false
	simread:1:169801933:true
- saveAsPairedFastq
2020-10-19 19:09:41 WARN  RDDBoundAlignmentDataset:190 - Found 20 read names that don't occur exactly twice:
	1x:	20

Samples:
	simread:1:237728409:true
	simread:1:195211965:false
	simread:1:163841413:false
	simread:1:231911906:false
	simread:1:26472783:false
	simread:1:165341382:true
	simread:1:240344442:true
	simread:1:50683371:false
	simread:1:240997787:true
	simread:1:14397233:false
	simread:1:207027738:true
	simread:1:20101800:true
	simread:1:101556378:false
	simread:1:37577445:false
	simread:1:189606653:true
	simread:1:5469106:true
	simread:1:186794283:true
	simread:1:89554252:false
	simread:1:153978724:false
	simread:1:169801933:true
- saveAsPairedFastq as single files
- don't lose any reads when piping as SAM
2020-10-19 19:09:52 WARN  OutFormatterRunner:190 - Piped command List(sleep, 10) timed out after 5 seconds.
2020-10-19 19:09:52 WARN  OutFormatterRunner:190 - Piped command List(sleep, 10) timed out after 5 seconds.
- lose all records when a command times out
- lose no records without a timeout
2020-10-19 19:10:13 WARN  OutFormatterRunner:190 - Piped command List(python, /tmp/adamTestMvnp6vi9tr/spark-dbb35c88-30a9-42e1-9de7-db972ea12b09/userFiles-282793c1-889b-4717-93ea-929b5699b6d1/timeout.py) timed out after 5 seconds.
2020-10-19 19:10:13 WARN  OutFormatterRunner:190 - Piped command List(python, /tmp/adamTestMvnp6vi9tr/spark-dbb35c88-30a9-42e1-9de7-db972ea12b09/userFiles-282793c1-889b-4717-93ea-929b5699b6d1/timeout.py) timed out after 5 seconds.
- lose some records when a command times out
- don't lose any reads when piping as SAM using java pipe
- don't lose any reads when piping as BAM
- don't lose any reads when piping fastq to sam
- can properly set environment variables inside of a pipe
- read vcf from alignment pipe !!! IGNORED !!!
- use broadcast join to pull down reads mapped to targets
- use broadcast join against to pull down reads mapped to targets
- use right outer broadcast join to pull down reads mapped to targets
- use right outer broadcast join against to pull down reads mapped to targets
- use shuffle join with feature spanning partitions
- use shuffle join to pull down reads mapped to targets
- use shuffle join with flankSize to pull down reads mapped close to targets
- use right outer shuffle join to pull down reads mapped to targets
- use left outer shuffle join to pull down reads mapped to targets
- use full outer shuffle join to pull down reads mapped to targets
- use shuffle join with group by to pull down reads mapped to targets
- use right outer shuffle join with group by to pull down reads mapped to targets
- cannot provide empty quality score bins
- cannot provide bins with a gap
- cannot provide overlapping bins
- binning quality scores in reads succeeds even if reads have no quality scores
- bin quality scores in reads
- union two read files together
- test k-mer counter
- test dataset based k-mer counter
- transform reads to slice genomic dataset
- transform reads to coverage genomic dataset
- transform reads to feature genomic dataset
- transform reads to fragment genomic dataset
- transform reads to genotype genomic dataset
loading /tmp/adamTestMvnp6vi9tr/TempSuite5327568692522014251.adam as parquet into RDD...
loading /tmp/adamTestMvnp6vi9tr/TempSuite6533199953547546264.adam as parquet into RDD...
- transform reads to variant genomic dataset
- cannot have a null processing step ID
- convert a processing description to htsjdk
- GenomicDataset.sort does not fail on unmapped reads
- GenomicDataset.sortLexicographically does not fail on unmapped reads
- left normalize indels
- running base recalibration with downsampling doesn't drop reads
- filter RDD bound alignments by MAPQ
- filter dataset bound alignments by MAPQ
- filter RDD bound unaligned alignments
- filter dataset bound unaligned alignments
- filter RDD bound unpaired alignments
- filter dataset bound unpaired alignments
- filter RDD bound duplicate alignments
- filter dataset bound duplicate alignments
- filter RDD bound alignments to primary alignments
- filter dataset bound alignments to primary alignments
- filter RDD bound alignments to read group
- filter dataset bound alignments to read group
- filter RDD bound alignments to read groups
- filter dataset bound alignments to read groups
- filter RDD bound alignments to sample
- filter dataset bound alignments to sample
- filter RDD bound alignments to samples
- filter dataset bound alignments to samples
- sort by read name
- transform dataset via java API
- convert alignments to reads
SmithWatermanSuite:
- gather max position from simple scoring matrix
- gather max position from irregular scoring matrix
- gather max position from irregular scoring matrix with deletions
- score simple alignment with constant gap
- score irregular scoring matrix
- score irregular scoring matrix with indel
- can unroll cigars correctly
- execute simple trackback
- execute trackback with indel
- run end to end smith waterman for simple reads
- run end to end smith waterman for short sequences with indel
- run end to end smith waterman for longer sequences with snp
- run end to end smith waterman for longer sequences with short indel
- run end to end smith waterman for shorter sequence in longer sequence
- run end to end smith waterman for shorter sequence in longer sequence, with indel
- smithWaterman - simple alignment
MdTagSuite:
- null md tag
- zero length md tag
- md tag with non-digit initial value
- md tag invalid base
- md tag, pure insertion
- md tag, pure insertion, test 2
- md tag pure insertion equality
- md tag equality and hashcode
- valid md tags
- get start of read with no mismatches or deletions
- get start of read with no mismatches, but with a deletion at the start
- get start of read with mismatches at the start
- get end of read with no mismatches or deletions
- check that mdtag and rich record return same end
- get end of read with no mismatches, but a deletion at end
- CIGAR with N operator
- CIGAR with multiple N operators
- CIGAR with P operators
- Get correct matches for mdtag with insertion
- Get correct matches for mdtag with mismatches and insertion
- Get correct matches for mdtag with insertion between mismatches
- Get correct matches for mdtag with intron between mismatches
- Get correct matches for mdtag with intron and deletion between mismatches
- Throw exception when number of deleted bases in mdtag disagrees with CIGAR
- Get correct matches for mdtag with mismatch, insertion and deletion
- Get correct matches for mdtag with mismatches, insertion and deletion
- Get correct matches for MDTag with mismatches and deletions
- Get correct matches base from MDTag and CIGAR with N
- get end of read with mismatches and a deletion at end
- get correct string out of mdtag with no mismatches
- get correct string out of mdtag with mismatches at start
- get correct string out of mdtag with deletion at end
- get correct string out of mdtag with mismatches at end
- get correct string out of complex mdtag
- check complex mdtag
- get gapped reference
- move a cigar alignment by two for a read
- rewrite alignment to all matches
- rewrite alignment to two mismatches followed by all matches
- rewrite alignment to include a deletion but otherwise all matches
- rewrite alignment to include an insertion at the start of the read but otherwise all matches
- create new md tag from read vs. reference, perfect match
- create new md tag from read vs. reference, perfect alignment match, 1 mismatch
- create new md tag from read vs. reference, alignment with deletion
- create new md tag from read vs. reference, alignment with insert
- handle '=' and 'X' operators
- CIGAR/MD tag mismatch should cause errors
GenomicDatasetSuite:
- processing a command that is the spark root directory should return an absolute path
- processing a command that is just a single word should do nothing
- processing a command should handle arguments that include spaces
- processing a command that is a single substitution should succeed
- processing a command that is multiple words should split the string
- process a command that is multiple words with a replacement
- process a command that is multiple words with multiple replacements
ParallelFileMergerSuite:
- cannot write both empty gzip block and cram eof
- buffer size must be non-negative
- get the size of several files
- block size must be positive and non-zero when trying to merge files
- must provide files to merge
- if two files are both below the block size, they should merge into one shard
- merge two files where one is greater than the block size
- merge a sharded sam file
- merge a sharded bam file
- merge a sharded cram file
- can't turn a negative index into a path
- generate a path from an index
IndelTableSuite:
- check for indels in a region with known indels
- check for indels in a contig that doesn't exist
- check for indels in a region without known indels
- build indel table from rdd of variants
SnpTableSuite:
- create an empty snp table
- create a snp table from variants on multiple contigs
- create a snp table from a larger set of variants
- perform lookups on multi-contig snp table
- perform lookups on larger snp table
RealignIndelsSuite:
- map reads to targets
- checking mapping to targets for artificial reads
- checking alternative consensus for artificial reads
- checking extraction of reference from reads
- checking realigned reads for artificial input
- checking realigned reads for artificial input with reference file
- checking realigned reads for artificial input using knowns
- checking realigned reads for artificial input using knowns and reads
- skip realigning reads if target is highly covered
- skip realignment if target is an insufficient LOD improvement
- realign reads to an insertion
- test mismatch quality scoring
- test mismatch quality scoring for no mismatches
- test mismatch quality scoring for offset
- test mismatch quality scoring with early exit
- test mismatch quality scoring after unpacking read
- we shouldn't try to realign a region with no target
- we shouldn't try to realign reads with no indel evidence
- test OP and OC tags
- realign a read with an insertion that goes off the end of the read
- if realigning a target doesn't improve the LOD, don't drop reads
- extract seq/qual from a read with no clipped bases
- extract seq/qual from a read with clipped bases at start
- extract seq/qual from a read with clipped bases at end
- if unclip is selected, don't drop base when extracting from a read with clipped bases
- get cigar and coordinates for read that spans indel, no clipped bases
- get cigar and coordinates for read that spans deletion, clipped bases at start
- get cigar and coordinates for read that falls wholly before insertion
- get cigar and coordinates for read that falls wholly after insertion
- get cigar and coordinates for read that falls wholly after deletion
- get cigar and coordinates for read that partially spans insertion, no clipped bases
- get cigar and coordinates for read that partially spans insertion, clipped bases at end
- get cigar and coordinates for read that partially spans insertion, clipped bases both ends
BaseQualityRecalibrationSuite:
- BQSR Test Input #1 w/ VCF Sites without caching
- BQSR Test Input #1 w/ VCF Sites with caching
- BQSR Test Input #1 w/ VCF Sites with serialized caching
DinucCovariateSuite:
- computing dinucleotide pairs for a single base sequence should return (N,N)
- compute dinucleotide pairs for a string of all valid bases
- compute dinucleotide pairs for a string with an N
- compute covariates for a read on the negative strand
- compute covariates for a read on the positive strand
SequenceDictionarySuite:
- Convert from sam sequence record and back
- Convert from SAM sequence dictionary file (with extra fields)
- merge into existing dictionary
- Convert from SAM sequence dictionary and back
- Can retrieve sequence by name
- SequenceDictionary's with same single element are equal
- SequenceDictionary's with same two elements are equals
- SequenceDictionary's with different elements are unequal
- SequenceDictionaries with same elements in different order are compatible
- isCompatible tests equality on overlap
- The addition + works correctly
- The append operation ++ works correctly
- ContainsRefName works correctly for different string types
- Apply on name works correctly for different String types
- convert from sam sequence record and back
- convert from sam sequence dictionary and back
- conversion to sam sequence dictionary has correct sort order
- load sequence dictionary from VCF file
- empty sequence dictionary must be empty
- test filter to reference name
- test filter to reference names
- test filter to reference name by function
GenomicPositionPartitionerSuite:
- partitions the UNMAPPED ReferencePosition into the top partition
- if we do not have a contig for a record, we throw an IAE
- partitioning into N pieces on M total sequence length, where N > M, results in M partitions
- correctly partitions a single dummy sequence into two pieces
- correctly counts cumulative lengths
- correctly partitions positions across two dummy sequences
- test that we can range partition ADAMRecords
- test that we can range partition ADAMRecords indexed by sample
- test that simple partitioning works okay on a reasonable set of ADAMRecords
- test indexed ReferencePosition partitioning works on a set of indexed ADAMRecords
CoverageSuite:
- Convert to coverage from valid Feature
- Convert to coverage from valid Feature with sampleId
- Convert to coverage from Feature with null/empty contigName fails with correct error
- Convert to coverage from Feature with no start/end position fails with correct error
- Convert to coverage from Feature with no score fails with correct error
InnerTreeRegionJoinSuite:
- Ensure same reference regions get passed together
- Overlapping reference regions
- Multiple reference regions do not throw exception
VariantDatasetSuite:
- union two variant genomic datasets together
- round trip to parquet
- save and reload from partitioned parquet
- use broadcast join to pull down variants mapped to targets
- use right outer broadcast join to pull down variants mapped to targets
- use shuffle join to pull down variants mapped to targets
- use right outer shuffle join to pull down variants mapped to targets
- use left outer shuffle join to pull down variants mapped to targets
- use full outer shuffle join to pull down variants mapped to targets
- use shuffle join with group by to pull down variants mapped to targets
- use right outer shuffle join with group by to pull down variants mapped to targets
- convert back to variant contexts
- load parquet to sql, save, re-read from avro
2020-10-19 19:11:47 WARN  DatasetBoundSliceDataset:190 - Saving directly as Parquet from SQL. Options other than compression codec are ignored.
- transform variants to slice genomic dataset
- transform variants to coverage genomic dataset
- transform variants to feature genomic dataset
- transform variants to fragment genomic dataset
- transform variants to read genomic dataset
- transform variants to genotype genomic dataset
- transform variants to variant context genomic dataset
- filter RDD bound variants to filters passed
- filter dataset bound variants to filters passed
- filter RDD bound variants by quality
- filter dataset bound variants by quality
- filter RDD bound variants by read depth
- filter dataset bound variants by read depth
- filter RDD bound variants by reference read depth
- filter dataset bound variants by reference read depth
- filter RDD bound single nucleotide variants
- filter dataset bound single nucleotide variants
- filter RDD bound multiple nucleotide variants
- filter dataset bound multiple nucleotide variants
- filter RDD bound indel variants
- filter dataset bound indel variants
- filter RDD bound variants to single nucleotide variants
- filter dataset bound variants to single nucleotide variants
- filter RDD bound variants to multiple nucleotide variants
- filter dataset bound variants to multiple nucleotide variants
- filter RDD bound variants to indel variants
- filter dataset bound variants to indel variants
- transform dataset via java API
Run completed in 6 minutes, 32 seconds.
Total number of tests run: 1175
Suites: completed 68, aborted 0
Tests: succeeded 1175, failed 0, canceled 0, ignored 5, pending 0
All tests passed.
[INFO] 
[INFO] <<< scoverage-maven-plugin:1.1.1:report (default-cli) < [scoverage]test @ adam-core-spark2_2.11 <<<
[INFO] 
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:report (default-cli) @ adam-core-spark2_2.11 ---
[INFO] [scoverage] Generating cobertura XML report...
[INFO] [scoverage] Generating scoverage XML report...
[INFO] [scoverage] Generating scoverage HTML report...
[INFO] 
[INFO] -------------< org.bdgenomics.adam:adam-apis-spark2_2.11 >--------------
[INFO] Building ADAM_2.11: APIs for Java, Python 0.33.0-SNAPSHOT          [5/7]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-apis-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-apis-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-apis-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-apis/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-apis-spark2_2.11 ---
[INFO] Modified 0 of 5 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-apis-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-apis/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-apis-spark2_2.11 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-apis/src/main/scala:-1: info: compiling
[INFO] Compiling 4 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-apis/target/2.11.12/classes at 1603159927838
[WARNING] warning: there were two feature warnings; re-run with -feature for details
[WARNING] one warning found
[INFO] prepare-compile in 0 s
[INFO] compile in 5 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-apis-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-apis-spark2_2.11 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-apis/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-apis-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 2 resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-apis-spark2_2.11 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-apis/src/test/java:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-apis/src/test/scala:-1: info: compiling
[INFO] Compiling 9 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-apis/target/2.11.12/test-classes at 1603159934235
[INFO] prepare-compile in 0 s
[INFO] compile in 4 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-apis-spark2_2.11 ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 8 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-apis/target/2.11.12/test-classes
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-apis-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-apis-spark2_2.11 ---
Discovery starting.
Discovery completed in 165 milliseconds.
Run starting. Expected test count is: 10
JavaADAMContextSuite:
2020-10-19 19:12:19 WARN  Utils:66 - Your hostname, amp-jenkins-staging-worker-02 resolves to a loopback address: 127.0.1.1; using 192.168.10.32 instead (on interface eno1)
2020-10-19 19:12:19 WARN  Utils:66 - Set SPARK_LOCAL_IP if you need to bind to another address
2020-10-19 19:12:20 WARN  NativeCodeLoader:62 - Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
- can read and write a small .SAM file
- loadIndexedBam with multiple ReferenceRegions
- can read and write a small .SAM file as fragments
- can read and write a small .bed file as features
- can read and write a small .bed file as coverage
- can read and write a small .vcf as genotypes
- can read and write a small .vcf as variants
- can read a two bit file
2020-10-19 19:12:29 WARN  RDDBoundSequenceDataset:190 - asSingleFile = true ignored when saving as Parquet.
- can read and write .fa as sequences
2020-10-19 19:12:30 WARN  RDDBoundSliceDataset:190 - asSingleFile = true ignored when saving as Parquet.
- can read and write .fa as slices
Run completed in 11 seconds, 459 milliseconds.
Total number of tests run: 10
Suites: completed 2, aborted 0
Tests: succeeded 10, failed 0, canceled 0, ignored 0, pending 0
All tests passed.
[INFO] 
[INFO] >>> scoverage-maven-plugin:1.1.1:report (default-cli) > [scoverage]test @ adam-apis-spark2_2.11 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-apis-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-apis-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-apis-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-apis/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-apis-spark2_2.11 ---
[INFO] Modified 0 of 5 .scala files
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:pre-compile (default-cli) @ adam-apis-spark2_2.11 ---
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-apis-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-apis/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-apis-spark2_2.11 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-apis/src/main/scala:-1: info: compiling
[INFO] Compiling 4 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-apis/target/2.11.12/scoverage-classes at 1603159951758
[INFO] [info] Cleaning datadir [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-apis/target/scoverage-data]
[INFO] [info] Beginning coverage instrumentation
[INFO] [info] Instrumentation completed [265 statements]
[INFO] [info] Wrote instrumentation file [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-apis/target/scoverage-data/scoverage.coverage.xml]
[INFO] [info] Will write measurement data to [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-apis/target/scoverage-data]
[WARNING] warning: there were two feature warnings; re-run with -feature for details
[WARNING] one warning found
[INFO] prepare-compile in 0 s
[INFO] compile in 5 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-apis-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:post-compile (default-cli) @ adam-apis-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-apis-spark2_2.11 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-apis/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-apis-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 2 resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-apis-spark2_2.11 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-apis/src/test/java:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-apis/src/test/scala:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-apis/target/generated-test-sources/test-annotations:-1: info: compiling
[INFO] Compiling 9 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-apis/target/2.11.12/test-classes at 1603159957864
[INFO] prepare-compile in 0 s
[INFO] compile in 4 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-apis-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-apis-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-apis-spark2_2.11 ---
Discovery starting.
Discovery completed in 202 milliseconds.
Run starting. Expected test count is: 10
JavaADAMContextSuite:
2020-10-19 19:12:43 WARN  Utils:66 - Your hostname, amp-jenkins-staging-worker-02 resolves to a loopback address: 127.0.1.1; using 192.168.10.32 instead (on interface eno1)
2020-10-19 19:12:43 WARN  Utils:66 - Set SPARK_LOCAL_IP if you need to bind to another address
2020-10-19 19:12:43 WARN  NativeCodeLoader:62 - Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
- can read and write a small .SAM file
- loadIndexedBam with multiple ReferenceRegions
- can read and write a small .SAM file as fragments
- can read and write a small .bed file as features
- can read and write a small .bed file as coverage
- can read and write a small .vcf as genotypes
- can read and write a small .vcf as variants
- can read a two bit file
2020-10-19 19:12:52 WARN  RDDBoundSequenceDataset:190 - asSingleFile = true ignored when saving as Parquet.
- can read and write .fa as sequences
2020-10-19 19:12:53 WARN  RDDBoundSliceDataset:190 - asSingleFile = true ignored when saving as Parquet.
- can read and write .fa as slices
Run completed in 10 seconds, 767 milliseconds.
Total number of tests run: 10
Suites: completed 2, aborted 0
Tests: succeeded 10, failed 0, canceled 0, ignored 0, pending 0
All tests passed.
[INFO] 
[INFO] <<< scoverage-maven-plugin:1.1.1:report (default-cli) < [scoverage]test @ adam-apis-spark2_2.11 <<<
[INFO] 
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:report (default-cli) @ adam-apis-spark2_2.11 ---
[INFO] [scoverage] Generating cobertura XML report...
[INFO] [scoverage] Generating scoverage XML report...
[INFO] [scoverage] Generating scoverage HTML report...
[INFO] 
[INFO] --------------< org.bdgenomics.adam:adam-cli-spark2_2.11 >--------------
[INFO] Building ADAM_2.11: CLI 0.33.0-SNAPSHOT                            [6/7]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-cli-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-cli-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:timestamp-property (timestamp-property) @ adam-cli-spark2_2.11 ---
[INFO] 
[INFO] --- git-commit-id-plugin:2.2.2:revision (default) @ adam-cli-spark2_2.11 ---
[INFO] 
[INFO] --- templating-maven-plugin:1.0.0:filter-sources (filter-src) @ adam-cli-spark2_2.11 ---
[INFO] Coping files with filtering to temporary directory.
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 1 resource
[INFO] Copied 1 files to output directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-cli/target/generated-sources/java-templates
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-cli/target/generated-sources/java-templates added.
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-cli-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-cli/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-cli-spark2_2.11 ---
[INFO] Modified 0 of 29 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-cli-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-cli/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-cli-spark2_2.11 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-cli/target/generated-sources/java-templates:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-cli/src/main/scala:-1: info: compiling
[INFO] Compiling 18 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-cli/target/2.11.12/classes at 1603159975551
[WARNING] warning: there was one deprecation warning; re-run with -deprecation for details
[WARNING] one warning found
[INFO] prepare-compile in 0 s
[INFO] compile in 7 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-cli-spark2_2.11 ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 1 source file to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-cli/target/2.11.12/classes
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-cli-spark2_2.11 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-cli/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-cli-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 15 resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-cli-spark2_2.11 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-cli/src/test/scala:-1: info: compiling
[INFO] Compiling 12 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-cli/target/2.11.12/test-classes at 1603159983557
[INFO] prepare-compile in 0 s
[INFO] compile in 6 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-cli-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-cli-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-cli-spark2_2.11 ---
Discovery starting.
Discovery completed in 230 milliseconds.
Run starting. Expected test count is: 44
TransformFeaturesSuite:
2020-10-19 19:13:11 WARN  Utils:66 - Your hostname, amp-jenkins-staging-worker-02 resolves to a loopback address: 127.0.1.1; using 192.168.10.32 instead (on interface eno1)
2020-10-19 19:13:11 WARN  Utils:66 - Set SPARK_LOCAL_IP if you need to bind to another address
2020-10-19 19:13:11 WARN  NativeCodeLoader:62 - Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
- can convert a simple BED file
TransformVariantsSuite:
- save a file sorted by contig index
- save a lexicographically sorted file
ViewSuite:
- -f 0 -F 0 is a no-op
- no -f or -F args is a no-op
- -f 4: only unmapped reads
- -F 4: only mapped reads
- -f 4 -F 8: unmapped reads with mapped mates
- -f 12: unmapped reads with unmapped mates
- -g 12: reads that are unmapped or whose mate is unmapped
- -F 12: mapped reads with mapped mates
- -g 36: unmapped reads or reads with mate on negative strand
- -F 36: unmapped reads or reads with mate on negative strand
TransformFragmentsSuite:
- load queryname sorted sam and save as parquet
- cannot sort if not saving as sam
2020-10-19 19:13:22 WARN  TransformFragments:190 - If loading and saving as alignments, consider using TransformAlignments instead
- load reads as sam and save them sorted
- bin quality scores on reads
TransformGenotypesSuite:
- save a file sorted by contig index
- save a lexicographically sorted file
- transform VCF without nested annotations
- transform VCF with nested annotations
AboutSuite:
- template variables have been replaced
- templated values are not empty
CoverageSuite:
- correctly calculates coverage from small sam file
MergeShardsSuite:
- merge shards from unordered sam to unordered sam
- unordered sam to ordered sam
- merge sharded bam
- merge sharded cram
TransformAlignmentsSuite:
- unordered sam to unordered sam
- unordered sam to ordered sam
- unordered sam, to adam, to sam
- unordered sam, to adam, to ordered sam
- put quality scores into bins
- run region predicate
ADAMMainSuite:
- default command groups is non empty
- module provides default command groups
- inject default command groups when called via main
- command groups is empty when called via apply
- single command group
- add new command group to default command groups
- module restores default command groups when called via apply
- custom module with single command group
- custom module with new command group added to default command groups
Adam2FastqSuite:
2020-10-19 19:13:31 WARN  RDDBoundAlignmentDataset:190 - Found 16 read names that don't occur exactly twice:
	1x:	16

Samples:
	SRR062634.16445865
	SRR062634.9119161
	SRR062634.17190076
	SRR062634.17969132
	SRR062634.7301099
	SRR062634.2087100
	SRR062634.20911784
	SRR062634.16769670
	SRR062634.18958430
	SRR062634.12099057
	SRR062634.12606172
	SRR062634.14985224
	SRR062634.10448889
	SRR062634.4789722
	SRR062634.3203184
	SRR062634.17698657
- convert SAM to paired FASTQ
Run completed in 21 seconds, 850 milliseconds.
Total number of tests run: 44
Suites: completed 12, aborted 0
Tests: succeeded 44, failed 0, canceled 0, ignored 0, pending 0
All tests passed.
[INFO] 
[INFO] >>> scoverage-maven-plugin:1.1.1:report (default-cli) > [scoverage]test @ adam-cli-spark2_2.11 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-cli-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-cli-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:timestamp-property (timestamp-property) @ adam-cli-spark2_2.11 ---
[INFO] 
[INFO] --- git-commit-id-plugin:2.2.2:revision (default) @ adam-cli-spark2_2.11 ---
[INFO] 
[INFO] --- templating-maven-plugin:1.0.0:filter-sources (filter-src) @ adam-cli-spark2_2.11 ---
[INFO] Coping files with filtering to temporary directory.
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 1 resource
[INFO] No files needs to be copied to output directory. Up to date: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-cli/target/generated-sources/java-templates
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-cli/target/generated-sources/java-templates added.
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-cli-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-cli/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-cli-spark2_2.11 ---
[INFO] Modified 0 of 29 .scala files
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:pre-compile (default-cli) @ adam-cli-spark2_2.11 ---
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-cli-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-cli/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-cli-spark2_2.11 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-cli/target/generated-sources/java-templates:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-cli/src/main/scala:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-cli/target/generated-sources/annotations:-1: info: compiling
[INFO] Compiling 18 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-cli/target/2.11.12/scoverage-classes at 1603160013684
[INFO] [info] Cleaning datadir [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-cli/target/scoverage-data]
[INFO] [info] Beginning coverage instrumentation
[INFO] [info] Instrumentation completed [1468 statements]
[INFO] [info] Wrote instrumentation file [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-cli/target/scoverage-data/scoverage.coverage.xml]
[INFO] [info] Will write measurement data to [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-cli/target/scoverage-data]
[WARNING] warning: there was one deprecation warning; re-run with -deprecation for details
[WARNING] one warning found
[INFO] prepare-compile in 0 s
[INFO] compile in 7 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-cli-spark2_2.11 ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 1 source file to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-cli/target/2.11.12/scoverage-classes
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:post-compile (default-cli) @ adam-cli-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-cli-spark2_2.11 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-cli/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-cli-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 15 resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-cli-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-cli-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-cli-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-cli-spark2_2.11 ---
Discovery starting.
Discovery completed in 194 milliseconds.
Run starting. Expected test count is: 44
TransformFeaturesSuite:
2020-10-19 19:13:43 WARN  Utils:66 - Your hostname, amp-jenkins-staging-worker-02 resolves to a loopback address: 127.0.1.1; using 192.168.10.32 instead (on interface eno1)
2020-10-19 19:13:43 WARN  Utils:66 - Set SPARK_LOCAL_IP if you need to bind to another address
2020-10-19 19:13:43 WARN  NativeCodeLoader:62 - Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
- can convert a simple BED file
TransformVariantsSuite:
- save a file sorted by contig index
- save a lexicographically sorted file
ViewSuite:
- -f 0 -F 0 is a no-op
- no -f or -F args is a no-op
- -f 4: only unmapped reads
- -F 4: only mapped reads
- -f 4 -F 8: unmapped reads with mapped mates
- -f 12: unmapped reads with unmapped mates
- -g 12: reads that are unmapped or whose mate is unmapped
- -F 12: mapped reads with mapped mates
- -g 36: unmapped reads or reads with mate on negative strand
- -F 36: unmapped reads or reads with mate on negative strand
TransformFragmentsSuite:
- load queryname sorted sam and save as parquet
- cannot sort if not saving as sam
2020-10-19 19:13:55 WARN  TransformFragments:190 - If loading and saving as alignments, consider using TransformAlignments instead
- load reads as sam and save them sorted
- bin quality scores on reads
TransformGenotypesSuite:
- save a file sorted by contig index
- save a lexicographically sorted file
- transform VCF without nested annotations
- transform VCF with nested annotations
AboutSuite:
- template variables have been replaced
- templated values are not empty
CoverageSuite:
- correctly calculates coverage from small sam file
MergeShardsSuite:
- merge shards from unordered sam to unordered sam
- unordered sam to ordered sam
- merge sharded bam
- merge sharded cram
TransformAlignmentsSuite:
- unordered sam to unordered sam
- unordered sam to ordered sam
- unordered sam, to adam, to sam
- unordered sam, to adam, to ordered sam
- put quality scores into bins
- run region predicate
ADAMMainSuite:
- default command groups is non empty
- module provides default command groups
- inject default command groups when called via main
- command groups is empty when called via apply
- single command group
- add new command group to default command groups
- module restores default command groups when called via apply
- custom module with single command group
- custom module with new command group added to default command groups
Adam2FastqSuite:
2020-10-19 19:14:06 WARN  RDDBoundAlignmentDataset:190 - Found 16 read names that don't occur exactly twice:
	1x:	16

Samples:
	SRR062634.16445865
	SRR062634.9119161
	SRR062634.17190076
	SRR062634.17969132
	SRR062634.7301099
	SRR062634.2087100
	SRR062634.20911784
	SRR062634.16769670
	SRR062634.18958430
	SRR062634.12099057
	SRR062634.12606172
	SRR062634.14985224
	SRR062634.10448889
	SRR062634.4789722
	SRR062634.3203184
	SRR062634.17698657
- convert SAM to paired FASTQ
Run completed in 24 seconds, 999 milliseconds.
Total number of tests run: 44
Suites: completed 12, aborted 0
Tests: succeeded 44, failed 0, canceled 0, ignored 0, pending 0
All tests passed.
[INFO] 
[INFO] <<< scoverage-maven-plugin:1.1.1:report (default-cli) < [scoverage]test @ adam-cli-spark2_2.11 <<<
[INFO] 
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:report (default-cli) @ adam-cli-spark2_2.11 ---
[INFO] [scoverage] Generating cobertura XML report...
[INFO] [scoverage] Generating scoverage XML report...
[INFO] [scoverage] Generating scoverage HTML report...
[INFO] 
[INFO] -----------< org.bdgenomics.adam:adam-assembly-spark2_2.11 >------------
[INFO] Building ADAM_2.11: Assembly 0.33.0-SNAPSHOT                       [7/7]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-assembly-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-assembly-spark2_2.11 ---
[INFO] 
[INFO] --- git-commit-id-plugin:2.2.2:revision (default) @ adam-assembly-spark2_2.11 ---
[INFO] 
[INFO] --- templating-maven-plugin:1.0.0:filter-sources (filter-src) @ adam-assembly-spark2_2.11 ---
[INFO] Request to add '/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-assembly/src/main/java-templates' folder. Not added since it does not exist.
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-assembly-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-assembly/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-assembly-spark2_2.11 ---
[INFO] Modified 0 of 1 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-assembly-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-assembly/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-assembly-spark2_2.11 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-assembly/src/main/scala:-1: info: compiling
[INFO] Compiling 1 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-assembly/target/2.11.12/classes at 1603160048982
[INFO] prepare-compile in 0 s
[INFO] compile in 1 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-assembly-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-assembly-spark2_2.11 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-assembly/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-assembly-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-assembly/src/test/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-assembly-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-assembly-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-assembly-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] >>> scoverage-maven-plugin:1.1.1:report (default-cli) > [scoverage]test @ adam-assembly-spark2_2.11 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-assembly-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-assembly-spark2_2.11 ---
[INFO] 
[INFO] --- git-commit-id-plugin:2.2.2:revision (default) @ adam-assembly-spark2_2.11 ---
[INFO] 
[INFO] --- templating-maven-plugin:1.0.0:filter-sources (filter-src) @ adam-assembly-spark2_2.11 ---
[INFO] Request to add '/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-assembly/src/main/java-templates' folder. Not added since it does not exist.
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-assembly-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-assembly/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-assembly-spark2_2.11 ---
[INFO] Modified 0 of 1 .scala files
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:pre-compile (default-cli) @ adam-assembly-spark2_2.11 ---
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-assembly-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-assembly/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-assembly-spark2_2.11 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-assembly/src/main/scala:-1: info: compiling
[INFO] Compiling 1 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-assembly/target/2.11.12/scoverage-classes at 1603160051232
[INFO] [info] Cleaning datadir [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-assembly/target/scoverage-data]
[INFO] [info] Beginning coverage instrumentation
[INFO] [info] Instrumentation completed [0 statements]
[INFO] [info] Wrote instrumentation file [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-assembly/target/scoverage-data/scoverage.coverage.xml]
[INFO] [info] Will write measurement data to [/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-assembly/target/scoverage-data]
[INFO] prepare-compile in 0 s
[INFO] compile in 1 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-assembly-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:post-compile (default-cli) @ adam-assembly-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-assembly-spark2_2.11 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-assembly/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-assembly-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-assembly/src/test/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-assembly-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-assembly-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-assembly-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] <<< scoverage-maven-plugin:1.1.1:report (default-cli) < [scoverage]test @ adam-assembly-spark2_2.11 <<<
[INFO] 
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:report (default-cli) @ adam-assembly-spark2_2.11 ---
[INFO] [scoverage] Generating cobertura XML report...
[INFO] [scoverage] Generating scoverage XML report...
[INFO] [scoverage] Generating scoverage HTML report...
[INFO] [scoverage] Generating aggregated cobertura XML report...
[INFO] [scoverage] Generating aggregated scoverage XML report...
[INFO] [scoverage] Generating aggregated scoverage HTML report...
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary for ADAM_2.11 0.33.0-SNAPSHOT:
[INFO] 
[INFO] ADAM_2.11 .......................................... SUCCESS [ 10.136 s]
[INFO] ADAM_2.11: Shader workaround ....................... SUCCESS [  4.693 s]
[INFO] ADAM_2.11: Avro-to-Dataset codegen utils ........... SUCCESS [  8.795 s]
[INFO] ADAM_2.11: Core .................................... SUCCESS [14:56 min]
[INFO] ADAM_2.11: APIs for Java, Python ................... SUCCESS [ 46.598 s]
[INFO] ADAM_2.11: CLI ..................................... SUCCESS [01:14 min]
[INFO] ADAM_2.11: Assembly ................................ SUCCESS [  9.796 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESS
[INFO] ------------------------------------------------------------------------
[INFO] Total time:  17:31 min
[INFO] Finished at: 2020-10-19T19:14:18-07:00
[INFO] ------------------------------------------------------------------------

