SuccessConsole Output

Started by upstream project "ADAM" build number 4452
originally caused by:
 Started by timer
[EnvInject] - Loading node environment variables.
Building remotely on amp-jenkins-staging-worker-02 (ubuntu ubuntu-gpu ubuntu-avx2 staging-02 staging) in workspace /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu
 > git rev-parse --is-inside-work-tree # timeout=10
Fetching changes from the remote Git repository
 > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10
Fetching upstream changes from https://github.com/bigdatagenomics/adam.git
 > git --version # timeout=10
 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/heads/*:refs/remotes/origin/*
Checking out Revision 520cbdd4c4cc9df1549d6100499816537e9b03fd (refs/remotes/origin/master)
 > git config core.sparsecheckout # timeout=10
 > git checkout -f 520cbdd4c4cc9df1549d6100499816537e9b03fd
 > git rev-list 520cbdd4c4cc9df1549d6100499816537e9b03fd # timeout=10
Cleaning workspace
 > git rev-parse --verify HEAD # timeout=10
Resetting working tree
 > git reset --hard # timeout=10
 > git clean -fdx # timeout=10
[EnvInject] - Executing scripts and injecting environment variables after the SCM step.
[EnvInject] - Injecting as environment variables the properties content 
JAVA_HOME=/usr/lib/jvm/java-8-oracle

[EnvInject] - Variables injected successfully.
[ubuntu] $ /bin/bash /tmp/hudson4446894397620748389.sh
+ set -e
+ unset SPARK_TESTING
+ export JAVA_HOME=/usr/lib/jvm/java-8-oracle
+ JAVA_HOME=/usr/lib/jvm/java-8-oracle
+ export CONDA_BIN=/home/anaconda/bin/
+ CONDA_BIN=/home/anaconda/bin/
+ export PATH=/usr/lib/jvm/java-8-oracle/bin/:/home/anaconda/bin/:/home/jenkins/gems/bin:/usr/local/go/bin:/home/jenkins/go-projects/bin:/home/jenkins/anaconda2/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games
+ PATH=/usr/lib/jvm/java-8-oracle/bin/:/home/anaconda/bin/:/home/jenkins/gems/bin:/usr/local/go/bin:/home/jenkins/go-projects/bin:/home/jenkins/anaconda2/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games
+ set +x
+ /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/scripts/jenkins-test

# make a tempdir for writing maven cruft to
ADAM_MVN_TMP_DIR=$(mktemp -d -t adamTestMvnXXXXXXX)
mktemp -d -t adamTestMvnXXXXXXX
++ mktemp -d -t adamTestMvnXXXXXXX
+ ADAM_MVN_TMP_DIR=/tmp/adamTestMvnhgcACDR

# add this tempdir to the poms...
find . -name pom.xml \
    -exec sed -i.bak \
    -e "s:sun.io.serialization.extendedDebugInfo=true:sun.io.serialization.extendedDebugInfo=true -Djava.io.tmpdir=${ADAM_MVN_TMP_DIR}:g" \
    {} \;
+ find . -name pom.xml -exec sed -i.bak -e 's:sun.io.serialization.extendedDebugInfo=true:sun.io.serialization.extendedDebugInfo=true -Djava.io.tmpdir=/tmp/adamTestMvnhgcACDR:g' '{}' ';'
find . -name "*.bak" -exec rm -f {} \;
+ find . -name '*.bak' -exec rm -f '{}' ';'

# variable declarations
export PATH=${JAVA_HOME}/bin/:${PATH}
+ export PATH=/usr/lib/jvm/java-8-oracle/bin/:/usr/lib/jvm/java-8-oracle/bin/:/home/anaconda/bin/:/home/jenkins/gems/bin:/usr/local/go/bin:/home/jenkins/go-projects/bin:/home/jenkins/anaconda2/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games
+ PATH=/usr/lib/jvm/java-8-oracle/bin/:/usr/lib/jvm/java-8-oracle/bin/:/home/anaconda/bin/:/home/jenkins/gems/bin:/usr/local/go/bin:/home/jenkins/go-projects/bin:/home/jenkins/anaconda2/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games
export MAVEN_OPTS="-Xmx1536m -XX:MaxPermSize=1g -Dfile.encoding=utf-8"
+ export 'MAVEN_OPTS=-Xmx1536m -XX:MaxPermSize=1g -Dfile.encoding=utf-8'
+ MAVEN_OPTS='-Xmx1536m -XX:MaxPermSize=1g -Dfile.encoding=utf-8'
DIR=$( cd $( dirname ${BASH_SOURCE[0]} ) && pwd )
 cd $( dirname ${BASH_SOURCE[0]} ) && pwd 
 dirname ${BASH_SOURCE[0]} 
+++ dirname /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/scripts/jenkins-test
++ cd /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/scripts
++ pwd
+ DIR=/home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/scripts
PROJECT_ROOT=${DIR}/..
+ PROJECT_ROOT=/home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/scripts/..
VERSION=$(grep "<version>" ${PROJECT_ROOT}/pom.xml  | head -2 | tail -1 | sed 's/ *<version>//g' | sed 's/<\/version>//g')
grep "<version>" ${PROJECT_ROOT}/pom.xml  | head -2 | tail -1 | sed 's/ *<version>//g' | sed 's/<\/version>//g'
++ grep '<version>' /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/scripts/../pom.xml
++ head -2
++ tail -1
++ sed 's/<\/version>//g'
++ sed 's/ *<version>//g'
+ VERSION=0.30.0-SNAPSHOT

# is the hadoop version set?
if ! [[ ${HADOOP_VERSION} ]];
then
    echo "HADOOP_VERSION environment variable is not set."
    echo "Please set this variable before running."
    
    exit 1
fi
+ [[ -n 2.7.5 ]]

# is the spark version set?
if ! [[ ${SPARK_VERSION} ]];
then
    echo "SPARK_VERSION environment variable is not set."
    echo "Please set this variable before running."
    
    exit 1
fi
+ [[ -n 2.4.4 ]]

set -e
+ set -e

# build defaults to Scala 2.11
if [ ${SCALAVER} == 2.11 ];
then
    # shouldn't be able to move to scala 2.11 twice
    set +e
    ./scripts/move_to_scala_2.11.sh
    if [[ $? == 0 ]];
    then
        echo "We have already moved to Scala 2.11, so running move_to_scala_2.11.sh a second time should fail, but error code was 0 (success)."
        exit 1
    fi
    set -e
fi
+ '[' 2.11 == 2.11 ']'
+ set +e
+ ./scripts/move_to_scala_2.11.sh
Scala version is already set to 2.11 (Scala artifacts have _2.11 version suffix in artifact name).
Cowardly refusing to move to Scala 2.11 a second time...
+ [[ 1 == 0 ]]
+ set -e

# move to Scala 2.12 if requested
if [ ${SCALAVER} == 2.12 ];
then
    set +e
    ./scripts/move_to_scala_2.12.sh
    set -e
fi
+ '[' 2.11 == 2.12 ']'

# print versions
echo "Testing ADAM version ${VERSION} on Spark ${SPARK_VERSION} and Hadoop ${HADOOP_VERSION}"
+ echo 'Testing ADAM version 0.30.0-SNAPSHOT on Spark 2.4.4 and Hadoop 2.7.5'
Testing ADAM version 0.30.0-SNAPSHOT on Spark 2.4.4 and Hadoop 2.7.5

# first, build the sources, run the unit tests, and generate a coverage report
mvn clean \
    -Dhadoop.version=${HADOOP_VERSION}
+ mvn clean -Dhadoop.version=2.7.5
Java HotSpot(TM) 64-Bit Server VM warning: ignoring option MaxPermSize=1g; support was removed in 8.0
[INFO] Scanning for projects...
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Build Order:
[INFO] 
[INFO] ADAM_2.11
[INFO] ADAM_2.11: Shader workaround
[INFO] ADAM_2.11: Avro-to-Dataset codegen utils
[INFO] ADAM_2.11: Core
[INFO] ADAM_2.11: APIs for Java, Python
[INFO] ADAM_2.11: CLI
[INFO] ADAM_2.11: Assembly
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ADAM_2.11 0.30.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ adam-parent-spark2_2.11 ---
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ADAM_2.11: Shader workaround 0.30.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ adam-shade-spark2_2.11 ---
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ADAM_2.11: Avro-to-Dataset codegen utils 0.30.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ adam-codegen-spark2_2.11 ---
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ADAM_2.11: Core 0.30.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ adam-core-spark2_2.11 ---
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ADAM_2.11: APIs for Java, Python 0.30.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ adam-apis-spark2_2.11 ---
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ADAM_2.11: CLI 0.30.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ adam-cli-spark2_2.11 ---
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ADAM_2.11: Assembly 0.30.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ adam-assembly-spark2_2.11 ---
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO] 
[INFO] ADAM_2.11 .......................................... SUCCESS [  0.186 s]
[INFO] ADAM_2.11: Shader workaround ....................... SUCCESS [  0.008 s]
[INFO] ADAM_2.11: Avro-to-Dataset codegen utils ........... SUCCESS [  0.008 s]
[INFO] ADAM_2.11: Core .................................... SUCCESS [  0.011 s]
[INFO] ADAM_2.11: APIs for Java, Python ................... SUCCESS [  0.002 s]
[INFO] ADAM_2.11: CLI ..................................... SUCCESS [  0.036 s]
[INFO] ADAM_2.11: Assembly ................................ SUCCESS [  0.002 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESS
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 0.521 s
[INFO] Finished at: 2019-12-01T13:22:49-08:00
[INFO] Final Memory: 23M/1472M
[INFO] ------------------------------------------------------------------------
    
# if this is a pull request, we need to set the coveralls pr id
if [[ ! -z $ghprbPullId ]];
then
    COVERALLS_PRB_OPTION="-DpullRequest=${ghprbPullId}"
fi
+ [[ ! -z '' ]]

# coveralls token should not be visible
set +x +v
+ set +x +v
Java HotSpot(TM) 64-Bit Server VM warning: ignoring option MaxPermSize=1g; support was removed in 8.0
[INFO] Scanning for projects...
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Build Order:
[INFO] 
[INFO] ADAM_2.11
[INFO] ADAM_2.11: Shader workaround
[INFO] ADAM_2.11: Avro-to-Dataset codegen utils
[INFO] ADAM_2.11: Core
[INFO] ADAM_2.11: APIs for Java, Python
[INFO] ADAM_2.11: CLI
[INFO] ADAM_2.11: Assembly
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ADAM_2.11 0.30.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-parent-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-parent-spark2_2.11 ---
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-parent-spark2_2.11 ---
[INFO] Modified 0 of 241 .scala files
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-parent-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-parent-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] >>> scoverage-maven-plugin:1.1.1:report (default-cli) > [scoverage]test @ adam-parent-spark2_2.11 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-parent-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-parent-spark2_2.11 ---
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-parent-spark2_2.11 ---
[INFO] Modified 0 of 241 .scala files
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:pre-compile (default-cli) @ adam-parent-spark2_2.11 ---
[INFO] Skipping SCoverage execution for project with packaging type 'pom'
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-parent-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:post-compile (default-cli) @ adam-parent-spark2_2.11 ---
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-parent-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] <<< scoverage-maven-plugin:1.1.1:report (default-cli) < [scoverage]test @ adam-parent-spark2_2.11 <<<
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:report (default-cli) @ adam-parent-spark2_2.11 ---
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ADAM_2.11: Shader workaround 0.30.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-shade-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-shade-spark2_2.11 ---
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-shade-spark2_2.11 ---
[INFO] Modified 0 of 0 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-shade-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-shade-spark2_2.11 ---
[INFO] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/src/main/java:-1: info: compiling
[INFO] Compiling 1 source files to /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/target/2.11.12/classes at 1575235382943
[INFO] prepare-compile in 0 s
[INFO] compile in 1 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-shade-spark2_2.11 ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 1 source file to /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/target/2.11.12/classes
[INFO] 
[INFO] --- plexus-component-metadata:1.5.5:generate-metadata (default) @ adam-shade-spark2_2.11 ---
[INFO] Discovered 1 component descriptors(s)
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-shade-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/src/test/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-shade-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-shade-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-shade-spark2_2.11 ---
[INFO] No tests to run.
[INFO] 
[INFO] >>> scoverage-maven-plugin:1.1.1:report (default-cli) > [scoverage]test @ adam-shade-spark2_2.11 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-shade-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-shade-spark2_2.11 ---
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-shade-spark2_2.11 ---
[INFO] Modified 0 of 0 .scala files
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:pre-compile (default-cli) @ adam-shade-spark2_2.11 ---
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-shade-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-shade-spark2_2.11 ---
[INFO] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/src/main/java:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/target/generated-sources/annotations:-1: info: compiling
[INFO] Compiling 1 source files to /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/target/2.11.12/scoverage-classes at 1575235385506
[INFO] [info] Cleaning datadir [/home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/target/scoverage-data]
[INFO] [info] Beginning coverage instrumentation
[INFO] [info] Instrumentation completed [0 statements]
[INFO] [info] Wrote instrumentation file [/home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/target/scoverage-data/scoverage.coverage.xml]
[INFO] [info] Will write measurement data to [/home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/target/scoverage-data]
[INFO] prepare-compile in 0 s
[INFO] compile in 1 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-shade-spark2_2.11 ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 1 source file to /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/target/2.11.12/scoverage-classes
[INFO] 
[INFO] --- plexus-component-metadata:1.5.5:generate-metadata (default) @ adam-shade-spark2_2.11 ---
[INFO] Discovered 1 component descriptors(s)
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:post-compile (default-cli) @ adam-shade-spark2_2.11 ---
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-shade-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/src/test/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-shade-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-shade-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-shade-spark2_2.11 ---
[INFO] No tests to run.
[INFO] 
[INFO] <<< scoverage-maven-plugin:1.1.1:report (default-cli) < [scoverage]test @ adam-shade-spark2_2.11 <<<
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:report (default-cli) @ adam-shade-spark2_2.11 ---
[INFO] [scoverage] Generating cobertura XML report...
[INFO] [scoverage] Generating scoverage XML report...
[INFO] [scoverage] Generating scoverage HTML report...
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ADAM_2.11: Avro-to-Dataset codegen utils 0.30.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-codegen-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-codegen-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-codegen-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-codegen-spark2_2.11 ---
[INFO] Modified 0 of 4 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-codegen-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-codegen-spark2_2.11 ---
[INFO] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/src/main/scala:-1: info: compiling
[INFO] Compiling 4 source files to /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/target/2.11.12/classes at 1575235387465
[INFO] prepare-compile in 0 s
[INFO] compile in 4 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-codegen-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-codegen-spark2_2.11 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-codegen-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/src/test/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-codegen-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-codegen-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-codegen-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-codegen-spark2_2.11 ---
Discovery starting.
Discovery completed in 68 milliseconds.
Run starting. Expected test count is: 0
DiscoverySuite:
Run completed in 96 milliseconds.
Total number of tests run: 0
Suites: completed 1, aborted 0
Tests: succeeded 0, failed 0, canceled 0, ignored 0, pending 0
No tests were executed.
[INFO] 
[INFO] >>> scoverage-maven-plugin:1.1.1:report (default-cli) > [scoverage]test @ adam-codegen-spark2_2.11 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-codegen-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-codegen-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-codegen-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-codegen-spark2_2.11 ---
[INFO] Modified 0 of 4 .scala files
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:pre-compile (default-cli) @ adam-codegen-spark2_2.11 ---
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-codegen-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-codegen-spark2_2.11 ---
[INFO] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/src/main/scala:-1: info: compiling
[INFO] Compiling 4 source files to /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/target/2.11.12/scoverage-classes at 1575235392345
[INFO] [info] Cleaning datadir [/home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/target/scoverage-data]
[INFO] [info] Beginning coverage instrumentation
[INFO] [info] Instrumentation completed [0 statements]
[INFO] [info] Wrote instrumentation file [/home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/target/scoverage-data/scoverage.coverage.xml]
[INFO] [info] Will write measurement data to [/home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/target/scoverage-data]
[INFO] prepare-compile in 0 s
[INFO] compile in 3 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-codegen-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:post-compile (default-cli) @ adam-codegen-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-codegen-spark2_2.11 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-codegen-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/src/test/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-codegen-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-codegen-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-codegen-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-codegen-spark2_2.11 ---
Discovery starting.
Discovery completed in 50 milliseconds.
Run starting. Expected test count is: 0
DiscoverySuite:
Run completed in 74 milliseconds.
Total number of tests run: 0
Suites: completed 1, aborted 0
Tests: succeeded 0, failed 0, canceled 0, ignored 0, pending 0
No tests were executed.
[INFO] 
[INFO] <<< scoverage-maven-plugin:1.1.1:report (default-cli) < [scoverage]test @ adam-codegen-spark2_2.11 <<<
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:report (default-cli) @ adam-codegen-spark2_2.11 ---
[INFO] [scoverage] Generating cobertura XML report...
[INFO] [scoverage] Generating scoverage XML report...
[INFO] [scoverage] Generating scoverage HTML report...
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ADAM_2.11: Core 0.30.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
Downloading: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/bdg-formats/bdg-formats/0.15.0-SNAPSHOT/maven-metadata.xml
793/793 B   
            
Downloaded: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/bdg-formats/bdg-formats/0.15.0-SNAPSHOT/maven-metadata.xml (793 B at 1.4 KB/sec)
Downloading: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/bdg-formats/bdg-formats/0.15.0-SNAPSHOT/bdg-formats-0.15.0-20191130.121443-45.pom
4/6 KB      
6/6 KB   
         
Downloaded: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/bdg-formats/bdg-formats/0.15.0-SNAPSHOT/bdg-formats-0.15.0-20191130.121443-45.pom (6 KB at 33.7 KB/sec)
Downloading: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/bdg-formats/bdg-formats/0.15.0-SNAPSHOT/bdg-formats-0.15.0-20191130.121443-45.jar
4/179 KB   
8/179 KB   
8/179 KB   
12/179 KB   
14/179 KB   
14/179 KB   
18/179 KB   
22/179 KB   
26/179 KB   
30/179 KB   
34/179 KB   
38/179 KB   
42/179 KB   
42/179 KB   
46/179 KB   
50/179 KB   
54/179 KB   
57/179 KB   
61/179 KB   
65/179 KB   
69/179 KB   
71/179 KB   
73/179 KB   
77/179 KB   
81/179 KB   
85/179 KB   
89/179 KB   
93/179 KB   
97/179 KB   
101/179 KB   
103/179 KB   
107/179 KB   
111/179 KB   
115/179 KB   
119/179 KB   
123/179 KB   
127/179 KB   
131/179 KB   
135/179 KB   
139/179 KB   
143/179 KB   
147/179 KB   
151/179 KB   
155/179 KB   
159/179 KB   
163/179 KB   
167/179 KB   
171/179 KB   
175/179 KB   
179/179 KB   
             