# if those pass, build the distribution package
mvn -U \
    -P distribution \
    package \
    -DskipTests \
    -Dhadoop.version=${HADOOP_VERSION} \
    -DargLine=${ADAM_MVN_TMP_DIR}
+ mvn -U -P distribution package -DskipTests -Dhadoop.version=2.7.5 -DargLine=/tmp/adamTestMvnp6vi9tr
Java HotSpot(TM) 64-Bit Server VM warning: ignoring option MaxPermSize=1g; support was removed in 8.0
[INFO] Scanning for projects...
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Build Order:
[INFO] 
[INFO] ADAM_2.11                                                          [pom]
[INFO] ADAM_2.11: Shader workaround                                       [jar]
[INFO] ADAM_2.11: Avro-to-Dataset codegen utils                           [jar]
[INFO] ADAM_2.11: Core                                                    [jar]
[INFO] ADAM_2.11: APIs for Java, Python                                   [jar]
[INFO] ADAM_2.11: CLI                                                     [jar]
[INFO] ADAM_2.11: Assembly                                                [jar]
[INFO] ADAM_2.11: Distribution                                            [pom]
[INFO] 
[INFO] ------------< org.bdgenomics.adam:adam-parent-spark2_2.11 >-------------
[INFO] Building ADAM_2.11 0.33.0-SNAPSHOT                                 [1/8]
[INFO] --------------------------------[ pom ]---------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-parent-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-parent-spark2_2.11 ---
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-parent-spark2_2.11 ---
[INFO] Modified 0 of 244 .scala files
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-parent-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-parent-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-source-plugin:3.0.1:jar-no-fork (attach-sources) @ adam-parent-spark2_2.11 ---
[INFO] 
[INFO] --- maven-javadoc-plugin:3.1.0:jar (attach-javadoc) @ adam-parent-spark2_2.11 ---
[INFO] 
[INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ adam-parent-spark2_2.11 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-parent-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-parent-spark2_2.11 ---
[INFO] 
[INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ adam-parent-spark2_2.11 <<<
[INFO] 
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ adam-parent-spark2_2.11 ---
[INFO] No source files found
[INFO] 
[INFO] -------------< org.bdgenomics.adam:adam-shade-spark2_2.11 >-------------
[INFO] Building ADAM_2.11: Shader workaround 0.33.0-SNAPSHOT              [2/8]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-shade-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-shade-spark2_2.11 ---
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-shade-spark2_2.11 ---
[INFO] Modified 0 of 0 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-shade-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-shade/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-shade-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-shade-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- plexus-component-metadata:1.5.5:generate-metadata (default) @ adam-shade-spark2_2.11 ---
[INFO] Discovered 1 component descriptors(s)
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-shade-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-shade/src/test/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-shade-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-shade-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-shade-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ adam-shade-spark2_2.11 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-shade/target/adam-shade-spark2_2.11-0.33.0-SNAPSHOT.jar
[INFO] 
[INFO] --- maven-source-plugin:3.0.1:jar-no-fork (attach-sources) @ adam-shade-spark2_2.11 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-shade/target/adam-shade-spark2_2.11-0.33.0-SNAPSHOT-sources.jar
[INFO] 
[INFO] --- maven-javadoc-plugin:3.1.0:jar (attach-javadoc) @ adam-shade-spark2_2.11 ---
[INFO] 
Loading source files for package org.bdgenomics.adam.shade...
Constructing Javadoc information...
Standard Doclet version 1.8.0_191
Building tree for all the packages and classes...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-shade/target/apidocs/org/bdgenomics/adam/shade/ParquetAvroWorkaroundShader.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-shade/target/apidocs/org/bdgenomics/adam/shade/package-frame.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-shade/target/apidocs/org/bdgenomics/adam/shade/package-summary.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-shade/target/apidocs/org/bdgenomics/adam/shade/package-tree.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-shade/target/apidocs/constant-values.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-shade/target/apidocs/org/bdgenomics/adam/shade/class-use/ParquetAvroWorkaroundShader.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-shade/target/apidocs/org/bdgenomics/adam/shade/package-use.html...
Building index for all the packages and classes...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-shade/target/apidocs/overview-tree.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-shade/target/apidocs/index-all.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-shade/target/apidocs/deprecated-list.html...
Building index for all classes...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-shade/target/apidocs/allclasses-frame.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-shade/target/apidocs/allclasses-noframe.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-shade/target/apidocs/index.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-shade/target/apidocs/help-doc.html...
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-shade/target/adam-shade-spark2_2.11-0.33.0-SNAPSHOT-javadoc.jar
[INFO] 
[INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ adam-shade-spark2_2.11 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-shade-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-shade-spark2_2.11 ---
[INFO] 
[INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ adam-shade-spark2_2.11 <<<
[INFO] 
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ adam-shade-spark2_2.11 ---
model contains 6 documentable templates
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-shade/target/adam-shade-spark2_2.11-0.33.0-SNAPSHOT-javadoc.jar
[INFO] 
[INFO] ------------< org.bdgenomics.adam:adam-codegen-spark2_2.11 >------------
[INFO] Building ADAM_2.11: Avro-to-Dataset codegen utils 0.33.0-SNAPSHOT  [3/8]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-codegen-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-codegen-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-codegen-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-codegen/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-codegen-spark2_2.11 ---
[INFO] Modified 0 of 4 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-codegen-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-codegen/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-codegen-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-codegen-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-codegen-spark2_2.11 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-codegen/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-codegen-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-codegen/src/test/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-codegen-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-codegen-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-codegen-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-codegen-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ adam-codegen-spark2_2.11 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-codegen/target/adam-codegen-spark2_2.11-0.33.0-SNAPSHOT.jar
[INFO] 
[INFO] --- maven-source-plugin:3.0.1:jar-no-fork (attach-sources) @ adam-codegen-spark2_2.11 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-codegen/target/adam-codegen-spark2_2.11-0.33.0-SNAPSHOT-sources.jar
[INFO] 
[INFO] --- maven-javadoc-plugin:3.1.0:jar (attach-javadoc) @ adam-codegen-spark2_2.11 ---
[INFO] 
[INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ adam-codegen-spark2_2.11 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-codegen-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-codegen-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-codegen-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-codegen/src/main/scala added.
[INFO] 
[INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ adam-codegen-spark2_2.11 <<<
[INFO] 
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ adam-codegen-spark2_2.11 ---
model contains 11 documentable templates
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-codegen/target/adam-codegen-spark2_2.11-0.33.0-SNAPSHOT-javadoc.jar
[INFO] 
[INFO] -------------< org.bdgenomics.adam:adam-core-spark2_2.11 >--------------
[INFO] Building ADAM_2.11: Core 0.33.0-SNAPSHOT                           [4/8]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-core-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-core-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-core-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/main/scala added.
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/target/generated-sources/src/main/scala added.
[INFO] 
[INFO] --- exec-maven-plugin:1.5.0:java (generate-scala-products) @ adam-core-spark2_2.11 ---
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] 
[INFO] --- exec-maven-plugin:1.5.0:java (generate-scala-projection-fields) @ adam-core-spark2_2.11 ---
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-core-spark2_2.11 ---
[INFO] Modified 2 of 204 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-core-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-core-spark2_2.11 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/main/java:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/main/scala:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/target/generated-sources/src/main/scala:-1: info: compiling
[INFO] Compiling 140 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/target/2.11.12/classes at 1603160080084
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicDataset.scala:3091: warning: no valid targets for annotation on value uTag - it is discarded unused. You may specify targets with meta-annotations, e.g. @(transient @getter)
[WARNING]   @transient val uTag: TypeTag[U]
[WARNING]    ^
[WARNING] warning: there were 53 deprecation warnings; re-run with -deprecation for details
[WARNING] warning: there were 5 feature warnings; re-run with -feature for details
[WARNING] three warnings found
[INFO] prepare-compile in 0 s
[INFO] compile in 30 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-core-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-core-spark2_2.11 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-core-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 152 resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-core-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-core-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-core-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-core-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ adam-core-spark2_2.11 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/target/adam-core-spark2_2.11-0.33.0-SNAPSHOT.jar
[INFO] 
[INFO] --- maven-source-plugin:3.0.1:jar-no-fork (attach-sources) @ adam-core-spark2_2.11 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/target/adam-core-spark2_2.11-0.33.0-SNAPSHOT-sources.jar
[INFO] 
[INFO] --- maven-javadoc-plugin:3.1.0:jar (attach-javadoc) @ adam-core-spark2_2.11 ---
[INFO] The goal 'org.apache.maven.plugins:maven-javadoc-plugin:3.1.0:javadoc' has not been previously called for the module: 'org.bdgenomics.adam:adam-codegen-spark2_2.11:jar:0.33.0-SNAPSHOT'. Trying to invoke it...
Java HotSpot(TM) 64-Bit Server VM warning: ignoring option MaxPermSize=1g; support was removed in 8.0
[WARNING] Creating fake javadoc directory to prevent repeated invocations: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-codegen/target/apidocs
[ERROR] Error fetching link: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-codegen/target/apidocs. Ignored it.
[INFO] 
Loading source files for package org.apache.parquet.avro...
Loading source files for package org.bdgenomics.adam.io...
Constructing Javadoc information...
Standard Doclet version 1.8.0_191
Building tree for all the packages and classes...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/target/apidocs/org/apache/parquet/avro/AvroSchemaConverter.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/FastqInputFormat.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/FastqRecordReader.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/InterleavedFastqInputFormat.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/SingleFastqInputFormat.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/target/apidocs/overview-frame.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/target/apidocs/org/apache/parquet/avro/package-frame.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/target/apidocs/org/apache/parquet/avro/package-summary.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/target/apidocs/org/apache/parquet/avro/package-tree.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/package-frame.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/package-summary.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/package-tree.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/target/apidocs/constant-values.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/target/apidocs/org/apache/parquet/avro/class-use/AvroSchemaConverter.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/class-use/SingleFastqInputFormat.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/class-use/FastqRecordReader.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/class-use/FastqInputFormat.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/class-use/InterleavedFastqInputFormat.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/target/apidocs/org/apache/parquet/avro/package-use.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/package-use.html...
Building index for all the packages and classes...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/target/apidocs/overview-tree.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/target/apidocs/index-all.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/target/apidocs/deprecated-list.html...
Building index for all classes...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/target/apidocs/allclasses-frame.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/target/apidocs/allclasses-noframe.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/target/apidocs/index.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/target/apidocs/overview-summary.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/target/apidocs/help-doc.html...
6 warnings
[WARNING] Javadoc Warnings
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/main/java/org/bdgenomics/adam/io/FastqRecordReader.java:235: warning: no @param for codec
[WARNING] protected final int positionAtFirstRecord(final FSDataInputStream stream,
[WARNING] ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/main/java/org/bdgenomics/adam/io/FastqRecordReader.java:235: warning: no @return
[WARNING] protected final int positionAtFirstRecord(final FSDataInputStream stream,
[WARNING] ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/main/java/org/bdgenomics/adam/io/FastqRecordReader.java:235: warning: no @throws for java.io.IOException
[WARNING] protected final int positionAtFirstRecord(final FSDataInputStream stream,
[WARNING] ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/main/java/org/bdgenomics/adam/io/FastqRecordReader.java:389: warning: no @throws for java.io.IOException
[WARNING] protected final boolean lowLevelFastqRead(final Text readName, final Text value)
[WARNING] ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/main/java/org/bdgenomics/adam/io/FastqRecordReader.java:431: warning: no @throws for java.io.IOException
[WARNING] abstract protected boolean next(Text value) throws IOException;
[WARNING] ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/main/java/org/bdgenomics/adam/io/FastqRecordReader.java:154: warning: no @throws for java.io.IOException
[WARNING] protected FastqRecordReader(final Configuration conf,
[WARNING] ^
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/target/adam-core-spark2_2.11-0.33.0-SNAPSHOT-javadoc.jar
[INFO] 
[INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ adam-core-spark2_2.11 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-core-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-core-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-core-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/main/scala added.
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/target/generated-sources/src/main/scala added.
[INFO] 
[INFO] --- exec-maven-plugin:1.5.0:java (generate-scala-products) @ adam-core-spark2_2.11 ---
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] 
[INFO] --- exec-maven-plugin:1.5.0:java (generate-scala-projection-fields) @ adam-core-spark2_2.11 ---
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] 
[INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ adam-core-spark2_2.11 <<<
[INFO] 
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ adam-core-spark2_2.11 ---
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverters.scala:274: warning: discarding unmoored doc comment
    /**
    ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentDataset.scala:840: warning: Octal escape literals are deprecated, use \u0001 instead.
      binaryCodec.writeBytes("BAM\001".getBytes())
                                 ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rich/RichCigar.scala:43: warning: discarding unmoored doc comment
    /**
    ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicDataset.scala:3091: warning: no valid targets for annotation on value uTag - it is discarded unused. You may specify targets with meta-annotations, e.g. @(transient @getter)
  @transient val uTag: TypeTag[U]
   ^
warning: there were 5 feature warnings; re-run with -feature for details
model contains 283 documentable templates
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/util/AttributeUtils.scala:70: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/projections/Projection.scala:45: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala:1810: warning: Could not find any member to link for "FileNotFoundException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala:1839: warning: Could not find any member to link for "FileNotFoundException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala:1859: warning: Could not find any member to link for "FileNotFoundException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicPartitioners.scala:75: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicPartitioners.scala:178: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala:474: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala:3464: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala:429: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicDataset.scala:747: warning: Variable x undefined in comment for method pipe in trait GenomicDataset
   * Files are substituted in to the command with a $x syntax. E.g., to invoke
                                                     ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicDataset.scala:748: warning: Variable 0 undefined in comment for method pipe in trait GenomicDataset
   * a command that uses the first file from the files Seq, use $0. To access
                                                                 ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicDataset.scala:749: warning: Variable root undefined in comment for method pipe in trait GenomicDataset
   * the path to the directory where the files are copied, use $root.
                                                                ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/models/ReadGroupDictionary.scala:47: warning: Could not find any member to link for "IllegalArgumentException".
/**
^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/models/Alphabet.scala:44: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala:258: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala:242: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala:444: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala:354: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
24 warnings found
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/target/adam-core-spark2_2.11-0.33.0-SNAPSHOT-javadoc.jar
[INFO] 
[INFO] --- maven-jar-plugin:3.2.0:test-jar (default) @ adam-core-spark2_2.11 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-core/target/adam-core-spark2_2.11-0.33.0-SNAPSHOT-tests.jar
[INFO] 
[INFO] -------------< org.bdgenomics.adam:adam-apis-spark2_2.11 >--------------
[INFO] Building ADAM_2.11: APIs for Java, Python 0.33.0-SNAPSHOT          [5/8]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-apis-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-apis-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-apis-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-apis/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-apis-spark2_2.11 ---
[INFO] Modified 0 of 5 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-apis-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-apis/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-apis-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-apis-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-apis-spark2_2.11 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-apis/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-apis-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 2 resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-apis-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-apis-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-apis-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-apis-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ adam-apis-spark2_2.11 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-apis/target/adam-apis-spark2_2.11-0.33.0-SNAPSHOT.jar
[INFO] 
[INFO] --- maven-source-plugin:3.0.1:jar-no-fork (attach-sources) @ adam-apis-spark2_2.11 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-apis/target/adam-apis-spark2_2.11-0.33.0-SNAPSHOT-sources.jar
[INFO] 
[INFO] --- maven-javadoc-plugin:3.1.0:jar (attach-javadoc) @ adam-apis-spark2_2.11 ---
[INFO] 
[INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ adam-apis-spark2_2.11 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-apis-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-apis-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-apis-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-apis/src/main/scala added.
[INFO] 
[INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ adam-apis-spark2_2.11 <<<
[INFO] 
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ adam-apis-spark2_2.11 ---
warning: there were two feature warnings; re-run with -feature for details
model contains 192 documentable templates
one warning found
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-apis/target/adam-apis-spark2_2.11-0.33.0-SNAPSHOT-javadoc.jar
[INFO] 
[INFO] --- maven-jar-plugin:3.2.0:test-jar (default) @ adam-apis-spark2_2.11 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-apis/target/adam-apis-spark2_2.11-0.33.0-SNAPSHOT-tests.jar
[INFO] 
[INFO] --------------< org.bdgenomics.adam:adam-cli-spark2_2.11 >--------------
[INFO] Building ADAM_2.11: CLI 0.33.0-SNAPSHOT                            [6/8]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-cli-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-cli-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:timestamp-property (timestamp-property) @ adam-cli-spark2_2.11 ---
[INFO] 
[INFO] --- git-commit-id-plugin:2.2.2:revision (default) @ adam-cli-spark2_2.11 ---
[INFO] 
[INFO] --- templating-maven-plugin:1.0.0:filter-sources (filter-src) @ adam-cli-spark2_2.11 ---
[INFO] Coping files with filtering to temporary directory.
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 1 resource
[INFO] No files needs to be copied to output directory. Up to date: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-cli/target/generated-sources/java-templates
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-cli/target/generated-sources/java-templates added.
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-cli-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-cli/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-cli-spark2_2.11 ---
[INFO] Modified 0 of 29 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-cli-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-cli/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-cli-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-cli-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-cli-spark2_2.11 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-cli/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-cli-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 15 resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-cli-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-cli-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-cli-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-cli-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ adam-cli-spark2_2.11 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-cli/target/adam-cli-spark2_2.11-0.33.0-SNAPSHOT.jar
[INFO] 
[INFO] --- maven-source-plugin:3.0.1:jar-no-fork (attach-sources) @ adam-cli-spark2_2.11 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-cli/target/adam-cli-spark2_2.11-0.33.0-SNAPSHOT-sources.jar
[INFO] 
[INFO] --- maven-javadoc-plugin:3.1.0:jar (attach-javadoc) @ adam-cli-spark2_2.11 ---
[INFO] The goal 'org.apache.maven.plugins:maven-javadoc-plugin:3.1.0:javadoc' has not been previously called for the module: 'org.bdgenomics.adam:adam-apis-spark2_2.11:jar:0.33.0-SNAPSHOT'. Trying to invoke it...
Java HotSpot(TM) 64-Bit Server VM warning: ignoring option MaxPermSize=1g; support was removed in 8.0
[WARNING] Creating fake javadoc directory to prevent repeated invocations: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-apis/target/apidocs
[ERROR] Error fetching link: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-apis/target/apidocs. Ignored it.
[INFO] 
Loading source files for package org.bdgenomics.adam.cli...
Constructing Javadoc information...
Standard Doclet version 1.8.0_191
Building tree for all the packages and classes...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-cli/target/apidocs/org/bdgenomics/adam/cli/About.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-cli/target/apidocs/org/bdgenomics/adam/cli/package-frame.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-cli/target/apidocs/org/bdgenomics/adam/cli/package-summary.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-cli/target/apidocs/org/bdgenomics/adam/cli/package-tree.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-cli/target/apidocs/constant-values.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-cli/target/apidocs/org/bdgenomics/adam/cli/class-use/About.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-cli/target/apidocs/org/bdgenomics/adam/cli/package-use.html...
Building index for all the packages and classes...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-cli/target/apidocs/overview-tree.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-cli/target/apidocs/index-all.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-cli/target/apidocs/deprecated-list.html...
Building index for all classes...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-cli/target/apidocs/allclasses-frame.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-cli/target/apidocs/allclasses-noframe.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-cli/target/apidocs/index.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-cli/target/apidocs/help-doc.html...
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-cli/target/adam-cli-spark2_2.11-0.33.0-SNAPSHOT-javadoc.jar
[INFO] 
[INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ adam-cli-spark2_2.11 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-cli-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-cli-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:timestamp-property (timestamp-property) @ adam-cli-spark2_2.11 ---
[INFO] 
[INFO] --- git-commit-id-plugin:2.2.2:revision (default) @ adam-cli-spark2_2.11 ---
[INFO] 
[INFO] --- templating-maven-plugin:1.0.0:filter-sources (filter-src) @ adam-cli-spark2_2.11 ---
[INFO] Coping files with filtering to temporary directory.
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 1 resource
[INFO] No files needs to be copied to output directory. Up to date: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-cli/target/generated-sources/java-templates
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-cli/target/generated-sources/java-templates added.
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-cli-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-cli/src/main/scala added.
[INFO] 
[INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ adam-cli-spark2_2.11 <<<
[INFO] 
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ adam-cli-spark2_2.11 ---
model contains 55 documentable templates
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-cli/target/adam-cli-spark2_2.11-0.33.0-SNAPSHOT-javadoc.jar
[INFO] 
[INFO] -----------< org.bdgenomics.adam:adam-assembly-spark2_2.11 >------------
[INFO] Building ADAM_2.11: Assembly 0.33.0-SNAPSHOT                       [7/8]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-assembly-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-assembly-spark2_2.11 ---
[INFO] 
[INFO] --- git-commit-id-plugin:2.2.2:revision (default) @ adam-assembly-spark2_2.11 ---
[INFO] 
[INFO] --- templating-maven-plugin:1.0.0:filter-sources (filter-src) @ adam-assembly-spark2_2.11 ---
[INFO] Request to add '/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-assembly/src/main/java-templates' folder. Not added since it does not exist.
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-assembly-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-assembly/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-assembly-spark2_2.11 ---
[INFO] Modified 0 of 1 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-assembly-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-assembly/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-assembly-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-assembly-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-assembly-spark2_2.11 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-assembly/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-assembly-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-assembly/src/test/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-assembly-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-assembly-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-assembly-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ adam-assembly-spark2_2.11 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-assembly/target/adam-assembly-spark2_2.11-0.33.0-SNAPSHOT.jar
[INFO] 
[INFO] --- maven-source-plugin:3.0.1:jar-no-fork (attach-sources) @ adam-assembly-spark2_2.11 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-assembly/target/adam-assembly-spark2_2.11-0.33.0-SNAPSHOT-sources.jar
[INFO] 
[INFO] --- maven-javadoc-plugin:3.1.0:jar (attach-javadoc) @ adam-assembly-spark2_2.11 ---
[INFO] 
[INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ adam-assembly-spark2_2.11 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-assembly-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-assembly-spark2_2.11 ---
[INFO] 
[INFO] --- git-commit-id-plugin:2.2.2:revision (default) @ adam-assembly-spark2_2.11 ---
[INFO] 
[INFO] --- templating-maven-plugin:1.0.0:filter-sources (filter-src) @ adam-assembly-spark2_2.11 ---
[INFO] Request to add '/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-assembly/src/main/java-templates' folder. Not added since it does not exist.
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-assembly-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-assembly/src/main/scala added.
[INFO] 
[INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ adam-assembly-spark2_2.11 <<<
[INFO] 
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ adam-assembly-spark2_2.11 ---
model contains 6 documentable templates
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-assembly/target/adam-assembly-spark2_2.11-0.33.0-SNAPSHOT-javadoc.jar
[INFO] 
[INFO] --- maven-shade-plugin:3.2.0:shade (default) @ adam-assembly-spark2_2.11 ---
[INFO] Including org.bdgenomics.adam:adam-cli-spark2_2.11:jar:0.33.0-SNAPSHOT in the shaded jar.
[INFO] Including org.bdgenomics.utils:utils-misc-spark2_2.11:jar:0.3.0 in the shaded jar.
[INFO] Including org.scala-lang:scala-library:jar:2.11.12 in the shaded jar.
[INFO] Including org.bdgenomics.utils:utils-io-spark2_2.11:jar:0.3.0 in the shaded jar.
[INFO] Including org.apache.httpcomponents:httpclient:jar:4.5.7 in the shaded jar.
[INFO] Including org.apache.httpcomponents:httpcore:jar:4.4.11 in the shaded jar.
[INFO] Including commons-logging:commons-logging:jar:1.2 in the shaded jar.
[INFO] Including commons-codec:commons-codec:jar:1.11 in the shaded jar.
[INFO] Including org.bdgenomics.utils:utils-cli-spark2_2.11:jar:0.3.0 in the shaded jar.
[INFO] Including org.clapper:grizzled-slf4j_2.11:jar:1.3.4 in the shaded jar.
[INFO] Including org.slf4j:slf4j-api:jar:1.7.30 in the shaded jar.
[INFO] Including org.apache.parquet:parquet-avro:jar:1.10.1 in the shaded jar.
[INFO] Including org.apache.parquet:parquet-column:jar:1.10.1 in the shaded jar.
[INFO] Including org.apache.parquet:parquet-common:jar:1.10.1 in the shaded jar.
[INFO] Including org.apache.parquet:parquet-encoding:jar:1.10.1 in the shaded jar.
[INFO] Including org.apache.parquet:parquet-hadoop:jar:1.10.1 in the shaded jar.
[INFO] Including org.apache.parquet:parquet-jackson:jar:1.10.1 in the shaded jar.
[INFO] Including commons-pool:commons-pool:jar:1.6 in the shaded jar.
[INFO] Including org.apache.parquet:parquet-format:jar:2.4.0 in the shaded jar.
[INFO] Including org.bdgenomics.bdg-formats:bdg-formats:jar:0.15.0 in the shaded jar.
[INFO] Including org.apache.avro:avro:jar:1.8.2 in the shaded jar.
[INFO] Including org.codehaus.jackson:jackson-core-asl:jar:1.9.13 in the shaded jar.
[INFO] Including org.codehaus.jackson:jackson-mapper-asl:jar:1.9.13 in the shaded jar.
[INFO] Including com.thoughtworks.paranamer:paranamer:jar:2.8 in the shaded jar.
[INFO] Including org.xerial.snappy:snappy-java:jar:1.1.1.3 in the shaded jar.
[INFO] Including org.apache.commons:commons-compress:jar:1.8.1 in the shaded jar.
[INFO] Including org.tukaani:xz:jar:1.5 in the shaded jar.
[INFO] Including org.bdgenomics.adam:adam-core-spark2_2.11:jar:0.33.0-SNAPSHOT in the shaded jar.
[INFO] Including org.bdgenomics.utils:utils-intervalrdd-spark2_2.11:jar:0.3.0 in the shaded jar.
[INFO] Including com.esotericsoftware.kryo:kryo:jar:2.24.0 in the shaded jar.
[INFO] Including com.esotericsoftware.minlog:minlog:jar:1.2 in the shaded jar.
[INFO] Including org.objenesis:objenesis:jar:2.1 in the shaded jar.
[INFO] Including commons-io:commons-io:jar:2.6 in the shaded jar.
[INFO] Including it.unimi.dsi:fastutil:jar:6.6.5 in the shaded jar.
[INFO] Including org.seqdoop:hadoop-bam:jar:7.9.2 in the shaded jar.
[INFO] Including com.github.jsr203hadoop:jsr203hadoop:jar:1.0.3 in the shaded jar.
[INFO] Including com.github.samtools:htsjdk:jar:2.19.0 in the shaded jar.
[INFO] Including org.apache.commons:commons-jexl:jar:2.1.1 in the shaded jar.
[INFO] Including gov.nih.nlm.ncbi:ngs-java:jar:2.9.0 in the shaded jar.
[INFO] Including com.google.guava:guava:jar:27.0-jre in the shaded jar.
[INFO] Including com.google.guava:failureaccess:jar:1.0 in the shaded jar.
[INFO] Including com.google.guava:listenablefuture:jar:9999.0-empty-to-avoid-conflict-with-guava in the shaded jar.
[INFO] Including org.checkerframework:checker-qual:jar:2.5.2 in the shaded jar.
[INFO] Including com.google.errorprone:error_prone_annotations:jar:2.2.0 in the shaded jar.
[INFO] Including com.google.j2objc:j2objc-annotations:jar:1.1 in the shaded jar.
[INFO] Including org.codehaus.mojo:animal-sniffer-annotations:jar:1.17 in the shaded jar.
[INFO] Including org.bdgenomics.adam:adam-codegen-spark2_2.11:jar:0.33.0-SNAPSHOT in the shaded jar.
[INFO] Including org.bdgenomics.adam:adam-apis-spark2_2.11:jar:0.33.0-SNAPSHOT in the shaded jar.
[INFO] Including args4j:args4j:jar:2.33 in the shaded jar.
[INFO] Including net.codingwell:scala-guice_2.11:jar:4.2.1 in the shaded jar.
[INFO] Including com.google.inject:guice:jar:4.2.0 in the shaded jar.
[INFO] Including javax.inject:javax.inject:jar:1 in the shaded jar.
[INFO] Including aopalliance:aopalliance:jar:1.0 in the shaded jar.
[INFO] Including org.scala-lang:scala-reflect:jar:2.11.12 in the shaded jar.
[INFO] Including com.google.code.findbugs:jsr305:jar:1.3.9 in the shaded jar.
[WARNING] WORKAROUND:  refusing to add class org/apache/parquet/avro/AvroSchemaConverter$2.class from jar /home/jenkins/.m2/repository/org/apache/parquet/parquet-avro/1.10.1/parquet-avro-1.10.1.jar
[WARNING] WORKAROUND:  refusing to add class org/apache/parquet/avro/AvroSchemaConverter.class from jar /home/jenkins/.m2/repository/org/apache/parquet/parquet-avro/1.10.1/parquet-avro-1.10.1.jar
[WARNING] WORKAROUND:  refusing to add class org/apache/parquet/avro/AvroSchemaConverter$1.class from jar /home/jenkins/.m2/repository/org/apache/parquet/parquet-avro/1.10.1/parquet-avro-1.10.1.jar
[WARNING] guava-27.0-jre.jar, failureaccess-1.0.jar define 2 overlapping classes: 
[WARNING]   - com.google.common.util.concurrent.internal.InternalFutureFailureAccess
[WARNING]   - com.google.common.util.concurrent.internal.InternalFutures
[WARNING] maven-shade-plugin has detected that some class files are
[WARNING] present in two or more JARs. When this happens, only one
[WARNING] single version of the class is copied to the uber jar.
[WARNING] Usually this is not harmful and you can skip these warnings,
[WARNING] otherwise try to manually exclude artifacts based on
[WARNING] mvn dependency:tree -Ddetail=true and the above output.
[WARNING] See http://maven.apache.org/plugins/maven-shade-plugin/
[INFO] Replacing original artifact with shaded artifact.
[INFO] Replacing /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-assembly/target/adam-assembly-spark2_2.11-0.33.0-SNAPSHOT.jar with /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-assembly/target/adam-assembly-spark2_2.11-0.33.0-SNAPSHOT-shaded.jar
[INFO] 
[INFO] ---------< org.bdgenomics.adam:adam-distribution-spark2_2.11 >----------
[INFO] Building ADAM_2.11: Distribution 0.33.0-SNAPSHOT                   [8/8]
[INFO] --------------------------------[ pom ]---------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-distribution-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-distribution-spark2_2.11 ---
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-distribution-spark2_2.11 ---
[INFO] Modified 0 of 0 .scala files
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-distribution-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-distribution-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-source-plugin:3.0.1:jar-no-fork (attach-sources) @ adam-distribution-spark2_2.11 ---
[INFO] 
[INFO] --- maven-javadoc-plugin:3.1.0:jar (attach-javadoc) @ adam-distribution-spark2_2.11 ---
[INFO] 
[INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ adam-distribution-spark2_2.11 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-distribution-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-distribution-spark2_2.11 ---
[INFO] 
[INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ adam-distribution-spark2_2.11 <<<
[INFO] 
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ adam-distribution-spark2_2.11 ---
[INFO] No source files found
[INFO] 
[INFO] --- maven-assembly-plugin:3.2.0:single (default) @ adam-distribution-spark2_2.11 ---
[INFO] Reading assembly descriptor: src/main/assembly/assembly.xml
[INFO] Building tar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-distribution/target/adam-distribution-spark2_2.11-0.33.0-SNAPSHOT-bin.tar.gz
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/smithwaterman/ longer than 100 characters.
[WARNING] Resulting tar file can only be processed successfully by GNU compatible tar commands
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/apache/parquet/avro/AvroSchemaConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/AttributeUtils$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/FileExtensions$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/IndexedFastaFile.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/TextRddWriter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/GenomeFileReader$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ReferenceContigMapSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ParquetLogger$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/SequenceDictionaryReader$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ParquetFileTraversable.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ReferenceContigMap$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/TwoBitFileSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ReferenceContigMap.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/converters/AlignmentConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/converters/VariantContextConverter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/converters/VariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/converters/DefaultHeaderLines$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/io/FastqRecordReader.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/io/SingleFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/io/InterleavedFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/io/FastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantCallingAnnotations$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantAnnotation.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantAnnotation$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantContext$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantCallingAnnotations.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/TranscriptEffect.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/TranscriptEffect$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/ProcessingStep$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/VariantCallingAnnotationsField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/package.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FeatureField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/ReadField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FieldValue.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/SliceField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/TranscriptEffectField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/GenotypeField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FieldEnumeration.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/VariantField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/Projection$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/ReadGroupField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/ReferenceField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/SequenceField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/VariantAnnotationField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/OntologyTermField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/Filter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FieldEnumeration$SchemaVal.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/SampleField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/AlignmentField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FragmentField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/DbxrefField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InnerShuffleRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicPositionPartitioner.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InnerTreeRegionJoinAndGroupByRight.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/AvroReadGroupGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicRegionPartitioner$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicRegionPartitioner.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InFormatterCompanion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenericGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/ADAMVCFOutputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/ParquetUnboundVariantDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VariantDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/DatasetBoundGenotypeDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VariantContextDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VariantContextDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/package.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/GenotypeDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/ParquetUnboundGenotypeDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/DatasetBoundVariantContextDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VCFInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VCFInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/RDDBoundVariantContextDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VariantDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/RDDBoundVariantDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/GenotypeDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/RDDBoundGenotypeDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/DatasetBoundVariantDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VCFOutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/DatasetBoundGenericGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicBroadcast.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InnerTreeRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/NarrowPeakOutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GFF3InFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/package.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GTFInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/FeatureDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/NarrowPeakInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/ParquetUnboundFeatureDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/RDDBoundFeatureDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/BEDOutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GFF3InFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/DatasetBoundCoverageDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GTFInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/BEDInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/CoverageDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/BEDInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/NarrowPeakInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/ParquetUnboundCoverageDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GFF3OutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/CoverageDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GTFOutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/DatasetBoundFeatureDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/FeatureDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/RDDBoundCoverageDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/RightOuterTreeRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InnerShuffleRegionJoinAndGroupByLeft.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/RightOuterShuffleRegionJoinAndGroupByLeft.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/ShuffleRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/AvroGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/DatasetBoundGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenericConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/LeftOuterShuffleRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/FullOuterShuffleRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/MultisampleAvroGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/SequenceDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/RDDBoundSliceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/package.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/DatasetBoundSequenceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/FASTAInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/ParquetUnboundSliceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/DatasetBoundSliceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/SliceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/SliceDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/FASTAInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/SequenceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/ParquetUnboundSequenceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/RDDBoundSequenceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/RDDBoundGenericGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/ReferencePartitioner.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/MultisampleGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/RightOuterTreeRegionJoinAndGroupByRight.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/VictimlessSortedIntervalPartitionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicPositionPartitioner$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/LeftOuterShuffleRegionJoinAndGroupByLeft.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMSAMOutputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMCRAMOutputFormatHeaderLess.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ReferencePositionPairSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ParquetUnboundAlignmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMSAMOutputFormatHeaderLess.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ReadDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AlignmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMBAMOutputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/RDDBoundReadDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/DatasetBoundAlignmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMBAMOutputFormatHeaderLess.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/DatasetBoundReadDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AnySAMOutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/QualityScoreBin$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ReadDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/SAMInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/SAMInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/BAMInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMCRAMOutputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/FASTQInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/FASTQInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AlignmentDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AnySAMInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/QualityScoreBin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/RDDBoundAlignmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/BAMInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AnySAMInFormatterCompanion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/SingleReadBucketSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/IncorrectMDTagException.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ParquetUnboundReadDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/SortedIntervalPartitionJoinWithVictims.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/ADAMSaveAnyArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/Tab5InFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/ParquetUnboundFragmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/FragmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/package.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/Tab6InFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/RDDBoundFragmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/Tab6InFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/InterleavedFASTQInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/Tab5InFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/FragmentDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/DatasetBoundFragmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/InterleavedFASTQInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicDatasetWithLineage.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rich/RichAlignment$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/smithwaterman/package.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/smithwaterman/SmithWaterman.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/smithwaterman/SmithWatermanConstantGapScoring.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/consensus/package.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/consensus/ConsensusGenerator.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/consensus/ConsensusGenerator$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferencePosition$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/OptionalReferenceOrdering.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/TagType$$TypeVal.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferenceRegion$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferencePositionSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/SequenceDictionary.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/SequenceRecord$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReadGroupDictionary.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferenceRegionSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/OptionalPositionOrdering$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/PositionOrdering$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/VariantContext.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/VariantContext$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/SequenceDictionary$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferenceOrdering.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferenceRegion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/SequenceRecord.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/OptionalRegionOrdering$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReadGroupDictionary$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/RegionOrdering$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferencePosition.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/VariantContextSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/package.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/InputStreamWithDecoder.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/AvroSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/ADAMKryoRegistrator.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/WritableSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/javadocs/org/apache/parquet/avro/AvroSchemaConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/javadocs/org/apache/parquet/avro/class-use/AvroSchemaConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/FastqRecordReader.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/SingleFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/InterleavedFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/class-use/FastqRecordReader.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/class-use/SingleFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/class-use/InterleavedFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/class-use/FastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/python/DataFrameConversionWrapper.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToVariantContextsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToAlignmentDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToSequenceDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToCoverageDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToVariantContextDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToReadDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToVariantContextsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToGenotypeDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToSliceDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToFeatureConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/JavaADAMContext$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToFeatureDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToVariantDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToVariantContextsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToFragmentDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/JavaADAMContext.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSlices.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformGenotypes$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformGenotypesArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFeaturesArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformAlignments$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformVariantsArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformGenotypes.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSequences$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformVariants$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountSliceKmers$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFragments$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformAlignmentsArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFragments.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSequencesArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformAlignments.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFragmentsArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/MergeShardsArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformVariants.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountSliceKmers.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSlicesArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountSliceKmersArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountReadKmers$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSequences.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFeatures.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountReadKmersArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSlices$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFeatures$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/repo/adam-assembly-spark2_2.11-0.33.0-SNAPSHOT-javadoc.jar longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/repo/adam-assembly-spark2_2.11-0.33.0-SNAPSHOT-sources.jar longer than 100 characters.
[INFO] Building tar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-distribution/target/adam-distribution-spark2_2.11-0.33.0-SNAPSHOT-bin.tar.bz2
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/smithwaterman/ longer than 100 characters.
[WARNING] Resulting tar file can only be processed successfully by GNU compatible tar commands
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/apache/parquet/avro/AvroSchemaConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/AttributeUtils$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/FileExtensions$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/IndexedFastaFile.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/TextRddWriter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/GenomeFileReader$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ReferenceContigMapSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ParquetLogger$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/SequenceDictionaryReader$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ParquetFileTraversable.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ReferenceContigMap$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/TwoBitFileSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ReferenceContigMap.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/converters/AlignmentConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/converters/VariantContextConverter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/converters/VariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/converters/DefaultHeaderLines$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/io/FastqRecordReader.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/io/SingleFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/io/InterleavedFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/io/FastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantCallingAnnotations$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantAnnotation.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantAnnotation$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantContext$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantCallingAnnotations.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/TranscriptEffect.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/TranscriptEffect$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/ProcessingStep$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/VariantCallingAnnotationsField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/package.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FeatureField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/ReadField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FieldValue.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/SliceField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/TranscriptEffectField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/GenotypeField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FieldEnumeration.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/VariantField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/Projection$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/ReadGroupField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/ReferenceField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/SequenceField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/VariantAnnotationField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/OntologyTermField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/Filter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FieldEnumeration$SchemaVal.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/SampleField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/AlignmentField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FragmentField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/DbxrefField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InnerShuffleRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicPositionPartitioner.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InnerTreeRegionJoinAndGroupByRight.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/AvroReadGroupGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicRegionPartitioner$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicRegionPartitioner.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InFormatterCompanion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenericGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/ADAMVCFOutputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/ParquetUnboundVariantDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VariantDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/DatasetBoundGenotypeDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VariantContextDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VariantContextDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/package.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/GenotypeDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/ParquetUnboundGenotypeDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/DatasetBoundVariantContextDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VCFInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VCFInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/RDDBoundVariantContextDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VariantDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/RDDBoundVariantDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/GenotypeDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/RDDBoundGenotypeDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/DatasetBoundVariantDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VCFOutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/DatasetBoundGenericGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicBroadcast.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InnerTreeRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/NarrowPeakOutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GFF3InFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/package.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GTFInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/FeatureDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/NarrowPeakInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/ParquetUnboundFeatureDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/RDDBoundFeatureDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/BEDOutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GFF3InFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/DatasetBoundCoverageDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GTFInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/BEDInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/CoverageDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/BEDInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/NarrowPeakInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/ParquetUnboundCoverageDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GFF3OutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/CoverageDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GTFOutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/DatasetBoundFeatureDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/FeatureDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/RDDBoundCoverageDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/RightOuterTreeRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InnerShuffleRegionJoinAndGroupByLeft.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/RightOuterShuffleRegionJoinAndGroupByLeft.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/ShuffleRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/AvroGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/DatasetBoundGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenericConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/LeftOuterShuffleRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/FullOuterShuffleRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/MultisampleAvroGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/SequenceDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/RDDBoundSliceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/package.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/DatasetBoundSequenceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/FASTAInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/ParquetUnboundSliceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/DatasetBoundSliceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/SliceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/SliceDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/FASTAInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/SequenceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/ParquetUnboundSequenceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/RDDBoundSequenceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/RDDBoundGenericGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/ReferencePartitioner.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/MultisampleGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/RightOuterTreeRegionJoinAndGroupByRight.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/VictimlessSortedIntervalPartitionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicPositionPartitioner$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/LeftOuterShuffleRegionJoinAndGroupByLeft.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMSAMOutputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMCRAMOutputFormatHeaderLess.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ReferencePositionPairSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ParquetUnboundAlignmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMSAMOutputFormatHeaderLess.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ReadDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AlignmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMBAMOutputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/RDDBoundReadDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/DatasetBoundAlignmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMBAMOutputFormatHeaderLess.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/DatasetBoundReadDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AnySAMOutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/QualityScoreBin$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ReadDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/SAMInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/SAMInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/BAMInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMCRAMOutputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/FASTQInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/FASTQInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AlignmentDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AnySAMInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/QualityScoreBin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/RDDBoundAlignmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/BAMInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AnySAMInFormatterCompanion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/SingleReadBucketSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/IncorrectMDTagException.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ParquetUnboundReadDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/SortedIntervalPartitionJoinWithVictims.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/ADAMSaveAnyArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/Tab5InFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/ParquetUnboundFragmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/FragmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/package.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/Tab6InFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/RDDBoundFragmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/Tab6InFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/InterleavedFASTQInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/Tab5InFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/FragmentDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/DatasetBoundFragmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/InterleavedFASTQInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicDatasetWithLineage.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rich/RichAlignment$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/smithwaterman/package.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/smithwaterman/SmithWaterman.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/smithwaterman/SmithWatermanConstantGapScoring.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/consensus/package.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/consensus/ConsensusGenerator.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/consensus/ConsensusGenerator$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferencePosition$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/OptionalReferenceOrdering.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/TagType$$TypeVal.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferenceRegion$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferencePositionSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/SequenceDictionary.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/SequenceRecord$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReadGroupDictionary.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferenceRegionSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/OptionalPositionOrdering$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/PositionOrdering$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/VariantContext.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/VariantContext$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/SequenceDictionary$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferenceOrdering.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferenceRegion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/SequenceRecord.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/OptionalRegionOrdering$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReadGroupDictionary$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/RegionOrdering$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferencePosition.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/VariantContextSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/package.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/InputStreamWithDecoder.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/AvroSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/ADAMKryoRegistrator.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/WritableSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/javadocs/org/apache/parquet/avro/AvroSchemaConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/javadocs/org/apache/parquet/avro/class-use/AvroSchemaConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/FastqRecordReader.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/SingleFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/InterleavedFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/class-use/FastqRecordReader.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/class-use/SingleFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/class-use/InterleavedFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/class-use/FastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/python/DataFrameConversionWrapper.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToVariantContextsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToAlignmentDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToSequenceDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToCoverageDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToVariantContextDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToReadDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToVariantContextsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToGenotypeDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToSliceDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToFeatureConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/JavaADAMContext$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToFeatureDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToVariantDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToVariantContextsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToFragmentDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/JavaADAMContext.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSlices.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformGenotypes$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformGenotypesArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFeaturesArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformAlignments$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformVariantsArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformGenotypes.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSequences$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformVariants$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountSliceKmers$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFragments$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformAlignmentsArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFragments.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSequencesArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformAlignments.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFragmentsArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/MergeShardsArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformVariants.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountSliceKmers.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSlicesArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountSliceKmersArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountReadKmers$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSequences.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFeatures.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountReadKmersArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSlices$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFeatures$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/repo/adam-assembly-spark2_2.11-0.33.0-SNAPSHOT-javadoc.jar longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/repo/adam-assembly-spark2_2.11-0.33.0-SNAPSHOT-sources.jar longer than 100 characters.
[INFO] Building zip: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/adam-distribution/target/adam-distribution-spark2_2.11-0.33.0-SNAPSHOT-bin.zip
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary for ADAM_2.11 0.33.0-SNAPSHOT:
[INFO] 
[INFO] ADAM_2.11 .......................................... SUCCESS [  7.202 s]
[INFO] ADAM_2.11: Shader workaround ....................... SUCCESS [  4.015 s]
[INFO] ADAM_2.11: Avro-to-Dataset codegen utils ........... SUCCESS [  3.338 s]
[INFO] ADAM_2.11: Core .................................... SUCCESS [01:11 min]
[INFO] ADAM_2.11: APIs for Java, Python ................... SUCCESS [  9.359 s]
[INFO] ADAM_2.11: CLI ..................................... SUCCESS [ 17.096 s]
[INFO] ADAM_2.11: Assembly ................................ SUCCESS [ 13.496 s]
[INFO] ADAM_2.11: Distribution ............................ SUCCESS [ 31.109 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESS
[INFO] ------------------------------------------------------------------------
[INFO] Total time:  02:36 min
[INFO] Finished at: 2020-10-19T19:16:56-07:00
[INFO] ------------------------------------------------------------------------

# make sure that the distribution package contains an assembly jar
# if no assembly jar is found, this will exit with code 1 and fail the build
tar tzvf adam-distribution/target/adam-distribution*-bin.tar.gz | \
    grep adam-assembly | \
    grep jar | \
    grep -v -e sources -e javadoc 
+ grep adam-assembly
+ grep jar
+ grep -v -e sources -e javadoc
+ tar tzvf adam-distribution/target/adam-distribution-spark2_2.11-0.33.0-SNAPSHOT-bin.tar.gz
-rw-r--r-- jenkins/jenkins 49266764 2020-10-19 19:16 adam-distribution-spark2_2.11-0.33.0-SNAPSHOT/repo/adam-assembly-spark2_2.11-0.33.0-SNAPSHOT.jar

# we are done with maven, so clean up the maven temp dir
find ${ADAM_MVN_TMP_DIR}
+ find /tmp/adamTestMvnp6vi9tr
/tmp/adamTestMvnp6vi9tr
/tmp/adamTestMvnp6vi9tr/TempSuite4921542065566152525.fq
/tmp/adamTestMvnp6vi9tr/TempSuite4921542065566152525.fq/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4921542065566152525.fq/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite4921542065566152525.fq/part-00000
/tmp/adamTestMvnp6vi9tr/TempSuite4921542065566152525.fq/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite898410229662454241
/tmp/adamTestMvnp6vi9tr/TempSuite415341459376480349
/tmp/adamTestMvnp6vi9tr/TempSuite294695866996960786
/tmp/adamTestMvnp6vi9tr/unordered.sam1020566369968106622.sam
/tmp/adamTestMvnp6vi9tr/TempSuite3587098943542972091.sam
/tmp/adamTestMvnp6vi9tr/TempSuite3587098943542972091.sam/part-r-00000.sam
/tmp/adamTestMvnp6vi9tr/TempSuite3587098943542972091.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3587098943542972091.sam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite3587098943542972091.sam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1329526719223603940
/tmp/adamTestMvnp6vi9tr/.ReadDatasetSuite6177602036989975654.fastq.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7830937694798992326
/tmp/adamTestMvnp6vi9tr/TempSuite5446368902670588340.adam
/tmp/adamTestMvnp6vi9tr/TempSuite5446368902670588340.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5446368902670588340.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5446368902670588340.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/TempSuite5446368902670588340.adam/.part-00000-bdf3ba81-f6b5-45eb-a0bd-b8ccba0d4d79-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5446368902670588340.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/TempSuite5446368902670588340.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite5446368902670588340.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite5446368902670588340.adam/part-00000-bdf3ba81-f6b5-45eb-a0bd-b8ccba0d4d79-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite5446368902670588340.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5446368902670588340.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7986857040715991058
/tmp/adamTestMvnp6vi9tr/TempSuite2134445173955125083.adam
/tmp/adamTestMvnp6vi9tr/TempSuite2134445173955125083.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2134445173955125083.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite2134445173955125083.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite2134445173955125083.adam/.part-00000-190f5799-0f50-4ee1-9df7-8661d02dc820-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2134445173955125083.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2134445173955125083.adam/part-00000-190f5799-0f50-4ee1-9df7-8661d02dc820-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite3260824043670587775
/tmp/adamTestMvnp6vi9tr/TempSuite1602872343628323431.adam
/tmp/adamTestMvnp6vi9tr/TempSuite1602872343628323431.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite1602872343628323431.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite1602872343628323431.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1602872343628323431.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1602872343628323431.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite1602872343628323431.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite1602872343628323431.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1602872343628323431.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite1602872343628323431.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1602872343628323431.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite1602872343628323431.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1602872343628323431.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite1602872343628323431.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1602872343628323431.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite1602872343628323431.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1602872343628323431.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1602872343628323431.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1602872343628323431.adam/_header
/tmp/adamTestMvnp6vi9tr/TempSuite1498182108236507307
/tmp/adamTestMvnp6vi9tr/TempSuite2079271288829021591
/tmp/adamTestMvnp6vi9tr/TempSuite9153458207480374855
/tmp/adamTestMvnp6vi9tr/TempSuite1815951368109920139.adam
/tmp/adamTestMvnp6vi9tr/TempSuite1815951368109920139.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite1815951368109920139.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1815951368109920139.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite1815951368109920139.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite1815951368109920139.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1815951368109920139.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1815951368109920139.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite1815951368109920139.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite1815951368109920139.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1815951368109920139.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite665521418124479663
/tmp/adamTestMvnp6vi9tr/TempSuite8570172958009944045
/tmp/adamTestMvnp6vi9tr/TempSuite7270867838868999367.adam
/tmp/adamTestMvnp6vi9tr/TempSuite7270867838868999367.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite7270867838868999367.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7270867838868999367.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7270867838868999367.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/TempSuite7270867838868999367.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite7270867838868999367.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/TempSuite7270867838868999367.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite7270867838868999367.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7270867838868999367.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7270867838868999367.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite7270867838868999367.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite7270867838868999367.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7270867838868999367.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7270867838868999367.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/artificial.cram3296288575743873156.cram
/tmp/adamTestMvnp6vi9tr/sorted-variants.vcf2385056059984879467.vcf
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite5299688746305685315.narrowPeak
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite5299688746305685315.narrowPeak/.part-00003.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite5299688746305685315.narrowPeak/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite5299688746305685315.narrowPeak/_SUCCESS
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite5299688746305685315.narrowPeak/part-00003
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite5299688746305685315.narrowPeak/part-00000
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite5299688746305685315.narrowPeak/part-00002
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite5299688746305685315.narrowPeak/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite5299688746305685315.narrowPeak/.part-00002.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite5299688746305685315.narrowPeak/part-00001
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite5299688746305685315.narrowPeak/.part-00001.crc
/tmp/adamTestMvnp6vi9tr/TempSuite9019943713483017204
/tmp/adamTestMvnp6vi9tr/1603159530118-0
/tmp/adamTestMvnp6vi9tr/1603159530118-0/.test.gvcf.vcf.crc
/tmp/adamTestMvnp6vi9tr/1603159530118-0/test.gvcf.vcf
/tmp/adamTestMvnp6vi9tr/random.vcf6839593996628141515.vcf
/tmp/adamTestMvnp6vi9tr/7140304396297787496
/tmp/adamTestMvnp6vi9tr/7140304396297787496/sorted-variants.vcf
/tmp/adamTestMvnp6vi9tr/7140304396297787496/.sorted-variants.vcf.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite5830139963975570668.narrowPeak
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite5830139963975570668.narrowPeak/.part-00003.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite5830139963975570668.narrowPeak/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite5830139963975570668.narrowPeak/_SUCCESS
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite5830139963975570668.narrowPeak/part-00003
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite5830139963975570668.narrowPeak/part-00000
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite5830139963975570668.narrowPeak/part-00002
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite5830139963975570668.narrowPeak/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite5830139963975570668.narrowPeak/.part-00002.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite5830139963975570668.narrowPeak/part-00001
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite5830139963975570668.narrowPeak/.part-00001.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6665414693604320976
/tmp/adamTestMvnp6vi9tr/random.vcf6581555426594173939.vcf
/tmp/adamTestMvnp6vi9tr/noqual6383191156332380144
/tmp/adamTestMvnp6vi9tr/noqual6383191156332380144/noqualB.fastq
/tmp/adamTestMvnp6vi9tr/noqual6383191156332380144/noqualB.fastq/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/noqual6383191156332380144/noqualB.fastq/_SUCCESS
/tmp/adamTestMvnp6vi9tr/noqual6383191156332380144/noqualB.fastq/part-00000
/tmp/adamTestMvnp6vi9tr/noqual6383191156332380144/noqualB.fastq/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/noqual6383191156332380144/noqualA.sam
/tmp/adamTestMvnp6vi9tr/noqual6383191156332380144/noqualA.sam/part-r-00000.sam
/tmp/adamTestMvnp6vi9tr/noqual6383191156332380144/noqualA.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnp6vi9tr/noqual6383191156332380144/noqualA.sam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/noqual6383191156332380144/noqualA.sam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8677905615355571600
/tmp/adamTestMvnp6vi9tr/TempSuite4587493772953416627.adam
/tmp/adamTestMvnp6vi9tr/TempSuite4587493772953416627.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4587493772953416627.adam/.part-00000-42823425-5648-43ef-a159-a645b22f8b8d-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4587493772953416627.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4587493772953416627.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/TempSuite4587493772953416627.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/TempSuite4587493772953416627.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite4587493772953416627.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite4587493772953416627.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4587493772953416627.adam/part-00000-42823425-5648-43ef-a159-a645b22f8b8d-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite4587493772953416627.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/unordered.sam2308256938566913795.sam
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7200817046384854729
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite1962057082908286357.gff3
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite1962057082908286357.gff3/.part-00003.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite1962057082908286357.gff3/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite1962057082908286357.gff3/_SUCCESS
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite1962057082908286357.gff3/part-00003
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite1962057082908286357.gff3/part-00000
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite1962057082908286357.gff3/part-00002
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite1962057082908286357.gff3/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite1962057082908286357.gff3/.part-00002.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite1962057082908286357.gff3/part-00001
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite1962057082908286357.gff3/.part-00001.crc
/tmp/adamTestMvnp6vi9tr/unordered.sam3540986223406089140.sam
/tmp/adamTestMvnp6vi9tr/TempSuite2037995062959698029.bed
/tmp/adamTestMvnp6vi9tr/TempSuite2037995062959698029.bed/.part-00003.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2037995062959698029.bed/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2037995062959698029.bed/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite2037995062959698029.bed/part-00003
/tmp/adamTestMvnp6vi9tr/TempSuite2037995062959698029.bed/part-00000
/tmp/adamTestMvnp6vi9tr/TempSuite2037995062959698029.bed/part-00002
/tmp/adamTestMvnp6vi9tr/TempSuite2037995062959698029.bed/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2037995062959698029.bed/.part-00002.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2037995062959698029.bed/part-00001
/tmp/adamTestMvnp6vi9tr/TempSuite2037995062959698029.bed/.part-00001.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2982355743745637622.adam
/tmp/adamTestMvnp6vi9tr/TempSuite2982355743745637622.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2982355743745637622.adam/.part-00000-43ef1d7e-6c0c-45ea-9df3-91d07a88ba83-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2982355743745637622.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite2982355743745637622.adam/part-00002-43ef1d7e-6c0c-45ea-9df3-91d07a88ba83-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite2982355743745637622.adam/part-00000-43ef1d7e-6c0c-45ea-9df3-91d07a88ba83-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite2982355743745637622.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite2982355743745637622.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2982355743745637622.adam/.part-00001-43ef1d7e-6c0c-45ea-9df3-91d07a88ba83-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2982355743745637622.adam/part-00001-43ef1d7e-6c0c-45ea-9df3-91d07a88ba83-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite2982355743745637622.adam/.part-00002-43ef1d7e-6c0c-45ea-9df3-91d07a88ba83-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1911108660893264389.adam
/tmp/adamTestMvnp6vi9tr/TempSuite1911108660893264389.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1911108660893264389.adam/.part-00000-ab395c88-6b6d-48d6-98cd-823220da18ad-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1911108660893264389.adam/part-00000-ab395c88-6b6d-48d6-98cd-823220da18ad-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite1911108660893264389.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite1911108660893264389.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite1911108660893264389.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1911108660893264389.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1911108660893264389.adam/_header
/tmp/adamTestMvnp6vi9tr/TempSuite6789942263142134697.adam
/tmp/adamTestMvnp6vi9tr/TempSuite6789942263142134697.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6789942263142134697.adam/.part-00000-4991ad40-b2a2-44c0-b0fa-f42c3c4d0c05-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6789942263142134697.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite6789942263142134697.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite6789942263142134697.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6789942263142134697.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6789942263142134697.adam/part-00000-4991ad40-b2a2-44c0-b0fa-f42c3c4d0c05-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite6789942263142134697.adam/_header
/tmp/adamTestMvnp6vi9tr/TempSuite7347374701255081002.adam
/tmp/adamTestMvnp6vi9tr/TempSuite7347374701255081002.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite7347374701255081002.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7347374701255081002.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7347374701255081002.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/TempSuite7347374701255081002.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite7347374701255081002.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/TempSuite7347374701255081002.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite7347374701255081002.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7347374701255081002.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7347374701255081002.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite7347374701255081002.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite7347374701255081002.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7347374701255081002.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7347374701255081002.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/.TempSuite5690701195767138506.sam.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4974202934566526800.adam
/tmp/adamTestMvnp6vi9tr/TempSuite4974202934566526800.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite4974202934566526800.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4974202934566526800.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4974202934566526800.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/TempSuite4974202934566526800.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite4974202934566526800.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/TempSuite4974202934566526800.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite4974202934566526800.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4974202934566526800.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4974202934566526800.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite4974202934566526800.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite4974202934566526800.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4974202934566526800.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4974202934566526800.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite641243964012888430.adam
/tmp/adamTestMvnp6vi9tr/TempSuite641243964012888430.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite641243964012888430.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite641243964012888430.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite641243964012888430.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/TempSuite641243964012888430.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite641243964012888430.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/TempSuite641243964012888430.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite641243964012888430.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite641243964012888430.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite641243964012888430.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite641243964012888430.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite641243964012888430.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite641243964012888430.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite641243964012888430.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4849196910227591811.adam
/tmp/adamTestMvnp6vi9tr/TempSuite4849196910227591811.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite4849196910227591811.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4849196910227591811.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite4849196910227591811.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite4849196910227591811.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4849196910227591811.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4849196910227591811.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite4849196910227591811.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite4849196910227591811.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4849196910227591811.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4849196910227591811.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4849196910227591811.adam/_header
/tmp/adamTestMvnp6vi9tr/TempSuite3106036682446944110.bed
/tmp/adamTestMvnp6vi9tr/TempSuite3106036682446944110.bed/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3106036682446944110.bed/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite3106036682446944110.bed/part-00000
/tmp/adamTestMvnp6vi9tr/TempSuite3106036682446944110.bed/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite4287790069235834162
/tmp/adamTestMvnp6vi9tr/TempSuite8569989031351970547
/tmp/adamTestMvnp6vi9tr/unsorted.sam3355952503396995369.sam
/tmp/adamTestMvnp6vi9tr/TempSuite6901241104315779522.adam
/tmp/adamTestMvnp6vi9tr/TempSuite6901241104315779522.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite6901241104315779522.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6901241104315779522.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6901241104315779522.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/TempSuite6901241104315779522.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite6901241104315779522.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/TempSuite6901241104315779522.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite6901241104315779522.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6901241104315779522.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6901241104315779522.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite6901241104315779522.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite6901241104315779522.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6901241104315779522.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6901241104315779522.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4109427063543734977.sam
/tmp/adamTestMvnp6vi9tr/TempSuite7769852889788736386
/tmp/adamTestMvnp6vi9tr/TempSuite733852142117484278.bed
/tmp/adamTestMvnp6vi9tr/TempSuite733852142117484278.bed/.part-00003.crc
/tmp/adamTestMvnp6vi9tr/TempSuite733852142117484278.bed/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/TempSuite733852142117484278.bed/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite733852142117484278.bed/part-00003
/tmp/adamTestMvnp6vi9tr/TempSuite733852142117484278.bed/part-00000
/tmp/adamTestMvnp6vi9tr/TempSuite733852142117484278.bed/part-00002
/tmp/adamTestMvnp6vi9tr/TempSuite733852142117484278.bed/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite733852142117484278.bed/.part-00002.crc
/tmp/adamTestMvnp6vi9tr/TempSuite733852142117484278.bed/part-00001
/tmp/adamTestMvnp6vi9tr/TempSuite733852142117484278.bed/.part-00001.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2725178819940013012
/tmp/adamTestMvnp6vi9tr/TempSuite8647482247900275421
/tmp/adamTestMvnp6vi9tr/TempSuite4929009978619916003.adam
/tmp/adamTestMvnp6vi9tr/TempSuite4929009978619916003.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite4929009978619916003.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4929009978619916003.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4929009978619916003.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/TempSuite4929009978619916003.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite4929009978619916003.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/TempSuite4929009978619916003.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite4929009978619916003.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4929009978619916003.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4929009978619916003.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite4929009978619916003.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite4929009978619916003.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4929009978619916003.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4929009978619916003.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6154473346846053399
/tmp/adamTestMvnp6vi9tr/TempSuite7710715734841371028.adam
/tmp/adamTestMvnp6vi9tr/TempSuite7710715734841371028.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7710715734841371028.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7710715734841371028.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/TempSuite7710715734841371028.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/TempSuite7710715734841371028.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite7710715734841371028.adam/.part-00000-1fbbcf78-5b93-474a-9c59-a09bf3434d48-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7710715734841371028.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite7710715734841371028.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7710715734841371028.adam/part-00000-1fbbcf78-5b93-474a-9c59-a09bf3434d48-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite7710715734841371028.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8879932439749227268
/tmp/adamTestMvnp6vi9tr/TempSuite5341633731809204065
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4093371270474370892.bed
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4093371270474370892.bed/.part-00003.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4093371270474370892.bed/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4093371270474370892.bed/_SUCCESS
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4093371270474370892.bed/part-00003
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4093371270474370892.bed/part-00000
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4093371270474370892.bed/part-00002
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4093371270474370892.bed/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4093371270474370892.bed/.part-00002.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4093371270474370892.bed/part-00001
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4093371270474370892.bed/.part-00001.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite2460268340097465485.gff3
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite2460268340097465485.gff3/.part-00003.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite2460268340097465485.gff3/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite2460268340097465485.gff3/_SUCCESS
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite2460268340097465485.gff3/part-00003
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite2460268340097465485.gff3/part-00000
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite2460268340097465485.gff3/part-00002
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite2460268340097465485.gff3/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite2460268340097465485.gff3/.part-00002.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite2460268340097465485.gff3/part-00001
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite2460268340097465485.gff3/.part-00001.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2893862485547131648.adam
/tmp/adamTestMvnp6vi9tr/TempSuite2893862485547131648.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite2893862485547131648.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite2893862485547131648.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2893862485547131648.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2893862485547131648.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2893862485547131648.adam/._partitionMap.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2893862485547131648.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/TempSuite2893862485547131648.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite2893862485547131648.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/TempSuite2893862485547131648.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite2893862485547131648.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2893862485547131648.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite2893862485547131648.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2893862485547131648.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite2893862485547131648.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2893862485547131648.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite2893862485547131648.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2893862485547131648.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite2893862485547131648.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2893862485547131648.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2893862485547131648.adam/_partitionMap.avro
/tmp/adamTestMvnp6vi9tr/TempSuite2893862485547131648.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3469790437880577803
/tmp/adamTestMvnp6vi9tr/TempSuite1116486192798401344
/tmp/adamTestMvnp6vi9tr/TempSuite9034094110595890389.adam
/tmp/adamTestMvnp6vi9tr/TempSuite9034094110595890389.adam/part-00002-8ecf908e-0826-4763-bde4-65f2e38d811f-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite9034094110595890389.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite9034094110595890389.adam/.part-00001-8ecf908e-0826-4763-bde4-65f2e38d811f-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite9034094110595890389.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite9034094110595890389.adam/.part-00000-8ecf908e-0826-4763-bde4-65f2e38d811f-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite9034094110595890389.adam/.part-00002-8ecf908e-0826-4763-bde4-65f2e38d811f-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite9034094110595890389.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite9034094110595890389.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/TempSuite9034094110595890389.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite9034094110595890389.adam/part-00001-8ecf908e-0826-4763-bde4-65f2e38d811f-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite9034094110595890389.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite9034094110595890389.adam/part-00000-8ecf908e-0826-4763-bde4-65f2e38d811f-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite1915859636160079144.bam
/tmp/adamTestMvnp6vi9tr/TempSuite1915859636160079144.bam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite1915859636160079144.bam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1915859636160079144.bam/.part-r-00000.bam.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1915859636160079144.bam/part-r-00000.bam
/tmp/adamTestMvnp6vi9tr/TempSuite5350278570848410593
/tmp/adamTestMvnp6vi9tr/.FeatureDatasetFunctionsSuite784137544223458321.gff3.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5088931115380425545.adam
/tmp/adamTestMvnp6vi9tr/TempSuite5088931115380425545.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5088931115380425545.adam/.part-00000-112bbb1b-9eff-40dc-8cf0-fa0454ed8918-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5088931115380425545.adam/part-00000-112bbb1b-9eff-40dc-8cf0-fa0454ed8918-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite5088931115380425545.adam/.part-00001-112bbb1b-9eff-40dc-8cf0-fa0454ed8918-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5088931115380425545.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5088931115380425545.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/TempSuite5088931115380425545.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/TempSuite5088931115380425545.adam/.part-00002-112bbb1b-9eff-40dc-8cf0-fa0454ed8918-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5088931115380425545.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite5088931115380425545.adam/part-00001-112bbb1b-9eff-40dc-8cf0-fa0454ed8918-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite5088931115380425545.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite5088931115380425545.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5088931115380425545.adam/part-00002-112bbb1b-9eff-40dc-8cf0-fa0454ed8918-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite5088931115380425545.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/7508249078362352970
/tmp/adamTestMvnp6vi9tr/7508249078362352970/variants.adam
/tmp/adamTestMvnp6vi9tr/7508249078362352970/variants.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/7508249078362352970/variants.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/7508249078362352970/variants.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/7508249078362352970/variants.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/7508249078362352970/variants.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/7508249078362352970/variants.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/7508249078362352970/variants.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/7508249078362352970/variants.adam/_metadata
/tmp/adamTestMvnp6vi9tr/7508249078362352970/variants.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/7508249078362352970/variants.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/7508249078362352970/variants.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/7508249078362352970/variants.adam/_header
/tmp/adamTestMvnp6vi9tr/TempSuite2692150915134797162.sam
/tmp/adamTestMvnp6vi9tr/TempSuite2692150915134797162.sam/part-r-00000.sam
/tmp/adamTestMvnp6vi9tr/TempSuite2692150915134797162.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2692150915134797162.sam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite2692150915134797162.sam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/5608838821165173873
/tmp/adamTestMvnp6vi9tr/5608838821165173873/predicate.3.adam
/tmp/adamTestMvnp6vi9tr/5608838821165173873/predicate.3.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/5608838821165173873/predicate.3.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/5608838821165173873/predicate.3.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/5608838821165173873/predicate.3.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/5608838821165173873/predicate.3.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/5608838821165173873/predicate.3.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/5608838821165173873/predicate.3.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/5608838821165173873/predicate.3.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/5608838821165173873/predicate.3.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/5608838821165173873/predicate.3.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/5608838821165173873/predicate.3.adam/_metadata
/tmp/adamTestMvnp6vi9tr/5608838821165173873/predicate.3.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/5608838821165173873/predicate.3.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/5608838821165173873/predicate.3.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3259113058597057441
/tmp/adamTestMvnp6vi9tr/.TempSuite4823663574499243272_1.fq.crc
/tmp/adamTestMvnp6vi9tr/.TempSuite2429035286481088298.bam.crc
/tmp/adamTestMvnp6vi9tr/gencode.v7.annotation.trunc10.bed7274168284633768804.v7.annotation.trunc10.bed
/tmp/adamTestMvnp6vi9tr/TempSuite599687314120163786
/tmp/adamTestMvnp6vi9tr/TempSuite8100272842653202330
/tmp/adamTestMvnp6vi9tr/1603159276143-0
/tmp/adamTestMvnp6vi9tr/1603159276143-0/bamReads.adam
/tmp/adamTestMvnp6vi9tr/1603159276143-0/bamReads.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/1603159276143-0/bamReads.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/1603159276143-0/bamReads.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/1603159276143-0/bamReads.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/1603159276143-0/bamReads.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/1603159276143-0/bamReads.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/1603159276143-0/bamReads.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/1603159276143-0/bamReads.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/1603159276143-0/bamReads.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/1603159276143-0/bamReads.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/1603159276143-0/bamReads.adam/_metadata
/tmp/adamTestMvnp6vi9tr/1603159276143-0/bamReads.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/1603159276143-0/bamReads.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/1603159276143-0/bamReads.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite1004493889874243471.adam
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite1004493889874243471.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite1004493889874243471.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite1004493889874243471.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite1004493889874243471.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite1004493889874243471.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite1004493889874243471.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite1004493889874243471.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite1004493889874243471.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite1004493889874243471.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite1004493889874243471.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite1004493889874243471.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite1004493889874243471.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite1004493889874243471.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite1004493889874243471.adam/_metadata
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite1004493889874243471.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite1004493889874243471.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2422932154140067874
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite2748366040480703961
/tmp/adamTestMvnp6vi9tr/.TempSuite184676115806135977_2.fq.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4143834238703747345.fq
/tmp/adamTestMvnp6vi9tr/TempSuite4143834238703747345.fq/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4143834238703747345.fq/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite4143834238703747345.fq/part-00000
/tmp/adamTestMvnp6vi9tr/TempSuite4143834238703747345.fq/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1236494805602492766
/tmp/adamTestMvnp6vi9tr/TempSuite1720047956979708341
/tmp/adamTestMvnp6vi9tr/TempSuite3125362639147488652reads12.sam
/tmp/adamTestMvnp6vi9tr/TempSuite3719271194033762452.adam
/tmp/adamTestMvnp6vi9tr/TempSuite3719271194033762452.adam/.part-00001-c37de859-baa8-4eb2-99eb-c74efb983a97-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3719271194033762452.adam/part-00000-c37de859-baa8-4eb2-99eb-c74efb983a97-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite3719271194033762452.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3719271194033762452.adam/.part-00000-c37de859-baa8-4eb2-99eb-c74efb983a97-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3719271194033762452.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3719271194033762452.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/TempSuite3719271194033762452.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/TempSuite3719271194033762452.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite3719271194033762452.adam/.part-00002-c37de859-baa8-4eb2-99eb-c74efb983a97-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3719271194033762452.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite3719271194033762452.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3719271194033762452.adam/part-00002-c37de859-baa8-4eb2-99eb-c74efb983a97-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite3719271194033762452.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3719271194033762452.adam/part-00001-c37de859-baa8-4eb2-99eb-c74efb983a97-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite2725178819940013012.bed
/tmp/adamTestMvnp6vi9tr/TempSuite2725178819940013012.bed/.part-00003.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2725178819940013012.bed/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2725178819940013012.bed/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite2725178819940013012.bed/part-00003
/tmp/adamTestMvnp6vi9tr/TempSuite2725178819940013012.bed/part-00000
/tmp/adamTestMvnp6vi9tr/TempSuite2725178819940013012.bed/part-00002
/tmp/adamTestMvnp6vi9tr/TempSuite2725178819940013012.bed/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2725178819940013012.bed/.part-00002.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2725178819940013012.bed/part-00001
/tmp/adamTestMvnp6vi9tr/TempSuite2725178819940013012.bed/.part-00001.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5335723469532278322_2.fq
/tmp/adamTestMvnp6vi9tr/TempSuite5335723469532278322_2.fq/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5335723469532278322_2.fq/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite5335723469532278322_2.fq/part-00000
/tmp/adamTestMvnp6vi9tr/TempSuite5335723469532278322_2.fq/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite7679849268327084162.fastq
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7010168583727370740.gff3
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7010168583727370740.gff3/.part-00003.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7010168583727370740.gff3/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7010168583727370740.gff3/_SUCCESS
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7010168583727370740.gff3/part-00003
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7010168583727370740.gff3/part-00000
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7010168583727370740.gff3/part-00002
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7010168583727370740.gff3/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7010168583727370740.gff3/.part-00002.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7010168583727370740.gff3/part-00001
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7010168583727370740.gff3/.part-00001.crc
/tmp/adamTestMvnp6vi9tr/2389949569136796200
/tmp/adamTestMvnp6vi9tr/2389949569136796200/sorted.sam
/tmp/adamTestMvnp6vi9tr/2389949569136796200/.sorted.sam.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6239013708510882465
/tmp/adamTestMvnp6vi9tr/5144573132663446385
/tmp/adamTestMvnp6vi9tr/5144573132663446385/binned.adam
/tmp/adamTestMvnp6vi9tr/5144573132663446385/binned.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/5144573132663446385/binned.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/5144573132663446385/binned.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/5144573132663446385/binned.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/5144573132663446385/binned.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/5144573132663446385/binned.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/5144573132663446385/binned.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/5144573132663446385/binned.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/5144573132663446385/binned.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/5144573132663446385/binned.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/5144573132663446385/binned.adam/_metadata
/tmp/adamTestMvnp6vi9tr/5144573132663446385/binned.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/5144573132663446385/binned.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/5144573132663446385/binned.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3047545956527246062.bed
/tmp/adamTestMvnp6vi9tr/TempSuite3047545956527246062.bed/.part-00003.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3047545956527246062.bed/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3047545956527246062.bed/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite3047545956527246062.bed/part-00003
/tmp/adamTestMvnp6vi9tr/TempSuite3047545956527246062.bed/part-00000
/tmp/adamTestMvnp6vi9tr/TempSuite3047545956527246062.bed/part-00002
/tmp/adamTestMvnp6vi9tr/TempSuite3047545956527246062.bed/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3047545956527246062.bed/.part-00002.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3047545956527246062.bed/part-00001
/tmp/adamTestMvnp6vi9tr/TempSuite3047545956527246062.bed/.part-00001.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1004695068423240539.adam
/tmp/adamTestMvnp6vi9tr/TempSuite1004695068423240539.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite1004695068423240539.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1004695068423240539.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1004695068423240539.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/TempSuite1004695068423240539.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite1004695068423240539.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/TempSuite1004695068423240539.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite1004695068423240539.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1004695068423240539.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1004695068423240539.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite1004695068423240539.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite1004695068423240539.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1004695068423240539.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1004695068423240539.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4494469313662355404.adam
/tmp/adamTestMvnp6vi9tr/TempSuite4494469313662355404.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite4494469313662355404.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite4494469313662355404.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4494469313662355404.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4494469313662355404.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4494469313662355404.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/TempSuite4494469313662355404.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite4494469313662355404.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/TempSuite4494469313662355404.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite4494469313662355404.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4494469313662355404.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite4494469313662355404.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4494469313662355404.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite4494469313662355404.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4494469313662355404.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite4494469313662355404.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4494469313662355404.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite4494469313662355404.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4494469313662355404.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4494469313662355404.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4121480216548783219
/tmp/adamTestMvnp6vi9tr/TempSuite7710715734841371028
/tmp/adamTestMvnp6vi9tr/TempSuite4222728576828115549.adam
/tmp/adamTestMvnp6vi9tr/TempSuite4222728576828115549.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite4222728576828115549.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4222728576828115549.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite4222728576828115549.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite4222728576828115549.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4222728576828115549.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4222728576828115549.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite4222728576828115549.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite4222728576828115549.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4222728576828115549.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4222728576828115549.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4222728576828115549.adam/_header
/tmp/adamTestMvnp6vi9tr/TempSuite720077421628341610.adam
/tmp/adamTestMvnp6vi9tr/TempSuite720077421628341610.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite720077421628341610.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite720077421628341610.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite720077421628341610.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite720077421628341610.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite720077421628341610.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite720077421628341610.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite720077421628341610.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite720077421628341610.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite720077421628341610.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite720077421628341610.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite720077421628341610.adam/_header
/tmp/adamTestMvnp6vi9tr/TempSuite4753430408079207851
/tmp/adamTestMvnp6vi9tr/bqsr1.sam5472363356844522780.sam
/tmp/adamTestMvnp6vi9tr/TempSuite7851587388838864645.fq
/tmp/adamTestMvnp6vi9tr/TempSuite3469790437880577803.adam
/tmp/adamTestMvnp6vi9tr/TempSuite3469790437880577803.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3469790437880577803.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite3469790437880577803.adam/part-00000-a300e531-0e04-4a6d-acf8-bcf1bd65a2de-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite3469790437880577803.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite3469790437880577803.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/TempSuite3469790437880577803.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3469790437880577803.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3469790437880577803.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3469790437880577803.adam/.part-00000-a300e531-0e04-4a6d-acf8-bcf1bd65a2de-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3469790437880577803.adam/_header
/tmp/adamTestMvnp6vi9tr/TempSuite1976525752313132007
/tmp/adamTestMvnp6vi9tr/artificial.sam8504149136982296655.sam
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite5830139963975570668
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite6683185573434484577.fasta
/tmp/adamTestMvnp6vi9tr/TempSuite8618941253455535370.adam
/tmp/adamTestMvnp6vi9tr/TempSuite8618941253455535370.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite8618941253455535370.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8618941253455535370.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8618941253455535370.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/TempSuite8618941253455535370.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite8618941253455535370.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/TempSuite8618941253455535370.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite8618941253455535370.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8618941253455535370.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8618941253455535370.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite8618941253455535370.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite8618941253455535370.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8618941253455535370.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8618941253455535370.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4921542065566152525
/tmp/adamTestMvnp6vi9tr/TempSuite3714502793801425713.adam
/tmp/adamTestMvnp6vi9tr/TempSuite3714502793801425713.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3714502793801425713.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite3714502793801425713.adam/_partitionedByStartPos
/tmp/adamTestMvnp6vi9tr/TempSuite3714502793801425713.adam/referenceName=1
/tmp/adamTestMvnp6vi9tr/TempSuite3714502793801425713.adam/referenceName=1/positionBin=0
/tmp/adamTestMvnp6vi9tr/TempSuite3714502793801425713.adam/referenceName=1/positionBin=0/.part-00000-0c475efa-b3de-420b-9bce-dd55c1844de7.c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3714502793801425713.adam/referenceName=1/positionBin=0/part-00000-0c475efa-b3de-420b-9bce-dd55c1844de7.c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite3714502793801425713.adam/referenceName=1/positionBin=169
/tmp/adamTestMvnp6vi9tr/TempSuite3714502793801425713.adam/referenceName=1/positionBin=169/part-00001-0c475efa-b3de-420b-9bce-dd55c1844de7.c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite3714502793801425713.adam/referenceName=1/positionBin=169/.part-00001-0c475efa-b3de-420b-9bce-dd55c1844de7.c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3714502793801425713.adam/referenceName=1/positionBin=14
/tmp/adamTestMvnp6vi9tr/TempSuite3714502793801425713.adam/referenceName=1/positionBin=14/.part-00000-0c475efa-b3de-420b-9bce-dd55c1844de7.c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3714502793801425713.adam/referenceName=1/positionBin=14/part-00000-0c475efa-b3de-420b-9bce-dd55c1844de7.c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite3714502793801425713.adam/referenceName=1/positionBin=240
/tmp/adamTestMvnp6vi9tr/TempSuite3714502793801425713.adam/referenceName=1/positionBin=240/part-00002-0c475efa-b3de-420b-9bce-dd55c1844de7.c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite3714502793801425713.adam/referenceName=1/positionBin=240/.part-00002-0c475efa-b3de-420b-9bce-dd55c1844de7.c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3714502793801425713.adam/._partitionedByStartPos.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3714502793801425713.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite3714502793801425713.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/TempSuite3714502793801425713.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3714502793801425713.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3879290508134810664.adam
/tmp/adamTestMvnp6vi9tr/TempSuite3879290508134810664.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite3879290508134810664.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite3879290508134810664.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3879290508134810664.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3879290508134810664.adam/part-r-00004.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite3879290508134810664.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite3879290508134810664.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite3879290508134810664.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3879290508134810664.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite3879290508134810664.adam/.part-r-00004.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3879290508134810664.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3879290508134810664.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite3879290508134810664.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3879290508134810664.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite3879290508134810664.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/TempSuite3879290508134810664.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3879290508134810664.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite3879290508134810664.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3879290508134810664.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3879290508134810664.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite8419565447566146858.fastq
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite8419565447566146858.fastq/.part-00003.crc
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite8419565447566146858.fastq/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite8419565447566146858.fastq/_SUCCESS
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite8419565447566146858.fastq/part-00003
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite8419565447566146858.fastq/part-00000
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite8419565447566146858.fastq/part-00002
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite8419565447566146858.fastq/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite8419565447566146858.fastq/.part-00002.crc
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite8419565447566146858.fastq/part-00001
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite8419565447566146858.fastq/.part-00001.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8020906230245323354
/tmp/adamTestMvnp6vi9tr/6374424273251577972
/tmp/adamTestMvnp6vi9tr/6374424273251577972/unordered.adam
/tmp/adamTestMvnp6vi9tr/6374424273251577972/unordered.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/6374424273251577972/unordered.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/6374424273251577972/unordered.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/6374424273251577972/unordered.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/6374424273251577972/unordered.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/6374424273251577972/unordered.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/6374424273251577972/unordered.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/6374424273251577972/unordered.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/6374424273251577972/unordered.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/6374424273251577972/unordered.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/6374424273251577972/unordered.adam/_metadata
/tmp/adamTestMvnp6vi9tr/6374424273251577972/unordered.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/6374424273251577972/unordered.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/6374424273251577972/unordered.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7347374701255081002
/tmp/adamTestMvnp6vi9tr/TempSuite5096346962825499524
/tmp/adamTestMvnp6vi9tr/TempSuite4860325039068178339
/tmp/adamTestMvnp6vi9tr/random.vcf1182473152240203933.vcf
/tmp/adamTestMvnp6vi9tr/TempSuite8513564981779312578
/tmp/adamTestMvnp6vi9tr/TempSuite7288154359875631629
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4302732979224702354
/tmp/adamTestMvnp6vi9tr/TempSuite7649100605603810938
/tmp/adamTestMvnp6vi9tr/4197411294924039341
/tmp/adamTestMvnp6vi9tr/4197411294924039341/bqsr1.vcf.bgz
/tmp/adamTestMvnp6vi9tr/4197411294924039341/bqsr1.vcf.bgz/part-r-00000.bgz
/tmp/adamTestMvnp6vi9tr/4197411294924039341/bqsr1.vcf.bgz/.part-r-00000.bgz.crc
/tmp/adamTestMvnp6vi9tr/4197411294924039341/bqsr1.vcf.bgz/_SUCCESS
/tmp/adamTestMvnp6vi9tr/4197411294924039341/bqsr1.vcf.bgz/.part-r-00003.bgz.crc
/tmp/adamTestMvnp6vi9tr/4197411294924039341/bqsr1.vcf.bgz/part-r-00001.bgz
/tmp/adamTestMvnp6vi9tr/4197411294924039341/bqsr1.vcf.bgz/part-r-00003.bgz
/tmp/adamTestMvnp6vi9tr/4197411294924039341/bqsr1.vcf.bgz/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/4197411294924039341/bqsr1.vcf.bgz/part-r-00002.bgz
/tmp/adamTestMvnp6vi9tr/4197411294924039341/bqsr1.vcf.bgz/.part-r-00002.bgz.crc
/tmp/adamTestMvnp6vi9tr/4197411294924039341/bqsr1.vcf.bgz/.part-r-00001.bgz.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3587098943542972091
/tmp/adamTestMvnp6vi9tr/TempSuite6154473346846053399.adam
/tmp/adamTestMvnp6vi9tr/TempSuite6154473346846053399.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6154473346846053399.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite6154473346846053399.adam/_partitionedByStartPos
/tmp/adamTestMvnp6vi9tr/TempSuite6154473346846053399.adam/referenceName=13
/tmp/adamTestMvnp6vi9tr/TempSuite6154473346846053399.adam/referenceName=13/positionBin=0
/tmp/adamTestMvnp6vi9tr/TempSuite6154473346846053399.adam/referenceName=13/positionBin=0/.part-00000-082db5ec-5c53-4f2e-b841-0bcd48988ead.c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6154473346846053399.adam/referenceName=13/positionBin=0/part-00000-082db5ec-5c53-4f2e-b841-0bcd48988ead.c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite6154473346846053399.adam/referenceName=1
/tmp/adamTestMvnp6vi9tr/TempSuite6154473346846053399.adam/referenceName=1/positionBin=0
/tmp/adamTestMvnp6vi9tr/TempSuite6154473346846053399.adam/referenceName=1/positionBin=0/.part-00000-082db5ec-5c53-4f2e-b841-0bcd48988ead.c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6154473346846053399.adam/referenceName=1/positionBin=0/part-00000-082db5ec-5c53-4f2e-b841-0bcd48988ead.c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite6154473346846053399.adam/._partitionedByStartPos.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6154473346846053399.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite6154473346846053399.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/TempSuite6154473346846053399.adam/referenceName=2
/tmp/adamTestMvnp6vi9tr/TempSuite6154473346846053399.adam/referenceName=2/positionBin=0
/tmp/adamTestMvnp6vi9tr/TempSuite6154473346846053399.adam/referenceName=2/positionBin=0/.part-00000-082db5ec-5c53-4f2e-b841-0bcd48988ead.c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6154473346846053399.adam/referenceName=2/positionBin=0/part-00000-082db5ec-5c53-4f2e-b841-0bcd48988ead.c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite6154473346846053399.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6154473346846053399.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6154473346846053399.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6154473346846053399.adam/_header
/tmp/adamTestMvnp6vi9tr/TempSuite120647733813345752.bed
/tmp/adamTestMvnp6vi9tr/TempSuite120647733813345752.bed/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/TempSuite120647733813345752.bed/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite120647733813345752.bed/part-00000
/tmp/adamTestMvnp6vi9tr/TempSuite120647733813345752.bed/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7261448278137365606fragments.adam
/tmp/adamTestMvnp6vi9tr/TempSuite7261448278137365606fragments.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite7261448278137365606fragments.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7261448278137365606fragments.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7261448278137365606fragments.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/TempSuite7261448278137365606fragments.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite7261448278137365606fragments.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/TempSuite7261448278137365606fragments.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite7261448278137365606fragments.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7261448278137365606fragments.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7261448278137365606fragments.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite7261448278137365606fragments.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite7261448278137365606fragments.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7261448278137365606fragments.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7261448278137365606fragments.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4109427063543734977
/tmp/adamTestMvnp6vi9tr/TempSuite2162481232298950485
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7144242677573734242
/tmp/adamTestMvnp6vi9tr/TempSuite8647817395291691088
/tmp/adamTestMvnp6vi9tr/8938170861194396952
/tmp/adamTestMvnp6vi9tr/8938170861194396952/.sorted-variants.lex.vcf.crc
/tmp/adamTestMvnp6vi9tr/8938170861194396952/sorted-variants.lex.vcf
/tmp/adamTestMvnp6vi9tr/TempSuite2253090006734088128.adam
/tmp/adamTestMvnp6vi9tr/TempSuite2253090006734088128.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite2253090006734088128.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2253090006734088128.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite2253090006734088128.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite2253090006734088128.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2253090006734088128.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2253090006734088128.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite2253090006734088128.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite2253090006734088128.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2253090006734088128.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5923961432884763768.vcf
/tmp/adamTestMvnp6vi9tr/TempSuite5923961432884763768.vcf/.part-r-00000.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5923961432884763768.vcf/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite5923961432884763768.vcf/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5923961432884763768.vcf/part-r-00000
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7848544797983112552.interval_list
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7848544797983112552.interval_list/.part-00003.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7848544797983112552.interval_list/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7848544797983112552.interval_list/_SUCCESS
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7848544797983112552.interval_list/part-00003
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7848544797983112552.interval_list/part-00000
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7848544797983112552.interval_list/part-00002
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7848544797983112552.interval_list/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7848544797983112552.interval_list/.part-00002.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7848544797983112552.interval_list/part-00001
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7848544797983112552.interval_list/.part-00001.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite5299688746305685315
/tmp/adamTestMvnp6vi9tr/TempSuite6137263430736945272.fq
/tmp/adamTestMvnp6vi9tr/TempSuite6137263430736945272.fq/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6137263430736945272.fq/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite6137263430736945272.fq/part-00000
/tmp/adamTestMvnp6vi9tr/TempSuite6137263430736945272.fq/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6137263430736945272
/tmp/adamTestMvnp6vi9tr/TempSuite3631378894408778034
/tmp/adamTestMvnp6vi9tr/TempSuite5186442357439914579.adam
/tmp/adamTestMvnp6vi9tr/TempSuite5186442357439914579.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5186442357439914579.adam/.part-00000-5ce125c2-326c-442a-b6f3-d07b08d61d1b-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5186442357439914579.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite5186442357439914579.adam/part-00000-5ce125c2-326c-442a-b6f3-d07b08d61d1b-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite5186442357439914579.adam/.part-00001-5ce125c2-326c-442a-b6f3-d07b08d61d1b-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5186442357439914579.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite5186442357439914579.adam/part-00001-5ce125c2-326c-442a-b6f3-d07b08d61d1b-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite5186442357439914579.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5186442357439914579.adam/.part-00002-5ce125c2-326c-442a-b6f3-d07b08d61d1b-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5186442357439914579.adam/part-00002-5ce125c2-326c-442a-b6f3-d07b08d61d1b-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite5186442357439914579.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5186442357439914579.adam/_header
/tmp/adamTestMvnp6vi9tr/TempSuite4797366273947967812.adam
/tmp/adamTestMvnp6vi9tr/TempSuite4797366273947967812.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite4797366273947967812.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4797366273947967812.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite4797366273947967812.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite4797366273947967812.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4797366273947967812.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4797366273947967812.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite4797366273947967812.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite4797366273947967812.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4797366273947967812.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4797366273947967812.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4797366273947967812.adam/_header
/tmp/adamTestMvnp6vi9tr/TempSuite1473408429152128149.sam
/tmp/adamTestMvnp6vi9tr/TempSuite5942676900371825932
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite2460268340097465485
/tmp/adamTestMvnp6vi9tr/7413053737340901848
/tmp/adamTestMvnp6vi9tr/7413053737340901848/ordered.sam
/tmp/adamTestMvnp6vi9tr/7413053737340901848/.ordered.sam.crc
/tmp/adamTestMvnp6vi9tr/trinity.fa1292814502864971785.fa
/tmp/adamTestMvnp6vi9tr/TempSuite5743425212739346109reads12.sam
/tmp/adamTestMvnp6vi9tr/TempSuite8775549862236868945.adam
/tmp/adamTestMvnp6vi9tr/TempSuite8775549862236868945.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite8775549862236868945.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite8775549862236868945.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8775549862236868945.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8775549862236868945.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite8775549862236868945.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite8775549862236868945.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8775549862236868945.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite8775549862236868945.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8775549862236868945.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite8775549862236868945.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8775549862236868945.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite8775549862236868945.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/TempSuite8775549862236868945.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8775549862236868945.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite8775549862236868945.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8775549862236868945.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8775549862236868945.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2982355743745637622
/tmp/adamTestMvnp6vi9tr/552312629499338440
/tmp/adamTestMvnp6vi9tr/552312629499338440/coverage.adam
/tmp/adamTestMvnp6vi9tr/552312629499338440/coverage.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/552312629499338440/coverage.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/552312629499338440/coverage.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/552312629499338440/coverage.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/552312629499338440/coverage.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/552312629499338440/coverage.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/552312629499338440/coverage.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/552312629499338440/coverage.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/552312629499338440/coverage.adam/_metadata
/tmp/adamTestMvnp6vi9tr/552312629499338440/coverage.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/552312629499338440/coverage.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/552312629499338440/coverage.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite995815757067614064.adam
/tmp/adamTestMvnp6vi9tr/TempSuite995815757067614064.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite995815757067614064.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite995815757067614064.adam/part-00000-f5549df5-585a-4944-8d5b-cd1417bc32ca-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite995815757067614064.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite995815757067614064.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite995815757067614064.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite995815757067614064.adam/_header
/tmp/adamTestMvnp6vi9tr/TempSuite995815757067614064.adam/.part-00000-f5549df5-585a-4944-8d5b-cd1417bc32ca-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite1256135696899291466.adam
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite1256135696899291466.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite1256135696899291466.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite1256135696899291466.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite1256135696899291466.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite1256135696899291466.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite1256135696899291466.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite1256135696899291466.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite1256135696899291466.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite1256135696899291466.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite1256135696899291466.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite1256135696899291466.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite1256135696899291466.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite1256135696899291466.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite1256135696899291466.adam/_metadata
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite1256135696899291466.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite1256135696899291466.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite394814934888691272
/tmp/adamTestMvnp6vi9tr/reads128599441770008966550
/tmp/adamTestMvnp6vi9tr/reads128599441770008966550/reads12.sam
/tmp/adamTestMvnp6vi9tr/reads128599441770008966550/reads12.sam/part-r-00000.sam
/tmp/adamTestMvnp6vi9tr/reads128599441770008966550/reads12.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnp6vi9tr/reads128599441770008966550/reads12.sam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/reads128599441770008966550/reads12.sam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7043533191489276538
/tmp/adamTestMvnp6vi9tr/TempSuite3989445448121712567
/tmp/adamTestMvnp6vi9tr/TempSuite1562631585291142788
/tmp/adamTestMvnp6vi9tr/TempSuite8728127048588163485
/tmp/adamTestMvnp6vi9tr/javaAC7898995688030329524
/tmp/adamTestMvnp6vi9tr/javaAC7898995688030329524/testRdd.genotype.adam
/tmp/adamTestMvnp6vi9tr/javaAC7898995688030329524/testRdd.genotype.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/javaAC7898995688030329524/testRdd.genotype.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/javaAC7898995688030329524/testRdd.genotype.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/javaAC7898995688030329524/testRdd.genotype.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/javaAC7898995688030329524/testRdd.genotype.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/javaAC7898995688030329524/testRdd.genotype.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/javaAC7898995688030329524/testRdd.genotype.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/javaAC7898995688030329524/testRdd.genotype.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/javaAC7898995688030329524/testRdd.genotype.adam/_metadata
/tmp/adamTestMvnp6vi9tr/javaAC7898995688030329524/testRdd.genotype.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/javaAC7898995688030329524/testRdd.genotype.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/javaAC7898995688030329524/testRdd.genotype.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/javaAC7898995688030329524/testRdd.genotype.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/javaAC7898995688030329524/testRdd.genotype.adam/_header
/tmp/adamTestMvnp6vi9tr/3215438125125881978
/tmp/adamTestMvnp6vi9tr/3215438125125881978/ordered.sam
/tmp/adamTestMvnp6vi9tr/3215438125125881978/.ordered.sam.crc
/tmp/adamTestMvnp6vi9tr/TempSuite257751458947788873.bed
/tmp/adamTestMvnp6vi9tr/TempSuite257751458947788873.bed/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/TempSuite257751458947788873.bed/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite257751458947788873.bed/part-00000
/tmp/adamTestMvnp6vi9tr/TempSuite257751458947788873.bed/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4615381507560257674
/tmp/adamTestMvnp6vi9tr/TempSuite266871060368912198
/tmp/adamTestMvnp6vi9tr/TempSuite4222728576828115549
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite1006712531631524833
/tmp/adamTestMvnp6vi9tr/TempSuite2058672449589150770
/tmp/adamTestMvnp6vi9tr/TempSuite7728783544143978074
/tmp/adamTestMvnp6vi9tr/sample_coverage.bed8221080892893690557.bed
/tmp/adamTestMvnp6vi9tr/TempSuite7466471320419725363.bed
/tmp/adamTestMvnp6vi9tr/TempSuite7466471320419725363.bed/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7466471320419725363.bed/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite7466471320419725363.bed/part-00000
/tmp/adamTestMvnp6vi9tr/TempSuite7466471320419725363.bed/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4851424977032712138.bed
/tmp/adamTestMvnp6vi9tr/TempSuite6058914515220699462
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite6709517153239300130
/tmp/adamTestMvnp6vi9tr/TempSuite1034040460008801239.fa
/tmp/adamTestMvnp6vi9tr/TempSuite1034040460008801239.fa/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1034040460008801239.fa/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite1034040460008801239.fa/part-00000
/tmp/adamTestMvnp6vi9tr/TempSuite1034040460008801239.fa/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7894617895127659756.bed
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7894617895127659756.bed/.part-00003.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7894617895127659756.bed/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7894617895127659756.bed/_SUCCESS
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7894617895127659756.bed/part-00003
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7894617895127659756.bed/part-00000
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7894617895127659756.bed/part-00002
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7894617895127659756.bed/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7894617895127659756.bed/.part-00002.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7894617895127659756.bed/part-00001
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7894617895127659756.bed/.part-00001.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2065186746419121440.adam
/tmp/adamTestMvnp6vi9tr/TempSuite2065186746419121440.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite2065186746419121440.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2065186746419121440.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2065186746419121440.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/TempSuite2065186746419121440.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite2065186746419121440.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/TempSuite2065186746419121440.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite2065186746419121440.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2065186746419121440.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2065186746419121440.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite2065186746419121440.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite2065186746419121440.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2065186746419121440.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2065186746419121440.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7261448278137365606
/tmp/adamTestMvnp6vi9tr/.FeatureDatasetFunctionsSuite5132378738904802427.interval_list.crc
/tmp/adamTestMvnp6vi9tr/ordered.sam5861098924181047877.sam
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite971042307642165320.bed
/tmp/adamTestMvnp6vi9tr/TempSuite968174356735686533
/tmp/adamTestMvnp6vi9tr/TempSuite8933552948786600033
/tmp/adamTestMvnp6vi9tr/TempSuite4897004941108249686
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4851424977032712138
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite6194484818593585814.bed
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite6194484818593585814.bed/.part-00003.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite6194484818593585814.bed/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite6194484818593585814.bed/_SUCCESS
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite6194484818593585814.bed/part-00003
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite6194484818593585814.bed/part-00000
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite6194484818593585814.bed/part-00002
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite6194484818593585814.bed/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite6194484818593585814.bed/.part-00002.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite6194484818593585814.bed/part-00001
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite6194484818593585814.bed/.part-00001.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1875809907862982615.adam
/tmp/adamTestMvnp6vi9tr/TempSuite1875809907862982615.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1875809907862982615.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite1875809907862982615.adam/part-00000-665d3302-2086-435b-86ac-44fc03e2ce51-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite1875809907862982615.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite1875809907862982615.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1875809907862982615.adam/.part-00000-665d3302-2086-435b-86ac-44fc03e2ce51-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1875809907862982615.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1875809907862982615.adam/_header
/tmp/adamTestMvnp6vi9tr/TempSuite8325873512100056445.adam
/tmp/adamTestMvnp6vi9tr/TempSuite8325873512100056445.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite8325873512100056445.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8325873512100056445.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8325873512100056445.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/TempSuite8325873512100056445.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite8325873512100056445.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/TempSuite8325873512100056445.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite8325873512100056445.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8325873512100056445.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8325873512100056445.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite8325873512100056445.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite8325873512100056445.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8325873512100056445.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8325873512100056445.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4953498484358532502.adam
/tmp/adamTestMvnp6vi9tr/TempSuite4953498484358532502.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite4953498484358532502.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4953498484358532502.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite4953498484358532502.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite4953498484358532502.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4953498484358532502.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4953498484358532502.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite4953498484358532502.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/TempSuite4953498484358532502.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite4953498484358532502.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4953498484358532502.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4953498484358532502.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4953498484358532502.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4953498484358532502.adam/_header
/tmp/adamTestMvnp6vi9tr/small.vcf8548030483178385900.vcf
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite4287790069235834162.adam
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite4287790069235834162.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite4287790069235834162.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite4287790069235834162.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite4287790069235834162.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite4287790069235834162.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite4287790069235834162.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite4287790069235834162.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite4287790069235834162.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite4287790069235834162.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite4287790069235834162.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite4287790069235834162.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite4287790069235834162.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite4287790069235834162.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite4287790069235834162.adam/_metadata
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite4287790069235834162.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite4287790069235834162.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5524108689765058947
/tmp/adamTestMvnp6vi9tr/TempSuite3919975513584782022.adam
/tmp/adamTestMvnp6vi9tr/TempSuite3919975513584782022.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3919975513584782022.adam/part-00000-e895cf5a-755f-4d68-880a-35d3d36cb6fa-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite3919975513584782022.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3919975513584782022.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/TempSuite3919975513584782022.adam/.part-00000-e895cf5a-755f-4d68-880a-35d3d36cb6fa-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3919975513584782022.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/TempSuite3919975513584782022.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite3919975513584782022.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite3919975513584782022.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3919975513584782022.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite774712285022268297.adam
/tmp/adamTestMvnp6vi9tr/TempSuite774712285022268297.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite774712285022268297.adam/part-00000-dbd7f258-b535-4e27-9361-86faabc65456-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite774712285022268297.adam/.part-00000-dbd7f258-b535-4e27-9361-86faabc65456-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite774712285022268297.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite774712285022268297.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite774712285022268297.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/TempSuite774712285022268297.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite774712285022268297.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite774712285022268297.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite774712285022268297.adam/_header
/tmp/adamTestMvnp6vi9tr/TempSuite5327568692522014251
/tmp/adamTestMvnp6vi9tr/small.vcf3768741887718068248.vcf
/tmp/adamTestMvnp6vi9tr/TempSuite3553198776271155492.adam
/tmp/adamTestMvnp6vi9tr/TempSuite3553198776271155492.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite3553198776271155492.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3553198776271155492.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite3553198776271155492.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite3553198776271155492.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3553198776271155492.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3553198776271155492.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite3553198776271155492.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite3553198776271155492.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3553198776271155492.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/reads8798315109839784860
/tmp/adamTestMvnp6vi9tr/reads8798315109839784860/reads1.fq
/tmp/adamTestMvnp6vi9tr/reads8798315109839784860/reads1.fq/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/reads8798315109839784860/reads1.fq/_SUCCESS
/tmp/adamTestMvnp6vi9tr/reads8798315109839784860/reads1.fq/part-00000
/tmp/adamTestMvnp6vi9tr/reads8798315109839784860/reads1.fq/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/reads8798315109839784860/reads2.fq
/tmp/adamTestMvnp6vi9tr/reads8798315109839784860/reads2.fq/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/reads8798315109839784860/reads2.fq/_SUCCESS
/tmp/adamTestMvnp6vi9tr/reads8798315109839784860/reads2.fq/part-00000
/tmp/adamTestMvnp6vi9tr/reads8798315109839784860/reads2.fq/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite850201206975446534
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite1465760477942538027.gtf
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite1465760477942538027.gtf/.part-00003.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite1465760477942538027.gtf/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite1465760477942538027.gtf/_SUCCESS
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite1465760477942538027.gtf/part-00003
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite1465760477942538027.gtf/part-00000
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite1465760477942538027.gtf/part-00002
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite1465760477942538027.gtf/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite1465760477942538027.gtf/.part-00002.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite1465760477942538027.gtf/part-00001
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite1465760477942538027.gtf/.part-00001.crc
/tmp/adamTestMvnp6vi9tr/TempSuite950504593685200722.adam
/tmp/adamTestMvnp6vi9tr/TempSuite950504593685200722.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite950504593685200722.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite950504593685200722.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite950504593685200722.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite950504593685200722.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite950504593685200722.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/TempSuite950504593685200722.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite950504593685200722.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/TempSuite950504593685200722.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite950504593685200722.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite950504593685200722.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite950504593685200722.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite950504593685200722.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite950504593685200722.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite950504593685200722.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite950504593685200722.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite950504593685200722.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite950504593685200722.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite950504593685200722.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite950504593685200722.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2632417817530378851
/tmp/adamTestMvnp6vi9tr/TempSuite4491085127870797814
/tmp/adamTestMvnp6vi9tr/TempSuite4499857448659752310.adam
/tmp/adamTestMvnp6vi9tr/TempSuite4499857448659752310.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite4499857448659752310.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4499857448659752310.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite4499857448659752310.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite4499857448659752310.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4499857448659752310.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4499857448659752310.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite4499857448659752310.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite4499857448659752310.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4499857448659752310.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4499857448659752310.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4499857448659752310.adam/_header
/tmp/adamTestMvnp6vi9tr/TempSuite7337224627714644659
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite1006712531631524833.bed
/tmp/adamTestMvnp6vi9tr/TempSuite2114913566499922498
/tmp/adamTestMvnp6vi9tr/.SequenceDatasetSuite6683185573434484577.fasta.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4985874277185164714
/tmp/adamTestMvnp6vi9tr/TempSuite2253090006734088128
/tmp/adamTestMvnp6vi9tr/TempSuite2114913566499922498.adam
/tmp/adamTestMvnp6vi9tr/TempSuite2114913566499922498.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite2114913566499922498.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2114913566499922498.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2114913566499922498.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/TempSuite2114913566499922498.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite2114913566499922498.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/TempSuite2114913566499922498.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite2114913566499922498.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2114913566499922498.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2114913566499922498.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite2114913566499922498.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite2114913566499922498.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2114913566499922498.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2114913566499922498.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite144276835327553196
/tmp/adamTestMvnp6vi9tr/TempSuite2326014299766758681.adam
/tmp/adamTestMvnp6vi9tr/TempSuite2326014299766758681.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite2326014299766758681.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2326014299766758681.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite2326014299766758681.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite2326014299766758681.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2326014299766758681.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2326014299766758681.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite2326014299766758681.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/TempSuite2326014299766758681.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite2326014299766758681.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2326014299766758681.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2326014299766758681.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2326014299766758681.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2326014299766758681.adam/_header