Downloaded: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/bdg-formats/bdg-formats/0.15.0-SNAPSHOT/bdg-formats-0.15.0-20191130.121443-45.jar (179 KB at 531.7 KB/sec)
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-core-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-core-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-core-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala added.
[INFO] Source directory: /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/generated-sources/src/main/scala added.
[INFO] 
[INFO] --- exec-maven-plugin:1.5.0:java (generate-scala-products) @ adam-core-spark2_2.11 ---
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] 
[INFO] --- exec-maven-plugin:1.5.0:java (generate-scala-projection-fields) @ adam-core-spark2_2.11 ---
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-core-spark2_2.11 ---
[INFO] Modified 2 of 203 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-core-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-core-spark2_2.11 ---
[INFO] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/java:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/generated-sources/src/main/scala:-1: info: compiling
[INFO] Compiling 139 source files to /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/2.11.12/classes at 1575235405192
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicDataset.scala:3099: warning: no valid targets for annotation on value uTag - it is discarded unused. You may specify targets with meta-annotations, e.g. @(transient @getter)
[WARNING]   @transient val uTag: TypeTag[U]
[WARNING]    ^
[WARNING] warning: there were 89 deprecation warnings; re-run with -deprecation for details
[WARNING] warning: there were 5 feature warnings; re-run with -feature for details
[WARNING] three warnings found
[INFO] prepare-compile in 0 s
[INFO] compile in 30 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-core-spark2_2.11 ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 6 source files to /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/2.11.12/classes
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-core-spark2_2.11 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-core-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 152 resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-core-spark2_2.11 ---
[INFO] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala:-1: info: compiling
[INFO] Compiling 70 source files to /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/2.11.12/test-classes at 1575235437580
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/algorithms/consensus/NormalizationUtilsSuite.scala:59: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]       .build()
[WARNING]             ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/algorithms/consensus/NormalizationUtilsSuite.scala:61: warning: method richRecordToRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     val new_cigar = NormalizationUtils.leftAlignIndel(read)
[WARNING]                                                       ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/algorithms/consensus/NormalizationUtilsSuite.scala:66: warning: method richRecordToRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     assert(RichAlignment(read).samtoolsCigar.getReadLength === new_cigar.getReadLength)
[WARNING]                          ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/SAMRecordConverterSuite.scala:54: warning: method getNotPrimaryAlignmentFlag in class SAMRecord is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(!testAlignment.getPrimaryAlignment === testSAMRecord.getNotPrimaryAlignmentFlag)
[WARNING]                                                                 ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/SAMRecordConverterSuite.scala:89: warning: method getNotPrimaryAlignmentFlag in class SAMRecord is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(!testAlignment.getPrimaryAlignment === testSAMRecord.getNotPrimaryAlignmentFlag)
[WARNING]                                                                 ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:53: warning: method extractDictionary in object SAMSequenceDictionaryExtractor is deprecated: see corresponding Javadoc for more information.
[WARNING]     SequenceDictionary(SAMSequenceDictionaryExtractor.extractDictionary(new File(path)))
[WARNING]                                                       ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/CoverageSuite.scala:37: warning: variable start in class Feature is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(coverageAfterConversion.start == featureToConvert.start)
[WARNING]                                                              ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/CoverageSuite.scala:38: warning: variable end in class Feature is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(coverageAfterConversion.end == featureToConvert.end)
[WARNING]                                                            ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/CoverageSuite.scala:40: warning: variable score in class Feature is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(coverageAfterConversion.count == featureToConvert.score)
[WARNING]                                                              ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/CoverageSuite.scala:57: warning: variable start in class Feature is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(coverageAfterConversion.start == featureToConvert.start)
[WARNING]                                                              ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/CoverageSuite.scala:58: warning: variable end in class Feature is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(coverageAfterConversion.end == featureToConvert.end)
[WARNING]                                                            ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/CoverageSuite.scala:60: warning: variable score in class Feature is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(coverageAfterConversion.count == featureToConvert.score)
[WARNING]                                                              ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/CoverageSuite.scala:61: warning: variable sampleId in class Feature is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(coverageAfterConversion.optSampleId == Some(featureToConvert.sampleId))
[WARNING]                                                                         ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/MdTagSuite.scala:194: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     assert(read.mdTag.get.end === read.getEnd)
[WARNING]            ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/MdTagSuite.scala:475: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     val tag = read.mdTag.get
[WARNING]               ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/MdTagSuite.scala:482: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     assert(tag.getReference(read) === "AAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGGGGAAAAAAAAAAGGGGGGGGGGAAAAAAAAAAA")
[WARNING]                             ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/MdTagSuite.scala:495: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     val tag = read.mdTag.get
[WARNING]               ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/MdTagSuite.scala:496: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     assert(tag.getReference(read, withGaps = true) === "AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGGGGAAAAAAAAAAA")
[WARNING]                             ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/MdTagSuite.scala:510: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     val newTag = MdTag.moveAlignment(read, newCigar)
[WARNING]                                      ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/MdTagSuite.scala:526: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     val newTag = MdTag.moveAlignment(read, newCigar, "AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA", 100L)
[WARNING]                                      ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/MdTagSuite.scala:544: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     val newTag = MdTag.moveAlignment(read, newCigar, "GGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA", 100L)
[WARNING]                                      ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/MdTagSuite.scala:562: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     val newTag = MdTag.moveAlignment(read, newCigar, "AAAAAAAAAAGGGGGGGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA", 100L)
[WARNING]                                      ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/MdTagSuite.scala:580: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     val newTag = MdTag.moveAlignment(read, newCigar, "AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA", 100L)
[WARNING]                                      ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/SequenceDictionarySuite.scala:48: warning: method extractDictionary in object SAMSequenceDictionaryExtractor is deprecated: see corresponding Javadoc for more information.
[WARNING]     val ssd = SAMSequenceDictionaryExtractor.extractDictionary(new File(path))
[WARNING]                                              ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/SequenceDictionarySuite.scala:62: warning: method extractDictionary in object SAMSequenceDictionaryExtractor is deprecated: see corresponding Javadoc for more information.
[WARNING]     val ssd = SAMSequenceDictionaryExtractor.extractDictionary(new File(path))
[WARNING]                                              ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/SequenceDictionarySuite.scala:75: warning: method extractDictionary in object SAMSequenceDictionaryExtractor is deprecated: see corresponding Javadoc for more information.
[WARNING]     val ssd = SAMSequenceDictionaryExtractor.extractDictionary(new File(path))
[WARNING]                                              ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/ADAMContextSuite.scala:832: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val df = SQLContext.getOrCreate(sc).read.parquet(outputDir)
[WARNING]                         ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/ADAMContextSuite.scala:845: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val df = SQLContext.getOrCreate(sc).read.parquet(outputDir)
[WARNING]                         ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/ADAMContextSuite.scala:857: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val df = SQLContext.getOrCreate(sc).read.parquet(outputDir)
[WARNING]                         ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/ADAMContextSuite.scala:870: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val df = SQLContext.getOrCreate(sc).read.parquet(outputDir)
[WARNING]                         ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/ADAMContextSuite.scala:883: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val df = SQLContext.getOrCreate(sc).read.parquet(outputDir)
[WARNING]                         ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/ADAMContextSuite.scala:896: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val df = SQLContext.getOrCreate(sc).read.parquet(outputDir)
[WARNING]                         ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/ADAMContextSuite.scala:907: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val df = SQLContext.getOrCreate(sc).read.parquet(outputDir)
[WARNING]                         ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/ADAMContextSuite.scala:918: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val df = SQLContext.getOrCreate(sc).read.parquet(outputDir)
[WARNING]                         ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/ADAMContextSuite.scala:929: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val df = SQLContext.getOrCreate(sc).read.parquet(outputDir)
[WARNING]                         ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/ADAMContextSuite.scala:943: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val df = SQLContext.getOrCreate(sc).read.parquet(outputDir)
[WARNING]                         ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/ADAMContextSuite.scala:956: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val df = SQLContext.getOrCreate(sc).read.parquet(outputDir)
[WARNING]                         ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/ADAMContextSuite.scala:968: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val df = SQLContext.getOrCreate(sc).read.parquet(outputDir)
[WARNING]                         ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/ADAMContextSuite.scala:980: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val df = SQLContext.getOrCreate(sc).read.parquet(outputDir)
[WARNING]                         ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/ADAMContextSuite.scala:993: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val df = SQLContext.getOrCreate(sc).read.parquet(outputDir)
[WARNING]                         ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/ADAMContextSuite.scala:1005: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val df = SQLContext.getOrCreate(sc).read.parquet(outputDir)
[WARNING]                         ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/ADAMContextSuite.scala:1018: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val df = SQLContext.getOrCreate(sc).read.parquet(outputDir)
[WARNING]                         ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/ADAMContextSuite.scala:1031: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val df = SQLContext.getOrCreate(sc).read.parquet(outputDir)
[WARNING]                         ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/ADAMContextSuite.scala:1044: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val df = SQLContext.getOrCreate(sc).read.parquet(outputDir)
[WARNING]                         ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/feature/CoverageDatasetSuite.scala:307: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/feature/CoverageDatasetSuite.scala:338: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/feature/CoverageDatasetSuite.scala:369: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/feature/CoverageDatasetSuite.scala:400: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/feature/CoverageDatasetSuite.scala:431: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/feature/CoverageDatasetSuite.scala:462: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/feature/FeatureDatasetSuite.scala:1022: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/feature/FeatureDatasetSuite.scala:1053: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/feature/FeatureDatasetSuite.scala:1081: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/feature/FeatureDatasetSuite.scala:1112: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/feature/FeatureDatasetSuite.scala:1143: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/feature/FeatureDatasetSuite.scala:1174: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/fragment/FragmentDatasetSuite.scala:400: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/fragment/FragmentDatasetSuite.scala:431: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/fragment/FragmentDatasetSuite.scala:459: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/fragment/FragmentDatasetSuite.scala:490: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/fragment/FragmentDatasetSuite.scala:521: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/fragment/FragmentDatasetSuite.scala:552: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/read/AlignmentDatasetSuite.scala:1438: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/read/AlignmentDatasetSuite.scala:1460: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/read/AlignmentDatasetSuite.scala:1491: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/read/AlignmentDatasetSuite.scala:1519: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/read/AlignmentDatasetSuite.scala:1550: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/read/AlignmentDatasetSuite.scala:1581: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/read/AlignmentDatasetSuite.scala:1613: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTargetSuite.scala:83: warning: method richRecordToRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     assert(TargetOrdering.contains(targets.head, read))
[WARNING]                                                  ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTargetSuite.scala:191: warning: method richRecordToRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]         if (read.getStart < 105) {
[WARNING]             ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTargetSuite.scala:194: warning: method richRecordToRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]           assert(targets.head.readRange.start === read.getStart)
[WARNING]                                                   ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTargetSuite.scala:195: warning: method richRecordToRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]           assert(targets.head.readRange.end === read.getEnd)
[WARNING]                                                 ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/read/realignment/IndelRealignmentTargetSuite.scala:196: warning: method richRecordToRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]           assert(check_indel(targets.head, read))
[WARNING]                                            ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:406: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:437: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:465: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:496: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:527: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:558: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:697: warning: variable end in class Genotype is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(first.end === 16157602L)
[WARNING]                  ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:698: warning: variable end in class Variant is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(first.variant.end === 16157602L)
[WARNING]                          ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:698: warning: variable variant in class Genotype is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(first.variant.end === 16157602L)
[WARNING]                  ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:699: warning: variable annotation in class Variant is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(first.variant.annotation === null)
[WARNING]                          ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:699: warning: variable variant in class Genotype is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(first.variant.annotation === null)
[WARNING]                  ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:710: warning: variable end in class Genotype is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(firstVcfGenotype.end === 16157602L)
[WARNING]                             ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:712: warning: variable end in class Variant is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(firstVcfGenotype.variant.end === 16157602L)
[WARNING]                                     ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:712: warning: variable variant in class Genotype is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(firstVcfGenotype.variant.end === 16157602L)
[WARNING]                             ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:714: warning: variable annotation in class Variant is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(firstVcfGenotype.variant.annotation === null)
[WARNING]                                     ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:714: warning: variable variant in class Genotype is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(firstVcfGenotype.variant.annotation === null)
[WARNING]                             ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:745: warning: variable end in class Genotype is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(first.end === 16157602L)
[WARNING]                  ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:746: warning: variable end in class Variant is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(first.variant.end === 16157602L)
[WARNING]                          ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:746: warning: variable variant in class Genotype is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(first.variant.end === 16157602L)
[WARNING]                  ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:747: warning: variable attributes in class VariantAnnotation is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(first.variant.annotation.attributes.get("END") === "16157602")
[WARNING]                                     ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:747: warning: variable annotation in class Variant is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(first.variant.annotation.attributes.get("END") === "16157602")
[WARNING]                          ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:747: warning: variable variant in class Genotype is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(first.variant.annotation.attributes.get("END") === "16157602")
[WARNING]                  ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:758: warning: variable end in class Genotype is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(firstVcfGenotype.end === 16157602L)
[WARNING]                             ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:759: warning: variable end in class Variant is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(firstVcfGenotype.variant.end === 16157602L)
[WARNING]                                     ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:759: warning: variable variant in class Genotype is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(firstVcfGenotype.variant.end === 16157602L)
[WARNING]                             ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:760: warning: variable attributes in class VariantAnnotation is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(firstVcfGenotype.variant.annotation.attributes.get("END") === "16157602")
[WARNING]                                                ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:760: warning: variable annotation in class Variant is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(firstVcfGenotype.variant.annotation.attributes.get("END") === "16157602")
[WARNING]                                     ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/GenotypeDatasetSuite.scala:760: warning: variable variant in class Genotype is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(firstVcfGenotype.variant.annotation.attributes.get("END") === "16157602")
[WARNING]                             ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/VariantContextDatasetSuite.scala:181: warning: variable start in class Genotype is deprecated: see corresponding Javadoc for more information.
[WARNING]     val filtered = vcs.toGenotypes().rdd.filter(_.start == 66631043)
[WARNING]                                                   ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/VariantDatasetSuite.scala:422: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/VariantDatasetSuite.scala:453: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/VariantDatasetSuite.scala:481: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/VariantDatasetSuite.scala:512: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/VariantDatasetSuite.scala:543: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rdd/variant/VariantDatasetSuite.scala:574: warning: method getOrCreate in object SQLContext is deprecated: Use SparkSession.builder instead
[WARNING]     val sqlContext = SQLContext.getOrCreate(sc)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichAlignmentSuite.scala:31: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     assert(recordWithoutClipping.unclippedStart == 42L)
[WARNING]            ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichAlignmentSuite.scala:32: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     assert(recordWithClipping.unclippedStart == 40L)
[WARNING]            ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichAlignmentSuite.scala:33: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     assert(recordWithHardClipping.unclippedStart == 37L)
[WARNING]            ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichAlignmentSuite.scala:41: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     assert(recordWithoutClipping.unclippedEnd == 20L)
[WARNING]            ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichAlignmentSuite.scala:42: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     assert(recordWithClipping.unclippedEnd == 20L)
[WARNING]            ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichAlignmentSuite.scala:43: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     assert(recordWithHardClipping.unclippedEnd == 20L)
[WARNING]            ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichAlignmentSuite.scala:49: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     assert(rec.tags.size === 2)
[WARNING]            ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichAlignmentSuite.scala:50: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     assert(rec.tags(0) === Attribute("XX", TagType.Integer, 3))
[WARNING]            ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichAlignmentSuite.scala:51: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     assert(rec.tags(1) === Attribute("YY", TagType.String, "foo"))
[WARNING]            ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichAlignmentSuite.scala:57: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     val overlaps = unmappedRead.overlapsReferencePosition(ReferencePosition("chr1", 10))
[WARNING]                    ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichCigarSuite.scala:34: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     val newCigar = RichCigar(new Cigar(read.samtoolsCigar.getCigarElements)).moveLeft(1)
[WARNING]                                        ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichCigarSuite.scala:37: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     assert(newCigar2.cigar.getReadLength == read.samtoolsCigar.getReadLength)
[WARNING]                                             ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichCigarSuite.scala:49: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     val newCigar = RichCigar(new Cigar(read.samtoolsCigar.getCigarElements)).moveLeft(1)
[WARNING]                                        ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichCigarSuite.scala:52: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     assert(newCigar2.cigar.getReadLength == read.samtoolsCigar.getReadLength)
[WARNING]                                             ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichCigarSuite.scala:64: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     val newCigar = RichCigar(new Cigar(read.samtoolsCigar.getCigarElements)).moveLeft(1)
[WARNING]                                        ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichCigarSuite.scala:66: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     assert(newCigar.cigar.getReadLength == read.samtoolsCigar.getReadLength)
[WARNING]                                            ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichCigarSuite.scala:78: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     val newCigar = RichCigar(new Cigar(read.samtoolsCigar.getCigarElements)).moveLeft(1)
[WARNING]                                        ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/rich/RichCigarSuite.scala:80: warning: method recordToRichRecord in object RichAlignment is deprecated: Use explicit conversion wherever possible in new development.
[WARNING]     assert(newCigar.cigar.getReadLength == read.samtoolsCigar.getReadLength)
[WARNING]                                            ^
[WARNING] 127 warnings found
[INFO] prepare-compile in 0 s
[INFO] compile in 33 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-core-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-core-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-core-spark2_2.11 ---
Discovery starting.
Discovery completed in 2 seconds, 550 milliseconds.
Run starting. Expected test count is: 1175
RepairPartitionsSuite:
- don't pull from the first partition
- properly handle pulling from an empty iterator
- gets a single read from the partition if there are no other reads in the pair
- gets all the reads from a pair from the start of a partition
- properly handle dropping from an empty iterator
- don't drop from the first partition
- drop a single read from the partition if there are no other reads in the pair
- drops all the reads from a pair from the start of a partition
- only append to the first partition
- drop a single read from the partition and append read when in the middle
- drop reads from the start and don't append when in the last partition
- can't have more records than number of partitions
- unroll array for broadcast
2019-12-01 13:24:34 WARN  Utils:66 - Your hostname, amp-jenkins-staging-worker-02 resolves to a loopback address: 127.0.1.1; using 192.168.10.32 instead (on interface eno1)
2019-12-01 13:24:34 WARN  Utils:66 - Set SPARK_LOCAL_IP if you need to bind to another address
2019-12-01 13:24:35 WARN  NativeCodeLoader:62 - Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
- move pairs around an rdd
FlagStatSuite:
- Standard FlagStat test
ModPartitionerSuite:
- report number of partitions correctly
- partition a number that is lower than the number of partitions and positive
- partition a number that is greater than the number of partitions and positive
- partition a number that is lower than the number of partitions and negative
- partition a number that is greater than the number of partitions and negative
- fire an exception if input is not an integer
TwoBitFileSuite:
- correctly read sequence from .2bit file
- correctly return masked sequences from .2bit file
- correctly return Ns from .2bit file
- correctly calculates sequence dictionary
NonoverlappingRegionsSuite:
- alternating returns an alternating seq of items
- Single region returns itself
- Two adjacent regions will be merged
- Nonoverlapping regions will all be returned
- Many overlapping regions will all be merged
- ADAMRecords return proper references
ReferencePositionSuite:
- create reference position from mapped read
- create reference position from variant
- create reference position from genotype
- create reference position from variant starting at vcf 0
- create reference position from genotype starting at vcf 0
ConsensusGeneratorFromReadsSuite:
- checking search for consensus list for artificial reads
FragmentConverterSuite:
- build a fragment collector and convert to a read
- if a fragment isn't associated with a contig, don't get a fragment collector
- convert an rdd of discontinuous fragments, all from the same contig
- convert an rdd of contiguous fragments, all from the same contig
- convert an rdd of varied fragments from multiple contigs
FileMergerSuite:
- cannot write both empty gzip block and cram eof
- buffer size must be non-negative
RichAlignmentSuite:
- Unclipped Start
- Unclipped End
- tags contains optional fields
- read overlap unmapped read
- read overlap reference position
- read overlap same position different contig
SingleReadBucketSuite:
- convert unmapped pair to fragment
- convert proper pair to fragment
- convert read pair to fragment with first of pair chimeric read
RecalibrationTableSuite:
- look up quality scores in table
FlankSlicesSuite:
- don't put flanks on non-adjacent slices
- put flanks on adjacent slices
InterleavedFastqInputFormatSuite:
- interleaved FASTQ hadoop reader: interleaved_fastq_sample1.ifq->interleaved_fastq_sample1.ifq.output
- interleaved FASTQ hadoop reader: interleaved_fastq_sample2.ifq->interleaved_fastq_sample2.ifq.output
- interleaved FASTQ hadoop reader: interleaved_fastq_sample3.ifq->interleaved_fastq_sample3.ifq.output
- interleaved FASTQ hadoop reader: interleaved_fastq_sample4.ifq->interleaved_fastq_sample4.ifq.output
- interleaved FASTQ hadoop reader: interleaved_fastq_sample5.ifq->interleaved_fastq_sample5.ifq.output
TreeRegionJoinSuite:
- run a join between data on a single contig
ReferenceRegionSuite:
- cannot create an empty predicate
- parse empty string throws IllegalArgumentException
- parse contigName only string into reference regions
- parse to end strings into reference regions
- parse string into reference regions
- contains(: ReferenceRegion)
- contains(: ReferencePosition)
- merge
- overlaps and covers
- overlapsBy and coversBy
- distance(: ReferenceRegion)
- distance(: ReferencePosition)
- unstrandedDistance
- subtract fails on non-overlapping and non-covering regions
- subtract
- create region from unmapped read fails
- create region from read with null alignment positions fails
- create stranded region from unmapped read fails
- create stranded region from read with null alignment positions fails
- create stranded region from read with null alignment strand fails
- create stranded region from read on forward strand
- create stranded region from read on reverse strand
- create region from mapped read contains read start and end
- validate that adjacent regions can be merged
- validate that non-adjacent regions cannot be merged
- validate that nearby regions can be merged
- validate that non-nearby regions cannot be merged
- compute convex hull of two sets
- region name is sanitized when creating region from read
- intersection fails on non-overlapping regions
- intersection fails when minOverlap is not met
- compute intersection
- overlap tests for oriented reference region
- check the width of a reference region
- make a reference region for a variant or genotype
- make a reference region for a variant or genotype starting at VCF 0
- uniformly pad a reference region
- uniformly pad a reference region into negative coordinate space, ensure non negative start
- unevenly pad a reference region
- unevenly pad a reference region into negative coordinate space, ensure non negative start
- can build an open ended reference region
- can build an open ended reference region with strand
- can build a reference region with an open start position
- can build a reference region with an open start position with strand
- can build a reference region that covers the entirety of a contig
- can build a reference region that covers the entirety of a contig with strand
- convert a genotype and then get the reference region
- create region from feature with null alignment positions fails
- create stranded region from feature with null alignment positions fails
- create stranded region from feature with null alignment strand fails
- create stranded region from feature on forward strand
- create stranded region from feature on reverse strand
CoverageDatasetSuite:
- correctly saves coverage
- can read a bed file to coverage
- correctly filters coverage with predicate
- keeps sample metadata
- can read a bed file with multiple samples to coverage
- correctly flatmaps coverage without aggregated bins
- correctly flatmaps coverage with aggregated bins
- collapses coverage records in one partition
- approximately collapses coverage records in multiple partitions
2019-12-01 13:24:55 WARN  DatasetBoundSliceDataset:190 - Saving directly as Parquet from SQL. Options other than compression codec are ignored.
- transform coverage to slice genomic dataset
- transform coverage to feature genomic dataset
2019-12-01 13:24:57 WARN  Utils:66 - Truncated the string representation of a plan since it was too large. This behavior can be adjusted by setting 'spark.debug.maxToStringFields' in SparkEnv.conf.
- transform coverage to fragment genomic dataset
- transform coverage to read genomic dataset
- transform coverage to genotype genomic dataset
- transform coverage to variant genomic dataset
- transform coverage to variant context genomic dataset
- copy coverage rdd
- copy coverage dataset
- copy coverage rdd without sequence dictionary
- copy coverage dataset without sequence dictionary
- transform dataset via java API
RecalibratorSuite:
- don't replace quality if quality was null
- if no covariates, return alignment
- skip recalibration if base is below quality threshold
- recalibrate changed bases above quality threshold
SliceDatasetSuite:
- create a new slice genomic dataset
- create a new slice genomic dataset with sequence dictionary
- merge slices into a sequence genomic dataset
- save as parquet
- round trip as parquet
- save as fasta
- save as single file fasta
- convert slices to reads
- convert slices to sequences
GenotypeDatasetSuite:
- union two genotype genomic datasets together
- round trip to parquet
- round trip to partitioned parquet
- use broadcast join to pull down genotypes mapped to targets
- use right outer broadcast join to pull down genotypes mapped to targets
- use shuffle join to pull down genotypes mapped to targets
- use right outer shuffle join to pull down genotypes mapped to targets
- use left outer shuffle join to pull down genotypes mapped to targets
- use full outer shuffle join to pull down genotypes mapped to targets
- use shuffle join with group by to pull down genotypes mapped to targets
- use right outer shuffle join with group by to pull down genotypes mapped to targets
- convert back to variant contexts
- load parquet to sql, save, re-read from avro
2019-12-01 13:25:24 WARN  DatasetBoundSliceDataset:190 - Saving directly as Parquet from SQL. Options other than compression codec are ignored.
- transform genotypes to slice genomic dataset
- transform genotypes to coverage genomic dataset
- transform genotypes to feature genomic dataset
- transform genotypes to fragment genomic dataset
- transform genotypes to read genomic dataset
- transform genotypes to variant genomic dataset
- transform genotypes to variant context genomic dataset
- loading genotypes then converting to variants yields same output as loading variants
- filter RDD bound genotypes to genotype filters passed
- filter dataset bound genotypes to genotype filters passed
- filter RDD bound genotypes by genotype quality
- filter dataset bound genotypes by genotype quality
- filter RDD bound genotypes by read depth
- filter dataset bound genotypes by read depth
- filter RDD bound genotypes by alternate read depth
- filter dataset bound genotypes by alternate read depth
- filter RDD bound genotypes by reference read depth
- filter dataset bound genotypes by reference read depth
- filter RDD bound genotypes by sample
- filter dataset bound genotypes by sample
- filter RDD bound genotypes by samples
- filter dataset bound genotypes by samples
- filter RDD bound no call genotypes
- filter dataset no call genotypes
- round trip gVCF END attribute without nested variant annotations rdd bound
- round trip gVCF END attribute without nested variant annotations dataset bound
- round trip gVCF END attribute with nested variant annotations rdd bound
- round trip gVCF END attribute with nested variant annotations dataset bound
- transform dataset via java API
FragmentDatasetSuite:
- don't lose any reads when piping interleaved fastq to sam
- don't lose any reads when piping tab5 to sam
- don't lose any reads when piping tab6 to sam
- use broadcast join to pull down fragments mapped to targets
- use right outer broadcast join to pull down fragments mapped to targets
- use shuffle join to pull down fragments mapped to targets
- use right outer shuffle join to pull down fragments mapped to targets
- use left outer shuffle join to pull down fragments mapped to targets
- use full outer shuffle join to pull down fragments mapped to targets
- use shuffle join with group by to pull down fragments mapped to targets
- use right outer shuffle join with group by to pull down fragments mapped to targets
- bin quality scores in fragments
- union two genomic datasets of fragments together
- load parquet to sql, save, re-read from avro
- transform fragments to slice genomic dataset
- transform fragments to coverage genomic dataset
- transform fragments to feature genomic dataset
- transform fragments to read genomic dataset
- transform fragments to genotype genomic dataset
- transform fragments to variant genomic dataset
- transform fragments to variant context genomic dataset
- paired read names with index sequences in read names can group into fragments
- interleaved paired read names with index sequences in read names can group into fragments
- interleaved paired read names with index sequences in read names as fragments
- transform dataset via java API
- dataset and rdd conversion to alignments are equivalent
SingleFastqInputFormatSuite:
- FASTQ hadoop reader: fastq_sample1.fq->single_fastq_sample1.fq.output
- FASTQ hadoop reader: fastq_sample2.fq->single_fastq_sample2.fq.output
- FASTQ hadoop reader: fastq_sample3.fq->single_fastq_sample3.fq.output
- FASTQ hadoop reader: fastq_sample4.fq->single_fastq_sample4.fq.output
VariantContextDatasetSuite:
- load a gvcf with a missing info field set to .
- union two variant context genomic datasets together
- can write, then read in .vcf file
- can write as a single file via simple saveAsVcf method, then read in .vcf file