/tmp/adamTestMvnp6vi9tr/TempSuite7358218930466009141
/tmp/adamTestMvnp6vi9tr/TempSuite3631378894408778034.adam
/tmp/adamTestMvnp6vi9tr/TempSuite3631378894408778034.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite3631378894408778034.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3631378894408778034.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3631378894408778034.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/TempSuite3631378894408778034.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite3631378894408778034.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/TempSuite3631378894408778034.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite3631378894408778034.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3631378894408778034.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3631378894408778034.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite3631378894408778034.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite3631378894408778034.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3631378894408778034.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3631378894408778034.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite6177602036989975654.fastq
/tmp/adamTestMvnp6vi9tr/TempSuite7186382322142781209
/tmp/adamTestMvnp6vi9tr/TempSuite822909633722509136
/tmp/adamTestMvnp6vi9tr/small.sam7082862586215726435.sam
/tmp/adamTestMvnp6vi9tr/.SequenceDatasetSuite3975244108371464907.fasta.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5252928579244436893
/tmp/adamTestMvnp6vi9tr/TempSuite2065186746419121440
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite8633910103587836114.bed
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite8633910103587836114.bed/.part-00003.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite8633910103587836114.bed/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite8633910103587836114.bed/_SUCCESS
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite8633910103587836114.bed/part-00003
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite8633910103587836114.bed/part-00000
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite8633910103587836114.bed/part-00002
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite8633910103587836114.bed/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite8633910103587836114.bed/.part-00002.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite8633910103587836114.bed/part-00001
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite8633910103587836114.bed/.part-00001.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5446368902670588340
/tmp/adamTestMvnp6vi9tr/TempSuite5387717626718934800.adam
/tmp/adamTestMvnp6vi9tr/TempSuite5387717626718934800.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5387717626718934800.adam/.part-00001-88b00d04-94f8-440f-b0ca-7ae52d378342-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5387717626718934800.adam/.part-00002-88b00d04-94f8-440f-b0ca-7ae52d378342-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5387717626718934800.adam/part-00002-88b00d04-94f8-440f-b0ca-7ae52d378342-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite5387717626718934800.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite5387717626718934800.adam/.part-00000-88b00d04-94f8-440f-b0ca-7ae52d378342-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5387717626718934800.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite5387717626718934800.adam/part-00000-88b00d04-94f8-440f-b0ca-7ae52d378342-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite5387717626718934800.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/TempSuite5387717626718934800.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5387717626718934800.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5387717626718934800.adam/part-00001-88b00d04-94f8-440f-b0ca-7ae52d378342-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/6925848333059192866
/tmp/adamTestMvnp6vi9tr/6925848333059192866/out.cram_tail
/tmp/adamTestMvnp6vi9tr/6925848333059192866/out.cram_tail/.part-r-00003.cram.crc
/tmp/adamTestMvnp6vi9tr/6925848333059192866/out.cram_tail/.part-r-00001.cram.crc
/tmp/adamTestMvnp6vi9tr/6925848333059192866/out.cram_tail/_SUCCESS
/tmp/adamTestMvnp6vi9tr/6925848333059192866/out.cram_tail/.part-r-00000.cram.crc
/tmp/adamTestMvnp6vi9tr/6925848333059192866/out.cram_tail/part-r-00003.cram
/tmp/adamTestMvnp6vi9tr/6925848333059192866/out.cram_tail/part-r-00000.cram
/tmp/adamTestMvnp6vi9tr/6925848333059192866/out.cram_tail/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/6925848333059192866/out.cram_tail/part-r-00002.cram
/tmp/adamTestMvnp6vi9tr/6925848333059192866/out.cram_tail/part-r-00001.cram
/tmp/adamTestMvnp6vi9tr/6925848333059192866/out.cram_tail/.part-r-00002.cram.crc
/tmp/adamTestMvnp6vi9tr/6925848333059192866/.out.cram.crc
/tmp/adamTestMvnp6vi9tr/6925848333059192866/out.cram_head
/tmp/adamTestMvnp6vi9tr/6925848333059192866/.out.cram_head.crc
/tmp/adamTestMvnp6vi9tr/6925848333059192866/out.cram
/tmp/adamTestMvnp6vi9tr/TempSuite4643879697775620968
/tmp/adamTestMvnp6vi9tr/498104967019437017
/tmp/adamTestMvnp6vi9tr/498104967019437017/sorted.vcf
/tmp/adamTestMvnp6vi9tr/498104967019437017/.sorted.vcf.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2397630669088588536
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite6194484818593585814
/tmp/adamTestMvnp6vi9tr/TempSuite3278169525508374241
/tmp/adamTestMvnp6vi9tr/TempSuite3785532726340821469
/tmp/adamTestMvnp6vi9tr/TempSuite4860325039068178339.adam
/tmp/adamTestMvnp6vi9tr/TempSuite4860325039068178339.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite4860325039068178339.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4860325039068178339.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite4860325039068178339.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite4860325039068178339.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4860325039068178339.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4860325039068178339.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite4860325039068178339.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/TempSuite4860325039068178339.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite4860325039068178339.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4860325039068178339.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4860325039068178339.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4860325039068178339.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4860325039068178339.adam/_header
/tmp/adamTestMvnp6vi9tr/TempSuite6858897036586784852
/tmp/adamTestMvnp6vi9tr/8250967341366183473
/tmp/adamTestMvnp6vi9tr/8250967341366183473/genotypes.adam
/tmp/adamTestMvnp6vi9tr/8250967341366183473/genotypes.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/8250967341366183473/genotypes.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/8250967341366183473/genotypes.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/8250967341366183473/genotypes.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/8250967341366183473/genotypes.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/8250967341366183473/genotypes.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/8250967341366183473/genotypes.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/8250967341366183473/genotypes.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/8250967341366183473/genotypes.adam/_metadata
/tmp/adamTestMvnp6vi9tr/8250967341366183473/genotypes.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/8250967341366183473/genotypes.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/8250967341366183473/genotypes.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/8250967341366183473/genotypes.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/8250967341366183473/genotypes.adam/_header
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite5077441926135758810.gtf
/tmp/adamTestMvnp6vi9tr/TempSuite2167056365490006944.sam
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7618960274275388769
/tmp/adamTestMvnp6vi9tr/small.vcf6480635977555261341.vcf
/tmp/adamTestMvnp6vi9tr/TempSuite7906693463585665234.bed
/tmp/adamTestMvnp6vi9tr/TempSuite7906693463585665234.bed/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7906693463585665234.bed/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite7906693463585665234.bed/part-00000
/tmp/adamTestMvnp6vi9tr/TempSuite7906693463585665234.bed/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite992962583949262984
/tmp/adamTestMvnp6vi9tr/TempSuite4897004941108249686.adam
/tmp/adamTestMvnp6vi9tr/TempSuite4897004941108249686.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite4897004941108249686.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4897004941108249686.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4897004941108249686.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/TempSuite4897004941108249686.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite4897004941108249686.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/TempSuite4897004941108249686.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite4897004941108249686.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4897004941108249686.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4897004941108249686.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite4897004941108249686.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite4897004941108249686.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4897004941108249686.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4897004941108249686.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2050232594483918635
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite2450347806589318367.adam
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite2450347806589318367.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite2450347806589318367.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite2450347806589318367.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite2450347806589318367.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite2450347806589318367.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite2450347806589318367.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite2450347806589318367.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite2450347806589318367.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite2450347806589318367.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite2450347806589318367.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite2450347806589318367.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite2450347806589318367.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite2450347806589318367.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite2450347806589318367.adam/_metadata
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite2450347806589318367.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite2450347806589318367.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7237752872774906456.adam
/tmp/adamTestMvnp6vi9tr/TempSuite7237752872774906456.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7237752872774906456.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite7237752872774906456.adam/.part-00000-975c2369-f12f-4b0a-beed-91dfc2e28301-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7237752872774906456.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite7237752872774906456.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/TempSuite7237752872774906456.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7237752872774906456.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7237752872774906456.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7237752872774906456.adam/part-00000-975c2369-f12f-4b0a-beed-91dfc2e28301-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite7237752872774906456.adam/_header
/tmp/adamTestMvnp6vi9tr/TempSuite5416236487025736780.adam
/tmp/adamTestMvnp6vi9tr/TempSuite5416236487025736780.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5416236487025736780.adam/part-00000-f1fe5d2f-73f7-4547-b1d2-24803a046204-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite5416236487025736780.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite5416236487025736780.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite5416236487025736780.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5416236487025736780.adam/.part-00000-f1fe5d2f-73f7-4547-b1d2-24803a046204-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5387717626718934800
/tmp/adamTestMvnp6vi9tr/TempSuite7043533191489276538.sam
/tmp/adamTestMvnp6vi9tr/TempSuite8933552948786600033.adam
/tmp/adamTestMvnp6vi9tr/TempSuite8933552948786600033.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite8933552948786600033.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite8933552948786600033.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8933552948786600033.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8933552948786600033.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8933552948786600033.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/TempSuite8933552948786600033.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite8933552948786600033.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/TempSuite8933552948786600033.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite8933552948786600033.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8933552948786600033.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite8933552948786600033.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8933552948786600033.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite8933552948786600033.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8933552948786600033.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite8933552948786600033.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8933552948786600033.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite8933552948786600033.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8933552948786600033.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8933552948786600033.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5445467135304389295.adam
/tmp/adamTestMvnp6vi9tr/TempSuite5445467135304389295.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite5445467135304389295.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5445467135304389295.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite5445467135304389295.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite5445467135304389295.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5445467135304389295.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5445467135304389295.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite5445467135304389295.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite5445467135304389295.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5445467135304389295.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5445467135304389295.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5445467135304389295.adam/_header
/tmp/adamTestMvnp6vi9tr/TempSuite1463874085668720866
/tmp/adamTestMvnp6vi9tr/TempSuite7798381931374707398.2.adam
/tmp/adamTestMvnp6vi9tr/TempSuite7798381931374707398.2.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite7798381931374707398.2.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7798381931374707398.2.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7798381931374707398.2.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/TempSuite7798381931374707398.2.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite7798381931374707398.2.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/TempSuite7798381931374707398.2.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite7798381931374707398.2.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7798381931374707398.2.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7798381931374707398.2.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite7798381931374707398.2.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite7798381931374707398.2.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7798381931374707398.2.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7798381931374707398.2.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4701962412691370053
/tmp/adamTestMvnp6vi9tr/TempSuite2845016163270811608
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite151961379759889580
/tmp/adamTestMvnp6vi9tr/TempSuite2422932154140067874.adam
/tmp/adamTestMvnp6vi9tr/TempSuite2422932154140067874.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite2422932154140067874.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2422932154140067874.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite2422932154140067874.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite2422932154140067874.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2422932154140067874.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2422932154140067874.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite2422932154140067874.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/TempSuite2422932154140067874.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite2422932154140067874.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2422932154140067874.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2422932154140067874.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2422932154140067874.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2422932154140067874.adam/_header
/tmp/adamTestMvnp6vi9tr/TempSuite6231704382382810225.fq
/tmp/adamTestMvnp6vi9tr/TempSuite6231704382382810225.fq/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6231704382382810225.fq/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite6231704382382810225.fq/part-00000
/tmp/adamTestMvnp6vi9tr/TempSuite6231704382382810225.fq/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite2192863457810638589.adam
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite2192863457810638589.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite2192863457810638589.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite2192863457810638589.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite2192863457810638589.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite2192863457810638589.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite2192863457810638589.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite2192863457810638589.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite2192863457810638589.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite2192863457810638589.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite2192863457810638589.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite2192863457810638589.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite2192863457810638589.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite2192863457810638589.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite2192863457810638589.adam/_metadata
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite2192863457810638589.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite2192863457810638589.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/unordered.sam7941821150669112281.sam
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite3176066554659541061.narrowPeak
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite3176066554659541061.narrowPeak/.part-00003.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite3176066554659541061.narrowPeak/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite3176066554659541061.narrowPeak/_SUCCESS
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite3176066554659541061.narrowPeak/part-00003
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite3176066554659541061.narrowPeak/part-00000
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite3176066554659541061.narrowPeak/part-00002
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite3176066554659541061.narrowPeak/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite3176066554659541061.narrowPeak/.part-00002.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite3176066554659541061.narrowPeak/part-00001
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite3176066554659541061.narrowPeak/.part-00001.crc
/tmp/adamTestMvnp6vi9tr/javaAC7399898196708111093
/tmp/adamTestMvnp6vi9tr/javaAC7399898196708111093/testRdd.coverage.adam
/tmp/adamTestMvnp6vi9tr/javaAC7399898196708111093/testRdd.coverage.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/javaAC7399898196708111093/testRdd.coverage.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnp6vi9tr/javaAC7399898196708111093/testRdd.coverage.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/javaAC7399898196708111093/testRdd.coverage.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/javaAC7399898196708111093/testRdd.coverage.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/javaAC7399898196708111093/testRdd.coverage.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/javaAC7399898196708111093/testRdd.coverage.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/javaAC7399898196708111093/testRdd.coverage.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnp6vi9tr/javaAC7399898196708111093/testRdd.coverage.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/javaAC7399898196708111093/testRdd.coverage.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnp6vi9tr/javaAC7399898196708111093/testRdd.coverage.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/javaAC7399898196708111093/testRdd.coverage.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/javaAC7399898196708111093/testRdd.coverage.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/javaAC7399898196708111093/testRdd.coverage.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/javaAC7399898196708111093/testRdd.coverage.adam/_metadata
/tmp/adamTestMvnp6vi9tr/javaAC7399898196708111093/testRdd.coverage.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/javaAC7399898196708111093/testRdd.coverage.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/javaAC7399898196708111093/testRdd.coverage.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite599687314120163786.adam
/tmp/adamTestMvnp6vi9tr/TempSuite599687314120163786.adam/.part-00000-697b430c-42d7-42ca-b660-baafbf24bf77-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite599687314120163786.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite599687314120163786.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite599687314120163786.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite599687314120163786.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/TempSuite599687314120163786.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite599687314120163786.adam/part-00000-697b430c-42d7-42ca-b660-baafbf24bf77-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite599687314120163786.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite599687314120163786.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite599687314120163786.adam/_header
/tmp/adamTestMvnp6vi9tr/TempSuite8413355849023256214.adam
/tmp/adamTestMvnp6vi9tr/TempSuite8413355849023256214.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite8413355849023256214.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8413355849023256214.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite8413355849023256214.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite8413355849023256214.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8413355849023256214.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8413355849023256214.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite8413355849023256214.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/TempSuite8413355849023256214.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite8413355849023256214.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8413355849023256214.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8413355849023256214.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8413355849023256214.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8413355849023256214.adam/_header
/tmp/adamTestMvnp6vi9tr/TempSuite5335723469532278322
/tmp/adamTestMvnp6vi9tr/TempSuite4491085127870797814.adam
/tmp/adamTestMvnp6vi9tr/TempSuite4491085127870797814.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4491085127870797814.adam/.part-00000-91c6a946-18fe-4cd0-9f6c-86d976bed3f6-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4491085127870797814.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4491085127870797814.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/TempSuite4491085127870797814.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/TempSuite4491085127870797814.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite4491085127870797814.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite4491085127870797814.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4491085127870797814.adam/part-00000-91c6a946-18fe-4cd0-9f6c-86d976bed3f6-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite4491085127870797814.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6901241104315779522
/tmp/adamTestMvnp6vi9tr/TempSuite4015970437123897577.sam
/tmp/adamTestMvnp6vi9tr/TempSuite4015970437123897577.sam/part-r-00000.sam
/tmp/adamTestMvnp6vi9tr/TempSuite4015970437123897577.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4015970437123897577.sam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite4015970437123897577.sam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite557956213877608680
/tmp/adamTestMvnp6vi9tr/.FeatureDatasetFunctionsSuite81852972370727914.narrowPeak.crc
/tmp/adamTestMvnp6vi9tr/.TempSuite2493874423675201172.bam.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite81852972370727914
/tmp/adamTestMvnp6vi9tr/TempSuite298003135151145281.bed
/tmp/adamTestMvnp6vi9tr/TempSuite298003135151145281.bed/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/TempSuite298003135151145281.bed/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite298003135151145281.bed/part-00000
/tmp/adamTestMvnp6vi9tr/TempSuite298003135151145281.bed/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4960481782653828197.bed
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4960481782653828197.bed/.part-00003.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4960481782653828197.bed/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4960481782653828197.bed/_SUCCESS
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4960481782653828197.bed/part-00003
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4960481782653828197.bed/part-00000
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4960481782653828197.bed/part-00002
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4960481782653828197.bed/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4960481782653828197.bed/.part-00002.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4960481782653828197.bed/part-00001
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4960481782653828197.bed/.part-00001.crc
/tmp/adamTestMvnp6vi9tr/bqsr1.sam5429011924511620224.sam
/tmp/adamTestMvnp6vi9tr/TempSuite8361032342125043972.bed
/tmp/adamTestMvnp6vi9tr/TempSuite8361032342125043972.bed/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8361032342125043972.bed/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite8361032342125043972.bed/part-00000
/tmp/adamTestMvnp6vi9tr/TempSuite8361032342125043972.bed/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/560135725587127270
/tmp/adamTestMvnp6vi9tr/560135725587127270/binned.adam
/tmp/adamTestMvnp6vi9tr/560135725587127270/binned.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/560135725587127270/binned.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/560135725587127270/binned.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/560135725587127270/binned.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/560135725587127270/binned.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/560135725587127270/binned.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/560135725587127270/binned.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/560135725587127270/binned.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/560135725587127270/binned.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/560135725587127270/binned.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/560135725587127270/binned.adam/_metadata
/tmp/adamTestMvnp6vi9tr/560135725587127270/binned.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/560135725587127270/binned.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/560135725587127270/binned.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/4219412570926184516
/tmp/adamTestMvnp6vi9tr/4219412570926184516/artificial.cram
/tmp/adamTestMvnp6vi9tr/4219412570926184516/artificial.cram/_SUCCESS
/tmp/adamTestMvnp6vi9tr/4219412570926184516/artificial.cram/.part-r-00000.cram.crc
/tmp/adamTestMvnp6vi9tr/4219412570926184516/artificial.cram/part-r-00000.cram
/tmp/adamTestMvnp6vi9tr/4219412570926184516/artificial.cram/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2681846289982821369
/tmp/adamTestMvnp6vi9tr/TempSuite1915859636160079144
/tmp/adamTestMvnp6vi9tr/344219989649924286
/tmp/adamTestMvnp6vi9tr/344219989649924286/genotypes.lex.adam
/tmp/adamTestMvnp6vi9tr/344219989649924286/genotypes.lex.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/344219989649924286/genotypes.lex.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/344219989649924286/genotypes.lex.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/344219989649924286/genotypes.lex.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/344219989649924286/genotypes.lex.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/344219989649924286/genotypes.lex.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/344219989649924286/genotypes.lex.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/344219989649924286/genotypes.lex.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/344219989649924286/genotypes.lex.adam/_metadata
/tmp/adamTestMvnp6vi9tr/344219989649924286/genotypes.lex.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/344219989649924286/genotypes.lex.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/344219989649924286/genotypes.lex.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/344219989649924286/genotypes.lex.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/344219989649924286/genotypes.lex.adam/_header
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite8964773531636712492
/tmp/adamTestMvnp6vi9tr/TempSuite2811945349886170651
/tmp/adamTestMvnp6vi9tr/TempSuite950504593685200722
/tmp/adamTestMvnp6vi9tr/TempSuite5783277284735372964
/tmp/adamTestMvnp6vi9tr/3992910109241300568
/tmp/adamTestMvnp6vi9tr/3992910109241300568/genotypes.adam
/tmp/adamTestMvnp6vi9tr/3992910109241300568/genotypes.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/3992910109241300568/genotypes.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/3992910109241300568/genotypes.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/3992910109241300568/genotypes.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/3992910109241300568/genotypes.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/3992910109241300568/genotypes.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/3992910109241300568/genotypes.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/3992910109241300568/genotypes.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/3992910109241300568/genotypes.adam/_metadata
/tmp/adamTestMvnp6vi9tr/3992910109241300568/genotypes.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/3992910109241300568/genotypes.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/3992910109241300568/genotypes.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/3992910109241300568/genotypes.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/3992910109241300568/genotypes.adam/_header
/tmp/adamTestMvnp6vi9tr/TempSuite7466471320419725363
/tmp/adamTestMvnp6vi9tr/TempSuite5024198804261861682
/tmp/adamTestMvnp6vi9tr/TempSuite839449800060620000.bam
/tmp/adamTestMvnp6vi9tr/TempSuite839449800060620000.bam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite839449800060620000.bam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite839449800060620000.bam/.part-r-00000.bam.crc
/tmp/adamTestMvnp6vi9tr/TempSuite839449800060620000.bam/part-r-00000.bam
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite393230916688508737
/tmp/adamTestMvnp6vi9tr/TempSuite2111668040739730922.bed
/tmp/adamTestMvnp6vi9tr/TempSuite2111668040739730922.bed/.part-00003.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2111668040739730922.bed/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2111668040739730922.bed/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite2111668040739730922.bed/part-00003
/tmp/adamTestMvnp6vi9tr/TempSuite2111668040739730922.bed/part-00000
/tmp/adamTestMvnp6vi9tr/TempSuite2111668040739730922.bed/part-00002
/tmp/adamTestMvnp6vi9tr/TempSuite2111668040739730922.bed/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2111668040739730922.bed/.part-00002.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2111668040739730922.bed/part-00001
/tmp/adamTestMvnp6vi9tr/TempSuite2111668040739730922.bed/.part-00001.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite113507710383963661.interval_list
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite113507710383963661.interval_list/.part-00003.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite113507710383963661.interval_list/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite113507710383963661.interval_list/_SUCCESS
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite113507710383963661.interval_list/part-00003
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite113507710383963661.interval_list/part-00000
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite113507710383963661.interval_list/part-00002
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite113507710383963661.interval_list/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite113507710383963661.interval_list/.part-00002.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite113507710383963661.interval_list/part-00001
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite113507710383963661.interval_list/.part-00001.crc
/tmp/adamTestMvnp6vi9tr/javaAC7053885188911465943
/tmp/adamTestMvnp6vi9tr/javaAC7053885188911465943/testRdd.variant.adam
/tmp/adamTestMvnp6vi9tr/javaAC7053885188911465943/testRdd.variant.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/javaAC7053885188911465943/testRdd.variant.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/javaAC7053885188911465943/testRdd.variant.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/javaAC7053885188911465943/testRdd.variant.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/javaAC7053885188911465943/testRdd.variant.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/javaAC7053885188911465943/testRdd.variant.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/javaAC7053885188911465943/testRdd.variant.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/javaAC7053885188911465943/testRdd.variant.adam/_metadata
/tmp/adamTestMvnp6vi9tr/javaAC7053885188911465943/testRdd.variant.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/javaAC7053885188911465943/testRdd.variant.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/javaAC7053885188911465943/testRdd.variant.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/javaAC7053885188911465943/testRdd.variant.adam/_header
/tmp/adamTestMvnp6vi9tr/TempSuite4823663574499243272_1.fq
/tmp/adamTestMvnp6vi9tr/1977913454221850342
/tmp/adamTestMvnp6vi9tr/1977913454221850342/unordered.sam
/tmp/adamTestMvnp6vi9tr/1977913454221850342/.unordered.sam.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite8964773531636712492.narrowPeak
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite8964773531636712492.narrowPeak/.part-00003.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite8964773531636712492.narrowPeak/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite8964773531636712492.narrowPeak/_SUCCESS
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite8964773531636712492.narrowPeak/part-00003
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite8964773531636712492.narrowPeak/part-00000
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite8964773531636712492.narrowPeak/part-00002
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite8964773531636712492.narrowPeak/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite8964773531636712492.narrowPeak/.part-00002.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite8964773531636712492.narrowPeak/part-00001
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite8964773531636712492.narrowPeak/.part-00001.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1004695068423240539
/tmp/adamTestMvnp6vi9tr/unordered.sam7791592684939480796.sam
/tmp/adamTestMvnp6vi9tr/adam-cli.TransformFeaturesSuite9017930273715570792.adam
/tmp/adamTestMvnp6vi9tr/adam-cli.TransformFeaturesSuite9017930273715570792.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/adam-cli.TransformFeaturesSuite9017930273715570792.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/adam-cli.TransformFeaturesSuite9017930273715570792.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/adam-cli.TransformFeaturesSuite9017930273715570792.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/adam-cli.TransformFeaturesSuite9017930273715570792.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/adam-cli.TransformFeaturesSuite9017930273715570792.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/adam-cli.TransformFeaturesSuite9017930273715570792.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/adam-cli.TransformFeaturesSuite9017930273715570792.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/adam-cli.TransformFeaturesSuite9017930273715570792.adam/_metadata
/tmp/adamTestMvnp6vi9tr/adam-cli.TransformFeaturesSuite9017930273715570792.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/adam-cli.TransformFeaturesSuite9017930273715570792.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/adam-cli.TransformFeaturesSuite9017930273715570792.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/.TempSuite2167056365490006944.sam.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3400613815574658640.adam
/tmp/adamTestMvnp6vi9tr/TempSuite3400613815574658640.adam/part-00001-7140552a-71cf-4a62-b610-5ce1ccee4a9a-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite3400613815574658640.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3400613815574658640.adam/part-00002-7140552a-71cf-4a62-b610-5ce1ccee4a9a-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite3400613815574658640.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite3400613815574658640.adam/part-00000-7140552a-71cf-4a62-b610-5ce1ccee4a9a-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite3400613815574658640.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite3400613815574658640.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/TempSuite3400613815574658640.adam/.part-00002-7140552a-71cf-4a62-b610-5ce1ccee4a9a-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3400613815574658640.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3400613815574658640.adam/.part-00001-7140552a-71cf-4a62-b610-5ce1ccee4a9a-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3400613815574658640.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3400613815574658640.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3400613815574658640.adam/_header
/tmp/adamTestMvnp6vi9tr/TempSuite3400613815574658640.adam/.part-00000-7140552a-71cf-4a62-b610-5ce1ccee4a9a-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7155354552417680737
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4400416068001007653.gtf
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4400416068001007653.gtf/.part-00003.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4400416068001007653.gtf/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4400416068001007653.gtf/_SUCCESS
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4400416068001007653.gtf/part-00003
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4400416068001007653.gtf/part-00000
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4400416068001007653.gtf/part-00002
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4400416068001007653.gtf/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4400416068001007653.gtf/.part-00002.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4400416068001007653.gtf/part-00001
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4400416068001007653.gtf/.part-00001.crc
/tmp/adamTestMvnp6vi9tr/6698260441348581808
/tmp/adamTestMvnp6vi9tr/6698260441348581808/sorted.vcf
/tmp/adamTestMvnp6vi9tr/6698260441348581808/.sorted.vcf.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1964589944660081331
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite2450347806589318367
/tmp/adamTestMvnp6vi9tr/TempSuite2111668040739730922
/tmp/adamTestMvnp6vi9tr/TempSuite8179587587977208160
/tmp/adamTestMvnp6vi9tr/TempSuite3134589785413026943
/tmp/adamTestMvnp6vi9tr/TempSuite2334433064787590554.adam
/tmp/adamTestMvnp6vi9tr/TempSuite2334433064787590554.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite2334433064787590554.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite2334433064787590554.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2334433064787590554.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2334433064787590554.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite2334433064787590554.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite2334433064787590554.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2334433064787590554.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite2334433064787590554.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2334433064787590554.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite2334433064787590554.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2334433064787590554.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite2334433064787590554.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2334433064787590554.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite2334433064787590554.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2334433064787590554.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/javaAC8323916336743862525
/tmp/adamTestMvnp6vi9tr/javaAC8323916336743862525/testRdd.feature.adam
/tmp/adamTestMvnp6vi9tr/javaAC8323916336743862525/testRdd.feature.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/javaAC8323916336743862525/testRdd.feature.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnp6vi9tr/javaAC8323916336743862525/testRdd.feature.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/javaAC8323916336743862525/testRdd.feature.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/javaAC8323916336743862525/testRdd.feature.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/javaAC8323916336743862525/testRdd.feature.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/javaAC8323916336743862525/testRdd.feature.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/javaAC8323916336743862525/testRdd.feature.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnp6vi9tr/javaAC8323916336743862525/testRdd.feature.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/javaAC8323916336743862525/testRdd.feature.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnp6vi9tr/javaAC8323916336743862525/testRdd.feature.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/javaAC8323916336743862525/testRdd.feature.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/javaAC8323916336743862525/testRdd.feature.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/javaAC8323916336743862525/testRdd.feature.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/javaAC8323916336743862525/testRdd.feature.adam/_metadata
/tmp/adamTestMvnp6vi9tr/javaAC8323916336743862525/testRdd.feature.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/javaAC8323916336743862525/testRdd.feature.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/javaAC8323916336743862525/testRdd.feature.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7945428461910845036_2.fq
/tmp/adamTestMvnp6vi9tr/.ReadDatasetSuite7679849268327084162.fastq.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4182300744034221561.adam
/tmp/adamTestMvnp6vi9tr/TempSuite4182300744034221561.adam/.part-00000-9f9a9da3-f2c7-4195-a8ed-b4d75a1cfc93-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4182300744034221561.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4182300744034221561.adam/part-00001-9f9a9da3-f2c7-4195-a8ed-b4d75a1cfc93-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite4182300744034221561.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite4182300744034221561.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite4182300744034221561.adam/.part-00001-9f9a9da3-f2c7-4195-a8ed-b4d75a1cfc93-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4182300744034221561.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4182300744034221561.adam/part-00000-9f9a9da3-f2c7-4195-a8ed-b4d75a1cfc93-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite4182300744034221561.adam/part-00002-9f9a9da3-f2c7-4195-a8ed-b4d75a1cfc93-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite4182300744034221561.adam/.part-00002-9f9a9da3-f2c7-4195-a8ed-b4d75a1cfc93-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/.SliceDatasetSuite4045879464584384003.fasta.crc
/tmp/adamTestMvnp6vi9tr/3206262695652379612
/tmp/adamTestMvnp6vi9tr/3206262695652379612/binned.adam
/tmp/adamTestMvnp6vi9tr/3206262695652379612/binned.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/3206262695652379612/binned.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/3206262695652379612/binned.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/3206262695652379612/binned.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/3206262695652379612/binned.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/3206262695652379612/binned.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/3206262695652379612/binned.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/3206262695652379612/binned.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/3206262695652379612/binned.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/3206262695652379612/binned.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/3206262695652379612/binned.adam/_metadata
/tmp/adamTestMvnp6vi9tr/3206262695652379612/binned.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/3206262695652379612/binned.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/3206262695652379612/binned.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/hg19.chrM.2bit4766036853060404555.chrM.2bit
/tmp/adamTestMvnp6vi9tr/TempSuite6445734756453148664.bed
/tmp/adamTestMvnp6vi9tr/TempSuite6445734756453148664.bed/.part-00003.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6445734756453148664.bed/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6445734756453148664.bed/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite6445734756453148664.bed/part-00003
/tmp/adamTestMvnp6vi9tr/TempSuite6445734756453148664.bed/part-00000
/tmp/adamTestMvnp6vi9tr/TempSuite6445734756453148664.bed/part-00002
/tmp/adamTestMvnp6vi9tr/TempSuite6445734756453148664.bed/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6445734756453148664.bed/.part-00002.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6445734756453148664.bed/part-00001
/tmp/adamTestMvnp6vi9tr/TempSuite6445734756453148664.bed/.part-00001.crc
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite1208052739707859293.fasta
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite1208052739707859293.fasta/.part-00003.crc
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite1208052739707859293.fasta/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite1208052739707859293.fasta/_SUCCESS
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite1208052739707859293.fasta/part-00003
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite1208052739707859293.fasta/part-00000
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite1208052739707859293.fasta/part-00002
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite1208052739707859293.fasta/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite1208052739707859293.fasta/.part-00002.crc
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite1208052739707859293.fasta/part-00001
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite1208052739707859293.fasta/.part-00001.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2910710121447988690
/tmp/adamTestMvnp6vi9tr/bqsr18451857501161762441
/tmp/adamTestMvnp6vi9tr/bqsr18451857501161762441/bqsr1.bam
/tmp/adamTestMvnp6vi9tr/bqsr18451857501161762441/.bqsr1.bam.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7109618211641472649
/tmp/adamTestMvnp6vi9tr/TempSuite7665808867357442155.adam
/tmp/adamTestMvnp6vi9tr/TempSuite7665808867357442155.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite7665808867357442155.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite7665808867357442155.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7665808867357442155.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7665808867357442155.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite7665808867357442155.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite7665808867357442155.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7665808867357442155.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite7665808867357442155.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7665808867357442155.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite7665808867357442155.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7665808867357442155.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite7665808867357442155.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/TempSuite7665808867357442155.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7665808867357442155.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite7665808867357442155.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7665808867357442155.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7665808867357442155.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7665808867357442155.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7665808867357442155.adam/_header
/tmp/adamTestMvnp6vi9tr/TempSuite7168713476675100321.fq
/tmp/adamTestMvnp6vi9tr/3342271610200301357
/tmp/adamTestMvnp6vi9tr/3342271610200301357/unordered.adam
/tmp/adamTestMvnp6vi9tr/3342271610200301357/unordered.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/3342271610200301357/unordered.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/3342271610200301357/unordered.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/3342271610200301357/unordered.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/3342271610200301357/unordered.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/3342271610200301357/unordered.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/3342271610200301357/unordered.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/3342271610200301357/unordered.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/3342271610200301357/unordered.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/3342271610200301357/unordered.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/3342271610200301357/unordered.adam/_metadata
/tmp/adamTestMvnp6vi9tr/3342271610200301357/unordered.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/3342271610200301357/unordered.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/3342271610200301357/unordered.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite120647733813345752
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite6887769006514107346
/tmp/adamTestMvnp6vi9tr/TempSuite2103524908836257562.bed
/tmp/adamTestMvnp6vi9tr/TempSuite2103524908836257562.bed/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2103524908836257562.bed/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite2103524908836257562.bed/part-00000
/tmp/adamTestMvnp6vi9tr/TempSuite2103524908836257562.bed/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/ordered.sam317746526232282533.sam
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite5132378738904802427.interval_list
/tmp/adamTestMvnp6vi9tr/TempSuite1391052640954571849
/tmp/adamTestMvnp6vi9tr/TempSuite965324066733677382.adam
/tmp/adamTestMvnp6vi9tr/TempSuite965324066733677382.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite965324066733677382.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite965324066733677382.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite965324066733677382.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite965324066733677382.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite965324066733677382.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite965324066733677382.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite965324066733677382.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite965324066733677382.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite965324066733677382.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7291390669296341555.adam
/tmp/adamTestMvnp6vi9tr/TempSuite7291390669296341555.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7291390669296341555.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7291390669296341555.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/TempSuite7291390669296341555.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/TempSuite7291390669296341555.adam/.part-00000-fd16f854-9317-4751-940b-bc98d5f763dc-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7291390669296341555.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite7291390669296341555.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite7291390669296341555.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7291390669296341555.adam/part-00000-fd16f854-9317-4751-940b-bc98d5f763dc-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite7291390669296341555.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2247279484377061752
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite5248167732399948396
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4403551513010531828
/tmp/adamTestMvnp6vi9tr/TempSuite2632417817530378851.adam
/tmp/adamTestMvnp6vi9tr/TempSuite2632417817530378851.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite2632417817530378851.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2632417817530378851.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2632417817530378851.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/TempSuite2632417817530378851.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite2632417817530378851.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/TempSuite2632417817530378851.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite2632417817530378851.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2632417817530378851.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2632417817530378851.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite2632417817530378851.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite2632417817530378851.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2632417817530378851.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2632417817530378851.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/8392174081296149325
/tmp/adamTestMvnp6vi9tr/8392174081296149325/.out.bam_head.crc
/tmp/adamTestMvnp6vi9tr/8392174081296149325/.out.bam.crc
/tmp/adamTestMvnp6vi9tr/8392174081296149325/out.bam_tail
/tmp/adamTestMvnp6vi9tr/8392174081296149325/out.bam_tail/.part-r-00003.bam.crc
/tmp/adamTestMvnp6vi9tr/8392174081296149325/out.bam_tail/.part-r-00002.bam.crc
/tmp/adamTestMvnp6vi9tr/8392174081296149325/out.bam_tail/part-r-00002.bam
/tmp/adamTestMvnp6vi9tr/8392174081296149325/out.bam_tail/_SUCCESS
/tmp/adamTestMvnp6vi9tr/8392174081296149325/out.bam_tail/.part-r-00001.bam.crc
/tmp/adamTestMvnp6vi9tr/8392174081296149325/out.bam_tail/part-r-00003.bam
/tmp/adamTestMvnp6vi9tr/8392174081296149325/out.bam_tail/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/8392174081296149325/out.bam_tail/.part-r-00000.bam.crc
/tmp/adamTestMvnp6vi9tr/8392174081296149325/out.bam_tail/part-r-00000.bam
/tmp/adamTestMvnp6vi9tr/8392174081296149325/out.bam_tail/part-r-00001.bam
/tmp/adamTestMvnp6vi9tr/8392174081296149325/out.bam
/tmp/adamTestMvnp6vi9tr/8392174081296149325/out.bam_head
/tmp/adamTestMvnp6vi9tr/TempSuite7291390669296341555
/tmp/adamTestMvnp6vi9tr/TempSuite964928815485628827
/tmp/adamTestMvnp6vi9tr/TempSuite8159694920255750971.adam
/tmp/adamTestMvnp6vi9tr/TempSuite8159694920255750971.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8159694920255750971.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite8159694920255750971.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite8159694920255750971.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/TempSuite8159694920255750971.adam/part-00000-917f072d-b6af-4ff9-b2d8-d49c8a17eef6-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite8159694920255750971.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8159694920255750971.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8159694920255750971.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8159694920255750971.adam/_header
/tmp/adamTestMvnp6vi9tr/TempSuite8159694920255750971.adam/.part-00000-917f072d-b6af-4ff9-b2d8-d49c8a17eef6-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite8419565447566146858
/tmp/adamTestMvnp6vi9tr/TempSuite499993172396043171
/tmp/adamTestMvnp6vi9tr/TempSuite7829943330658965155.adam
/tmp/adamTestMvnp6vi9tr/TempSuite7829943330658965155.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite7829943330658965155.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7829943330658965155.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite7829943330658965155.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite7829943330658965155.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7829943330658965155.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7829943330658965155.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite7829943330658965155.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/TempSuite7829943330658965155.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite7829943330658965155.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7829943330658965155.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7829943330658965155.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7829943330658965155.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7829943330658965155.adam/_header
/tmp/adamTestMvnp6vi9tr/7176617606152132976
/tmp/adamTestMvnp6vi9tr/7176617606152132976/ordered.sam
/tmp/adamTestMvnp6vi9tr/7176617606152132976/.ordered.sam.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7255329154576435838.adam
/tmp/adamTestMvnp6vi9tr/TempSuite7255329154576435838.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7255329154576435838.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite7255329154576435838.adam/part-00000-7e447299-d1d3-4ef6-bdc0-9a9a8017eb36-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite7255329154576435838.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite7255329154576435838.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7255329154576435838.adam/.part-00000-7e447299-d1d3-4ef6-bdc0-9a9a8017eb36-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite145986948771187414
/tmp/adamTestMvnp6vi9tr/.FeatureDatasetFunctionsSuite262631830503872068.gff3.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3125362639147488652
/tmp/adamTestMvnp6vi9tr/TempSuite3649973868210952519
/tmp/adamTestMvnp6vi9tr/TempSuite7451188912477433569
/tmp/adamTestMvnp6vi9tr/.TempSuite1116486192798401344_1.fq.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3714502793801425713
/tmp/adamTestMvnp6vi9tr/TempSuite9122049473205354091
/tmp/adamTestMvnp6vi9tr/TempSuite3246373573169401436
/tmp/adamTestMvnp6vi9tr/TempSuite4236717558836970799.adam
/tmp/adamTestMvnp6vi9tr/TempSuite4236717558836970799.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4236717558836970799.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite4236717558836970799.adam/_partitionedByStartPos
/tmp/adamTestMvnp6vi9tr/TempSuite4236717558836970799.adam/referenceName=1
/tmp/adamTestMvnp6vi9tr/TempSuite4236717558836970799.adam/referenceName=1/positionBin=0
/tmp/adamTestMvnp6vi9tr/TempSuite4236717558836970799.adam/referenceName=1/positionBin=0/part-00000-5f5ea879-aa87-4ed6-a1fd-b7655a8aa0b4.c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite4236717558836970799.adam/referenceName=1/positionBin=0/.part-00000-5f5ea879-aa87-4ed6-a1fd-b7655a8aa0b4.c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4236717558836970799.adam/referenceName=1/positionBin=169
/tmp/adamTestMvnp6vi9tr/TempSuite4236717558836970799.adam/referenceName=1/positionBin=169/part-00001-5f5ea879-aa87-4ed6-a1fd-b7655a8aa0b4.c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite4236717558836970799.adam/referenceName=1/positionBin=169/.part-00001-5f5ea879-aa87-4ed6-a1fd-b7655a8aa0b4.c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4236717558836970799.adam/referenceName=1/positionBin=14
/tmp/adamTestMvnp6vi9tr/TempSuite4236717558836970799.adam/referenceName=1/positionBin=14/part-00000-5f5ea879-aa87-4ed6-a1fd-b7655a8aa0b4.c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite4236717558836970799.adam/referenceName=1/positionBin=14/.part-00000-5f5ea879-aa87-4ed6-a1fd-b7655a8aa0b4.c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4236717558836970799.adam/referenceName=1/positionBin=240
/tmp/adamTestMvnp6vi9tr/TempSuite4236717558836970799.adam/referenceName=1/positionBin=240/.part-00002-5f5ea879-aa87-4ed6-a1fd-b7655a8aa0b4.c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4236717558836970799.adam/referenceName=1/positionBin=240/part-00002-5f5ea879-aa87-4ed6-a1fd-b7655a8aa0b4.c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite4236717558836970799.adam/._partitionedByStartPos.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4236717558836970799.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite4236717558836970799.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/TempSuite4236717558836970799.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4236717558836970799.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/javaAC1631350532510565804
/tmp/adamTestMvnp6vi9tr/javaAC1631350532510565804/testRdd.read.adam
/tmp/adamTestMvnp6vi9tr/javaAC1631350532510565804/testRdd.read.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/javaAC1631350532510565804/testRdd.read.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/javaAC1631350532510565804/testRdd.read.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/javaAC1631350532510565804/testRdd.read.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/javaAC1631350532510565804/testRdd.read.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/javaAC1631350532510565804/testRdd.read.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/javaAC1631350532510565804/testRdd.read.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/javaAC1631350532510565804/testRdd.read.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/javaAC1631350532510565804/testRdd.read.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/javaAC1631350532510565804/testRdd.read.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/javaAC1631350532510565804/testRdd.read.adam/_metadata
/tmp/adamTestMvnp6vi9tr/javaAC1631350532510565804/testRdd.read.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/javaAC1631350532510565804/testRdd.read.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/javaAC1631350532510565804/testRdd.read.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2429035286481088298.bam
/tmp/adamTestMvnp6vi9tr/TempSuite1336533418708661635
/tmp/adamTestMvnp6vi9tr/TempSuite3575115252480006272
/tmp/adamTestMvnp6vi9tr/TempSuite4823663574499243272
/tmp/adamTestMvnp6vi9tr/938045196639548749
/tmp/adamTestMvnp6vi9tr/938045196639548749/.sorted.lex.vcf.crc
/tmp/adamTestMvnp6vi9tr/938045196639548749/sorted.lex.vcf
/tmp/adamTestMvnp6vi9tr/TempSuite3785532726340821469.adam
/tmp/adamTestMvnp6vi9tr/TempSuite3785532726340821469.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite3785532726340821469.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3785532726340821469.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3785532726340821469.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/TempSuite3785532726340821469.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite3785532726340821469.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/TempSuite3785532726340821469.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite3785532726340821469.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3785532726340821469.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3785532726340821469.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite3785532726340821469.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite3785532726340821469.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3785532726340821469.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3785532726340821469.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7443241432961848648
/tmp/adamTestMvnp6vi9tr/TempSuite125800706028740197.adam
/tmp/adamTestMvnp6vi9tr/TempSuite125800706028740197.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite125800706028740197.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite125800706028740197.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite125800706028740197.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/TempSuite125800706028740197.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite125800706028740197.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/TempSuite125800706028740197.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite125800706028740197.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite125800706028740197.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite125800706028740197.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite125800706028740197.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite125800706028740197.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite125800706028740197.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite125800706028740197.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite3975244108371464907.fasta
/tmp/adamTestMvnp6vi9tr/TempSuite6684078277618125291
/tmp/adamTestMvnp6vi9tr/TempSuite7830937694798992326.adam
/tmp/adamTestMvnp6vi9tr/TempSuite7830937694798992326.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite7830937694798992326.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7830937694798992326.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite7830937694798992326.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite7830937694798992326.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7830937694798992326.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7830937694798992326.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite7830937694798992326.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/TempSuite7830937694798992326.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite7830937694798992326.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7830937694798992326.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7830937694798992326.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7830937694798992326.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7830937694798992326.adam/_header
/tmp/adamTestMvnp6vi9tr/TempSuite8728170887331629968
/tmp/adamTestMvnp6vi9tr/TempSuite7931171947117909547.bed
/tmp/adamTestMvnp6vi9tr/TempSuite7931171947117909547.bed/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7931171947117909547.bed/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite7931171947117909547.bed/part-00000
/tmp/adamTestMvnp6vi9tr/TempSuite7931171947117909547.bed/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2493874423675201172
/tmp/adamTestMvnp6vi9tr/TempSuite9106590412879342439
/tmp/adamTestMvnp6vi9tr/TempSuite7931171947117909547
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite1869130559962266078.bed
/tmp/adamTestMvnp6vi9tr/bqsr1.sam8875658173739147274.sam
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4360941730855853754.gtf
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4360941730855853754.gtf/.part-00003.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4360941730855853754.gtf/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4360941730855853754.gtf/_SUCCESS
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4360941730855853754.gtf/part-00003
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4360941730855853754.gtf/part-00000
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4360941730855853754.gtf/part-00002
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4360941730855853754.gtf/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4360941730855853754.gtf/.part-00002.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4360941730855853754.gtf/part-00001
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4360941730855853754.gtf/.part-00001.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4960481782653828197
/tmp/adamTestMvnp6vi9tr/6557860442036084384
/tmp/adamTestMvnp6vi9tr/6557860442036084384/tag.sam
/tmp/adamTestMvnp6vi9tr/6557860442036084384/.tag.sam.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7798381931374707398
/tmp/adamTestMvnp6vi9tr/TempSuite3799525204925531049.bed
/tmp/adamTestMvnp6vi9tr/TempSuite3799525204925531049.bed/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3799525204925531049.bed/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite3799525204925531049.bed/part-00000
/tmp/adamTestMvnp6vi9tr/TempSuite3799525204925531049.bed/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite3872540899449370567
/tmp/adamTestMvnp6vi9tr/TempSuite7504248799200369398.sam
/tmp/adamTestMvnp6vi9tr/TempSuite7504248799200369398.sam/part-r-00000.sam
/tmp/adamTestMvnp6vi9tr/TempSuite7504248799200369398.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7504248799200369398.sam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite7504248799200369398.sam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3533148427427676645
/tmp/adamTestMvnp6vi9tr/TempSuite5353602775656277264.adam
/tmp/adamTestMvnp6vi9tr/TempSuite5353602775656277264.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5353602775656277264.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite5353602775656277264.adam/.part-00000-6c4cd194-d414-4afd-aff6-5a70022f4f81-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5353602775656277264.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite5353602775656277264.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/TempSuite5353602775656277264.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5353602775656277264.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5353602775656277264.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5353602775656277264.adam/part-00000-6c4cd194-d414-4afd-aff6-5a70022f4f81-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite5353602775656277264.adam/_header
/tmp/adamTestMvnp6vi9tr/TempSuite1875809907862982615
/tmp/adamTestMvnp6vi9tr/TempSuite7714531388682530342
/tmp/adamTestMvnp6vi9tr/TempSuite5634477717183221744.adam
/tmp/adamTestMvnp6vi9tr/TempSuite5634477717183221744.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite5634477717183221744.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5634477717183221744.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite5634477717183221744.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite5634477717183221744.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5634477717183221744.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5634477717183221744.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite5634477717183221744.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite5634477717183221744.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5634477717183221744.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3260824043670587775.adam
/tmp/adamTestMvnp6vi9tr/TempSuite3260824043670587775.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3260824043670587775.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite3260824043670587775.adam/_partitionedByStartPos
/tmp/adamTestMvnp6vi9tr/TempSuite3260824043670587775.adam/referenceName=1
/tmp/adamTestMvnp6vi9tr/TempSuite3260824043670587775.adam/referenceName=1/positionBin=0
/tmp/adamTestMvnp6vi9tr/TempSuite3260824043670587775.adam/referenceName=1/positionBin=0/.part-00000-bca49576-fe3d-44ca-9b98-587e758da36e.c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3260824043670587775.adam/referenceName=1/positionBin=0/part-00000-bca49576-fe3d-44ca-9b98-587e758da36e.c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite3260824043670587775.adam/referenceName=1/positionBin=169
/tmp/adamTestMvnp6vi9tr/TempSuite3260824043670587775.adam/referenceName=1/positionBin=169/part-00001-bca49576-fe3d-44ca-9b98-587e758da36e.c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite3260824043670587775.adam/referenceName=1/positionBin=169/.part-00001-bca49576-fe3d-44ca-9b98-587e758da36e.c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3260824043670587775.adam/referenceName=1/positionBin=14
/tmp/adamTestMvnp6vi9tr/TempSuite3260824043670587775.adam/referenceName=1/positionBin=14/.part-00000-bca49576-fe3d-44ca-9b98-587e758da36e.c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3260824043670587775.adam/referenceName=1/positionBin=14/part-00000-bca49576-fe3d-44ca-9b98-587e758da36e.c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite3260824043670587775.adam/referenceName=1/positionBin=240
/tmp/adamTestMvnp6vi9tr/TempSuite3260824043670587775.adam/referenceName=1/positionBin=240/.part-00002-bca49576-fe3d-44ca-9b98-587e758da36e.c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3260824043670587775.adam/referenceName=1/positionBin=240/part-00002-bca49576-fe3d-44ca-9b98-587e758da36e.c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite3260824043670587775.adam/._partitionedByStartPos.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3260824043670587775.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite3260824043670587775.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/TempSuite3260824043670587775.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3260824043670587775.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite3610758287635436818
/tmp/adamTestMvnp6vi9tr/TempSuite4494469313662355404
/tmp/adamTestMvnp6vi9tr/TempSuite3278169525508374241.adam
/tmp/adamTestMvnp6vi9tr/TempSuite3278169525508374241.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite3278169525508374241.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3278169525508374241.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite3278169525508374241.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite3278169525508374241.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3278169525508374241.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3278169525508374241.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite3278169525508374241.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/TempSuite3278169525508374241.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite3278169525508374241.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3278169525508374241.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3278169525508374241.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3278169525508374241.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3278169525508374241.adam/_header
/tmp/adamTestMvnp6vi9tr/TempSuite5743425212739346109reads12.sam_2
/tmp/adamTestMvnp6vi9tr/TempSuite2845016163270811608.fq
/tmp/adamTestMvnp6vi9tr/TempSuite2845016163270811608.fq/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2845016163270811608.fq/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite2845016163270811608.fq/part-00000
/tmp/adamTestMvnp6vi9tr/TempSuite2845016163270811608.fq/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2687473130682859579
/tmp/adamTestMvnp6vi9tr/TempSuite839449800060620000
/tmp/adamTestMvnp6vi9tr/TempSuite2893862485547131648
/tmp/adamTestMvnp6vi9tr/TempSuite294695866996960786.adam
/tmp/adamTestMvnp6vi9tr/TempSuite294695866996960786.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite294695866996960786.adam/.part-00000-0d66aeb9-cb7c-415b-897f-a6d19d33e13f-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite294695866996960786.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite294695866996960786.adam/part-00000-0d66aeb9-cb7c-415b-897f-a6d19d33e13f-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite294695866996960786.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite294695866996960786.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8569989031351970547.adam
/tmp/adamTestMvnp6vi9tr/TempSuite8569989031351970547.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite8569989031351970547.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8569989031351970547.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite8569989031351970547.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite8569989031351970547.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8569989031351970547.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8569989031351970547.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite8569989031351970547.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite8569989031351970547.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8569989031351970547.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8569989031351970547.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8569989031351970547.adam/_header
/tmp/adamTestMvnp6vi9tr/TempSuite6596388918737451225
/tmp/adamTestMvnp6vi9tr/TempSuite125800706028740197
/tmp/adamTestMvnp6vi9tr/TempSuite7906693463585665234
/tmp/adamTestMvnp6vi9tr/TempSuite3134589785413026943.adam
/tmp/adamTestMvnp6vi9tr/TempSuite3134589785413026943.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3134589785413026943.adam/.part-00000-87d9727f-b1c6-47b2-8955-f45732ee0b92-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3134589785413026943.adam/part-00000-87d9727f-b1c6-47b2-8955-f45732ee0b92-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite3134589785413026943.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite3134589785413026943.adam/part-00003-87d9727f-b1c6-47b2-8955-f45732ee0b92-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite3134589785413026943.adam/.part-00005-87d9727f-b1c6-47b2-8955-f45732ee0b92-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3134589785413026943.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite3134589785413026943.adam/.part-00003-87d9727f-b1c6-47b2-8955-f45732ee0b92-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3134589785413026943.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/TempSuite3134589785413026943.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3134589785413026943.adam/part-00005-87d9727f-b1c6-47b2-8955-f45732ee0b92-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite3134589785413026943.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3059780409199576522
/tmp/adamTestMvnp6vi9tr/7414591454161368800
/tmp/adamTestMvnp6vi9tr/7414591454161368800/sorted-variants.vcf
/tmp/adamTestMvnp6vi9tr/7414591454161368800/.sorted-variants.vcf.crc
/tmp/adamTestMvnp6vi9tr/TempSuite9055170288696486709
/tmp/adamTestMvnp6vi9tr/artificial.sam696880867840251724.sam
/tmp/adamTestMvnp6vi9tr/.FeatureDatasetFunctionsSuite4351925970568150392.gtf.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7758646406133109688.adam
/tmp/adamTestMvnp6vi9tr/TempSuite7758646406133109688.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite7758646406133109688.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite7758646406133109688.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7758646406133109688.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7758646406133109688.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite7758646406133109688.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite7758646406133109688.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7758646406133109688.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite7758646406133109688.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7758646406133109688.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite7758646406133109688.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7758646406133109688.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite7758646406133109688.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/TempSuite7758646406133109688.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7758646406133109688.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite7758646406133109688.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7758646406133109688.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7758646406133109688.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite6684173626085612350.narrowPeak
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite6684173626085612350.narrowPeak/.part-00003.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite6684173626085612350.narrowPeak/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite6684173626085612350.narrowPeak/_SUCCESS
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite6684173626085612350.narrowPeak/part-00003
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite6684173626085612350.narrowPeak/part-00000
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite6684173626085612350.narrowPeak/part-00002
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite6684173626085612350.narrowPeak/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite6684173626085612350.narrowPeak/.part-00002.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite6684173626085612350.narrowPeak/part-00001
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite6684173626085612350.narrowPeak/.part-00001.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6298822734399776632
/tmp/adamTestMvnp6vi9tr/TempSuite7519867829022627529.adam
/tmp/adamTestMvnp6vi9tr/TempSuite7519867829022627529.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite7519867829022627529.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7519867829022627529.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite7519867829022627529.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite7519867829022627529.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7519867829022627529.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7519867829022627529.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite7519867829022627529.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite7519867829022627529.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7519867829022627529.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7519867829022627529.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7519867829022627529.adam/_header
/tmp/adamTestMvnp6vi9tr/TempSuite3400613815574658640
/tmp/adamTestMvnp6vi9tr/TempSuite6383731502167839491.adam
/tmp/adamTestMvnp6vi9tr/TempSuite6383731502167839491.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite6383731502167839491.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6383731502167839491.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6383731502167839491.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/TempSuite6383731502167839491.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite6383731502167839491.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/TempSuite6383731502167839491.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite6383731502167839491.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6383731502167839491.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6383731502167839491.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite6383731502167839491.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite6383731502167839491.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6383731502167839491.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6383731502167839491.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8228194961437927344
/tmp/adamTestMvnp6vi9tr/TempSuite4949610666552160093
/tmp/adamTestMvnp6vi9tr/TempSuite893395122686612643.sam
/tmp/adamTestMvnp6vi9tr/TempSuite893395122686612643.sam/part-r-00000.sam
/tmp/adamTestMvnp6vi9tr/TempSuite893395122686612643.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnp6vi9tr/TempSuite893395122686612643.sam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite893395122686612643.sam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/4566969040219556676
/tmp/adamTestMvnp6vi9tr/4566969040219556676/sorted.vcf
/tmp/adamTestMvnp6vi9tr/4566969040219556676/.sorted.vcf.crc
/tmp/adamTestMvnp6vi9tr/sample1.queryname.sam2774267591745569065.queryname.sam
/tmp/adamTestMvnp6vi9tr/TempSuite2910710121447988690.adam
/tmp/adamTestMvnp6vi9tr/TempSuite2910710121447988690.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2910710121447988690.adam/.part-00001-7c5d5830-2281-4fb4-b38c-6728f4eb5456-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2910710121447988690.adam/.part-00000-7c5d5830-2281-4fb4-b38c-6728f4eb5456-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2910710121447988690.adam/part-00000-7c5d5830-2281-4fb4-b38c-6728f4eb5456-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite2910710121447988690.adam/.part-00002-7c5d5830-2281-4fb4-b38c-6728f4eb5456-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2910710121447988690.adam/part-00002-7c5d5830-2281-4fb4-b38c-6728f4eb5456-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite2910710121447988690.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite2910710121447988690.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite2910710121447988690.adam/part-00001-7c5d5830-2281-4fb4-b38c-6728f4eb5456-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite2910710121447988690.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2910710121447988690.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2910710121447988690.adam/_header
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite2848934898101757717.adam
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite2848934898101757717.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite2848934898101757717.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite2848934898101757717.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite2848934898101757717.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite2848934898101757717.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite2848934898101757717.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite2848934898101757717.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite2848934898101757717.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite2848934898101757717.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite2848934898101757717.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite2848934898101757717.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite2848934898101757717.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite2848934898101757717.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite2848934898101757717.adam/_metadata
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite2848934898101757717.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite2848934898101757717.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite5901687421381842107.interval_list
/tmp/adamTestMvnp6vi9tr/5501223266539669982
/tmp/adamTestMvnp6vi9tr/5501223266539669982/predicate.2.adam
/tmp/adamTestMvnp6vi9tr/5501223266539669982/predicate.2.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/5501223266539669982/predicate.2.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/5501223266539669982/predicate.2.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/5501223266539669982/predicate.2.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/5501223266539669982/predicate.2.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/5501223266539669982/predicate.2.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/5501223266539669982/predicate.2.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/5501223266539669982/predicate.2.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/5501223266539669982/predicate.2.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/5501223266539669982/predicate.2.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/5501223266539669982/predicate.2.adam/_metadata
/tmp/adamTestMvnp6vi9tr/5501223266539669982/predicate.2.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/5501223266539669982/predicate.2.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/5501223266539669982/predicate.2.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite8466067374448364541
/tmp/adamTestMvnp6vi9tr/6644758622641836698
/tmp/adamTestMvnp6vi9tr/6644758622641836698/bqsr1.vcf.bgz
/tmp/adamTestMvnp6vi9tr/6644758622641836698/bqsr1.vcf.bgz/part-r-00000.bgz
/tmp/adamTestMvnp6vi9tr/6644758622641836698/bqsr1.vcf.bgz/.part-r-00000.bgz.crc
/tmp/adamTestMvnp6vi9tr/6644758622641836698/bqsr1.vcf.bgz/_SUCCESS
/tmp/adamTestMvnp6vi9tr/6644758622641836698/bqsr1.vcf.bgz/.part-r-00003.bgz.crc
/tmp/adamTestMvnp6vi9tr/6644758622641836698/bqsr1.vcf.bgz/part-r-00001.bgz
/tmp/adamTestMvnp6vi9tr/6644758622641836698/bqsr1.vcf.bgz/part-r-00003.bgz
/tmp/adamTestMvnp6vi9tr/6644758622641836698/bqsr1.vcf.bgz/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/6644758622641836698/bqsr1.vcf.bgz/part-r-00002.bgz
/tmp/adamTestMvnp6vi9tr/6644758622641836698/bqsr1.vcf.bgz/.part-r-00002.bgz.crc
/tmp/adamTestMvnp6vi9tr/6644758622641836698/bqsr1.vcf.bgz/.part-r-00001.bgz.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8780507055453635715
/tmp/adamTestMvnp6vi9tr/TempSuite92893774413366418.adam
/tmp/adamTestMvnp6vi9tr/TempSuite92893774413366418.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite92893774413366418.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite92893774413366418.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite92893774413366418.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite92893774413366418.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite92893774413366418.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite92893774413366418.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite92893774413366418.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite92893774413366418.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite92893774413366418.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite92893774413366418.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite92893774413366418.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite92893774413366418.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite92893774413366418.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite92893774413366418.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite92893774413366418.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite92893774413366418.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite92893774413366418.adam/_header
/tmp/adamTestMvnp6vi9tr/TempSuite8126885162167894224
/tmp/adamTestMvnp6vi9tr/TempSuite500058174364352956
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite2192863457810638589
/tmp/adamTestMvnp6vi9tr/965711195308480212
/tmp/adamTestMvnp6vi9tr/965711195308480212/genotypes.nested-annotations.adam
/tmp/adamTestMvnp6vi9tr/965711195308480212/genotypes.nested-annotations.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/965711195308480212/genotypes.nested-annotations.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/965711195308480212/genotypes.nested-annotations.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/965711195308480212/genotypes.nested-annotations.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/965711195308480212/genotypes.nested-annotations.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/965711195308480212/genotypes.nested-annotations.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/965711195308480212/genotypes.nested-annotations.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/965711195308480212/genotypes.nested-annotations.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/965711195308480212/genotypes.nested-annotations.adam/_metadata
/tmp/adamTestMvnp6vi9tr/965711195308480212/genotypes.nested-annotations.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/965711195308480212/genotypes.nested-annotations.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/965711195308480212/genotypes.nested-annotations.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/965711195308480212/genotypes.nested-annotations.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/965711195308480212/genotypes.nested-annotations.adam/_header
/tmp/adamTestMvnp6vi9tr/TempSuite7186382322142781209.adam