- can write as a single file via full saveAsVcf method, then read in .vcf file
- transform a vcf file with bad header
- read a vcf file with multi-allelic variants to split
- support VCFs with +Inf/-Inf float values
- support VCFs with `nan` instead of `NaN` float values
- don't lose any variants when piping as VCF
- pipe works with empty partitions
- don't lose any non-default VCF header lines or attributes when piping as VCF
- save a file sorted by contig index
- save a lexicographically sorted file
- save a multiallelic gvcf !!! IGNORED !!!
- test metadata
- save sharded bgzip vcf
- save bgzip vcf as single file
- can't save file with non-vcf extension
- transform variant contexts to slice genomic dataset
- transform variant contexts to coverage genomic dataset
- transform variant contexts to feature genomic dataset
- transform variant contexts to fragment genomic dataset
- transform variant contexts to read genomic dataset
- transform variant contexts to genotype genomic dataset
- transform variant contexts to variant genomic dataset
- save and reload from partitioned parquet
- transform dataset via java API
ConsensusSuite:
- test the insertion of a consensus insertion into a reference
- test the insertion of a consensus deletion into a reference
- inserting empty consensus returns the reference
SequenceDatasetSuite:
- create a new sequence genomic dataset
- create a new sequence genomic dataset with sequence dictionary
- save as parquet
- round trip as parquet
- save as fasta
- save as single file fasta
- convert sequences to reads
- convert sequences to slices
- slice sequences to a maximum length
- slice sequences shorter than maximum length
- filter sequences by overlapping region
- filter sequences failing to overlap region
- filter sequences by overlapping regions
- filter sequences failing to overlap regions
- slice sequences overlapping a smaller region
- slice sequences overlapping a larger region
- slice sequences failing to overlap a region
- slice sequences overlapping smaller regions
- slice sequences overlapping larger regions
- slice sequences failing to overlap regions
AttributeUtilsSuite:
- parseTags returns a reasonable set of tagStrings
- parseTags works with NumericSequence tagType
- empty string is parsed as zero tagStrings
- incorrectly formatted tag throws an exception
- string tag with a ':' in it is correctly parsed
- oq string tag with many ':' in it is correctly parsed
- oq string tag with a ',' in it is correctly parsed
- if a tag is an array but doesn't define it's format, throw
MarkDuplicatesSuite:
- single read
- reads at different positions
- reads at the same position
- reads at the same position with clipping
- reads on reverse strand
- unmapped reads
- read pairs
- read pairs with fragments
- quality scores
- read pairs that cross chromosomes
- single fragment
- fragments at different positions
- fragments at the same position
- fragments at the same position with clipping
- fragments on reverse strand
- unmapped fragments
- read pairs as fragments
- read pairs with fragments as fragments
- chimeric fragments
- inverse pairs
- supplemental reads
TranscriptEffectConverterSuite:
- parse empty transcript effect
- parse empty transcript effect strict validation stringency
- parse invalid transcript effect
- parse invalid transcript effect strict validation stringency
- parse transcript effect
- parse empty list VCF ANN attribute
- parse empty list VCF ANN attribute strict validation stringency
- parse empty string VCF ANN attribute
- parse empty string VCF ANN attribute strict validation stringency
- parse invalid VCF ANN attribute
- parse invalid VCF ANN attribute strict validation stringency
- parse VCF ANN attribute with one transcript effect
- parse VCF ANN attribute with multiple transcript effects
- convert to transcript effect from null VCF ANN attribute in variant context
- convert to transcript effect from empty list VCF ANN attribute in variant context
- convert to transcript effect from empty list VCF ANN attribute in variant context strict validation stringency
- convert to transcript effect from empty string VCF ANN attribute in variant context
- convert to transcript effect from empty string VCF ANN attribute in variant context strict validation stringency
- convert to transcript effect from invalid VCF ANN attribute in variant context
- convert to transcript effect from invalid VCF ANN attribute in variant context strict validation stringency
2019-12-01 13:26:50 WARN  TranscriptEffectConverter$:190 - Could not convert VCF INFO reserved key ANN value to TranscriptEffect, caught java.lang.NumberFormatException: For input string: "not a number".
- convert to transcript effect from VCF ANN attribute with invalid number in variant context lenient validation stringency
2019-12-01 13:26:50 WARN  TranscriptEffectConverter$:190 - Could not convert VCF INFO reserved key ANN value to TranscriptEffect, caught java.lang.NumberFormatException: For input string: "not a number".
- convert to transcript effect from VCF ANN attribute with invalid fraction in variant context lenient validation stringency
- convert to transcript effect from VCF ANN attribute with invalid number in variant context strict validation stringency
- convert to transcript effect from VCF ANN attribute with invalid fraction in variant context strict validation stringency
- convert to transcript effect from VCF ANN attribute in variant context different alt allele
- convert to transcript effect from VCF ANN attribute in variant context same alt allele
- convert to transcript effect from VCF ANN attribute in variant context multiple effects same alt allele
- convert transcript effect to VCF ANN attribute value
- convert transcript effect with null fields to VCF ANN attribute value
2019-12-01 13:26:50 WARN  TranscriptEffectConverter$:190 - Incorrect fractional value ?/2, missing numerator
- convert transcript effect with incorrect fractional value to VCF ANN attribute value
IndelRealignmentTargetSuite:
- checking simple realignment target
- creating simple target from read with deletion
- creating simple target from read with insertion
- joining simple realignment targets on same chr
- joining simple realignment targets on different chr throws exception
- creating targets from three intersecting reads, same indel
- creating targets from three intersecting reads, two different indel
- creating targets from two disjoint reads
- creating targets for artificial reads: one-by-one
- creating targets for artificial reads: all-at-once (merged)
- creating indel targets for mason reads
- additional indel targets taken from consensus generator
NormalizationUtilsSuite:
- cannot move an indel left if there are no bases to it's left
- move a simple indel to farthest position left until bases run out
- move a simple indel to farthest position left, past length of indel
- cannot move a left normalized indel in a short tandem repeat
- move an indel in a short tandem repeat
- move an indel in a short tandem repeat of more than 2 bases, where shift is not an integer multiple of repeated sequence length
- moving a simple read with single deletion that cannot shift
- shift an indel left by 0 in a cigar
- shift an indel left by 1 in a cigar
- do not left align a complex read which is already left aligned
ReadGroupDictionarySuite:
- simple conversion to and from sam read group
- sample name must be set
- simple equality checks
- get samples from read group dictionary
- empty read group is empty
- merging a dictionary with itself should work
- round trip a record with all attributes set
RightOuterTreeRegionJoinSuite:
- Ensure same reference regions get passed together
- Overlapping reference regions
InnerShuffleRegionJoinSuite:
- Overlapping reference regions
- Multiple reference regions do not throw exception
FeatureDatasetSuite:
- round trip GTF format
- save GTF as GFF3 format
- save GTF as BED format
- save GTF as IntervalList format
- save GTF as NarrowPeak format
- save GFF3 as GTF format
- save GFF3 as BED format
- save GFF3 as IntervalList format
- save GFF3 as NarrowPeak format
- round trip GFF3 format
- ignore FASTA sequence in GFF3 file
- save BED as GTF format
- save BED as GFF3 format
- save BED as IntervalList format
- save BED as NarrowPeak format
- round trip BED6 format
- keeps sample metadata
- round trip BED12 format
- save to UCSC BED format
- save IntervalList as GTF format
- save IntervalList as GFF3 format
- save IntervalList as BED format
- save IntervalList as IntervalList format
- save IntervalList as NarrowPeak format
- round trip IntervalList format
- save NarrowPeak as GTF format
- save NarrowPeak as GFF3 format
- save NarrowPeak as BED format
- save NarrowPeak as IntervalList format
- save NarrowPeak as NarrowPeak format
- round trip NarrowPeak format
- sort by reference
- sort by reference and feature fields
- sort gene features by reference and gene structure
- sort transcript features by reference and gene structure
- sort exon features by reference and gene structure
- sort intron features by reference and gene structure
- correctly flatmaps CoverageDataset from FeatureDataset
- use broadcast join to pull down features mapped to targets
- use right outer broadcast join to pull down features mapped to targets
- use shuffle join to pull down features mapped to targets
- use right outer shuffle join to pull down features mapped to targets
- use left outer shuffle join to pull down features mapped to targets
- use full outer shuffle join to pull down features mapped to targets
- use shuffle join with group by to pull down features mapped to targets
- use right outer shuffle join with group by to pull down features mapped to targets
- union two feature rdds together
- obtain sequence dictionary contig lengths from header in IntervalList format
- don't lose any features when piping as BED format
- don't lose any features when piping as GTF format
- don't lose any features when piping as GFF3 format
- don't lose any features when piping as NarrowPeak format
- load parquet to sql, save, re-read from avro
- load partitioned parquet to sql, save, re-read from avro
2019-12-01 13:27:26 WARN  DatasetBoundSliceDataset:190 - Saving directly as Parquet from SQL. Options other than compression codec are ignored.
- transform features to slice genomic dataset
- transform features to coverage genomic dataset
- transform features to fragment genomic dataset
- transform features to read genomic dataset
- transform features to genotype genomic dataset
- transform features to variant genomic dataset
- transform features to variant context genomic dataset
- filter RDD bound features by feature type
- filter dataset bound features by feature type
- filter RDD bound features by feature types
- filter dataset bound features by feature types
- filter RDD bound features by gene
- filter dataset bound features by gene
- filter RDD bound features by genes
- filter dataset bound features by genes
- filter RDD bound features by transcript
- filter dataset bound features by transcript
- filter RDD bound features by transcripts
- filter dataset bound features by transcripts
- filter RDD bound features by exon
- filter dataset bound features by exon
- filter RDD bound features by exons
- filter dataset bound features by exons
- filter RDD bound features by score
- filter dataset bound features by score
- filter RDD bound features by parent
- filter dataset bound features by parent
- filter RDD bound features by parents
- filter dataset bound features by parents
- filter RDD bound features by attribute
- filter dataset bound features by attribute
- transform dataset via java API
AlphabetSuite:
- test size of a case-sensitive alphabet
- test apply of a case-sensitive alphabet
- test reverse complement of a case-sensitive alphabet
- test exact reverse complement of a case-sensitive alphabet
- test size of a case-insensitive alphabet
- test apply of a case-insensitive alphabet
- test reverse complement of a case-insensitive alphabet
- test exact reverse complement of a case-insensitive alphabet
- DNA alphabet
- map unknown bases to N
SortedGenomicDatasetSuite:
- testing that partition and sort provide correct outputs
- testing copartition maintains or adds sort
- testing that we don't drop any data on the right side even though it doesn't map to a partition on the left
- testing that sorted shuffleRegionJoin matches unsorted
- testing that sorted fullOuterShuffleRegionJoin matches unsorted
- testing that sorted rightOuterShuffleRegionJoin matches unsorted
- testing that sorted leftOuterShuffleRegionJoin matches unsorted
- testing that we can persist the sorted knowledge
VariantContextConverterSuite:
- Convert htsjdk site-only SNV to ADAM
- Convert somatic htsjdk site-only SNV to ADAM
- Convert htsjdk site-only CNV to ADAM
- Convert htsjdk SNV w/ genotypes w/ phase information to ADAM
- Convert htsjdk SNV with different variant filters to ADAM
- Convert htsjdk SNV with different genotype filters to ADAM
- Convert ADAM site-only SNV to htsjdk
- Convert ADAM SNV w/ genotypes to htsjdk
- Convert ADAM SNV w/ genotypes but bad SB to htsjdk with strict validation
2019-12-01 13:27:46 WARN  VariantContextConverter:2300 - Applying annotation extraction function <function2> to {"variant": {"referenceName": "1", "start": 0, "end": 1, "names": [], "splitFromMultiAllelic": false, "referenceAllele": "A", "alternateAllele": "T", "quality": null, "filtersApplied": null, "filtersPassed": null, "filtersFailed": [], "annotation": null}, "referenceName": null, "start": null, "end": null, "variantCallingAnnotations": {"filtersApplied": null, "filtersPassed": null, "filtersFailed": [], "downsampled": null, "baseQRankSum": null, "fisherStrandBiasPValue": 3.0, "rmsMapQ": 0.0, "mapq0Reads": 5, "mqRankSum": null, "readPositionRankSum": null, "genotypePriors": [], "genotypePosteriors": [], "vqslod": null, "culprit": null, "attributes": {}}, "sampleId": "NA12878", "sampleDescription": null, "processingDescription": null, "alleles": ["REF", "ALT"], "expectedAlleleDosage": null, "referenceReadDepth": null, "alternateReadDepth": null, "readDepth": null, "minReadDepth": null, "genotypeQuality": null, "genotypeLikelihoods": [], "nonReferenceLikelihoods": [], "strandBiasComponents": [0, 2], "splitFromMultiAllelic": false, "phased": false, "phaseSetId": null, "phaseQuality": null} failed with java.lang.IllegalArgumentException: requirement failed: Illegal strand bias components length. Must be empty or 4. In:
{"variant": {"referenceName": "1", "start": 0, "end": 1, "names": [], "splitFromMultiAllelic": false, "referenceAllele": "A", "alternateAllele": "T", "quality": null, "filtersApplied": null, "filtersPassed": null, "filtersFailed": [], "annotation": null}, "referenceName": null, "start": null, "end": null, "variantCallingAnnotations": {"filtersApplied": null, "filtersPassed": null, "filtersFailed": [], "downsampled": null, "baseQRankSum": null, "fisherStrandBiasPValue": 3.0, "rmsMapQ": 0.0, "mapq0Reads": 5, "mqRankSum": null, "readPositionRankSum": null, "genotypePriors": [], "genotypePosteriors": [], "vqslod": null, "culprit": null, "attributes": {}}, "sampleId": "NA12878", "sampleDescription": null, "processingDescription": null, "alleles": ["REF", "ALT"], "expectedAlleleDosage": null, "referenceReadDepth": null, "alternateReadDepth": null, "readDepth": null, "minReadDepth": null, "genotypeQuality": null, "genotypeLikelihoods": [], "nonReferenceLikelihoods": [], "strandBiasComponents": [0, 2], "splitFromMultiAllelic": false, "phased": false, "phaseSetId": null, "phaseQuality": null}.
- Convert ADAM SNV w/ genotypes but bad SB to htsjdk with lenient validation
- Convert htsjdk multi-allelic sites-only SNVs to ADAM
- Convert htsjdk multi-allelic SNVs to ADAM and back to htsjdk
- Convert gVCF reference records to ADAM
- Convert htsjdk variant context with no IDs to ADAM
- Convert htsjdk variant context with one ID to ADAM
- Convert htsjdk variant context with multiple IDs to ADAM
- Convert ADAM variant context with no names to htsjdk
- Convert ADAM variant context with one name to htsjdk
- Convert ADAM variant context with multiple names to htsjdk
- Convert ADAM variant context with null filters applied to htsjdk
- Convert ADAM variant context with no filters applied to htsjdk
- Convert ADAM variant context with passing filters to htsjdk
- Convert ADAM variant context with failing filters to htsjdk
- no phasing set going htsjdk->adam
- phased but no phase set info going htsjdk->adam
- set phase set and extract going htsjdk->adam
- no allelic depth going htsjdk->adam
- set allelic depth going htsjdk->adam
- no gt read depth going htsjdk->adam
- extract gt read depth going htsjdk->adam
- no min gt read depth going htsjdk->adam
- extract min gt read depth going htsjdk->adam
- no genotype quality going htsjdk->adam
- extract genotype quality going htsjdk->adam
- no phred likelihood going htsjdk->adam
- extract phred likelihoods going htsjdk->adam
- no strand bias info going htsjdk->adam
- extract strand bias info going htsjdk->adam
- no filters going htsjdk->adam
- filters passed going htsjdk->adam
- extract single filter going htsjdk->adam
- extract multiple filters going htsjdk->adam
- no fisher strand bias going htsjdk->adam
- extract fisher strand bias going htsjdk->adam
- no rms mapping quality going htsjdk->adam
- extract rms mapping quality going htsjdk->adam
- no mq0 going htsjdk->adam
- extract mq0 going htsjdk->adam
- no gt read depth going adam->htsjdk
- extract gt read depth going adam->htsjdk
- throw iae if missing one component of gt read depth going adam->htsjdk
- no depth going adam->htsjdk
- extract depth going adam->htsjdk
- no min depth going adam->htsjdk
- extract min depth going adam->htsjdk
- no quality going adam->htsjdk
- extract quality going adam->htsjdk
- no genotype likelihoods going adam->htsjdk
- extract genotype likelihoods going adam->htsjdk
- no strand bias going adam->htsjdk
- malformed strand bias going adam->htsjdk
- extract strand bias going adam->htsjdk
- no phasing info going adam->htsjdk
- unphased going adam->htsjdk
- phased but no ps/pq going adam->htsjdk
- phased but no pq going adam->htsjdk
- phased but no ps going adam->htsjdk
- phased going adam->htsjdk
- no filter info going adam->htsjdk
- if filters applied, must set passed/failed going adam->htsjdk
- filters passed going adam->htsjdk
- if filters failed, must set filters failed going adam->htsjdk
- single filter failed going adam->htsjdk
- multiple filters failed going adam->htsjdk
- no fisher strand bias going adam->htsjdk
- extract fisher strand bias going adam->htsjdk
- no rms mapping quality going adam->htsjdk
- extract rms mapping quality going adam->htsjdk
- no mapping quality 0 reads going adam->htsjdk
- extract mapping quality 0 reads going adam->htsjdk
- no names set going htsjdk->adam
- single name set going htsjdk->adam
- multiple names set going htsjdk->adam
- no quality going htsjdk->adam
- quality set going htsjdk->adam
- no filters applied going htsjdk->adam
- filters applied and passed going htsjdk->adam
- single filter applied and failed going htsjdk->adam
- multiple filters applied and failed going htsjdk->adam
- no names set adam->htsjdk
- set a single name adam->htsjdk
- set multiple names adam->htsjdk
- no qual set adam->htsjdk
- qual is set adam->htsjdk
- no filters applied adam->htsjdk
- null filters applied adam->htsjdk
- filters passed adam->htsjdk
- if filter failed, must have filters adam->htsjdk
- single filter failed adam->htsjdk
- multiple filters failed adam->htsjdk
- no ancestral allele set going htsjdk->adam
- ancestral allele set going htsjdk->adam
- no dbsnp membership set going htsjdk->adam
- dbsnp membership set going htsjdk->adam
- no hapmap2 membership set going htsjdk->adam
- hapmap2 membership set going htsjdk->adam
- no hapmap3 membership set going htsjdk->adam
- hapmap3 membership set going htsjdk->adam
- no validated set going htsjdk->adam
- validated set going htsjdk->adam
- no 1000G membership set going htsjdk->adam
- 1000G membership set going htsjdk->adam
- not somatic going htsjdk->adam
- somatic going htsjdk->adam
- no allele count going htsjdk->adam
- single allele count going htsjdk->adam
- multiple allele counts going htsjdk->adam
- no allele frequency going htsjdk->adam
- single allele frequency going htsjdk->adam
- single allele frequency is +Inf going htsjdk->adam
- single allele frequency is -Inf going htsjdk->adam
- multiple allele frequencies going htsjdk->adam
- no CIGAR going htsjdk->adam
- single CIGAR going htsjdk->adam
- multiple CIGARs going htsjdk->adam
- no read depth going htsjdk->adam
- single read depth going htsjdk->adam
- multiple read depths going htsjdk->adam
- no forward read depth going htsjdk->adam
- single forward read depth going htsjdk->adam
- multiple forward read depths going htsjdk->adam
- no reverse read depth going htsjdk->adam
- single reverse read depth going htsjdk->adam
- multiple reverse read depths going htsjdk->adam
- no ancestral allele set adam->htsjdk
- ancestral allele set adam->htsjdk
- no dbsnp membership set adam->htsjdk
- dbsnp membership set adam->htsjdk
- no hapmap2 membership set adam->htsjdk
- hapmap2 membership set adam->htsjdk
- no hapmap3 membership set adam->htsjdk
- hapmap3 membership set adam->htsjdk
- no validated set adam->htsjdk
- validated set adam->htsjdk
- no 1000G membership set adam->htsjdk
- 1000G membership set adam->htsjdk
- no allele count set adam->htsjdk
- allele count set adam->htsjdk
- no allele frequency set adam->htsjdk
- allele frequency set adam->htsjdk
- no cigar set adam->htsjdk
- cigar set adam->htsjdk
- no read depth set adam->htsjdk
- read depth set adam->htsjdk
- read depth without reference read depth
- reference read depth without read depth
- no forward read depth set adam->htsjdk
- forward read depth set adam->htsjdk
- reference forward read depth without forward read depth
- forward read depth without reference forward read depth
- no reverse read depth set adam->htsjdk
- reverse read depth set adam->htsjdk
- reference reverse read depth without reverse read depth
- reverse read depth without reference reverse read depth
- VCF INFO attribute Number=0 Type=Flag adam->htsjdk
- VCF INFO attribute Number=4 Type=Flag adam->htsjdk unsupported, strict !!! IGNORED !!!
- VCF INFO attribute Number=1 Type=Integer adam->htsjdk
- VCF INFO attribute Number=4 Type=Integer adam->htsjdk
- VCF INFO attribute Number=A Type=Integer adam->htsjdk
- VCF INFO attribute Number=R Type=Integer adam->htsjdk
- VCF INFO attribute Number=R Type=String adam->htsjdk
- VCF INFO attribute Number=G Type=String adam->htsjdk not supported
- VCF INFO attribute Number=0 Type=Flag htsjdk->adam
- VCF INFO attribute Number=1 Type=Integer htsjdk->adam
- VCF INFO attribute Number=4 Type=Integer htsjdk->adam
- VCF INFO attribute Number=4 Type=Float htsjdk->adam
- VCF INFO attribute Number=A Type=Integer htsjdk->adam
- VCF INFO attribute Number=R Type=Integer htsjdk->adam
- VCF INFO attribute Number=R Type=String htsjdk->adam
- VCF INFO attribute Number=G Type=String htsjdk->adam not supported
- VCF FORMAT attribute Number=0 Type=Flag adam->htsjdk not supported
- VCF FORMAT attribute Number=1 Type=Integer adam->htsjdk
- VCF FORMAT attribute Number=4 Type=Integer adam->htsjdk
- VCF FORMAT attribute Number=A Type=Integer adam->htsjdk
- VCF FORMAT attribute Number=R Type=Integer adam->htsjdk
- VCF FORMAT attribute Number=R Type=String adam->htsjdk
- VCF FORMAT attribute Number=0 Type=Flag htsjdk->adam is not supported
- VCF FORMAT attribute Number=1 Type=Integer htsjdk->adam
- VCF FORMAT attribute Number=4 Type=Integer htsjdk->adam
- VCF FORMAT attribute Number=4 Type=Float htsjdk->adam
- VCF FORMAT attribute Number=A Type=Integer htsjdk->adam
- VCF FORMAT attribute Number=R Type=Integer htsjdk->adam
- VCF FORMAT attribute Number=R Type=String htsjdk->adam
- VCF FORMAT attribute Number=G Type=String htsjdk->adam
- respect end position for symbolic alts
FastqRecordConverterSuite:
- test read name suffix and index of pair must match
- test parseReadInFastq, read suffix removal
- test parseReadInFastq, read metadata removal
- test parseReadInFastq, read quality shorter than read length, padded with B
- test parseReadInFastq, read quality longer than read length 
- test parseReadInFastq, no read quality
- testing FastqRecordConverter.convertPair with valid input
- testing FastqRecordConverter.convertPair with 7-line invalid input
- testing FastqRecordConverter.convertPair with invalid input: first read length and qual don't match
- testing FastqRecordConverter.convertPair with invalid input: second read length and qual don't match
- testing FastqRecordConverter.convertFragment with valid input
- testing FastqRecordConverter.convertFragment with another valid input having /1, /2 suffixes
- testing FastqRecordConverter.convertFragment with invalid input: different read names
- testing FastqRecordConverter.convertRead with valid input
- testing FastqRecordConverter.convertRead with valid input: setFirstOfPair set to true
- testing FastqRecordConverter.convertRead with valid input: setSecondOfPair set to true
- testing FastqRecordConverter.convertRead with valid input: setFirstOfPair and setSecondOfPair both true
- testing FastqRecordConverter.convertRead with valid input, no qual, strict
- testing FastqRecordConverter.convertRead with valid input, no qual, not strict
AttributeSuite:
- test SAMTagAndValue parsing
- Attributes can be correctly re-encoded as text SAM tags
GFF3HeaderWriterSuite:
- write gff3 header pragma
BinQualitiesSuite:
- make a quality score bin
- can't have a quality score bin with negative score
- can't have a quality score bin with high score below low
- can't have a quality score bin with high score above 255
- can't have a quality score bin with score outside
- make a quality score bin from a string
- quality score bin must have exactly 3 elements
- quality score bin must be integers
- must define at least one bin
- build multiple bins
- rewrite quality scores for a read
- rewriting quality scores fails if bins overlap
- rewriting quality scores fails if base is out of bounds
- skip read if qualities are null
- rewrite a read
IndexedFastaFileSuite:
- correctly generates sequence dictionary from .dict file
- correctly gets sequence
- fails when fai index is not provided
2019-12-01 13:27:46 WARN  IndexedFastaFile:190 - Caught exception java.lang.NullPointerException when loading FASTA sequence dictionary. Using empty dictionary instead.
- passes when dict is not provided and ValidationStringency = LENIENT
SAMRecordConverterSuite:
- testing the fields in an Alignment obtained from a mapped samRecord conversion
- testing the fields in an Alignment obtained from an unmapped samRecord conversion
- '*' quality gets nulled out
- don't keep denormalized fields
ADAMContextSuite:
- ctr is accessible
- load from an empty directory
- sc.loadParquet should not fail on unmapped reads
- sc.loadParquet should not load a file without a type specified
- can read a small .SAM file
- can read a small .SAM file with a bad header with lenient validation
- loading a sam file with a bad header and strict stringency should fail
- can read a small .CRAM file
- can read a small .SAM with all attribute tag types
- can filter a .SAM file based on quality
- Can convert to phred
- Can convert from phred
- Can read a .gtf file
- Can read a .bed file
- Can read a BED 12 file
- Can read a .narrowPeak file
- Can read a .interval_list file
2019-12-01 13:27:51 WARN  VariantContextConverter:1662 - Saw invalid info field java.lang.IllegalArgumentException: Multivalued flags are not supported for INFO lines: INFO=<ID=ABADFLAG,Number=.,Type=Flag,Description="A no good, very bad flag.">. Ignoring...
2019-12-01 13:27:51 WARN  VariantContextConverter:2169 - Generating field extractor from header line INFO=<ID=ABADFLAG,Number=.,Type=Flag,Description="A no good, very bad flag."> failed: java.lang.IllegalArgumentException: Multivalue flags are not supported for INFO lines: INFO=<ID=ABADFLAG,Number=.,Type=Flag,Description="A no good, very bad flag.">
- can read a small .vcf file with a validation issue
- can read a small .vcf file
2019-12-01 13:27:51 WARN  VCFInputFormat:218 - file:/home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/2.11.12/test-classes/test.vcf.gz is not splittable, consider using block-compressed gzip (BGZF)
- can read a gzipped .vcf file
- can read a vcf file with an empty alt
- can read a BGZF gzipped .vcf file with .gz file extension
- can read a BGZF gzipped .vcf file with .bgz file extension
- can read a vcf file with a projection
- can read an uncompressed BCFv2.2 file !!! IGNORED !!!
- can read a BGZF compressed BCFv2.2 file !!! IGNORED !!!
- loadIndexedVcf with 1 ReferenceRegion
- loadIndexedVcf with multiple ReferenceRegions
- load block compressed interleaved fastq
- import records from interleaved FASTQ: 1
- import records from interleaved FASTQ: 2
- import records from interleaved FASTQ: 3
- import records from interleaved FASTQ: 4
- import block compressed single fastq
- import records from single ended FASTQ: 1
- import records from single ended FASTQ: 2
- import records from single ended FASTQ: 3
- import records from single ended FASTQ: 4
- filter on load using the filter2 API
- saveAsParquet with file path
- saveAsParquet with file path, block size, page size
- saveAsParquet with save args
- read a HLA fasta from GRCh38
- read a gzipped fasta file
- read a fasta file with comments, gaps, and translation stops
- loadIndexedBam with 1 ReferenceRegion
- loadIndexedBam with multiple ReferenceRegions
- loadIndexedBam with multiple ReferenceRegions and indexed bams
- loadIndexedBam with multiple ReferenceRegions and a directory of indexed bams
- loadIndexedBam should throw exception without an index file
- loadIndexedBam should work with indexed file with index naming format <filename>.bai
- loadIndexedBam glob should throw exception without an index file
- loadBam with a glob
- loadBam with a directory
- load vcf with a glob
- load vcf from a directory
- load gvcf which contains a multi-allelic row from a directory
- load and save gvcf which contains rows without likelihoods
- parse annotations for multi-allelic rows
- load parquet with globs
- bad glob should fail
- empty directory should fail
- can read a SnpEff-annotated .vcf file
- loadAlignments should not fail on single-end and paired-end fastq reads
- load queryname sorted sam as fragments
- load query grouped sam as fragments
- load paired fastq
- load paired fastq without cache
- load paired fastq as fragments
- load paired fastq as fragments without cache
- load HTSJDK sequence dictionary
- load Bedtools .genome file as sequence dictionary
- load Bedtools .genome.txt file as sequence dictionary
- load UCSC Genome Browser chromInfo.txt file as sequence dictionary
- load unrecognized file extension as sequence dictionary fails
- load BED features with Bedtools .genome file as sequence dictionary
- load BED features with Bedtools .genome file as sequence dictionary, no matching features
- convert program record
- load program record from sam file
- load alignments from data frame
- load features from data frame
- load fragments from data frame
- load genotypes from data frame with default header lines
- load genotypes from data frame with empty header lines
- load reads from data frame
- load sequences from data frame
- load slices from data frame
- load variant contexts from data frame with default header lines
- load variant contexts from data frame with empty header lines
- load variants from data frame with default header lines
- load variants from data frame with empty header lines
- load alignments with metadata from data frame
- load features with metadata from data frame
- load fragments with metadata from data frame
- load genotypes with metadata from data frame
- load variant contexts with metadata from data frame
- load variants with metadata from data frame
- read a fasta file with short sequences as sequences
- read a fasta file with long sequences as sequences
- read a fasta file with short sequences as slices
- read a fasta file with long sequences as slices
CycleCovariateSuite:
- compute covariates for an unpaired read on the negative strand
- compute covariates for a first-of-pair read on the negative strand
- compute covariates for a second-of-pair read on the negative strand
- compute covariates for an unpaired read on the positive strand
- compute covariates for a first-of-pair read on the positive strand
- compute covariates for a second-of-pair read on the positive strand
AlignmentConverterSuite:
- testing the fields in a converted ADAM Read
- converting a read with null quality is OK
- convert a read to fastq
- reverse complement reads when converting to fastq
- converting to fastq with unmapped reads where  read reverse complemented flag (Ox10) was NOT set
- converting to fastq with unmapped reads where reverse complemented flag (0x10) was set
- converting a fragment with no alignments should yield unaligned reads
- converting a fragment with alignments should restore the alignments
- read negative strand is propagated even when not mapped
ConsensusGeneratorFromKnownsSuite:
- no consensuses for empty target
- no consensuses for reads that don't overlap a target
- return a consensus for read overlapping a single target
RichCigarSuite:
- moving 2 bp from a deletion to a match operator
- moving 2 bp from a insertion to a match operator
- moving 1 base in a two element cigar
- move to start of read
- process right clipped cigar
- process left clipped cigar
- process cigar clipped on both ends
MDTaggingSuite:
- test adding MDTags over boundary
- test adding MDTags; reads span full contig
- test adding MDTags; reads start inside first fragment
- test adding MDTags; reads end inside last fragment
- test adding MDTags; reads start inside first fragment and end inside last fragment
- test adding MDTags; reads start and end in middle fragements
2019-12-01 13:28:40 WARN  BlockManager:66 - Putting block rdd_5_3 failed due to exception java.lang.Exception: Contig chr2 not found in reference map with keys: chr1.
2019-12-01 13:28:40 WARN  BlockManager:66 - Block rdd_5_3 could not be removed as it was not found on disk or in memory
2019-12-01 13:28:40 ERROR Executor:91 - Exception in task 3.0 in stage 2.0 (TID 11)
java.lang.Exception: Contig chr2 not found in reference map with keys: chr1
	at org.bdgenomics.adam.util.ReferenceContigMap$$anonfun$extract$1.apply(ReferenceContigMap.scala:63)
	at org.bdgenomics.adam.util.ReferenceContigMap$$anonfun$extract$1.apply(ReferenceContigMap.scala:63)
	at scala.collection.MapLike$class.getOrElse(MapLike.scala:128)
	at scala.collection.AbstractMap.getOrElse(Map.scala:59)
	at org.bdgenomics.adam.util.ReferenceContigMap.extract(ReferenceContigMap.scala:61)
	at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1$$anonfun$apply$2.apply(MDTagging.scala:76)
	at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1$$anonfun$apply$2.apply(MDTagging.scala:71)
	at scala.Option$WithFilter.map(Option.scala:207)
	at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1.apply(MDTagging.scala:71)
	at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1.apply(MDTagging.scala:69)
	at scala.collection.Iterator$$anon$11.next(Iterator.scala:410)
	at org.apache.spark.storage.memory.MemoryStore.putIterator(MemoryStore.scala:222)
	at org.apache.spark.storage.memory.MemoryStore.putIteratorAsValues(MemoryStore.scala:299)
	at org.apache.spark.storage.BlockManager$$anonfun$doPutIterator$1.apply(BlockManager.scala:1165)
	at org.apache.spark.storage.BlockManager$$anonfun$doPutIterator$1.apply(BlockManager.scala:1156)
	at org.apache.spark.storage.BlockManager.doPut(BlockManager.scala:1091)
	at org.apache.spark.storage.BlockManager.doPutIterator(BlockManager.scala:1156)
	at org.apache.spark.storage.BlockManager.getOrElseUpdate(BlockManager.scala:882)
	at org.apache.spark.rdd.RDD.getOrCompute(RDD.scala:335)
	at org.apache.spark.rdd.RDD.iterator(RDD.scala:286)
	at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90)
	at org.apache.spark.scheduler.Task.run(Task.scala:123)
	at org.apache.spark.executor.Executor$TaskRunner$$anonfun$10.apply(Executor.scala:408)
	at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1360)
	at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:414)
	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
	at java.lang.Thread.run(Thread.java:748)
2019-12-01 13:28:40 WARN  TaskSetManager:66 - Lost task 3.0 in stage 2.0 (TID 11, localhost, executor driver): java.lang.Exception: Contig chr2 not found in reference map with keys: chr1
	at org.bdgenomics.adam.util.ReferenceContigMap$$anonfun$extract$1.apply(ReferenceContigMap.scala:63)
	at org.bdgenomics.adam.util.ReferenceContigMap$$anonfun$extract$1.apply(ReferenceContigMap.scala:63)
	at scala.collection.MapLike$class.getOrElse(MapLike.scala:128)
	at scala.collection.AbstractMap.getOrElse(Map.scala:59)
	at org.bdgenomics.adam.util.ReferenceContigMap.extract(ReferenceContigMap.scala:61)
	at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1$$anonfun$apply$2.apply(MDTagging.scala:76)
	at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1$$anonfun$apply$2.apply(MDTagging.scala:71)
	at scala.Option$WithFilter.map(Option.scala:207)
	at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1.apply(MDTagging.scala:71)
	at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1.apply(MDTagging.scala:69)
	at scala.collection.Iterator$$anon$11.next(Iterator.scala:410)
	at org.apache.spark.storage.memory.MemoryStore.putIterator(MemoryStore.scala:222)
	at org.apache.spark.storage.memory.MemoryStore.putIteratorAsValues(MemoryStore.scala:299)
	at org.apache.spark.storage.BlockManager$$anonfun$doPutIterator$1.apply(BlockManager.scala:1165)
	at org.apache.spark.storage.BlockManager$$anonfun$doPutIterator$1.apply(BlockManager.scala:1156)
	at org.apache.spark.storage.BlockManager.doPut(BlockManager.scala:1091)
	at org.apache.spark.storage.BlockManager.doPutIterator(BlockManager.scala:1156)
	at org.apache.spark.storage.BlockManager.getOrElseUpdate(BlockManager.scala:882)
	at org.apache.spark.rdd.RDD.getOrCompute(RDD.scala:335)
	at org.apache.spark.rdd.RDD.iterator(RDD.scala:286)
	at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90)
	at org.apache.spark.scheduler.Task.run(Task.scala:123)
	at org.apache.spark.executor.Executor$TaskRunner$$anonfun$10.apply(Executor.scala:408)
	at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1360)
	at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:414)
	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
	at java.lang.Thread.run(Thread.java:748)

2019-12-01 13:28:40 ERROR TaskSetManager:70 - Task 3 in stage 2.0 failed 1 times; aborting job
- try realigning a read on a missing contig, stringency == STRICT
2019-12-01 13:28:40 WARN  MDTagging:190 - Caught exception when processing read chr2: java.lang.Exception: Contig chr2 not found in reference map with keys: chr1
- try realigning a read on a missing contig, stringency == LENIENT
FileExtensionsSuite:
- ends in gzip extension
- is a vcf extension
PhredUtilsSuite:
- convert low phred score to log and back
- convert high phred score to log and back
- convert overflowing phred score to log and back and clip
- convert negative zero log probability to phred and clip
- round trip log probabilities
ReadDatasetSuite:
- create a new read genomic dataset
- create a new read genomic dataset with sequence dictionary
- save as parquet
- round trip as parquet
- save as fastq
- save as single file fastq
- filter read genomic dataset by reference region
- broadcast region join reads and features
- shuffle region join reads and features
- convert reads to alignments
- convert reads to sequences
- convert reads to slices
AlignmentDatasetSuite:
- sorting reads
- unmapped reads go at the end when sorting
- coverage does not fail on unmapped reads
- computes coverage
- computes coverage with multiple samples
- merges adjacent records with equal coverage values
- sorting reads by reference index
- round trip from ADAM to SAM and back to ADAM produces equivalent Read values
- round trip with single CRAM file produces equivalent Read values
- round trip with sharded CRAM file produces equivalent Read values
- SAM conversion sets read mapped flag properly
- load long FASTQ reads
- load FASTQ with no bases
- convert malformed FASTQ (no quality scores) => SAM => well-formed FASTQ => SAM
- round trip from ADAM to FASTQ and back to ADAM produces equivalent Read values
- round trip from ADAM to paired-FASTQ and back to ADAM produces equivalent Read values
- writing a small file with tags should produce the expected result
- writing a small sorted file as SAM should produce the expected result
- writing unordered sam from unordered sam
- writing ordered sam from unordered sam
- write single sam file back
- write single bam file back
- saveAsParquet with save args, sequence dictionary, and read group dictionary
- load parquet to sql, save, re-read from avro
- load from sam, save as partitioned parquet, and re-read from partitioned parquet
- save as SAM format
- save as sorted SAM format
- save as BAM format
- save as sorted BAM format
- save as FASTQ format
- save as ADAM parquet format
- saveAsSam SAM format
- saveAsSam SAM format single file
- saveAsSam sorted SAM format single file
- saveAsSam BAM format
- saveAsSam BAM format single file
- saveAsSam sorted BAM format single file
- saveAsFastq
- saveAsFastq as single file
- saveAsFastq with original base qualities
- saveAsFastq sorted by read name
- saveAsFastq sorted by read name with original base qualities
2019-12-01 13:29:08 WARN  RDDBoundAlignmentDataset:190 - Found 20 read names that don't occur exactly twice:
	1x:	20

Samples:
	simread:1:237728409:true
	simread:1:195211965:false
	simread:1:163841413:false
	simread:1:231911906:false
	simread:1:26472783:false
	simread:1:165341382:true
	simread:1:240344442:true
	simread:1:50683371:false
	simread:1:240997787:true
	simread:1:14397233:false
	simread:1:207027738:true
	simread:1:20101800:true
	simread:1:101556378:false
	simread:1:37577445:false
	simread:1:189606653:true
	simread:1:5469106:true
	simread:1:186794283:true
	simread:1:89554252:false
	simread:1:153978724:false
	simread:1:169801933:true
- saveAsFastq paired FASTQ
2019-12-01 13:29:10 WARN  RDDBoundAlignmentDataset:190 - Found 20 read names that don't occur exactly twice:
	1x:	20

Samples:
	simread:1:237728409:true
	simread:1:195211965:false
	simread:1:163841413:false
	simread:1:231911906:false
	simread:1:26472783:false
	simread:1:165341382:true
	simread:1:240344442:true
	simread:1:50683371:false
	simread:1:240997787:true
	simread:1:14397233:false
	simread:1:207027738:true
	simread:1:20101800:true
	simread:1:101556378:false
	simread:1:37577445:false
	simread:1:189606653:true
	simread:1:5469106:true
	simread:1:186794283:true
	simread:1:89554252:false
	simread:1:153978724:false
	simread:1:169801933:true
- saveAsPairedFastq
2019-12-01 13:29:11 WARN  RDDBoundAlignmentDataset:190 - Found 20 read names that don't occur exactly twice:
	1x:	20

Samples:
	simread:1:237728409:true
	simread:1:195211965:false
	simread:1:163841413:false
	simread:1:231911906:false
	simread:1:26472783:false
	simread:1:165341382:true
	simread:1:240344442:true
	simread:1:50683371:false
	simread:1:240997787:true
	simread:1:14397233:false
	simread:1:207027738:true
	simread:1:20101800:true
	simread:1:101556378:false
	simread:1:37577445:false
	simread:1:189606653:true
	simread:1:5469106:true
	simread:1:186794283:true
	simread:1:89554252:false
	simread:1:153978724:false
	simread:1:169801933:true
- saveAsPairedFastq as single files
- don't lose any reads when piping as SAM
2019-12-01 13:29:22 WARN  OutFormatterRunner:190 - Piped command List(sleep, 10) timed out after 5 seconds.
2019-12-01 13:29:22 WARN  OutFormatterRunner:190 - Piped command List(sleep, 10) timed out after 5 seconds.
- lose all records when a command times out
- lose no records without a timeout
2019-12-01 13:29:43 WARN  OutFormatterRunner:190 - Piped command List(python, /tmp/adamTestMvnhgcACDR/spark-0716c220-18c8-4908-9720-a202b5b47adf/userFiles-a3891f13-974f-404e-bfd2-f45a2e6f2429/timeout.py) timed out after 5 seconds.
2019-12-01 13:29:43 WARN  OutFormatterRunner:190 - Piped command List(python, /tmp/adamTestMvnhgcACDR/spark-0716c220-18c8-4908-9720-a202b5b47adf/userFiles-a3891f13-974f-404e-bfd2-f45a2e6f2429/timeout.py) timed out after 5 seconds.
- lose some records when a command times out
- don't lose any reads when piping as SAM using java pipe
- don't lose any reads when piping as BAM
- don't lose any reads when piping fastq to sam
- can properly set environment variables inside of a pipe
- read vcf from alignment pipe !!! IGNORED !!!
- use broadcast join to pull down reads mapped to targets
- use broadcast join against to pull down reads mapped to targets
- use right outer broadcast join to pull down reads mapped to targets
- use right outer broadcast join against to pull down reads mapped to targets
- use shuffle join with feature spanning partitions
- use shuffle join to pull down reads mapped to targets
- use shuffle join with flankSize to pull down reads mapped close to targets
- use right outer shuffle join to pull down reads mapped to targets
- use left outer shuffle join to pull down reads mapped to targets
- use full outer shuffle join to pull down reads mapped to targets
- use shuffle join with group by to pull down reads mapped to targets
- use right outer shuffle join with group by to pull down reads mapped to targets
- cannot provide empty quality score bins
- cannot provide bins with a gap
- cannot provide overlapping bins
- binning quality scores in reads succeeds even if reads have no quality scores
- bin quality scores in reads
- union two read files together
- test k-mer counter
- test dataset based k-mer counter
- transform reads to slice genomic dataset
- transform reads to coverage genomic dataset
- transform reads to feature genomic dataset
- transform reads to fragment genomic dataset
- transform reads to genotype genomic dataset
loading /tmp/adamTestMvnhgcACDR/TempSuite3985550610983559529.adam as parquet into RDD...
loading /tmp/adamTestMvnhgcACDR/TempSuite3078297783586571336.adam as parquet into RDD...
- transform reads to variant genomic dataset
- cannot have a null processing step ID
- convert a processing description to htsjdk
- GenomicDataset.sort does not fail on unmapped reads
- GenomicDataset.sortLexicographically does not fail on unmapped reads
- left normalize indels
- running base recalibration with downsampling doesn't drop reads
- filter RDD bound alignments by MAPQ
- filter dataset bound alignments by MAPQ
- filter RDD bound unaligned alignments
- filter dataset bound unaligned alignments
- filter RDD bound unpaired alignments
- filter dataset bound unpaired alignments
- filter RDD bound duplicate alignments
- filter dataset bound duplicate alignments
- filter RDD bound alignments to primary alignments
- filter dataset bound alignments to primary alignments
- filter RDD bound alignments to read group
- filter dataset bound alignments to read group
- filter RDD bound alignments to read groups
- filter dataset bound alignments to read groups
- filter RDD bound alignments to sample
- filter dataset bound alignments to sample
- filter RDD bound alignments to samples
- filter dataset bound alignments to samples
- sort by read name
- transform dataset via java API
- convert alignments to reads
SmithWatermanSuite:
- gather max position from simple scoring matrix
- gather max position from irregular scoring matrix
- gather max position from irregular scoring matrix with deletions
- score simple alignment with constant gap
- score irregular scoring matrix
- score irregular scoring matrix with indel
- can unroll cigars correctly
- execute simple trackback
- execute trackback with indel
- run end to end smith waterman for simple reads
- run end to end smith waterman for short sequences with indel
- run end to end smith waterman for longer sequences with snp
- run end to end smith waterman for longer sequences with short indel
- run end to end smith waterman for shorter sequence in longer sequence
- run end to end smith waterman for shorter sequence in longer sequence, with indel
- smithWaterman - simple alignment
MdTagSuite:
- null md tag
- zero length md tag
- md tag with non-digit initial value
- md tag invalid base
- md tag, pure insertion
- md tag, pure insertion, test 2
- md tag pure insertion equality
- md tag equality and hashcode
- valid md tags
- get start of read with no mismatches or deletions
- get start of read with no mismatches, but with a deletion at the start
- get start of read with mismatches at the start
- get end of read with no mismatches or deletions
- check that mdtag and rich record return same end
- get end of read with no mismatches, but a deletion at end
- CIGAR with N operator
- CIGAR with multiple N operators
- CIGAR with P operators
- Get correct matches for mdtag with insertion
- Get correct matches for mdtag with mismatches and insertion
- Get correct matches for mdtag with insertion between mismatches
- Get correct matches for mdtag with intron between mismatches
- Get correct matches for mdtag with intron and deletion between mismatches
- Throw exception when number of deleted bases in mdtag disagrees with CIGAR
- Get correct matches for mdtag with mismatch, insertion and deletion
- Get correct matches for mdtag with mismatches, insertion and deletion
- Get correct matches for MDTag with mismatches and deletions
- Get correct matches base from MDTag and CIGAR with N
- get end of read with mismatches and a deletion at end
- get correct string out of mdtag with no mismatches
- get correct string out of mdtag with mismatches at start
- get correct string out of mdtag with deletion at end
- get correct string out of mdtag with mismatches at end
- get correct string out of complex mdtag
- check complex mdtag
- get gapped reference
- move a cigar alignment by two for a read
- rewrite alignment to all matches
- rewrite alignment to two mismatches followed by all matches
- rewrite alignment to include a deletion but otherwise all matches
- rewrite alignment to include an insertion at the start of the read but otherwise all matches
- create new md tag from read vs. reference, perfect match
- create new md tag from read vs. reference, perfect alignment match, 1 mismatch
- create new md tag from read vs. reference, alignment with deletion
- create new md tag from read vs. reference, alignment with insert
- handle '=' and 'X' operators
- CIGAR/MD tag mismatch should cause errors
GenomicDatasetSuite:
- processing a command that is the spark root directory should return an absolute path
- processing a command that is just a single word should do nothing
- processing a command should handle arguments that include spaces
- processing a command that is a single substitution should succeed
- processing a command that is multiple words should split the string
- process a command that is multiple words with a replacement
- process a command that is multiple words with multiple replacements
ParallelFileMergerSuite:
- cannot write both empty gzip block and cram eof
- buffer size must be non-negative
- get the size of several files
- block size must be positive and non-zero when trying to merge files
- must provide files to merge
- if two files are both below the block size, they should merge into one shard
- merge two files where one is greater than the block size
- merge a sharded sam file
- merge a sharded bam file
- merge a sharded cram file
- can't turn a negative index into a path
- generate a path from an index
IndelTableSuite:
- check for indels in a region with known indels
- check for indels in a contig that doesn't exist
- check for indels in a region without known indels
- build indel table from rdd of variants
SnpTableSuite:
- create an empty snp table
- create a snp table from variants on multiple contigs
- create a snp table from a larger set of variants
- perform lookups on multi-contig snp table
- perform lookups on larger snp table
RealignIndelsSuite:
- map reads to targets
- checking mapping to targets for artificial reads
- checking alternative consensus for artificial reads
- checking extraction of reference from reads
- checking realigned reads for artificial input
- checking realigned reads for artificial input with reference file
- checking realigned reads for artificial input using knowns
- checking realigned reads for artificial input using knowns and reads
- skip realigning reads if target is highly covered
- skip realignment if target is an insufficient LOD improvement
- realign reads to an insertion
- test mismatch quality scoring
- test mismatch quality scoring for no mismatches
- test mismatch quality scoring for offset
- test mismatch quality scoring with early exit
- test mismatch quality scoring after unpacking read
- we shouldn't try to realign a region with no target
- we shouldn't try to realign reads with no indel evidence
- test OP and OC tags
- realign a read with an insertion that goes off the end of the read
- if realigning a target doesn't improve the LOD, don't drop reads
- extract seq/qual from a read with no clipped bases
- extract seq/qual from a read with clipped bases at start
- extract seq/qual from a read with clipped bases at end
- if unclip is selected, don't drop base when extracting from a read with clipped bases
- get cigar and coordinates for read that spans indel, no clipped bases
- get cigar and coordinates for read that spans deletion, clipped bases at start
- get cigar and coordinates for read that falls wholly before insertion
- get cigar and coordinates for read that falls wholly after insertion
- get cigar and coordinates for read that falls wholly after deletion
- get cigar and coordinates for read that partially spans insertion, no clipped bases
- get cigar and coordinates for read that partially spans insertion, clipped bases at end
- get cigar and coordinates for read that partially spans insertion, clipped bases both ends
BaseQualityRecalibrationSuite:
- BQSR Test Input #1 w/ VCF Sites without caching
- BQSR Test Input #1 w/ VCF Sites with caching
- BQSR Test Input #1 w/ VCF Sites with serialized caching
DinucCovariateSuite:
- computing dinucleotide pairs for a single base sequence should return (N,N)
- compute dinucleotide pairs for a string of all valid bases
- compute dinucleotide pairs for a string with an N
- compute covariates for a read on the negative strand
- compute covariates for a read on the positive strand
SequenceDictionarySuite:
- Convert from sam sequence record and back
- Convert from SAM sequence dictionary file (with extra fields)
- merge into existing dictionary
- Convert from SAM sequence dictionary and back
- Can retrieve sequence by name
- SequenceDictionary's with same single element are equal
- SequenceDictionary's with same two elements are equals
- SequenceDictionary's with different elements are unequal
- SequenceDictionaries with same elements in different order are compatible
- isCompatible tests equality on overlap
- The addition + works correctly
- The append operation ++ works correctly
- ContainsRefName works correctly for different string types
- Apply on name works correctly for different String types
- convert from sam sequence record and back
- convert from sam sequence dictionary and back
- conversion to sam sequence dictionary has correct sort order
- load sequence dictionary from VCF file
- empty sequence dictionary must be empty
- test filter to reference name
- test filter to reference names
- test filter to reference name by function
GenomicPositionPartitionerSuite:
- partitions the UNMAPPED ReferencePosition into the top partition
- if we do not have a contig for a record, we throw an IAE
- partitioning into N pieces on M total sequence length, where N > M, results in M partitions
- correctly partitions a single dummy sequence into two pieces
- correctly counts cumulative lengths
- correctly partitions positions across two dummy sequences
- test that we can range partition ADAMRecords
- test that we can range partition ADAMRecords indexed by sample
- test that simple partitioning works okay on a reasonable set of ADAMRecords
- test indexed ReferencePosition partitioning works on a set of indexed ADAMRecords
CoverageSuite:
- Convert to coverage from valid Feature
- Convert to coverage from valid Feature with sampleId
- Convert to coverage from Feature with null/empty contigName fails with correct error
- Convert to coverage from Feature with no start/end position fails with correct error
- Convert to coverage from Feature with no score fails with correct error
InnerTreeRegionJoinSuite:
- Ensure same reference regions get passed together
- Overlapping reference regions
- Multiple reference regions do not throw exception
VariantDatasetSuite:
- union two variant genomic datasets together
- round trip to parquet
- save and reload from partitioned parquet
- use broadcast join to pull down variants mapped to targets
- use right outer broadcast join to pull down variants mapped to targets
- use shuffle join to pull down variants mapped to targets
- use right outer shuffle join to pull down variants mapped to targets
- use left outer shuffle join to pull down variants mapped to targets
- use full outer shuffle join to pull down variants mapped to targets
- use shuffle join with group by to pull down variants mapped to targets
- use right outer shuffle join with group by to pull down variants mapped to targets
- convert back to variant contexts
- load parquet to sql, save, re-read from avro
2019-12-01 13:31:21 WARN  DatasetBoundSliceDataset:190 - Saving directly as Parquet from SQL. Options other than compression codec are ignored.
- transform variants to slice genomic dataset
- transform variants to coverage genomic dataset
- transform variants to feature genomic dataset
- transform variants to fragment genomic dataset
- transform variants to read genomic dataset
- transform variants to genotype genomic dataset
- transform variants to variant context genomic dataset
- filter RDD bound variants to filters passed
- filter dataset bound variants to filters passed
- filter RDD bound variants by quality
- filter dataset bound variants by quality
- filter RDD bound variants by read depth
- filter dataset bound variants by read depth
- filter RDD bound variants by reference read depth
- filter dataset bound variants by reference read depth
- filter RDD bound single nucleotide variants
- filter dataset bound single nucleotide variants
- filter RDD bound multiple nucleotide variants
- filter dataset bound multiple nucleotide variants
- filter RDD bound indel variants
- filter dataset bound indel variants
- filter RDD bound variants to single nucleotide variants
- filter dataset bound variants to single nucleotide variants
- filter RDD bound variants to multiple nucleotide variants
- filter dataset bound variants to multiple nucleotide variants
- filter RDD bound variants to indel variants
- filter dataset bound variants to indel variants
- transform dataset via java API
Run completed in 7 minutes, 3 seconds.
Total number of tests run: 1175
Suites: completed 68, aborted 0
Tests: succeeded 1175, failed 0, canceled 0, ignored 5, pending 0
All tests passed.
[INFO] 
[INFO] >>> scoverage-maven-plugin:1.1.1:report (default-cli) > [scoverage]test @ adam-core-spark2_2.11 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-core-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-core-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-core-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala added.
[INFO] Source directory: /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/generated-sources/src/main/scala added.
[INFO] 
[INFO] --- exec-maven-plugin:1.5.0:java (generate-scala-products) @ adam-core-spark2_2.11 ---
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] 
[INFO] --- exec-maven-plugin:1.5.0:java (generate-scala-projection-fields) @ adam-core-spark2_2.11 ---
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-core-spark2_2.11 ---
[INFO] Modified 2 of 203 .scala files
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:pre-compile (default-cli) @ adam-core-spark2_2.11 ---
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-core-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-core-spark2_2.11 ---
[INFO] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/java:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/generated-sources/src/main/scala:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/generated-sources/annotations:-1: info: compiling
[INFO] Compiling 139 source files to /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/2.11.12/scoverage-classes at 1575235902463
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicDataset.scala:3099: warning: no valid targets for annotation on value uTag - it is discarded unused. You may specify targets with meta-annotations, e.g. @(transient @getter)
[WARNING]   @transient val uTag: TypeTag[U]
[WARNING]    ^
[INFO] [info] Cleaning datadir [/home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/scoverage-data]
[INFO] [info] Beginning coverage instrumentation
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[WARNING] [warn] Could not instrument [EmptyTree$/null]. No pos.
[INFO] [info] Instrumentation completed [17311 statements]
[INFO] [info] Wrote instrumentation file [/home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/scoverage-data/scoverage.coverage.xml]
[INFO] [info] Will write measurement data to [/home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/scoverage-data]
[WARNING] warning: there were 89 deprecation warnings; re-run with -deprecation for details
[WARNING] warning: there were 5 feature warnings; re-run with -feature for details
[WARNING] three warnings found
[INFO] prepare-compile in 0 s
[INFO] compile in 35 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-core-spark2_2.11 ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 6 source files to /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/2.11.12/scoverage-classes
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:post-compile (default-cli) @ adam-core-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-core-spark2_2.11 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-core-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 152 resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-core-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-core-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-core-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-core-spark2_2.11 ---
Discovery starting.
Discovery completed in 2 seconds, 464 milliseconds.
Run starting. Expected test count is: 1175
RepairPartitionsSuite:
- don't pull from the first partition
- properly handle pulling from an empty iterator
- gets a single read from the partition if there are no other reads in the pair
- gets all the reads from a pair from the start of a partition
- properly handle dropping from an empty iterator
- don't drop from the first partition
- drop a single read from the partition if there are no other reads in the pair
- drops all the reads from a pair from the start of a partition
- only append to the first partition
- drop a single read from the partition and append read when in the middle
- drop reads from the start and don't append when in the last partition
- can't have more records than number of partitions
- unroll array for broadcast
2019-12-01 13:32:23 WARN  Utils:66 - Your hostname, amp-jenkins-staging-worker-02 resolves to a loopback address: 127.0.1.1; using 192.168.10.32 instead (on interface eno1)
2019-12-01 13:32:23 WARN  Utils:66 - Set SPARK_LOCAL_IP if you need to bind to another address
2019-12-01 13:32:23 WARN  NativeCodeLoader:62 - Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
- move pairs around an rdd
FlagStatSuite:
- Standard FlagStat test
ModPartitionerSuite:
- report number of partitions correctly
- partition a number that is lower than the number of partitions and positive
- partition a number that is greater than the number of partitions and positive
- partition a number that is lower than the number of partitions and negative
- partition a number that is greater than the number of partitions and negative
- fire an exception if input is not an integer
TwoBitFileSuite:
- correctly read sequence from .2bit file
- correctly return masked sequences from .2bit file
- correctly return Ns from .2bit file
- correctly calculates sequence dictionary
NonoverlappingRegionsSuite:
- alternating returns an alternating seq of items
- Single region returns itself
- Two adjacent regions will be merged
- Nonoverlapping regions will all be returned
- Many overlapping regions will all be merged
- ADAMRecords return proper references
ReferencePositionSuite:
- create reference position from mapped read
- create reference position from variant
- create reference position from genotype
- create reference position from variant starting at vcf 0
- create reference position from genotype starting at vcf 0
ConsensusGeneratorFromReadsSuite:
- checking search for consensus list for artificial reads
FragmentConverterSuite:
- build a fragment collector and convert to a read
- if a fragment isn't associated with a contig, don't get a fragment collector
- convert an rdd of discontinuous fragments, all from the same contig
- convert an rdd of contiguous fragments, all from the same contig
- convert an rdd of varied fragments from multiple contigs
FileMergerSuite:
- cannot write both empty gzip block and cram eof
- buffer size must be non-negative
RichAlignmentSuite:
- Unclipped Start
- Unclipped End
- tags contains optional fields
- read overlap unmapped read
- read overlap reference position
- read overlap same position different contig
SingleReadBucketSuite:
- convert unmapped pair to fragment
- convert proper pair to fragment
- convert read pair to fragment with first of pair chimeric read
RecalibrationTableSuite:
- look up quality scores in table
FlankSlicesSuite:
- don't put flanks on non-adjacent slices
- put flanks on adjacent slices
InterleavedFastqInputFormatSuite:
- interleaved FASTQ hadoop reader: interleaved_fastq_sample1.ifq->interleaved_fastq_sample1.ifq.output
- interleaved FASTQ hadoop reader: interleaved_fastq_sample2.ifq->interleaved_fastq_sample2.ifq.output
- interleaved FASTQ hadoop reader: interleaved_fastq_sample3.ifq->interleaved_fastq_sample3.ifq.output
- interleaved FASTQ hadoop reader: interleaved_fastq_sample4.ifq->interleaved_fastq_sample4.ifq.output
- interleaved FASTQ hadoop reader: interleaved_fastq_sample5.ifq->interleaved_fastq_sample5.ifq.output
TreeRegionJoinSuite:
- run a join between data on a single contig
ReferenceRegionSuite:
- cannot create an empty predicate
- parse empty string throws IllegalArgumentException
- parse contigName only string into reference regions
- parse to end strings into reference regions
- parse string into reference regions
- contains(: ReferenceRegion)
- contains(: ReferencePosition)
- merge
- overlaps and covers
- overlapsBy and coversBy
- distance(: ReferenceRegion)
- distance(: ReferencePosition)
- unstrandedDistance
- subtract fails on non-overlapping and non-covering regions
- subtract
- create region from unmapped read fails
- create region from read with null alignment positions fails
- create stranded region from unmapped read fails
- create stranded region from read with null alignment positions fails
- create stranded region from read with null alignment strand fails
- create stranded region from read on forward strand
- create stranded region from read on reverse strand
- create region from mapped read contains read start and end
- validate that adjacent regions can be merged
- validate that non-adjacent regions cannot be merged
- validate that nearby regions can be merged
- validate that non-nearby regions cannot be merged
- compute convex hull of two sets
- region name is sanitized when creating region from read
- intersection fails on non-overlapping regions
- intersection fails when minOverlap is not met
- compute intersection
- overlap tests for oriented reference region
- check the width of a reference region
- make a reference region for a variant or genotype
- make a reference region for a variant or genotype starting at VCF 0
- uniformly pad a reference region
- uniformly pad a reference region into negative coordinate space, ensure non negative start
- unevenly pad a reference region
- unevenly pad a reference region into negative coordinate space, ensure non negative start
- can build an open ended reference region
- can build an open ended reference region with strand
- can build a reference region with an open start position
- can build a reference region with an open start position with strand
- can build a reference region that covers the entirety of a contig
- can build a reference region that covers the entirety of a contig with strand
- convert a genotype and then get the reference region
- create region from feature with null alignment positions fails
- create stranded region from feature with null alignment positions fails
- create stranded region from feature with null alignment strand fails
- create stranded region from feature on forward strand
- create stranded region from feature on reverse strand
CoverageDatasetSuite:
- correctly saves coverage
- can read a bed file to coverage
- correctly filters coverage with predicate
- keeps sample metadata
- can read a bed file with multiple samples to coverage
- correctly flatmaps coverage without aggregated bins
- correctly flatmaps coverage with aggregated bins
- collapses coverage records in one partition
- approximately collapses coverage records in multiple partitions
2019-12-01 13:32:44 WARN  DatasetBoundSliceDataset:190 - Saving directly as Parquet from SQL. Options other than compression codec are ignored.
- transform coverage to slice genomic dataset
- transform coverage to feature genomic dataset
2019-12-01 13:32:46 WARN  Utils:66 - Truncated the string representation of a plan since it was too large. This behavior can be adjusted by setting 'spark.debug.maxToStringFields' in SparkEnv.conf.
- transform coverage to fragment genomic dataset
- transform coverage to read genomic dataset
- transform coverage to genotype genomic dataset
- transform coverage to variant genomic dataset
- transform coverage to variant context genomic dataset
- copy coverage rdd
- copy coverage dataset
- copy coverage rdd without sequence dictionary
- copy coverage dataset without sequence dictionary
- transform dataset via java API
RecalibratorSuite:
- don't replace quality if quality was null
- if no covariates, return alignment
- skip recalibration if base is below quality threshold
- recalibrate changed bases above quality threshold
SliceDatasetSuite:
- create a new slice genomic dataset
- create a new slice genomic dataset with sequence dictionary
- merge slices into a sequence genomic dataset
- save as parquet
- round trip as parquet
- save as fasta
- save as single file fasta
- convert slices to reads
- convert slices to sequences
GenotypeDatasetSuite:
- union two genotype genomic datasets together
- round trip to parquet
- round trip to partitioned parquet
- use broadcast join to pull down genotypes mapped to targets
- use right outer broadcast join to pull down genotypes mapped to targets
- use shuffle join to pull down genotypes mapped to targets
- use right outer shuffle join to pull down genotypes mapped to targets
- use left outer shuffle join to pull down genotypes mapped to targets
- use full outer shuffle join to pull down genotypes mapped to targets
- use shuffle join with group by to pull down genotypes mapped to targets
- use right outer shuffle join with group by to pull down genotypes mapped to targets
- convert back to variant contexts
- load parquet to sql, save, re-read from avro
2019-12-01 13:33:15 WARN  DatasetBoundSliceDataset:190 - Saving directly as Parquet from SQL. Options other than compression codec are ignored.
- transform genotypes to slice genomic dataset
- transform genotypes to coverage genomic dataset
- transform genotypes to feature genomic dataset
- transform genotypes to fragment genomic dataset
- transform genotypes to read genomic dataset
- transform genotypes to variant genomic dataset
- transform genotypes to variant context genomic dataset
- loading genotypes then converting to variants yields same output as loading variants
- filter RDD bound genotypes to genotype filters passed
- filter dataset bound genotypes to genotype filters passed
- filter RDD bound genotypes by genotype quality
- filter dataset bound genotypes by genotype quality
- filter RDD bound genotypes by read depth
- filter dataset bound genotypes by read depth
- filter RDD bound genotypes by alternate read depth
- filter dataset bound genotypes by alternate read depth
- filter RDD bound genotypes by reference read depth
- filter dataset bound genotypes by reference read depth
- filter RDD bound genotypes by sample
- filter dataset bound genotypes by sample
- filter RDD bound genotypes by samples
- filter dataset bound genotypes by samples
- filter RDD bound no call genotypes
- filter dataset no call genotypes
- round trip gVCF END attribute without nested variant annotations rdd bound
- round trip gVCF END attribute without nested variant annotations dataset bound
- round trip gVCF END attribute with nested variant annotations rdd bound
- round trip gVCF END attribute with nested variant annotations dataset bound
- transform dataset via java API
FragmentDatasetSuite:
- don't lose any reads when piping interleaved fastq to sam
- don't lose any reads when piping tab5 to sam
- don't lose any reads when piping tab6 to sam
- use broadcast join to pull down fragments mapped to targets
- use right outer broadcast join to pull down fragments mapped to targets
- use shuffle join to pull down fragments mapped to targets
- use right outer shuffle join to pull down fragments mapped to targets
- use left outer shuffle join to pull down fragments mapped to targets
- use full outer shuffle join to pull down fragments mapped to targets
- use shuffle join with group by to pull down fragments mapped to targets
- use right outer shuffle join with group by to pull down fragments mapped to targets
- bin quality scores in fragments
- union two genomic datasets of fragments together
- load parquet to sql, save, re-read from avro
- transform fragments to slice genomic dataset
- transform fragments to coverage genomic dataset
- transform fragments to feature genomic dataset
- transform fragments to read genomic dataset
- transform fragments to genotype genomic dataset
- transform fragments to variant genomic dataset
- transform fragments to variant context genomic dataset
- paired read names with index sequences in read names can group into fragments
- interleaved paired read names with index sequences in read names can group into fragments
- interleaved paired read names with index sequences in read names as fragments
- transform dataset via java API
- dataset and rdd conversion to alignments are equivalent
SingleFastqInputFormatSuite:
- FASTQ hadoop reader: fastq_sample1.fq->single_fastq_sample1.fq.output
- FASTQ hadoop reader: fastq_sample2.fq->single_fastq_sample2.fq.output
- FASTQ hadoop reader: fastq_sample3.fq->single_fastq_sample3.fq.output
- FASTQ hadoop reader: fastq_sample4.fq->single_fastq_sample4.fq.output
VariantContextDatasetSuite:
- load a gvcf with a missing info field set to .
- union two variant context genomic datasets together
- can write, then read in .vcf file
- can write as a single file via simple saveAsVcf method, then read in .vcf file
- can write as a single file via full saveAsVcf method, then read in .vcf file
- transform a vcf file with bad header
- read a vcf file with multi-allelic variants to split
- support VCFs with +Inf/-Inf float values
- support VCFs with `nan` instead of `NaN` float values
- don't lose any variants when piping as VCF
- pipe works with empty partitions
- don't lose any non-default VCF header lines or attributes when piping as VCF
- save a file sorted by contig index
- save a lexicographically sorted file
- save a multiallelic gvcf !!! IGNORED !!!
- test metadata
- save sharded bgzip vcf
- save bgzip vcf as single file
- can't save file with non-vcf extension
- transform variant contexts to slice genomic dataset
- transform variant contexts to coverage genomic dataset
- transform variant contexts to feature genomic dataset
- transform variant contexts to fragment genomic dataset
- transform variant contexts to read genomic dataset
- transform variant contexts to genotype genomic dataset
- transform variant contexts to variant genomic dataset
- save and reload from partitioned parquet
- transform dataset via java API
ConsensusSuite:
- test the insertion of a consensus insertion into a reference
- test the insertion of a consensus deletion into a reference
- inserting empty consensus returns the reference
SequenceDatasetSuite:
- create a new sequence genomic dataset
- create a new sequence genomic dataset with sequence dictionary
- save as parquet
- round trip as parquet
- save as fasta
- save as single file fasta
- convert sequences to reads
- convert sequences to slices
- slice sequences to a maximum length
- slice sequences shorter than maximum length
- filter sequences by overlapping region
- filter sequences failing to overlap region
- filter sequences by overlapping regions
- filter sequences failing to overlap regions
- slice sequences overlapping a smaller region
- slice sequences overlapping a larger region
- slice sequences failing to overlap a region
- slice sequences overlapping smaller regions
- slice sequences overlapping larger regions
- slice sequences failing to overlap regions
AttributeUtilsSuite:
- parseTags returns a reasonable set of tagStrings
- parseTags works with NumericSequence tagType
- empty string is parsed as zero tagStrings
- incorrectly formatted tag throws an exception
- string tag with a ':' in it is correctly parsed
- oq string tag with many ':' in it is correctly parsed
- oq string tag with a ',' in it is correctly parsed
- if a tag is an array but doesn't define it's format, throw
MarkDuplicatesSuite:
- single read
- reads at different positions
- reads at the same position
- reads at the same position with clipping
- reads on reverse strand
- unmapped reads
- read pairs
- read pairs with fragments
- quality scores
- read pairs that cross chromosomes
- single fragment
- fragments at different positions
- fragments at the same position
- fragments at the same position with clipping
- fragments on reverse strand
- unmapped fragments
- read pairs as fragments
- read pairs with fragments as fragments
- chimeric fragments
- inverse pairs
- supplemental reads
TranscriptEffectConverterSuite:
- parse empty transcript effect
- parse empty transcript effect strict validation stringency
- parse invalid transcript effect
- parse invalid transcript effect strict validation stringency
- parse transcript effect
- parse empty list VCF ANN attribute
- parse empty list VCF ANN attribute strict validation stringency
- parse empty string VCF ANN attribute
- parse empty string VCF ANN attribute strict validation stringency
- parse invalid VCF ANN attribute
- parse invalid VCF ANN attribute strict validation stringency
- parse VCF ANN attribute with one transcript effect
- parse VCF ANN attribute with multiple transcript effects
- convert to transcript effect from null VCF ANN attribute in variant context
- convert to transcript effect from empty list VCF ANN attribute in variant context
- convert to transcript effect from empty list VCF ANN attribute in variant context strict validation stringency
- convert to transcript effect from empty string VCF ANN attribute in variant context
- convert to transcript effect from empty string VCF ANN attribute in variant context strict validation stringency
- convert to transcript effect from invalid VCF ANN attribute in variant context
- convert to transcript effect from invalid VCF ANN attribute in variant context strict validation stringency
2019-12-01 13:34:41 WARN  TranscriptEffectConverter$:190 - Could not convert VCF INFO reserved key ANN value to TranscriptEffect, caught java.lang.NumberFormatException: For input string: "not a number".
- convert to transcript effect from VCF ANN attribute with invalid number in variant context lenient validation stringency
- convert to transcript effect from VCF ANN attribute with invalid fraction in variant context lenient validation stringency
2019-12-01 13:34:41 WARN  TranscriptEffectConverter$:190 - Could not convert VCF INFO reserved key ANN value to TranscriptEffect, caught java.lang.NumberFormatException: For input string: "not a number".
- convert to transcript effect from VCF ANN attribute with invalid number in variant context strict validation stringency
- convert to transcript effect from VCF ANN attribute with invalid fraction in variant context strict validation stringency
- convert to transcript effect from VCF ANN attribute in variant context different alt allele
- convert to transcript effect from VCF ANN attribute in variant context same alt allele
- convert to transcript effect from VCF ANN attribute in variant context multiple effects same alt allele
- convert transcript effect to VCF ANN attribute value
- convert transcript effect with null fields to VCF ANN attribute value
- convert transcript effect with incorrect fractional value to VCF ANN attribute value
2019-12-01 13:34:41 WARN  TranscriptEffectConverter$:190 - Incorrect fractional value ?/2, missing numerator
IndelRealignmentTargetSuite:
- checking simple realignment target
- creating simple target from read with deletion
- creating simple target from read with insertion
- joining simple realignment targets on same chr
- joining simple realignment targets on different chr throws exception
- creating targets from three intersecting reads, same indel
- creating targets from three intersecting reads, two different indel
- creating targets from two disjoint reads
- creating targets for artificial reads: one-by-one
- creating targets for artificial reads: all-at-once (merged)
- creating indel targets for mason reads
- additional indel targets taken from consensus generator
NormalizationUtilsSuite:
- cannot move an indel left if there are no bases to it's left
- move a simple indel to farthest position left until bases run out
- move a simple indel to farthest position left, past length of indel
- cannot move a left normalized indel in a short tandem repeat
- move an indel in a short tandem repeat
- move an indel in a short tandem repeat of more than 2 bases, where shift is not an integer multiple of repeated sequence length
- moving a simple read with single deletion that cannot shift
- shift an indel left by 0 in a cigar
- shift an indel left by 1 in a cigar
- do not left align a complex read which is already left aligned
ReadGroupDictionarySuite:
- simple conversion to and from sam read group
- sample name must be set
- simple equality checks
- get samples from read group dictionary
- empty read group is empty
- merging a dictionary with itself should work
- round trip a record with all attributes set
RightOuterTreeRegionJoinSuite:
- Ensure same reference regions get passed together
- Overlapping reference regions
InnerShuffleRegionJoinSuite:
- Overlapping reference regions
- Multiple reference regions do not throw exception
FeatureDatasetSuite:
- round trip GTF format
- save GTF as GFF3 format
- save GTF as BED format
- save GTF as IntervalList format
- save GTF as NarrowPeak format
- save GFF3 as GTF format
- save GFF3 as BED format
- save GFF3 as IntervalList format
- save GFF3 as NarrowPeak format
- round trip GFF3 format
- ignore FASTA sequence in GFF3 file
- save BED as GTF format
- save BED as GFF3 format
- save BED as IntervalList format
- save BED as NarrowPeak format
- round trip BED6 format
- keeps sample metadata
- round trip BED12 format
- save to UCSC BED format
- save IntervalList as GTF format
- save IntervalList as GFF3 format
- save IntervalList as BED format
- save IntervalList as IntervalList format
- save IntervalList as NarrowPeak format
- round trip IntervalList format
- save NarrowPeak as GTF format
- save NarrowPeak as GFF3 format
- save NarrowPeak as BED format
- save NarrowPeak as IntervalList format
- save NarrowPeak as NarrowPeak format
- round trip NarrowPeak format
- sort by reference
- sort by reference and feature fields
- sort gene features by reference and gene structure
- sort transcript features by reference and gene structure
- sort exon features by reference and gene structure
- sort intron features by reference and gene structure
- correctly flatmaps CoverageDataset from FeatureDataset
- use broadcast join to pull down features mapped to targets
- use right outer broadcast join to pull down features mapped to targets
- use shuffle join to pull down features mapped to targets
- use right outer shuffle join to pull down features mapped to targets
- use left outer shuffle join to pull down features mapped to targets
- use full outer shuffle join to pull down features mapped to targets
- use shuffle join with group by to pull down features mapped to targets
- use right outer shuffle join with group by to pull down features mapped to targets
- union two feature rdds together
- obtain sequence dictionary contig lengths from header in IntervalList format
- don't lose any features when piping as BED format
- don't lose any features when piping as GTF format
- don't lose any features when piping as GFF3 format
- don't lose any features when piping as NarrowPeak format
- load parquet to sql, save, re-read from avro
- load partitioned parquet to sql, save, re-read from avro
2019-12-01 13:35:18 WARN  DatasetBoundSliceDataset:190 - Saving directly as Parquet from SQL. Options other than compression codec are ignored.
- transform features to slice genomic dataset
- transform features to coverage genomic dataset
- transform features to fragment genomic dataset
- transform features to read genomic dataset
- transform features to genotype genomic dataset
- transform features to variant genomic dataset
- transform features to variant context genomic dataset
- filter RDD bound features by feature type
- filter dataset bound features by feature type
- filter RDD bound features by feature types
- filter dataset bound features by feature types
- filter RDD bound features by gene
- filter dataset bound features by gene
- filter RDD bound features by genes
- filter dataset bound features by genes
- filter RDD bound features by transcript
- filter dataset bound features by transcript
- filter RDD bound features by transcripts
- filter dataset bound features by transcripts
- filter RDD bound features by exon
- filter dataset bound features by exon
- filter RDD bound features by exons
- filter dataset bound features by exons
- filter RDD bound features by score
- filter dataset bound features by score
- filter RDD bound features by parent
- filter dataset bound features by parent
- filter RDD bound features by parents
- filter dataset bound features by parents
- filter RDD bound features by attribute
- filter dataset bound features by attribute
- transform dataset via java API
AlphabetSuite:
- test size of a case-sensitive alphabet
- test apply of a case-sensitive alphabet
- test reverse complement of a case-sensitive alphabet
- test exact reverse complement of a case-sensitive alphabet
- test size of a case-insensitive alphabet
- test apply of a case-insensitive alphabet
- test reverse complement of a case-insensitive alphabet
- test exact reverse complement of a case-insensitive alphabet
- DNA alphabet
- map unknown bases to N
SortedGenomicDatasetSuite:
- testing that partition and sort provide correct outputs
- testing copartition maintains or adds sort
- testing that we don't drop any data on the right side even though it doesn't map to a partition on the left
- testing that sorted shuffleRegionJoin matches unsorted
- testing that sorted fullOuterShuffleRegionJoin matches unsorted
- testing that sorted rightOuterShuffleRegionJoin matches unsorted
- testing that sorted leftOuterShuffleRegionJoin matches unsorted
- testing that we can persist the sorted knowledge
VariantContextConverterSuite:
- Convert htsjdk site-only SNV to ADAM
- Convert somatic htsjdk site-only SNV to ADAM
- Convert htsjdk site-only CNV to ADAM
- Convert htsjdk SNV w/ genotypes w/ phase information to ADAM
- Convert htsjdk SNV with different variant filters to ADAM
- Convert htsjdk SNV with different genotype filters to ADAM
- Convert ADAM site-only SNV to htsjdk
- Convert ADAM SNV w/ genotypes to htsjdk
- Convert ADAM SNV w/ genotypes but bad SB to htsjdk with strict validation
2019-12-01 13:35:38 WARN  VariantContextConverter:2300 - Applying annotation extraction function <function2> to {"variant": {"referenceName": "1", "start": 0, "end": 1, "names": [], "splitFromMultiAllelic": false, "referenceAllele": "A", "alternateAllele": "T", "quality": null, "filtersApplied": null, "filtersPassed": null, "filtersFailed": [], "annotation": null}, "referenceName": null, "start": null, "end": null, "variantCallingAnnotations": {"filtersApplied": null, "filtersPassed": null, "filtersFailed": [], "downsampled": null, "baseQRankSum": null, "fisherStrandBiasPValue": 3.0, "rmsMapQ": 0.0, "mapq0Reads": 5, "mqRankSum": null, "readPositionRankSum": null, "genotypePriors": [], "genotypePosteriors": [], "vqslod": null, "culprit": null, "attributes": {}}, "sampleId": "NA12878", "sampleDescription": null, "processingDescription": null, "alleles": ["REF", "ALT"], "expectedAlleleDosage": null, "referenceReadDepth": null, "alternateReadDepth": null, "readDepth": null, "minReadDepth": null, "genotypeQuality": null, "genotypeLikelihoods": [], "nonReferenceLikelihoods": [], "strandBiasComponents": [0, 2], "splitFromMultiAllelic": false, "phased": false, "phaseSetId": null, "phaseQuality": null} failed with java.lang.IllegalArgumentException: requirement failed: Illegal strand bias components length. Must be empty or 4. In:
{"variant": {"referenceName": "1", "start": 0, "end": 1, "names": [], "splitFromMultiAllelic": false, "referenceAllele": "A", "alternateAllele": "T", "quality": null, "filtersApplied": null, "filtersPassed": null, "filtersFailed": [], "annotation": null}, "referenceName": null, "start": null, "end": null, "variantCallingAnnotations": {"filtersApplied": null, "filtersPassed": null, "filtersFailed": [], "downsampled": null, "baseQRankSum": null, "fisherStrandBiasPValue": 3.0, "rmsMapQ": 0.0, "mapq0Reads": 5, "mqRankSum": null, "readPositionRankSum": null, "genotypePriors": [], "genotypePosteriors": [], "vqslod": null, "culprit": null, "attributes": {}}, "sampleId": "NA12878", "sampleDescription": null, "processingDescription": null, "alleles": ["REF", "ALT"], "expectedAlleleDosage": null, "referenceReadDepth": null, "alternateReadDepth": null, "readDepth": null, "minReadDepth": null, "genotypeQuality": null, "genotypeLikelihoods": [], "nonReferenceLikelihoods": [], "strandBiasComponents": [0, 2], "splitFromMultiAllelic": false, "phased": false, "phaseSetId": null, "phaseQuality": null}.
- Convert ADAM SNV w/ genotypes but bad SB to htsjdk with lenient validation
- Convert htsjdk multi-allelic sites-only SNVs to ADAM
- Convert htsjdk multi-allelic SNVs to ADAM and back to htsjdk
- Convert gVCF reference records to ADAM
- Convert htsjdk variant context with no IDs to ADAM
- Convert htsjdk variant context with one ID to ADAM
- Convert htsjdk variant context with multiple IDs to ADAM
- Convert ADAM variant context with no names to htsjdk
- Convert ADAM variant context with one name to htsjdk
- Convert ADAM variant context with multiple names to htsjdk
- Convert ADAM variant context with null filters applied to htsjdk
- Convert ADAM variant context with no filters applied to htsjdk
- Convert ADAM variant context with passing filters to htsjdk
- Convert ADAM variant context with failing filters to htsjdk
- no phasing set going htsjdk->adam
- phased but no phase set info going htsjdk->adam
- set phase set and extract going htsjdk->adam
- no allelic depth going htsjdk->adam
- set allelic depth going htsjdk->adam
- no gt read depth going htsjdk->adam
- extract gt read depth going htsjdk->adam
- no min gt read depth going htsjdk->adam
- extract min gt read depth going htsjdk->adam
- no genotype quality going htsjdk->adam
- extract genotype quality going htsjdk->adam
- no phred likelihood going htsjdk->adam
- extract phred likelihoods going htsjdk->adam
- no strand bias info going htsjdk->adam
- extract strand bias info going htsjdk->adam
- no filters going htsjdk->adam
- filters passed going htsjdk->adam
- extract single filter going htsjdk->adam
- extract multiple filters going htsjdk->adam
- no fisher strand bias going htsjdk->adam
- extract fisher strand bias going htsjdk->adam
- no rms mapping quality going htsjdk->adam
- extract rms mapping quality going htsjdk->adam
- no mq0 going htsjdk->adam
- extract mq0 going htsjdk->adam
- no gt read depth going adam->htsjdk
- extract gt read depth going adam->htsjdk
- throw iae if missing one component of gt read depth going adam->htsjdk
- no depth going adam->htsjdk
- extract depth going adam->htsjdk
- no min depth going adam->htsjdk
- extract min depth going adam->htsjdk
- no quality going adam->htsjdk
- extract quality going adam->htsjdk
- no genotype likelihoods going adam->htsjdk
- extract genotype likelihoods going adam->htsjdk
- no strand bias going adam->htsjdk
- malformed strand bias going adam->htsjdk
- extract strand bias going adam->htsjdk
- no phasing info going adam->htsjdk
- unphased going adam->htsjdk
- phased but no ps/pq going adam->htsjdk
- phased but no pq going adam->htsjdk
- phased but no ps going adam->htsjdk
- phased going adam->htsjdk
- no filter info going adam->htsjdk
- if filters applied, must set passed/failed going adam->htsjdk
- filters passed going adam->htsjdk
- if filters failed, must set filters failed going adam->htsjdk
- single filter failed going adam->htsjdk
- multiple filters failed going adam->htsjdk
- no fisher strand bias going adam->htsjdk
- extract fisher strand bias going adam->htsjdk
- no rms mapping quality going adam->htsjdk
- extract rms mapping quality going adam->htsjdk
- no mapping quality 0 reads going adam->htsjdk
- extract mapping quality 0 reads going adam->htsjdk
- no names set going htsjdk->adam
- single name set going htsjdk->adam
- multiple names set going htsjdk->adam
- no quality going htsjdk->adam
- quality set going htsjdk->adam
- no filters applied going htsjdk->adam
- filters applied and passed going htsjdk->adam
- single filter applied and failed going htsjdk->adam
- multiple filters applied and failed going htsjdk->adam
- no names set adam->htsjdk
- set a single name adam->htsjdk
- set multiple names adam->htsjdk
- no qual set adam->htsjdk
- qual is set adam->htsjdk
- no filters applied adam->htsjdk
- null filters applied adam->htsjdk
- filters passed adam->htsjdk
- if filter failed, must have filters adam->htsjdk
- single filter failed adam->htsjdk
- multiple filters failed adam->htsjdk
- no ancestral allele set going htsjdk->adam
- ancestral allele set going htsjdk->adam
- no dbsnp membership set going htsjdk->adam
- dbsnp membership set going htsjdk->adam
- no hapmap2 membership set going htsjdk->adam
- hapmap2 membership set going htsjdk->adam
- no hapmap3 membership set going htsjdk->adam
- hapmap3 membership set going htsjdk->adam
- no validated set going htsjdk->adam
- validated set going htsjdk->adam
- no 1000G membership set going htsjdk->adam
- 1000G membership set going htsjdk->adam
- not somatic going htsjdk->adam
- somatic going htsjdk->adam
- no allele count going htsjdk->adam
- single allele count going htsjdk->adam
- multiple allele counts going htsjdk->adam
- no allele frequency going htsjdk->adam
- single allele frequency going htsjdk->adam
- single allele frequency is +Inf going htsjdk->adam
- single allele frequency is -Inf going htsjdk->adam
- multiple allele frequencies going htsjdk->adam
- no CIGAR going htsjdk->adam
- single CIGAR going htsjdk->adam
- multiple CIGARs going htsjdk->adam
- no read depth going htsjdk->adam
- single read depth going htsjdk->adam
- multiple read depths going htsjdk->adam
- no forward read depth going htsjdk->adam
- single forward read depth going htsjdk->adam
- multiple forward read depths going htsjdk->adam
- no reverse read depth going htsjdk->adam
- single reverse read depth going htsjdk->adam
- multiple reverse read depths going htsjdk->adam
- no ancestral allele set adam->htsjdk
- ancestral allele set adam->htsjdk
- no dbsnp membership set adam->htsjdk
- dbsnp membership set adam->htsjdk
- no hapmap2 membership set adam->htsjdk
- hapmap2 membership set adam->htsjdk
- no hapmap3 membership set adam->htsjdk
- hapmap3 membership set adam->htsjdk
- no validated set adam->htsjdk
- validated set adam->htsjdk
- no 1000G membership set adam->htsjdk
- 1000G membership set adam->htsjdk
- no allele count set adam->htsjdk
- allele count set adam->htsjdk
- no allele frequency set adam->htsjdk
- allele frequency set adam->htsjdk
- no cigar set adam->htsjdk
- cigar set adam->htsjdk
- no read depth set adam->htsjdk
- read depth set adam->htsjdk
- read depth without reference read depth
- reference read depth without read depth
- no forward read depth set adam->htsjdk
- forward read depth set adam->htsjdk
- reference forward read depth without forward read depth
- forward read depth without reference forward read depth
- no reverse read depth set adam->htsjdk
- reverse read depth set adam->htsjdk
- reference reverse read depth without reverse read depth
- reverse read depth without reference reverse read depth
- VCF INFO attribute Number=0 Type=Flag adam->htsjdk
- VCF INFO attribute Number=4 Type=Flag adam->htsjdk unsupported, strict !!! IGNORED !!!
- VCF INFO attribute Number=1 Type=Integer adam->htsjdk
- VCF INFO attribute Number=4 Type=Integer adam->htsjdk
- VCF INFO attribute Number=A Type=Integer adam->htsjdk
- VCF INFO attribute Number=R Type=Integer adam->htsjdk
- VCF INFO attribute Number=R Type=String adam->htsjdk
- VCF INFO attribute Number=G Type=String adam->htsjdk not supported
- VCF INFO attribute Number=0 Type=Flag htsjdk->adam
- VCF INFO attribute Number=1 Type=Integer htsjdk->adam
- VCF INFO attribute Number=4 Type=Integer htsjdk->adam
- VCF INFO attribute Number=4 Type=Float htsjdk->adam
- VCF INFO attribute Number=A Type=Integer htsjdk->adam
- VCF INFO attribute Number=R Type=Integer htsjdk->adam
- VCF INFO attribute Number=R Type=String htsjdk->adam
- VCF INFO attribute Number=G Type=String htsjdk->adam not supported
- VCF FORMAT attribute Number=0 Type=Flag adam->htsjdk not supported
- VCF FORMAT attribute Number=1 Type=Integer adam->htsjdk
- VCF FORMAT attribute Number=4 Type=Integer adam->htsjdk
- VCF FORMAT attribute Number=A Type=Integer adam->htsjdk
- VCF FORMAT attribute Number=R Type=Integer adam->htsjdk
- VCF FORMAT attribute Number=R Type=String adam->htsjdk
- VCF FORMAT attribute Number=0 Type=Flag htsjdk->adam is not supported
- VCF FORMAT attribute Number=1 Type=Integer htsjdk->adam
- VCF FORMAT attribute Number=4 Type=Integer htsjdk->adam
- VCF FORMAT attribute Number=4 Type=Float htsjdk->adam
- VCF FORMAT attribute Number=A Type=Integer htsjdk->adam
- VCF FORMAT attribute Number=R Type=Integer htsjdk->adam
- VCF FORMAT attribute Number=R Type=String htsjdk->adam
- VCF FORMAT attribute Number=G Type=String htsjdk->adam
- respect end position for symbolic alts
FastqRecordConverterSuite:
- test read name suffix and index of pair must match
- test parseReadInFastq, read suffix removal
- test parseReadInFastq, read metadata removal
- test parseReadInFastq, read quality shorter than read length, padded with B
- test parseReadInFastq, read quality longer than read length 
- test parseReadInFastq, no read quality
- testing FastqRecordConverter.convertPair with valid input
- testing FastqRecordConverter.convertPair with 7-line invalid input
- testing FastqRecordConverter.convertPair with invalid input: first read length and qual don't match
- testing FastqRecordConverter.convertPair with invalid input: second read length and qual don't match
- testing FastqRecordConverter.convertFragment with valid input
- testing FastqRecordConverter.convertFragment with another valid input having /1, /2 suffixes
- testing FastqRecordConverter.convertFragment with invalid input: different read names
- testing FastqRecordConverter.convertRead with valid input
- testing FastqRecordConverter.convertRead with valid input: setFirstOfPair set to true
- testing FastqRecordConverter.convertRead with valid input: setSecondOfPair set to true
- testing FastqRecordConverter.convertRead with valid input: setFirstOfPair and setSecondOfPair both true
- testing FastqRecordConverter.convertRead with valid input, no qual, strict
- testing FastqRecordConverter.convertRead with valid input, no qual, not strict
AttributeSuite:
- test SAMTagAndValue parsing
- Attributes can be correctly re-encoded as text SAM tags
GFF3HeaderWriterSuite:
- write gff3 header pragma
BinQualitiesSuite:
- make a quality score bin
- can't have a quality score bin with negative score
- can't have a quality score bin with high score below low
- can't have a quality score bin with high score above 255
- can't have a quality score bin with score outside
- make a quality score bin from a string
- quality score bin must have exactly 3 elements
- quality score bin must be integers
- must define at least one bin
- build multiple bins
- rewrite quality scores for a read
- rewriting quality scores fails if bins overlap
- rewriting quality scores fails if base is out of bounds
- skip read if qualities are null
- rewrite a read
IndexedFastaFileSuite:
- correctly generates sequence dictionary from .dict file
- correctly gets sequence
- fails when fai index is not provided
2019-12-01 13:35:39 WARN  IndexedFastaFile:190 - Caught exception java.lang.NullPointerException when loading FASTA sequence dictionary. Using empty dictionary instead.
- passes when dict is not provided and ValidationStringency = LENIENT
SAMRecordConverterSuite:
- testing the fields in an Alignment obtained from a mapped samRecord conversion
- testing the fields in an Alignment obtained from an unmapped samRecord conversion
- '*' quality gets nulled out
- don't keep denormalized fields
ADAMContextSuite:
- ctr is accessible
- load from an empty directory
- sc.loadParquet should not fail on unmapped reads
- sc.loadParquet should not load a file without a type specified
- can read a small .SAM file
- can read a small .SAM file with a bad header with lenient validation
- loading a sam file with a bad header and strict stringency should fail
- can read a small .CRAM file
- can read a small .SAM with all attribute tag types
- can filter a .SAM file based on quality
- Can convert to phred
- Can convert from phred
- Can read a .gtf file
- Can read a .bed file
- Can read a BED 12 file
- Can read a .narrowPeak file
- Can read a .interval_list file
2019-12-01 13:35:44 WARN  VariantContextConverter:1662 - Saw invalid info field java.lang.IllegalArgumentException: Multivalued flags are not supported for INFO lines: INFO=<ID=ABADFLAG,Number=.,Type=Flag,Description="A no good, very bad flag.">. Ignoring...
2019-12-01 13:35:44 WARN  VariantContextConverter:2169 - Generating field extractor from header line INFO=<ID=ABADFLAG,Number=.,Type=Flag,Description="A no good, very bad flag."> failed: java.lang.IllegalArgumentException: Multivalue flags are not supported for INFO lines: INFO=<ID=ABADFLAG,Number=.,Type=Flag,Description="A no good, very bad flag.">
- can read a small .vcf file with a validation issue
- can read a small .vcf file
2019-12-01 13:35:44 WARN  VCFInputFormat:218 - file:/home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/2.11.12/test-classes/test.vcf.gz is not splittable, consider using block-compressed gzip (BGZF)
- can read a gzipped .vcf file
- can read a vcf file with an empty alt
- can read a BGZF gzipped .vcf file with .gz file extension
- can read a BGZF gzipped .vcf file with .bgz file extension
- can read a vcf file with a projection
- can read an uncompressed BCFv2.2 file !!! IGNORED !!!
- can read a BGZF compressed BCFv2.2 file !!! IGNORED !!!
- loadIndexedVcf with 1 ReferenceRegion
- loadIndexedVcf with multiple ReferenceRegions
- load block compressed interleaved fastq
- import records from interleaved FASTQ: 1
- import records from interleaved FASTQ: 2
- import records from interleaved FASTQ: 3
- import records from interleaved FASTQ: 4
- import block compressed single fastq
- import records from single ended FASTQ: 1
- import records from single ended FASTQ: 2
- import records from single ended FASTQ: 3
- import records from single ended FASTQ: 4
- filter on load using the filter2 API
- saveAsParquet with file path
- saveAsParquet with file path, block size, page size
- saveAsParquet with save args
- read a HLA fasta from GRCh38
- read a gzipped fasta file
- read a fasta file with comments, gaps, and translation stops
- loadIndexedBam with 1 ReferenceRegion
- loadIndexedBam with multiple ReferenceRegions
- loadIndexedBam with multiple ReferenceRegions and indexed bams
- loadIndexedBam with multiple ReferenceRegions and a directory of indexed bams
- loadIndexedBam should throw exception without an index file
- loadIndexedBam should work with indexed file with index naming format <filename>.bai
- loadIndexedBam glob should throw exception without an index file
- loadBam with a glob
- loadBam with a directory
- load vcf with a glob
- load vcf from a directory
- load gvcf which contains a multi-allelic row from a directory
- load and save gvcf which contains rows without likelihoods
- parse annotations for multi-allelic rows
- load parquet with globs
- bad glob should fail
- empty directory should fail
- can read a SnpEff-annotated .vcf file
- loadAlignments should not fail on single-end and paired-end fastq reads
- load queryname sorted sam as fragments
- load query grouped sam as fragments
- load paired fastq
- load paired fastq without cache
- load paired fastq as fragments
- load paired fastq as fragments without cache
- load HTSJDK sequence dictionary
- load Bedtools .genome file as sequence dictionary
- load Bedtools .genome.txt file as sequence dictionary
- load UCSC Genome Browser chromInfo.txt file as sequence dictionary
- load unrecognized file extension as sequence dictionary fails
- load BED features with Bedtools .genome file as sequence dictionary
- load BED features with Bedtools .genome file as sequence dictionary, no matching features
- convert program record
- load program record from sam file
- load alignments from data frame
- load features from data frame
- load fragments from data frame
- load genotypes from data frame with default header lines
- load genotypes from data frame with empty header lines
- load reads from data frame
- load sequences from data frame
- load slices from data frame
- load variant contexts from data frame with default header lines
- load variant contexts from data frame with empty header lines
- load variants from data frame with default header lines
- load variants from data frame with empty header lines
- load alignments with metadata from data frame
- load features with metadata from data frame
- load fragments with metadata from data frame
- load genotypes with metadata from data frame
- load variant contexts with metadata from data frame
- load variants with metadata from data frame
- read a fasta file with short sequences as sequences
- read a fasta file with long sequences as sequences
- read a fasta file with short sequences as slices
- read a fasta file with long sequences as slices
CycleCovariateSuite:
- compute covariates for an unpaired read on the negative strand
- compute covariates for a first-of-pair read on the negative strand
- compute covariates for a second-of-pair read on the negative strand
- compute covariates for an unpaired read on the positive strand
- compute covariates for a first-of-pair read on the positive strand
- compute covariates for a second-of-pair read on the positive strand
AlignmentConverterSuite:
- testing the fields in a converted ADAM Read
- converting a read with null quality is OK
- convert a read to fastq
- reverse complement reads when converting to fastq
- converting to fastq with unmapped reads where  read reverse complemented flag (Ox10) was NOT set
- converting to fastq with unmapped reads where reverse complemented flag (0x10) was set
- converting a fragment with no alignments should yield unaligned reads
- converting a fragment with alignments should restore the alignments
- read negative strand is propagated even when not mapped
ConsensusGeneratorFromKnownsSuite:
- no consensuses for empty target
- no consensuses for reads that don't overlap a target
- return a consensus for read overlapping a single target
RichCigarSuite:
- moving 2 bp from a deletion to a match operator
- moving 2 bp from a insertion to a match operator
- moving 1 base in a two element cigar
- move to start of read
- process right clipped cigar
- process left clipped cigar
- process cigar clipped on both ends
MDTaggingSuite:
- test adding MDTags over boundary
- test adding MDTags; reads span full contig
- test adding MDTags; reads start inside first fragment
- test adding MDTags; reads end inside last fragment
- test adding MDTags; reads start inside first fragment and end inside last fragment
- test adding MDTags; reads start and end in middle fragements
2019-12-01 13:36:34 WARN  BlockManager:66 - Putting block rdd_5_3 failed due to exception java.lang.Exception: Contig chr2 not found in reference map with keys: chr1.
2019-12-01 13:36:34 WARN  BlockManager:66 - Block rdd_5_3 could not be removed as it was not found on disk or in memory
2019-12-01 13:36:34 ERROR Executor:91 - Exception in task 3.0 in stage 2.0 (TID 11)
java.lang.Exception: Contig chr2 not found in reference map with keys: chr1
	at org.bdgenomics.adam.util.ReferenceContigMap$$anonfun$extract$1.apply(ReferenceContigMap.scala:63)
	at org.bdgenomics.adam.util.ReferenceContigMap$$anonfun$extract$1.apply(ReferenceContigMap.scala:63)
	at scala.collection.MapLike$class.getOrElse(MapLike.scala:128)
	at scala.collection.AbstractMap.getOrElse(Map.scala:59)
	at org.bdgenomics.adam.util.ReferenceContigMap.extract(ReferenceContigMap.scala:61)
	at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1$$anonfun$apply$2.apply(MDTagging.scala:76)
	at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1$$anonfun$apply$2.apply(MDTagging.scala:71)
	at scala.Option$WithFilter.map(Option.scala:207)
	at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1.apply(MDTagging.scala:71)
	at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1.apply(MDTagging.scala:69)
	at scala.collection.Iterator$$anon$11.next(Iterator.scala:410)
	at org.apache.spark.storage.memory.MemoryStore.putIterator(MemoryStore.scala:222)
	at org.apache.spark.storage.memory.MemoryStore.putIteratorAsValues(MemoryStore.scala:299)
	at org.apache.spark.storage.BlockManager$$anonfun$doPutIterator$1.apply(BlockManager.scala:1165)
	at org.apache.spark.storage.BlockManager$$anonfun$doPutIterator$1.apply(BlockManager.scala:1156)
	at org.apache.spark.storage.BlockManager.doPut(BlockManager.scala:1091)
	at org.apache.spark.storage.BlockManager.doPutIterator(BlockManager.scala:1156)
	at org.apache.spark.storage.BlockManager.getOrElseUpdate(BlockManager.scala:882)
	at org.apache.spark.rdd.RDD.getOrCompute(RDD.scala:335)
	at org.apache.spark.rdd.RDD.iterator(RDD.scala:286)
	at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90)
	at org.apache.spark.scheduler.Task.run(Task.scala:123)
	at org.apache.spark.executor.Executor$TaskRunner$$anonfun$10.apply(Executor.scala:408)
	at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1360)
	at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:414)
	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
	at java.lang.Thread.run(Thread.java:748)
2019-12-01 13:36:34 WARN  TaskSetManager:66 - Lost task 3.0 in stage 2.0 (TID 11, localhost, executor driver): java.lang.Exception: Contig chr2 not found in reference map with keys: chr1
	at org.bdgenomics.adam.util.ReferenceContigMap$$anonfun$extract$1.apply(ReferenceContigMap.scala:63)
	at org.bdgenomics.adam.util.ReferenceContigMap$$anonfun$extract$1.apply(ReferenceContigMap.scala:63)
	at scala.collection.MapLike$class.getOrElse(MapLike.scala:128)
	at scala.collection.AbstractMap.getOrElse(Map.scala:59)
	at org.bdgenomics.adam.util.ReferenceContigMap.extract(ReferenceContigMap.scala:61)
	at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1$$anonfun$apply$2.apply(MDTagging.scala:76)
	at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1$$anonfun$apply$2.apply(MDTagging.scala:71)
	at scala.Option$WithFilter.map(Option.scala:207)
	at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1.apply(MDTagging.scala:71)
	at org.bdgenomics.adam.rdd.read.MDTagging$$anonfun$addMDTagsBroadcast$1.apply(MDTagging.scala:69)
	at scala.collection.Iterator$$anon$11.next(Iterator.scala:410)
	at org.apache.spark.storage.memory.MemoryStore.putIterator(MemoryStore.scala:222)
	at org.apache.spark.storage.memory.MemoryStore.putIteratorAsValues(MemoryStore.scala:299)
	at org.apache.spark.storage.BlockManager$$anonfun$doPutIterator$1.apply(BlockManager.scala:1165)
	at org.apache.spark.storage.BlockManager$$anonfun$doPutIterator$1.apply(BlockManager.scala:1156)
	at org.apache.spark.storage.BlockManager.doPut(BlockManager.scala:1091)
	at org.apache.spark.storage.BlockManager.doPutIterator(BlockManager.scala:1156)
	at org.apache.spark.storage.BlockManager.getOrElseUpdate(BlockManager.scala:882)
	at org.apache.spark.rdd.RDD.getOrCompute(RDD.scala:335)
	at org.apache.spark.rdd.RDD.iterator(RDD.scala:286)
	at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90)
	at org.apache.spark.scheduler.Task.run(Task.scala:123)
	at org.apache.spark.executor.Executor$TaskRunner$$anonfun$10.apply(Executor.scala:408)
	at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1360)
	at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:414)
	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
	at java.lang.Thread.run(Thread.java:748)