/tmp/adamTestMvnp6vi9tr/TempSuite7186382322142781209.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite7186382322142781209.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7186382322142781209.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite7186382322142781209.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite7186382322142781209.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7186382322142781209.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7186382322142781209.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite7186382322142781209.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite7186382322142781209.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7186382322142781209.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5252928579244436893.adam
/tmp/adamTestMvnp6vi9tr/TempSuite5252928579244436893.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5252928579244436893.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite5252928579244436893.adam/.part-00000-b7e2805c-b171-448a-88ec-d144b3965622-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5252928579244436893.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite5252928579244436893.adam/part-00000-b7e2805c-b171-448a-88ec-d144b3965622-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite5252928579244436893.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/TempSuite5252928579244436893.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5252928579244436893.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5252928579244436893.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5252928579244436893.adam/_header
/tmp/adamTestMvnp6vi9tr/.TempSuite7851587388838864645.fq.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8011302102963368861.fa
/tmp/adamTestMvnp6vi9tr/TempSuite8011302102963368861.fa/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8011302102963368861.fa/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite8011302102963368861.fa/part-00000
/tmp/adamTestMvnp6vi9tr/TempSuite8011302102963368861.fa/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite161439522051811601.adam
/tmp/adamTestMvnp6vi9tr/TempSuite161439522051811601.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite161439522051811601.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite161439522051811601.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite161439522051811601.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite161439522051811601.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite161439522051811601.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite161439522051811601.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite161439522051811601.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite161439522051811601.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite161439522051811601.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite161439522051811601.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite161439522051811601.adam/_header
/tmp/adamTestMvnp6vi9tr/8865163268635942838
/tmp/adamTestMvnp6vi9tr/8865163268635942838/ordered.sam
/tmp/adamTestMvnp6vi9tr/8865163268635942838/.ordered.sam.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6684680180898399848.adam
/tmp/adamTestMvnp6vi9tr/TempSuite6684680180898399848.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite6684680180898399848.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6684680180898399848.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6684680180898399848.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/TempSuite6684680180898399848.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite6684680180898399848.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/TempSuite6684680180898399848.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite6684680180898399848.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6684680180898399848.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6684680180898399848.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite6684680180898399848.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite6684680180898399848.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6684680180898399848.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6684680180898399848.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4472624969604870379
/tmp/adamTestMvnp6vi9tr/TempSuite4075008614795996609
/tmp/adamTestMvnp6vi9tr/TempSuite394814934888691272.adam
/tmp/adamTestMvnp6vi9tr/TempSuite394814934888691272.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite394814934888691272.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite394814934888691272.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite394814934888691272.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/TempSuite394814934888691272.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite394814934888691272.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/TempSuite394814934888691272.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite394814934888691272.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite394814934888691272.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite394814934888691272.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite394814934888691272.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite394814934888691272.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite394814934888691272.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite394814934888691272.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/small.vcf3268382210016798184.vcf
/tmp/adamTestMvnp6vi9tr/TempSuite1473408429152128149
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite8683070675609003645
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4403551513010531828.gff3
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4403551513010531828.gff3/.part-00003.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4403551513010531828.gff3/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4403551513010531828.gff3/_SUCCESS
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4403551513010531828.gff3/part-00003
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4403551513010531828.gff3/part-00000
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4403551513010531828.gff3/part-00002
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4403551513010531828.gff3/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4403551513010531828.gff3/.part-00002.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4403551513010531828.gff3/part-00001
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4403551513010531828.gff3/.part-00001.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7082431892253080320
/tmp/adamTestMvnp6vi9tr/6209971082358667027
/tmp/adamTestMvnp6vi9tr/6209971082358667027/genotypes.adam
/tmp/adamTestMvnp6vi9tr/6209971082358667027/genotypes.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/6209971082358667027/genotypes.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/6209971082358667027/genotypes.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/6209971082358667027/genotypes.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/6209971082358667027/genotypes.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/6209971082358667027/genotypes.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/6209971082358667027/genotypes.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/6209971082358667027/genotypes.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/6209971082358667027/genotypes.adam/_metadata
/tmp/adamTestMvnp6vi9tr/6209971082358667027/genotypes.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/6209971082358667027/genotypes.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/6209971082358667027/genotypes.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/6209971082358667027/genotypes.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/6209971082358667027/genotypes.adam/_header
/tmp/adamTestMvnp6vi9tr/TempSuite4151310816179340561.adam
/tmp/adamTestMvnp6vi9tr/TempSuite4151310816179340561.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4151310816179340561.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4151310816179340561.adam/.part-00000-26b962aa-cd36-47d4-bf90-e14393b4e8a2-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4151310816179340561.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/TempSuite4151310816179340561.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/TempSuite4151310816179340561.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite4151310816179340561.adam/part-00000-26b962aa-cd36-47d4-bf90-e14393b4e8a2-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite4151310816179340561.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite4151310816179340561.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4151310816179340561.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2112061012120250873.adam
/tmp/adamTestMvnp6vi9tr/TempSuite2112061012120250873.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite2112061012120250873.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite2112061012120250873.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2112061012120250873.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2112061012120250873.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2112061012120250873.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/TempSuite2112061012120250873.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite2112061012120250873.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/TempSuite2112061012120250873.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite2112061012120250873.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2112061012120250873.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite2112061012120250873.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2112061012120250873.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite2112061012120250873.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2112061012120250873.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite2112061012120250873.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2112061012120250873.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite2112061012120250873.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2112061012120250873.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2112061012120250873.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/unordered.sam7131482765657937097.sam
/tmp/adamTestMvnp6vi9tr/TempSuite2687278615623947539
/tmp/adamTestMvnp6vi9tr/TempSuite7897745682924216286.sam
/tmp/adamTestMvnp6vi9tr/TempSuite7897745682924216286.sam/part-r-00000.sam
/tmp/adamTestMvnp6vi9tr/TempSuite7897745682924216286.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7897745682924216286.sam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite7897745682924216286.sam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1145456065865478403.adam
/tmp/adamTestMvnp6vi9tr/TempSuite1145456065865478403.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite1145456065865478403.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1145456065865478403.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite1145456065865478403.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite1145456065865478403.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1145456065865478403.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1145456065865478403.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite1145456065865478403.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite1145456065865478403.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1145456065865478403.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1145456065865478403.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1145456065865478403.adam/_header
/tmp/adamTestMvnp6vi9tr/TempSuite3047545956527246062
/tmp/adamTestMvnp6vi9tr/TempSuite2745085828070688279
/tmp/adamTestMvnp6vi9tr/TempSuite8126885162167894224.adam
/tmp/adamTestMvnp6vi9tr/TempSuite8126885162167894224.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite8126885162167894224.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8126885162167894224.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8126885162167894224.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/TempSuite8126885162167894224.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite8126885162167894224.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/TempSuite8126885162167894224.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite8126885162167894224.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8126885162167894224.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8126885162167894224.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite8126885162167894224.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite8126885162167894224.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8126885162167894224.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8126885162167894224.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/5658716698567009476
/tmp/adamTestMvnp6vi9tr/5658716698567009476/ordered.sam
/tmp/adamTestMvnp6vi9tr/5658716698567009476/.ordered.sam.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3106036682446944110
/tmp/adamTestMvnp6vi9tr/TempSuite415341459376480349.adam
/tmp/adamTestMvnp6vi9tr/TempSuite415341459376480349.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite415341459376480349.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite415341459376480349.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite415341459376480349.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite415341459376480349.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite415341459376480349.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite415341459376480349.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite415341459376480349.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/TempSuite415341459376480349.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite415341459376480349.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite415341459376480349.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite415341459376480349.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite415341459376480349.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite415341459376480349.adam/_header
/tmp/adamTestMvnp6vi9tr/bqsr16498121903985982620
/tmp/adamTestMvnp6vi9tr/bqsr16498121903985982620/.bqsr1.sam.crc
/tmp/adamTestMvnp6vi9tr/bqsr16498121903985982620/bqsr1.sam
/tmp/adamTestMvnp6vi9tr/TempSuite5909230937524980304
/tmp/adamTestMvnp6vi9tr/TempSuite7504248799200369398
/tmp/adamTestMvnp6vi9tr/TempSuite6665414693604320976.bed
/tmp/adamTestMvnp6vi9tr/TempSuite6665414693604320976.bed/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6665414693604320976.bed/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite6665414693604320976.bed/part-00000
/tmp/adamTestMvnp6vi9tr/TempSuite6665414693604320976.bed/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite1261753458744471700
/tmp/adamTestMvnp6vi9tr/.FeatureDatasetFunctionsSuite4851424977032712138.bed.crc
/tmp/adamTestMvnp6vi9tr/.TempSuite7043533191489276538.sam.crc
/tmp/adamTestMvnp6vi9tr/5818333904797957979
/tmp/adamTestMvnp6vi9tr/5818333904797957979/.sorted.lex.vcf.crc
/tmp/adamTestMvnp6vi9tr/5818333904797957979/sorted.lex.vcf
/tmp/adamTestMvnp6vi9tr/TempSuite500058174364352956.adam
/tmp/adamTestMvnp6vi9tr/TempSuite500058174364352956.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite500058174364352956.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite500058174364352956.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite500058174364352956.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite500058174364352956.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite500058174364352956.adam/._partitionMap.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite500058174364352956.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/TempSuite500058174364352956.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite500058174364352956.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/TempSuite500058174364352956.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite500058174364352956.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite500058174364352956.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite500058174364352956.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite500058174364352956.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite500058174364352956.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite500058174364352956.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite500058174364352956.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite500058174364352956.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite500058174364352956.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite500058174364352956.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite500058174364352956.adam/_partitionMap.avro
/tmp/adamTestMvnp6vi9tr/TempSuite500058174364352956.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite9034094110595890389
/tmp/adamTestMvnp6vi9tr/TempSuite4063368894917503283
/tmp/adamTestMvnp6vi9tr/TempSuite7769852889788736386.adam
/tmp/adamTestMvnp6vi9tr/TempSuite7769852889788736386.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite7769852889788736386.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7769852889788736386.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7769852889788736386.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/TempSuite7769852889788736386.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite7769852889788736386.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/TempSuite7769852889788736386.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite7769852889788736386.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7769852889788736386.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7769852889788736386.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite7769852889788736386.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite7769852889788736386.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7769852889788736386.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7769852889788736386.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8780507055453635715.adam
/tmp/adamTestMvnp6vi9tr/TempSuite8780507055453635715.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite8780507055453635715.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8780507055453635715.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8780507055453635715.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/TempSuite8780507055453635715.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite8780507055453635715.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/TempSuite8780507055453635715.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite8780507055453635715.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8780507055453635715.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8780507055453635715.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite8780507055453635715.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite8780507055453635715.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8780507055453635715.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8780507055453635715.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2050232594483918635_1.fq
/tmp/adamTestMvnp6vi9tr/TempSuite2050232594483918635_1.fq/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2050232594483918635_1.fq/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite2050232594483918635_1.fq/part-00000
/tmp/adamTestMvnp6vi9tr/TempSuite2050232594483918635_1.fq/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/random.vcf2974357978626801420.vcf
/tmp/adamTestMvnp6vi9tr/4253670426933663579
/tmp/adamTestMvnp6vi9tr/4253670426933663579/coverage.adam
/tmp/adamTestMvnp6vi9tr/4253670426933663579/coverage.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/4253670426933663579/coverage.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/4253670426933663579/coverage.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/4253670426933663579/coverage.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/4253670426933663579/coverage.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/4253670426933663579/coverage.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/4253670426933663579/coverage.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/4253670426933663579/coverage.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/4253670426933663579/coverage.adam/_metadata
/tmp/adamTestMvnp6vi9tr/4253670426933663579/coverage.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/4253670426933663579/coverage.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/4253670426933663579/coverage.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1494242986863000758
/tmp/adamTestMvnp6vi9tr/1603159707487-0
/tmp/adamTestMvnp6vi9tr/1603159707487-0/bamReads.adam
/tmp/adamTestMvnp6vi9tr/1603159707487-0/bamReads.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/1603159707487-0/bamReads.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/1603159707487-0/bamReads.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/1603159707487-0/bamReads.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/1603159707487-0/bamReads.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/1603159707487-0/bamReads.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/1603159707487-0/bamReads.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/1603159707487-0/bamReads.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/1603159707487-0/bamReads.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/1603159707487-0/bamReads.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/1603159707487-0/bamReads.adam/_metadata
/tmp/adamTestMvnp6vi9tr/1603159707487-0/bamReads.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/1603159707487-0/bamReads.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/1603159707487-0/bamReads.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/ordered.sam7745945301702896934.sam
/tmp/adamTestMvnp6vi9tr/TempSuite7897745682924216286
/tmp/adamTestMvnp6vi9tr/TempSuite7493678478064371392
/tmp/adamTestMvnp6vi9tr/TempSuite8017599735452579562
/tmp/adamTestMvnp6vi9tr/5190962453576493193
/tmp/adamTestMvnp6vi9tr/5190962453576493193/unordered.sam
/tmp/adamTestMvnp6vi9tr/5190962453576493193/.unordered.sam.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7970852887489104908.bed
/tmp/adamTestMvnp6vi9tr/TempSuite7970852887489104908.bed/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7970852887489104908.bed/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite7970852887489104908.bed/part-00000
/tmp/adamTestMvnp6vi9tr/TempSuite7970852887489104908.bed/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/7278414068816406037
/tmp/adamTestMvnp6vi9tr/7278414068816406037/sorted.sam
/tmp/adamTestMvnp6vi9tr/7278414068816406037/.sorted.sam.crc
/tmp/adamTestMvnp6vi9tr/6755564192796202123
/tmp/adamTestMvnp6vi9tr/6755564192796202123/.out.bam_head.crc
/tmp/adamTestMvnp6vi9tr/6755564192796202123/.out.bam.crc
/tmp/adamTestMvnp6vi9tr/6755564192796202123/out.bam_tail
/tmp/adamTestMvnp6vi9tr/6755564192796202123/out.bam_tail/.part-r-00003.bam.crc
/tmp/adamTestMvnp6vi9tr/6755564192796202123/out.bam_tail/.part-r-00002.bam.crc
/tmp/adamTestMvnp6vi9tr/6755564192796202123/out.bam_tail/part-r-00002.bam
/tmp/adamTestMvnp6vi9tr/6755564192796202123/out.bam_tail/_SUCCESS
/tmp/adamTestMvnp6vi9tr/6755564192796202123/out.bam_tail/.part-r-00001.bam.crc
/tmp/adamTestMvnp6vi9tr/6755564192796202123/out.bam_tail/part-r-00003.bam
/tmp/adamTestMvnp6vi9tr/6755564192796202123/out.bam_tail/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/6755564192796202123/out.bam_tail/.part-r-00000.bam.crc
/tmp/adamTestMvnp6vi9tr/6755564192796202123/out.bam_tail/part-r-00000.bam
/tmp/adamTestMvnp6vi9tr/6755564192796202123/out.bam_tail/part-r-00001.bam
/tmp/adamTestMvnp6vi9tr/6755564192796202123/out.bam
/tmp/adamTestMvnp6vi9tr/6755564192796202123/out.bam_head
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7144242677573734242.interval_list
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7144242677573734242.interval_list/.part-00003.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7144242677573734242.interval_list/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7144242677573734242.interval_list/_SUCCESS
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7144242677573734242.interval_list/part-00003
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7144242677573734242.interval_list/part-00000
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7144242677573734242.interval_list/part-00002
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7144242677573734242.interval_list/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7144242677573734242.interval_list/.part-00002.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7144242677573734242.interval_list/part-00001
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7144242677573734242.interval_list/.part-00001.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4093371270474370892
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite7384637894457676399
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7041330577014764758
/tmp/adamTestMvnp6vi9tr/TempSuite8325873512100056445
/tmp/adamTestMvnp6vi9tr/TempSuite8228194961437927344_2.fq
/tmp/adamTestMvnp6vi9tr/TempSuite8228194961437927344_2.fq/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8228194961437927344_2.fq/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite8228194961437927344_2.fq/part-00000
/tmp/adamTestMvnp6vi9tr/TempSuite8228194961437927344_2.fq/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/.FeatureDatasetFunctionsSuite5473229968341215281.bed.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5686264315205883881
/tmp/adamTestMvnp6vi9tr/TempSuite4100747980520390361.adam
/tmp/adamTestMvnp6vi9tr/TempSuite4100747980520390361.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite4100747980520390361.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite4100747980520390361.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4100747980520390361.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4100747980520390361.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite4100747980520390361.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite4100747980520390361.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4100747980520390361.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite4100747980520390361.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4100747980520390361.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite4100747980520390361.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4100747980520390361.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite4100747980520390361.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4100747980520390361.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite4100747980520390361.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4100747980520390361.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/noqual3281669631923049110
/tmp/adamTestMvnp6vi9tr/noqual3281669631923049110/noqualB.fastq
/tmp/adamTestMvnp6vi9tr/noqual3281669631923049110/noqualB.fastq/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/noqual3281669631923049110/noqualB.fastq/_SUCCESS
/tmp/adamTestMvnp6vi9tr/noqual3281669631923049110/noqualB.fastq/part-00000
/tmp/adamTestMvnp6vi9tr/noqual3281669631923049110/noqualB.fastq/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/noqual3281669631923049110/noqualA.sam
/tmp/adamTestMvnp6vi9tr/noqual3281669631923049110/noqualA.sam/part-r-00000.sam
/tmp/adamTestMvnp6vi9tr/noqual3281669631923049110/noqualA.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnp6vi9tr/noqual3281669631923049110/noqualA.sam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/noqual3281669631923049110/noqualA.sam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5554454455292328117
/tmp/adamTestMvnp6vi9tr/TempSuite6533199953547546264
/tmp/adamTestMvnp6vi9tr/TempSuite4974202934566526800
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite262631830503872068
/tmp/adamTestMvnp6vi9tr/bqsr1631534133415402620
/tmp/adamTestMvnp6vi9tr/bqsr1631534133415402620/.bqsr1.sam.crc
/tmp/adamTestMvnp6vi9tr/bqsr1631534133415402620/bqsr1.sam
/tmp/adamTestMvnp6vi9tr/TempSuite1186212526344639482
/tmp/adamTestMvnp6vi9tr/TempSuite2811945349886170651.bed
/tmp/adamTestMvnp6vi9tr/TempSuite2811945349886170651.bed/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2811945349886170651.bed/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite2811945349886170651.bed/part-00000
/tmp/adamTestMvnp6vi9tr/TempSuite2811945349886170651.bed/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5526804026136792703
/tmp/adamTestMvnp6vi9tr/TempSuite4587493772953416627
/tmp/adamTestMvnp6vi9tr/241577127836314478
/tmp/adamTestMvnp6vi9tr/241577127836314478/sorted.vcf
/tmp/adamTestMvnp6vi9tr/241577127836314478/.sorted.vcf.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite5396957064731648332
/tmp/adamTestMvnp6vi9tr/TempSuite4316748237787134600.bed
/tmp/adamTestMvnp6vi9tr/TempSuite4316748237787134600.bed/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4316748237787134600.bed/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite4316748237787134600.bed/part-00000
/tmp/adamTestMvnp6vi9tr/TempSuite4316748237787134600.bed/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5088931115380425545
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite3176066554659541061
/tmp/adamTestMvnp6vi9tr/.FeatureDatasetFunctionsSuite1869130559962266078.bed.crc
/tmp/adamTestMvnp6vi9tr/8449104136803586643
/tmp/adamTestMvnp6vi9tr/8449104136803586643/variants.lex.adam
/tmp/adamTestMvnp6vi9tr/8449104136803586643/variants.lex.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/8449104136803586643/variants.lex.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/8449104136803586643/variants.lex.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/8449104136803586643/variants.lex.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/8449104136803586643/variants.lex.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/8449104136803586643/variants.lex.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/8449104136803586643/variants.lex.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/8449104136803586643/variants.lex.adam/_metadata
/tmp/adamTestMvnp6vi9tr/8449104136803586643/variants.lex.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/8449104136803586643/variants.lex.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/8449104136803586643/variants.lex.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/8449104136803586643/variants.lex.adam/_header
/tmp/adamTestMvnp6vi9tr/TempSuite8378096660118275651
/tmp/adamTestMvnp6vi9tr/TempSuite6231704382382810225
/tmp/adamTestMvnp6vi9tr/TempSuite5186442357439914579
/tmp/adamTestMvnp6vi9tr/TempSuite2134445173955125083
/tmp/adamTestMvnp6vi9tr/TempSuite298003135151145281
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite5248167732399948396.interval_list
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite5248167732399948396.interval_list/.part-00003.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite5248167732399948396.interval_list/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite5248167732399948396.interval_list/_SUCCESS
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite5248167732399948396.interval_list/part-00003
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite5248167732399948396.interval_list/part-00000
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite5248167732399948396.interval_list/part-00002
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite5248167732399948396.interval_list/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite5248167732399948396.interval_list/.part-00002.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite5248167732399948396.interval_list/part-00001
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite5248167732399948396.interval_list/.part-00001.crc
/tmp/adamTestMvnp6vi9tr/2349907343803335359
/tmp/adamTestMvnp6vi9tr/2349907343803335359/.artificial.cram.crc
/tmp/adamTestMvnp6vi9tr/2349907343803335359/artificial.cram
/tmp/adamTestMvnp6vi9tr/small.sam1726426385243848939.sam
/tmp/adamTestMvnp6vi9tr/993728849893079880
/tmp/adamTestMvnp6vi9tr/993728849893079880/artificial.cram
/tmp/adamTestMvnp6vi9tr/993728849893079880/artificial.cram/_SUCCESS
/tmp/adamTestMvnp6vi9tr/993728849893079880/artificial.cram/.part-r-00000.cram.crc
/tmp/adamTestMvnp6vi9tr/993728849893079880/artificial.cram/part-r-00000.cram
/tmp/adamTestMvnp6vi9tr/993728849893079880/artificial.cram/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6298822734399776632.bed
/tmp/adamTestMvnp6vi9tr/TempSuite6298822734399776632.bed/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6298822734399776632.bed/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite6298822734399776632.bed/part-00000
/tmp/adamTestMvnp6vi9tr/TempSuite6298822734399776632.bed/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5923961432884763768
/tmp/adamTestMvnp6vi9tr/TempSuite4849196910227591811
/tmp/adamTestMvnp6vi9tr/reads12164138037131075320
/tmp/adamTestMvnp6vi9tr/reads12164138037131075320/reads12.fq
/tmp/adamTestMvnp6vi9tr/reads12164138037131075320/reads12.fq/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/reads12164138037131075320/reads12.fq/_SUCCESS
/tmp/adamTestMvnp6vi9tr/reads12164138037131075320/reads12.fq/part-00000
/tmp/adamTestMvnp6vi9tr/reads12164138037131075320/reads12.fq/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3798664580126944008.adam
/tmp/adamTestMvnp6vi9tr/TempSuite3798664580126944008.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite3798664580126944008.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3798664580126944008.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3798664580126944008.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/TempSuite3798664580126944008.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite3798664580126944008.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/TempSuite3798664580126944008.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite3798664580126944008.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3798664580126944008.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3798664580126944008.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite3798664580126944008.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite3798664580126944008.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3798664580126944008.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3798664580126944008.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7155354552417680737.adam
/tmp/adamTestMvnp6vi9tr/TempSuite7155354552417680737.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite7155354552417680737.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7155354552417680737.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite7155354552417680737.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite7155354552417680737.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7155354552417680737.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7155354552417680737.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite7155354552417680737.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/TempSuite7155354552417680737.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite7155354552417680737.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7155354552417680737.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7155354552417680737.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7155354552417680737.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7155354552417680737.adam/_header
/tmp/adamTestMvnp6vi9tr/TempSuite1034040460008801239
/tmp/adamTestMvnp6vi9tr/TempSuite144276835327553196.vcf
/tmp/adamTestMvnp6vi9tr/TempSuite144276835327553196.vcf/.part-r-00000.crc
/tmp/adamTestMvnp6vi9tr/TempSuite144276835327553196.vcf/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite144276835327553196.vcf/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite144276835327553196.vcf/part-r-00000
/tmp/adamTestMvnp6vi9tr/TempSuite2502912643671208316
/tmp/adamTestMvnp6vi9tr/TempSuite8272303995182771648.adam
/tmp/adamTestMvnp6vi9tr/TempSuite8272303995182771648.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite8272303995182771648.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8272303995182771648.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8272303995182771648.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/TempSuite8272303995182771648.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite8272303995182771648.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/TempSuite8272303995182771648.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite8272303995182771648.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8272303995182771648.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8272303995182771648.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite8272303995182771648.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite8272303995182771648.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8272303995182771648.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8272303995182771648.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4615381507560257674.adam
/tmp/adamTestMvnp6vi9tr/TempSuite4615381507560257674.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4615381507560257674.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite4615381507560257674.adam/_partitionedByStartPos
/tmp/adamTestMvnp6vi9tr/TempSuite4615381507560257674.adam/referenceName=13
/tmp/adamTestMvnp6vi9tr/TempSuite4615381507560257674.adam/referenceName=13/positionBin=0
/tmp/adamTestMvnp6vi9tr/TempSuite4615381507560257674.adam/referenceName=13/positionBin=0/.part-00000-f866582b-fb81-42e6-8ca7-b706c049b5ac.c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4615381507560257674.adam/referenceName=13/positionBin=0/part-00000-f866582b-fb81-42e6-8ca7-b706c049b5ac.c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite4615381507560257674.adam/referenceName=1
/tmp/adamTestMvnp6vi9tr/TempSuite4615381507560257674.adam/referenceName=1/positionBin=0
/tmp/adamTestMvnp6vi9tr/TempSuite4615381507560257674.adam/referenceName=1/positionBin=0/.part-00000-f866582b-fb81-42e6-8ca7-b706c049b5ac.c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4615381507560257674.adam/referenceName=1/positionBin=0/part-00000-f866582b-fb81-42e6-8ca7-b706c049b5ac.c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite4615381507560257674.adam/._partitionedByStartPos.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4615381507560257674.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite4615381507560257674.adam/referenceName=2
/tmp/adamTestMvnp6vi9tr/TempSuite4615381507560257674.adam/referenceName=2/positionBin=0
/tmp/adamTestMvnp6vi9tr/TempSuite4615381507560257674.adam/referenceName=2/positionBin=0/.part-00000-f866582b-fb81-42e6-8ca7-b706c049b5ac.c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4615381507560257674.adam/referenceName=2/positionBin=0/part-00000-f866582b-fb81-42e6-8ca7-b706c049b5ac.c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite4615381507560257674.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4615381507560257674.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4615381507560257674.adam/_header
/tmp/adamTestMvnp6vi9tr/TempSuite3123532763834492030
/tmp/adamTestMvnp6vi9tr/TempSuite5909230937524980304.adam
/tmp/adamTestMvnp6vi9tr/TempSuite5909230937524980304.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite5909230937524980304.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite5909230937524980304.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5909230937524980304.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5909230937524980304.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite5909230937524980304.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite5909230937524980304.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5909230937524980304.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite5909230937524980304.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5909230937524980304.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite5909230937524980304.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5909230937524980304.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite5909230937524980304.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/TempSuite5909230937524980304.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5909230937524980304.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite5909230937524980304.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5909230937524980304.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5909230937524980304.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite992962583949262984.adam
/tmp/adamTestMvnp6vi9tr/TempSuite992962583949262984.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite992962583949262984.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite992962583949262984.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite992962583949262984.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/TempSuite992962583949262984.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite992962583949262984.adam/.part-00000-fb912433-82a9-4a92-b5db-f36b64472a06-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite992962583949262984.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite992962583949262984.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite992962583949262984.adam/_header
/tmp/adamTestMvnp6vi9tr/TempSuite992962583949262984.adam/part-00000-fb912433-82a9-4a92-b5db-f36b64472a06-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite90345737410421279.narrowPeak
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite90345737410421279.narrowPeak/.part-00003.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite90345737410421279.narrowPeak/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite90345737410421279.narrowPeak/_SUCCESS
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite90345737410421279.narrowPeak/part-00003
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite90345737410421279.narrowPeak/part-00000
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite90345737410421279.narrowPeak/part-00002
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite90345737410421279.narrowPeak/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite90345737410421279.narrowPeak/.part-00002.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite90345737410421279.narrowPeak/part-00001
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite90345737410421279.narrowPeak/.part-00001.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4949610666552160093.adam
/tmp/adamTestMvnp6vi9tr/TempSuite4949610666552160093.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4949610666552160093.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite4949610666552160093.adam/_partitionedByStartPos
/tmp/adamTestMvnp6vi9tr/TempSuite4949610666552160093.adam/referenceName=1
/tmp/adamTestMvnp6vi9tr/TempSuite4949610666552160093.adam/referenceName=1/positionBin=0
/tmp/adamTestMvnp6vi9tr/TempSuite4949610666552160093.adam/referenceName=1/positionBin=0/.part-00000-75d98d2f-85ee-40fe-bdd2-331521207ece.c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4949610666552160093.adam/referenceName=1/positionBin=0/part-00000-75d98d2f-85ee-40fe-bdd2-331521207ece.c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite4949610666552160093.adam/._partitionedByStartPos.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4949610666552160093.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite4949610666552160093.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/TempSuite4949610666552160093.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4949610666552160093.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4949610666552160093.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4949610666552160093.adam/_header
/tmp/adamTestMvnp6vi9tr/1603159104916-0
/tmp/adamTestMvnp6vi9tr/1603159104916-0/.test.gvcf.vcf.crc
/tmp/adamTestMvnp6vi9tr/1603159104916-0/test.gvcf.vcf
/tmp/adamTestMvnp6vi9tr/TempSuite3671819409314828768
/tmp/adamTestMvnp6vi9tr/TempSuite6383731502167839491
/tmp/adamTestMvnp6vi9tr/TempSuite1251811825453236910.adam
/tmp/adamTestMvnp6vi9tr/TempSuite1251811825453236910.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite1251811825453236910.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite1251811825453236910.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1251811825453236910.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1251811825453236910.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1251811825453236910.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/TempSuite1251811825453236910.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite1251811825453236910.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/TempSuite1251811825453236910.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite1251811825453236910.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1251811825453236910.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite1251811825453236910.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1251811825453236910.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite1251811825453236910.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1251811825453236910.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite1251811825453236910.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1251811825453236910.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite1251811825453236910.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1251811825453236910.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1251811825453236910.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8011302102963368861
/tmp/adamTestMvnp6vi9tr/6843170528621362004
/tmp/adamTestMvnp6vi9tr/6843170528621362004/.sorted.lex.vcf.crc
/tmp/adamTestMvnp6vi9tr/6843170528621362004/sorted.lex.vcf
/tmp/adamTestMvnp6vi9tr/6222883307949909450
/tmp/adamTestMvnp6vi9tr/6222883307949909450/genotypes.nested-annotations.adam
/tmp/adamTestMvnp6vi9tr/6222883307949909450/genotypes.nested-annotations.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/6222883307949909450/genotypes.nested-annotations.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/6222883307949909450/genotypes.nested-annotations.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/6222883307949909450/genotypes.nested-annotations.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/6222883307949909450/genotypes.nested-annotations.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/6222883307949909450/genotypes.nested-annotations.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/6222883307949909450/genotypes.nested-annotations.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/6222883307949909450/genotypes.nested-annotations.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/6222883307949909450/genotypes.nested-annotations.adam/_metadata
/tmp/adamTestMvnp6vi9tr/6222883307949909450/genotypes.nested-annotations.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/6222883307949909450/genotypes.nested-annotations.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/6222883307949909450/genotypes.nested-annotations.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/6222883307949909450/genotypes.nested-annotations.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/6222883307949909450/genotypes.nested-annotations.adam/_header
/tmp/adamTestMvnp6vi9tr/TempSuite4753430408079207851.adam
/tmp/adamTestMvnp6vi9tr/TempSuite4753430408079207851.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite4753430408079207851.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4753430408079207851.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4753430408079207851.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/TempSuite4753430408079207851.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite4753430408079207851.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/TempSuite4753430408079207851.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite4753430408079207851.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4753430408079207851.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4753430408079207851.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite4753430408079207851.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite4753430408079207851.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4753430408079207851.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4753430408079207851.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3578279995584905942.adam
/tmp/adamTestMvnp6vi9tr/TempSuite3578279995584905942.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite3578279995584905942.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3578279995584905942.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3578279995584905942.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/TempSuite3578279995584905942.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite3578279995584905942.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/TempSuite3578279995584905942.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite3578279995584905942.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3578279995584905942.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3578279995584905942.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite3578279995584905942.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite3578279995584905942.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3578279995584905942.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3578279995584905942.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7082431892253080320.bed
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7082431892253080320.bed/.part-00003.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7082431892253080320.bed/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7082431892253080320.bed/_SUCCESS
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7082431892253080320.bed/part-00003
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7082431892253080320.bed/part-00000
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7082431892253080320.bed/part-00002
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7082431892253080320.bed/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7082431892253080320.bed/.part-00002.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7082431892253080320.bed/part-00001
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7082431892253080320.bed/.part-00001.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4202529074963025580.adam
/tmp/adamTestMvnp6vi9tr/TempSuite4202529074963025580.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4202529074963025580.adam/part-00000-0d78f5bb-a8bb-4704-9fcc-32284c007b08-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite4202529074963025580.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite4202529074963025580.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite4202529074963025580.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4202529074963025580.adam/.part-00000-0d78f5bb-a8bb-4704-9fcc-32284c007b08-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4202529074963025580.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4202529074963025580.adam/_header
/tmp/adamTestMvnp6vi9tr/TempSuite5967099349127023303.bam
/tmp/adamTestMvnp6vi9tr/TempSuite5967099349127023303.bam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite5967099349127023303.bam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5967099349127023303.bam/.part-r-00000.bam.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5967099349127023303.bam/part-r-00000.bam
/tmp/adamTestMvnp6vi9tr/TempSuite2681846289982821369.bam
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite8683070675609003645.gtf
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite8683070675609003645.gtf/.part-00003.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite8683070675609003645.gtf/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite8683070675609003645.gtf/_SUCCESS
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite8683070675609003645.gtf/part-00003
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite8683070675609003645.gtf/part-00000
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite8683070675609003645.gtf/part-00002
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite8683070675609003645.gtf/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite8683070675609003645.gtf/.part-00002.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite8683070675609003645.gtf/part-00001
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite8683070675609003645.gtf/.part-00001.crc
/tmp/adamTestMvnp6vi9tr/TempSuite937764380217103434
/tmp/adamTestMvnp6vi9tr/TempSuite665521418124479663.adam
/tmp/adamTestMvnp6vi9tr/TempSuite665521418124479663.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite665521418124479663.adam/part-00000-725beb64-6eaf-4bb1-b94f-1b1efb9d3ae6-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite665521418124479663.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite665521418124479663.adam/.part-00000-725beb64-6eaf-4bb1-b94f-1b1efb9d3ae6-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite665521418124479663.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite665521418124479663.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/TempSuite665521418124479663.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite665521418124479663.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite665521418124479663.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite665521418124479663.adam/_header
/tmp/adamTestMvnp6vi9tr/trinity.fa5587872372121095920.fa
/tmp/adamTestMvnp6vi9tr/TempSuite511014505389250816
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4342089076155994124.interval_list
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4342089076155994124.interval_list/.part-00003.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4342089076155994124.interval_list/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4342089076155994124.interval_list/_SUCCESS
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4342089076155994124.interval_list/part-00003
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4342089076155994124.interval_list/part-00000
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4342089076155994124.interval_list/part-00002
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4342089076155994124.interval_list/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4342089076155994124.interval_list/.part-00002.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4342089076155994124.interval_list/part-00001
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4342089076155994124.interval_list/.part-00001.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8879932439749227268.adam
/tmp/adamTestMvnp6vi9tr/TempSuite8879932439749227268.adam/.part-00002-6511ce9d-0983-4e4a-bca5-d5f73479c0b2-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8879932439749227268.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8879932439749227268.adam/.part-00000-6511ce9d-0983-4e4a-bca5-d5f73479c0b2-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8879932439749227268.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite8879932439749227268.adam/part-00002-6511ce9d-0983-4e4a-bca5-d5f73479c0b2-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite8879932439749227268.adam/.part-00001-6511ce9d-0983-4e4a-bca5-d5f73479c0b2-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8879932439749227268.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite8879932439749227268.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/TempSuite8879932439749227268.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8879932439749227268.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8879932439749227268.adam/part-00000-6511ce9d-0983-4e4a-bca5-d5f73479c0b2-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite8879932439749227268.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8879932439749227268.adam/_header
/tmp/adamTestMvnp6vi9tr/TempSuite8879932439749227268.adam/part-00001-6511ce9d-0983-4e4a-bca5-d5f73479c0b2-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/8068468987363138520
/tmp/adamTestMvnp6vi9tr/8068468987363138520/out.cram_tail
/tmp/adamTestMvnp6vi9tr/8068468987363138520/out.cram_tail/.part-r-00003.cram.crc
/tmp/adamTestMvnp6vi9tr/8068468987363138520/out.cram_tail/.part-r-00001.cram.crc
/tmp/adamTestMvnp6vi9tr/8068468987363138520/out.cram_tail/_SUCCESS
/tmp/adamTestMvnp6vi9tr/8068468987363138520/out.cram_tail/.part-r-00000.cram.crc
/tmp/adamTestMvnp6vi9tr/8068468987363138520/out.cram_tail/part-r-00003.cram
/tmp/adamTestMvnp6vi9tr/8068468987363138520/out.cram_tail/part-r-00000.cram
/tmp/adamTestMvnp6vi9tr/8068468987363138520/out.cram_tail/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/8068468987363138520/out.cram_tail/part-r-00002.cram
/tmp/adamTestMvnp6vi9tr/8068468987363138520/out.cram_tail/part-r-00001.cram
/tmp/adamTestMvnp6vi9tr/8068468987363138520/out.cram_tail/.part-r-00002.cram.crc
/tmp/adamTestMvnp6vi9tr/8068468987363138520/.out.cram.crc
/tmp/adamTestMvnp6vi9tr/8068468987363138520/out.cram_head
/tmp/adamTestMvnp6vi9tr/8068468987363138520/.out.cram_head.crc
/tmp/adamTestMvnp6vi9tr/8068468987363138520/out.cram
/tmp/adamTestMvnp6vi9tr/TempSuite4015611359367922435
/tmp/adamTestMvnp6vi9tr/TempSuite9051769536400586133.sam
/tmp/adamTestMvnp6vi9tr/TempSuite9154521785634134918
/tmp/adamTestMvnp6vi9tr/333873068398253433
/tmp/adamTestMvnp6vi9tr/333873068398253433/ordered.sam
/tmp/adamTestMvnp6vi9tr/333873068398253433/.ordered.sam.crc
/tmp/adamTestMvnp6vi9tr/5221390708293935163
/tmp/adamTestMvnp6vi9tr/5221390708293935163/.sorted.lex.vcf.crc
/tmp/adamTestMvnp6vi9tr/5221390708293935163/sorted.lex.vcf
/tmp/adamTestMvnp6vi9tr/TempSuite6596388918737451225.adam
/tmp/adamTestMvnp6vi9tr/TempSuite6596388918737451225.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite6596388918737451225.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6596388918737451225.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6596388918737451225.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/TempSuite6596388918737451225.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite6596388918737451225.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/TempSuite6596388918737451225.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite6596388918737451225.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6596388918737451225.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6596388918737451225.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite6596388918737451225.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite6596388918737451225.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6596388918737451225.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6596388918737451225.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3798664580126944008
/tmp/adamTestMvnp6vi9tr/TempSuite8611266112635267492.bed
/tmp/adamTestMvnp6vi9tr/TempSuite8611266112635267492.bed/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8611266112635267492.bed/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite8611266112635267492.bed/part-00000
/tmp/adamTestMvnp6vi9tr/TempSuite8611266112635267492.bed/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/sample_coverage.bed365129264050377142.bed
/tmp/adamTestMvnp6vi9tr/.FeatureDatasetFunctionsSuite971042307642165320.bed.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2434438144421533296.bed
/tmp/adamTestMvnp6vi9tr/TempSuite2434438144421533296.bed/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2434438144421533296.bed/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite2434438144421533296.bed/part-00000
/tmp/adamTestMvnp6vi9tr/TempSuite2434438144421533296.bed/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/sorted.sam7183504826099443936.sam
/tmp/adamTestMvnp6vi9tr/TempSuite967517116374006529_1.fq
/tmp/adamTestMvnp6vi9tr/TempSuite967517116374006529_1.fq/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/TempSuite967517116374006529_1.fq/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite967517116374006529_1.fq/part-00000
/tmp/adamTestMvnp6vi9tr/TempSuite967517116374006529_1.fq/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/1666239467124953053
/tmp/adamTestMvnp6vi9tr/1666239467124953053/.artificial.cram.crc
/tmp/adamTestMvnp6vi9tr/1666239467124953053/artificial.cram
/tmp/adamTestMvnp6vi9tr/2026217801455506911
/tmp/adamTestMvnp6vi9tr/2026217801455506911/unordered.sam
/tmp/adamTestMvnp6vi9tr/2026217801455506911/.unordered.sam.crc
/tmp/adamTestMvnp6vi9tr/1603159530228-0
/tmp/adamTestMvnp6vi9tr/1603159530228-0/test.vcf
/tmp/adamTestMvnp6vi9tr/1603159530228-0/test.vcf/.part-r-00000.crc
/tmp/adamTestMvnp6vi9tr/1603159530228-0/test.vcf/_SUCCESS
/tmp/adamTestMvnp6vi9tr/1603159530228-0/test.vcf/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/1603159530228-0/test.vcf/part-r-00000
/tmp/adamTestMvnp6vi9tr/1603159530228-0/test_single.vcf
/tmp/adamTestMvnp6vi9tr/1603159530228-0/.test_single.vcf.crc
/tmp/adamTestMvnp6vi9tr/TempSuite9051769536400586133
/tmp/adamTestMvnp6vi9tr/6027233767330170938
/tmp/adamTestMvnp6vi9tr/6027233767330170938/unordered.bam
/tmp/adamTestMvnp6vi9tr/6027233767330170938/.unordered.bam.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4202529074963025580
/tmp/adamTestMvnp6vi9tr/TempSuite3246373573169401436.adam
/tmp/adamTestMvnp6vi9tr/TempSuite3246373573169401436.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite3246373573169401436.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite3246373573169401436.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3246373573169401436.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3246373573169401436.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite3246373573169401436.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite3246373573169401436.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3246373573169401436.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite3246373573169401436.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3246373573169401436.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite3246373573169401436.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3246373573169401436.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite3246373573169401436.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3246373573169401436.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite3246373573169401436.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3246373573169401436.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3246373573169401436.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3246373573169401436.adam/_header
/tmp/adamTestMvnp6vi9tr/TempSuite641788351767608269.sam
/tmp/adamTestMvnp6vi9tr/TempSuite641788351767608269.sam/part-r-00000.sam
/tmp/adamTestMvnp6vi9tr/TempSuite641788351767608269.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnp6vi9tr/TempSuite641788351767608269.sam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite641788351767608269.sam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3649973868210952519.fa
/tmp/adamTestMvnp6vi9tr/TempSuite3649973868210952519.fa/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3649973868210952519.fa/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite3649973868210952519.fa/part-00000
/tmp/adamTestMvnp6vi9tr/TempSuite3649973868210952519.fa/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5341633731809204065.bed
/tmp/adamTestMvnp6vi9tr/TempSuite5341633731809204065.bed/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5341633731809204065.bed/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite5341633731809204065.bed/part-00000
/tmp/adamTestMvnp6vi9tr/TempSuite5341633731809204065.bed/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite6878893271319507077
/tmp/adamTestMvnp6vi9tr/TempSuite3671819409314828768.adam
/tmp/adamTestMvnp6vi9tr/TempSuite3671819409314828768.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite3671819409314828768.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3671819409314828768.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite3671819409314828768.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite3671819409314828768.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3671819409314828768.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3671819409314828768.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite3671819409314828768.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite3671819409314828768.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3671819409314828768.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/javaAC6956313405494157851
/tmp/adamTestMvnp6vi9tr/javaAC6956313405494157851/testRdd.read.adam
/tmp/adamTestMvnp6vi9tr/javaAC6956313405494157851/testRdd.read.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/javaAC6956313405494157851/testRdd.read.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/javaAC6956313405494157851/testRdd.read.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/javaAC6956313405494157851/testRdd.read.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/javaAC6956313405494157851/testRdd.read.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/javaAC6956313405494157851/testRdd.read.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/javaAC6956313405494157851/testRdd.read.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/javaAC6956313405494157851/testRdd.read.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/javaAC6956313405494157851/testRdd.read.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/javaAC6956313405494157851/testRdd.read.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/javaAC6956313405494157851/testRdd.read.adam/_metadata
/tmp/adamTestMvnp6vi9tr/javaAC6956313405494157851/testRdd.read.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/javaAC6956313405494157851/testRdd.read.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/javaAC6956313405494157851/testRdd.read.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2162481232298950485.fa
/tmp/adamTestMvnp6vi9tr/TempSuite2162481232298950485.fa/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2162481232298950485.fa/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite2162481232298950485.fa/part-00000
/tmp/adamTestMvnp6vi9tr/TempSuite2162481232298950485.fa/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7266035396215110362
/tmp/adamTestMvnp6vi9tr/sample1.queryname.sam1773217473050439365.queryname.sam
/tmp/adamTestMvnp6vi9tr/TempSuite4953498484358532502
/tmp/adamTestMvnp6vi9tr/TempSuite3919975513584782022
/tmp/adamTestMvnp6vi9tr/TempSuite2058672449589150770.adam
/tmp/adamTestMvnp6vi9tr/TempSuite2058672449589150770.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite2058672449589150770.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2058672449589150770.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2058672449589150770.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/TempSuite2058672449589150770.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite2058672449589150770.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/TempSuite2058672449589150770.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite2058672449589150770.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2058672449589150770.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2058672449589150770.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite2058672449589150770.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite2058672449589150770.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2058672449589150770.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2058672449589150770.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/1603160010855-0
/tmp/adamTestMvnp6vi9tr/1603160010855-0/bqsr1-r2.fq
/tmp/adamTestMvnp6vi9tr/1603160010855-0/bqsr1-r2.fq/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/1603160010855-0/bqsr1-r2.fq/_SUCCESS
/tmp/adamTestMvnp6vi9tr/1603160010855-0/bqsr1-r2.fq/part-00000
/tmp/adamTestMvnp6vi9tr/1603160010855-0/bqsr1-r2.fq/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/1603160010855-0/bqsr1-r1.fq
/tmp/adamTestMvnp6vi9tr/1603160010855-0/bqsr1-r1.fq/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/1603160010855-0/bqsr1-r1.fq/_SUCCESS
/tmp/adamTestMvnp6vi9tr/1603160010855-0/bqsr1-r1.fq/part-00000
/tmp/adamTestMvnp6vi9tr/1603160010855-0/bqsr1-r1.fq/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3125362639147488652reads12.sam_2
/tmp/adamTestMvnp6vi9tr/TempSuite5967099349127023303
/tmp/adamTestMvnp6vi9tr/553638395038140290
/tmp/adamTestMvnp6vi9tr/553638395038140290/unordered.sam
/tmp/adamTestMvnp6vi9tr/553638395038140290/.unordered.sam.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7986857040715991058.adam
/tmp/adamTestMvnp6vi9tr/TempSuite7986857040715991058.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite7986857040715991058.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7986857040715991058.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7986857040715991058.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/TempSuite7986857040715991058.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite7986857040715991058.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/TempSuite7986857040715991058.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite7986857040715991058.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7986857040715991058.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7986857040715991058.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite7986857040715991058.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite7986857040715991058.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7986857040715991058.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7986857040715991058.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7547351717066394435
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite9183009447435377445
/tmp/adamTestMvnp6vi9tr/TempSuite8159694920255750971
/tmp/adamTestMvnp6vi9tr/TempSuite2197497560144109593.adam
/tmp/adamTestMvnp6vi9tr/TempSuite2197497560144109593.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2197497560144109593.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2197497560144109593.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/TempSuite2197497560144109593.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/TempSuite2197497560144109593.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite2197497560144109593.adam/_partitionedByStartPos
/tmp/adamTestMvnp6vi9tr/TempSuite2197497560144109593.adam/referenceName=1
/tmp/adamTestMvnp6vi9tr/TempSuite2197497560144109593.adam/referenceName=1/positionBin=26
/tmp/adamTestMvnp6vi9tr/TempSuite2197497560144109593.adam/referenceName=1/positionBin=26/.part-00000-9c393b57-c06e-4946-90b0-92bcceb580da.c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2197497560144109593.adam/referenceName=1/positionBin=26/part-00000-9c393b57-c06e-4946-90b0-92bcceb580da.c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite2197497560144109593.adam/referenceName=1/positionBin=240
/tmp/adamTestMvnp6vi9tr/TempSuite2197497560144109593.adam/referenceName=1/positionBin=240/.part-00000-9c393b57-c06e-4946-90b0-92bcceb580da.c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2197497560144109593.adam/referenceName=1/positionBin=240/part-00000-9c393b57-c06e-4946-90b0-92bcceb580da.c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite2197497560144109593.adam/._partitionedByStartPos.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2197497560144109593.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite2197497560144109593.adam/referenceName=2
/tmp/adamTestMvnp6vi9tr/TempSuite2197497560144109593.adam/referenceName=2/positionBin=189
/tmp/adamTestMvnp6vi9tr/TempSuite2197497560144109593.adam/referenceName=2/positionBin=189/.part-00000-9c393b57-c06e-4946-90b0-92bcceb580da.c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2197497560144109593.adam/referenceName=2/positionBin=189/part-00000-9c393b57-c06e-4946-90b0-92bcceb580da.c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite2197497560144109593.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2197497560144109593.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1628843533551566555.bed
/tmp/adamTestMvnp6vi9tr/TempSuite1628843533551566555.bed/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1628843533551566555.bed/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite1628843533551566555.bed/part-00000
/tmp/adamTestMvnp6vi9tr/TempSuite1628843533551566555.bed/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2197497560144109593
/tmp/adamTestMvnp6vi9tr/TempSuite6993903272280183737
/tmp/adamTestMvnp6vi9tr/TempSuite5327568692522014251.adam
/tmp/adamTestMvnp6vi9tr/TempSuite5327568692522014251.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite5327568692522014251.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5327568692522014251.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite5327568692522014251.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite5327568692522014251.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5327568692522014251.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5327568692522014251.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite5327568692522014251.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite5327568692522014251.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5327568692522014251.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5327568692522014251.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5327568692522014251.adam/_header
/tmp/adamTestMvnp6vi9tr/TempSuite5475078990765130189
/tmp/adamTestMvnp6vi9tr/TempSuite7493678478064371392.adam
/tmp/adamTestMvnp6vi9tr/TempSuite7493678478064371392.adam/.part-00002-61f38af1-ca65-472d-8217-da07884e57d2-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7493678478064371392.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7493678478064371392.adam/.part-00000-61f38af1-ca65-472d-8217-da07884e57d2-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7493678478064371392.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite7493678478064371392.adam/part-00002-61f38af1-ca65-472d-8217-da07884e57d2-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite7493678478064371392.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite7493678478064371392.adam/.part-00001-61f38af1-ca65-472d-8217-da07884e57d2-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7493678478064371392.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7493678478064371392.adam/part-00000-61f38af1-ca65-472d-8217-da07884e57d2-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite7493678478064371392.adam/part-00001-61f38af1-ca65-472d-8217-da07884e57d2-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite7714531388682530342.adam
/tmp/adamTestMvnp6vi9tr/TempSuite7714531388682530342.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite7714531388682530342.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7714531388682530342.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7714531388682530342.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/TempSuite7714531388682530342.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite7714531388682530342.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/TempSuite7714531388682530342.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite7714531388682530342.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7714531388682530342.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7714531388682530342.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite7714531388682530342.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite7714531388682530342.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7714531388682530342.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7714531388682530342.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8272303995182771648
/tmp/adamTestMvnp6vi9tr/TempSuite1251811825453236910
/tmp/adamTestMvnp6vi9tr/TempSuite8611266112635267492
/tmp/adamTestMvnp6vi9tr/1718831296160575445
/tmp/adamTestMvnp6vi9tr/1718831296160575445/unordered.sam
/tmp/adamTestMvnp6vi9tr/1718831296160575445/.unordered.sam.crc
/tmp/adamTestMvnp6vi9tr/sorted-variants.lex.vcf7911432830458306735.lex.vcf
/tmp/adamTestMvnp6vi9tr/TempSuite6974783748722409267.bed
/tmp/adamTestMvnp6vi9tr/TempSuite6974783748722409267.bed/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6974783748722409267.bed/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite6974783748722409267.bed/part-00000
/tmp/adamTestMvnp6vi9tr/TempSuite6974783748722409267.bed/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1964589944660081331.adam
/tmp/adamTestMvnp6vi9tr/TempSuite1964589944660081331.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1964589944660081331.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite1964589944660081331.adam/_partitionedByStartPos
/tmp/adamTestMvnp6vi9tr/TempSuite1964589944660081331.adam/referenceName=13
/tmp/adamTestMvnp6vi9tr/TempSuite1964589944660081331.adam/referenceName=13/positionBin=0
/tmp/adamTestMvnp6vi9tr/TempSuite1964589944660081331.adam/referenceName=13/positionBin=0/part-00000-3d507976-0823-4b02-aa2f-062955a46185.c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite1964589944660081331.adam/referenceName=13/positionBin=0/.part-00000-3d507976-0823-4b02-aa2f-062955a46185.c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1964589944660081331.adam/referenceName=1
/tmp/adamTestMvnp6vi9tr/TempSuite1964589944660081331.adam/referenceName=1/positionBin=0
/tmp/adamTestMvnp6vi9tr/TempSuite1964589944660081331.adam/referenceName=1/positionBin=0/part-00000-3d507976-0823-4b02-aa2f-062955a46185.c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite1964589944660081331.adam/referenceName=1/positionBin=0/.part-00000-3d507976-0823-4b02-aa2f-062955a46185.c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1964589944660081331.adam/._partitionedByStartPos.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1964589944660081331.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite1964589944660081331.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/TempSuite1964589944660081331.adam/referenceName=2
/tmp/adamTestMvnp6vi9tr/TempSuite1964589944660081331.adam/referenceName=2/positionBin=0
/tmp/adamTestMvnp6vi9tr/TempSuite1964589944660081331.adam/referenceName=2/positionBin=0/part-00000-3d507976-0823-4b02-aa2f-062955a46185.c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite1964589944660081331.adam/referenceName=2/positionBin=0/.part-00000-3d507976-0823-4b02-aa2f-062955a46185.c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1964589944660081331.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1964589944660081331.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1964589944660081331.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1964589944660081331.adam/_header
/tmp/adamTestMvnp6vi9tr/TempSuite1911108660893264389
/tmp/adamTestMvnp6vi9tr/TempSuite6631178493373822150.adam
/tmp/adamTestMvnp6vi9tr/TempSuite6631178493373822150.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite6631178493373822150.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6631178493373822150.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite6631178493373822150.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite6631178493373822150.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6631178493373822150.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6631178493373822150.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite6631178493373822150.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite6631178493373822150.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6631178493373822150.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6631178493373822150.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6631178493373822150.adam/_header
/tmp/adamTestMvnp6vi9tr/TempSuite6974783748722409267
/tmp/adamTestMvnp6vi9tr/TempSuite9209356779244870504
/tmp/adamTestMvnp6vi9tr/TempSuite6684680180898399848
/tmp/adamTestMvnp6vi9tr/4929867822994751831
/tmp/adamTestMvnp6vi9tr/4929867822994751831/predicate.3.adam
/tmp/adamTestMvnp6vi9tr/4929867822994751831/predicate.3.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/4929867822994751831/predicate.3.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/4929867822994751831/predicate.3.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/4929867822994751831/predicate.3.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/4929867822994751831/predicate.3.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/4929867822994751831/predicate.3.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/4929867822994751831/predicate.3.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/4929867822994751831/predicate.3.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/4929867822994751831/predicate.3.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/4929867822994751831/predicate.3.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/4929867822994751831/predicate.3.adam/_metadata
/tmp/adamTestMvnp6vi9tr/4929867822994751831/predicate.3.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/4929867822994751831/predicate.3.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/4929867822994751831/predicate.3.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1329526719223603940.adam
/tmp/adamTestMvnp6vi9tr/TempSuite1329526719223603940.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite1329526719223603940.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1329526719223603940.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite1329526719223603940.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite1329526719223603940.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1329526719223603940.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1329526719223603940.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite1329526719223603940.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/TempSuite1329526719223603940.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite1329526719223603940.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1329526719223603940.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1329526719223603940.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1329526719223603940.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1329526719223603940.adam/_header
/tmp/adamTestMvnp6vi9tr/TempSuite2493874423675201172.bam
/tmp/adamTestMvnp6vi9tr/6625809415493383415
/tmp/adamTestMvnp6vi9tr/6625809415493383415/.small.vcf.bgz.crc
/tmp/adamTestMvnp6vi9tr/6625809415493383415/small.vcf.bgz
/tmp/adamTestMvnp6vi9tr/TempSuite4015611359367922435.adam
/tmp/adamTestMvnp6vi9tr/TempSuite4015611359367922435.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite4015611359367922435.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4015611359367922435.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite4015611359367922435.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite4015611359367922435.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4015611359367922435.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4015611359367922435.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite4015611359367922435.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite4015611359367922435.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4015611359367922435.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4015611359367922435.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4015611359367922435.adam/_header
/tmp/adamTestMvnp6vi9tr/4376374861758604547
/tmp/adamTestMvnp6vi9tr/4376374861758604547/predicate.1.adam
/tmp/adamTestMvnp6vi9tr/4376374861758604547/predicate.1.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/4376374861758604547/predicate.1.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/4376374861758604547/predicate.1.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/4376374861758604547/predicate.1.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/4376374861758604547/predicate.1.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/4376374861758604547/predicate.1.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/4376374861758604547/predicate.1.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/4376374861758604547/predicate.1.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/4376374861758604547/predicate.1.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/4376374861758604547/predicate.1.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/4376374861758604547/predicate.1.adam/_metadata
/tmp/adamTestMvnp6vi9tr/4376374861758604547/predicate.1.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/4376374861758604547/predicate.1.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/4376374861758604547/predicate.1.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5416236487025736780
/tmp/adamTestMvnp6vi9tr/TempSuite8459394000709532101
/tmp/adamTestMvnp6vi9tr/TempSuite7610054855181270587.fa
/tmp/adamTestMvnp6vi9tr/TempSuite7610054855181270587.fa/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7610054855181270587.fa/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite7610054855181270587.fa/part-00000
/tmp/adamTestMvnp6vi9tr/TempSuite7610054855181270587.fa/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite5901687421381842107
/tmp/adamTestMvnp6vi9tr/TempSuite8459394000709532101.bed
/tmp/adamTestMvnp6vi9tr/TempSuite8459394000709532101.bed/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8459394000709532101.bed/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite8459394000709532101.bed/part-00000
/tmp/adamTestMvnp6vi9tr/TempSuite8459394000709532101.bed/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8677905615355571600.adam
/tmp/adamTestMvnp6vi9tr/TempSuite8677905615355571600.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite8677905615355571600.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8677905615355571600.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite8677905615355571600.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite8677905615355571600.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8677905615355571600.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8677905615355571600.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite8677905615355571600.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/TempSuite8677905615355571600.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite8677905615355571600.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8677905615355571600.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8677905615355571600.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8677905615355571600.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8677905615355571600.adam/_header
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4342089076155994124
/tmp/adamTestMvnp6vi9tr/TempSuite2687278615623947539.adam
/tmp/adamTestMvnp6vi9tr/TempSuite2687278615623947539.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2687278615623947539.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2687278615623947539.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/TempSuite2687278615623947539.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/TempSuite2687278615623947539.adam/.part-00000-2d835b52-a4f2-4026-bbef-05b2f43caaa4-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2687278615623947539.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite2687278615623947539.adam/part-00000-2d835b52-a4f2-4026-bbef-05b2f43caaa4-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite2687278615623947539.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite2687278615623947539.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2687278615623947539.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/hg19.chrM.2bit6502173902304746678.chrM.2bit
/tmp/adamTestMvnp6vi9tr/TempSuite3799525204925531049
/tmp/adamTestMvnp6vi9tr/TempSuite4035420096348090350.adam
/tmp/adamTestMvnp6vi9tr/TempSuite4035420096348090350.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite4035420096348090350.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4035420096348090350.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite4035420096348090350.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite4035420096348090350.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4035420096348090350.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4035420096348090350.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite4035420096348090350.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite4035420096348090350.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4035420096348090350.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4035420096348090350.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4035420096348090350.adam/_header
/tmp/adamTestMvnp6vi9tr/TempSuite3747803612395711091.adam
/tmp/adamTestMvnp6vi9tr/TempSuite3747803612395711091.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite3747803612395711091.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3747803612395711091.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite3747803612395711091.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite3747803612395711091.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3747803612395711091.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3747803612395711091.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite3747803612395711091.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite3747803612395711091.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3747803612395711091.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3747803612395711091.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3747803612395711091.adam/_header
/tmp/adamTestMvnp6vi9tr/TempSuite8042679093965729567.fq
/tmp/adamTestMvnp6vi9tr/TempSuite8042679093965729567.fq/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8042679093965729567.fq/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite8042679093965729567.fq/part-00000
/tmp/adamTestMvnp6vi9tr/TempSuite8042679093965729567.fq/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7010168583727370740
/tmp/adamTestMvnp6vi9tr/javaAC6878501528632182248
/tmp/adamTestMvnp6vi9tr/javaAC6878501528632182248/testRdd.genotype.adam
/tmp/adamTestMvnp6vi9tr/javaAC6878501528632182248/testRdd.genotype.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/javaAC6878501528632182248/testRdd.genotype.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/javaAC6878501528632182248/testRdd.genotype.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/javaAC6878501528632182248/testRdd.genotype.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/javaAC6878501528632182248/testRdd.genotype.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/javaAC6878501528632182248/testRdd.genotype.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/javaAC6878501528632182248/testRdd.genotype.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/javaAC6878501528632182248/testRdd.genotype.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/javaAC6878501528632182248/testRdd.genotype.adam/_metadata
/tmp/adamTestMvnp6vi9tr/javaAC6878501528632182248/testRdd.genotype.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/javaAC6878501528632182248/testRdd.genotype.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/javaAC6878501528632182248/testRdd.genotype.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/javaAC6878501528632182248/testRdd.genotype.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/javaAC6878501528632182248/testRdd.genotype.adam/_header
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite1261753458744471700.adam
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite1261753458744471700.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite1261753458744471700.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite1261753458744471700.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite1261753458744471700.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite1261753458744471700.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite1261753458744471700.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite1261753458744471700.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite1261753458744471700.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite1261753458744471700.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite1261753458744471700.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite1261753458744471700.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite1261753458744471700.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite1261753458744471700.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite1261753458744471700.adam/_metadata
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite1261753458744471700.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite1261753458744471700.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4919135702637535493
/tmp/adamTestMvnp6vi9tr/2459750735203739254
/tmp/adamTestMvnp6vi9tr/2459750735203739254/unordered.adam
/tmp/adamTestMvnp6vi9tr/2459750735203739254/unordered.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/2459750735203739254/unordered.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/2459750735203739254/unordered.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/2459750735203739254/unordered.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/2459750735203739254/unordered.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/2459750735203739254/unordered.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/2459750735203739254/unordered.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/2459750735203739254/unordered.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/2459750735203739254/unordered.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/2459750735203739254/unordered.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/2459750735203739254/unordered.adam/_metadata