2019-12-01 13:36:34 ERROR TaskSetManager:70 - Task 3 in stage 2.0 failed 1 times; aborting job
- try realigning a read on a missing contig, stringency == STRICT
2019-12-01 13:36:34 WARN  MDTagging:190 - Caught exception when processing read chr2: java.lang.Exception: Contig chr2 not found in reference map with keys: chr1
- try realigning a read on a missing contig, stringency == LENIENT
FileExtensionsSuite:
- ends in gzip extension
- is a vcf extension
PhredUtilsSuite:
- convert low phred score to log and back
- convert high phred score to log and back
- convert overflowing phred score to log and back and clip
- convert negative zero log probability to phred and clip
- round trip log probabilities
ReadDatasetSuite:
- create a new read genomic dataset
- create a new read genomic dataset with sequence dictionary
- save as parquet
- round trip as parquet
- save as fastq
- save as single file fastq
- filter read genomic dataset by reference region
- broadcast region join reads and features
- shuffle region join reads and features
- convert reads to alignments
- convert reads to sequences
- convert reads to slices
AlignmentDatasetSuite:
- sorting reads
- unmapped reads go at the end when sorting
- coverage does not fail on unmapped reads
- computes coverage
- computes coverage with multiple samples
- merges adjacent records with equal coverage values
- sorting reads by reference index
- round trip from ADAM to SAM and back to ADAM produces equivalent Read values
- round trip with single CRAM file produces equivalent Read values
- round trip with sharded CRAM file produces equivalent Read values
- SAM conversion sets read mapped flag properly
- load long FASTQ reads
- load FASTQ with no bases
- convert malformed FASTQ (no quality scores) => SAM => well-formed FASTQ => SAM
- round trip from ADAM to FASTQ and back to ADAM produces equivalent Read values
- round trip from ADAM to paired-FASTQ and back to ADAM produces equivalent Read values
- writing a small file with tags should produce the expected result
- writing a small sorted file as SAM should produce the expected result
- writing unordered sam from unordered sam
- writing ordered sam from unordered sam
- write single sam file back
- write single bam file back
- saveAsParquet with save args, sequence dictionary, and read group dictionary
- load parquet to sql, save, re-read from avro
- load from sam, save as partitioned parquet, and re-read from partitioned parquet
- save as SAM format
- save as sorted SAM format
- save as BAM format
- save as sorted BAM format
- save as FASTQ format
- save as ADAM parquet format
- saveAsSam SAM format
- saveAsSam SAM format single file
- saveAsSam sorted SAM format single file
- saveAsSam BAM format
- saveAsSam BAM format single file
- saveAsSam sorted BAM format single file
- saveAsFastq
- saveAsFastq as single file
- saveAsFastq with original base qualities
- saveAsFastq sorted by read name
- saveAsFastq sorted by read name with original base qualities
2019-12-01 13:37:06 WARN  RDDBoundAlignmentDataset:190 - Found 20 read names that don't occur exactly twice:
	1x:	20

Samples:
	simread:1:237728409:true
	simread:1:195211965:false
	simread:1:163841413:false
	simread:1:231911906:false
	simread:1:26472783:false
	simread:1:165341382:true
	simread:1:240344442:true
	simread:1:50683371:false
	simread:1:240997787:true
	simread:1:14397233:false
	simread:1:207027738:true
	simread:1:20101800:true
	simread:1:101556378:false
	simread:1:37577445:false
	simread:1:189606653:true
	simread:1:5469106:true
	simread:1:186794283:true
	simread:1:89554252:false
	simread:1:153978724:false
	simread:1:169801933:true
- saveAsFastq paired FASTQ
2019-12-01 13:37:07 WARN  RDDBoundAlignmentDataset:190 - Found 20 read names that don't occur exactly twice:
	1x:	20

Samples:
	simread:1:237728409:true
	simread:1:195211965:false
	simread:1:163841413:false
	simread:1:231911906:false
	simread:1:26472783:false
	simread:1:165341382:true
	simread:1:240344442:true
	simread:1:50683371:false
	simread:1:240997787:true
	simread:1:14397233:false
	simread:1:207027738:true
	simread:1:20101800:true
	simread:1:101556378:false
	simread:1:37577445:false
	simread:1:189606653:true
	simread:1:5469106:true
	simread:1:186794283:true
	simread:1:89554252:false
	simread:1:153978724:false
	simread:1:169801933:true
- saveAsPairedFastq
2019-12-01 13:37:08 WARN  RDDBoundAlignmentDataset:190 - Found 20 read names that don't occur exactly twice:
	1x:	20

Samples:
	simread:1:237728409:true
	simread:1:195211965:false
	simread:1:163841413:false
	simread:1:231911906:false
	simread:1:26472783:false
	simread:1:165341382:true
	simread:1:240344442:true
	simread:1:50683371:false
	simread:1:240997787:true
	simread:1:14397233:false
	simread:1:207027738:true
	simread:1:20101800:true
	simread:1:101556378:false
	simread:1:37577445:false
	simread:1:189606653:true
	simread:1:5469106:true
	simread:1:186794283:true
	simread:1:89554252:false
	simread:1:153978724:false
	simread:1:169801933:true
- saveAsPairedFastq as single files
- don't lose any reads when piping as SAM
2019-12-01 13:37:19 WARN  OutFormatterRunner:190 - Piped command List(sleep, 10) timed out after 5 seconds.
2019-12-01 13:37:19 WARN  OutFormatterRunner:190 - Piped command List(sleep, 10) timed out after 5 seconds.
- lose all records when a command times out
- lose no records without a timeout
2019-12-01 13:37:40 WARN  OutFormatterRunner:190 - Piped command List(python, /tmp/adamTestMvnhgcACDR/spark-9c9a2280-c864-4a67-b874-c6c7c0118e37/userFiles-664d0580-3a07-492c-9bdf-f20e00373418/timeout.py) timed out after 5 seconds.
2019-12-01 13:37:40 WARN  OutFormatterRunner:190 - Piped command List(python, /tmp/adamTestMvnhgcACDR/spark-9c9a2280-c864-4a67-b874-c6c7c0118e37/userFiles-664d0580-3a07-492c-9bdf-f20e00373418/timeout.py) timed out after 5 seconds.
- lose some records when a command times out
- don't lose any reads when piping as SAM using java pipe
- don't lose any reads when piping as BAM
- don't lose any reads when piping fastq to sam
- can properly set environment variables inside of a pipe
- read vcf from alignment pipe !!! IGNORED !!!
- use broadcast join to pull down reads mapped to targets
- use broadcast join against to pull down reads mapped to targets
- use right outer broadcast join to pull down reads mapped to targets
- use right outer broadcast join against to pull down reads mapped to targets
- use shuffle join with feature spanning partitions
- use shuffle join to pull down reads mapped to targets
- use shuffle join with flankSize to pull down reads mapped close to targets
- use right outer shuffle join to pull down reads mapped to targets
- use left outer shuffle join to pull down reads mapped to targets
- use full outer shuffle join to pull down reads mapped to targets
- use shuffle join with group by to pull down reads mapped to targets
- use right outer shuffle join with group by to pull down reads mapped to targets
- cannot provide empty quality score bins
- cannot provide bins with a gap
- cannot provide overlapping bins
- binning quality scores in reads succeeds even if reads have no quality scores
- bin quality scores in reads
- union two read files together
- test k-mer counter
- test dataset based k-mer counter
- transform reads to slice genomic dataset
- transform reads to coverage genomic dataset
- transform reads to feature genomic dataset
- transform reads to fragment genomic dataset
- transform reads to genotype genomic dataset
loading /tmp/adamTestMvnhgcACDR/TempSuite8573542290634909333.adam as parquet into RDD...
loading /tmp/adamTestMvnhgcACDR/TempSuite33584293136114176.adam as parquet into RDD...
- transform reads to variant genomic dataset
- cannot have a null processing step ID
- convert a processing description to htsjdk
- GenomicDataset.sort does not fail on unmapped reads
- GenomicDataset.sortLexicographically does not fail on unmapped reads
- left normalize indels
- running base recalibration with downsampling doesn't drop reads
- filter RDD bound alignments by MAPQ
- filter dataset bound alignments by MAPQ
- filter RDD bound unaligned alignments
- filter dataset bound unaligned alignments
- filter RDD bound unpaired alignments
- filter dataset bound unpaired alignments
- filter RDD bound duplicate alignments
- filter dataset bound duplicate alignments
- filter RDD bound alignments to primary alignments
- filter dataset bound alignments to primary alignments
- filter RDD bound alignments to read group
- filter dataset bound alignments to read group
- filter RDD bound alignments to read groups
- filter dataset bound alignments to read groups
- filter RDD bound alignments to sample
- filter dataset bound alignments to sample
- filter RDD bound alignments to samples
- filter dataset bound alignments to samples
- sort by read name
- transform dataset via java API
- convert alignments to reads
SmithWatermanSuite:
- gather max position from simple scoring matrix
- gather max position from irregular scoring matrix
- gather max position from irregular scoring matrix with deletions
- score simple alignment with constant gap
- score irregular scoring matrix
- score irregular scoring matrix with indel
- can unroll cigars correctly
- execute simple trackback
- execute trackback with indel
- run end to end smith waterman for simple reads
- run end to end smith waterman for short sequences with indel
- run end to end smith waterman for longer sequences with snp
- run end to end smith waterman for longer sequences with short indel
- run end to end smith waterman for shorter sequence in longer sequence
- run end to end smith waterman for shorter sequence in longer sequence, with indel
- smithWaterman - simple alignment
MdTagSuite:
- null md tag
- zero length md tag
- md tag with non-digit initial value
- md tag invalid base
- md tag, pure insertion
- md tag, pure insertion, test 2
- md tag pure insertion equality
- md tag equality and hashcode
- valid md tags
- get start of read with no mismatches or deletions
- get start of read with no mismatches, but with a deletion at the start
- get start of read with mismatches at the start
- get end of read with no mismatches or deletions
- check that mdtag and rich record return same end
- get end of read with no mismatches, but a deletion at end
- CIGAR with N operator
- CIGAR with multiple N operators
- CIGAR with P operators
- Get correct matches for mdtag with insertion
- Get correct matches for mdtag with mismatches and insertion
- Get correct matches for mdtag with insertion between mismatches
- Get correct matches for mdtag with intron between mismatches
- Get correct matches for mdtag with intron and deletion between mismatches
- Throw exception when number of deleted bases in mdtag disagrees with CIGAR
- Get correct matches for mdtag with mismatch, insertion and deletion
- Get correct matches for mdtag with mismatches, insertion and deletion
- Get correct matches for MDTag with mismatches and deletions
- Get correct matches base from MDTag and CIGAR with N
- get end of read with mismatches and a deletion at end
- get correct string out of mdtag with no mismatches
- get correct string out of mdtag with mismatches at start
- get correct string out of mdtag with deletion at end
- get correct string out of mdtag with mismatches at end
- get correct string out of complex mdtag
- check complex mdtag
- get gapped reference
- move a cigar alignment by two for a read
- rewrite alignment to all matches
- rewrite alignment to two mismatches followed by all matches
- rewrite alignment to include a deletion but otherwise all matches
- rewrite alignment to include an insertion at the start of the read but otherwise all matches
- create new md tag from read vs. reference, perfect match
- create new md tag from read vs. reference, perfect alignment match, 1 mismatch
- create new md tag from read vs. reference, alignment with deletion
- create new md tag from read vs. reference, alignment with insert
- handle '=' and 'X' operators
- CIGAR/MD tag mismatch should cause errors
GenomicDatasetSuite:
- processing a command that is the spark root directory should return an absolute path
- processing a command that is just a single word should do nothing
- processing a command should handle arguments that include spaces
- processing a command that is a single substitution should succeed
- processing a command that is multiple words should split the string
- process a command that is multiple words with a replacement
- process a command that is multiple words with multiple replacements
ParallelFileMergerSuite:
- cannot write both empty gzip block and cram eof
- buffer size must be non-negative
- get the size of several files
- block size must be positive and non-zero when trying to merge files
- must provide files to merge
- if two files are both below the block size, they should merge into one shard
- merge two files where one is greater than the block size
- merge a sharded sam file
- merge a sharded bam file
- merge a sharded cram file
- can't turn a negative index into a path
- generate a path from an index
IndelTableSuite:
- check for indels in a region with known indels
- check for indels in a contig that doesn't exist
- check for indels in a region without known indels
- build indel table from rdd of variants
SnpTableSuite:
- create an empty snp table
- create a snp table from variants on multiple contigs
- create a snp table from a larger set of variants
- perform lookups on multi-contig snp table
- perform lookups on larger snp table
RealignIndelsSuite:
- map reads to targets
- checking mapping to targets for artificial reads
- checking alternative consensus for artificial reads
- checking extraction of reference from reads
- checking realigned reads for artificial input
- checking realigned reads for artificial input with reference file
- checking realigned reads for artificial input using knowns
- checking realigned reads for artificial input using knowns and reads
- skip realigning reads if target is highly covered
- skip realignment if target is an insufficient LOD improvement
- realign reads to an insertion
- test mismatch quality scoring
- test mismatch quality scoring for no mismatches
- test mismatch quality scoring for offset
- test mismatch quality scoring with early exit
- test mismatch quality scoring after unpacking read
- we shouldn't try to realign a region with no target
- we shouldn't try to realign reads with no indel evidence
- test OP and OC tags
- realign a read with an insertion that goes off the end of the read
- if realigning a target doesn't improve the LOD, don't drop reads
- extract seq/qual from a read with no clipped bases
- extract seq/qual from a read with clipped bases at start
- extract seq/qual from a read with clipped bases at end
- if unclip is selected, don't drop base when extracting from a read with clipped bases
- get cigar and coordinates for read that spans indel, no clipped bases
- get cigar and coordinates for read that spans deletion, clipped bases at start
- get cigar and coordinates for read that falls wholly before insertion
- get cigar and coordinates for read that falls wholly after insertion
- get cigar and coordinates for read that falls wholly after deletion
- get cigar and coordinates for read that partially spans insertion, no clipped bases
- get cigar and coordinates for read that partially spans insertion, clipped bases at end
- get cigar and coordinates for read that partially spans insertion, clipped bases both ends
BaseQualityRecalibrationSuite:
- BQSR Test Input #1 w/ VCF Sites without caching
- BQSR Test Input #1 w/ VCF Sites with caching
- BQSR Test Input #1 w/ VCF Sites with serialized caching
DinucCovariateSuite:
- computing dinucleotide pairs for a single base sequence should return (N,N)
- compute dinucleotide pairs for a string of all valid bases
- compute dinucleotide pairs for a string with an N
- compute covariates for a read on the negative strand
- compute covariates for a read on the positive strand
SequenceDictionarySuite:
- Convert from sam sequence record and back
- Convert from SAM sequence dictionary file (with extra fields)
- merge into existing dictionary
- Convert from SAM sequence dictionary and back
- Can retrieve sequence by name
- SequenceDictionary's with same single element are equal
- SequenceDictionary's with same two elements are equals
- SequenceDictionary's with different elements are unequal
- SequenceDictionaries with same elements in different order are compatible
- isCompatible tests equality on overlap
- The addition + works correctly
- The append operation ++ works correctly
- ContainsRefName works correctly for different string types
- Apply on name works correctly for different String types
- convert from sam sequence record and back
- convert from sam sequence dictionary and back
- conversion to sam sequence dictionary has correct sort order
- load sequence dictionary from VCF file
- empty sequence dictionary must be empty
- test filter to reference name
- test filter to reference names
- test filter to reference name by function
GenomicPositionPartitionerSuite:
- partitions the UNMAPPED ReferencePosition into the top partition
- if we do not have a contig for a record, we throw an IAE
- partitioning into N pieces on M total sequence length, where N > M, results in M partitions
- correctly partitions a single dummy sequence into two pieces
- correctly counts cumulative lengths
- correctly partitions positions across two dummy sequences
- test that we can range partition ADAMRecords
- test that we can range partition ADAMRecords indexed by sample
- test that simple partitioning works okay on a reasonable set of ADAMRecords
- test indexed ReferencePosition partitioning works on a set of indexed ADAMRecords
CoverageSuite:
- Convert to coverage from valid Feature
- Convert to coverage from valid Feature with sampleId
- Convert to coverage from Feature with null/empty contigName fails with correct error
- Convert to coverage from Feature with no start/end position fails with correct error
- Convert to coverage from Feature with no score fails with correct error
InnerTreeRegionJoinSuite:
- Ensure same reference regions get passed together
- Overlapping reference regions
- Multiple reference regions do not throw exception
VariantDatasetSuite:
- union two variant genomic datasets together
- round trip to parquet
- save and reload from partitioned parquet
- use broadcast join to pull down variants mapped to targets
- use right outer broadcast join to pull down variants mapped to targets
- use shuffle join to pull down variants mapped to targets
- use right outer shuffle join to pull down variants mapped to targets
- use left outer shuffle join to pull down variants mapped to targets
- use full outer shuffle join to pull down variants mapped to targets
- use shuffle join with group by to pull down variants mapped to targets
- use right outer shuffle join with group by to pull down variants mapped to targets
- convert back to variant contexts
- load parquet to sql, save, re-read from avro
2019-12-01 13:39:33 WARN  DatasetBoundSliceDataset:190 - Saving directly as Parquet from SQL. Options other than compression codec are ignored.
- transform variants to slice genomic dataset
- transform variants to coverage genomic dataset
- transform variants to feature genomic dataset
- transform variants to fragment genomic dataset
- transform variants to read genomic dataset
- transform variants to genotype genomic dataset
- transform variants to variant context genomic dataset
- filter RDD bound variants to filters passed
- filter dataset bound variants to filters passed
- filter RDD bound variants by quality
- filter dataset bound variants by quality
- filter RDD bound variants by read depth
- filter dataset bound variants by read depth
- filter RDD bound variants by reference read depth
- filter dataset bound variants by reference read depth
- filter RDD bound single nucleotide variants
- filter dataset bound single nucleotide variants
- filter RDD bound multiple nucleotide variants
- filter dataset bound multiple nucleotide variants
- filter RDD bound indel variants
- filter dataset bound indel variants
- filter RDD bound variants to single nucleotide variants
- filter dataset bound variants to single nucleotide variants
- filter RDD bound variants to multiple nucleotide variants
- filter dataset bound variants to multiple nucleotide variants
- filter RDD bound variants to indel variants
- filter dataset bound variants to indel variants
- transform dataset via java API
Run completed in 7 minutes, 27 seconds.
Total number of tests run: 1175
Suites: completed 68, aborted 0
Tests: succeeded 1175, failed 0, canceled 0, ignored 5, pending 0
All tests passed.
[INFO] 
[INFO] <<< scoverage-maven-plugin:1.1.1:report (default-cli) < [scoverage]test @ adam-core-spark2_2.11 <<<
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:report (default-cli) @ adam-core-spark2_2.11 ---
[INFO] [scoverage] Generating cobertura XML report...
[INFO] [scoverage] Generating scoverage XML report...
[INFO] [scoverage] Generating scoverage HTML report...
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ADAM_2.11: APIs for Java, Python 0.30.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-apis-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-apis-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-apis-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-apis-spark2_2.11 ---
[INFO] Modified 0 of 5 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-apis-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-apis-spark2_2.11 ---
[INFO] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/src/main/scala:-1: info: compiling
[INFO] Compiling 4 source files to /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/target/2.11.12/classes at 1575236395792
[WARNING] warning: there were two feature warnings; re-run with -feature for details
[WARNING] one warning found
[INFO] prepare-compile in 0 s
[INFO] compile in 5 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-apis-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-apis-spark2_2.11 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-apis-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 2 resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-apis-spark2_2.11 ---
[INFO] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/src/test/java:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/src/test/scala:-1: info: compiling
[INFO] Compiling 9 source files to /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/target/2.11.12/test-classes at 1575236401408
[INFO] prepare-compile in 0 s
[INFO] compile in 4 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-apis-spark2_2.11 ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 8 source files to /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/target/2.11.12/test-classes
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-apis-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-apis-spark2_2.11 ---
Discovery starting.
Discovery completed in 184 milliseconds.
Run starting. Expected test count is: 10
JavaADAMContextSuite:
2019-12-01 13:40:07 WARN  Utils:66 - Your hostname, amp-jenkins-staging-worker-02 resolves to a loopback address: 127.0.1.1; using 192.168.10.32 instead (on interface eno1)
2019-12-01 13:40:07 WARN  Utils:66 - Set SPARK_LOCAL_IP if you need to bind to another address
2019-12-01 13:40:07 WARN  NativeCodeLoader:62 - Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
- can read and write a small .SAM file
- loadIndexedBam with multiple ReferenceRegions
- can read and write a small .SAM file as fragments
- can read and write a small .bed file as features
- can read and write a small .bed file as coverage
- can read and write a small .vcf as genotypes
- can read and write a small .vcf as variants
- can read a two bit file
2019-12-01 13:40:17 WARN  RDDBoundSequenceDataset:190 - asSingleFile = true ignored when saving as Parquet.
- can read and write .fa as sequences
2019-12-01 13:40:18 WARN  RDDBoundSliceDataset:190 - asSingleFile = true ignored when saving as Parquet.
- can read and write .fa as slices
Run completed in 11 seconds, 313 milliseconds.
Total number of tests run: 10
Suites: completed 2, aborted 0
Tests: succeeded 10, failed 0, canceled 0, ignored 0, pending 0
All tests passed.
[INFO] 
[INFO] >>> scoverage-maven-plugin:1.1.1:report (default-cli) > [scoverage]test @ adam-apis-spark2_2.11 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-apis-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-apis-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-apis-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-apis-spark2_2.11 ---
[INFO] Modified 0 of 5 .scala files
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:pre-compile (default-cli) @ adam-apis-spark2_2.11 ---
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-apis-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-apis-spark2_2.11 ---
[INFO] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/src/main/scala:-1: info: compiling
[INFO] Compiling 4 source files to /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/target/2.11.12/scoverage-classes at 1575236419112
[INFO] [info] Cleaning datadir [/home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/target/scoverage-data]
[INFO] [info] Beginning coverage instrumentation
[INFO] [info] Instrumentation completed [265 statements]
[INFO] [info] Wrote instrumentation file [/home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/target/scoverage-data/scoverage.coverage.xml]
[INFO] [info] Will write measurement data to [/home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/target/scoverage-data]
[WARNING] warning: there were two feature warnings; re-run with -feature for details
[WARNING] one warning found
[INFO] prepare-compile in 0 s
[INFO] compile in 5 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-apis-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:post-compile (default-cli) @ adam-apis-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-apis-spark2_2.11 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-apis-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 2 resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-apis-spark2_2.11 ---
[INFO] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/src/test/java:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/src/test/scala:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/target/generated-test-sources/test-annotations:-1: info: compiling
[INFO] Compiling 9 source files to /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/target/2.11.12/test-classes at 1575236425117
[INFO] prepare-compile in 0 s
[INFO] compile in 4 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-apis-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-apis-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-apis-spark2_2.11 ---
Discovery starting.
Discovery completed in 268 milliseconds.
Run starting. Expected test count is: 10
JavaADAMContextSuite:
2019-12-01 13:40:31 WARN  Utils:66 - Your hostname, amp-jenkins-staging-worker-02 resolves to a loopback address: 127.0.1.1; using 192.168.10.32 instead (on interface eno1)
2019-12-01 13:40:31 WARN  Utils:66 - Set SPARK_LOCAL_IP if you need to bind to another address
2019-12-01 13:40:31 WARN  NativeCodeLoader:62 - Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
- can read and write a small .SAM file
- loadIndexedBam with multiple ReferenceRegions
- can read and write a small .SAM file as fragments
- can read and write a small .bed file as features
- can read and write a small .bed file as coverage
- can read and write a small .vcf as genotypes
- can read and write a small .vcf as variants
- can read a two bit file
2019-12-01 13:40:43 WARN  RDDBoundSequenceDataset:190 - asSingleFile = true ignored when saving as Parquet.
- can read and write .fa as sequences
2019-12-01 13:40:44 WARN  RDDBoundSliceDataset:190 - asSingleFile = true ignored when saving as Parquet.
- can read and write .fa as slices
Run completed in 14 seconds, 558 milliseconds.
Total number of tests run: 10
Suites: completed 2, aborted 0
Tests: succeeded 10, failed 0, canceled 0, ignored 0, pending 0
All tests passed.
[INFO] 
[INFO] <<< scoverage-maven-plugin:1.1.1:report (default-cli) < [scoverage]test @ adam-apis-spark2_2.11 <<<
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:report (default-cli) @ adam-apis-spark2_2.11 ---
[INFO] [scoverage] Generating cobertura XML report...
[INFO] [scoverage] Generating scoverage XML report...
[INFO] [scoverage] Generating scoverage HTML report...
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ADAM_2.11: CLI 0.30.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-cli-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-cli-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:timestamp-property (timestamp-property) @ adam-cli-spark2_2.11 ---
[INFO] 
[INFO] --- git-commit-id-plugin:2.2.2:revision (default) @ adam-cli-spark2_2.11 ---
[INFO] 
[INFO] --- templating-maven-plugin:1.0.0:filter-sources (filter-src) @ adam-cli-spark2_2.11 ---
[INFO] Coping files with filtering to temporary directory.
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 1 resource
[INFO] Copied 1 files to output directory: /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/generated-sources/java-templates
[INFO] Source directory: /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/generated-sources/java-templates added.
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-cli-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-cli-spark2_2.11 ---
[INFO] Modified 0 of 29 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-cli-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-cli-spark2_2.11 ---
[INFO] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/generated-sources/java-templates:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/src/main/scala:-1: info: compiling
[INFO] Compiling 18 source files to /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/2.11.12/classes at 1575236446921
[WARNING] warning: there was one deprecation warning; re-run with -deprecation for details
[WARNING] one warning found
[INFO] prepare-compile in 0 s
[INFO] compile in 8 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-cli-spark2_2.11 ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 1 source file to /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/2.11.12/classes
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-cli-spark2_2.11 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-cli-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 15 resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-cli-spark2_2.11 ---
[INFO] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/src/test/scala:-1: info: compiling
[INFO] Compiling 12 source files to /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/2.11.12/test-classes at 1575236456025
[INFO] prepare-compile in 0 s
[INFO] compile in 7 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-cli-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-cli-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-cli-spark2_2.11 ---
Discovery starting.
Discovery completed in 276 milliseconds.
Run starting. Expected test count is: 44
TransformFeaturesSuite:
2019-12-01 13:41:04 WARN  Utils:66 - Your hostname, amp-jenkins-staging-worker-02 resolves to a loopback address: 127.0.1.1; using 192.168.10.32 instead (on interface eno1)
2019-12-01 13:41:04 WARN  Utils:66 - Set SPARK_LOCAL_IP if you need to bind to another address
2019-12-01 13:41:04 WARN  NativeCodeLoader:62 - Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
- can convert a simple BED file
TransformVariantsSuite:
- save a file sorted by contig index
- save a lexicographically sorted file
ViewSuite:
- -f 0 -F 0 is a no-op
- no -f or -F args is a no-op
- -f 4: only unmapped reads
- -F 4: only mapped reads
- -f 4 -F 8: unmapped reads with mapped mates
- -f 12: unmapped reads with unmapped mates
- -g 12: reads that are unmapped or whose mate is unmapped
- -F 12: mapped reads with mapped mates
- -g 36: unmapped reads or reads with mate on negative strand
- -F 36: unmapped reads or reads with mate on negative strand
TransformFragmentsSuite:
- load queryname sorted sam and save as parquet
- cannot sort if not saving as sam
2019-12-01 13:41:18 WARN  TransformFragments:190 - If loading and saving as alignments, consider using TransformAlignments instead
- load reads as sam and save them sorted
- bin quality scores on reads
TransformGenotypesSuite:
- save a file sorted by contig index
- save a lexicographically sorted file
- transform VCF without nested annotations
- transform VCF with nested annotations
AboutSuite:
- template variables have been replaced
- templated values are not empty
CoverageSuite:
- correctly calculates coverage from small sam file
MergeShardsSuite:
- merge shards from unordered sam to unordered sam
- unordered sam to ordered sam
- merge sharded bam
- merge sharded cram
TransformAlignmentsSuite:
- unordered sam to unordered sam
- unordered sam to ordered sam
- unordered sam, to adam, to sam
- unordered sam, to adam, to ordered sam
- put quality scores into bins
- run region predicate
ADAMMainSuite:
- default command groups is non empty
- module provides default command groups
- inject default command groups when called via main
- command groups is empty when called via apply
- single command group
- add new command group to default command groups
- module restores default command groups when called via apply
- custom module with single command group
- custom module with new command group added to default command groups
Adam2FastqSuite:
2019-12-01 13:41:30 WARN  RDDBoundAlignmentDataset:190 - Found 16 read names that don't occur exactly twice:
	1x:	16