/tmp/adamTestMvnp6vi9tr/2459750735203739254/unordered.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/2459750735203739254/unordered.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/2459750735203739254/unordered.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2434438144421533296
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite6684173626085612350
/tmp/adamTestMvnp6vi9tr/TempSuite1401130267944201014
/tmp/adamTestMvnp6vi9tr/TempSuite8812964990535757643
/tmp/adamTestMvnp6vi9tr/TempSuite3879290508134810664
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite151961379759889580.interval_list
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite151961379759889580.interval_list/.part-00003.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite151961379759889580.interval_list/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite151961379759889580.interval_list/_SUCCESS
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite151961379759889580.interval_list/part-00003
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite151961379759889580.interval_list/part-00000
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite151961379759889580.interval_list/part-00002
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite151961379759889580.interval_list/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite151961379759889580.interval_list/.part-00002.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite151961379759889580.interval_list/part-00001
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite151961379759889580.interval_list/.part-00001.crc
/tmp/adamTestMvnp6vi9tr/unordered.sam2114059571995370952.sam
/tmp/adamTestMvnp6vi9tr/7476986123579303232
/tmp/adamTestMvnp6vi9tr/7476986123579303232/unordered.bam
/tmp/adamTestMvnp6vi9tr/7476986123579303232/.unordered.bam.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3115779991529084461.adam
/tmp/adamTestMvnp6vi9tr/TempSuite3115779991529084461.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite3115779991529084461.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3115779991529084461.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite3115779991529084461.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite3115779991529084461.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3115779991529084461.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3115779991529084461.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite3115779991529084461.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/TempSuite3115779991529084461.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite3115779991529084461.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3115779991529084461.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3115779991529084461.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/5868894404526112237
/tmp/adamTestMvnp6vi9tr/5868894404526112237/.artificial.cram.crc
/tmp/adamTestMvnp6vi9tr/5868894404526112237/artificial.cram
/tmp/adamTestMvnp6vi9tr/TempSuite967517116374006529
/tmp/adamTestMvnp6vi9tr/TempSuite6631178493373822150
/tmp/adamTestMvnp6vi9tr/TempSuite8017599735452579562.bed
/tmp/adamTestMvnp6vi9tr/TempSuite8017599735452579562.bed/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8017599735452579562.bed/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite8017599735452579562.bed/part-00000
/tmp/adamTestMvnp6vi9tr/TempSuite8017599735452579562.bed/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/unordered.sam333903447932113310.sam
/tmp/adamTestMvnp6vi9tr/random.vcf1874343447532648610.vcf
/tmp/adamTestMvnp6vi9tr/TempSuite3289717497644568664
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite8158295730616986867
/tmp/adamTestMvnp6vi9tr/TempSuite5475078990765130189.adam
/tmp/adamTestMvnp6vi9tr/TempSuite5475078990765130189.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite5475078990765130189.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5475078990765130189.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5475078990765130189.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/TempSuite5475078990765130189.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite5475078990765130189.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/TempSuite5475078990765130189.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite5475078990765130189.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5475078990765130189.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5475078990765130189.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite5475078990765130189.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite5475078990765130189.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5475078990765130189.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5475078990765130189.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5156977245879059484.adam
/tmp/adamTestMvnp6vi9tr/TempSuite5156977245879059484.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite5156977245879059484.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite5156977245879059484.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5156977245879059484.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5156977245879059484.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite5156977245879059484.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite5156977245879059484.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5156977245879059484.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite5156977245879059484.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5156977245879059484.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite5156977245879059484.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5156977245879059484.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite5156977245879059484.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/TempSuite5156977245879059484.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5156977245879059484.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite5156977245879059484.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5156977245879059484.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5156977245879059484.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite6887769006514107346.fasta
/tmp/adamTestMvnp6vi9tr/4943855153594934173
/tmp/adamTestMvnp6vi9tr/4943855153594934173/genotypes.adam
/tmp/adamTestMvnp6vi9tr/4943855153594934173/genotypes.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/4943855153594934173/genotypes.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/4943855153594934173/genotypes.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/4943855153594934173/genotypes.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/4943855153594934173/genotypes.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/4943855153594934173/genotypes.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/4943855153594934173/genotypes.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/4943855153594934173/genotypes.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/4943855153594934173/genotypes.adam/_metadata
/tmp/adamTestMvnp6vi9tr/4943855153594934173/genotypes.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/4943855153594934173/genotypes.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/4943855153594934173/genotypes.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/4943855153594934173/genotypes.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/4943855153594934173/genotypes.adam/_header
/tmp/adamTestMvnp6vi9tr/TempSuite2247279484377061752.adam
/tmp/adamTestMvnp6vi9tr/TempSuite2247279484377061752.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite2247279484377061752.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite2247279484377061752.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2247279484377061752.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2247279484377061752.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite2247279484377061752.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite2247279484377061752.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2247279484377061752.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite2247279484377061752.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2247279484377061752.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite2247279484377061752.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2247279484377061752.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite2247279484377061752.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/TempSuite2247279484377061752.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2247279484377061752.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite2247279484377061752.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2247279484377061752.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2247279484377061752.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2429035286481088298
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite784137544223458321
/tmp/adamTestMvnp6vi9tr/random.vcf2419230107180134862.vcf
/tmp/adamTestMvnp6vi9tr/TempSuite257751458947788873
/tmp/adamTestMvnp6vi9tr/1458879162268951594
/tmp/adamTestMvnp6vi9tr/1458879162268951594/ordered.sam
/tmp/adamTestMvnp6vi9tr/1458879162268951594/.ordered.sam.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8179587587977208160.adam
/tmp/adamTestMvnp6vi9tr/TempSuite8179587587977208160.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8179587587977208160.adam/.part-00000-06f86f34-41ea-4fbc-8f5d-d1b28fbdf124-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8179587587977208160.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8179587587977208160.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/TempSuite8179587587977208160.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/TempSuite8179587587977208160.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite8179587587977208160.adam/part-00000-06f86f34-41ea-4fbc-8f5d-d1b28fbdf124-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite8179587587977208160.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite8179587587977208160.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8179587587977208160.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite2242228359199636517.interval_list
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite2242228359199636517.interval_list/.part-00003.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite2242228359199636517.interval_list/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite2242228359199636517.interval_list/_SUCCESS
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite2242228359199636517.interval_list/part-00003
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite2242228359199636517.interval_list/part-00000
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite2242228359199636517.interval_list/part-00002
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite2242228359199636517.interval_list/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite2242228359199636517.interval_list/.part-00002.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite2242228359199636517.interval_list/part-00001
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite2242228359199636517.interval_list/.part-00001.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4236717558836970799
/tmp/adamTestMvnp6vi9tr/unsorted.sam233004183525064520.sam
/tmp/adamTestMvnp6vi9tr/TempSuite4499857448659752310
/tmp/adamTestMvnp6vi9tr/TempSuite8361032342125043972
/tmp/adamTestMvnp6vi9tr/6100091292874444528
/tmp/adamTestMvnp6vi9tr/6100091292874444528/.artificial.cram.crc
/tmp/adamTestMvnp6vi9tr/6100091292874444528/artificial.cram
/tmp/adamTestMvnp6vi9tr/TempSuite6533199953547546264.adam
/tmp/adamTestMvnp6vi9tr/TempSuite6533199953547546264.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6533199953547546264.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite6533199953547546264.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite6533199953547546264.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6533199953547546264.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6533199953547546264.adam/part-00000-2c62bee4-1ee9-4cbb-8b31-6c52f5fcd5e2-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite6533199953547546264.adam/_header
/tmp/adamTestMvnp6vi9tr/TempSuite6533199953547546264.adam/.part-00000-2c62bee4-1ee9-4cbb-8b31-6c52f5fcd5e2-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2167056365490006944
/tmp/adamTestMvnp6vi9tr/TempSuite4121480216548783219.adam
/tmp/adamTestMvnp6vi9tr/TempSuite4121480216548783219.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite4121480216548783219.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite4121480216548783219.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4121480216548783219.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4121480216548783219.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite4121480216548783219.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite4121480216548783219.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4121480216548783219.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite4121480216548783219.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4121480216548783219.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite4121480216548783219.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4121480216548783219.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite4121480216548783219.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4121480216548783219.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite4121480216548783219.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4121480216548783219.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4121480216548783219.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4121480216548783219.adam/_header
/tmp/adamTestMvnp6vi9tr/TempSuite7255329154576435838
/tmp/adamTestMvnp6vi9tr/TempSuite4035420096348090350
/tmp/adamTestMvnp6vi9tr/TempSuite5183263949056576216
/tmp/adamTestMvnp6vi9tr/TempSuite733852142117484278
/tmp/adamTestMvnp6vi9tr/TempSuite1787005783170890805.adam
/tmp/adamTestMvnp6vi9tr/TempSuite1787005783170890805.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite1787005783170890805.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1787005783170890805.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite1787005783170890805.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite1787005783170890805.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1787005783170890805.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1787005783170890805.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite1787005783170890805.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite1787005783170890805.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1787005783170890805.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite113507710383963661
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4472624969604870379.interval_list
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4472624969604870379.interval_list/.part-00003.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4472624969604870379.interval_list/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4472624969604870379.interval_list/_SUCCESS
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4472624969604870379.interval_list/part-00003
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4472624969604870379.interval_list/part-00000
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4472624969604870379.interval_list/part-00002
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4472624969604870379.interval_list/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4472624969604870379.interval_list/.part-00002.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4472624969604870379.interval_list/part-00001
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4472624969604870379.interval_list/.part-00001.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4919135702637535493.adam
/tmp/adamTestMvnp6vi9tr/TempSuite4919135702637535493.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite4919135702637535493.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4919135702637535493.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite4919135702637535493.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite4919135702637535493.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4919135702637535493.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4919135702637535493.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite4919135702637535493.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/TempSuite4919135702637535493.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite4919135702637535493.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4919135702637535493.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4919135702637535493.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4919135702637535493.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4919135702637535493.adam/_header
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4360941730855853754
/tmp/adamTestMvnp6vi9tr/TempSuite3059780409199576522_1.fq
/tmp/adamTestMvnp6vi9tr/TempSuite3059780409199576522_1.fq/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3059780409199576522_1.fq/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite3059780409199576522_1.fq/part-00000
/tmp/adamTestMvnp6vi9tr/TempSuite3059780409199576522_1.fq/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite362401056452947178.adam
/tmp/adamTestMvnp6vi9tr/TempSuite362401056452947178.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite362401056452947178.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite362401056452947178.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite362401056452947178.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/TempSuite362401056452947178.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite362401056452947178.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/TempSuite362401056452947178.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite362401056452947178.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite362401056452947178.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite362401056452947178.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite362401056452947178.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite362401056452947178.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite362401056452947178.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite362401056452947178.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite393230916688508737.fastq
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite393230916688508737.fastq/.part-00003.crc
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite393230916688508737.fastq/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite393230916688508737.fastq/_SUCCESS
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite393230916688508737.fastq/part-00003
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite393230916688508737.fastq/part-00000
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite393230916688508737.fastq/part-00002
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite393230916688508737.fastq/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite393230916688508737.fastq/.part-00002.crc
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite393230916688508737.fastq/part-00001
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite393230916688508737.fastq/.part-00001.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7665808867357442155
/tmp/adamTestMvnp6vi9tr/TempSuite9055170288696486709.bed
/tmp/adamTestMvnp6vi9tr/TempSuite9055170288696486709.bed/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/TempSuite9055170288696486709.bed/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite9055170288696486709.bed/part-00000
/tmp/adamTestMvnp6vi9tr/TempSuite9055170288696486709.bed/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7287844328302739533.narrowPeak
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7287844328302739533.narrowPeak/.part-00003.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7287844328302739533.narrowPeak/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7287844328302739533.narrowPeak/_SUCCESS
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7287844328302739533.narrowPeak/part-00003
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7287844328302739533.narrowPeak/part-00000
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7287844328302739533.narrowPeak/part-00002
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7287844328302739533.narrowPeak/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7287844328302739533.narrowPeak/.part-00002.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7287844328302739533.narrowPeak/part-00001
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7287844328302739533.narrowPeak/.part-00001.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7168713476675100321
/tmp/adamTestMvnp6vi9tr/1943173626134014832
/tmp/adamTestMvnp6vi9tr/1943173626134014832/.readname_sorted.sam.crc
/tmp/adamTestMvnp6vi9tr/1943173626134014832/readname_sorted.sam
/tmp/adamTestMvnp6vi9tr/4387424515532400269
/tmp/adamTestMvnp6vi9tr/4387424515532400269/tag.sam
/tmp/adamTestMvnp6vi9tr/4387424515532400269/.tag.sam.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2397630669088588536.adam
/tmp/adamTestMvnp6vi9tr/TempSuite2397630669088588536.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite2397630669088588536.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2397630669088588536.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite2397630669088588536.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite2397630669088588536.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2397630669088588536.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2397630669088588536.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite2397630669088588536.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/TempSuite2397630669088588536.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite2397630669088588536.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2397630669088588536.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2397630669088588536.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2397630669088588536.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2397630669088588536.adam/_header
/tmp/adamTestMvnp6vi9tr/random.vcf4985250445117042658.vcf
/tmp/adamTestMvnp6vi9tr/TempSuite8728170887331629968.adam
/tmp/adamTestMvnp6vi9tr/TempSuite8728170887331629968.adam/.part-00001-2fd38db0-ca84-48cd-9513-0aacdf51e693-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8728170887331629968.adam/.part-00000-2fd38db0-ca84-48cd-9513-0aacdf51e693-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8728170887331629968.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8728170887331629968.adam/part-00001-2fd38db0-ca84-48cd-9513-0aacdf51e693-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite8728170887331629968.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite8728170887331629968.adam/.part-00002-2fd38db0-ca84-48cd-9513-0aacdf51e693-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8728170887331629968.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite8728170887331629968.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8728170887331629968.adam/part-00002-2fd38db0-ca84-48cd-9513-0aacdf51e693-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite8728170887331629968.adam/part-00000-2fd38db0-ca84-48cd-9513-0aacdf51e693-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite511014505389250816.fa
/tmp/adamTestMvnp6vi9tr/TempSuite511014505389250816.fa/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/TempSuite511014505389250816.fa/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite511014505389250816.fa/part-00000
/tmp/adamTestMvnp6vi9tr/TempSuite511014505389250816.fa/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7443241432961848648.gff3
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7443241432961848648.gff3/.part-00003.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7443241432961848648.gff3/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7443241432961848648.gff3/_SUCCESS
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7443241432961848648.gff3/part-00003
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7443241432961848648.gff3/part-00000
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7443241432961848648.gff3/part-00002
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7443241432961848648.gff3/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7443241432961848648.gff3/.part-00002.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7443241432961848648.gff3/part-00001
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7443241432961848648.gff3/.part-00001.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2697247165627191931
/tmp/adamTestMvnp6vi9tr/TempSuite1463874085668720866.adam
/tmp/adamTestMvnp6vi9tr/TempSuite1463874085668720866.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite1463874085668720866.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1463874085668720866.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1463874085668720866.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/TempSuite1463874085668720866.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite1463874085668720866.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/TempSuite1463874085668720866.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite1463874085668720866.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1463874085668720866.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1463874085668720866.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite1463874085668720866.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite1463874085668720866.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1463874085668720866.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1463874085668720866.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5891210723416883306
/tmp/adamTestMvnp6vi9tr/TempSuite8728127048588163485.adam
/tmp/adamTestMvnp6vi9tr/TempSuite8728127048588163485.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite8728127048588163485.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite8728127048588163485.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8728127048588163485.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8728127048588163485.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite8728127048588163485.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite8728127048588163485.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8728127048588163485.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite8728127048588163485.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8728127048588163485.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite8728127048588163485.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8728127048588163485.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite8728127048588163485.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8728127048588163485.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite8728127048588163485.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8728127048588163485.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/1603159104935-0
/tmp/adamTestMvnp6vi9tr/1603159104935-0/test.vcf
/tmp/adamTestMvnp6vi9tr/1603159104935-0/test.vcf/.part-r-00000.crc
/tmp/adamTestMvnp6vi9tr/1603159104935-0/test.vcf/_SUCCESS
/tmp/adamTestMvnp6vi9tr/1603159104935-0/test.vcf/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/1603159104935-0/test.vcf/part-r-00000
/tmp/adamTestMvnp6vi9tr/1603159104935-0/test_single.vcf
/tmp/adamTestMvnp6vi9tr/1603159104935-0/.test_single.vcf.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4029537756338159972.bed
/tmp/adamTestMvnp6vi9tr/TempSuite4029537756338159972.bed/.part-00003.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4029537756338159972.bed/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4029537756338159972.bed/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite4029537756338159972.bed/part-00003
/tmp/adamTestMvnp6vi9tr/TempSuite4029537756338159972.bed/part-00000
/tmp/adamTestMvnp6vi9tr/TempSuite4029537756338159972.bed/part-00002
/tmp/adamTestMvnp6vi9tr/TempSuite4029537756338159972.bed/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4029537756338159972.bed/.part-00002.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4029537756338159972.bed/part-00001
/tmp/adamTestMvnp6vi9tr/TempSuite4029537756338159972.bed/.part-00001.crc
/tmp/adamTestMvnp6vi9tr/TempSuite720077421628341610
/tmp/adamTestMvnp6vi9tr/sorted-variants.vcf8539110976724321832.vcf
/tmp/adamTestMvnp6vi9tr/TempSuite1145456065865478403
/tmp/adamTestMvnp6vi9tr/TempSuite4701962412691370053.bed
/tmp/adamTestMvnp6vi9tr/TempSuite4701962412691370053.bed/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4701962412691370053.bed/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite4701962412691370053.bed/part-00000
/tmp/adamTestMvnp6vi9tr/TempSuite4701962412691370053.bed/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/javaAC6520692071039180995
/tmp/adamTestMvnp6vi9tr/javaAC6520692071039180995/testRdd.slices.adam
/tmp/adamTestMvnp6vi9tr/javaAC6520692071039180995/testRdd.slices.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/javaAC6520692071039180995/testRdd.slices.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/javaAC6520692071039180995/testRdd.slices.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/javaAC6520692071039180995/testRdd.slices.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/javaAC6520692071039180995/testRdd.slices.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/javaAC6520692071039180995/testRdd.slices.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/javaAC6520692071039180995/testRdd.slices.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/javaAC6520692071039180995/testRdd.slices.adam/_metadata
/tmp/adamTestMvnp6vi9tr/javaAC6520692071039180995/testRdd.slices.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/javaAC6520692071039180995/testRdd.slices.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5096346962825499524.bed
/tmp/adamTestMvnp6vi9tr/TempSuite5096346962825499524.bed/.part-00003.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5096346962825499524.bed/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5096346962825499524.bed/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite5096346962825499524.bed/part-00003
/tmp/adamTestMvnp6vi9tr/TempSuite5096346962825499524.bed/part-00000
/tmp/adamTestMvnp6vi9tr/TempSuite5096346962825499524.bed/part-00002
/tmp/adamTestMvnp6vi9tr/TempSuite5096346962825499524.bed/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5096346962825499524.bed/.part-00002.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5096346962825499524.bed/part-00001
/tmp/adamTestMvnp6vi9tr/TempSuite5096346962825499524.bed/.part-00001.crc
/tmp/adamTestMvnp6vi9tr/9183569192858416298
/tmp/adamTestMvnp6vi9tr/9183569192858416298/genotypes.lex.adam
/tmp/adamTestMvnp6vi9tr/9183569192858416298/genotypes.lex.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/9183569192858416298/genotypes.lex.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/9183569192858416298/genotypes.lex.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/9183569192858416298/genotypes.lex.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/9183569192858416298/genotypes.lex.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/9183569192858416298/genotypes.lex.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/9183569192858416298/genotypes.lex.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/9183569192858416298/genotypes.lex.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/9183569192858416298/genotypes.lex.adam/_metadata
/tmp/adamTestMvnp6vi9tr/9183569192858416298/genotypes.lex.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/9183569192858416298/genotypes.lex.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/9183569192858416298/genotypes.lex.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/9183569192858416298/genotypes.lex.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/9183569192858416298/genotypes.lex.adam/_header
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite6177602036989975654
/tmp/adamTestMvnp6vi9tr/random.vcf2075817198624820061.vcf
/tmp/adamTestMvnp6vi9tr/TempSuite4029537756338159972
/tmp/adamTestMvnp6vi9tr/TempSuite8647817395291691088.adam
/tmp/adamTestMvnp6vi9tr/TempSuite8647817395291691088.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8647817395291691088.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite8647817395291691088.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite8647817395291691088.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/TempSuite8647817395291691088.adam/part-00000-ae8cda35-2358-41f0-8474-ef235a9d2205-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite8647817395291691088.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8647817395291691088.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8647817395291691088.adam/.part-00000-ae8cda35-2358-41f0-8474-ef235a9d2205-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8647817395291691088.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8647817395291691088.adam/_header
/tmp/adamTestMvnp6vi9tr/TempSuite2745085828070688279.adam
/tmp/adamTestMvnp6vi9tr/TempSuite2745085828070688279.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite2745085828070688279.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2745085828070688279.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite2745085828070688279.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite2745085828070688279.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2745085828070688279.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2745085828070688279.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite2745085828070688279.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/TempSuite2745085828070688279.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite2745085828070688279.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2745085828070688279.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2745085828070688279.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2745085828070688279.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2745085828070688279.adam/_header
/tmp/adamTestMvnp6vi9tr/TempSuite1833521889037240300.adam
/tmp/adamTestMvnp6vi9tr/TempSuite1833521889037240300.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite1833521889037240300.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite1833521889037240300.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1833521889037240300.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1833521889037240300.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite1833521889037240300.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite1833521889037240300.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1833521889037240300.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite1833521889037240300.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1833521889037240300.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite1833521889037240300.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1833521889037240300.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite1833521889037240300.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/TempSuite1833521889037240300.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1833521889037240300.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite1833521889037240300.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1833521889037240300.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1833521889037240300.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1833521889037240300.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1833521889037240300.adam/_header
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite1962057082908286357
/tmp/adamTestMvnp6vi9tr/TempSuite2697247165627191931.adam
/tmp/adamTestMvnp6vi9tr/TempSuite2697247165627191931.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2697247165627191931.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite2697247165627191931.adam/part-00000-444165e3-c5fb-4ab5-960e-6cc5a7711798-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite2697247165627191931.adam/.part-00000-444165e3-c5fb-4ab5-960e-6cc5a7711798-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2697247165627191931.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite2697247165627191931.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/TempSuite2697247165627191931.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2697247165627191931.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2697247165627191931.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2697247165627191931.adam/_header
/tmp/adamTestMvnp6vi9tr/TempSuite4143834238703747345
/tmp/adamTestMvnp6vi9tr/bqsr14970327116219281975
/tmp/adamTestMvnp6vi9tr/bqsr14970327116219281975/bqsr1.bam
/tmp/adamTestMvnp6vi9tr/bqsr14970327116219281975/.bqsr1.bam.crc
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite1256135696899291466
/tmp/adamTestMvnp6vi9tr/javaAC6146951785510115619
/tmp/adamTestMvnp6vi9tr/javaAC6146951785510115619/testRdd.fragment.adam
/tmp/adamTestMvnp6vi9tr/javaAC6146951785510115619/testRdd.fragment.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/javaAC6146951785510115619/testRdd.fragment.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/javaAC6146951785510115619/testRdd.fragment.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/javaAC6146951785510115619/testRdd.fragment.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/javaAC6146951785510115619/testRdd.fragment.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/javaAC6146951785510115619/testRdd.fragment.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/javaAC6146951785510115619/testRdd.fragment.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/javaAC6146951785510115619/testRdd.fragment.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/javaAC6146951785510115619/testRdd.fragment.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/javaAC6146951785510115619/testRdd.fragment.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/javaAC6146951785510115619/testRdd.fragment.adam/_metadata
/tmp/adamTestMvnp6vi9tr/javaAC6146951785510115619/testRdd.fragment.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/javaAC6146951785510115619/testRdd.fragment.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/javaAC6146951785510115619/testRdd.fragment.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7848544797983112552
/tmp/adamTestMvnp6vi9tr/.FeatureDatasetFunctionsSuite6878893271319507077.narrowPeak.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4100747980520390361
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite5132378738904802427
/tmp/adamTestMvnp6vi9tr/TempSuite145986948771187414.adam
/tmp/adamTestMvnp6vi9tr/TempSuite145986948771187414.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite145986948771187414.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite145986948771187414.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite145986948771187414.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite145986948771187414.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite145986948771187414.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite145986948771187414.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite145986948771187414.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/TempSuite145986948771187414.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite145986948771187414.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite145986948771187414.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite145986948771187414.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite145986948771187414.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite145986948771187414.adam/_header
/tmp/adamTestMvnp6vi9tr/TempSuite3709380385291783437.adam
/tmp/adamTestMvnp6vi9tr/TempSuite3709380385291783437.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3709380385291783437.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3709380385291783437.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/TempSuite3709380385291783437.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/TempSuite3709380385291783437.adam/part-00000-1997641a-1db9-41be-b852-42c78734304d-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite3709380385291783437.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite3709380385291783437.adam/.part-00000-1997641a-1db9-41be-b852-42c78734304d-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3709380385291783437.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite3709380385291783437.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3709380385291783437.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3533148427427676645.adam
/tmp/adamTestMvnp6vi9tr/TempSuite3533148427427676645.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite3533148427427676645.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3533148427427676645.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite3533148427427676645.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite3533148427427676645.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3533148427427676645.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3533148427427676645.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite3533148427427676645.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/TempSuite3533148427427676645.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite3533148427427676645.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3533148427427676645.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3533148427427676645.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3533148427427676645.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3533148427427676645.adam/_header
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite5340552365773206384
/tmp/adamTestMvnp6vi9tr/small.sam4165448323093737540.sam
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite90345737410421279
/tmp/adamTestMvnp6vi9tr/TempSuite781168865712112319.adam
/tmp/adamTestMvnp6vi9tr/TempSuite781168865712112319.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite781168865712112319.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite781168865712112319.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite781168865712112319.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite781168865712112319.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite781168865712112319.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite781168865712112319.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite781168865712112319.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/TempSuite781168865712112319.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite781168865712112319.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite781168865712112319.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite781168865712112319.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite781168865712112319.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite781168865712112319.adam/_header
/tmp/adamTestMvnp6vi9tr/TempSuite184676115806135977_2.fq
/tmp/adamTestMvnp6vi9tr/TempSuite8051319175736056568
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4351925970568150392.gtf
/tmp/adamTestMvnp6vi9tr/TempSuite362401056452947178
/tmp/adamTestMvnp6vi9tr/.TempSuite7945428461910845036_2.fq.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8570172958009944045.adam
/tmp/adamTestMvnp6vi9tr/TempSuite8570172958009944045.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite8570172958009944045.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8570172958009944045.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8570172958009944045.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/TempSuite8570172958009944045.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite8570172958009944045.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/TempSuite8570172958009944045.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite8570172958009944045.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8570172958009944045.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8570172958009944045.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite8570172958009944045.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite8570172958009944045.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8570172958009944045.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8570172958009944045.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite4045879464584384003
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite8976570640228936400.adam
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite8976570640228936400.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite8976570640228936400.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite8976570640228936400.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite8976570640228936400.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite8976570640228936400.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite8976570640228936400.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite8976570640228936400.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite8976570640228936400.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite8976570640228936400.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite8976570640228936400.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite8976570640228936400.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite8976570640228936400.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite8976570640228936400.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite8976570640228936400.adam/_metadata
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite8976570640228936400.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite8976570640228936400.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1602872343628323431
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite262631830503872068.gff3
/tmp/adamTestMvnp6vi9tr/TempSuite8051319175736056568.fq
/tmp/adamTestMvnp6vi9tr/TempSuite8051319175736056568.fq/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8051319175736056568.fq/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite8051319175736056568.fq/part-00000
/tmp/adamTestMvnp6vi9tr/TempSuite8051319175736056568.fq/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite5077441926135758810
/tmp/adamTestMvnp6vi9tr/TempSuite5445467135304389295
/tmp/adamTestMvnp6vi9tr/TempSuite7547351717066394435.adam
/tmp/adamTestMvnp6vi9tr/TempSuite7547351717066394435.adam/.part-00002-18dbf706-02a2-4713-a3bb-311630b99bf4-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7547351717066394435.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7547351717066394435.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7547351717066394435.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/TempSuite7547351717066394435.adam/part-00000-18dbf706-02a2-4713-a3bb-311630b99bf4-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite7547351717066394435.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/TempSuite7547351717066394435.adam/part-00002-18dbf706-02a2-4713-a3bb-311630b99bf4-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite7547351717066394435.adam/.part-00001-18dbf706-02a2-4713-a3bb-311630b99bf4-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7547351717066394435.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite7547351717066394435.adam/part-00001-18dbf706-02a2-4713-a3bb-311630b99bf4-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite7547351717066394435.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite7547351717066394435.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7547351717066394435.adam/.part-00000-18dbf706-02a2-4713-a3bb-311630b99bf4-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7547351717066394435.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/ordered.sam8879283661484166787.sam
/tmp/adamTestMvnp6vi9tr/TempSuite3099738864269716372.adam
/tmp/adamTestMvnp6vi9tr/TempSuite3099738864269716372.adam/part-00000-827a4ce9-552b-424e-bfaf-b79d88640c19-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite3099738864269716372.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3099738864269716372.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3099738864269716372.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/TempSuite3099738864269716372.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/TempSuite3099738864269716372.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite3099738864269716372.adam/.part-00000-827a4ce9-552b-424e-bfaf-b79d88640c19-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3099738864269716372.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite3099738864269716372.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3099738864269716372.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite983521086394517231
/tmp/adamTestMvnp6vi9tr/.TempSuite2681846289982821369.bam.crc
/tmp/adamTestMvnp6vi9tr/javaAC2449540509443805835
/tmp/adamTestMvnp6vi9tr/javaAC2449540509443805835/testRdd.coverage.adam
/tmp/adamTestMvnp6vi9tr/javaAC2449540509443805835/testRdd.coverage.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/javaAC2449540509443805835/testRdd.coverage.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnp6vi9tr/javaAC2449540509443805835/testRdd.coverage.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/javaAC2449540509443805835/testRdd.coverage.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/javaAC2449540509443805835/testRdd.coverage.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/javaAC2449540509443805835/testRdd.coverage.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/javaAC2449540509443805835/testRdd.coverage.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/javaAC2449540509443805835/testRdd.coverage.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnp6vi9tr/javaAC2449540509443805835/testRdd.coverage.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/javaAC2449540509443805835/testRdd.coverage.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnp6vi9tr/javaAC2449540509443805835/testRdd.coverage.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/javaAC2449540509443805835/testRdd.coverage.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/javaAC2449540509443805835/testRdd.coverage.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/javaAC2449540509443805835/testRdd.coverage.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/javaAC2449540509443805835/testRdd.coverage.adam/_metadata
/tmp/adamTestMvnp6vi9tr/javaAC2449540509443805835/testRdd.coverage.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/javaAC2449540509443805835/testRdd.coverage.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/javaAC2449540509443805835/testRdd.coverage.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3344956849657016726
/tmp/adamTestMvnp6vi9tr/TempSuite266871060368912198.bed
/tmp/adamTestMvnp6vi9tr/TempSuite266871060368912198.bed/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/TempSuite266871060368912198.bed/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite266871060368912198.bed/part-00000
/tmp/adamTestMvnp6vi9tr/TempSuite266871060368912198.bed/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8020906230245323354.adam
/tmp/adamTestMvnp6vi9tr/TempSuite8020906230245323354.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite8020906230245323354.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8020906230245323354.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8020906230245323354.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/TempSuite8020906230245323354.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite8020906230245323354.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/TempSuite8020906230245323354.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite8020906230245323354.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8020906230245323354.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8020906230245323354.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite8020906230245323354.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite8020906230245323354.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8020906230245323354.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8020906230245323354.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/random.vcf4895090871351266034.vcf
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite310029648828464068
/tmp/adamTestMvnp6vi9tr/unordered.sam7174450216980868901.sam
/tmp/adamTestMvnp6vi9tr/.FeatureDatasetFunctionsSuite5077441926135758810.gtf.crc
/tmp/adamTestMvnp6vi9tr/2604782109080288309
/tmp/adamTestMvnp6vi9tr/2604782109080288309/out.sam_tail
/tmp/adamTestMvnp6vi9tr/2604782109080288309/out.sam_tail/part-r-00000.sam
/tmp/adamTestMvnp6vi9tr/2604782109080288309/out.sam_tail/.part-r-00003.sam.crc
/tmp/adamTestMvnp6vi9tr/2604782109080288309/out.sam_tail/.part-r-00000.sam.crc
/tmp/adamTestMvnp6vi9tr/2604782109080288309/out.sam_tail/part-r-00001.sam
/tmp/adamTestMvnp6vi9tr/2604782109080288309/out.sam_tail/.part-r-00002.sam.crc
/tmp/adamTestMvnp6vi9tr/2604782109080288309/out.sam_tail/_SUCCESS
/tmp/adamTestMvnp6vi9tr/2604782109080288309/out.sam_tail/.part-r-00001.sam.crc
/tmp/adamTestMvnp6vi9tr/2604782109080288309/out.sam_tail/part-r-00003.sam
/tmp/adamTestMvnp6vi9tr/2604782109080288309/out.sam_tail/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/2604782109080288309/out.sam_tail/part-r-00002.sam
/tmp/adamTestMvnp6vi9tr/2604782109080288309/.out.sam.crc
/tmp/adamTestMvnp6vi9tr/2604782109080288309/out.sam
/tmp/adamTestMvnp6vi9tr/2604782109080288309/out.sam_head
/tmp/adamTestMvnp6vi9tr/2604782109080288309/.out.sam_head.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1815951368109920139
/tmp/adamTestMvnp6vi9tr/TempSuite4063368894917503283.bam
/tmp/adamTestMvnp6vi9tr/TempSuite4063368894917503283.bam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite4063368894917503283.bam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4063368894917503283.bam/.part-r-00000.bam.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4063368894917503283.bam/part-r-00000.bam
/tmp/adamTestMvnp6vi9tr/sorted-variants.lex.vcf5090756773609256375.lex.vcf
/tmp/adamTestMvnp6vi9tr/sorted.sam1460664069923329616.sam
/tmp/adamTestMvnp6vi9tr/TempSuite912697082425675855
/tmp/adamTestMvnp6vi9tr/.TempSuite4109427063543734977.sam.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5512951241664839463.adam
/tmp/adamTestMvnp6vi9tr/TempSuite5512951241664839463.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite5512951241664839463.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite5512951241664839463.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5512951241664839463.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5512951241664839463.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5512951241664839463.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/TempSuite5512951241664839463.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite5512951241664839463.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/TempSuite5512951241664839463.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite5512951241664839463.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5512951241664839463.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite5512951241664839463.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5512951241664839463.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite5512951241664839463.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5512951241664839463.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite5512951241664839463.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5512951241664839463.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite5512951241664839463.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5512951241664839463.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5512951241664839463.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8618941253455535370
/tmp/adamTestMvnp6vi9tr/TempSuite3099738864269716372
/tmp/adamTestMvnp6vi9tr/TempSuite1628843533551566555
/tmp/adamTestMvnp6vi9tr/TempSuite2334433064787590554
/tmp/adamTestMvnp6vi9tr/TempSuite8378096660118275651.adam
/tmp/adamTestMvnp6vi9tr/TempSuite8378096660118275651.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite8378096660118275651.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite8378096660118275651.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8378096660118275651.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8378096660118275651.adam/part-r-00004.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite8378096660118275651.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite8378096660118275651.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite8378096660118275651.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8378096660118275651.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite8378096660118275651.adam/.part-r-00004.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8378096660118275651.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8378096660118275651.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite8378096660118275651.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8378096660118275651.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite8378096660118275651.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/TempSuite8378096660118275651.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8378096660118275651.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite8378096660118275651.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8378096660118275651.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8378096660118275651.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5512951241664839463
/tmp/adamTestMvnp6vi9tr/TempSuite3124198357598331105.bam
/tmp/adamTestMvnp6vi9tr/TempSuite3124198357598331105.bam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite3124198357598331105.bam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3124198357598331105.bam/.part-r-00000.bam.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3124198357598331105.bam/part-r-00000.bam
/tmp/adamTestMvnp6vi9tr/TempSuite995815757067614064
/tmp/adamTestMvnp6vi9tr/TempSuite9019943713483017204.adam
/tmp/adamTestMvnp6vi9tr/TempSuite9019943713483017204.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite9019943713483017204.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite9019943713483017204.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite9019943713483017204.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite9019943713483017204.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite9019943713483017204.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite9019943713483017204.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite9019943713483017204.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite9019943713483017204.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite9019943713483017204.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite9019943713483017204.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite9019943713483017204.adam/_header
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7109618211641472649.gff3
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7109618211641472649.gff3/.part-00003.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7109618211641472649.gff3/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7109618211641472649.gff3/_SUCCESS
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7109618211641472649.gff3/part-00003
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7109618211641472649.gff3/part-00000
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7109618211641472649.gff3/part-00002
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7109618211641472649.gff3/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7109618211641472649.gff3/.part-00002.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7109618211641472649.gff3/part-00001
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7109618211641472649.gff3/.part-00001.crc
/tmp/adamTestMvnp6vi9tr/3762367152569045182
/tmp/adamTestMvnp6vi9tr/3762367152569045182/..gff3.crc
/tmp/adamTestMvnp6vi9tr/3762367152569045182/.gff3
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite8466067374448364541.adam
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite8466067374448364541.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite8466067374448364541.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite8466067374448364541.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite8466067374448364541.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite8466067374448364541.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite8466067374448364541.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite8466067374448364541.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite8466067374448364541.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite8466067374448364541.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite8466067374448364541.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite8466067374448364541.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite8466067374448364541.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite8466067374448364541.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite8466067374448364541.adam/_metadata
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite8466067374448364541.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite8466067374448364541.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite4909933601263367415
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite2158367834901293960.gtf
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite2158367834901293960.gtf/.part-00003.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite2158367834901293960.gtf/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite2158367834901293960.gtf/_SUCCESS
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite2158367834901293960.gtf/part-00003
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite2158367834901293960.gtf/part-00000
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite2158367834901293960.gtf/part-00002
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite2158367834901293960.gtf/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite2158367834901293960.gtf/.part-00002.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite2158367834901293960.gtf/part-00001
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite2158367834901293960.gtf/.part-00001.crc
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite7679849268327084162
/tmp/adamTestMvnp6vi9tr/.TempSuite5783277284735372964.bam.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite2748366040480703961.bed
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite2748366040480703961.bed/.part-00003.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite2748366040480703961.bed/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite2748366040480703961.bed/_SUCCESS
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite2748366040480703961.bed/part-00003
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite2748366040480703961.bed/part-00000
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite2748366040480703961.bed/part-00002
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite2748366040480703961.bed/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite2748366040480703961.bed/.part-00002.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite2748366040480703961.bed/part-00001
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite2748366040480703961.bed/.part-00001.crc
/tmp/adamTestMvnp6vi9tr/2601014904378695606
/tmp/adamTestMvnp6vi9tr/2601014904378695606/..gff3.crc
/tmp/adamTestMvnp6vi9tr/2601014904378695606/.gff3
/tmp/adamTestMvnp6vi9tr/TempSuite5524108689765058947.sam
/tmp/adamTestMvnp6vi9tr/TempSuite5524108689765058947.sam/part-r-00000.sam
/tmp/adamTestMvnp6vi9tr/TempSuite5524108689765058947.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5524108689765058947.sam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite5524108689765058947.sam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/1017398327144248068
/tmp/adamTestMvnp6vi9tr/TempSuite3578279995584905942
/tmp/adamTestMvnp6vi9tr/trinity.fa287199947381125256.fa
/tmp/adamTestMvnp6vi9tr/TempSuite7728783544143978074.sam
/tmp/adamTestMvnp6vi9tr/TempSuite7728783544143978074.sam/part-r-00000.sam
/tmp/adamTestMvnp6vi9tr/TempSuite7728783544143978074.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7728783544143978074.sam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite7728783544143978074.sam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4316748237787134600
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite3975244108371464907
/tmp/adamTestMvnp6vi9tr/TempSuite5554454455292328117.adam
/tmp/adamTestMvnp6vi9tr/TempSuite5554454455292328117.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite5554454455292328117.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite5554454455292328117.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5554454455292328117.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5554454455292328117.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5554454455292328117.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/TempSuite5554454455292328117.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite5554454455292328117.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/TempSuite5554454455292328117.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite5554454455292328117.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5554454455292328117.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite5554454455292328117.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5554454455292328117.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite5554454455292328117.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5554454455292328117.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite5554454455292328117.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5554454455292328117.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite5554454455292328117.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5554454455292328117.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5554454455292328117.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/unordered.sam7990335728952590988.sam
/tmp/adamTestMvnp6vi9tr/5277886418162232416
/tmp/adamTestMvnp6vi9tr/5277886418162232416/unordered.sam
/tmp/adamTestMvnp6vi9tr/5277886418162232416/.unordered.sam.crc
/tmp/adamTestMvnp6vi9tr/unordered.sam6412104792576613952.sam
/tmp/adamTestMvnp6vi9tr/TempSuite5215830893314511283.sam
/tmp/adamTestMvnp6vi9tr/TempSuite5215830893314511283.sam/part-r-00000.sam
/tmp/adamTestMvnp6vi9tr/TempSuite5215830893314511283.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5215830893314511283.sam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite5215830893314511283.sam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/.FeatureDatasetFunctionsSuite7618960274275388769.bed.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7287844328302739533
/tmp/adamTestMvnp6vi9tr/TempSuite1833521889037240300
/tmp/adamTestMvnp6vi9tr/TempSuite1116486192798401344_1.fq
/tmp/adamTestMvnp6vi9tr/TempSuite1391052640954571849.adam
/tmp/adamTestMvnp6vi9tr/TempSuite1391052640954571849.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite1391052640954571849.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite1391052640954571849.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1391052640954571849.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1391052640954571849.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite1391052640954571849.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite1391052640954571849.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1391052640954571849.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite1391052640954571849.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1391052640954571849.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite1391052640954571849.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1391052640954571849.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite1391052640954571849.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/TempSuite1391052640954571849.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1391052640954571849.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite1391052640954571849.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1391052640954571849.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1391052640954571849.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite5396957064731648332.narrowPeak
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite5396957064731648332.narrowPeak/.part-00003.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite5396957064731648332.narrowPeak/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite5396957064731648332.narrowPeak/_SUCCESS
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite5396957064731648332.narrowPeak/part-00003
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite5396957064731648332.narrowPeak/part-00000
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite5396957064731648332.narrowPeak/part-00002
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite5396957064731648332.narrowPeak/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite5396957064731648332.narrowPeak/.part-00002.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite5396957064731648332.narrowPeak/part-00001
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite5396957064731648332.narrowPeak/.part-00001.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4335385040091154255
/tmp/adamTestMvnp6vi9tr/TempSuite512994662873630460.adam
/tmp/adamTestMvnp6vi9tr/TempSuite512994662873630460.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite512994662873630460.adam/part-00000-1d1ecfca-8131-44ad-b12a-70aca4c891b9-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite512994662873630460.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite512994662873630460.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite512994662873630460.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/TempSuite512994662873630460.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite512994662873630460.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite512994662873630460.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite512994662873630460.adam/_header
/tmp/adamTestMvnp6vi9tr/TempSuite512994662873630460.adam/.part-00000-1d1ecfca-8131-44ad-b12a-70aca4c891b9-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4460756065036150717fragments.adam
/tmp/adamTestMvnp6vi9tr/TempSuite4460756065036150717fragments.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite4460756065036150717fragments.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4460756065036150717fragments.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4460756065036150717fragments.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/TempSuite4460756065036150717fragments.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite4460756065036150717fragments.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/TempSuite4460756065036150717fragments.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite4460756065036150717fragments.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4460756065036150717fragments.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4460756065036150717fragments.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite4460756065036150717fragments.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite4460756065036150717fragments.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4460756065036150717fragments.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4460756065036150717fragments.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7358218930466009141.bed
/tmp/adamTestMvnp6vi9tr/TempSuite7358218930466009141.bed/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7358218930466009141.bed/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite7358218930466009141.bed/part-00000
/tmp/adamTestMvnp6vi9tr/TempSuite7358218930466009141.bed/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6220220784266990685
/tmp/adamTestMvnp6vi9tr/2430390460848688372
/tmp/adamTestMvnp6vi9tr/2430390460848688372/out.sam_tail
/tmp/adamTestMvnp6vi9tr/2430390460848688372/out.sam_tail/part-r-00000.sam
/tmp/adamTestMvnp6vi9tr/2430390460848688372/out.sam_tail/.part-r-00003.sam.crc
/tmp/adamTestMvnp6vi9tr/2430390460848688372/out.sam_tail/.part-r-00000.sam.crc
/tmp/adamTestMvnp6vi9tr/2430390460848688372/out.sam_tail/part-r-00001.sam
/tmp/adamTestMvnp6vi9tr/2430390460848688372/out.sam_tail/.part-r-00002.sam.crc
/tmp/adamTestMvnp6vi9tr/2430390460848688372/out.sam_tail/_SUCCESS
/tmp/adamTestMvnp6vi9tr/2430390460848688372/out.sam_tail/.part-r-00001.sam.crc
/tmp/adamTestMvnp6vi9tr/2430390460848688372/out.sam_tail/part-r-00003.sam
/tmp/adamTestMvnp6vi9tr/2430390460848688372/out.sam_tail/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/2430390460848688372/out.sam_tail/part-r-00002.sam
/tmp/adamTestMvnp6vi9tr/2430390460848688372/.out.sam.crc
/tmp/adamTestMvnp6vi9tr/2430390460848688372/out.sam
/tmp/adamTestMvnp6vi9tr/2430390460848688372/out.sam_head
/tmp/adamTestMvnp6vi9tr/2430390460848688372/.out.sam_head.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7237752872774906456
/tmp/adamTestMvnp6vi9tr/ordered.sam8636914641718757285.sam
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite6878893271319507077.narrowPeak
/tmp/adamTestMvnp6vi9tr/TempSuite6684078277618125291.bed
/tmp/adamTestMvnp6vi9tr/TempSuite6684078277618125291.bed/.part-00003.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6684078277618125291.bed/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6684078277618125291.bed/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite6684078277618125291.bed/part-00003
/tmp/adamTestMvnp6vi9tr/TempSuite6684078277618125291.bed/part-00000
/tmp/adamTestMvnp6vi9tr/TempSuite6684078277618125291.bed/part-00002
/tmp/adamTestMvnp6vi9tr/TempSuite6684078277618125291.bed/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6684078277618125291.bed/.part-00002.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6684078277618125291.bed/part-00001
/tmp/adamTestMvnp6vi9tr/TempSuite6684078277618125291.bed/.part-00001.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1562631585291142788.adam
/tmp/adamTestMvnp6vi9tr/TempSuite1562631585291142788.adam/part-00002-22875380-987e-415b-80a6-aa02c2aeace8-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite1562631585291142788.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1562631585291142788.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1562631585291142788.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/TempSuite1562631585291142788.adam/.part-00001-22875380-987e-415b-80a6-aa02c2aeace8-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1562631585291142788.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/TempSuite1562631585291142788.adam/part-00000-22875380-987e-415b-80a6-aa02c2aeace8-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite1562631585291142788.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite1562631585291142788.adam/part-00001-22875380-987e-415b-80a6-aa02c2aeace8-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite1562631585291142788.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite1562631585291142788.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1562631585291142788.adam/.part-00002-22875380-987e-415b-80a6-aa02c2aeace8-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1562631585291142788.adam/.part-00000-22875380-987e-415b-80a6-aa02c2aeace8-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1562631585291142788.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite2158367834901293960
/tmp/adamTestMvnp6vi9tr/TempSuite2748329927925629498.bed
/tmp/adamTestMvnp6vi9tr/TempSuite2748329927925629498.bed/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2748329927925629498.bed/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite2748329927925629498.bed/part-00000
/tmp/adamTestMvnp6vi9tr/TempSuite2748329927925629498.bed/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite4909933601263367415.adam
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite4909933601263367415.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite4909933601263367415.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite4909933601263367415.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite4909933601263367415.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite4909933601263367415.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite4909933601263367415.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite4909933601263367415.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite4909933601263367415.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite4909933601263367415.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite4909933601263367415.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite4909933601263367415.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite4909933601263367415.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite4909933601263367415.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite4909933601263367415.adam/_metadata
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite4909933601263367415.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite4909933601263367415.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5743425212739346109
/tmp/adamTestMvnp6vi9tr/TempSuite5942676900371825932.fa
/tmp/adamTestMvnp6vi9tr/TempSuite5942676900371825932.fa/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5942676900371825932.fa/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite5942676900371825932.fa/part-00000
/tmp/adamTestMvnp6vi9tr/TempSuite5942676900371825932.fa/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3361593851421970326.adam
/tmp/adamTestMvnp6vi9tr/TempSuite3361593851421970326.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite3361593851421970326.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3361593851421970326.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite3361593851421970326.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite3361593851421970326.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3361593851421970326.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3361593851421970326.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite3361593851421970326.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/TempSuite3361593851421970326.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite3361593851421970326.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3361593851421970326.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3361593851421970326.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3361593851421970326.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3361593851421970326.adam/_header
/tmp/adamTestMvnp6vi9tr/TempSuite4747885754508939441.adam
/tmp/adamTestMvnp6vi9tr/TempSuite4747885754508939441.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite4747885754508939441.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4747885754508939441.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite4747885754508939441.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite4747885754508939441.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4747885754508939441.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4747885754508939441.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite4747885754508939441.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite4747885754508939441.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4747885754508939441.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/reads29267601153777594
/tmp/adamTestMvnp6vi9tr/reads29267601153777594/reads1.fq
/tmp/adamTestMvnp6vi9tr/reads29267601153777594/reads1.fq/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/reads29267601153777594/reads1.fq/_SUCCESS
/tmp/adamTestMvnp6vi9tr/reads29267601153777594/reads1.fq/part-00000
/tmp/adamTestMvnp6vi9tr/reads29267601153777594/reads1.fq/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/reads29267601153777594/reads2.fq
/tmp/adamTestMvnp6vi9tr/reads29267601153777594/reads2.fq/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/reads29267601153777594/reads2.fq/_SUCCESS
/tmp/adamTestMvnp6vi9tr/reads29267601153777594/reads2.fq/part-00000
/tmp/adamTestMvnp6vi9tr/reads29267601153777594/reads2.fq/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8937744559898843958
/tmp/adamTestMvnp6vi9tr/TempSuite5156977245879059484
/tmp/adamTestMvnp6vi9tr/TempSuite5353602775656277264
/tmp/adamTestMvnp6vi9tr/TempSuite3052112768913181674
/tmp/adamTestMvnp6vi9tr/TempSuite9032243792813585598.bed
/tmp/adamTestMvnp6vi9tr/TempSuite9032243792813585598.bed/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/TempSuite9032243792813585598.bed/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite9032243792813585598.bed/part-00000
/tmp/adamTestMvnp6vi9tr/TempSuite9032243792813585598.bed/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite1208052739707859293
/tmp/adamTestMvnp6vi9tr/TempSuite1976525752313132007.adam
/tmp/adamTestMvnp6vi9tr/TempSuite1976525752313132007.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite1976525752313132007.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1976525752313132007.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite1976525752313132007.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite1976525752313132007.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1976525752313132007.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1976525752313132007.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite1976525752313132007.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite1976525752313132007.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1976525752313132007.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3553198776271155492
/tmp/adamTestMvnp6vi9tr/TempSuite8775549862236868945
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite81852972370727914.narrowPeak
/tmp/adamTestMvnp6vi9tr/TempSuite3652798431133787858.adam
/tmp/adamTestMvnp6vi9tr/TempSuite3652798431133787858.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3652798431133787858.adam/.part-00001-53704cf5-53bb-4be3-8da4-74f379a8ee52-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3652798431133787858.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite3652798431133787858.adam/part-00000-53704cf5-53bb-4be3-8da4-74f379a8ee52-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite3652798431133787858.adam/part-00002-53704cf5-53bb-4be3-8da4-74f379a8ee52-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite3652798431133787858.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite3652798431133787858.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/TempSuite3652798431133787858.adam/.part-00000-53704cf5-53bb-4be3-8da4-74f379a8ee52-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3652798431133787858.adam/part-00001-53704cf5-53bb-4be3-8da4-74f379a8ee52-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite3652798431133787858.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3652798431133787858.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3652798431133787858.adam/.part-00002-53704cf5-53bb-4be3-8da4-74f379a8ee52-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3652798431133787858.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3652798431133787858.adam/_header
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4985874277185164714.narrowPeak
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4985874277185164714.narrowPeak/.part-00003.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4985874277185164714.narrowPeak/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4985874277185164714.narrowPeak/_SUCCESS
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4985874277185164714.narrowPeak/part-00003
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4985874277185164714.narrowPeak/part-00000
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4985874277185164714.narrowPeak/part-00002
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4985874277185164714.narrowPeak/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4985874277185164714.narrowPeak/.part-00002.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4985874277185164714.narrowPeak/part-00001
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4985874277185164714.narrowPeak/.part-00001.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3123532763834492030.adam
/tmp/adamTestMvnp6vi9tr/TempSuite3123532763834492030.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite3123532763834492030.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3123532763834492030.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite3123532763834492030.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite3123532763834492030.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3123532763834492030.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3123532763834492030.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite3123532763834492030.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite3123532763834492030.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3123532763834492030.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3123532763834492030.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3123532763834492030.adam/_header
/tmp/adamTestMvnp6vi9tr/TempSuite4797366273947967812
/tmp/adamTestMvnp6vi9tr/.FeatureDatasetFunctionsSuite1006712531631524833.bed.crc
/tmp/adamTestMvnp6vi9tr/javaAC6772004295762581902
/tmp/adamTestMvnp6vi9tr/javaAC6772004295762581902/testRdd.feature.adam
/tmp/adamTestMvnp6vi9tr/javaAC6772004295762581902/testRdd.feature.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/javaAC6772004295762581902/testRdd.feature.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnp6vi9tr/javaAC6772004295762581902/testRdd.feature.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/javaAC6772004295762581902/testRdd.feature.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/javaAC6772004295762581902/testRdd.feature.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/javaAC6772004295762581902/testRdd.feature.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/javaAC6772004295762581902/testRdd.feature.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/javaAC6772004295762581902/testRdd.feature.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnp6vi9tr/javaAC6772004295762581902/testRdd.feature.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/javaAC6772004295762581902/testRdd.feature.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnp6vi9tr/javaAC6772004295762581902/testRdd.feature.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/javaAC6772004295762581902/testRdd.feature.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/javaAC6772004295762581902/testRdd.feature.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/javaAC6772004295762581902/testRdd.feature.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/javaAC6772004295762581902/testRdd.feature.adam/_metadata
/tmp/adamTestMvnp6vi9tr/javaAC6772004295762581902/testRdd.feature.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/javaAC6772004295762581902/testRdd.feature.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/javaAC6772004295762581902/testRdd.feature.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8042679093965729567
/tmp/adamTestMvnp6vi9tr/6010084085258129119
/tmp/adamTestMvnp6vi9tr/8234570021646482271
/tmp/adamTestMvnp6vi9tr/8234570021646482271/predicate.1.adam
/tmp/adamTestMvnp6vi9tr/8234570021646482271/predicate.1.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/8234570021646482271/predicate.1.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/8234570021646482271/predicate.1.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/8234570021646482271/predicate.1.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/8234570021646482271/predicate.1.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/8234570021646482271/predicate.1.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/8234570021646482271/predicate.1.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/8234570021646482271/predicate.1.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/8234570021646482271/predicate.1.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/8234570021646482271/predicate.1.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/8234570021646482271/predicate.1.adam/_metadata
/tmp/adamTestMvnp6vi9tr/8234570021646482271/predicate.1.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/8234570021646482271/predicate.1.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/8234570021646482271/predicate.1.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/random.vcf5560310117075744749.vcf
/tmp/adamTestMvnp6vi9tr/ordered.sam163045072047158782.sam
/tmp/adamTestMvnp6vi9tr/5253261659040891498
/tmp/adamTestMvnp6vi9tr/5253261659040891498/unordered.sam
/tmp/adamTestMvnp6vi9tr/5253261659040891498/.unordered.sam.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4015970437123897577
/tmp/adamTestMvnp6vi9tr/TempSuite4075008614795996609.adam
/tmp/adamTestMvnp6vi9tr/TempSuite4075008614795996609.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite4075008614795996609.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4075008614795996609.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite4075008614795996609.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite4075008614795996609.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4075008614795996609.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4075008614795996609.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite4075008614795996609.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite4075008614795996609.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4075008614795996609.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4075008614795996609.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4075008614795996609.adam/_header
/tmp/adamTestMvnp6vi9tr/TempSuite2103524908836257562
/tmp/adamTestMvnp6vi9tr/TempSuite2748329927925629498
/tmp/adamTestMvnp6vi9tr/TempSuite7610054855181270587
/tmp/adamTestMvnp6vi9tr/TempSuite3652798431133787858
/tmp/adamTestMvnp6vi9tr/TempSuite6789942263142134697
/tmp/adamTestMvnp6vi9tr/TempSuite4532647212046991121
/tmp/adamTestMvnp6vi9tr/607706324181813995
/tmp/adamTestMvnp6vi9tr/607706324181813995/unordered.sam
/tmp/adamTestMvnp6vi9tr/607706324181813995/.unordered.sam.crc
/tmp/adamTestMvnp6vi9tr/1603160045662-0
/tmp/adamTestMvnp6vi9tr/1603160045662-0/bqsr1-r2.fq
/tmp/adamTestMvnp6vi9tr/1603160045662-0/bqsr1-r2.fq/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/1603160045662-0/bqsr1-r2.fq/_SUCCESS
/tmp/adamTestMvnp6vi9tr/1603160045662-0/bqsr1-r2.fq/part-00000
/tmp/adamTestMvnp6vi9tr/1603160045662-0/bqsr1-r2.fq/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/1603160045662-0/bqsr1-r1.fq
/tmp/adamTestMvnp6vi9tr/1603160045662-0/bqsr1-r1.fq/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/1603160045662-0/bqsr1-r1.fq/_SUCCESS
/tmp/adamTestMvnp6vi9tr/1603160045662-0/bqsr1-r1.fq/part-00000
/tmp/adamTestMvnp6vi9tr/1603160045662-0/bqsr1-r1.fq/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite9106590412879342439.adam
/tmp/adamTestMvnp6vi9tr/TempSuite9106590412879342439.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite9106590412879342439.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite9106590412879342439.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite9106590412879342439.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/TempSuite9106590412879342439.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite9106590412879342439.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/TempSuite9106590412879342439.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite9106590412879342439.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite9106590412879342439.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite9106590412879342439.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite9106590412879342439.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite9106590412879342439.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite9106590412879342439.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite9106590412879342439.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1498182108236507307.adam
/tmp/adamTestMvnp6vi9tr/TempSuite1498182108236507307.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1498182108236507307.adam/.part-00000-fdadc119-2900-4712-b05f-6c60bb9e5a9f-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1498182108236507307.adam/.part-00001-fdadc119-2900-4712-b05f-6c60bb9e5a9f-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1498182108236507307.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1498182108236507307.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/TempSuite1498182108236507307.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/TempSuite1498182108236507307.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite1498182108236507307.adam/part-00002-fdadc119-2900-4712-b05f-6c60bb9e5a9f-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite1498182108236507307.adam/part-00000-fdadc119-2900-4712-b05f-6c60bb9e5a9f-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite1498182108236507307.adam/.part-00002-fdadc119-2900-4712-b05f-6c60bb9e5a9f-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1498182108236507307.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite1498182108236507307.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1498182108236507307.adam/part-00001-fdadc119-2900-4712-b05f-6c60bb9e5a9f-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite1498182108236507307.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3989445448121712567_1.fq