Samples:
	SRR062634.16445865
	SRR062634.9119161
	SRR062634.17190076
	SRR062634.17969132
	SRR062634.7301099
	SRR062634.2087100
	SRR062634.20911784
	SRR062634.16769670
	SRR062634.18958430
	SRR062634.12099057
	SRR062634.12606172
	SRR062634.14985224
	SRR062634.10448889
	SRR062634.4789722
	SRR062634.3203184
	SRR062634.17698657
- convert SAM to paired FASTQ
Run completed in 28 seconds, 84 milliseconds.
Total number of tests run: 44
Suites: completed 12, aborted 0
Tests: succeeded 44, failed 0, canceled 0, ignored 0, pending 0
All tests passed.
[INFO] 
[INFO] >>> scoverage-maven-plugin:1.1.1:report (default-cli) > [scoverage]test @ adam-cli-spark2_2.11 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-cli-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-cli-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:timestamp-property (timestamp-property) @ adam-cli-spark2_2.11 ---
[INFO] 
[INFO] --- git-commit-id-plugin:2.2.2:revision (default) @ adam-cli-spark2_2.11 ---
[INFO] 
[INFO] --- templating-maven-plugin:1.0.0:filter-sources (filter-src) @ adam-cli-spark2_2.11 ---
[INFO] Coping files with filtering to temporary directory.
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 1 resource
[INFO] No files needs to be copied to output directory. Up to date: /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/generated-sources/java-templates
[INFO] Source directory: /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/generated-sources/java-templates added.
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-cli-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-cli-spark2_2.11 ---
[INFO] Modified 0 of 29 .scala files
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:pre-compile (default-cli) @ adam-cli-spark2_2.11 ---
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-cli-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-cli-spark2_2.11 ---
[INFO] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/generated-sources/java-templates:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/src/main/scala:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/generated-sources/annotations:-1: info: compiling
[INFO] Compiling 18 source files to /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/2.11.12/scoverage-classes at 1575236492579
[INFO] [info] Cleaning datadir [/home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/scoverage-data]
[INFO] [info] Beginning coverage instrumentation
[INFO] [info] Instrumentation completed [1468 statements]
[INFO] [info] Wrote instrumentation file [/home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/scoverage-data/scoverage.coverage.xml]
[INFO] [info] Will write measurement data to [/home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/scoverage-data]
[WARNING] warning: there was one deprecation warning; re-run with -deprecation for details
[WARNING] one warning found
[INFO] prepare-compile in 0 s
[INFO] compile in 9 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-cli-spark2_2.11 ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 1 source file to /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/2.11.12/scoverage-classes
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:post-compile (default-cli) @ adam-cli-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-cli-spark2_2.11 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-cli-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 15 resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-cli-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-cli-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-cli-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-cli-spark2_2.11 ---
Discovery starting.
Discovery completed in 225 milliseconds.
Run starting. Expected test count is: 44
TransformFeaturesSuite:
2019-12-01 13:41:43 WARN  Utils:66 - Your hostname, amp-jenkins-staging-worker-02 resolves to a loopback address: 127.0.1.1; using 192.168.10.32 instead (on interface eno1)
2019-12-01 13:41:43 WARN  Utils:66 - Set SPARK_LOCAL_IP if you need to bind to another address
2019-12-01 13:41:43 WARN  NativeCodeLoader:62 - Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
- can convert a simple BED file
TransformVariantsSuite:
- save a file sorted by contig index
- save a lexicographically sorted file
ViewSuite:
- -f 0 -F 0 is a no-op
- no -f or -F args is a no-op
- -f 4: only unmapped reads
- -F 4: only mapped reads
- -f 4 -F 8: unmapped reads with mapped mates
- -f 12: unmapped reads with unmapped mates
- -g 12: reads that are unmapped or whose mate is unmapped
- -F 12: mapped reads with mapped mates
- -g 36: unmapped reads or reads with mate on negative strand
- -F 36: unmapped reads or reads with mate on negative strand
TransformFragmentsSuite:
- load queryname sorted sam and save as parquet
- cannot sort if not saving as sam
2019-12-01 13:41:58 WARN  TransformFragments:190 - If loading and saving as alignments, consider using TransformAlignments instead
- load reads as sam and save them sorted
- bin quality scores on reads
TransformGenotypesSuite:
- save a file sorted by contig index
- save a lexicographically sorted file
- transform VCF without nested annotations
- transform VCF with nested annotations
AboutSuite:
- template variables have been replaced
- templated values are not empty
CoverageSuite:
- correctly calculates coverage from small sam file
MergeShardsSuite:
- merge shards from unordered sam to unordered sam
- unordered sam to ordered sam
- merge sharded bam
- merge sharded cram
TransformAlignmentsSuite:
- unordered sam to unordered sam
- unordered sam to ordered sam
- unordered sam, to adam, to sam
- unordered sam, to adam, to ordered sam
- put quality scores into bins
- run region predicate
ADAMMainSuite:
- default command groups is non empty
- module provides default command groups
- inject default command groups when called via main
- command groups is empty when called via apply
- single command group
- add new command group to default command groups
- module restores default command groups when called via apply
- custom module with single command group
- custom module with new command group added to default command groups
Adam2FastqSuite:
2019-12-01 13:42:12 WARN  RDDBoundAlignmentDataset:190 - Found 16 read names that don't occur exactly twice:
	1x:	16

Samples:
	SRR062634.16445865
	SRR062634.9119161
	SRR062634.17190076
	SRR062634.17969132
	SRR062634.7301099
	SRR062634.2087100
	SRR062634.20911784
	SRR062634.16769670
	SRR062634.18958430
	SRR062634.12099057
	SRR062634.12606172
	SRR062634.14985224
	SRR062634.10448889
	SRR062634.4789722
	SRR062634.3203184
	SRR062634.17698657
- convert SAM to paired FASTQ
Run completed in 30 seconds, 351 milliseconds.
Total number of tests run: 44
Suites: completed 12, aborted 0
Tests: succeeded 44, failed 0, canceled 0, ignored 0, pending 0
All tests passed.
[INFO] 
[INFO] <<< scoverage-maven-plugin:1.1.1:report (default-cli) < [scoverage]test @ adam-cli-spark2_2.11 <<<
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:report (default-cli) @ adam-cli-spark2_2.11 ---
[INFO] [scoverage] Generating cobertura XML report...
[INFO] [scoverage] Generating scoverage XML report...
[INFO] [scoverage] Generating scoverage HTML report...
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ADAM_2.11: Assembly 0.30.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-assembly-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-assembly-spark2_2.11 ---
[INFO] 
[INFO] --- git-commit-id-plugin:2.2.2:revision (default) @ adam-assembly-spark2_2.11 ---
[INFO] 
[INFO] --- templating-maven-plugin:1.0.0:filter-sources (filter-src) @ adam-assembly-spark2_2.11 ---
[INFO] Request to add '/home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/src/main/java-templates' folder. Not added since it does not exist.
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-assembly-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-assembly-spark2_2.11 ---
[INFO] Modified 0 of 1 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-assembly-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-assembly-spark2_2.11 ---
[INFO] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/src/main/scala:-1: info: compiling
[INFO] Compiling 1 source files to /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/target/2.11.12/classes at 1575236534467
[INFO] prepare-compile in 0 s
[INFO] compile in 1 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-assembly-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-assembly-spark2_2.11 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-assembly-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/src/test/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-assembly-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-assembly-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-assembly-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] >>> scoverage-maven-plugin:1.1.1:report (default-cli) > [scoverage]test @ adam-assembly-spark2_2.11 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-assembly-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-assembly-spark2_2.11 ---
[INFO] 
[INFO] --- git-commit-id-plugin:2.2.2:revision (default) @ adam-assembly-spark2_2.11 ---
[INFO] 
[INFO] --- templating-maven-plugin:1.0.0:filter-sources (filter-src) @ adam-assembly-spark2_2.11 ---
[INFO] Request to add '/home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/src/main/java-templates' folder. Not added since it does not exist.
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-assembly-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-assembly-spark2_2.11 ---
[INFO] Modified 0 of 1 .scala files
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:pre-compile (default-cli) @ adam-assembly-spark2_2.11 ---
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-assembly-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-assembly-spark2_2.11 ---
[INFO] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/src/main/scala:-1: info: compiling
[INFO] Compiling 1 source files to /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/target/2.11.12/scoverage-classes at 1575236536356
[INFO] [info] Cleaning datadir [/home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/target/scoverage-data]
[INFO] [info] Beginning coverage instrumentation
[INFO] [info] Instrumentation completed [0 statements]
[INFO] [info] Wrote instrumentation file [/home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/target/scoverage-data/scoverage.coverage.xml]
[INFO] [info] Will write measurement data to [/home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/target/scoverage-data]
[INFO] prepare-compile in 0 s
[INFO] compile in 2 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-assembly-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:post-compile (default-cli) @ adam-assembly-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-assembly-spark2_2.11 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-assembly-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/src/test/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-assembly-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-assembly-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-assembly-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] <<< scoverage-maven-plugin:1.1.1:report (default-cli) < [scoverage]test @ adam-assembly-spark2_2.11 <<<
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:report (default-cli) @ adam-assembly-spark2_2.11 ---
[INFO] [scoverage] Generating cobertura XML report...
[INFO] [scoverage] Generating scoverage XML report...
[INFO] [scoverage] Generating scoverage HTML report...
[INFO] [scoverage] Generating aggregated cobertura XML report...
[INFO] [scoverage] Generating aggregated scoverage XML report...
[INFO] [scoverage] Generating aggregated scoverage HTML report...
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO] 
[INFO] ADAM_2.11 .......................................... SUCCESS [ 10.826 s]
[INFO] ADAM_2.11: Shader workaround ....................... SUCCESS [  5.062 s]
[INFO] ADAM_2.11: Avro-to-Dataset codegen utils ........... SUCCESS [  9.391 s]
[INFO] ADAM_2.11: Core .................................... SUCCESS [16:38 min]
[INFO] ADAM_2.11: APIs for Java, Python ................... SUCCESS [ 50.298 s]
[INFO] ADAM_2.11: CLI ..................................... SUCCESS [01:27 min]
[INFO] ADAM_2.11: Assembly ................................ SUCCESS [ 10.081 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESS
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 19:32 min
[INFO] Finished at: 2019-12-01T13:42:23-08:00
[INFO] Final Memory: 97M/1482M
[INFO] ------------------------------------------------------------------------

# if those pass, build the distribution package
mvn -U \
    -P distribution \
    package \
    -DskipTests \
    -Dhadoop.version=${HADOOP_VERSION} \
    -DargLine=${ADAM_MVN_TMP_DIR}
+ mvn -U -P distribution package -DskipTests -Dhadoop.version=2.7.5 -DargLine=/tmp/adamTestMvnhgcACDR
Java HotSpot(TM) 64-Bit Server VM warning: ignoring option MaxPermSize=1g; support was removed in 8.0
[INFO] Scanning for projects...
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Build Order:
[INFO] 
[INFO] ADAM_2.11
[INFO] ADAM_2.11: Shader workaround
[INFO] ADAM_2.11: Avro-to-Dataset codegen utils
[INFO] ADAM_2.11: Core
[INFO] ADAM_2.11: APIs for Java, Python
[INFO] ADAM_2.11: CLI
[INFO] ADAM_2.11: Assembly
[INFO] ADAM_2.11: Distribution
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ADAM_2.11 0.30.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-parent-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-parent-spark2_2.11 ---
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-parent-spark2_2.11 ---
[INFO] Modified 0 of 243 .scala files
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-parent-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-parent-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-source-plugin:3.0.1:jar-no-fork (attach-sources) @ adam-parent-spark2_2.11 ---
[INFO] 
[INFO] --- maven-javadoc-plugin:3.1.0:jar (attach-javadoc) @ adam-parent-spark2_2.11 ---
[INFO] 
[INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ adam-parent-spark2_2.11 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-parent-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-parent-spark2_2.11 ---
[INFO] 
[INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ adam-parent-spark2_2.11 <<<
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ adam-parent-spark2_2.11 ---
[INFO] No source files found
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ADAM_2.11: Shader workaround 0.30.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-shade-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-shade-spark2_2.11 ---
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-shade-spark2_2.11 ---
[INFO] Modified 0 of 0 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-shade-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-shade-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-shade-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- plexus-component-metadata:1.5.5:generate-metadata (default) @ adam-shade-spark2_2.11 ---
[INFO] Discovered 1 component descriptors(s)
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-shade-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/src/test/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-shade-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-shade-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-shade-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ adam-shade-spark2_2.11 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/target/adam-shade-spark2_2.11-0.30.0-SNAPSHOT.jar
[INFO] 
[INFO] --- maven-source-plugin:3.0.1:jar-no-fork (attach-sources) @ adam-shade-spark2_2.11 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/target/adam-shade-spark2_2.11-0.30.0-SNAPSHOT-sources.jar
[INFO] 
[INFO] --- maven-javadoc-plugin:3.1.0:jar (attach-javadoc) @ adam-shade-spark2_2.11 ---
[INFO] 
Loading source files for package org.bdgenomics.adam.shade...
Constructing Javadoc information...
Standard Doclet version 1.8.0_191
Building tree for all the packages and classes...
Generating /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/target/apidocs/org/bdgenomics/adam/shade/ParquetAvroWorkaroundShader.html...
Generating /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/target/apidocs/org/bdgenomics/adam/shade/package-frame.html...
Generating /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/target/apidocs/org/bdgenomics/adam/shade/package-summary.html...
Generating /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/target/apidocs/org/bdgenomics/adam/shade/package-tree.html...
Generating /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/target/apidocs/constant-values.html...
Generating /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/target/apidocs/org/bdgenomics/adam/shade/class-use/ParquetAvroWorkaroundShader.html...
Generating /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/target/apidocs/org/bdgenomics/adam/shade/package-use.html...
Building index for all the packages and classes...
Generating /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/target/apidocs/overview-tree.html...
Generating /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/target/apidocs/index-all.html...
Generating /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/target/apidocs/deprecated-list.html...
Building index for all classes...
Generating /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/target/apidocs/allclasses-frame.html...
Generating /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/target/apidocs/allclasses-noframe.html...
Generating /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/target/apidocs/index.html...
Generating /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/target/apidocs/help-doc.html...
[INFO] Building jar: /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/target/adam-shade-spark2_2.11-0.30.0-SNAPSHOT-javadoc.jar
[INFO] 
[INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ adam-shade-spark2_2.11 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-shade-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-shade-spark2_2.11 ---
[INFO] 
[INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ adam-shade-spark2_2.11 <<<
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ adam-shade-spark2_2.11 ---
model contains 6 documentable templates
[INFO] Building jar: /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-shade/target/adam-shade-spark2_2.11-0.30.0-SNAPSHOT-javadoc.jar
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ADAM_2.11: Avro-to-Dataset codegen utils 0.30.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-codegen-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-codegen-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-codegen-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-codegen-spark2_2.11 ---
[INFO] Modified 0 of 4 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-codegen-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-codegen-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-codegen-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-codegen-spark2_2.11 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-codegen-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/src/test/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-codegen-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-codegen-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-codegen-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-codegen-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ adam-codegen-spark2_2.11 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/target/adam-codegen-spark2_2.11-0.30.0-SNAPSHOT.jar
[INFO] 
[INFO] --- maven-source-plugin:3.0.1:jar-no-fork (attach-sources) @ adam-codegen-spark2_2.11 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/target/adam-codegen-spark2_2.11-0.30.0-SNAPSHOT-sources.jar
[INFO] 
[INFO] --- maven-javadoc-plugin:3.1.0:jar (attach-javadoc) @ adam-codegen-spark2_2.11 ---
[INFO] 
[INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ adam-codegen-spark2_2.11 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-codegen-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-codegen-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-codegen-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/src/main/scala added.
[INFO] 
[INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ adam-codegen-spark2_2.11 <<<
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ adam-codegen-spark2_2.11 ---
model contains 11 documentable templates
[INFO] Building jar: /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/target/adam-codegen-spark2_2.11-0.30.0-SNAPSHOT-javadoc.jar
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ADAM_2.11: Core 0.30.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
Downloading: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/bdg-formats/bdg-formats/0.15.0-SNAPSHOT/maven-metadata.xml
793/793 B   
            
Downloaded: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/bdg-formats/bdg-formats/0.15.0-SNAPSHOT/maven-metadata.xml (793 B at 1.3 KB/sec)
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-core-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-core-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-core-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala added.
[INFO] Source directory: /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/generated-sources/src/main/scala added.
[INFO] 
[INFO] --- exec-maven-plugin:1.5.0:java (generate-scala-products) @ adam-core-spark2_2.11 ---
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] 
[INFO] --- exec-maven-plugin:1.5.0:java (generate-scala-projection-fields) @ adam-core-spark2_2.11 ---
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-core-spark2_2.11 ---
[INFO] Modified 2 of 203 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-core-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-core-spark2_2.11 ---
[INFO] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/java:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/generated-sources/src/main/scala:-1: info: compiling
[INFO] Compiling 139 source files to /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/2.11.12/classes at 1575236569262
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicDataset.scala:3099: warning: no valid targets for annotation on value uTag - it is discarded unused. You may specify targets with meta-annotations, e.g. @(transient @getter)
[WARNING]   @transient val uTag: TypeTag[U]
[WARNING]    ^
[WARNING] warning: there were 89 deprecation warnings; re-run with -deprecation for details
[WARNING] warning: there were 5 feature warnings; re-run with -feature for details
[WARNING] three warnings found
[INFO] prepare-compile in 0 s
[INFO] compile in 32 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-core-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-core-spark2_2.11 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-core-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 152 resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-core-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-core-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-core-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-core-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ adam-core-spark2_2.11 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/adam-core-spark2_2.11-0.30.0-SNAPSHOT.jar
[INFO] 
[INFO] --- maven-source-plugin:3.0.1:jar-no-fork (attach-sources) @ adam-core-spark2_2.11 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/adam-core-spark2_2.11-0.30.0-SNAPSHOT-sources.jar
[INFO] 
[INFO] --- maven-javadoc-plugin:3.1.0:jar (attach-javadoc) @ adam-core-spark2_2.11 ---
[INFO] The goal 'org.apache.maven.plugins:maven-javadoc-plugin:3.1.0:javadoc' has not been previously called for the module: 'org.bdgenomics.adam:adam-codegen-spark2_2.11:jar:0.30.0-SNAPSHOT'. Trying to invoke it...
Java HotSpot(TM) 64-Bit Server VM warning: ignoring option MaxPermSize=1g; support was removed in 8.0
[WARNING] Creating fake javadoc directory to prevent repeated invocations: /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/target/apidocs
[ERROR] Error fetching link: /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-codegen/target/apidocs. Ignored it.
[INFO] 
Loading source files for package org.apache.parquet.avro...
Loading source files for package org.bdgenomics.adam.io...
Constructing Javadoc information...
Standard Doclet version 1.8.0_191
Building tree for all the packages and classes...
Generating /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/org/apache/parquet/avro/AvroSchemaConverter.html...
Generating /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/FastqInputFormat.html...
Generating /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/FastqRecordReader.html...
Generating /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/InterleavedFastqInputFormat.html...
Generating /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/SingleFastqInputFormat.html...
Generating /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/overview-frame.html...
Generating /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/org/apache/parquet/avro/package-frame.html...
Generating /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/org/apache/parquet/avro/package-summary.html...
Generating /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/org/apache/parquet/avro/package-tree.html...
Generating /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/package-frame.html...
Generating /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/package-summary.html...
Generating /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/package-tree.html...
Generating /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/constant-values.html...
Generating /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/org/apache/parquet/avro/class-use/AvroSchemaConverter.html...
Generating /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/class-use/SingleFastqInputFormat.html...
Generating /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/class-use/FastqRecordReader.html...
Generating /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/class-use/FastqInputFormat.html...
Generating /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/class-use/InterleavedFastqInputFormat.html...
Generating /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/org/apache/parquet/avro/package-use.html...
Generating /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/package-use.html...
Building index for all the packages and classes...
Generating /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/overview-tree.html...
Generating /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/index-all.html...
Generating /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/deprecated-list.html...
Building index for all classes...
Generating /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/allclasses-frame.html...
Generating /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/allclasses-noframe.html...
Generating /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/index.html...
Generating /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/overview-summary.html...
Generating /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/apidocs/help-doc.html...
6 warnings
[WARNING] Javadoc Warnings
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/java/org/bdgenomics/adam/io/FastqRecordReader.java:235: warning: no @param for codec
[WARNING] protected final int positionAtFirstRecord(final FSDataInputStream stream,
[WARNING] ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/java/org/bdgenomics/adam/io/FastqRecordReader.java:235: warning: no @return
[WARNING] protected final int positionAtFirstRecord(final FSDataInputStream stream,
[WARNING] ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/java/org/bdgenomics/adam/io/FastqRecordReader.java:235: warning: no @throws for java.io.IOException
[WARNING] protected final int positionAtFirstRecord(final FSDataInputStream stream,
[WARNING] ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/java/org/bdgenomics/adam/io/FastqRecordReader.java:389: warning: no @throws for java.io.IOException
[WARNING] protected final boolean lowLevelFastqRead(final Text readName, final Text value)
[WARNING] ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/java/org/bdgenomics/adam/io/FastqRecordReader.java:431: warning: no @throws for java.io.IOException
[WARNING] abstract protected boolean next(Text value) throws IOException;
[WARNING] ^
[WARNING] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/java/org/bdgenomics/adam/io/FastqRecordReader.java:154: warning: no @throws for java.io.IOException
[WARNING] protected FastqRecordReader(final Configuration conf,
[WARNING] ^
[INFO] Building jar: /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/adam-core-spark2_2.11-0.30.0-SNAPSHOT-javadoc.jar
[INFO] 
[INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ adam-core-spark2_2.11 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-core-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-core-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-core-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala added.
[INFO] Source directory: /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/generated-sources/src/main/scala added.
[INFO] 
[INFO] --- exec-maven-plugin:1.5.0:java (generate-scala-products) @ adam-core-spark2_2.11 ---
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] 
[INFO] --- exec-maven-plugin:1.5.0:java (generate-scala-projection-fields) @ adam-core-spark2_2.11 ---
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] 
[INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ adam-core-spark2_2.11 <<<
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ adam-core-spark2_2.11 ---
/home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverters.scala:274: warning: discarding unmoored doc comment
    /**
    ^
/home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentDataset.scala:844: warning: Octal escape literals are deprecated, use \u0001 instead.
      binaryCodec.writeBytes("BAM\001".getBytes())
                                 ^
/home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rich/RichCigar.scala:43: warning: discarding unmoored doc comment
    /**
    ^
/home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicDataset.scala:3099: warning: no valid targets for annotation on value uTag - it is discarded unused. You may specify targets with meta-annotations, e.g. @(transient @getter)
  @transient val uTag: TypeTag[U]
   ^
warning: there were 5 feature warnings; re-run with -feature for details
model contains 291 documentable templates
/home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/util/AttributeUtils.scala:70: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
/home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/projections/Projection.scala:45: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
/home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala:1815: warning: Could not find any member to link for "FileNotFoundException".
  /**
  ^
/home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala:1844: warning: Could not find any member to link for "FileNotFoundException".
  /**
  ^
/home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala:1864: warning: Could not find any member to link for "FileNotFoundException".
  /**
  ^
/home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicPartitioners.scala:75: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
/home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicPartitioners.scala:178: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
/home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala:474: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
/home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala:3491: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
/home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala:429: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
/home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicDataset.scala:755: warning: Variable x undefined in comment for method pipe in trait GenomicDataset
   * Files are substituted in to the command with a $x syntax. E.g., to invoke
                                                     ^
/home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicDataset.scala:756: warning: Variable 0 undefined in comment for method pipe in trait GenomicDataset
   * a command that uses the first file from the files Seq, use $0. To access
                                                                 ^
/home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicDataset.scala:757: warning: Variable root undefined in comment for method pipe in trait GenomicDataset
   * the path to the directory where the files are copied, use $root.
                                                                ^
/home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/models/ReadGroupDictionary.scala:47: warning: Could not find any member to link for "IllegalArgumentException".
/**
^
/home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/models/Alphabet.scala:44: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
/home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala:258: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
/home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala:242: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
/home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala:444: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
/home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala:354: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
24 warnings found
[INFO] Building jar: /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/adam-core-spark2_2.11-0.30.0-SNAPSHOT-javadoc.jar
[INFO] 
[INFO] --- maven-jar-plugin:3.2.0:test-jar (default) @ adam-core-spark2_2.11 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-core/target/adam-core-spark2_2.11-0.30.0-SNAPSHOT-tests.jar
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ADAM_2.11: APIs for Java, Python 0.30.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-apis-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-apis-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-apis-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-apis-spark2_2.11 ---
[INFO] Modified 0 of 5 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-apis-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-apis-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-apis-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-apis-spark2_2.11 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-apis-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 2 resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-apis-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-apis-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-apis-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-apis-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ adam-apis-spark2_2.11 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/target/adam-apis-spark2_2.11-0.30.0-SNAPSHOT.jar
[INFO] 
[INFO] --- maven-source-plugin:3.0.1:jar-no-fork (attach-sources) @ adam-apis-spark2_2.11 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/target/adam-apis-spark2_2.11-0.30.0-SNAPSHOT-sources.jar
[INFO] 
[INFO] --- maven-javadoc-plugin:3.1.0:jar (attach-javadoc) @ adam-apis-spark2_2.11 ---
[INFO] 
[INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ adam-apis-spark2_2.11 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-apis-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-apis-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-apis-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/src/main/scala added.
[INFO] 
[INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ adam-apis-spark2_2.11 <<<
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ adam-apis-spark2_2.11 ---
warning: there were two feature warnings; re-run with -feature for details
model contains 192 documentable templates
one warning found
[INFO] Building jar: /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/target/adam-apis-spark2_2.11-0.30.0-SNAPSHOT-javadoc.jar
[INFO] 
[INFO] --- maven-jar-plugin:3.2.0:test-jar (default) @ adam-apis-spark2_2.11 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/target/adam-apis-spark2_2.11-0.30.0-SNAPSHOT-tests.jar
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ADAM_2.11: CLI 0.30.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-cli-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-cli-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:timestamp-property (timestamp-property) @ adam-cli-spark2_2.11 ---
[INFO] 
[INFO] --- git-commit-id-plugin:2.2.2:revision (default) @ adam-cli-spark2_2.11 ---
[INFO] 
[INFO] --- templating-maven-plugin:1.0.0:filter-sources (filter-src) @ adam-cli-spark2_2.11 ---
[INFO] Coping files with filtering to temporary directory.
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 1 resource
[INFO] No files needs to be copied to output directory. Up to date: /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/generated-sources/java-templates
[INFO] Source directory: /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/generated-sources/java-templates added.
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-cli-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-cli-spark2_2.11 ---
[INFO] Modified 0 of 29 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-cli-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-cli-spark2_2.11 ---
[INFO] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/generated-sources/java-templates:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/src/main/scala:-1: info: compiling
[INFO] Compiling 18 source files to /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/2.11.12/classes at 1575236649526
[WARNING] warning: there was one deprecation warning; re-run with -deprecation for details
[WARNING] one warning found
[INFO] prepare-compile in 0 s
[INFO] compile in 8 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-cli-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-cli-spark2_2.11 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-cli-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 15 resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-cli-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-cli-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-cli-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-cli-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ adam-cli-spark2_2.11 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/adam-cli-spark2_2.11-0.30.0-SNAPSHOT.jar
[INFO] 
[INFO] --- maven-source-plugin:3.0.1:jar-no-fork (attach-sources) @ adam-cli-spark2_2.11 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/adam-cli-spark2_2.11-0.30.0-SNAPSHOT-sources.jar
[INFO] 
[INFO] --- maven-javadoc-plugin:3.1.0:jar (attach-javadoc) @ adam-cli-spark2_2.11 ---
[INFO] The goal 'org.apache.maven.plugins:maven-javadoc-plugin:3.1.0:javadoc' has not been previously called for the module: 'org.bdgenomics.adam:adam-apis-spark2_2.11:jar:0.30.0-SNAPSHOT'. Trying to invoke it...
Java HotSpot(TM) 64-Bit Server VM warning: ignoring option MaxPermSize=1g; support was removed in 8.0
[WARNING] Creating fake javadoc directory to prevent repeated invocations: /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/target/apidocs
[ERROR] Error fetching link: /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-apis/target/apidocs. Ignored it.
[INFO] 
Loading source files for package org.bdgenomics.adam.cli...
Constructing Javadoc information...
Standard Doclet version 1.8.0_191
Building tree for all the packages and classes...
Generating /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/apidocs/org/bdgenomics/adam/cli/About.html...
Generating /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/apidocs/org/bdgenomics/adam/cli/package-frame.html...
Generating /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/apidocs/org/bdgenomics/adam/cli/package-summary.html...
Generating /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/apidocs/org/bdgenomics/adam/cli/package-tree.html...
Generating /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/apidocs/constant-values.html...
Generating /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/apidocs/org/bdgenomics/adam/cli/class-use/About.html...
Generating /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/apidocs/org/bdgenomics/adam/cli/package-use.html...
Building index for all the packages and classes...
Generating /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/apidocs/overview-tree.html...
Generating /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/apidocs/index-all.html...
Generating /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/apidocs/deprecated-list.html...
Building index for all classes...
Generating /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/apidocs/allclasses-frame.html...
Generating /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/apidocs/allclasses-noframe.html...
Generating /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/apidocs/index.html...
Generating /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/apidocs/help-doc.html...
[INFO] Building jar: /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/adam-cli-spark2_2.11-0.30.0-SNAPSHOT-javadoc.jar
[INFO] 
[INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ adam-cli-spark2_2.11 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-cli-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-cli-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:timestamp-property (timestamp-property) @ adam-cli-spark2_2.11 ---
[INFO] 
[INFO] --- git-commit-id-plugin:2.2.2:revision (default) @ adam-cli-spark2_2.11 ---
[INFO] 
[INFO] --- templating-maven-plugin:1.0.0:filter-sources (filter-src) @ adam-cli-spark2_2.11 ---
[INFO] Coping files with filtering to temporary directory.
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 1 resource
[INFO] No files needs to be copied to output directory. Up to date: /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/generated-sources/java-templates
[INFO] Source directory: /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/generated-sources/java-templates added.
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-cli-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/src/main/scala added.
[INFO] 
[INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ adam-cli-spark2_2.11 <<<
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ adam-cli-spark2_2.11 ---
model contains 55 documentable templates
[INFO] Building jar: /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-cli/target/adam-cli-spark2_2.11-0.30.0-SNAPSHOT-javadoc.jar
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ADAM_2.11: Assembly 0.30.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-assembly-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-assembly-spark2_2.11 ---
[INFO] 
[INFO] --- git-commit-id-plugin:2.2.2:revision (default) @ adam-assembly-spark2_2.11 ---
[INFO] 
[INFO] --- templating-maven-plugin:1.0.0:filter-sources (filter-src) @ adam-assembly-spark2_2.11 ---
[INFO] Request to add '/home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/src/main/java-templates' folder. Not added since it does not exist.
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-assembly-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-assembly-spark2_2.11 ---
[INFO] Modified 0 of 1 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-assembly-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-assembly-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-assembly-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-assembly-spark2_2.11 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-assembly-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/src/test/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-assembly-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-assembly-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-assembly-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ adam-assembly-spark2_2.11 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/target/adam-assembly-spark2_2.11-0.30.0-SNAPSHOT.jar
[INFO] 
[INFO] --- maven-source-plugin:3.0.1:jar-no-fork (attach-sources) @ adam-assembly-spark2_2.11 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/target/adam-assembly-spark2_2.11-0.30.0-SNAPSHOT-sources.jar
[INFO] 
[INFO] --- maven-javadoc-plugin:3.1.0:jar (attach-javadoc) @ adam-assembly-spark2_2.11 ---
[INFO] 
[INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ adam-assembly-spark2_2.11 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-assembly-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-assembly-spark2_2.11 ---
[INFO] 
[INFO] --- git-commit-id-plugin:2.2.2:revision (default) @ adam-assembly-spark2_2.11 ---
[INFO] 
[INFO] --- templating-maven-plugin:1.0.0:filter-sources (filter-src) @ adam-assembly-spark2_2.11 ---
[INFO] Request to add '/home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/src/main/java-templates' folder. Not added since it does not exist.
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-assembly-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/src/main/scala added.
[INFO] 
[INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ adam-assembly-spark2_2.11 <<<
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ adam-assembly-spark2_2.11 ---
model contains 6 documentable templates
[INFO] Building jar: /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/target/adam-assembly-spark2_2.11-0.30.0-SNAPSHOT-javadoc.jar
[INFO] 
[INFO] --- maven-shade-plugin:3.2.0:shade (default) @ adam-assembly-spark2_2.11 ---
[INFO] Including org.bdgenomics.adam:adam-cli-spark2_2.11:jar:0.30.0-SNAPSHOT in the shaded jar.
[INFO] Including org.bdgenomics.utils:utils-misc-spark2_2.11:jar:0.2.15 in the shaded jar.
[INFO] Including org.bdgenomics.utils:utils-io-spark2_2.11:jar:0.2.15 in the shaded jar.
[INFO] Including org.apache.httpcomponents:httpclient:jar:4.5.7 in the shaded jar.
[INFO] Including org.apache.httpcomponents:httpcore:jar:4.4.11 in the shaded jar.
[INFO] Including commons-logging:commons-logging:jar:1.2 in the shaded jar.
[INFO] Including commons-codec:commons-codec:jar:1.11 in the shaded jar.
[INFO] Including org.bdgenomics.utils:utils-cli-spark2_2.11:jar:0.2.15 in the shaded jar.
[INFO] Including org.clapper:grizzled-slf4j_2.11:jar:1.3.3 in the shaded jar.
[INFO] Including org.apache.parquet:parquet-avro:jar:1.10.1 in the shaded jar.
[INFO] Including org.apache.parquet:parquet-column:jar:1.10.1 in the shaded jar.
[INFO] Including org.apache.parquet:parquet-common:jar:1.10.1 in the shaded jar.
[INFO] Including org.apache.parquet:parquet-encoding:jar:1.10.1 in the shaded jar.
[INFO] Including org.apache.parquet:parquet-hadoop:jar:1.10.1 in the shaded jar.
[INFO] Including org.apache.parquet:parquet-jackson:jar:1.10.1 in the shaded jar.
[INFO] Including commons-pool:commons-pool:jar:1.6 in the shaded jar.
[INFO] Including org.apache.parquet:parquet-format:jar:2.4.0 in the shaded jar.
[INFO] Including org.bdgenomics.utils:utils-metrics-spark2_2.11:jar:0.2.15 in the shaded jar.
[INFO] Including com.netflix.servo:servo-core:jar:0.12.25 in the shaded jar.
[INFO] Including com.netflix.spectator:spectator-api:jar:0.67.0 in the shaded jar.
[INFO] Including org.slf4j:slf4j-api:jar:1.7.25 in the shaded jar.
[INFO] Including org.bdgenomics.bdg-formats:bdg-formats:jar:0.15.0-SNAPSHOT in the shaded jar.
[INFO] Including org.apache.avro:avro:jar:1.8.2 in the shaded jar.
[INFO] Including org.codehaus.jackson:jackson-core-asl:jar:1.9.13 in the shaded jar.
[INFO] Including org.codehaus.jackson:jackson-mapper-asl:jar:1.9.13 in the shaded jar.
[INFO] Including com.thoughtworks.paranamer:paranamer:jar:2.8 in the shaded jar.
[INFO] Including org.xerial.snappy:snappy-java:jar:1.1.1.3 in the shaded jar.
[INFO] Including org.apache.commons:commons-compress:jar:1.8.1 in the shaded jar.
[INFO] Including org.tukaani:xz:jar:1.5 in the shaded jar.
[INFO] Including org.bdgenomics.adam:adam-core-spark2_2.11:jar:0.30.0-SNAPSHOT in the shaded jar.
[INFO] Including org.bdgenomics.utils:utils-intervalrdd-spark2_2.11:jar:0.2.15 in the shaded jar.
[INFO] Including com.esotericsoftware.kryo:kryo:jar:2.24.0 in the shaded jar.
[INFO] Including com.esotericsoftware.minlog:minlog:jar:1.2 in the shaded jar.
[INFO] Including org.objenesis:objenesis:jar:2.1 in the shaded jar.
[INFO] Including commons-io:commons-io:jar:2.6 in the shaded jar.
[INFO] Including it.unimi.dsi:fastutil:jar:6.6.5 in the shaded jar.
[INFO] Including org.seqdoop:hadoop-bam:jar:7.9.2 in the shaded jar.
[INFO] Including com.github.jsr203hadoop:jsr203hadoop:jar:1.0.3 in the shaded jar.
[INFO] Including com.github.samtools:htsjdk:jar:2.19.0 in the shaded jar.
[INFO] Including org.apache.commons:commons-jexl:jar:2.1.1 in the shaded jar.
[INFO] Including gov.nih.nlm.ncbi:ngs-java:jar:2.9.0 in the shaded jar.
[INFO] Including com.google.guava:guava:jar:27.0-jre in the shaded jar.
[INFO] Including com.google.guava:failureaccess:jar:1.0 in the shaded jar.
[INFO] Including com.google.guava:listenablefuture:jar:9999.0-empty-to-avoid-conflict-with-guava in the shaded jar.
[INFO] Including org.checkerframework:checker-qual:jar:2.5.2 in the shaded jar.
[INFO] Including com.google.errorprone:error_prone_annotations:jar:2.2.0 in the shaded jar.
[INFO] Including com.google.j2objc:j2objc-annotations:jar:1.1 in the shaded jar.
[INFO] Including org.codehaus.mojo:animal-sniffer-annotations:jar:1.17 in the shaded jar.
[INFO] Including org.bdgenomics.adam:adam-codegen-spark2_2.11:jar:0.30.0-SNAPSHOT in the shaded jar.
[INFO] Including org.bdgenomics.adam:adam-apis-spark2_2.11:jar:0.30.0-SNAPSHOT in the shaded jar.
[INFO] Including args4j:args4j:jar:2.33 in the shaded jar.
[INFO] Including net.codingwell:scala-guice_2.11:jar:4.2.1 in the shaded jar.
[INFO] Including com.google.inject:guice:jar:4.2.0 in the shaded jar.
[INFO] Including javax.inject:javax.inject:jar:1 in the shaded jar.
[INFO] Including aopalliance:aopalliance:jar:1.0 in the shaded jar.
[INFO] Including org.scala-lang:scala-reflect:jar:2.11.12 in the shaded jar.
[INFO] Including com.google.code.findbugs:jsr305:jar:1.3.9 in the shaded jar.
[WARNING] WORKAROUND:  refusing to add class org/apache/parquet/avro/AvroSchemaConverter$2.class from jar /home/jenkins/.m2/repository/org/apache/parquet/parquet-avro/1.10.1/parquet-avro-1.10.1.jar
[WARNING] WORKAROUND:  refusing to add class org/apache/parquet/avro/AvroSchemaConverter.class from jar /home/jenkins/.m2/repository/org/apache/parquet/parquet-avro/1.10.1/parquet-avro-1.10.1.jar
[WARNING] WORKAROUND:  refusing to add class org/apache/parquet/avro/AvroSchemaConverter$1.class from jar /home/jenkins/.m2/repository/org/apache/parquet/parquet-avro/1.10.1/parquet-avro-1.10.1.jar
[WARNING] guava-27.0-jre.jar, failureaccess-1.0.jar define 2 overlapping classes: 
[WARNING]   - com.google.common.util.concurrent.internal.InternalFutureFailureAccess
[WARNING]   - com.google.common.util.concurrent.internal.InternalFutures
[WARNING] maven-shade-plugin has detected that some class files are
[WARNING] present in two or more JARs. When this happens, only one
[WARNING] single version of the class is copied to the uber jar.
[WARNING] Usually this is not harmful and you can skip these warnings,
[WARNING] otherwise try to manually exclude artifacts based on
[WARNING] mvn dependency:tree -Ddetail=true and the above output.
[WARNING] See http://maven.apache.org/plugins/maven-shade-plugin/
[INFO] Replacing original artifact with shaded artifact.
[INFO] Replacing /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/target/adam-assembly-spark2_2.11-0.30.0-SNAPSHOT.jar with /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-assembly/target/adam-assembly-spark2_2.11-0.30.0-SNAPSHOT-shaded.jar
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ADAM_2.11: Distribution 0.30.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-distribution-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-distribution-spark2_2.11 ---
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-distribution-spark2_2.11 ---
[INFO] Modified 0 of 0 .scala files
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-distribution-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-distribution-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-source-plugin:3.0.1:jar-no-fork (attach-sources) @ adam-distribution-spark2_2.11 ---
[INFO] 
[INFO] --- maven-javadoc-plugin:3.1.0:jar (attach-javadoc) @ adam-distribution-spark2_2.11 ---
[INFO] 
[INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ adam-distribution-spark2_2.11 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-distribution-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-distribution-spark2_2.11 ---
[INFO] 
[INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ adam-distribution-spark2_2.11 <<<
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ adam-distribution-spark2_2.11 ---
[INFO] No source files found
[INFO] 
[INFO] --- maven-assembly-plugin:3.2.0:single (default) @ adam-distribution-spark2_2.11 ---
[INFO] Reading assembly descriptor: src/main/assembly/assembly.xml
[INFO] Building tar: /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-distribution/target/adam-distribution-spark2_2.11-0.30.0-SNAPSHOT-bin.tar.gz
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/smithwaterman/ longer than 100 characters.
[WARNING] Resulting tar file can only be processed successfully by GNU compatible tar commands
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/apache/parquet/avro/AvroSchemaConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/AttributeUtils$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/FileExtensions$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/IndexedFastaFile.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/TextRddWriter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/GenomeFileReader$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ReferenceContigMapSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ParquetLogger$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/SequenceDictionaryReader$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ParquetFileTraversable.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ReferenceContigMap$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/TwoBitFileSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ReferenceContigMap.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/converters/AlignmentConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/converters/VariantContextConverter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/converters/VariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/converters/DefaultHeaderLines$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/io/FastqRecordReader.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/io/SingleFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/io/InterleavedFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/io/FastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantCallingAnnotations$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantAnnotation.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantAnnotation$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantContext$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantCallingAnnotations.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/TranscriptEffect.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/TranscriptEffect$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/ProcessingStep$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/VariantCallingAnnotationsField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/package.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FeatureField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/ReadField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FieldValue.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/SliceField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/TranscriptEffectField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/GenotypeField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FieldEnumeration.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/VariantField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/Projection$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/ReadGroupField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/ReferenceField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/SequenceField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/VariantAnnotationField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/OntologyTermField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/Filter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FieldEnumeration$SchemaVal.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/SampleField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/AlignmentField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FragmentField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/DbxrefField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InnerShuffleRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicPositionPartitioner.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InnerTreeRegionJoinAndGroupByRight.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/AvroReadGroupGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicRegionPartitioner$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicRegionPartitioner.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InFormatterCompanion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenericGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/ADAMVCFOutputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/ParquetUnboundVariantDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VariantDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/DatasetBoundGenotypeDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VariantContextDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VariantContextDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/package.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/GenotypeDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/ParquetUnboundGenotypeDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/DatasetBoundVariantContextDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VCFInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VCFInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/RDDBoundVariantContextDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VariantDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/RDDBoundVariantDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/GenotypeDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/RDDBoundGenotypeDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/DatasetBoundVariantDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VCFOutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/DatasetBoundGenericGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicBroadcast.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InnerTreeRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/NarrowPeakOutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GFF3InFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/package.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GTFInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/FeatureDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/NarrowPeakInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/ParquetUnboundFeatureDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/RDDBoundFeatureDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/BEDOutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GFF3InFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/DatasetBoundCoverageDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GTFInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/BEDInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/CoverageDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/BEDInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/NarrowPeakInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/ParquetUnboundCoverageDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GFF3OutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/CoverageDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GTFOutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/DatasetBoundFeatureDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/FeatureDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/RDDBoundCoverageDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/RightOuterTreeRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InnerShuffleRegionJoinAndGroupByLeft.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/RightOuterShuffleRegionJoinAndGroupByLeft.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/ShuffleRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/AvroGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/DatasetBoundGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenericConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/LeftOuterShuffleRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/FullOuterShuffleRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/MultisampleAvroGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/SequenceDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/RDDBoundSliceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/package.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/DatasetBoundSequenceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/FASTAInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/ParquetUnboundSliceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/DatasetBoundSliceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/SliceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/SliceDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/FASTAInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/SequenceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/ParquetUnboundSequenceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/RDDBoundSequenceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/RDDBoundGenericGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/ReferencePartitioner.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/MultisampleGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/RightOuterTreeRegionJoinAndGroupByRight.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/VictimlessSortedIntervalPartitionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicPositionPartitioner$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/LeftOuterShuffleRegionJoinAndGroupByLeft.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/InstrumentedADAMBAMOutputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/InstrumentedADAMSAMOutputFormatHeaderLess.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMSAMOutputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMCRAMOutputFormatHeaderLess.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ReferencePositionPairSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ParquetUnboundAlignmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/InstrumentedADAMSAMOutputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMSAMOutputFormatHeaderLess.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ReadDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AlignmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMBAMOutputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/RDDBoundReadDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/DatasetBoundAlignmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/InstrumentedADAMBAMOutputFormatHeaderLess.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMBAMOutputFormatHeaderLess.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/DatasetBoundReadDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AnySAMOutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/QualityScoreBin$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ReadDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/SAMInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/InstrumentedADAMCRAMOutputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/SAMInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/BAMInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMCRAMOutputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/FASTQInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/FASTQInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AlignmentDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AnySAMInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/QualityScoreBin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/RDDBoundAlignmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/BAMInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/InstrumentedADAMCRAMOutputFormatHeaderLess.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AnySAMInFormatterCompanion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/SingleReadBucketSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/IncorrectMDTagException.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ParquetUnboundReadDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/SortedIntervalPartitionJoinWithVictims.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/ADAMSaveAnyArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/Tab5InFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/ParquetUnboundFragmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/FragmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/package.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/Tab6InFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/RDDBoundFragmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/Tab6InFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/InterleavedFASTQInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/Tab5InFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/FragmentDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/DatasetBoundFragmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/InterleavedFASTQInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicDatasetWithLineage.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rich/RichAlignment$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/instrumentation/package.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/instrumentation/Timers$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/smithwaterman/package.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/smithwaterman/SmithWaterman.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/smithwaterman/SmithWatermanConstantGapScoring.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/consensus/package.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/consensus/ConsensusGenerator.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/consensus/ConsensusGenerator$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferencePosition$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/OptionalReferenceOrdering.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/TagType$$TypeVal.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferenceRegion$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferencePositionSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/SequenceDictionary.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/SequenceRecord$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReadGroupDictionary.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferenceRegionSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/OptionalPositionOrdering$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/PositionOrdering$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/VariantContext.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/VariantContext$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/SequenceDictionary$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferenceOrdering.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferenceRegion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/SequenceRecord.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/OptionalRegionOrdering$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReadGroupDictionary$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/RegionOrdering$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferencePosition.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/VariantContextSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/package.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/InputStreamWithDecoder.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/AvroSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/ADAMKryoRegistrator.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/WritableSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/javadocs/org/apache/parquet/avro/AvroSchemaConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/javadocs/org/apache/parquet/avro/class-use/AvroSchemaConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/FastqRecordReader.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/SingleFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/InterleavedFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/class-use/FastqRecordReader.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/class-use/SingleFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/class-use/InterleavedFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/class-use/FastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/python/DataFrameConversionWrapper.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToVariantContextsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToAlignmentDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToSequenceDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToCoverageDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToVariantContextDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToReadDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToVariantContextsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToGenotypeDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToSliceDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToFeatureConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/JavaADAMContext$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToFeatureDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToVariantDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToVariantContextsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToFragmentDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/JavaADAMContext.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSlices.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformGenotypes$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformGenotypesArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFeaturesArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformAlignments$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformVariantsArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformGenotypes.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSequences$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformVariants$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountSliceKmers$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFragments$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformAlignmentsArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFragments.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSequencesArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformAlignments.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFragmentsArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/MergeShardsArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformVariants.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountSliceKmers.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSlicesArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountSliceKmersArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountReadKmers$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSequences.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFeatures.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountReadKmersArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSlices$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFeatures$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/repo/adam-assembly-spark2_2.11-0.30.0-SNAPSHOT-javadoc.jar longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/repo/adam-assembly-spark2_2.11-0.30.0-SNAPSHOT-sources.jar longer than 100 characters.
[INFO] Building tar: /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-distribution/target/adam-distribution-spark2_2.11-0.30.0-SNAPSHOT-bin.tar.bz2
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/smithwaterman/ longer than 100 characters.
[WARNING] Resulting tar file can only be processed successfully by GNU compatible tar commands
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/apache/parquet/avro/AvroSchemaConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/AttributeUtils$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/FileExtensions$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/IndexedFastaFile.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/TextRddWriter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/GenomeFileReader$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ReferenceContigMapSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ParquetLogger$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/SequenceDictionaryReader$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ParquetFileTraversable.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ReferenceContigMap$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/TwoBitFileSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ReferenceContigMap.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/converters/AlignmentConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/converters/VariantContextConverter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/converters/VariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/converters/DefaultHeaderLines$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/io/FastqRecordReader.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/io/SingleFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/io/InterleavedFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/io/FastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantCallingAnnotations$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantAnnotation.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantAnnotation$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantContext$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantCallingAnnotations.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/TranscriptEffect.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/TranscriptEffect$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/ProcessingStep$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/VariantCallingAnnotationsField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/package.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FeatureField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/ReadField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FieldValue.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/SliceField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/TranscriptEffectField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/GenotypeField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FieldEnumeration.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/VariantField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/Projection$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/ReadGroupField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/ReferenceField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/SequenceField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/VariantAnnotationField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/OntologyTermField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/Filter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FieldEnumeration$SchemaVal.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/SampleField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/AlignmentField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FragmentField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/DbxrefField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InnerShuffleRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicPositionPartitioner.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InnerTreeRegionJoinAndGroupByRight.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/AvroReadGroupGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicRegionPartitioner$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicRegionPartitioner.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InFormatterCompanion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenericGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/ADAMVCFOutputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/ParquetUnboundVariantDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VariantDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/DatasetBoundGenotypeDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VariantContextDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VariantContextDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/package.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/GenotypeDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/ParquetUnboundGenotypeDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/DatasetBoundVariantContextDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VCFInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VCFInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/RDDBoundVariantContextDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VariantDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/RDDBoundVariantDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/GenotypeDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/RDDBoundGenotypeDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/DatasetBoundVariantDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VCFOutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/DatasetBoundGenericGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicBroadcast.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InnerTreeRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/NarrowPeakOutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GFF3InFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/package.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GTFInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/FeatureDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/NarrowPeakInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/ParquetUnboundFeatureDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/RDDBoundFeatureDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/BEDOutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GFF3InFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/DatasetBoundCoverageDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GTFInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/BEDInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/CoverageDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/BEDInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/NarrowPeakInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/ParquetUnboundCoverageDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GFF3OutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/CoverageDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GTFOutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/DatasetBoundFeatureDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/FeatureDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/RDDBoundCoverageDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/RightOuterTreeRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InnerShuffleRegionJoinAndGroupByLeft.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/RightOuterShuffleRegionJoinAndGroupByLeft.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/ShuffleRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/AvroGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/DatasetBoundGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenericConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/LeftOuterShuffleRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/FullOuterShuffleRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/MultisampleAvroGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/SequenceDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/RDDBoundSliceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/package.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/DatasetBoundSequenceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/FASTAInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/ParquetUnboundSliceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/DatasetBoundSliceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/SliceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/SliceDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/FASTAInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/SequenceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/ParquetUnboundSequenceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/RDDBoundSequenceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/RDDBoundGenericGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/ReferencePartitioner.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/MultisampleGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/RightOuterTreeRegionJoinAndGroupByRight.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/VictimlessSortedIntervalPartitionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicPositionPartitioner$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/LeftOuterShuffleRegionJoinAndGroupByLeft.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/InstrumentedADAMBAMOutputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/InstrumentedADAMSAMOutputFormatHeaderLess.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMSAMOutputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMCRAMOutputFormatHeaderLess.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ReferencePositionPairSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ParquetUnboundAlignmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/InstrumentedADAMSAMOutputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMSAMOutputFormatHeaderLess.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ReadDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AlignmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMBAMOutputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/RDDBoundReadDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/DatasetBoundAlignmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/InstrumentedADAMBAMOutputFormatHeaderLess.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMBAMOutputFormatHeaderLess.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/DatasetBoundReadDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AnySAMOutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/QualityScoreBin$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ReadDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/SAMInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/InstrumentedADAMCRAMOutputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/SAMInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/BAMInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMCRAMOutputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/FASTQInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/FASTQInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AlignmentDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AnySAMInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/QualityScoreBin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/RDDBoundAlignmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/BAMInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/InstrumentedADAMCRAMOutputFormatHeaderLess.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AnySAMInFormatterCompanion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/SingleReadBucketSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/IncorrectMDTagException.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ParquetUnboundReadDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/SortedIntervalPartitionJoinWithVictims.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/ADAMSaveAnyArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/Tab5InFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/ParquetUnboundFragmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/FragmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/package.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/Tab6InFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/RDDBoundFragmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/Tab6InFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/InterleavedFASTQInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/Tab5InFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/FragmentDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/DatasetBoundFragmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/InterleavedFASTQInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicDatasetWithLineage.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rich/RichAlignment$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/instrumentation/package.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/instrumentation/Timers$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/smithwaterman/package.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/smithwaterman/SmithWaterman.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/smithwaterman/SmithWatermanConstantGapScoring.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/consensus/package.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/consensus/ConsensusGenerator.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/consensus/ConsensusGenerator$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferencePosition$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/OptionalReferenceOrdering.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/TagType$$TypeVal.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferenceRegion$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferencePositionSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/SequenceDictionary.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/SequenceRecord$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReadGroupDictionary.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferenceRegionSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/OptionalPositionOrdering$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/PositionOrdering$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/VariantContext.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/VariantContext$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/SequenceDictionary$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferenceOrdering.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferenceRegion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/SequenceRecord.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/OptionalRegionOrdering$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReadGroupDictionary$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/RegionOrdering$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferencePosition.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/VariantContextSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/package.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/InputStreamWithDecoder.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/AvroSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/ADAMKryoRegistrator.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/WritableSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/javadocs/org/apache/parquet/avro/AvroSchemaConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/javadocs/org/apache/parquet/avro/class-use/AvroSchemaConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/FastqRecordReader.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/SingleFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/InterleavedFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/class-use/FastqRecordReader.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/class-use/SingleFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/class-use/InterleavedFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/class-use/FastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/python/DataFrameConversionWrapper.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToVariantContextsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToAlignmentDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToSequenceDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToCoverageDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToVariantContextDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToReadDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToVariantContextsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToGenotypeDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToSliceDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToFeatureConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/JavaADAMContext$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToFeatureDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToVariantDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToVariantContextsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToFragmentDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/JavaADAMContext.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSlices.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformGenotypes$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformGenotypesArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFeaturesArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformAlignments$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformVariantsArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformGenotypes.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSequences$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformVariants$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountSliceKmers$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFragments$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformAlignmentsArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFragments.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSequencesArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformAlignments.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFragmentsArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/MergeShardsArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformVariants.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountSliceKmers.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSlicesArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountSliceKmersArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountReadKmers$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSequences.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFeatures.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountReadKmersArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSlices$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFeatures$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/repo/adam-assembly-spark2_2.11-0.30.0-SNAPSHOT-javadoc.jar longer than 100 characters.
[WARNING] Entry: adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/repo/adam-assembly-spark2_2.11-0.30.0-SNAPSHOT-sources.jar longer than 100 characters.
[INFO] Building zip: /home/jenkins/workspace/ADAM/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.4.4/label/ubuntu/adam-distribution/target/adam-distribution-spark2_2.11-0.30.0-SNAPSHOT-bin.zip
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO] 
[INFO] ADAM_2.11 .......................................... SUCCESS [  7.188 s]
[INFO] ADAM_2.11: Shader workaround ....................... SUCCESS [  4.438 s]
[INFO] ADAM_2.11: Avro-to-Dataset codegen utils ........... SUCCESS [  3.766 s]
[INFO] ADAM_2.11: Core .................................... SUCCESS [01:19 min]
[INFO] ADAM_2.11: APIs for Java, Python ................... SUCCESS [  7.786 s]
[INFO] ADAM_2.11: CLI ..................................... SUCCESS [ 24.722 s]
[INFO] ADAM_2.11: Assembly ................................ SUCCESS [ 13.575 s]
[INFO] ADAM_2.11: Distribution ............................ SUCCESS [ 27.662 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESS
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 02:48 min
[INFO] Finished at: 2019-12-01T13:45:14-08:00
[INFO] Final Memory: 76M/1500M
[INFO] ------------------------------------------------------------------------

# make sure that the distribution package contains an assembly jar
# if no assembly jar is found, this will exit with code 1 and fail the build
tar tzvf adam-distribution/target/adam-distribution*-bin.tar.gz | \
    grep adam-assembly | \
    grep jar | \
    grep -v -e sources -e javadoc 
+ grep adam-assembly
+ tar tzvf adam-distribution/target/adam-distribution-spark2_2.11-0.30.0-SNAPSHOT-bin.tar.gz
+ grep jar
+ grep -v -e sources -e javadoc
-rw-r--r-- jenkins/jenkins 44559449 2019-12-01 13:44 adam-distribution-spark2_2.11-0.30.0-SNAPSHOT/repo/adam-assembly-spark2_2.11-0.30.0-SNAPSHOT.jar

# we are done with maven, so clean up the maven temp dir
find ${ADAM_MVN_TMP_DIR}
+ find /tmp/adamTestMvnhgcACDR
/tmp/adamTestMvnhgcACDR
/tmp/adamTestMvnhgcACDR/TempSuite6646904413480560893
/tmp/adamTestMvnhgcACDR/TempSuite8573542290634909333.adam
/tmp/adamTestMvnhgcACDR/TempSuite8573542290634909333.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite8573542290634909333.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite8573542290634909333.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite8573542290634909333.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite8573542290634909333.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite8573542290634909333.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite8573542290634909333.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite8573542290634909333.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite8573542290634909333.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite8573542290634909333.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite8573542290634909333.adam/._header.crc
/tmp/adamTestMvnhgcACDR/TempSuite8573542290634909333.adam/_header
/tmp/adamTestMvnhgcACDR/sample_coverage.bed6883945056395558051.bed
/tmp/adamTestMvnhgcACDR/bqsr14630540513526218801
/tmp/adamTestMvnhgcACDR/bqsr14630540513526218801/.bqsr1.sam.crc
/tmp/adamTestMvnhgcACDR/bqsr14630540513526218801/bqsr1.sam
/tmp/adamTestMvnhgcACDR/TempSuite5304471652523128413
/tmp/adamTestMvnhgcACDR/8310192327950803399
/tmp/adamTestMvnhgcACDR/8310192327950803399/tag.sam
/tmp/adamTestMvnhgcACDR/8310192327950803399/.tag.sam.crc
/tmp/adamTestMvnhgcACDR/TempSuite4080964054207122683.bam
/tmp/adamTestMvnhgcACDR/gencode.v7.annotation.trunc10.bed4656999105598655874.v7.annotation.trunc10.bed
/tmp/adamTestMvnhgcACDR/TempSuite4969828540389132024.adam
/tmp/adamTestMvnhgcACDR/TempSuite4969828540389132024.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite4969828540389132024.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite4969828540389132024.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite4969828540389132024.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite4969828540389132024.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite4969828540389132024.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite4969828540389132024.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite4969828540389132024.adam/_samples.avro
/tmp/adamTestMvnhgcACDR/TempSuite4969828540389132024.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite4969828540389132024.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite4969828540389132024.adam/._samples.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite4969828540389132024.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite4969828540389132024.adam/._header.crc
/tmp/adamTestMvnhgcACDR/TempSuite4969828540389132024.adam/_header
/tmp/adamTestMvnhgcACDR/TempSuite9106438726582490344_1.fq
/tmp/adamTestMvnhgcACDR/bqsr1.sam3868699651310308335.sam
/tmp/adamTestMvnhgcACDR/TempSuite5701187947227424387.adam
/tmp/adamTestMvnhgcACDR/TempSuite5701187947227424387.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite5701187947227424387.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite5701187947227424387.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite5701187947227424387.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/TempSuite5701187947227424387.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite5701187947227424387.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/TempSuite5701187947227424387.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite5701187947227424387.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite5701187947227424387.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite5701187947227424387.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite5701187947227424387.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite5701187947227424387.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite5701187947227424387.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite5701187947227424387.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite3950367810429257269.bed
/tmp/adamTestMvnhgcACDR/TempSuite3950367810429257269.bed/.part-00000.crc
/tmp/adamTestMvnhgcACDR/TempSuite3950367810429257269.bed/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite3950367810429257269.bed/part-00000
/tmp/adamTestMvnhgcACDR/TempSuite3950367810429257269.bed/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite8913541541862949439.gff3
/tmp/adamTestMvnhgcACDR/random.vcf7506597617896104662.vcf
/tmp/adamTestMvnhgcACDR/TempSuite5646473205670238179
/tmp/adamTestMvnhgcACDR/.TempSuite2092020424475632957.sam.crc
/tmp/adamTestMvnhgcACDR/TempSuite8539105514419765067.bed
/tmp/adamTestMvnhgcACDR/TempSuite8539105514419765067.bed/.part-00000.crc
/tmp/adamTestMvnhgcACDR/TempSuite8539105514419765067.bed/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite8539105514419765067.bed/part-00000
/tmp/adamTestMvnhgcACDR/TempSuite8539105514419765067.bed/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/unordered.sam3338425874606337809.sam
/tmp/adamTestMvnhgcACDR/TempSuite7640849667128596383.sam
/tmp/adamTestMvnhgcACDR/TempSuite7640849667128596383.sam/part-r-00000.sam
/tmp/adamTestMvnhgcACDR/TempSuite7640849667128596383.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnhgcACDR/TempSuite7640849667128596383.sam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite7640849667128596383.sam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite977385864267069468
/tmp/adamTestMvnhgcACDR/TempSuite6683260728251822125.adam
/tmp/adamTestMvnhgcACDR/TempSuite6683260728251822125.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite6683260728251822125.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite6683260728251822125.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite6683260728251822125.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/TempSuite6683260728251822125.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite6683260728251822125.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/TempSuite6683260728251822125.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite6683260728251822125.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite6683260728251822125.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite6683260728251822125.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite6683260728251822125.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite6683260728251822125.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite6683260728251822125.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite6683260728251822125.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite5771516497444113623.adam
/tmp/adamTestMvnhgcACDR/TempSuite5771516497444113623.adam/.part-00001-534f8859-1d45-4d49-b95d-84a47da9c400-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite5771516497444113623.adam/.part-00000-534f8859-1d45-4d49-b95d-84a47da9c400-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite5771516497444113623.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite5771516497444113623.adam/.part-00002-534f8859-1d45-4d49-b95d-84a47da9c400-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite5771516497444113623.adam/part-00001-534f8859-1d45-4d49-b95d-84a47da9c400-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite5771516497444113623.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite5771516497444113623.adam/part-00000-534f8859-1d45-4d49-b95d-84a47da9c400-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite5771516497444113623.adam/part-00002-534f8859-1d45-4d49-b95d-84a47da9c400-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite5771516497444113623.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite5771516497444113623.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite4999219286119950797
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite571316281174582336
/tmp/adamTestMvnhgcACDR/TempSuite8651330218980209382
/tmp/adamTestMvnhgcACDR/6781144344228624417
/tmp/adamTestMvnhgcACDR/6781144344228624417/genotypes.adam
/tmp/adamTestMvnhgcACDR/6781144344228624417/genotypes.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/6781144344228624417/genotypes.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/6781144344228624417/genotypes.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/6781144344228624417/genotypes.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/6781144344228624417/genotypes.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/6781144344228624417/genotypes.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/6781144344228624417/genotypes.adam/_references.avro
/tmp/adamTestMvnhgcACDR/6781144344228624417/genotypes.adam/_samples.avro
/tmp/adamTestMvnhgcACDR/6781144344228624417/genotypes.adam/_metadata
/tmp/adamTestMvnhgcACDR/6781144344228624417/genotypes.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/6781144344228624417/genotypes.adam/._samples.avro.crc
/tmp/adamTestMvnhgcACDR/6781144344228624417/genotypes.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/6781144344228624417/genotypes.adam/._header.crc
/tmp/adamTestMvnhgcACDR/6781144344228624417/genotypes.adam/_header
/tmp/adamTestMvnhgcACDR/TempSuite5235612161877637570.adam
/tmp/adamTestMvnhgcACDR/TempSuite5235612161877637570.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite5235612161877637570.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite5235612161877637570.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite5235612161877637570.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite5235612161877637570.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite5235612161877637570.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite5235612161877637570.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite5235612161877637570.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite5235612161877637570.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite5235612161877637570.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite5235612161877637570.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite5235612161877637570.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite5235612161877637570.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite5235612161877637570.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite5235612161877637570.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite5235612161877637570.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite5235612161877637570.adam/._header.crc
/tmp/adamTestMvnhgcACDR/TempSuite5235612161877637570.adam/_header
/tmp/adamTestMvnhgcACDR/TempSuite704399138746853997
/tmp/adamTestMvnhgcACDR/TempSuite2826047883863714865.adam
/tmp/adamTestMvnhgcACDR/TempSuite2826047883863714865.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite2826047883863714865.adam/.part-00000-09805b48-71fa-4803-8ce5-2b1acce532b4-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite2826047883863714865.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite2826047883863714865.adam/part-00000-09805b48-71fa-4803-8ce5-2b1acce532b4-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite2826047883863714865.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite2826047883863714865.adam/_samples.avro
/tmp/adamTestMvnhgcACDR/TempSuite2826047883863714865.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite2826047883863714865.adam/._samples.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite2826047883863714865.adam/._header.crc
/tmp/adamTestMvnhgcACDR/TempSuite2826047883863714865.adam/_header
/tmp/adamTestMvnhgcACDR/TempSuite4362685159680375134.bam
/tmp/adamTestMvnhgcACDR/TempSuite100045137112922472.adam
/tmp/adamTestMvnhgcACDR/TempSuite100045137112922472.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite100045137112922472.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite100045137112922472.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite100045137112922472.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite100045137112922472.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite100045137112922472.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite100045137112922472.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite100045137112922472.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite100045137112922472.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite100045137112922472.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite100045137112922472.adam/._header.crc
/tmp/adamTestMvnhgcACDR/TempSuite100045137112922472.adam/_header
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite789916828206143469.bed
/tmp/adamTestMvnhgcACDR/TempSuite760551532480998133
/tmp/adamTestMvnhgcACDR/TempSuite5771516497444113623
/tmp/adamTestMvnhgcACDR/TempSuite9144609809950214873.adam
/tmp/adamTestMvnhgcACDR/TempSuite9144609809950214873.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite9144609809950214873.adam/part-00005-c5f6e929-9c90-4fb4-8b02-01eabbd0ddcc-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite9144609809950214873.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite9144609809950214873.adam/.part-00005-c5f6e929-9c90-4fb4-8b02-01eabbd0ddcc-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite9144609809950214873.adam/part-00000-c5f6e929-9c90-4fb4-8b02-01eabbd0ddcc-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite9144609809950214873.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite9144609809950214873.adam/.part-00003-c5f6e929-9c90-4fb4-8b02-01eabbd0ddcc-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite9144609809950214873.adam/_samples.avro
/tmp/adamTestMvnhgcACDR/TempSuite9144609809950214873.adam/.part-00000-c5f6e929-9c90-4fb4-8b02-01eabbd0ddcc-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite9144609809950214873.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite9144609809950214873.adam/._samples.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite9144609809950214873.adam/part-00003-c5f6e929-9c90-4fb4-8b02-01eabbd0ddcc-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3926509868566513595
/tmp/adamTestMvnhgcACDR/TempSuite6860150568940967871
/tmp/adamTestMvnhgcACDR/TempSuite8723240986469453010
/tmp/adamTestMvnhgcACDR/TempSuite8028679938405519276
/tmp/adamTestMvnhgcACDR/TempSuite33584293136114176
/tmp/adamTestMvnhgcACDR/TempSuite7640849667128596383
/tmp/adamTestMvnhgcACDR/sorted-variants.vcf1197049040948307387.vcf
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite8962708845456965781.fasta
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite8962708845456965781.fasta/.part-00003.crc
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite8962708845456965781.fasta/.part-00000.crc
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite8962708845456965781.fasta/_SUCCESS
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite8962708845456965781.fasta/part-00003
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite8962708845456965781.fasta/part-00000
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite8962708845456965781.fasta/part-00002
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite8962708845456965781.fasta/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite8962708845456965781.fasta/.part-00002.crc
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite8962708845456965781.fasta/part-00001
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite8962708845456965781.fasta/.part-00001.crc
/tmp/adamTestMvnhgcACDR/TempSuite814942892234722587.adam
/tmp/adamTestMvnhgcACDR/TempSuite814942892234722587.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite814942892234722587.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite814942892234722587.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite814942892234722587.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite814942892234722587.adam/part-r-00004.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite814942892234722587.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite814942892234722587.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite814942892234722587.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite814942892234722587.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite814942892234722587.adam/.part-r-00004.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite814942892234722587.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite814942892234722587.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite814942892234722587.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite814942892234722587.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite814942892234722587.adam/_samples.avro
/tmp/adamTestMvnhgcACDR/TempSuite814942892234722587.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite814942892234722587.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite814942892234722587.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite814942892234722587.adam/._samples.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite814942892234722587.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite1975035396772562545.adam
/tmp/adamTestMvnhgcACDR/TempSuite1975035396772562545.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite1975035396772562545.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite1975035396772562545.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite1975035396772562545.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite1975035396772562545.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite1975035396772562545.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite1975035396772562545.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite1975035396772562545.adam/_samples.avro
/tmp/adamTestMvnhgcACDR/TempSuite1975035396772562545.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite1975035396772562545.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite1975035396772562545.adam/._samples.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite1975035396772562545.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite1975035396772562545.adam/._header.crc
/tmp/adamTestMvnhgcACDR/TempSuite1975035396772562545.adam/_header
/tmp/adamTestMvnhgcACDR/4585069127754689919
/tmp/adamTestMvnhgcACDR/4585069127754689919/.small.vcf.bgz.crc
/tmp/adamTestMvnhgcACDR/4585069127754689919/small.vcf.bgz
/tmp/adamTestMvnhgcACDR/TempSuite3221312276751774682
/tmp/adamTestMvnhgcACDR/TempSuite8893718127834013813
/tmp/adamTestMvnhgcACDR/TempSuite3320597633892843138
/tmp/adamTestMvnhgcACDR/TempSuite6683260728251822125
/tmp/adamTestMvnhgcACDR/reads2420060235244272979
/tmp/adamTestMvnhgcACDR/reads2420060235244272979/reads1.fq
/tmp/adamTestMvnhgcACDR/reads2420060235244272979/reads1.fq/.part-00000.crc
/tmp/adamTestMvnhgcACDR/reads2420060235244272979/reads1.fq/_SUCCESS
/tmp/adamTestMvnhgcACDR/reads2420060235244272979/reads1.fq/part-00000
/tmp/adamTestMvnhgcACDR/reads2420060235244272979/reads1.fq/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/reads2420060235244272979/reads2.fq
/tmp/adamTestMvnhgcACDR/reads2420060235244272979/reads2.fq/.part-00000.crc
/tmp/adamTestMvnhgcACDR/reads2420060235244272979/reads2.fq/_SUCCESS
/tmp/adamTestMvnhgcACDR/reads2420060235244272979/reads2.fq/part-00000
/tmp/adamTestMvnhgcACDR/reads2420060235244272979/reads2.fq/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite6812328422181758767
/tmp/adamTestMvnhgcACDR/TempSuite4555712074651646090.adam
/tmp/adamTestMvnhgcACDR/TempSuite4555712074651646090.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite4555712074651646090.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite4555712074651646090.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite4555712074651646090.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite4555712074651646090.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite4555712074651646090.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/TempSuite4555712074651646090.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite4555712074651646090.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/TempSuite4555712074651646090.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite4555712074651646090.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite4555712074651646090.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite4555712074651646090.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite4555712074651646090.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite4555712074651646090.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite4555712074651646090.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite4555712074651646090.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite4555712074651646090.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite4555712074651646090.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite4555712074651646090.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite4555712074651646090.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite9105440210336606322.bed
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite9105440210336606322.bed/.part-00003.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite9105440210336606322.bed/.part-00000.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite9105440210336606322.bed/_SUCCESS
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite9105440210336606322.bed/part-00003
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite9105440210336606322.bed/part-00000
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite9105440210336606322.bed/part-00002
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite9105440210336606322.bed/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite9105440210336606322.bed/.part-00002.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite9105440210336606322.bed/part-00001
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite9105440210336606322.bed/.part-00001.crc
/tmp/adamTestMvnhgcACDR/TempSuite646693193648727823.adam
/tmp/adamTestMvnhgcACDR/TempSuite646693193648727823.adam/.part-00000-32ddcc56-7358-41ac-882c-5f7abe309d5d-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite646693193648727823.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite646693193648727823.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite646693193648727823.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/TempSuite646693193648727823.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/TempSuite646693193648727823.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite646693193648727823.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite646693193648727823.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite646693193648727823.adam/part-00000-32ddcc56-7358-41ac-882c-5f7abe309d5d-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite646693193648727823.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite100045137112922472
/tmp/adamTestMvnhgcACDR/TempSuite3996892809156646782
/tmp/adamTestMvnhgcACDR/random.vcf2037555004740951068.vcf
/tmp/adamTestMvnhgcACDR/TempSuite6827886445101296297.bed
/tmp/adamTestMvnhgcACDR/TempSuite6827886445101296297.bed/.part-00000.crc
/tmp/adamTestMvnhgcACDR/TempSuite6827886445101296297.bed/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite6827886445101296297.bed/part-00000
/tmp/adamTestMvnhgcACDR/TempSuite6827886445101296297.bed/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite6015341696228394673
/tmp/adamTestMvnhgcACDR/TempSuite649360336804857421.sam
/tmp/adamTestMvnhgcACDR/TempSuite9004626246983172284
/tmp/adamTestMvnhgcACDR/1575235942779-0
/tmp/adamTestMvnhgcACDR/1575235942779-0/.test.gvcf.vcf.crc
/tmp/adamTestMvnhgcACDR/1575235942779-0/test.gvcf.vcf
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite8112301296591659090.narrowPeak
/tmp/adamTestMvnhgcACDR/5333984315061436564
/tmp/adamTestMvnhgcACDR/5333984315061436564/binned.adam
/tmp/adamTestMvnhgcACDR/5333984315061436564/binned.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/5333984315061436564/binned.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/5333984315061436564/binned.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/5333984315061436564/binned.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/5333984315061436564/binned.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/5333984315061436564/binned.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/5333984315061436564/binned.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/5333984315061436564/binned.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/5333984315061436564/binned.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/5333984315061436564/binned.adam/_references.avro
/tmp/adamTestMvnhgcACDR/5333984315061436564/binned.adam/_metadata
/tmp/adamTestMvnhgcACDR/5333984315061436564/binned.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/5333984315061436564/binned.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/5333984315061436564/binned.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite6959228433280579059
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite8371062153354782187
/tmp/adamTestMvnhgcACDR/TempSuite9200954415324538668.fq
/tmp/adamTestMvnhgcACDR/TempSuite9200954415324538668.fq/.part-00000.crc
/tmp/adamTestMvnhgcACDR/TempSuite9200954415324538668.fq/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite9200954415324538668.fq/part-00000
/tmp/adamTestMvnhgcACDR/TempSuite9200954415324538668.fq/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite3247025660867156709.adam
/tmp/adamTestMvnhgcACDR/TempSuite3247025660867156709.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite3247025660867156709.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite3247025660867156709.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite3247025660867156709.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite3247025660867156709.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite3247025660867156709.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite3247025660867156709.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite3247025660867156709.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite3247025660867156709.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite3247025660867156709.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite3247025660867156709.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite3247025660867156709.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite3247025660867156709.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite3247025660867156709.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite3247025660867156709.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite3247025660867156709.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite3247025660867156709.adam/._header.crc
/tmp/adamTestMvnhgcACDR/TempSuite3247025660867156709.adam/_header
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite3802607657297576319.fastq
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite6721161832124186894
/tmp/adamTestMvnhgcACDR/TempSuite4333979329693185338
/tmp/adamTestMvnhgcACDR/ordered.sam5537357842780315627.sam
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite8266439584075806539
/tmp/adamTestMvnhgcACDR/TempSuite1571504257594719775
/tmp/adamTestMvnhgcACDR/.FeatureDatasetFunctionsSuite5807430225199591214.interval_list.crc
/tmp/adamTestMvnhgcACDR/TempSuite7938874507666550735
/tmp/adamTestMvnhgcACDR/sample1.queryname.sam7002711580469174700.queryname.sam
/tmp/adamTestMvnhgcACDR/TempSuite3078297783586571336
/tmp/adamTestMvnhgcACDR/TempSuite9176178861946841489
/tmp/adamTestMvnhgcACDR/TempSuite7842518682276119227.sam
/tmp/adamTestMvnhgcACDR/trinity.fa5093801484209963557.fa
/tmp/adamTestMvnhgcACDR/TempSuite7124340649457538216
/tmp/adamTestMvnhgcACDR/TempSuite6784450754600280385
/tmp/adamTestMvnhgcACDR/TempSuite6118985928979154238
/tmp/adamTestMvnhgcACDR/TempSuite1348784608182402617
/tmp/adamTestMvnhgcACDR/TempSuite2838043165243634623.adam
/tmp/adamTestMvnhgcACDR/TempSuite2838043165243634623.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite2838043165243634623.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite2838043165243634623.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite2838043165243634623.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite2838043165243634623.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite2838043165243634623.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite2838043165243634623.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite2838043165243634623.adam/_samples.avro
/tmp/adamTestMvnhgcACDR/TempSuite2838043165243634623.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite2838043165243634623.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite2838043165243634623.adam/._samples.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite2838043165243634623.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite2838043165243634623.adam/._header.crc
/tmp/adamTestMvnhgcACDR/TempSuite2838043165243634623.adam/_header
/tmp/adamTestMvnhgcACDR/TempSuite9115056520247422398.adam
/tmp/adamTestMvnhgcACDR/TempSuite9115056520247422398.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite9115056520247422398.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite9115056520247422398.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite9115056520247422398.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/TempSuite9115056520247422398.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite9115056520247422398.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/TempSuite9115056520247422398.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite9115056520247422398.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite9115056520247422398.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite9115056520247422398.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite9115056520247422398.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite9115056520247422398.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite9115056520247422398.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite9115056520247422398.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite4481969272815945488.adam
/tmp/adamTestMvnhgcACDR/TempSuite4481969272815945488.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite4481969272815945488.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite4481969272815945488.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite4481969272815945488.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite4481969272815945488.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite4481969272815945488.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite4481969272815945488.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite4481969272815945488.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite4481969272815945488.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite4481969272815945488.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/.TempSuite7801777264983491193_1.fq.crc
/tmp/adamTestMvnhgcACDR/TempSuite6435598049242161374
/tmp/adamTestMvnhgcACDR/TempSuite5913818809683048785.adam
/tmp/adamTestMvnhgcACDR/TempSuite5913818809683048785.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite5913818809683048785.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite5913818809683048785.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite5913818809683048785.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/TempSuite5913818809683048785.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite5913818809683048785.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/TempSuite5913818809683048785.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite5913818809683048785.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite5913818809683048785.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite5913818809683048785.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite5913818809683048785.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite5913818809683048785.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite5913818809683048785.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite5913818809683048785.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite8893718127834013813.adam
/tmp/adamTestMvnhgcACDR/TempSuite8893718127834013813.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite8893718127834013813.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite8893718127834013813.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite8893718127834013813.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/TempSuite8893718127834013813.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite8893718127834013813.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/TempSuite8893718127834013813.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite8893718127834013813.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite8893718127834013813.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite8893718127834013813.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite8893718127834013813.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite8893718127834013813.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite8893718127834013813.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite8893718127834013813.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/adam-cli.TransformFeaturesSuite4033597591733803769.adam
/tmp/adamTestMvnhgcACDR/adam-cli.TransformFeaturesSuite4033597591733803769.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/adam-cli.TransformFeaturesSuite4033597591733803769.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/adam-cli.TransformFeaturesSuite4033597591733803769.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/adam-cli.TransformFeaturesSuite4033597591733803769.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/adam-cli.TransformFeaturesSuite4033597591733803769.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/adam-cli.TransformFeaturesSuite4033597591733803769.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/adam-cli.TransformFeaturesSuite4033597591733803769.adam/_references.avro
/tmp/adamTestMvnhgcACDR/adam-cli.TransformFeaturesSuite4033597591733803769.adam/_samples.avro
/tmp/adamTestMvnhgcACDR/adam-cli.TransformFeaturesSuite4033597591733803769.adam/_metadata
/tmp/adamTestMvnhgcACDR/adam-cli.TransformFeaturesSuite4033597591733803769.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/adam-cli.TransformFeaturesSuite4033597591733803769.adam/._samples.avro.crc
/tmp/adamTestMvnhgcACDR/adam-cli.TransformFeaturesSuite4033597591733803769.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite5412422005040081337
/tmp/adamTestMvnhgcACDR/TempSuite4589478715525452190.adam
/tmp/adamTestMvnhgcACDR/TempSuite4589478715525452190.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite4589478715525452190.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite4589478715525452190.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/TempSuite4589478715525452190.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/TempSuite4589478715525452190.adam/.part-00000-3f23be6d-72ba-4677-8645-c72ea4d868ac-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite4589478715525452190.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite4589478715525452190.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite4589478715525452190.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite4589478715525452190.adam/part-00000-3f23be6d-72ba-4677-8645-c72ea4d868ac-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite4589478715525452190.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/javaAC3091624829037467604
/tmp/adamTestMvnhgcACDR/javaAC3091624829037467604/testRdd.coverage.adam
/tmp/adamTestMvnhgcACDR/javaAC3091624829037467604/testRdd.coverage.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/javaAC3091624829037467604/testRdd.coverage.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnhgcACDR/javaAC3091624829037467604/testRdd.coverage.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/javaAC3091624829037467604/testRdd.coverage.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/javaAC3091624829037467604/testRdd.coverage.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/javaAC3091624829037467604/testRdd.coverage.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/javaAC3091624829037467604/testRdd.coverage.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/javaAC3091624829037467604/testRdd.coverage.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnhgcACDR/javaAC3091624829037467604/testRdd.coverage.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/javaAC3091624829037467604/testRdd.coverage.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnhgcACDR/javaAC3091624829037467604/testRdd.coverage.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/javaAC3091624829037467604/testRdd.coverage.adam/_references.avro
/tmp/adamTestMvnhgcACDR/javaAC3091624829037467604/testRdd.coverage.adam/_samples.avro
/tmp/adamTestMvnhgcACDR/javaAC3091624829037467604/testRdd.coverage.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/javaAC3091624829037467604/testRdd.coverage.adam/_metadata
/tmp/adamTestMvnhgcACDR/javaAC3091624829037467604/testRdd.coverage.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/javaAC3091624829037467604/testRdd.coverage.adam/._samples.avro.crc
/tmp/adamTestMvnhgcACDR/javaAC3091624829037467604/testRdd.coverage.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite10771836550283350.interval_list
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite10771836550283350.interval_list/.part-00003.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite10771836550283350.interval_list/.part-00000.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite10771836550283350.interval_list/_SUCCESS
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite10771836550283350.interval_list/part-00003
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite10771836550283350.interval_list/part-00000
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite10771836550283350.interval_list/part-00002
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite10771836550283350.interval_list/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite10771836550283350.interval_list/.part-00002.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite10771836550283350.interval_list/part-00001
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite10771836550283350.interval_list/.part-00001.crc
/tmp/adamTestMvnhgcACDR/TempSuite1135703221313312449.adam
/tmp/adamTestMvnhgcACDR/TempSuite1135703221313312449.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite1135703221313312449.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite1135703221313312449.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite1135703221313312449.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite1135703221313312449.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite1135703221313312449.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite1135703221313312449.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite1135703221313312449.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite1135703221313312449.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite1135703221313312449.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite1135703221313312449.adam/._header.crc
/tmp/adamTestMvnhgcACDR/TempSuite1135703221313312449.adam/_header
/tmp/adamTestMvnhgcACDR/TempSuite1780341946494129469.adam
/tmp/adamTestMvnhgcACDR/TempSuite1780341946494129469.adam/.part-00001-156f2bfa-1061-4f21-ae36-5d047b59a90e-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite1780341946494129469.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite1780341946494129469.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite1780341946494129469.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/TempSuite1780341946494129469.adam/.part-00000-156f2bfa-1061-4f21-ae36-5d047b59a90e-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite1780341946494129469.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/TempSuite1780341946494129469.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite1780341946494129469.adam/part-00000-156f2bfa-1061-4f21-ae36-5d047b59a90e-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite1780341946494129469.adam/part-00002-156f2bfa-1061-4f21-ae36-5d047b59a90e-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite1780341946494129469.adam/.part-00002-156f2bfa-1061-4f21-ae36-5d047b59a90e-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite1780341946494129469.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite1780341946494129469.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite1780341946494129469.adam/part-00001-156f2bfa-1061-4f21-ae36-5d047b59a90e-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite1780341946494129469.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite2052587741201604992
/tmp/adamTestMvnhgcACDR/TempSuite3996892809156646782.bed
/tmp/adamTestMvnhgcACDR/TempSuite3996892809156646782.bed/.part-00000.crc
/tmp/adamTestMvnhgcACDR/TempSuite3996892809156646782.bed/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite3996892809156646782.bed/part-00000
/tmp/adamTestMvnhgcACDR/TempSuite3996892809156646782.bed/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/.TempSuite5389842522793026124.bam.crc
/tmp/adamTestMvnhgcACDR/TempSuite2144270661587759838
/tmp/adamTestMvnhgcACDR/TempSuite6001121457888918426.bed
/tmp/adamTestMvnhgcACDR/TempSuite6001121457888918426.bed/.part-00000.crc
/tmp/adamTestMvnhgcACDR/TempSuite6001121457888918426.bed/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite6001121457888918426.bed/part-00000
/tmp/adamTestMvnhgcACDR/TempSuite6001121457888918426.bed/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite4385750674308703114
/tmp/adamTestMvnhgcACDR/unordered.sam1730242476150572582.sam
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4989703199041245091.bed
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4989703199041245091.bed/.part-00003.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4989703199041245091.bed/.part-00000.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4989703199041245091.bed/_SUCCESS
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4989703199041245091.bed/part-00003
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4989703199041245091.bed/part-00000
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4989703199041245091.bed/part-00002
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4989703199041245091.bed/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4989703199041245091.bed/.part-00002.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4989703199041245091.bed/part-00001
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4989703199041245091.bed/.part-00001.crc
/tmp/adamTestMvnhgcACDR/TempSuite5782690749137354767.bed
/tmp/adamTestMvnhgcACDR/TempSuite5782690749137354767.bed/.part-00000.crc
/tmp/adamTestMvnhgcACDR/TempSuite5782690749137354767.bed/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite5782690749137354767.bed/part-00000
/tmp/adamTestMvnhgcACDR/TempSuite5782690749137354767.bed/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite5969504527549387185
/tmp/adamTestMvnhgcACDR/TempSuite3648562589556818725
/tmp/adamTestMvnhgcACDR/ordered.sam1924578534923503264.sam
/tmp/adamTestMvnhgcACDR/javaAC3348160342747458757
/tmp/adamTestMvnhgcACDR/javaAC3348160342747458757/testRdd.variant.adam
/tmp/adamTestMvnhgcACDR/javaAC3348160342747458757/testRdd.variant.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/javaAC3348160342747458757/testRdd.variant.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/javaAC3348160342747458757/testRdd.variant.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/javaAC3348160342747458757/testRdd.variant.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/javaAC3348160342747458757/testRdd.variant.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/javaAC3348160342747458757/testRdd.variant.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/javaAC3348160342747458757/testRdd.variant.adam/_references.avro
/tmp/adamTestMvnhgcACDR/javaAC3348160342747458757/testRdd.variant.adam/_metadata
/tmp/adamTestMvnhgcACDR/javaAC3348160342747458757/testRdd.variant.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/javaAC3348160342747458757/testRdd.variant.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/javaAC3348160342747458757/testRdd.variant.adam/._header.crc
/tmp/adamTestMvnhgcACDR/javaAC3348160342747458757/testRdd.variant.adam/_header
/tmp/adamTestMvnhgcACDR/TempSuite5234085256487904293.adam
/tmp/adamTestMvnhgcACDR/TempSuite5234085256487904293.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite5234085256487904293.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite5234085256487904293.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite5234085256487904293.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/TempSuite5234085256487904293.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite5234085256487904293.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/TempSuite5234085256487904293.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite5234085256487904293.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite5234085256487904293.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite5234085256487904293.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite5234085256487904293.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite5234085256487904293.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite5234085256487904293.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite5234085256487904293.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/4129091310388485849
/tmp/adamTestMvnhgcACDR/4129091310388485849/.artificial.cram.crc
/tmp/adamTestMvnhgcACDR/4129091310388485849/artificial.cram
/tmp/adamTestMvnhgcACDR/TempSuite7257290334419438593.fq
/tmp/adamTestMvnhgcACDR/TempSuite961322116085537735.adam
/tmp/adamTestMvnhgcACDR/TempSuite961322116085537735.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite961322116085537735.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite961322116085537735.adam/_partitionedByStartPos
/tmp/adamTestMvnhgcACDR/TempSuite961322116085537735.adam/referenceName=1
/tmp/adamTestMvnhgcACDR/TempSuite961322116085537735.adam/referenceName=1/positionBin=0
/tmp/adamTestMvnhgcACDR/TempSuite961322116085537735.adam/referenceName=1/positionBin=0/part-00000-869df2ce-687a-43e2-b413-cba3f05ab441.c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite961322116085537735.adam/referenceName=1/positionBin=0/.part-00000-869df2ce-687a-43e2-b413-cba3f05ab441.c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite961322116085537735.adam/referenceName=1/positionBin=169
/tmp/adamTestMvnhgcACDR/TempSuite961322116085537735.adam/referenceName=1/positionBin=169/part-00001-869df2ce-687a-43e2-b413-cba3f05ab441.c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite961322116085537735.adam/referenceName=1/positionBin=169/.part-00001-869df2ce-687a-43e2-b413-cba3f05ab441.c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite961322116085537735.adam/referenceName=1/positionBin=14
/tmp/adamTestMvnhgcACDR/TempSuite961322116085537735.adam/referenceName=1/positionBin=14/part-00000-869df2ce-687a-43e2-b413-cba3f05ab441.c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite961322116085537735.adam/referenceName=1/positionBin=14/.part-00000-869df2ce-687a-43e2-b413-cba3f05ab441.c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite961322116085537735.adam/referenceName=1/positionBin=240
/tmp/adamTestMvnhgcACDR/TempSuite961322116085537735.adam/referenceName=1/positionBin=240/part-00002-869df2ce-687a-43e2-b413-cba3f05ab441.c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite961322116085537735.adam/referenceName=1/positionBin=240/.part-00002-869df2ce-687a-43e2-b413-cba3f05ab441.c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite961322116085537735.adam/._partitionedByStartPos.crc
/tmp/adamTestMvnhgcACDR/TempSuite961322116085537735.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite961322116085537735.adam/_samples.avro
/tmp/adamTestMvnhgcACDR/TempSuite961322116085537735.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite961322116085537735.adam/._samples.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite8520129960102117913.adam
/tmp/adamTestMvnhgcACDR/TempSuite8520129960102117913.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite8520129960102117913.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite8520129960102117913.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite8520129960102117913.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite8520129960102117913.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite8520129960102117913.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite8520129960102117913.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite8520129960102117913.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite8520129960102117913.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite8520129960102117913.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite8520129960102117913.adam/._header.crc
/tmp/adamTestMvnhgcACDR/TempSuite8520129960102117913.adam/_header
/tmp/adamTestMvnhgcACDR/TempSuite4540984709683842383.adam
/tmp/adamTestMvnhgcACDR/TempSuite4540984709683842383.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite4540984709683842383.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite4540984709683842383.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite4540984709683842383.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite4540984709683842383.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite4540984709683842383.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite4540984709683842383.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite4540984709683842383.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite4540984709683842383.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite4540984709683842383.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite4540984709683842383.adam/._header.crc
/tmp/adamTestMvnhgcACDR/TempSuite4540984709683842383.adam/_header
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite1443345709800682972.bed
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite1443345709800682972
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite7471662212566447876.adam
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite7471662212566447876.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite7471662212566447876.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite7471662212566447876.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite7471662212566447876.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite7471662212566447876.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite7471662212566447876.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite7471662212566447876.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite7471662212566447876.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite7471662212566447876.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite7471662212566447876.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite7471662212566447876.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite7471662212566447876.adam/_references.avro
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite7471662212566447876.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite7471662212566447876.adam/_metadata
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite7471662212566447876.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite7471662212566447876.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite3173493152736294589
/tmp/adamTestMvnhgcACDR/TempSuite6592608344856157297
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite8551916823004066557.bed
/tmp/adamTestMvnhgcACDR/TempSuite7073876833156243539.bam
/tmp/adamTestMvnhgcACDR/TempSuite7073876833156243539.bam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite7073876833156243539.bam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite7073876833156243539.bam/.part-r-00000.bam.crc
/tmp/adamTestMvnhgcACDR/TempSuite7073876833156243539.bam/part-r-00000.bam
/tmp/adamTestMvnhgcACDR/TempSuite2363377303073429262.sam
/tmp/adamTestMvnhgcACDR/TempSuite2363377303073429262.sam/part-r-00000.sam
/tmp/adamTestMvnhgcACDR/TempSuite2363377303073429262.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnhgcACDR/TempSuite2363377303073429262.sam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite2363377303073429262.sam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite4086038040556221727
/tmp/adamTestMvnhgcACDR/reads126939602385780695191
/tmp/adamTestMvnhgcACDR/reads126939602385780695191/reads12.sam
/tmp/adamTestMvnhgcACDR/reads126939602385780695191/reads12.sam/part-r-00000.sam
/tmp/adamTestMvnhgcACDR/reads126939602385780695191/reads12.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnhgcACDR/reads126939602385780695191/reads12.sam/_SUCCESS
/tmp/adamTestMvnhgcACDR/reads126939602385780695191/reads12.sam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite6639770041014087114
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite8913541541862949439
/tmp/adamTestMvnhgcACDR/TempSuite1615068349639632466
/tmp/adamTestMvnhgcACDR/8392228088552578345
/tmp/adamTestMvnhgcACDR/8392228088552578345/unordered.bam
/tmp/adamTestMvnhgcACDR/8392228088552578345/.unordered.bam.crc
/tmp/adamTestMvnhgcACDR/6568866708471687405
/tmp/adamTestMvnhgcACDR/6568866708471687405/genotypes.nested-annotations.adam
/tmp/adamTestMvnhgcACDR/6568866708471687405/genotypes.nested-annotations.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/6568866708471687405/genotypes.nested-annotations.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/6568866708471687405/genotypes.nested-annotations.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/6568866708471687405/genotypes.nested-annotations.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/6568866708471687405/genotypes.nested-annotations.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/6568866708471687405/genotypes.nested-annotations.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/6568866708471687405/genotypes.nested-annotations.adam/_references.avro
/tmp/adamTestMvnhgcACDR/6568866708471687405/genotypes.nested-annotations.adam/_samples.avro
/tmp/adamTestMvnhgcACDR/6568866708471687405/genotypes.nested-annotations.adam/_metadata
/tmp/adamTestMvnhgcACDR/6568866708471687405/genotypes.nested-annotations.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/6568866708471687405/genotypes.nested-annotations.adam/._samples.avro.crc
/tmp/adamTestMvnhgcACDR/6568866708471687405/genotypes.nested-annotations.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/6568866708471687405/genotypes.nested-annotations.adam/._header.crc
/tmp/adamTestMvnhgcACDR/6568866708471687405/genotypes.nested-annotations.adam/_header
/tmp/adamTestMvnhgcACDR/TempSuite2184484480632984242
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite9105440210336606322
/tmp/adamTestMvnhgcACDR/TempSuite1026613924097915485.adam
/tmp/adamTestMvnhgcACDR/TempSuite1026613924097915485.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite1026613924097915485.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite1026613924097915485.adam/_partitionedByStartPos
/tmp/adamTestMvnhgcACDR/TempSuite1026613924097915485.adam/referenceName=13
/tmp/adamTestMvnhgcACDR/TempSuite1026613924097915485.adam/referenceName=13/positionBin=0
/tmp/adamTestMvnhgcACDR/TempSuite1026613924097915485.adam/referenceName=13/positionBin=0/part-00000-e6a42728-b5d5-4f8e-8ede-140d763b39e2.c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite1026613924097915485.adam/referenceName=13/positionBin=0/.part-00000-e6a42728-b5d5-4f8e-8ede-140d763b39e2.c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite1026613924097915485.adam/referenceName=1
/tmp/adamTestMvnhgcACDR/TempSuite1026613924097915485.adam/referenceName=1/positionBin=0
/tmp/adamTestMvnhgcACDR/TempSuite1026613924097915485.adam/referenceName=1/positionBin=0/part-00000-e6a42728-b5d5-4f8e-8ede-140d763b39e2.c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite1026613924097915485.adam/referenceName=1/positionBin=0/.part-00000-e6a42728-b5d5-4f8e-8ede-140d763b39e2.c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite1026613924097915485.adam/._partitionedByStartPos.crc
/tmp/adamTestMvnhgcACDR/TempSuite1026613924097915485.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite1026613924097915485.adam/_samples.avro
/tmp/adamTestMvnhgcACDR/TempSuite1026613924097915485.adam/referenceName=2
/tmp/adamTestMvnhgcACDR/TempSuite1026613924097915485.adam/referenceName=2/positionBin=0
/tmp/adamTestMvnhgcACDR/TempSuite1026613924097915485.adam/referenceName=2/positionBin=0/part-00000-e6a42728-b5d5-4f8e-8ede-140d763b39e2.c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite1026613924097915485.adam/referenceName=2/positionBin=0/.part-00000-e6a42728-b5d5-4f8e-8ede-140d763b39e2.c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite1026613924097915485.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite1026613924097915485.adam/._samples.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite1026613924097915485.adam/._header.crc
/tmp/adamTestMvnhgcACDR/TempSuite1026613924097915485.adam/_header
/tmp/adamTestMvnhgcACDR/TempSuite6186726142943704458.adam
/tmp/adamTestMvnhgcACDR/TempSuite6186726142943704458.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite6186726142943704458.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite6186726142943704458.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite6186726142943704458.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite6186726142943704458.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite6186726142943704458.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite6186726142943704458.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite6186726142943704458.adam/_samples.avro
/tmp/adamTestMvnhgcACDR/TempSuite6186726142943704458.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite6186726142943704458.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite6186726142943704458.adam/._samples.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite6186726142943704458.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite6186726142943704458.adam/._header.crc
/tmp/adamTestMvnhgcACDR/TempSuite6186726142943704458.adam/_header
/tmp/adamTestMvnhgcACDR/TempSuite5258799785258054349
/tmp/adamTestMvnhgcACDR/small.sam9103790519590414282.sam
/tmp/adamTestMvnhgcACDR/202425158875307767
/tmp/adamTestMvnhgcACDR/202425158875307767/.artificial.cram.crc
/tmp/adamTestMvnhgcACDR/202425158875307767/artificial.cram
/tmp/adamTestMvnhgcACDR/TempSuite611920347575699688
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite7034785675176381007
/tmp/adamTestMvnhgcACDR/TempSuite6301259262439467468.adam
/tmp/adamTestMvnhgcACDR/TempSuite6301259262439467468.adam/.part-00001-a80c8aec-d844-4a65-8a77-8f8afc2775ed-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite6301259262439467468.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite6301259262439467468.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite6301259262439467468.adam/part-00001-a80c8aec-d844-4a65-8a77-8f8afc2775ed-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite6301259262439467468.adam/part-00000-a80c8aec-d844-4a65-8a77-8f8afc2775ed-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite6301259262439467468.adam/part-00002-a80c8aec-d844-4a65-8a77-8f8afc2775ed-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite6301259262439467468.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite6301259262439467468.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite6301259262439467468.adam/._header.crc
/tmp/adamTestMvnhgcACDR/TempSuite6301259262439467468.adam/.part-00000-a80c8aec-d844-4a65-8a77-8f8afc2775ed-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite6301259262439467468.adam/.part-00002-a80c8aec-d844-4a65-8a77-8f8afc2775ed-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite6301259262439467468.adam/_header
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3924152178451315118
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4989703199041245091
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite807572555856588392
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite6483100036524409937.fasta
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite6483100036524409937.fasta/.part-00003.crc
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite6483100036524409937.fasta/.part-00000.crc
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite6483100036524409937.fasta/_SUCCESS
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite6483100036524409937.fasta/part-00003
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite6483100036524409937.fasta/part-00000
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite6483100036524409937.fasta/part-00002
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite6483100036524409937.fasta/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite6483100036524409937.fasta/.part-00002.crc
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite6483100036524409937.fasta/part-00001
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite6483100036524409937.fasta/.part-00001.crc
/tmp/adamTestMvnhgcACDR/TempSuite8881099558004689888.adam
/tmp/adamTestMvnhgcACDR/TempSuite8881099558004689888.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite8881099558004689888.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite8881099558004689888.adam/part-00001-5de4025b-4a36-470e-89cb-2f7f8455567d-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite8881099558004689888.adam/part-00000-5de4025b-4a36-470e-89cb-2f7f8455567d-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite8881099558004689888.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite8881099558004689888.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite8881099558004689888.adam/.part-00000-5de4025b-4a36-470e-89cb-2f7f8455567d-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite8881099558004689888.adam/.part-00001-5de4025b-4a36-470e-89cb-2f7f8455567d-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite8881099558004689888.adam/part-00002-5de4025b-4a36-470e-89cb-2f7f8455567d-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite8881099558004689888.adam/.part-00002-5de4025b-4a36-470e-89cb-2f7f8455567d-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite1287908234555869591
/tmp/adamTestMvnhgcACDR/TempSuite1733669334062891926
/tmp/adamTestMvnhgcACDR/TempSuite5979766811739700906.bed
/tmp/adamTestMvnhgcACDR/TempSuite5979766811739700906.bed/.part-00003.crc
/tmp/adamTestMvnhgcACDR/TempSuite5979766811739700906.bed/.part-00000.crc
/tmp/adamTestMvnhgcACDR/TempSuite5979766811739700906.bed/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite5979766811739700906.bed/part-00003
/tmp/adamTestMvnhgcACDR/TempSuite5979766811739700906.bed/part-00000
/tmp/adamTestMvnhgcACDR/TempSuite5979766811739700906.bed/part-00002
/tmp/adamTestMvnhgcACDR/TempSuite5979766811739700906.bed/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite5979766811739700906.bed/.part-00002.crc
/tmp/adamTestMvnhgcACDR/TempSuite5979766811739700906.bed/part-00001
/tmp/adamTestMvnhgcACDR/TempSuite5979766811739700906.bed/.part-00001.crc
/tmp/adamTestMvnhgcACDR/TempSuite4684309256660201605
/tmp/adamTestMvnhgcACDR/TempSuite5745700173334144349.adam
/tmp/adamTestMvnhgcACDR/TempSuite5745700173334144349.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite5745700173334144349.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite5745700173334144349.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite5745700173334144349.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite5745700173334144349.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite5745700173334144349.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite5745700173334144349.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite5745700173334144349.adam/_samples.avro
/tmp/adamTestMvnhgcACDR/TempSuite5745700173334144349.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite5745700173334144349.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite5745700173334144349.adam/._samples.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite5745700173334144349.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite5745700173334144349.adam/._header.crc
/tmp/adamTestMvnhgcACDR/TempSuite5745700173334144349.adam/_header
/tmp/adamTestMvnhgcACDR/TempSuite2092020424475632957
/tmp/adamTestMvnhgcACDR/TempSuite2826047883863714865
/tmp/adamTestMvnhgcACDR/TempSuite3220899281634082496
/tmp/adamTestMvnhgcACDR/TempSuite7325926052564377982.adam
/tmp/adamTestMvnhgcACDR/TempSuite7325926052564377982.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite7325926052564377982.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite7325926052564377982.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite7325926052564377982.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite7325926052564377982.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite7325926052564377982.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite7325926052564377982.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite7325926052564377982.adam/_samples.avro
/tmp/adamTestMvnhgcACDR/TempSuite7325926052564377982.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite7325926052564377982.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite7325926052564377982.adam/._samples.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite7325926052564377982.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite7325926052564377982.adam/._header.crc
/tmp/adamTestMvnhgcACDR/TempSuite7325926052564377982.adam/_header
/tmp/adamTestMvnhgcACDR/TempSuite4560356815835372725
/tmp/adamTestMvnhgcACDR/TempSuite659850082104784305.adam
/tmp/adamTestMvnhgcACDR/TempSuite659850082104784305.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite659850082104784305.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite659850082104784305.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite659850082104784305.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite659850082104784305.adam/part-r-00004.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite659850082104784305.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite659850082104784305.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite659850082104784305.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite659850082104784305.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite659850082104784305.adam/.part-r-00004.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite659850082104784305.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite659850082104784305.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite659850082104784305.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite659850082104784305.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite659850082104784305.adam/_samples.avro
/tmp/adamTestMvnhgcACDR/TempSuite659850082104784305.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite659850082104784305.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite659850082104784305.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite659850082104784305.adam/._samples.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite659850082104784305.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4679548153528331768.gff3
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4679548153528331768.gff3/.part-00003.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4679548153528331768.gff3/.part-00000.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4679548153528331768.gff3/_SUCCESS
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4679548153528331768.gff3/part-00003
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4679548153528331768.gff3/part-00000
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4679548153528331768.gff3/part-00002
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4679548153528331768.gff3/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4679548153528331768.gff3/.part-00002.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4679548153528331768.gff3/part-00001
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4679548153528331768.gff3/.part-00001.crc
/tmp/adamTestMvnhgcACDR/TempSuite7197434770372735388.adam
/tmp/adamTestMvnhgcACDR/TempSuite7197434770372735388.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite7197434770372735388.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite7197434770372735388.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite7197434770372735388.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite7197434770372735388.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite7197434770372735388.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite7197434770372735388.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite7197434770372735388.adam/_samples.avro
/tmp/adamTestMvnhgcACDR/TempSuite7197434770372735388.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite7197434770372735388.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite7197434770372735388.adam/._samples.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite7197434770372735388.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite7197434770372735388.adam/._header.crc
/tmp/adamTestMvnhgcACDR/TempSuite7197434770372735388.adam/_header
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3113280204590727296.interval_list
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3113280204590727296.interval_list/.part-00003.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3113280204590727296.interval_list/.part-00000.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3113280204590727296.interval_list/_SUCCESS
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3113280204590727296.interval_list/part-00003
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3113280204590727296.interval_list/part-00000
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3113280204590727296.interval_list/part-00002
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3113280204590727296.interval_list/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3113280204590727296.interval_list/.part-00002.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3113280204590727296.interval_list/part-00001
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3113280204590727296.interval_list/.part-00001.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite1205222322266608558
/tmp/adamTestMvnhgcACDR/TempSuite5969504527549387185.vcf
/tmp/adamTestMvnhgcACDR/TempSuite5969504527549387185.vcf/.part-r-00000.crc
/tmp/adamTestMvnhgcACDR/TempSuite5969504527549387185.vcf/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite5969504527549387185.vcf/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite5969504527549387185.vcf/part-r-00000
/tmp/adamTestMvnhgcACDR/TempSuite5646473205670238179.adam
/tmp/adamTestMvnhgcACDR/TempSuite5646473205670238179.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite5646473205670238179.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite5646473205670238179.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite5646473205670238179.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/TempSuite5646473205670238179.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite5646473205670238179.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/TempSuite5646473205670238179.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite5646473205670238179.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite5646473205670238179.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite5646473205670238179.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite5646473205670238179.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite5646473205670238179.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite5646473205670238179.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite5646473205670238179.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite560958009633415330.bed
/tmp/adamTestMvnhgcACDR/TempSuite560958009633415330.bed/.part-00000.crc
/tmp/adamTestMvnhgcACDR/TempSuite560958009633415330.bed/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite560958009633415330.bed/part-00000
/tmp/adamTestMvnhgcACDR/TempSuite560958009633415330.bed/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite2838043165243634623
/tmp/adamTestMvnhgcACDR/TempSuite646693193648727823
/tmp/adamTestMvnhgcACDR/.SliceDatasetSuite7034785675176381007.fasta.crc
/tmp/adamTestMvnhgcACDR/TempSuite7354960947321348490
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3113280204590727296
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite7490173757516647254
/tmp/adamTestMvnhgcACDR/TempSuite929693123066635007.adam
/tmp/adamTestMvnhgcACDR/TempSuite929693123066635007.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite929693123066635007.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite929693123066635007.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/TempSuite929693123066635007.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/TempSuite929693123066635007.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite929693123066635007.adam/_partitionedByStartPos
/tmp/adamTestMvnhgcACDR/TempSuite929693123066635007.adam/referenceName=1
/tmp/adamTestMvnhgcACDR/TempSuite929693123066635007.adam/referenceName=1/positionBin=26
/tmp/adamTestMvnhgcACDR/TempSuite929693123066635007.adam/referenceName=1/positionBin=26/.part-00000-abddbc0a-5bb1-46c0-b632-edb71840d426.c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite929693123066635007.adam/referenceName=1/positionBin=26/part-00000-abddbc0a-5bb1-46c0-b632-edb71840d426.c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite929693123066635007.adam/referenceName=1/positionBin=240
/tmp/adamTestMvnhgcACDR/TempSuite929693123066635007.adam/referenceName=1/positionBin=240/.part-00000-abddbc0a-5bb1-46c0-b632-edb71840d426.c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite929693123066635007.adam/referenceName=1/positionBin=240/part-00000-abddbc0a-5bb1-46c0-b632-edb71840d426.c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite929693123066635007.adam/._partitionedByStartPos.crc
/tmp/adamTestMvnhgcACDR/TempSuite929693123066635007.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite929693123066635007.adam/referenceName=2
/tmp/adamTestMvnhgcACDR/TempSuite929693123066635007.adam/referenceName=2/positionBin=189
/tmp/adamTestMvnhgcACDR/TempSuite929693123066635007.adam/referenceName=2/positionBin=189/.part-00000-abddbc0a-5bb1-46c0-b632-edb71840d426.c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite929693123066635007.adam/referenceName=2/positionBin=189/part-00000-abddbc0a-5bb1-46c0-b632-edb71840d426.c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite929693123066635007.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite929693123066635007.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/1575235474204-0
/tmp/adamTestMvnhgcACDR/1575235474204-0/test.vcf
/tmp/adamTestMvnhgcACDR/1575235474204-0/test.vcf/.part-r-00000.crc
/tmp/adamTestMvnhgcACDR/1575235474204-0/test.vcf/_SUCCESS
/tmp/adamTestMvnhgcACDR/1575235474204-0/test.vcf/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/1575235474204-0/test.vcf/part-r-00000
/tmp/adamTestMvnhgcACDR/1575235474204-0/test_single.vcf
/tmp/adamTestMvnhgcACDR/1575235474204-0/.test_single.vcf.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite2327709705780610549.interval_list