/tmp/adamTestMvnp6vi9tr/TempSuite3989445448121712567_1.fq/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3989445448121712567_1.fq/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite3989445448121712567_1.fq/part-00000
/tmp/adamTestMvnp6vi9tr/TempSuite3989445448121712567_1.fq/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite92893774413366418
/tmp/adamTestMvnp6vi9tr/TempSuite2692150915134797162
/tmp/adamTestMvnp6vi9tr/TempSuite6152318826849165132
/tmp/adamTestMvnp6vi9tr/3467135638636566179
/tmp/adamTestMvnp6vi9tr/3467135638636566179/unordered.adam
/tmp/adamTestMvnp6vi9tr/3467135638636566179/unordered.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/3467135638636566179/unordered.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/3467135638636566179/unordered.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/3467135638636566179/unordered.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/3467135638636566179/unordered.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/3467135638636566179/unordered.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/3467135638636566179/unordered.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/3467135638636566179/unordered.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/3467135638636566179/unordered.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/3467135638636566179/unordered.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/3467135638636566179/unordered.adam/_metadata
/tmp/adamTestMvnp6vi9tr/3467135638636566179/unordered.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/3467135638636566179/unordered.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/3467135638636566179/unordered.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite5473229968341215281
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7266035396215110362.interval_list
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7266035396215110362.interval_list/.part-00003.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7266035396215110362.interval_list/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7266035396215110362.interval_list/_SUCCESS
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7266035396215110362.interval_list/part-00003
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7266035396215110362.interval_list/part-00000
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7266035396215110362.interval_list/part-00002
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7266035396215110362.interval_list/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7266035396215110362.interval_list/.part-00002.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7266035396215110362.interval_list/part-00001
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7266035396215110362.interval_list/.part-00001.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite8344849461554449775.narrowPeak
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite8344849461554449775.narrowPeak/.part-00003.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite8344849461554449775.narrowPeak/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite8344849461554449775.narrowPeak/_SUCCESS
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite8344849461554449775.narrowPeak/part-00003
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite8344849461554449775.narrowPeak/part-00000
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite8344849461554449775.narrowPeak/part-00002
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite8344849461554449775.narrowPeak/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite8344849461554449775.narrowPeak/.part-00002.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite8344849461554449775.narrowPeak/part-00001
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite8344849461554449775.narrowPeak/.part-00001.crc
/tmp/adamTestMvnp6vi9tr/javaAC654791780388976416
/tmp/adamTestMvnp6vi9tr/javaAC654791780388976416/testRdd.sequences.adam
/tmp/adamTestMvnp6vi9tr/javaAC654791780388976416/testRdd.sequences.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/javaAC654791780388976416/testRdd.sequences.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/javaAC654791780388976416/testRdd.sequences.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/javaAC654791780388976416/testRdd.sequences.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/javaAC654791780388976416/testRdd.sequences.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/javaAC654791780388976416/testRdd.sequences.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/javaAC654791780388976416/testRdd.sequences.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/javaAC654791780388976416/testRdd.sequences.adam/_metadata
/tmp/adamTestMvnp6vi9tr/javaAC654791780388976416/testRdd.sequences.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/javaAC654791780388976416/testRdd.sequences.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1720047956979708341_2.fq
/tmp/adamTestMvnp6vi9tr/TempSuite1720047956979708341_2.fq/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1720047956979708341_2.fq/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite1720047956979708341_2.fq/part-00000
/tmp/adamTestMvnp6vi9tr/TempSuite1720047956979708341_2.fq/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4302732979224702354.bed
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4302732979224702354.bed/.part-00003.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4302732979224702354.bed/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4302732979224702354.bed/_SUCCESS
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4302732979224702354.bed/part-00003
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4302732979224702354.bed/part-00000
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4302732979224702354.bed/part-00002
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4302732979224702354.bed/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4302732979224702354.bed/.part-00002.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4302732979224702354.bed/part-00001
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4302732979224702354.bed/.part-00001.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2687473130682859579.sam
/tmp/adamTestMvnp6vi9tr/TempSuite2687473130682859579.sam/part-r-00000.sam
/tmp/adamTestMvnp6vi9tr/TempSuite2687473130682859579.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2687473130682859579.sam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite2687473130682859579.sam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite2242228359199636517
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite6683185573434484577
/tmp/adamTestMvnp6vi9tr/6787906222806543089
/tmp/adamTestMvnp6vi9tr/6787906222806543089/variants.adam
/tmp/adamTestMvnp6vi9tr/6787906222806543089/variants.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/6787906222806543089/variants.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/6787906222806543089/variants.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/6787906222806543089/variants.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/6787906222806543089/variants.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/6787906222806543089/variants.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/6787906222806543089/variants.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/6787906222806543089/variants.adam/_metadata
/tmp/adamTestMvnp6vi9tr/6787906222806543089/variants.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/6787906222806543089/variants.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/6787906222806543089/variants.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/6787906222806543089/variants.adam/_header
/tmp/adamTestMvnp6vi9tr/3093442900130287327
/tmp/adamTestMvnp6vi9tr/3093442900130287327/.sorted-variants.lex.vcf.crc
/tmp/adamTestMvnp6vi9tr/3093442900130287327/sorted-variants.lex.vcf
/tmp/adamTestMvnp6vi9tr/TempSuite5014427226803669791.adam
/tmp/adamTestMvnp6vi9tr/TempSuite5014427226803669791.adam/part-00001-622c47de-c6e9-4cc5-b270-77d70a39adc6-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite5014427226803669791.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5014427226803669791.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5014427226803669791.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/TempSuite5014427226803669791.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/TempSuite5014427226803669791.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite5014427226803669791.adam/.part-00000-622c47de-c6e9-4cc5-b270-77d70a39adc6-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5014427226803669791.adam/.part-00002-622c47de-c6e9-4cc5-b270-77d70a39adc6-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5014427226803669791.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite5014427226803669791.adam/part-00002-622c47de-c6e9-4cc5-b270-77d70a39adc6-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite5014427226803669791.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5014427226803669791.adam/.part-00001-622c47de-c6e9-4cc5-b270-77d70a39adc6-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5014427226803669791.adam/part-00000-622c47de-c6e9-4cc5-b270-77d70a39adc6-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite5014427226803669791.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/7411133786340606310
/tmp/adamTestMvnp6vi9tr/7411133786340606310/.small.vcf.bgz.crc
/tmp/adamTestMvnp6vi9tr/7411133786340606310/small.vcf.bgz
/tmp/adamTestMvnp6vi9tr/TempSuite351892607846120090
/tmp/adamTestMvnp6vi9tr/javaAC7747633880020563818
/tmp/adamTestMvnp6vi9tr/javaAC7747633880020563818/testRdd.fragment.adam
/tmp/adamTestMvnp6vi9tr/javaAC7747633880020563818/testRdd.fragment.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/javaAC7747633880020563818/testRdd.fragment.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/javaAC7747633880020563818/testRdd.fragment.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/javaAC7747633880020563818/testRdd.fragment.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/javaAC7747633880020563818/testRdd.fragment.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/javaAC7747633880020563818/testRdd.fragment.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/javaAC7747633880020563818/testRdd.fragment.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/javaAC7747633880020563818/testRdd.fragment.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/javaAC7747633880020563818/testRdd.fragment.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/javaAC7747633880020563818/testRdd.fragment.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/javaAC7747633880020563818/testRdd.fragment.adam/_metadata
/tmp/adamTestMvnp6vi9tr/javaAC7747633880020563818/testRdd.fragment.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/javaAC7747633880020563818/testRdd.fragment.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/javaAC7747633880020563818/testRdd.fragment.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/.TempSuite1473408429152128149.sam.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7758646406133109688
/tmp/adamTestMvnp6vi9tr/TempSuite8474578821985665320.adam
/tmp/adamTestMvnp6vi9tr/TempSuite8474578821985665320.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite8474578821985665320.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8474578821985665320.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite8474578821985665320.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite8474578821985665320.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8474578821985665320.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8474578821985665320.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite8474578821985665320.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/TempSuite8474578821985665320.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite8474578821985665320.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8474578821985665320.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8474578821985665320.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7618960274275388769.bed
/tmp/adamTestMvnp6vi9tr/TempSuite8647482247900275421.bed
/tmp/adamTestMvnp6vi9tr/TempSuite8647482247900275421.bed/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8647482247900275421.bed/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite8647482247900275421.bed/part-00000
/tmp/adamTestMvnp6vi9tr/TempSuite8647482247900275421.bed/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/artificial.cram3851089807631605111.cram
/tmp/adamTestMvnp6vi9tr/.SliceDatasetSuite6887769006514107346.fasta.crc
/tmp/adamTestMvnp6vi9tr/TempSuite9032243792813585598
/tmp/adamTestMvnp6vi9tr/TempSuite7798381931374707398.adam
/tmp/adamTestMvnp6vi9tr/TempSuite7798381931374707398.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite7798381931374707398.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7798381931374707398.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7798381931374707398.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/TempSuite7798381931374707398.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite7798381931374707398.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/TempSuite7798381931374707398.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite7798381931374707398.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7798381931374707398.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7798381931374707398.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite7798381931374707398.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite7798381931374707398.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7798381931374707398.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7798381931374707398.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7451188912477433569.adam
/tmp/adamTestMvnp6vi9tr/TempSuite7451188912477433569.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite7451188912477433569.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7451188912477433569.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite7451188912477433569.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite7451188912477433569.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7451188912477433569.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7451188912477433569.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite7451188912477433569.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/TempSuite7451188912477433569.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite7451188912477433569.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7451188912477433569.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7451188912477433569.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7451188912477433569.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7451188912477433569.adam/_header
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7894617895127659756
/tmp/adamTestMvnp6vi9tr/TempSuite3124198357598331105
/tmp/adamTestMvnp6vi9tr/TempSuite774712285022268297
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite8158295730616986867.adam
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite8158295730616986867.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite8158295730616986867.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite8158295730616986867.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite8158295730616986867.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite8158295730616986867.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite8158295730616986867.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite8158295730616986867.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite8158295730616986867.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite8158295730616986867.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite8158295730616986867.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite8158295730616986867.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite8158295730616986867.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite8158295730616986867.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite8158295730616986867.adam/_metadata
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite8158295730616986867.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite8158295730616986867.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite964928815485628827.adam
/tmp/adamTestMvnp6vi9tr/TempSuite964928815485628827.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite964928815485628827.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite964928815485628827.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/TempSuite964928815485628827.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/TempSuite964928815485628827.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite964928815485628827.adam/_partitionedByStartPos
/tmp/adamTestMvnp6vi9tr/TempSuite964928815485628827.adam/referenceName=1
/tmp/adamTestMvnp6vi9tr/TempSuite964928815485628827.adam/referenceName=1/positionBin=26
/tmp/adamTestMvnp6vi9tr/TempSuite964928815485628827.adam/referenceName=1/positionBin=26/part-00000-64b19f38-3b22-4eed-a583-a1d391725ad9.c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite964928815485628827.adam/referenceName=1/positionBin=26/.part-00000-64b19f38-3b22-4eed-a583-a1d391725ad9.c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite964928815485628827.adam/referenceName=1/positionBin=240
/tmp/adamTestMvnp6vi9tr/TempSuite964928815485628827.adam/referenceName=1/positionBin=240/part-00000-64b19f38-3b22-4eed-a583-a1d391725ad9.c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite964928815485628827.adam/referenceName=1/positionBin=240/.part-00000-64b19f38-3b22-4eed-a583-a1d391725ad9.c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite964928815485628827.adam/._partitionedByStartPos.crc
/tmp/adamTestMvnp6vi9tr/TempSuite964928815485628827.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite964928815485628827.adam/referenceName=2
/tmp/adamTestMvnp6vi9tr/TempSuite964928815485628827.adam/referenceName=2/positionBin=189
/tmp/adamTestMvnp6vi9tr/TempSuite964928815485628827.adam/referenceName=2/positionBin=189/part-00000-64b19f38-3b22-4eed-a583-a1d391725ad9.c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite964928815485628827.adam/referenceName=2/positionBin=189/.part-00000-64b19f38-3b22-4eed-a583-a1d391725ad9.c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite964928815485628827.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite964928815485628827.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/small.sam2269229598548340034.sam
/tmp/adamTestMvnp6vi9tr/TempSuite641243964012888430
/tmp/adamTestMvnp6vi9tr/TempSuite499993172396043171.adam
/tmp/adamTestMvnp6vi9tr/TempSuite499993172396043171.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite499993172396043171.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite499993172396043171.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite499993172396043171.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite499993172396043171.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite499993172396043171.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/TempSuite499993172396043171.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite499993172396043171.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/TempSuite499993172396043171.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite499993172396043171.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite499993172396043171.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite499993172396043171.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite499993172396043171.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite499993172396043171.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite499993172396043171.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite499993172396043171.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite499993172396043171.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite499993172396043171.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite499993172396043171.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite499993172396043171.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8100272842653202330.adam
/tmp/adamTestMvnp6vi9tr/TempSuite8100272842653202330.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite8100272842653202330.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8100272842653202330.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8100272842653202330.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/TempSuite8100272842653202330.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite8100272842653202330.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/TempSuite8100272842653202330.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite8100272842653202330.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8100272842653202330.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8100272842653202330.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite8100272842653202330.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite8100272842653202330.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8100272842653202330.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8100272842653202330.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/.FeatureDatasetFunctionsSuite5901687421381842107.interval_list.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6220220784266990685.adam
/tmp/adamTestMvnp6vi9tr/TempSuite6220220784266990685.adam/.part-00000-9a497ed1-1c29-4f27-a09e-082fa0ba8c98-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6220220784266990685.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6220220784266990685.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite6220220784266990685.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite6220220784266990685.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/TempSuite6220220784266990685.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6220220784266990685.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6220220784266990685.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6220220784266990685.adam/part-00000-9a497ed1-1c29-4f27-a09e-082fa0ba8c98-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite6220220784266990685.adam/_header
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite3610758287635436818.fasta
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite3610758287635436818.fasta/.part-00003.crc
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite3610758287635436818.fasta/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite3610758287635436818.fasta/_SUCCESS
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite3610758287635436818.fasta/part-00003
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite3610758287635436818.fasta/part-00000
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite3610758287635436818.fasta/part-00002
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite3610758287635436818.fasta/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite3610758287635436818.fasta/.part-00002.crc
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite3610758287635436818.fasta/part-00001
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite3610758287635436818.fasta/.part-00001.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5183263949056576216.adam
/tmp/adamTestMvnp6vi9tr/TempSuite5183263949056576216.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5183263949056576216.adam/part-00000-14791639-c183-427b-818e-a3b0287fd20f-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite5183263949056576216.adam/.part-00001-14791639-c183-427b-818e-a3b0287fd20f-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5183263949056576216.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite5183263949056576216.adam/.part-00002-14791639-c183-427b-818e-a3b0287fd20f-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5183263949056576216.adam/part-00002-14791639-c183-427b-818e-a3b0287fd20f-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite5183263949056576216.adam/.part-00000-14791639-c183-427b-818e-a3b0287fd20f-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5183263949056576216.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite5183263949056576216.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5183263949056576216.adam/part-00001-14791639-c183-427b-818e-a3b0287fd20f-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite5183263949056576216.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5183263949056576216.adam/_header
/tmp/adamTestMvnp6vi9tr/TempSuite5024198804261861682.sam
/tmp/adamTestMvnp6vi9tr/TempSuite5024198804261861682.sam/part-r-00000.sam
/tmp/adamTestMvnp6vi9tr/TempSuite5024198804261861682.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5024198804261861682.sam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite5024198804261861682.sam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite752029257023952063.bed
/tmp/adamTestMvnp6vi9tr/TempSuite752029257023952063.bed/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/TempSuite752029257023952063.bed/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite752029257023952063.bed/part-00000
/tmp/adamTestMvnp6vi9tr/TempSuite752029257023952063.bed/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite5473229968341215281.bed
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite7384637894457676399.fasta
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite7384637894457676399.fasta/.part-00003.crc
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite7384637894457676399.fasta/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite7384637894457676399.fasta/_SUCCESS
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite7384637894457676399.fasta/part-00003
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite7384637894457676399.fasta/part-00000
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite7384637894457676399.fasta/part-00002
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite7384637894457676399.fasta/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite7384637894457676399.fasta/.part-00002.crc
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite7384637894457676399.fasta/part-00001
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite7384637894457676399.fasta/.part-00001.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8509619397687586071
/tmp/adamTestMvnp6vi9tr/TempSuite5891210723416883306.adam
/tmp/adamTestMvnp6vi9tr/TempSuite5891210723416883306.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite5891210723416883306.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5891210723416883306.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5891210723416883306.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/TempSuite5891210723416883306.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite5891210723416883306.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/TempSuite5891210723416883306.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite5891210723416883306.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5891210723416883306.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5891210723416883306.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite5891210723416883306.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite5891210723416883306.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5891210723416883306.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5891210723416883306.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4351925970568150392
/tmp/adamTestMvnp6vi9tr/TempSuite2037995062959698029
/tmp/adamTestMvnp6vi9tr/TempSuite6152318826849165132.adam
/tmp/adamTestMvnp6vi9tr/TempSuite6152318826849165132.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6152318826849165132.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6152318826849165132.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/TempSuite6152318826849165132.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/TempSuite6152318826849165132.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite6152318826849165132.adam/.part-00000-5e9b0176-c829-4087-91b1-c40e7d7134f3-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6152318826849165132.adam/part-00002-5e9b0176-c829-4087-91b1-c40e7d7134f3-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite6152318826849165132.adam/.part-00001-5e9b0176-c829-4087-91b1-c40e7d7134f3-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6152318826849165132.adam/part-00000-5e9b0176-c829-4087-91b1-c40e7d7134f3-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite6152318826849165132.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite6152318826849165132.adam/.part-00002-5e9b0176-c829-4087-91b1-c40e7d7134f3-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6152318826849165132.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6152318826849165132.adam/part-00001-5e9b0176-c829-4087-91b1-c40e7d7134f3-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite6152318826849165132.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/unordered.sam7577163239449421990.sam
/tmp/adamTestMvnp6vi9tr/TempSuite1787005783170890805
/tmp/adamTestMvnp6vi9tr/TempSuite7337224627714644659.fq
/tmp/adamTestMvnp6vi9tr/TempSuite7337224627714644659.fq/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7337224627714644659.fq/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite7337224627714644659.fq/part-00000
/tmp/adamTestMvnp6vi9tr/TempSuite7337224627714644659.fq/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1336533418708661635.bed
/tmp/adamTestMvnp6vi9tr/TempSuite1336533418708661635.bed/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1336533418708661635.bed/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite1336533418708661635.bed/part-00000
/tmp/adamTestMvnp6vi9tr/TempSuite1336533418708661635.bed/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2112061012120250873
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite310029648828464068.fasta
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite310029648828464068.fasta/.part-00003.crc
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite310029648828464068.fasta/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite310029648828464068.fasta/_SUCCESS
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite310029648828464068.fasta/part-00003
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite310029648828464068.fasta/part-00000
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite310029648828464068.fasta/part-00002
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite310029648828464068.fasta/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite310029648828464068.fasta/.part-00002.crc
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite310029648828464068.fasta/part-00001
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite310029648828464068.fasta/.part-00001.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3361593851421970326
/tmp/adamTestMvnp6vi9tr/TempSuite2145503752752408325
/tmp/adamTestMvnp6vi9tr/TempSuite7288154359875631629.adam
/tmp/adamTestMvnp6vi9tr/TempSuite7288154359875631629.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7288154359875631629.adam/.part-00001-46855ff4-328f-4488-bd82-3346d18ed0c0-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7288154359875631629.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite7288154359875631629.adam/part-00001-46855ff4-328f-4488-bd82-3346d18ed0c0-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite7288154359875631629.adam/part-00000-46855ff4-328f-4488-bd82-3346d18ed0c0-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite7288154359875631629.adam/.part-00002-46855ff4-328f-4488-bd82-3346d18ed0c0-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7288154359875631629.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite7288154359875631629.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7288154359875631629.adam/.part-00000-46855ff4-328f-4488-bd82-3346d18ed0c0-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7288154359875631629.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7288154359875631629.adam/_header
/tmp/adamTestMvnp6vi9tr/TempSuite7288154359875631629.adam/part-00002-46855ff4-328f-4488-bd82-3346d18ed0c0-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite9153458207480374855.adam
/tmp/adamTestMvnp6vi9tr/TempSuite9153458207480374855.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite9153458207480374855.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite9153458207480374855.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/TempSuite9153458207480374855.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/TempSuite9153458207480374855.adam/.part-00000-c2f732d7-8362-4ea6-ac36-df277bbde342-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite9153458207480374855.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite9153458207480374855.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite9153458207480374855.adam/part-00000-c2f732d7-8362-4ea6-ac36-df277bbde342-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite9153458207480374855.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite9153458207480374855.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4929009978619916003
/tmp/adamTestMvnp6vi9tr/TempSuite35740327428379901
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite3872540899449370567.interval_list
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite3872540899449370567.interval_list/.part-00003.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite3872540899449370567.interval_list/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite3872540899449370567.interval_list/_SUCCESS
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite3872540899449370567.interval_list/part-00003
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite3872540899449370567.interval_list/part-00000
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite3872540899449370567.interval_list/part-00002
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite3872540899449370567.interval_list/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite3872540899449370567.interval_list/.part-00002.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite3872540899449370567.interval_list/part-00001
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite3872540899449370567.interval_list/.part-00001.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2145503752752408325.fa
/tmp/adamTestMvnp6vi9tr/TempSuite2145503752752408325.fa/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2145503752752408325.fa/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite2145503752752408325.fa/part-00000
/tmp/adamTestMvnp6vi9tr/TempSuite2145503752752408325.fa/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5634477717183221744
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite5340552365773206384.gtf
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite5340552365773206384.gtf/.part-00003.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite5340552365773206384.gtf/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite5340552365773206384.gtf/_SUCCESS
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite5340552365773206384.gtf/part-00003
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite5340552365773206384.gtf/part-00000
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite5340552365773206384.gtf/part-00002
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite5340552365773206384.gtf/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite5340552365773206384.gtf/.part-00002.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite5340552365773206384.gtf/part-00001
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite5340552365773206384.gtf/.part-00001.crc
/tmp/adamTestMvnp6vi9tr/TempSuite184676115806135977
/tmp/adamTestMvnp6vi9tr/TempSuite7000344628728082232
/tmp/adamTestMvnp6vi9tr/TempSuite965324066733677382
/tmp/adamTestMvnp6vi9tr/TempSuite5215830893314511283
/tmp/adamTestMvnp6vi9tr/TempSuite5686264315205883881.adam
/tmp/adamTestMvnp6vi9tr/TempSuite5686264315205883881.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5686264315205883881.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite5686264315205883881.adam/.part-00000-571fb0cb-8d73-4cae-b577-e0ef4c57d2e2-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5686264315205883881.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite5686264315205883881.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5686264315205883881.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5686264315205883881.adam/_header
/tmp/adamTestMvnp6vi9tr/TempSuite5686264315205883881.adam/part-00000-571fb0cb-8d73-4cae-b577-e0ef4c57d2e2-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite351892607846120090.adam
/tmp/adamTestMvnp6vi9tr/TempSuite351892607846120090.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite351892607846120090.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite351892607846120090.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite351892607846120090.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite351892607846120090.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite351892607846120090.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite351892607846120090.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite351892607846120090.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite351892607846120090.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite351892607846120090.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite351892607846120090.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite351892607846120090.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite351892607846120090.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite351892607846120090.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite351892607846120090.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite351892607846120090.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7007226927716355745.adam
/tmp/adamTestMvnp6vi9tr/TempSuite7007226927716355745.adam/part-00000-f9b269d2-4e66-4cf7-b88d-3add7743ca43-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite7007226927716355745.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7007226927716355745.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7007226927716355745.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/TempSuite7007226927716355745.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/TempSuite7007226927716355745.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite7007226927716355745.adam/.part-00000-f9b269d2-4e66-4cf7-b88d-3add7743ca43-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7007226927716355745.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite7007226927716355745.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7007226927716355745.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite1004493889874243471
/tmp/adamTestMvnp6vi9tr/TempSuite5690701195767138506.sam
/tmp/adamTestMvnp6vi9tr/reads124943910170738705510
/tmp/adamTestMvnp6vi9tr/reads124943910170738705510/reads12.sam
/tmp/adamTestMvnp6vi9tr/reads124943910170738705510/reads12.sam/part-r-00000.sam
/tmp/adamTestMvnp6vi9tr/reads124943910170738705510/reads12.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnp6vi9tr/reads124943910170738705510/reads12.sam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/reads124943910170738705510/reads12.sam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3289717497644568664.bed
/tmp/adamTestMvnp6vi9tr/TempSuite3289717497644568664.bed/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3289717497644568664.bed/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite3289717497644568664.bed/part-00000
/tmp/adamTestMvnp6vi9tr/TempSuite3289717497644568664.bed/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5350278570848410593.adam
/tmp/adamTestMvnp6vi9tr/TempSuite5350278570848410593.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite5350278570848410593.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5350278570848410593.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite5350278570848410593.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite5350278570848410593.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5350278570848410593.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5350278570848410593.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite5350278570848410593.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite5350278570848410593.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5350278570848410593.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1401130267944201014.fq
/tmp/adamTestMvnp6vi9tr/TempSuite1401130267944201014.fq/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1401130267944201014.fq/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite1401130267944201014.fq/part-00000
/tmp/adamTestMvnp6vi9tr/TempSuite1401130267944201014.fq/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite1869130559962266078
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite8344849461554449775
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite4045879464584384003.fasta
/tmp/adamTestMvnp6vi9tr/bqsr1.sam3279147941154014699.sam
/tmp/adamTestMvnp6vi9tr/unordered.sam7691485726788385931.sam
/tmp/adamTestMvnp6vi9tr/TempSuite512994662873630460
/tmp/adamTestMvnp6vi9tr/TempSuite3817540143766699207
/tmp/adamTestMvnp6vi9tr/TempSuite2326014299766758681
/tmp/adamTestMvnp6vi9tr/TempSuite4151310816179340561
/tmp/adamTestMvnp6vi9tr/6529068885522082505
/tmp/adamTestMvnp6vi9tr/6529068885522082505/.readname_sorted.sam.crc
/tmp/adamTestMvnp6vi9tr/6529068885522082505/readname_sorted.sam
/tmp/adamTestMvnp6vi9tr/4142253531664141964
/tmp/adamTestMvnp6vi9tr/4142253531664141964/ordered.sam
/tmp/adamTestMvnp6vi9tr/4142253531664141964/.ordered.sam.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4460756065036150717
/tmp/adamTestMvnp6vi9tr/TempSuite781168865712112319
/tmp/adamTestMvnp6vi9tr/TempSuite7007226927716355745
/tmp/adamTestMvnp6vi9tr/TempSuite4335385040091154255.adam
/tmp/adamTestMvnp6vi9tr/TempSuite4335385040091154255.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite4335385040091154255.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite4335385040091154255.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4335385040091154255.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4335385040091154255.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite4335385040091154255.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite4335385040091154255.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4335385040091154255.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite4335385040091154255.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4335385040091154255.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite4335385040091154255.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4335385040091154255.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite4335385040091154255.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/TempSuite4335385040091154255.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4335385040091154255.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite4335385040091154255.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4335385040091154255.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4335385040091154255.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4335385040091154255.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4335385040091154255.adam/_header
/tmp/adamTestMvnp6vi9tr/TempSuite5282918718639245716.bed
/tmp/adamTestMvnp6vi9tr/TempSuite5282918718639245716.bed/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5282918718639245716.bed/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite5282918718639245716.bed/part-00000
/tmp/adamTestMvnp6vi9tr/TempSuite5282918718639245716.bed/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/ReadDatasetSuite8976570640228936400
/tmp/adamTestMvnp6vi9tr/TempSuite9209356779244870504.adam
/tmp/adamTestMvnp6vi9tr/TempSuite9209356779244870504.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite9209356779244870504.adam/part-00000-c755a997-a4aa-4b0d-b724-63e063de0015-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite9209356779244870504.adam/.part-00000-c755a997-a4aa-4b0d-b724-63e063de0015-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite9209356779244870504.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite9209356779244870504.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite9209356779244870504.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/TempSuite9209356779244870504.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite9209356779244870504.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite9209356779244870504.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite9209356779244870504.adam/_header
/tmp/adamTestMvnp6vi9tr/.TempSuite7168713476675100321.fq.crc
/tmp/adamTestMvnp6vi9tr/javaAC6388390457984695868
/tmp/adamTestMvnp6vi9tr/javaAC6388390457984695868/testRdd.sequences.adam
/tmp/adamTestMvnp6vi9tr/javaAC6388390457984695868/testRdd.sequences.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/javaAC6388390457984695868/testRdd.sequences.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/javaAC6388390457984695868/testRdd.sequences.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/javaAC6388390457984695868/testRdd.sequences.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/javaAC6388390457984695868/testRdd.sequences.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/javaAC6388390457984695868/testRdd.sequences.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/javaAC6388390457984695868/testRdd.sequences.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/javaAC6388390457984695868/testRdd.sequences.adam/_metadata
/tmp/adamTestMvnp6vi9tr/javaAC6388390457984695868/testRdd.sequences.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/javaAC6388390457984695868/testRdd.sequences.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7851587388838864645
/tmp/adamTestMvnp6vi9tr/TempSuite7970852887489104908
/tmp/adamTestMvnp6vi9tr/TempSuite3259113058597057441.adam
/tmp/adamTestMvnp6vi9tr/TempSuite3259113058597057441.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite3259113058597057441.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3259113058597057441.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3259113058597057441.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/TempSuite3259113058597057441.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite3259113058597057441.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/TempSuite3259113058597057441.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite3259113058597057441.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3259113058597057441.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3259113058597057441.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite3259113058597057441.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite3259113058597057441.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3259113058597057441.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3259113058597057441.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite8633910103587836114
/tmp/adamTestMvnp6vi9tr/reads126870684876863217665
/tmp/adamTestMvnp6vi9tr/reads126870684876863217665/reads12.fq
/tmp/adamTestMvnp6vi9tr/reads126870684876863217665/reads12.fq/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/reads126870684876863217665/reads12.fq/_SUCCESS
/tmp/adamTestMvnp6vi9tr/reads126870684876863217665/reads12.fq/part-00000
/tmp/adamTestMvnp6vi9tr/reads126870684876863217665/reads12.fq/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5282918718639245716
/tmp/adamTestMvnp6vi9tr/javaAC9009385840757880960
/tmp/adamTestMvnp6vi9tr/javaAC9009385840757880960/testRdd.slices.adam
/tmp/adamTestMvnp6vi9tr/javaAC9009385840757880960/testRdd.slices.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/javaAC9009385840757880960/testRdd.slices.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/javaAC9009385840757880960/testRdd.slices.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/javaAC9009385840757880960/testRdd.slices.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/javaAC9009385840757880960/testRdd.slices.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/javaAC9009385840757880960/testRdd.slices.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/javaAC9009385840757880960/testRdd.slices.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/javaAC9009385840757880960/testRdd.slices.adam/_metadata
/tmp/adamTestMvnp6vi9tr/javaAC9009385840757880960/testRdd.slices.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/javaAC9009385840757880960/testRdd.slices.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8509619397687586071.bed
/tmp/adamTestMvnp6vi9tr/TempSuite8509619397687586071.bed/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8509619397687586071.bed/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite8509619397687586071.bed/part-00000
/tmp/adamTestMvnp6vi9tr/TempSuite8509619397687586071.bed/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5690701195767138506
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite4400416068001007653
/tmp/adamTestMvnp6vi9tr/TempSuite7270867838868999367
/tmp/adamTestMvnp6vi9tr/TempSuite1186212526344639482.adam
/tmp/adamTestMvnp6vi9tr/TempSuite1186212526344639482.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite1186212526344639482.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1186212526344639482.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite1186212526344639482.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite1186212526344639482.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1186212526344639482.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1186212526344639482.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite1186212526344639482.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite1186212526344639482.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1186212526344639482.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1186212526344639482.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1186212526344639482.adam/_header
/tmp/adamTestMvnp6vi9tr/TempSuite5874047013905513002
/tmp/adamTestMvnp6vi9tr/5665347755358998909
/tmp/adamTestMvnp6vi9tr/5665347755358998909/binned.adam
/tmp/adamTestMvnp6vi9tr/5665347755358998909/binned.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/5665347755358998909/binned.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/5665347755358998909/binned.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/5665347755358998909/binned.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/5665347755358998909/binned.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/5665347755358998909/binned.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/5665347755358998909/binned.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/5665347755358998909/binned.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/5665347755358998909/binned.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/5665347755358998909/binned.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/5665347755358998909/binned.adam/_metadata
/tmp/adamTestMvnp6vi9tr/5665347755358998909/binned.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/5665347755358998909/binned.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/5665347755358998909/binned.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8474578821985665320
/tmp/adamTestMvnp6vi9tr/TempSuite6058914515220699462.adam
/tmp/adamTestMvnp6vi9tr/TempSuite6058914515220699462.adam/.part-00003-2367c5b1-7235-4d27-9f25-11c9df60f4ae-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6058914515220699462.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6058914515220699462.adam/.part-00000-2367c5b1-7235-4d27-9f25-11c9df60f4ae-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6058914515220699462.adam/part-00003-2367c5b1-7235-4d27-9f25-11c9df60f4ae-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite6058914515220699462.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite6058914515220699462.adam/part-00000-2367c5b1-7235-4d27-9f25-11c9df60f4ae-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite6058914515220699462.adam/part-00005-2367c5b1-7235-4d27-9f25-11c9df60f4ae-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite6058914515220699462.adam/.part-00005-2367c5b1-7235-4d27-9f25-11c9df60f4ae-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6058914515220699462.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite6058914515220699462.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/TempSuite6058914515220699462.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6058914515220699462.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3052112768913181674.adam
/tmp/adamTestMvnp6vi9tr/TempSuite3052112768913181674.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3052112768913181674.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3052112768913181674.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/TempSuite3052112768913181674.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/TempSuite3052112768913181674.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite3052112768913181674.adam/.part-00000-1b846e34-81b5-4a65-8dac-0aa3a4e14b6c-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3052112768913181674.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite3052112768913181674.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3052112768913181674.adam/part-00000-1b846e34-81b5-4a65-8dac-0aa3a4e14b6c-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite3052112768913181674.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2079271288829021591.adam
/tmp/adamTestMvnp6vi9tr/TempSuite2079271288829021591.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite2079271288829021591.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite2079271288829021591.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2079271288829021591.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2079271288829021591.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite2079271288829021591.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite2079271288829021591.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2079271288829021591.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite2079271288829021591.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2079271288829021591.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite2079271288829021591.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2079271288829021591.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite2079271288829021591.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/TempSuite2079271288829021591.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2079271288829021591.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite2079271288829021591.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2079271288829021591.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2079271288829021591.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite850201206975446534.adam
/tmp/adamTestMvnp6vi9tr/TempSuite850201206975446534.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite850201206975446534.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite850201206975446534.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite850201206975446534.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite850201206975446534.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite850201206975446534.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite850201206975446534.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite850201206975446534.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite850201206975446534.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite850201206975446534.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite850201206975446534.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite850201206975446534.adam/_header
/tmp/adamTestMvnp6vi9tr/trinity.fa5419151029918128018.fa
/tmp/adamTestMvnp6vi9tr/TempSuite3575115252480006272.bed
/tmp/adamTestMvnp6vi9tr/TempSuite3575115252480006272.bed/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3575115252480006272.bed/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite3575115252480006272.bed/part-00000
/tmp/adamTestMvnp6vi9tr/TempSuite3575115252480006272.bed/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite822909633722509136.bed
/tmp/adamTestMvnp6vi9tr/TempSuite822909633722509136.bed/.part-00003.crc
/tmp/adamTestMvnp6vi9tr/TempSuite822909633722509136.bed/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/TempSuite822909633722509136.bed/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite822909633722509136.bed/part-00003
/tmp/adamTestMvnp6vi9tr/TempSuite822909633722509136.bed/part-00000
/tmp/adamTestMvnp6vi9tr/TempSuite822909633722509136.bed/part-00002
/tmp/adamTestMvnp6vi9tr/TempSuite822909633722509136.bed/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite822909633722509136.bed/.part-00002.crc
/tmp/adamTestMvnp6vi9tr/TempSuite822909633722509136.bed/part-00001
/tmp/adamTestMvnp6vi9tr/TempSuite822909633722509136.bed/.part-00001.crc
/tmp/adamTestMvnp6vi9tr/unordered.sam1374098610071857630.sam
/tmp/adamTestMvnp6vi9tr/TempSuite3709380385291783437
/tmp/adamTestMvnp6vi9tr/TempSuite641788351767608269
/tmp/adamTestMvnp6vi9tr/adam-cli.TransformFeaturesSuite5441782412310929781.adam
/tmp/adamTestMvnp6vi9tr/adam-cli.TransformFeaturesSuite5441782412310929781.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/adam-cli.TransformFeaturesSuite5441782412310929781.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/adam-cli.TransformFeaturesSuite5441782412310929781.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/adam-cli.TransformFeaturesSuite5441782412310929781.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/adam-cli.TransformFeaturesSuite5441782412310929781.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/adam-cli.TransformFeaturesSuite5441782412310929781.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/adam-cli.TransformFeaturesSuite5441782412310929781.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/adam-cli.TransformFeaturesSuite5441782412310929781.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/adam-cli.TransformFeaturesSuite5441782412310929781.adam/_metadata
/tmp/adamTestMvnp6vi9tr/adam-cli.TransformFeaturesSuite5441782412310929781.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/adam-cli.TransformFeaturesSuite5441782412310929781.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/adam-cli.TransformFeaturesSuite5441782412310929781.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7829943330658965155
/tmp/adamTestMvnp6vi9tr/TempSuite3785532726340821469.2.adam
/tmp/adamTestMvnp6vi9tr/TempSuite3785532726340821469.2.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite3785532726340821469.2.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3785532726340821469.2.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3785532726340821469.2.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/TempSuite3785532726340821469.2.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite3785532726340821469.2.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/TempSuite3785532726340821469.2.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite3785532726340821469.2.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3785532726340821469.2.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3785532726340821469.2.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite3785532726340821469.2.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite3785532726340821469.2.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3785532726340821469.2.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3785532726340821469.2.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5526804026136792703.adam
/tmp/adamTestMvnp6vi9tr/TempSuite5526804026136792703.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5526804026136792703.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite5526804026136792703.adam/_partitionedByStartPos
/tmp/adamTestMvnp6vi9tr/TempSuite5526804026136792703.adam/referenceName=1
/tmp/adamTestMvnp6vi9tr/TempSuite5526804026136792703.adam/referenceName=1/positionBin=0
/tmp/adamTestMvnp6vi9tr/TempSuite5526804026136792703.adam/referenceName=1/positionBin=0/part-00000-b5b39153-d42d-4080-9439-c79fc724f338.c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite5526804026136792703.adam/referenceName=1/positionBin=0/.part-00000-b5b39153-d42d-4080-9439-c79fc724f338.c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5526804026136792703.adam/referenceName=1/positionBin=169
/tmp/adamTestMvnp6vi9tr/TempSuite5526804026136792703.adam/referenceName=1/positionBin=169/.part-00001-b5b39153-d42d-4080-9439-c79fc724f338.c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5526804026136792703.adam/referenceName=1/positionBin=169/part-00001-b5b39153-d42d-4080-9439-c79fc724f338.c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite5526804026136792703.adam/referenceName=1/positionBin=14
/tmp/adamTestMvnp6vi9tr/TempSuite5526804026136792703.adam/referenceName=1/positionBin=14/part-00000-b5b39153-d42d-4080-9439-c79fc724f338.c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite5526804026136792703.adam/referenceName=1/positionBin=14/.part-00000-b5b39153-d42d-4080-9439-c79fc724f338.c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5526804026136792703.adam/referenceName=1/positionBin=240
/tmp/adamTestMvnp6vi9tr/TempSuite5526804026136792703.adam/referenceName=1/positionBin=240/.part-00002-b5b39153-d42d-4080-9439-c79fc724f338.c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5526804026136792703.adam/referenceName=1/positionBin=240/part-00002-b5b39153-d42d-4080-9439-c79fc724f338.c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite5526804026136792703.adam/._partitionedByStartPos.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5526804026136792703.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite5526804026136792703.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/TempSuite5526804026136792703.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5526804026136792703.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite912697082425675855.bam
/tmp/adamTestMvnp6vi9tr/TempSuite912697082425675855.bam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite912697082425675855.bam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite912697082425675855.bam/.part-r-00000.bam.crc
/tmp/adamTestMvnp6vi9tr/TempSuite912697082425675855.bam/part-r-00000.bam
/tmp/adamTestMvnp6vi9tr/TempSuite752029257023952063
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite784137544223458321.gff3
/tmp/adamTestMvnp6vi9tr/TempSuite6858897036586784852.adam
/tmp/adamTestMvnp6vi9tr/TempSuite6858897036586784852.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite6858897036586784852.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6858897036586784852.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite6858897036586784852.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite6858897036586784852.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6858897036586784852.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6858897036586784852.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite6858897036586784852.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite6858897036586784852.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6858897036586784852.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite35740327428379901.fq
/tmp/adamTestMvnp6vi9tr/TempSuite35740327428379901.fq/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/TempSuite35740327428379901.fq/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite35740327428379901.fq/part-00000
/tmp/adamTestMvnp6vi9tr/TempSuite35740327428379901.fq/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7519867829022627529
/tmp/adamTestMvnp6vi9tr/TempSuite7000344628728082232.adam
/tmp/adamTestMvnp6vi9tr/TempSuite7000344628728082232.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite7000344628728082232.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7000344628728082232.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite7000344628728082232.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite7000344628728082232.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7000344628728082232.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7000344628728082232.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite7000344628728082232.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite7000344628728082232.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7000344628728082232.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7000344628728082232.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7000344628728082232.adam/_header
/tmp/adamTestMvnp6vi9tr/random.vcf1128712443927629832.vcf
/tmp/adamTestMvnp6vi9tr/TempSuite1494242986863000758.adam
/tmp/adamTestMvnp6vi9tr/TempSuite1494242986863000758.adam/part-00000-8248a19d-6ecb-4b37-a808-73f8e890235c-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite1494242986863000758.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1494242986863000758.adam/.part-00002-8248a19d-6ecb-4b37-a808-73f8e890235c-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1494242986863000758.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite1494242986863000758.adam/.part-00000-8248a19d-6ecb-4b37-a808-73f8e890235c-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1494242986863000758.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite1494242986863000758.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/TempSuite1494242986863000758.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1494242986863000758.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1494242986863000758.adam/part-00002-8248a19d-6ecb-4b37-a808-73f8e890235c-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite1494242986863000758.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1494242986863000758.adam/_header
/tmp/adamTestMvnp6vi9tr/TempSuite1494242986863000758.adam/.part-00001-8248a19d-6ecb-4b37-a808-73f8e890235c-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite1494242986863000758.adam/part-00001-8248a19d-6ecb-4b37-a808-73f8e890235c-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite3719271194033762452
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7200817046384854729.gff3
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7200817046384854729.gff3/.part-00003.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7200817046384854729.gff3/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7200817046384854729.gff3/_SUCCESS
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7200817046384854729.gff3/part-00003
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7200817046384854729.gff3/part-00000
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7200817046384854729.gff3/part-00002
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7200817046384854729.gff3/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7200817046384854729.gff3/.part-00002.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7200817046384854729.gff3/part-00001
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7200817046384854729.gff3/.part-00001.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4643879697775620968.adam
/tmp/adamTestMvnp6vi9tr/TempSuite4643879697775620968.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite4643879697775620968.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4643879697775620968.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4643879697775620968.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/TempSuite4643879697775620968.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite4643879697775620968.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/TempSuite4643879697775620968.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite4643879697775620968.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4643879697775620968.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4643879697775620968.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite4643879697775620968.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite4643879697775620968.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4643879697775620968.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4643879697775620968.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite983521086394517231.gff3
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite983521086394517231.gff3/.part-00003.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite983521086394517231.gff3/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite983521086394517231.gff3/_SUCCESS
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite983521086394517231.gff3/part-00003
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite983521086394517231.gff3/part-00000
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite983521086394517231.gff3/part-00002
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite983521086394517231.gff3/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite983521086394517231.gff3/.part-00002.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite983521086394517231.gff3/part-00001
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite983521086394517231.gff3/.part-00001.crc
/tmp/adamTestMvnp6vi9tr/TempSuite898410229662454241_2.fq
/tmp/adamTestMvnp6vi9tr/TempSuite898410229662454241_2.fq/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/TempSuite898410229662454241_2.fq/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite898410229662454241_2.fq/part-00000
/tmp/adamTestMvnp6vi9tr/TempSuite898410229662454241_2.fq/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/javaAC6316241368163166520
/tmp/adamTestMvnp6vi9tr/javaAC6316241368163166520/testRdd.variant.adam
/tmp/adamTestMvnp6vi9tr/javaAC6316241368163166520/testRdd.variant.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/javaAC6316241368163166520/testRdd.variant.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/javaAC6316241368163166520/testRdd.variant.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/javaAC6316241368163166520/testRdd.variant.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/javaAC6316241368163166520/testRdd.variant.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/javaAC6316241368163166520/testRdd.variant.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/javaAC6316241368163166520/testRdd.variant.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/javaAC6316241368163166520/testRdd.variant.adam/_metadata
/tmp/adamTestMvnp6vi9tr/javaAC6316241368163166520/testRdd.variant.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/javaAC6316241368163166520/testRdd.variant.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/javaAC6316241368163166520/testRdd.variant.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/javaAC6316241368163166520/testRdd.variant.adam/_header
/tmp/adamTestMvnp6vi9tr/TempSuite9154521785634134918.adam
/tmp/adamTestMvnp6vi9tr/TempSuite9154521785634134918.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite9154521785634134918.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite9154521785634134918.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite9154521785634134918.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite9154521785634134918.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite9154521785634134918.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite9154521785634134918.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite9154521785634134918.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite9154521785634134918.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite9154521785634134918.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite9154521785634134918.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite9154521785634134918.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite9154521785634134918.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/TempSuite9154521785634134918.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite9154521785634134918.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite9154521785634134918.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite9154521785634134918.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite9154521785634134918.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite9122049473205354091.adam
/tmp/adamTestMvnp6vi9tr/TempSuite9122049473205354091.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite9122049473205354091.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite9122049473205354091.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite9122049473205354091.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/TempSuite9122049473205354091.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite9122049473205354091.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/TempSuite9122049473205354091.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite9122049473205354091.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite9122049473205354091.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite9122049473205354091.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite9122049473205354091.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite9122049473205354091.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite9122049473205354091.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite9122049473205354091.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite971042307642165320
/tmp/adamTestMvnp6vi9tr/TempSuite5874047013905513002.adam
/tmp/adamTestMvnp6vi9tr/TempSuite5874047013905513002.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5874047013905513002.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite5874047013905513002.adam/_partitionedByStartPos
/tmp/adamTestMvnp6vi9tr/TempSuite5874047013905513002.adam/referenceName=13
/tmp/adamTestMvnp6vi9tr/TempSuite5874047013905513002.adam/referenceName=13/positionBin=0
/tmp/adamTestMvnp6vi9tr/TempSuite5874047013905513002.adam/referenceName=13/positionBin=0/part-00000-03191045-c802-4ce1-9c08-2f1b2835a85b.c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite5874047013905513002.adam/referenceName=13/positionBin=0/.part-00000-03191045-c802-4ce1-9c08-2f1b2835a85b.c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5874047013905513002.adam/referenceName=1
/tmp/adamTestMvnp6vi9tr/TempSuite5874047013905513002.adam/referenceName=1/positionBin=0
/tmp/adamTestMvnp6vi9tr/TempSuite5874047013905513002.adam/referenceName=1/positionBin=0/part-00000-03191045-c802-4ce1-9c08-2f1b2835a85b.c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite5874047013905513002.adam/referenceName=1/positionBin=0/.part-00000-03191045-c802-4ce1-9c08-2f1b2835a85b.c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5874047013905513002.adam/._partitionedByStartPos.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5874047013905513002.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite5874047013905513002.adam/referenceName=2
/tmp/adamTestMvnp6vi9tr/TempSuite5874047013905513002.adam/referenceName=2/positionBin=0
/tmp/adamTestMvnp6vi9tr/TempSuite5874047013905513002.adam/referenceName=2/positionBin=0/part-00000-03191045-c802-4ce1-9c08-2f1b2835a85b.c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite5874047013905513002.adam/referenceName=2/positionBin=0/.part-00000-03191045-c802-4ce1-9c08-2f1b2835a85b.c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5874047013905513002.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5874047013905513002.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite5874047013905513002.adam/_header
/tmp/adamTestMvnp6vi9tr/TempSuite3747803612395711091
/tmp/adamTestMvnp6vi9tr/TempSuite5783277284735372964.bam
/tmp/adamTestMvnp6vi9tr/TempSuite6445734756453148664
/tmp/adamTestMvnp6vi9tr/6710166692010922928
/tmp/adamTestMvnp6vi9tr/6710166692010922928/predicate.2.adam
/tmp/adamTestMvnp6vi9tr/6710166692010922928/predicate.2.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/6710166692010922928/predicate.2.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/6710166692010922928/predicate.2.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/6710166692010922928/predicate.2.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/6710166692010922928/predicate.2.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/6710166692010922928/predicate.2.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/6710166692010922928/predicate.2.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/6710166692010922928/predicate.2.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/6710166692010922928/predicate.2.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/6710166692010922928/predicate.2.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/6710166692010922928/predicate.2.adam/_metadata
/tmp/adamTestMvnp6vi9tr/6710166692010922928/predicate.2.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/6710166692010922928/predicate.2.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/6710166692010922928/predicate.2.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite1465760477942538027
/tmp/adamTestMvnp6vi9tr/TempSuite557956213877608680.bed
/tmp/adamTestMvnp6vi9tr/TempSuite557956213877608680.bed/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/TempSuite557956213877608680.bed/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite557956213877608680.bed/part-00000
/tmp/adamTestMvnp6vi9tr/TempSuite557956213877608680.bed/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite161439522051811601
/tmp/adamTestMvnp6vi9tr/TempSuite2502912643671208316.adam
/tmp/adamTestMvnp6vi9tr/TempSuite2502912643671208316.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite2502912643671208316.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2502912643671208316.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite2502912643671208316.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite2502912643671208316.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2502912643671208316.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2502912643671208316.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite2502912643671208316.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite2502912643671208316.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2502912643671208316.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2502912643671208316.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite2502912643671208316.adam/_header
/tmp/adamTestMvnp6vi9tr/TempSuite4747885754508939441
/tmp/adamTestMvnp6vi9tr/TempSuite893395122686612643
/tmp/adamTestMvnp6vi9tr/TempSuite4532647212046991121.adam
/tmp/adamTestMvnp6vi9tr/TempSuite4532647212046991121.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite4532647212046991121.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite4532647212046991121.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4532647212046991121.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4532647212046991121.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite4532647212046991121.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite4532647212046991121.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4532647212046991121.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite4532647212046991121.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4532647212046991121.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite4532647212046991121.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4532647212046991121.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite4532647212046991121.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/TempSuite4532647212046991121.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4532647212046991121.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite4532647212046991121.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4532647212046991121.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite4532647212046991121.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite6709517153239300130.gtf
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite6709517153239300130.gtf/.part-00003.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite6709517153239300130.gtf/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite6709517153239300130.gtf/_SUCCESS
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite6709517153239300130.gtf/part-00003
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite6709517153239300130.gtf/part-00000
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite6709517153239300130.gtf/part-00002
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite6709517153239300130.gtf/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite6709517153239300130.gtf/.part-00002.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite6709517153239300130.gtf/part-00001
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite6709517153239300130.gtf/.part-00001.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8513564981779312578.adam
/tmp/adamTestMvnp6vi9tr/TempSuite8513564981779312578.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite8513564981779312578.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8513564981779312578.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite8513564981779312578.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite8513564981779312578.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8513564981779312578.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8513564981779312578.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite8513564981779312578.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite8513564981779312578.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8513564981779312578.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8513564981779312578.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8513564981779312578.adam/_header
/tmp/adamTestMvnp6vi9tr/367930694692319292
/tmp/adamTestMvnp6vi9tr/367930694692319292/variants.lex.adam
/tmp/adamTestMvnp6vi9tr/367930694692319292/variants.lex.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/367930694692319292/variants.lex.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/367930694692319292/variants.lex.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/367930694692319292/variants.lex.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/367930694692319292/variants.lex.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/367930694692319292/variants.lex.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/367930694692319292/variants.lex.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/367930694692319292/variants.lex.adam/_metadata
/tmp/adamTestMvnp6vi9tr/367930694692319292/variants.lex.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/367930694692319292/variants.lex.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/367930694692319292/variants.lex.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/367930694692319292/variants.lex.adam/_header
/tmp/adamTestMvnp6vi9tr/TempSuite6239013708510882465.adam
/tmp/adamTestMvnp6vi9tr/TempSuite6239013708510882465.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite6239013708510882465.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6239013708510882465.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite6239013708510882465.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite6239013708510882465.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6239013708510882465.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6239013708510882465.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite6239013708510882465.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite6239013708510882465.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6239013708510882465.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6239013708510882465.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6239013708510882465.adam/_header
/tmp/adamTestMvnp6vi9tr/TempSuite8413355849023256214
/tmp/adamTestMvnp6vi9tr/TempSuite8812964990535757643.adam
/tmp/adamTestMvnp6vi9tr/TempSuite8812964990535757643.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite8812964990535757643.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite8812964990535757643.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8812964990535757643.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8812964990535757643.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite8812964990535757643.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite8812964990535757643.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8812964990535757643.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite8812964990535757643.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8812964990535757643.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite8812964990535757643.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8812964990535757643.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite8812964990535757643.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/TempSuite8812964990535757643.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8812964990535757643.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite8812964990535757643.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8812964990535757643.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8812964990535757643.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3344956849657016726.adam
/tmp/adamTestMvnp6vi9tr/TempSuite3344956849657016726.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3344956849657016726.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite3344956849657016726.adam/part-00000-c2b9a50b-a1cb-4899-af4a-147233428cda-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite3344956849657016726.adam/.part-00000-c2b9a50b-a1cb-4899-af4a-147233428cda-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3344956849657016726.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite3344956849657016726.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3344956849657016726.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite3344956849657016726.adam/_header
/tmp/adamTestMvnp6vi9tr/TempSuite6993903272280183737.adam
/tmp/adamTestMvnp6vi9tr/TempSuite6993903272280183737.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6993903272280183737.adam/._processingSteps.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6993903272280183737.adam/_readGroups.avro
/tmp/adamTestMvnp6vi9tr/TempSuite6993903272280183737.adam/_processingSteps.avro
/tmp/adamTestMvnp6vi9tr/TempSuite6993903272280183737.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite6993903272280183737.adam/part-00001-35f3d3c4-a931-4a10-922c-875f15ca5ee8-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite6993903272280183737.adam/part-00002-35f3d3c4-a931-4a10-922c-875f15ca5ee8-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite6993903272280183737.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite6993903272280183737.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6993903272280183737.adam/part-00000-35f3d3c4-a931-4a10-922c-875f15ca5ee8-c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite6993903272280183737.adam/.part-00002-35f3d3c4-a931-4a10-922c-875f15ca5ee8-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6993903272280183737.adam/.part-00000-35f3d3c4-a931-4a10-922c-875f15ca5ee8-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6993903272280183737.adam/._readGroups.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite6993903272280183737.adam/.part-00001-35f3d3c4-a931-4a10-922c-875f15ca5ee8-c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/.TempSuite9051769536400586133.sam.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7945428461910845036
/tmp/adamTestMvnp6vi9tr/random.vcf5906002742433606446.vcf
/tmp/adamTestMvnp6vi9tr/TempSuite7649100605603810938.adam
/tmp/adamTestMvnp6vi9tr/TempSuite7649100605603810938.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7649100605603810938.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite7649100605603810938.adam/_partitionedByStartPos
/tmp/adamTestMvnp6vi9tr/TempSuite7649100605603810938.adam/referenceName=1
/tmp/adamTestMvnp6vi9tr/TempSuite7649100605603810938.adam/referenceName=1/positionBin=0
/tmp/adamTestMvnp6vi9tr/TempSuite7649100605603810938.adam/referenceName=1/positionBin=0/.part-00000-908e22e6-9f67-4021-8403-ec012f7247f8.c000.snappy.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7649100605603810938.adam/referenceName=1/positionBin=0/part-00000-908e22e6-9f67-4021-8403-ec012f7247f8.c000.snappy.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite7649100605603810938.adam/._partitionedByStartPos.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7649100605603810938.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite7649100605603810938.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/TempSuite7649100605603810938.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7649100605603810938.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7649100605603810938.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite7649100605603810938.adam/_header
/tmp/adamTestMvnp6vi9tr/TempSuite3115779991529084461
/tmp/adamTestMvnp6vi9tr/gencode.v7.annotation.trunc10.bed2785701150519936081.v7.annotation.trunc10.bed
/tmp/adamTestMvnp6vi9tr/TempSuite4182300744034221561
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite9183009447435377445.adam
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite9183009447435377445.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite9183009447435377445.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite9183009447435377445.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite9183009447435377445.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite9183009447435377445.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite9183009447435377445.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite9183009447435377445.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite9183009447435377445.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite9183009447435377445.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite9183009447435377445.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite9183009447435377445.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite9183009447435377445.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite9183009447435377445.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite9183009447435377445.adam/_metadata
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite9183009447435377445.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/SequenceDatasetSuite9183009447435377445.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8937744559898843958.adam
/tmp/adamTestMvnp6vi9tr/TempSuite8937744559898843958.adam/_common_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite8937744559898843958.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite8937744559898843958.adam/._references.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8937744559898843958.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8937744559898843958.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite8937744559898843958.adam/_SUCCESS
/tmp/adamTestMvnp6vi9tr/TempSuite8937744559898843958.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8937744559898843958.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite8937744559898843958.adam/._metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8937744559898843958.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnp6vi9tr/TempSuite8937744559898843958.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8937744559898843958.adam/_references.avro
/tmp/adamTestMvnp6vi9tr/TempSuite8937744559898843958.adam/_samples.avro
/tmp/adamTestMvnp6vi9tr/TempSuite8937744559898843958.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8937744559898843958.adam/_metadata
/tmp/adamTestMvnp6vi9tr/TempSuite8937744559898843958.adam/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8937744559898843958.adam/._samples.avro.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8937744559898843958.adam/._common_metadata.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8937744559898843958.adam/._header.crc
/tmp/adamTestMvnp6vi9tr/TempSuite8937744559898843958.adam/_header
/tmp/adamTestMvnp6vi9tr/TempSuite5014427226803669791
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7041330577014764758.gtf
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7041330577014764758.gtf/.part-00003.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7041330577014764758.gtf/.part-00000.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7041330577014764758.gtf/_SUCCESS
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7041330577014764758.gtf/part-00003
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7041330577014764758.gtf/part-00000
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7041330577014764758.gtf/part-00002
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7041330577014764758.gtf/._SUCCESS.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7041330577014764758.gtf/.part-00002.crc
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7041330577014764758.gtf/part-00001
/tmp/adamTestMvnp6vi9tr/FeatureDatasetFunctionsSuite7041330577014764758.gtf/.part-00001.crc
/tmp/adamTestMvnp6vi9tr/SliceDatasetSuite2848934898101757717
rm -rf ${ADAM_MVN_TMP_DIR}
+ rm -rf /tmp/adamTestMvnp6vi9tr

find . -name pom.xml \
    -exec sed -i.bak \
    -e "s:sun.io.serialization.extendedDebugInfo=true -Djava.io.tmpdir=${ADAM_MVN_TMP_DIR}:sun.io.serialization.extendedDebugInfo=true:g" \
    {} \;
+ find . -name pom.xml -exec sed -i.bak -e 's:sun.io.serialization.extendedDebugInfo=true -Djava.io.tmpdir=/tmp/adamTestMvnp6vi9tr:sun.io.serialization.extendedDebugInfo=true:g' '{}' ';'
find . -name "*.bak" -exec rm -f {} \;
+ find . -name '*.bak' -exec rm -f '{}' ';'

# run integration tests

# make a temp directory
ADAM_TMP_DIR=$(mktemp -d -t adamTestXXXXXXX)
mktemp -d -t adamTestXXXXXXX
++ mktemp -d -t adamTestXXXXXXX
+ ADAM_TMP_DIR=/tmp/adamTestSKnnPTK

# Just to be paranoid.. use a directory internal to the ADAM_TMP_DIR
ADAM_TMP_DIR=$ADAM_TMP_DIR/deleteMePleaseThisIsNoLongerNeeded
+ ADAM_TMP_DIR=/tmp/adamTestSKnnPTK/deleteMePleaseThisIsNoLongerNeeded
mkdir $ADAM_TMP_DIR
+ mkdir /tmp/adamTestSKnnPTK/deleteMePleaseThisIsNoLongerNeeded

# set the TMPDIR envar, which is used by python to choose where to make temp directories
export TMPDIR=${ADAM_TMP_DIR}
+ export TMPDIR=/tmp/adamTestSKnnPTK/deleteMePleaseThisIsNoLongerNeeded
+ TMPDIR=/tmp/adamTestSKnnPTK/deleteMePleaseThisIsNoLongerNeeded

pushd $PROJECT_ROOT
+ pushd /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/scripts/..
~/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu ~/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu

# Copy the jar into our temp space for testing
cp -r . $ADAM_TMP_DIR
+ cp -r . /tmp/adamTestSKnnPTK/deleteMePleaseThisIsNoLongerNeeded
popd
+ popd
~/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu

pushd $ADAM_TMP_DIR
+ pushd /tmp/adamTestSKnnPTK/deleteMePleaseThisIsNoLongerNeeded
/tmp/adamTestSKnnPTK/deleteMePleaseThisIsNoLongerNeeded ~/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu

# what hadoop version are we on? format string for downloading spark assembly
if [[ $HADOOP_VERSION =~ ^2\.7 ]]; then
    HADOOP=hadoop2.7
else
    echo "Unknown Hadoop version."
    exit 1
fi
+ [[ 2.7.5 =~ ^2\.7 ]]
+ HADOOP=hadoop2.7

# set spark artifact string for downloading assembly
SPARK=spark-${SPARK_VERSION}
+ SPARK=spark-2.4.6
    
# download prepackaged spark assembly

# Spark 2.4.3+ and less than 3.0.0 needs special case for Scala 2.12
if [ ${SCALA_VERSION} == 2.12 ] && [ ${SPARK_VERSION} == 2.4.6 ]
then
    curl \
        -L "https://www.apache.org/dyn/mirrors/mirrors.cgi?action=download&filename=spark/${SPARK}/${SPARK}-bin-without-hadoop-scala-2.12.tgz" \
        -o ${SPARK}-bin-without-hadoop-scala-2.12.tgz

    tar xzvf ${SPARK}-bin-without-hadoop-scala-2.12.tgz
    export SPARK_HOME=${ADAM_TMP_DIR}/${SPARK}-bin-without-hadoop-scala-2.12

    curl \
        -L "https://www.apache.org/dyn/mirrors/mirrors.cgi?action=download&filename=hadoop/core/hadoop-2.7.7/hadoop-2.7.7.tar.gz" \
        -o hadoop-2.7.7.tar.gz

    tar xzvf hadoop-2.7.7.tar.gz

    # remove references to avro 1.7.x
    find hadoop-2.7.7 -name *.jar | grep avro | xargs rm

    # download avro 1.8.x
    #curl \
    #    -L "https://repo1.maven.org/maven2/org/apache/avro/avro/1.8.2/avro-1.8.2.jar" \
    #    -o hadoop-2.7.7/share/hadoop/common/avro-1.8.2.jar

    export SPARK_DIST_CLASSPATH=$(hadoop-2.7.7/bin/hadoop classpath)
else
    curl \
        -v \
        -L "https://www.apache.org/dyn/mirrors/mirrors.cgi?action=download&filename=spark/${SPARK}/${SPARK}-bin-${HADOOP}.tgz" \
        -o ${SPARK}-bin-${HADOOP}.tgz

    tar xzvf ${SPARK}-bin-${HADOOP}.tgz
    export SPARK_HOME=${ADAM_TMP_DIR}/${SPARK}-bin-${HADOOP}
fi
+ '[' 2.11 == 2.12 ']'
+ curl -v -L 'https://www.apache.org/dyn/mirrors/mirrors.cgi?action=download&filename=spark/spark-2.4.6/spark-2.4.6-bin-hadoop2.7.tgz' -o spark-2.4.6-bin-hadoop2.7.tgz
*   Trying 95.216.26.30...
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0* Connected to www.apache.org (95.216.26.30) port 443 (#0)
* ALPN, offering http/1.1
* Cipher selection: ALL:!EXPORT:!EXPORT40:!EXPORT56:!aNULL:!LOW:!RC4:@STRENGTH
* successfully set certificate verify locations:
*   CAfile: /home/jenkins/anaconda2/ssl/cacert.pem
  CApath: none
* TLSv1.2 (OUT), TLS header, Certificate Status (22):
} [5 bytes data]
* TLSv1.2 (OUT), TLS handshake, Client hello (1):
} [512 bytes data]
* TLSv1.2 (IN), TLS handshake, Server hello (2):
{ [108 bytes data]
* TLSv1.2 (IN), TLS handshake, Certificate (11):
{ [4639 bytes data]
* TLSv1.2 (IN), TLS handshake, Server key exchange (12):
{ [333 bytes data]
* TLSv1.2 (IN), TLS handshake, Server finished (14):
{ [4 bytes data]
* TLSv1.2 (OUT), TLS handshake, Client key exchange (16):
} [70 bytes data]
* TLSv1.2 (OUT), TLS change cipher, Client hello (1):
} [1 bytes data]
* TLSv1.2 (OUT), TLS handshake, Finished (20):
} [16 bytes data]
* TLSv1.2 (IN), TLS change cipher, Client hello (1):
{ [1 bytes data]
* TLSv1.2 (IN), TLS handshake, Finished (20):
{ [16 bytes data]
* SSL connection using TLSv1.2 / ECDHE-RSA-AES256-GCM-SHA384
* ALPN, server accepted to use http/1.1
* Server certificate:
*  subject: OU=Domain Control Validated; OU=PositiveSSL Wildcard; CN=*.apache.org
*  start date: Jul  1 00:00:00 2019 GMT
*  expire date: Jun 30 23:59:59 2021 GMT
*  subjectAltName: host "www.apache.org" matched cert's "*.apache.org"
*  issuer: C=GB; ST=Greater Manchester; L=Salford; O=Sectigo Limited; CN=Sectigo RSA Domain Validation Secure Server CA
*  SSL certificate verify ok.

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0} [5 bytes data]
> GET /dyn/mirrors/mirrors.cgi?action=download&filename=spark/spark-2.4.6/spark-2.4.6-bin-hadoop2.7.tgz HTTP/1.1
> Host: www.apache.org
> User-Agent: curl/7.49.0
> Accept: */*
> 
{ [5 bytes data]
< HTTP/1.1 302 Found
< Date: Tue, 20 Oct 2020 02:16:58 GMT
< Server: Apache
< Cache-Control: private, max-age=3600
< Location: https://mirrors.sonic.net/apache/spark/spark-2.4.6/spark-2.4.6-bin-hadoop2.7.tgz
< Expires: Tue, 20 Oct 2020 03:16:58 GMT
< Content-Length: 0
< 

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
* Connection #0 to host www.apache.org left intact
* Issue another request to this URL: 'https://mirrors.sonic.net/apache/spark/spark-2.4.6/spark-2.4.6-bin-hadoop2.7.tgz'
*   Trying 157.131.0.16...
* Connected to mirrors.sonic.net (157.131.0.16) port 443 (#1)
* ALPN, offering http/1.1
* Cipher selection: ALL:!EXPORT:!EXPORT40:!EXPORT56:!aNULL:!LOW:!RC4:@STRENGTH
* successfully set certificate verify locations:
*   CAfile: /home/jenkins/anaconda2/ssl/cacert.pem
  CApath: none
* TLSv1.2 (OUT), TLS header, Certificate Status (22):
} [5 bytes data]
* TLSv1.2 (OUT), TLS handshake, Client hello (1):
} [512 bytes data]
* TLSv1.2 (IN), TLS handshake, Server hello (2):
{ [94 bytes data]
* TLSv1.2 (IN), TLS handshake, Certificate (11):
{ [4849 bytes data]
* TLSv1.2 (IN), TLS handshake, Server key exchange (12):
{ [589 bytes data]
* TLSv1.2 (IN), TLS handshake, Server finished (14):
{ [4 bytes data]
* TLSv1.2 (OUT), TLS handshake, Client key exchange (16):
} [70 bytes data]
* TLSv1.2 (OUT), TLS change cipher, Client hello (1):
} [1 bytes data]
* TLSv1.2 (OUT), TLS handshake, Finished (20):
} [16 bytes data]
* TLSv1.2 (IN), TLS change cipher, Client hello (1):
{ [1 bytes data]
* TLSv1.2 (IN), TLS handshake, Finished (20):
{ [16 bytes data]
* SSL connection using TLSv1.2 / ECDHE-RSA-AES128-GCM-SHA256
* ALPN, server did not agree to a protocol
* Server certificate:
*  subject: CN=mirrors.sonic.net
*  start date: Jan 23 00:00:00 2020 GMT
*  expire date: Jan 22 23:59:59 2022 GMT
*  subjectAltName: host "mirrors.sonic.net" matched cert's "mirrors.sonic.net"
*  issuer: C=GB; ST=Greater Manchester; L=Salford; O=Sectigo Limited; CN=Sectigo RSA Domain Validation Secure Server CA
*  SSL certificate verify ok.
} [5 bytes data]
> GET /apache/spark/spark-2.4.6/spark-2.4.6-bin-hadoop2.7.tgz HTTP/1.1
> Host: mirrors.sonic.net
> User-Agent: curl/7.49.0
> Accept: */*
> 
{ [5 bytes data]
< HTTP/1.1 404 Not Found
< Date: Tue, 20 Oct 2020 02:16:59 GMT
< Server: Apache/2.4.6 (CentOS)
< Content-Length: 335
< Content-Type: text/html; charset=iso-8859-1
< 
{ [5 bytes data]

100   335  100   335    0     0    448      0 --:--:-- --:--:-- --:--:--   448
* Connection #1 to host mirrors.sonic.net left intact
+ tar xzvf spark-2.4.6-bin-hadoop2.7.tgz

gzip: stdin: not in gzip format
tar: Child returned status 1
tar: Error is not recoverable: exiting now
Build step 'Execute shell' marked build as failure
Recording test results
Publishing Scoverage XML and HTML report...
Setting commit status on GitHub for https://github.com/bigdatagenomics/adam/commit/19acc911f2995a8df016c4a624f383deded47f6a
Finished: FAILURE