/tmp/adamTestMvnhgcACDR/TempSuite515144778960258504.adam
/tmp/adamTestMvnhgcACDR/TempSuite515144778960258504.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite515144778960258504.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite515144778960258504.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite515144778960258504.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite515144778960258504.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite515144778960258504.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite515144778960258504.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite515144778960258504.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite515144778960258504.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite515144778960258504.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite515144778960258504.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite515144778960258504.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite515144778960258504.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite515144778960258504.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite515144778960258504.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite515144778960258504.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/sorted-variants.lex.vcf4252663482937662016.lex.vcf
/tmp/adamTestMvnhgcACDR/TempSuite6810036912705797624
/tmp/adamTestMvnhgcACDR/.ReadDatasetSuite8266439584075806539.fastq.crc
/tmp/adamTestMvnhgcACDR/TempSuite3097640698481522470
/tmp/adamTestMvnhgcACDR/7677932979092370165
/tmp/adamTestMvnhgcACDR/7677932979092370165/.readname_sorted.sam.crc
/tmp/adamTestMvnhgcACDR/7677932979092370165/readname_sorted.sam
/tmp/adamTestMvnhgcACDR/1042932806891673810
/tmp/adamTestMvnhgcACDR/1042932806891673810/tag.sam
/tmp/adamTestMvnhgcACDR/1042932806891673810/.tag.sam.crc
/tmp/adamTestMvnhgcACDR/TempSuite7577670871733132060.bed
/tmp/adamTestMvnhgcACDR/TempSuite7577670871733132060.bed/.part-00000.crc
/tmp/adamTestMvnhgcACDR/TempSuite7577670871733132060.bed/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite7577670871733132060.bed/part-00000
/tmp/adamTestMvnhgcACDR/TempSuite7577670871733132060.bed/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite3078297783586571336.adam
/tmp/adamTestMvnhgcACDR/TempSuite3078297783586571336.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite3078297783586571336.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite3078297783586571336.adam/part-00000-efefa6a0-2cfb-46e4-87c6-da96966cb9a5-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite3078297783586571336.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite3078297783586571336.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite3078297783586571336.adam/.part-00000-efefa6a0-2cfb-46e4-87c6-da96966cb9a5-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite3078297783586571336.adam/._header.crc
/tmp/adamTestMvnhgcACDR/TempSuite3078297783586571336.adam/_header
/tmp/adamTestMvnhgcACDR/TempSuite1367017391923025737.bed
/tmp/adamTestMvnhgcACDR/TempSuite1367017391923025737.bed/.part-00000.crc
/tmp/adamTestMvnhgcACDR/TempSuite1367017391923025737.bed/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite1367017391923025737.bed/part-00000
/tmp/adamTestMvnhgcACDR/TempSuite1367017391923025737.bed/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite6951593671436228493
/tmp/adamTestMvnhgcACDR/reads128003867156871741494
/tmp/adamTestMvnhgcACDR/reads128003867156871741494/reads12.fq
/tmp/adamTestMvnhgcACDR/reads128003867156871741494/reads12.fq/.part-00000.crc
/tmp/adamTestMvnhgcACDR/reads128003867156871741494/reads12.fq/_SUCCESS
/tmp/adamTestMvnhgcACDR/reads128003867156871741494/reads12.fq/part-00000
/tmp/adamTestMvnhgcACDR/reads128003867156871741494/reads12.fq/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite6859896487224550262.bed
/tmp/adamTestMvnhgcACDR/TempSuite6859896487224550262.bed/.part-00000.crc
/tmp/adamTestMvnhgcACDR/TempSuite6859896487224550262.bed/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite6859896487224550262.bed/part-00000
/tmp/adamTestMvnhgcACDR/TempSuite6859896487224550262.bed/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite1367017391923025737
/tmp/adamTestMvnhgcACDR/TempSuite7842518682276119227
/tmp/adamTestMvnhgcACDR/TempSuite8975121607261880737
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4873084569238192489.gff3
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4873084569238192489.gff3/.part-00003.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4873084569238192489.gff3/.part-00000.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4873084569238192489.gff3/_SUCCESS
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4873084569238192489.gff3/part-00003
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4873084569238192489.gff3/part-00000
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4873084569238192489.gff3/part-00002
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4873084569238192489.gff3/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4873084569238192489.gff3/.part-00002.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4873084569238192489.gff3/part-00001
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4873084569238192489.gff3/.part-00001.crc
/tmp/adamTestMvnhgcACDR/TempSuite6783813765895138323
/tmp/adamTestMvnhgcACDR/424746882267966618
/tmp/adamTestMvnhgcACDR/424746882267966618/out.cram_tail
/tmp/adamTestMvnhgcACDR/424746882267966618/out.cram_tail/.part-r-00003.cram.crc
/tmp/adamTestMvnhgcACDR/424746882267966618/out.cram_tail/.part-r-00001.cram.crc
/tmp/adamTestMvnhgcACDR/424746882267966618/out.cram_tail/_SUCCESS
/tmp/adamTestMvnhgcACDR/424746882267966618/out.cram_tail/.part-r-00000.cram.crc
/tmp/adamTestMvnhgcACDR/424746882267966618/out.cram_tail/part-r-00003.cram
/tmp/adamTestMvnhgcACDR/424746882267966618/out.cram_tail/part-r-00000.cram
/tmp/adamTestMvnhgcACDR/424746882267966618/out.cram_tail/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/424746882267966618/out.cram_tail/part-r-00002.cram
/tmp/adamTestMvnhgcACDR/424746882267966618/out.cram_tail/part-r-00001.cram
/tmp/adamTestMvnhgcACDR/424746882267966618/out.cram_tail/.part-r-00002.cram.crc
/tmp/adamTestMvnhgcACDR/424746882267966618/.out.cram.crc
/tmp/adamTestMvnhgcACDR/424746882267966618/out.cram_head
/tmp/adamTestMvnhgcACDR/424746882267966618/.out.cram_head.crc
/tmp/adamTestMvnhgcACDR/424746882267966618/out.cram
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite1922690979306306925
/tmp/adamTestMvnhgcACDR/TempSuite6357664299618613691
/tmp/adamTestMvnhgcACDR/TempSuite7769758399341888247
/tmp/adamTestMvnhgcACDR/1575235667215-0
/tmp/adamTestMvnhgcACDR/1575235667215-0/bamReads.adam
/tmp/adamTestMvnhgcACDR/1575235667215-0/bamReads.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/1575235667215-0/bamReads.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/1575235667215-0/bamReads.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/1575235667215-0/bamReads.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/1575235667215-0/bamReads.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/1575235667215-0/bamReads.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/1575235667215-0/bamReads.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/1575235667215-0/bamReads.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/1575235667215-0/bamReads.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/1575235667215-0/bamReads.adam/_references.avro
/tmp/adamTestMvnhgcACDR/1575235667215-0/bamReads.adam/_metadata
/tmp/adamTestMvnhgcACDR/1575235667215-0/bamReads.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/1575235667215-0/bamReads.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/1575235667215-0/bamReads.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite3879541251572855846
/tmp/adamTestMvnhgcACDR/TempSuite5160886018806657838.bed
/tmp/adamTestMvnhgcACDR/TempSuite5160886018806657838.bed/.part-00000.crc
/tmp/adamTestMvnhgcACDR/TempSuite5160886018806657838.bed/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite5160886018806657838.bed/part-00000
/tmp/adamTestMvnhgcACDR/TempSuite5160886018806657838.bed/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3280347931076737050
/tmp/adamTestMvnhgcACDR/TempSuite7325926052564377982
/tmp/adamTestMvnhgcACDR/TempSuite564510439914142675.adam
/tmp/adamTestMvnhgcACDR/TempSuite564510439914142675.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite564510439914142675.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite564510439914142675.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite564510439914142675.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite564510439914142675.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite564510439914142675.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite564510439914142675.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite564510439914142675.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite564510439914142675.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite564510439914142675.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite564510439914142675.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite564510439914142675.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite564510439914142675.adam/_samples.avro
/tmp/adamTestMvnhgcACDR/TempSuite564510439914142675.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite564510439914142675.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite564510439914142675.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite564510439914142675.adam/._samples.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite564510439914142675.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite564510439914142675.adam/._header.crc
/tmp/adamTestMvnhgcACDR/TempSuite564510439914142675.adam/_header
/tmp/adamTestMvnhgcACDR/TempSuite814942892234722587
/tmp/adamTestMvnhgcACDR/TempSuite8932844426019165668.adam
/tmp/adamTestMvnhgcACDR/TempSuite8932844426019165668.adam/.part-00000-2d6d31cf-5641-48a4-94ba-e3e2d3f9a376-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite8932844426019165668.adam/part-00000-2d6d31cf-5641-48a4-94ba-e3e2d3f9a376-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite8932844426019165668.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite8932844426019165668.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite8932844426019165668.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/TempSuite8932844426019165668.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/TempSuite8932844426019165668.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite8932844426019165668.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite8932844426019165668.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite8932844426019165668.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite8784572612607133158.gtf
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite1140291721255908590
/tmp/adamTestMvnhgcACDR/TempSuite7067481953914277040.sam
/tmp/adamTestMvnhgcACDR/TempSuite7067481953914277040.sam/part-r-00000.sam
/tmp/adamTestMvnhgcACDR/TempSuite7067481953914277040.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnhgcACDR/TempSuite7067481953914277040.sam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite7067481953914277040.sam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite5094789371900438057
/tmp/adamTestMvnhgcACDR/TempSuite1542057153503884690.adam
/tmp/adamTestMvnhgcACDR/TempSuite1542057153503884690.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite1542057153503884690.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite1542057153503884690.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite1542057153503884690.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite1542057153503884690.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite1542057153503884690.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite1542057153503884690.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite1542057153503884690.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite1542057153503884690.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite1542057153503884690.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite1542057153503884690.adam/._header.crc
/tmp/adamTestMvnhgcACDR/TempSuite1542057153503884690.adam/_header
/tmp/adamTestMvnhgcACDR/unsorted.sam3200907686627711606.sam
/tmp/adamTestMvnhgcACDR/TempSuite6812057428708236296.adam
/tmp/adamTestMvnhgcACDR/TempSuite6812057428708236296.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite6812057428708236296.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite6812057428708236296.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite6812057428708236296.adam/part-00000-f469349c-764b-420b-b25f-8a1ced4451e8-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite6812057428708236296.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite6812057428708236296.adam/._header.crc
/tmp/adamTestMvnhgcACDR/TempSuite6812057428708236296.adam/_header
/tmp/adamTestMvnhgcACDR/TempSuite6812057428708236296.adam/.part-00000-f469349c-764b-420b-b25f-8a1ced4451e8-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/small.vcf3667253107088998203.vcf
/tmp/adamTestMvnhgcACDR/TempSuite8506811954181045849.bed
/tmp/adamTestMvnhgcACDR/TempSuite8506811954181045849.bed/.part-00000.crc
/tmp/adamTestMvnhgcACDR/TempSuite8506811954181045849.bed/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite8506811954181045849.bed/part-00000
/tmp/adamTestMvnhgcACDR/TempSuite8506811954181045849.bed/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite788939860616032504.sam
/tmp/adamTestMvnhgcACDR/TempSuite788939860616032504.sam/part-r-00000.sam
/tmp/adamTestMvnhgcACDR/TempSuite788939860616032504.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnhgcACDR/TempSuite788939860616032504.sam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite788939860616032504.sam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/8071919204201332922
/tmp/adamTestMvnhgcACDR/8071919204201332922/..gff3.crc
/tmp/adamTestMvnhgcACDR/8071919204201332922/.gff3
/tmp/adamTestMvnhgcACDR/TempSuite811344972347523577.bed
/tmp/adamTestMvnhgcACDR/TempSuite811344972347523577.bed/.part-00000.crc
/tmp/adamTestMvnhgcACDR/TempSuite811344972347523577.bed/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite811344972347523577.bed/part-00000
/tmp/adamTestMvnhgcACDR/TempSuite811344972347523577.bed/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite4266153940999924447.adam
/tmp/adamTestMvnhgcACDR/TempSuite4266153940999924447.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite4266153940999924447.adam/part-00000-6eb42b25-8677-4352-9c7e-2e26cb1cec84-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite4266153940999924447.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite4266153940999924447.adam/.part-00000-6eb42b25-8677-4352-9c7e-2e26cb1cec84-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite4266153940999924447.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite4266153940999924447.adam/_samples.avro
/tmp/adamTestMvnhgcACDR/TempSuite4266153940999924447.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite4266153940999924447.adam/._samples.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite4266153940999924447.adam/._header.crc
/tmp/adamTestMvnhgcACDR/TempSuite4266153940999924447.adam/_header
/tmp/adamTestMvnhgcACDR/TempSuite4412836651107123675
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite2470860664016209037
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4359131161489319425
/tmp/adamTestMvnhgcACDR/TempSuite5160886018806657838
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4818731057607814168
/tmp/adamTestMvnhgcACDR/unordered.sam4284649066866201127.sam
/tmp/adamTestMvnhgcACDR/TempSuite8905956389754229240
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite9013762059705422443.fasta
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite9013762059705422443.fasta/.part-00003.crc
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite9013762059705422443.fasta/.part-00000.crc
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite9013762059705422443.fasta/_SUCCESS
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite9013762059705422443.fasta/part-00003
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite9013762059705422443.fasta/part-00000
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite9013762059705422443.fasta/part-00002
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite9013762059705422443.fasta/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite9013762059705422443.fasta/.part-00002.crc
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite9013762059705422443.fasta/part-00001
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite9013762059705422443.fasta/.part-00001.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3120749399138817176
/tmp/adamTestMvnhgcACDR/bqsr12215312866524474872
/tmp/adamTestMvnhgcACDR/bqsr12215312866524474872/.bqsr1.sam.crc
/tmp/adamTestMvnhgcACDR/bqsr12215312866524474872/bqsr1.sam
/tmp/adamTestMvnhgcACDR/TempSuite8126279075831892412
/tmp/adamTestMvnhgcACDR/3276147488306969757
/tmp/adamTestMvnhgcACDR/3276147488306969757/.readname_sorted.sam.crc
/tmp/adamTestMvnhgcACDR/3276147488306969757/readname_sorted.sam
/tmp/adamTestMvnhgcACDR/8451124769994400863
/tmp/adamTestMvnhgcACDR/8451124769994400863/ordered.sam
/tmp/adamTestMvnhgcACDR/8451124769994400863/.ordered.sam.crc
/tmp/adamTestMvnhgcACDR/TempSuite7043422580203182724
/tmp/adamTestMvnhgcACDR/8241379010063797794
/tmp/adamTestMvnhgcACDR/8241379010063797794/unordered.adam
/tmp/adamTestMvnhgcACDR/8241379010063797794/unordered.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/8241379010063797794/unordered.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/8241379010063797794/unordered.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/8241379010063797794/unordered.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/8241379010063797794/unordered.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/8241379010063797794/unordered.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/8241379010063797794/unordered.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/8241379010063797794/unordered.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/8241379010063797794/unordered.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/8241379010063797794/unordered.adam/_references.avro
/tmp/adamTestMvnhgcACDR/8241379010063797794/unordered.adam/_metadata
/tmp/adamTestMvnhgcACDR/8241379010063797794/unordered.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/8241379010063797794/unordered.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/8241379010063797794/unordered.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite5227846080027970928.adam
/tmp/adamTestMvnhgcACDR/TempSuite5227846080027970928.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite5227846080027970928.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite5227846080027970928.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/TempSuite5227846080027970928.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/TempSuite5227846080027970928.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite5227846080027970928.adam/.part-00000-1422961b-135f-4ef2-b56e-5ba708849999-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite5227846080027970928.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite5227846080027970928.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite5227846080027970928.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite5227846080027970928.adam/part-00000-1422961b-135f-4ef2-b56e-5ba708849999-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/2405947767633975287
/tmp/adamTestMvnhgcACDR/2405947767633975287/sorted-variants.vcf
/tmp/adamTestMvnhgcACDR/2405947767633975287/.sorted-variants.vcf.crc
/tmp/adamTestMvnhgcACDR/.TempSuite8651330218980209382.sam.crc
/tmp/adamTestMvnhgcACDR/TempSuite2955580501616427407.adam
/tmp/adamTestMvnhgcACDR/TempSuite2955580501616427407.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite2955580501616427407.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite2955580501616427407.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite2955580501616427407.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite2955580501616427407.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite2955580501616427407.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite2955580501616427407.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite2955580501616427407.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite2955580501616427407.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite2955580501616427407.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite7724596121523627268
/tmp/adamTestMvnhgcACDR/TempSuite5002432711254051866.adam
/tmp/adamTestMvnhgcACDR/TempSuite5002432711254051866.adam/part-00000-5da62e30-e4b3-42a6-93f8-3732f59cdce1-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite5002432711254051866.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite5002432711254051866.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite5002432711254051866.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite5002432711254051866.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite5002432711254051866.adam/.part-00000-5da62e30-e4b3-42a6-93f8-3732f59cdce1-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite464905129341494946.adam
/tmp/adamTestMvnhgcACDR/TempSuite464905129341494946.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite464905129341494946.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite464905129341494946.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite464905129341494946.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite464905129341494946.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite464905129341494946.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite464905129341494946.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite464905129341494946.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite464905129341494946.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite464905129341494946.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite464905129341494946.adam/._header.crc
/tmp/adamTestMvnhgcACDR/TempSuite464905129341494946.adam/_header
/tmp/adamTestMvnhgcACDR/2164850306490402959
/tmp/adamTestMvnhgcACDR/2164850306490402959/genotypes.adam
/tmp/adamTestMvnhgcACDR/2164850306490402959/genotypes.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/2164850306490402959/genotypes.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/2164850306490402959/genotypes.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/2164850306490402959/genotypes.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/2164850306490402959/genotypes.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/2164850306490402959/genotypes.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/2164850306490402959/genotypes.adam/_references.avro
/tmp/adamTestMvnhgcACDR/2164850306490402959/genotypes.adam/_samples.avro
/tmp/adamTestMvnhgcACDR/2164850306490402959/genotypes.adam/_metadata
/tmp/adamTestMvnhgcACDR/2164850306490402959/genotypes.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/2164850306490402959/genotypes.adam/._samples.avro.crc
/tmp/adamTestMvnhgcACDR/2164850306490402959/genotypes.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/2164850306490402959/genotypes.adam/._header.crc
/tmp/adamTestMvnhgcACDR/2164850306490402959/genotypes.adam/_header
/tmp/adamTestMvnhgcACDR/TempSuite8007253771843745894
/tmp/adamTestMvnhgcACDR/TempSuite2210214082306158610.bed
/tmp/adamTestMvnhgcACDR/TempSuite2210214082306158610.bed/.part-00000.crc
/tmp/adamTestMvnhgcACDR/TempSuite2210214082306158610.bed/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite2210214082306158610.bed/part-00000
/tmp/adamTestMvnhgcACDR/TempSuite2210214082306158610.bed/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite6225211075614094491
/tmp/adamTestMvnhgcACDR/sorted-variants.vcf4432387634418933984.vcf
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite6714257097913557521
/tmp/adamTestMvnhgcACDR/TempSuite3934878676852145083
/tmp/adamTestMvnhgcACDR/TempSuite3969572151770167967
/tmp/adamTestMvnhgcACDR/TempSuite3456590508839411252_2.fq
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite3508639149360931455.adam
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite3508639149360931455.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite3508639149360931455.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite3508639149360931455.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite3508639149360931455.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite3508639149360931455.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite3508639149360931455.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite3508639149360931455.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite3508639149360931455.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite3508639149360931455.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite3508639149360931455.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite3508639149360931455.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite3508639149360931455.adam/_references.avro
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite3508639149360931455.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite3508639149360931455.adam/_metadata
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite3508639149360931455.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite3508639149360931455.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite6263252893102435234
/tmp/adamTestMvnhgcACDR/sorted.sam8672552898961698465.sam
/tmp/adamTestMvnhgcACDR/.FeatureDatasetFunctionsSuite2327709705780610549.interval_list.crc
/tmp/adamTestMvnhgcACDR/hg19.chrM.2bit7555362720395120092.chrM.2bit
/tmp/adamTestMvnhgcACDR/gencode.v7.annotation.trunc10.bed1487819756951947673.v7.annotation.trunc10.bed
/tmp/adamTestMvnhgcACDR/TempSuite1141440014019556715
/tmp/adamTestMvnhgcACDR/unordered.sam2444076413188004929.sam
/tmp/adamTestMvnhgcACDR/TempSuite5488091462818441416
/tmp/adamTestMvnhgcACDR/TempSuite1818860990047779074
/tmp/adamTestMvnhgcACDR/TempSuite7417931111019196235
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite1209074005381871326.bed
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite1209074005381871326.bed/.part-00003.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite1209074005381871326.bed/.part-00000.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite1209074005381871326.bed/_SUCCESS
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite1209074005381871326.bed/part-00003
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite1209074005381871326.bed/part-00000
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite1209074005381871326.bed/part-00002
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite1209074005381871326.bed/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite1209074005381871326.bed/.part-00002.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite1209074005381871326.bed/part-00001
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite1209074005381871326.bed/.part-00001.crc
/tmp/adamTestMvnhgcACDR/TempSuite2716938334741165713
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3280347931076737050.narrowPeak
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3280347931076737050.narrowPeak/.part-00003.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3280347931076737050.narrowPeak/.part-00000.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3280347931076737050.narrowPeak/_SUCCESS
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3280347931076737050.narrowPeak/part-00003
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3280347931076737050.narrowPeak/part-00000
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3280347931076737050.narrowPeak/part-00002
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3280347931076737050.narrowPeak/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3280347931076737050.narrowPeak/.part-00002.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3280347931076737050.narrowPeak/part-00001
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3280347931076737050.narrowPeak/.part-00001.crc
/tmp/adamTestMvnhgcACDR/TempSuite7205198229845846681
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3924152178451315118.narrowPeak
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3924152178451315118.narrowPeak/.part-00003.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3924152178451315118.narrowPeak/.part-00000.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3924152178451315118.narrowPeak/_SUCCESS
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3924152178451315118.narrowPeak/part-00003
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3924152178451315118.narrowPeak/part-00000
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3924152178451315118.narrowPeak/part-00002
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3924152178451315118.narrowPeak/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3924152178451315118.narrowPeak/.part-00002.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3924152178451315118.narrowPeak/part-00001
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3924152178451315118.narrowPeak/.part-00001.crc
/tmp/adamTestMvnhgcACDR/TempSuite2748069759611674384
/tmp/adamTestMvnhgcACDR/TempSuite5139552234028586606.sam
/tmp/adamTestMvnhgcACDR/TempSuite5139552234028586606.sam/part-r-00000.sam
/tmp/adamTestMvnhgcACDR/TempSuite5139552234028586606.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnhgcACDR/TempSuite5139552234028586606.sam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite5139552234028586606.sam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite447645209314038723.sam
/tmp/adamTestMvnhgcACDR/TempSuite447645209314038723.sam/part-r-00000.sam
/tmp/adamTestMvnhgcACDR/TempSuite447645209314038723.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnhgcACDR/TempSuite447645209314038723.sam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite447645209314038723.sam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite4086038040556221727.adam
/tmp/adamTestMvnhgcACDR/TempSuite4086038040556221727.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite4086038040556221727.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite4086038040556221727.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite4086038040556221727.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/TempSuite4086038040556221727.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite4086038040556221727.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/TempSuite4086038040556221727.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite4086038040556221727.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite4086038040556221727.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite4086038040556221727.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite4086038040556221727.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite4086038040556221727.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite4086038040556221727.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite4086038040556221727.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/unordered.sam671816029021075576.sam
/tmp/adamTestMvnhgcACDR/.FeatureDatasetFunctionsSuite8112301296591659090.narrowPeak.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite2051112830893660785
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite6448096291304218415
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite8072477112514950051.narrowPeak
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite8072477112514950051.narrowPeak/.part-00003.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite8072477112514950051.narrowPeak/.part-00000.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite8072477112514950051.narrowPeak/_SUCCESS
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite8072477112514950051.narrowPeak/part-00003
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite8072477112514950051.narrowPeak/part-00000
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite8072477112514950051.narrowPeak/part-00002
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite8072477112514950051.narrowPeak/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite8072477112514950051.narrowPeak/.part-00002.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite8072477112514950051.narrowPeak/part-00001
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite8072477112514950051.narrowPeak/.part-00001.crc
/tmp/adamTestMvnhgcACDR/404177090464490416
/tmp/adamTestMvnhgcACDR/404177090464490416/bqsr1.vcf.bgz
/tmp/adamTestMvnhgcACDR/404177090464490416/bqsr1.vcf.bgz/part-r-00000.bgz
/tmp/adamTestMvnhgcACDR/404177090464490416/bqsr1.vcf.bgz/.part-r-00000.bgz.crc
/tmp/adamTestMvnhgcACDR/404177090464490416/bqsr1.vcf.bgz/_SUCCESS
/tmp/adamTestMvnhgcACDR/404177090464490416/bqsr1.vcf.bgz/.part-r-00003.bgz.crc
/tmp/adamTestMvnhgcACDR/404177090464490416/bqsr1.vcf.bgz/part-r-00001.bgz
/tmp/adamTestMvnhgcACDR/404177090464490416/bqsr1.vcf.bgz/part-r-00003.bgz
/tmp/adamTestMvnhgcACDR/404177090464490416/bqsr1.vcf.bgz/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/404177090464490416/bqsr1.vcf.bgz/part-r-00002.bgz
/tmp/adamTestMvnhgcACDR/404177090464490416/bqsr1.vcf.bgz/.part-r-00002.bgz.crc
/tmp/adamTestMvnhgcACDR/404177090464490416/bqsr1.vcf.bgz/.part-r-00001.bgz.crc
/tmp/adamTestMvnhgcACDR/TempSuite4624221362092591506
/tmp/adamTestMvnhgcACDR/TempSuite6198436319431262327.adam
/tmp/adamTestMvnhgcACDR/TempSuite6198436319431262327.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite6198436319431262327.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite6198436319431262327.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite6198436319431262327.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite6198436319431262327.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite6198436319431262327.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/TempSuite6198436319431262327.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite6198436319431262327.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/TempSuite6198436319431262327.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite6198436319431262327.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite6198436319431262327.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite6198436319431262327.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite6198436319431262327.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite6198436319431262327.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite6198436319431262327.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite6198436319431262327.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite6198436319431262327.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite6198436319431262327.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite6198436319431262327.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite6198436319431262327.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite2040007718553460281.fq
/tmp/adamTestMvnhgcACDR/TempSuite2040007718553460281.fq/.part-00000.crc
/tmp/adamTestMvnhgcACDR/TempSuite2040007718553460281.fq/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite2040007718553460281.fq/part-00000
/tmp/adamTestMvnhgcACDR/TempSuite2040007718553460281.fq/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite3494609695554546113
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite511152407322995713
/tmp/adamTestMvnhgcACDR/TempSuite649360336804857421
/tmp/adamTestMvnhgcACDR/TempSuite7417931111019196235.adam
/tmp/adamTestMvnhgcACDR/TempSuite7417931111019196235.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite7417931111019196235.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite7417931111019196235.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite7417931111019196235.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/TempSuite7417931111019196235.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite7417931111019196235.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/TempSuite7417931111019196235.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite7417931111019196235.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite7417931111019196235.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite7417931111019196235.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite7417931111019196235.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite7417931111019196235.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite7417931111019196235.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite7417931111019196235.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite526219064517248116.fa
/tmp/adamTestMvnhgcACDR/TempSuite526219064517248116.fa/.part-00000.crc
/tmp/adamTestMvnhgcACDR/TempSuite526219064517248116.fa/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite526219064517248116.fa/part-00000
/tmp/adamTestMvnhgcACDR/TempSuite526219064517248116.fa/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite235678117327212792.adam
/tmp/adamTestMvnhgcACDR/TempSuite235678117327212792.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite235678117327212792.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite235678117327212792.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite235678117327212792.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite235678117327212792.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite235678117327212792.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite235678117327212792.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite235678117327212792.adam/_samples.avro
/tmp/adamTestMvnhgcACDR/TempSuite235678117327212792.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite235678117327212792.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite235678117327212792.adam/._samples.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite235678117327212792.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/.FeatureDatasetFunctionsSuite5276092634507788799.bed.crc
/tmp/adamTestMvnhgcACDR/TempSuite992998515013597959.adam
/tmp/adamTestMvnhgcACDR/TempSuite992998515013597959.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite992998515013597959.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite992998515013597959.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/TempSuite992998515013597959.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/TempSuite992998515013597959.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite992998515013597959.adam/.part-00000-dd47dcce-6732-4938-9da5-209074a5ea06-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite992998515013597959.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite992998515013597959.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite992998515013597959.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite992998515013597959.adam/part-00000-dd47dcce-6732-4938-9da5-209074a5ea06-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite6721161832124186894.gff3
/tmp/adamTestMvnhgcACDR/TempSuite33584293136114176.adam
/tmp/adamTestMvnhgcACDR/TempSuite33584293136114176.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite33584293136114176.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite33584293136114176.adam/.part-00000-ad7b3b05-92e6-4ed4-843d-efd2219b9f5e-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite33584293136114176.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite33584293136114176.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite33584293136114176.adam/._header.crc
/tmp/adamTestMvnhgcACDR/TempSuite33584293136114176.adam/_header
/tmp/adamTestMvnhgcACDR/TempSuite33584293136114176.adam/part-00000-ad7b3b05-92e6-4ed4-843d-efd2219b9f5e-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/1785105293656438781
/tmp/adamTestMvnhgcACDR/1785105293656438781/predicate.2.adam
/tmp/adamTestMvnhgcACDR/1785105293656438781/predicate.2.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/1785105293656438781/predicate.2.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/1785105293656438781/predicate.2.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/1785105293656438781/predicate.2.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/1785105293656438781/predicate.2.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/1785105293656438781/predicate.2.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/1785105293656438781/predicate.2.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/1785105293656438781/predicate.2.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/1785105293656438781/predicate.2.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/1785105293656438781/predicate.2.adam/_references.avro
/tmp/adamTestMvnhgcACDR/1785105293656438781/predicate.2.adam/_metadata
/tmp/adamTestMvnhgcACDR/1785105293656438781/predicate.2.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/1785105293656438781/predicate.2.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/1785105293656438781/predicate.2.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite7587369932314999193.adam
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite7587369932314999193.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite7587369932314999193.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite7587369932314999193.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite7587369932314999193.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite7587369932314999193.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite7587369932314999193.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite7587369932314999193.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite7587369932314999193.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite7587369932314999193.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite7587369932314999193.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite7587369932314999193.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite7587369932314999193.adam/_references.avro
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite7587369932314999193.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite7587369932314999193.adam/_metadata
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite7587369932314999193.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite7587369932314999193.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite8524216340506807810
/tmp/adamTestMvnhgcACDR/6787320607463090995
/tmp/adamTestMvnhgcACDR/6787320607463090995/.sorted.lex.vcf.crc
/tmp/adamTestMvnhgcACDR/6787320607463090995/sorted.lex.vcf
/tmp/adamTestMvnhgcACDR/TempSuite4000434812497837995.adam
/tmp/adamTestMvnhgcACDR/TempSuite4000434812497837995.adam/part-00001-18b808b9-2c4a-4d33-837b-93d395f74be9-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite4000434812497837995.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite4000434812497837995.adam/part-00002-18b808b9-2c4a-4d33-837b-93d395f74be9-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite4000434812497837995.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite4000434812497837995.adam/part-00000-18b808b9-2c4a-4d33-837b-93d395f74be9-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite4000434812497837995.adam/.part-00000-18b808b9-2c4a-4d33-837b-93d395f74be9-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite4000434812497837995.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite4000434812497837995.adam/_samples.avro
/tmp/adamTestMvnhgcACDR/TempSuite4000434812497837995.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite4000434812497837995.adam/.part-00002-18b808b9-2c4a-4d33-837b-93d395f74be9-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite4000434812497837995.adam/._samples.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite4000434812497837995.adam/.part-00001-18b808b9-2c4a-4d33-837b-93d395f74be9-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite5655763290433372346.bam
/tmp/adamTestMvnhgcACDR/noqual7734059730904327561
/tmp/adamTestMvnhgcACDR/noqual7734059730904327561/noqualB.fastq
/tmp/adamTestMvnhgcACDR/noqual7734059730904327561/noqualB.fastq/.part-00000.crc
/tmp/adamTestMvnhgcACDR/noqual7734059730904327561/noqualB.fastq/_SUCCESS
/tmp/adamTestMvnhgcACDR/noqual7734059730904327561/noqualB.fastq/part-00000
/tmp/adamTestMvnhgcACDR/noqual7734059730904327561/noqualB.fastq/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/noqual7734059730904327561/noqualA.sam
/tmp/adamTestMvnhgcACDR/noqual7734059730904327561/noqualA.sam/part-r-00000.sam
/tmp/adamTestMvnhgcACDR/noqual7734059730904327561/noqualA.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnhgcACDR/noqual7734059730904327561/noqualA.sam/_SUCCESS
/tmp/adamTestMvnhgcACDR/noqual7734059730904327561/noqualA.sam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite8345882092621828763.adam
/tmp/adamTestMvnhgcACDR/TempSuite8345882092621828763.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite8345882092621828763.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite8345882092621828763.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite8345882092621828763.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/TempSuite8345882092621828763.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite8345882092621828763.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/TempSuite8345882092621828763.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite8345882092621828763.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite8345882092621828763.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite8345882092621828763.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite8345882092621828763.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite8345882092621828763.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite8345882092621828763.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite8345882092621828763.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4359131161489319425.interval_list
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4359131161489319425.interval_list/.part-00003.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4359131161489319425.interval_list/.part-00000.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4359131161489319425.interval_list/_SUCCESS
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4359131161489319425.interval_list/part-00003
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4359131161489319425.interval_list/part-00000
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4359131161489319425.interval_list/part-00002
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4359131161489319425.interval_list/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4359131161489319425.interval_list/.part-00002.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4359131161489319425.interval_list/part-00001
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4359131161489319425.interval_list/.part-00001.crc
/tmp/adamTestMvnhgcACDR/TempSuite5328993267304299603_1.fq
/tmp/adamTestMvnhgcACDR/TempSuite5328993267304299603_1.fq/.part-00000.crc
/tmp/adamTestMvnhgcACDR/TempSuite5328993267304299603_1.fq/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite5328993267304299603_1.fq/part-00000
/tmp/adamTestMvnhgcACDR/TempSuite5328993267304299603_1.fq/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite8028679938405519276.adam
/tmp/adamTestMvnhgcACDR/TempSuite8028679938405519276.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite8028679938405519276.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite8028679938405519276.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite8028679938405519276.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite8028679938405519276.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite8028679938405519276.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite8028679938405519276.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite8028679938405519276.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite8028679938405519276.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite8028679938405519276.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite3648562589556818725.adam
/tmp/adamTestMvnhgcACDR/TempSuite3648562589556818725.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite3648562589556818725.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite3648562589556818725.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite3648562589556818725.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite3648562589556818725.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite3648562589556818725.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite3648562589556818725.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite3648562589556818725.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite3648562589556818725.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite3648562589556818725.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite3648562589556818725.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite3648562589556818725.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite3648562589556818725.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite3648562589556818725.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite3648562589556818725.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite3648562589556818725.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite2080569020304243910
/tmp/adamTestMvnhgcACDR/TempSuite139232902610462724
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4679548153528331768
/tmp/adamTestMvnhgcACDR/TempSuite1291137600047255870.adam
/tmp/adamTestMvnhgcACDR/TempSuite1291137600047255870.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite1291137600047255870.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite1291137600047255870.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/TempSuite1291137600047255870.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/TempSuite1291137600047255870.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite1291137600047255870.adam/.part-00000-406b6549-80fa-445c-b04e-f17a2a0ec9e4-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite1291137600047255870.adam/part-00000-406b6549-80fa-445c-b04e-f17a2a0ec9e4-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite1291137600047255870.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite1291137600047255870.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite1291137600047255870.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite7441435335347501315
/tmp/adamTestMvnhgcACDR/TempSuite4442581213868296653.adam
/tmp/adamTestMvnhgcACDR/TempSuite4442581213868296653.adam/part-00002-42d43f91-73ec-4f6c-9cee-3a1062342729-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite4442581213868296653.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite4442581213868296653.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite4442581213868296653.adam/part-00001-42d43f91-73ec-4f6c-9cee-3a1062342729-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite4442581213868296653.adam/.part-00001-42d43f91-73ec-4f6c-9cee-3a1062342729-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite4442581213868296653.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite4442581213868296653.adam/.part-00002-42d43f91-73ec-4f6c-9cee-3a1062342729-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite4442581213868296653.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite4442581213868296653.adam/._header.crc
/tmp/adamTestMvnhgcACDR/TempSuite4442581213868296653.adam/_header
/tmp/adamTestMvnhgcACDR/TempSuite4442581213868296653.adam/part-00000-42d43f91-73ec-4f6c-9cee-3a1062342729-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite4442581213868296653.adam/.part-00000-42d43f91-73ec-4f6c-9cee-3a1062342729-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite8348664331348856828
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4818731057607814168.gtf
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4818731057607814168.gtf/.part-00003.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4818731057607814168.gtf/.part-00000.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4818731057607814168.gtf/_SUCCESS
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4818731057607814168.gtf/part-00003
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4818731057607814168.gtf/part-00000
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4818731057607814168.gtf/part-00002
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4818731057607814168.gtf/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4818731057607814168.gtf/.part-00002.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4818731057607814168.gtf/part-00001
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4818731057607814168.gtf/.part-00001.crc
/tmp/adamTestMvnhgcACDR/TempSuite7165265085415023662
/tmp/adamTestMvnhgcACDR/.TempSuite649360336804857421.sam.crc
/tmp/adamTestMvnhgcACDR/TempSuite1186377572014782874reads12.sam
/tmp/adamTestMvnhgcACDR/TempSuite560958009633415330
/tmp/adamTestMvnhgcACDR/5255297251073701898
/tmp/adamTestMvnhgcACDR/5255297251073701898/genotypes.lex.adam
/tmp/adamTestMvnhgcACDR/5255297251073701898/genotypes.lex.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/5255297251073701898/genotypes.lex.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/5255297251073701898/genotypes.lex.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/5255297251073701898/genotypes.lex.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/5255297251073701898/genotypes.lex.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/5255297251073701898/genotypes.lex.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/5255297251073701898/genotypes.lex.adam/_references.avro
/tmp/adamTestMvnhgcACDR/5255297251073701898/genotypes.lex.adam/_samples.avro
/tmp/adamTestMvnhgcACDR/5255297251073701898/genotypes.lex.adam/_metadata
/tmp/adamTestMvnhgcACDR/5255297251073701898/genotypes.lex.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/5255297251073701898/genotypes.lex.adam/._samples.avro.crc
/tmp/adamTestMvnhgcACDR/5255297251073701898/genotypes.lex.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/5255297251073701898/genotypes.lex.adam/._header.crc
/tmp/adamTestMvnhgcACDR/5255297251073701898/genotypes.lex.adam/_header
/tmp/adamTestMvnhgcACDR/TempSuite14764225032285462.adam
/tmp/adamTestMvnhgcACDR/TempSuite14764225032285462.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite14764225032285462.adam/part-00000-5a84974d-8ccf-48ae-8cb5-87b82e7a4a2c-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite14764225032285462.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite14764225032285462.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite14764225032285462.adam/_samples.avro
/tmp/adamTestMvnhgcACDR/TempSuite14764225032285462.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite14764225032285462.adam/._samples.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite14764225032285462.adam/._header.crc
/tmp/adamTestMvnhgcACDR/TempSuite14764225032285462.adam/.part-00000-5a84974d-8ccf-48ae-8cb5-87b82e7a4a2c-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite14764225032285462.adam/_header
/tmp/adamTestMvnhgcACDR/TempSuite5488091462818441416.bed
/tmp/adamTestMvnhgcACDR/TempSuite5488091462818441416.bed/.part-00000.crc
/tmp/adamTestMvnhgcACDR/TempSuite5488091462818441416.bed/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite5488091462818441416.bed/part-00000
/tmp/adamTestMvnhgcACDR/TempSuite5488091462818441416.bed/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite6582420339643869815.adam
/tmp/adamTestMvnhgcACDR/TempSuite6582420339643869815.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite6582420339643869815.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite6582420339643869815.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite6582420339643869815.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite6582420339643869815.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite6582420339643869815.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite6582420339643869815.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite6582420339643869815.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite6582420339643869815.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite6582420339643869815.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite2737121622107875198
/tmp/adamTestMvnhgcACDR/TempSuite6435598049242161374_2.fq
/tmp/adamTestMvnhgcACDR/TempSuite6435598049242161374_2.fq/.part-00000.crc
/tmp/adamTestMvnhgcACDR/TempSuite6435598049242161374_2.fq/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite6435598049242161374_2.fq/part-00000
/tmp/adamTestMvnhgcACDR/TempSuite6435598049242161374_2.fq/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite1024983857231220975.adam
/tmp/adamTestMvnhgcACDR/TempSuite1024983857231220975.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite1024983857231220975.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite1024983857231220975.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite1024983857231220975.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite1024983857231220975.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite1024983857231220975.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite1024983857231220975.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite1024983857231220975.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite1024983857231220975.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite1024983857231220975.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite6408483519380462492
/tmp/adamTestMvnhgcACDR/7230301843942653803
/tmp/adamTestMvnhgcACDR/7230301843942653803/genotypes.lex.adam
/tmp/adamTestMvnhgcACDR/7230301843942653803/genotypes.lex.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/7230301843942653803/genotypes.lex.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/7230301843942653803/genotypes.lex.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/7230301843942653803/genotypes.lex.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/7230301843942653803/genotypes.lex.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/7230301843942653803/genotypes.lex.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/7230301843942653803/genotypes.lex.adam/_references.avro
/tmp/adamTestMvnhgcACDR/7230301843942653803/genotypes.lex.adam/_samples.avro
/tmp/adamTestMvnhgcACDR/7230301843942653803/genotypes.lex.adam/_metadata
/tmp/adamTestMvnhgcACDR/7230301843942653803/genotypes.lex.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/7230301843942653803/genotypes.lex.adam/._samples.avro.crc
/tmp/adamTestMvnhgcACDR/7230301843942653803/genotypes.lex.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/7230301843942653803/genotypes.lex.adam/._header.crc
/tmp/adamTestMvnhgcACDR/7230301843942653803/genotypes.lex.adam/_header
/tmp/adamTestMvnhgcACDR/TempSuite7577670871733132060
/tmp/adamTestMvnhgcACDR/.TempSuite4362685159680375134.bam.crc
/tmp/adamTestMvnhgcACDR/random.vcf7577801343091316037.vcf
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite5486887234343250604
/tmp/adamTestMvnhgcACDR/TempSuite2599123060680005454
/tmp/adamTestMvnhgcACDR/TempSuite8881099558004689888
/tmp/adamTestMvnhgcACDR/TempSuite7656434602344720516
/tmp/adamTestMvnhgcACDR/TempSuite788939860616032504
/tmp/adamTestMvnhgcACDR/TempSuite8573542290634909333
/tmp/adamTestMvnhgcACDR/TempSuite4555712074651646090
/tmp/adamTestMvnhgcACDR/TempSuite8320690225038434360
/tmp/adamTestMvnhgcACDR/TempSuite7783448109029522527.adam
/tmp/adamTestMvnhgcACDR/TempSuite7783448109029522527.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite7783448109029522527.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite7783448109029522527.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite7783448109029522527.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite7783448109029522527.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite7783448109029522527.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/TempSuite7783448109029522527.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite7783448109029522527.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/TempSuite7783448109029522527.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite7783448109029522527.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite7783448109029522527.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite7783448109029522527.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite7783448109029522527.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite7783448109029522527.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite7783448109029522527.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite7783448109029522527.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite7783448109029522527.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite7783448109029522527.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite7783448109029522527.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite7783448109029522527.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite5412422005040081337.adam
/tmp/adamTestMvnhgcACDR/TempSuite5412422005040081337.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite5412422005040081337.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite5412422005040081337.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite5412422005040081337.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite5412422005040081337.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite5412422005040081337.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite5412422005040081337.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite5412422005040081337.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite5412422005040081337.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite5412422005040081337.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite5412422005040081337.adam/._header.crc
/tmp/adamTestMvnhgcACDR/TempSuite5412422005040081337.adam/_header
/tmp/adamTestMvnhgcACDR/TempSuite1312560511912030399.adam
/tmp/adamTestMvnhgcACDR/TempSuite1312560511912030399.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite1312560511912030399.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite1312560511912030399.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite1312560511912030399.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite1312560511912030399.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite1312560511912030399.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite1312560511912030399.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite1312560511912030399.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite1312560511912030399.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite1312560511912030399.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/7834506981162366091
/tmp/adamTestMvnhgcACDR/7834506981162366091/.small.vcf.bgz.crc
/tmp/adamTestMvnhgcACDR/7834506981162366091/small.vcf.bgz
/tmp/adamTestMvnhgcACDR/2787264403517436949
/tmp/adamTestMvnhgcACDR/2787264403517436949/unordered.sam
/tmp/adamTestMvnhgcACDR/2787264403517436949/.unordered.sam.crc
/tmp/adamTestMvnhgcACDR/5807534603893763008
/tmp/adamTestMvnhgcACDR/5807534603893763008/artificial.cram
/tmp/adamTestMvnhgcACDR/5807534603893763008/artificial.cram/_SUCCESS
/tmp/adamTestMvnhgcACDR/5807534603893763008/artificial.cram/.part-r-00000.cram.crc
/tmp/adamTestMvnhgcACDR/5807534603893763008/artificial.cram/part-r-00000.cram
/tmp/adamTestMvnhgcACDR/5807534603893763008/artificial.cram/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite8587772260969487216.bam
/tmp/adamTestMvnhgcACDR/TempSuite8587772260969487216.bam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite8587772260969487216.bam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite8587772260969487216.bam/.part-r-00000.bam.crc
/tmp/adamTestMvnhgcACDR/TempSuite8587772260969487216.bam/part-r-00000.bam
/tmp/adamTestMvnhgcACDR/5396078102809081687
/tmp/adamTestMvnhgcACDR/5396078102809081687/ordered.sam
/tmp/adamTestMvnhgcACDR/5396078102809081687/.ordered.sam.crc
/tmp/adamTestMvnhgcACDR/TempSuite8844592147852427075.bed
/tmp/adamTestMvnhgcACDR/TempSuite8844592147852427075.bed/.part-00000.crc
/tmp/adamTestMvnhgcACDR/TempSuite8844592147852427075.bed/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite8844592147852427075.bed/part-00000
/tmp/adamTestMvnhgcACDR/TempSuite8844592147852427075.bed/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite6016349513510933251
/tmp/adamTestMvnhgcACDR/random.vcf738869592037359915.vcf
/tmp/adamTestMvnhgcACDR/TempSuite4026119414682880499.adam
/tmp/adamTestMvnhgcACDR/TempSuite4026119414682880499.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite4026119414682880499.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite4026119414682880499.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite4026119414682880499.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite4026119414682880499.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite4026119414682880499.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite4026119414682880499.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite4026119414682880499.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite4026119414682880499.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite4026119414682880499.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/adam-cli.TransformFeaturesSuite4431645104361948375.adam
/tmp/adamTestMvnhgcACDR/adam-cli.TransformFeaturesSuite4431645104361948375.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/adam-cli.TransformFeaturesSuite4431645104361948375.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/adam-cli.TransformFeaturesSuite4431645104361948375.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/adam-cli.TransformFeaturesSuite4431645104361948375.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/adam-cli.TransformFeaturesSuite4431645104361948375.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/adam-cli.TransformFeaturesSuite4431645104361948375.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/adam-cli.TransformFeaturesSuite4431645104361948375.adam/_references.avro
/tmp/adamTestMvnhgcACDR/adam-cli.TransformFeaturesSuite4431645104361948375.adam/_samples.avro
/tmp/adamTestMvnhgcACDR/adam-cli.TransformFeaturesSuite4431645104361948375.adam/_metadata
/tmp/adamTestMvnhgcACDR/adam-cli.TransformFeaturesSuite4431645104361948375.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/adam-cli.TransformFeaturesSuite4431645104361948375.adam/._samples.avro.crc
/tmp/adamTestMvnhgcACDR/adam-cli.TransformFeaturesSuite4431645104361948375.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite7168056256233539312
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite7404369224162172824
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite8064089124253305405
/tmp/adamTestMvnhgcACDR/6558311853121894698
/tmp/adamTestMvnhgcACDR/6558311853121894698/predicate.3.adam
/tmp/adamTestMvnhgcACDR/6558311853121894698/predicate.3.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/6558311853121894698/predicate.3.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/6558311853121894698/predicate.3.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/6558311853121894698/predicate.3.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/6558311853121894698/predicate.3.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/6558311853121894698/predicate.3.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/6558311853121894698/predicate.3.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/6558311853121894698/predicate.3.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/6558311853121894698/predicate.3.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/6558311853121894698/predicate.3.adam/_references.avro
/tmp/adamTestMvnhgcACDR/6558311853121894698/predicate.3.adam/_metadata
/tmp/adamTestMvnhgcACDR/6558311853121894698/predicate.3.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/6558311853121894698/predicate.3.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/6558311853121894698/predicate.3.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite2052587741201604992.adam
/tmp/adamTestMvnhgcACDR/TempSuite2052587741201604992.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite2052587741201604992.adam/.part-00000-e1727391-3c13-4e61-93f6-f16a2e934443-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite2052587741201604992.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite2052587741201604992.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite2052587741201604992.adam/part-00000-e1727391-3c13-4e61-93f6-f16a2e934443-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite2052587741201604992.adam/_samples.avro
/tmp/adamTestMvnhgcACDR/TempSuite2052587741201604992.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite2052587741201604992.adam/._samples.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite2052587741201604992.adam/._header.crc
/tmp/adamTestMvnhgcACDR/TempSuite2052587741201604992.adam/_header
/tmp/adamTestMvnhgcACDR/artificial.sam6315990665246022400.sam
/tmp/adamTestMvnhgcACDR/TempSuite5611027751170134096
/tmp/adamTestMvnhgcACDR/TempSuite1057665471103237447
/tmp/adamTestMvnhgcACDR/TempSuite6662127093409344815.bed
/tmp/adamTestMvnhgcACDR/TempSuite6662127093409344815.bed/.part-00003.crc
/tmp/adamTestMvnhgcACDR/TempSuite6662127093409344815.bed/.part-00000.crc
/tmp/adamTestMvnhgcACDR/TempSuite6662127093409344815.bed/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite6662127093409344815.bed/part-00003
/tmp/adamTestMvnhgcACDR/TempSuite6662127093409344815.bed/part-00000
/tmp/adamTestMvnhgcACDR/TempSuite6662127093409344815.bed/part-00002
/tmp/adamTestMvnhgcACDR/TempSuite6662127093409344815.bed/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite6662127093409344815.bed/.part-00002.crc
/tmp/adamTestMvnhgcACDR/TempSuite6662127093409344815.bed/part-00001
/tmp/adamTestMvnhgcACDR/TempSuite6662127093409344815.bed/.part-00001.crc
/tmp/adamTestMvnhgcACDR/TempSuite2128449547469986473.adam
/tmp/adamTestMvnhgcACDR/TempSuite2128449547469986473.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite2128449547469986473.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite2128449547469986473.adam/_partitionedByStartPos
/tmp/adamTestMvnhgcACDR/TempSuite2128449547469986473.adam/referenceName=13
/tmp/adamTestMvnhgcACDR/TempSuite2128449547469986473.adam/referenceName=13/positionBin=0
/tmp/adamTestMvnhgcACDR/TempSuite2128449547469986473.adam/referenceName=13/positionBin=0/part-00000-5da3ac74-5297-43bf-92d5-a6379960cad1.c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite2128449547469986473.adam/referenceName=13/positionBin=0/.part-00000-5da3ac74-5297-43bf-92d5-a6379960cad1.c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite2128449547469986473.adam/referenceName=1
/tmp/adamTestMvnhgcACDR/TempSuite2128449547469986473.adam/referenceName=1/positionBin=0
/tmp/adamTestMvnhgcACDR/TempSuite2128449547469986473.adam/referenceName=1/positionBin=0/part-00000-5da3ac74-5297-43bf-92d5-a6379960cad1.c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite2128449547469986473.adam/referenceName=1/positionBin=0/.part-00000-5da3ac74-5297-43bf-92d5-a6379960cad1.c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite2128449547469986473.adam/._partitionedByStartPos.crc
/tmp/adamTestMvnhgcACDR/TempSuite2128449547469986473.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite2128449547469986473.adam/referenceName=2
/tmp/adamTestMvnhgcACDR/TempSuite2128449547469986473.adam/referenceName=2/positionBin=0
/tmp/adamTestMvnhgcACDR/TempSuite2128449547469986473.adam/referenceName=2/positionBin=0/part-00000-5da3ac74-5297-43bf-92d5-a6379960cad1.c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite2128449547469986473.adam/referenceName=2/positionBin=0/.part-00000-5da3ac74-5297-43bf-92d5-a6379960cad1.c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite2128449547469986473.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite2128449547469986473.adam/._header.crc
/tmp/adamTestMvnhgcACDR/TempSuite2128449547469986473.adam/_header
/tmp/adamTestMvnhgcACDR/TempSuite6382708081752578812.adam
/tmp/adamTestMvnhgcACDR/TempSuite6382708081752578812.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite6382708081752578812.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite6382708081752578812.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite6382708081752578812.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/TempSuite6382708081752578812.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite6382708081752578812.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/TempSuite6382708081752578812.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite6382708081752578812.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite6382708081752578812.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite6382708081752578812.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite6382708081752578812.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite6382708081752578812.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite6382708081752578812.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite6382708081752578812.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite2351936254927236503
/tmp/adamTestMvnhgcACDR/TempSuite347555735488649255.adam
/tmp/adamTestMvnhgcACDR/TempSuite347555735488649255.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite347555735488649255.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite347555735488649255.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite347555735488649255.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/TempSuite347555735488649255.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite347555735488649255.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/TempSuite347555735488649255.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite347555735488649255.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite347555735488649255.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite347555735488649255.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite347555735488649255.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite347555735488649255.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite347555735488649255.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite347555735488649255.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite8962708845456965781
/tmp/adamTestMvnhgcACDR/TempSuite8651330218980209382.sam
/tmp/adamTestMvnhgcACDR/TempSuite1287908234555869591.adam
/tmp/adamTestMvnhgcACDR/TempSuite1287908234555869591.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite1287908234555869591.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite1287908234555869591.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite1287908234555869591.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite1287908234555869591.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite1287908234555869591.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite1287908234555869591.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite1287908234555869591.adam/_samples.avro
/tmp/adamTestMvnhgcACDR/TempSuite1287908234555869591.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite1287908234555869591.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite1287908234555869591.adam/._samples.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite1287908234555869591.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite1287908234555869591.adam/._header.crc
/tmp/adamTestMvnhgcACDR/TempSuite1287908234555869591.adam/_header
/tmp/adamTestMvnhgcACDR/TempSuite447645209314038723
/tmp/adamTestMvnhgcACDR/TempSuite5264340226883600719
/tmp/adamTestMvnhgcACDR/TempSuite1024641686641544015.adam
/tmp/adamTestMvnhgcACDR/TempSuite1024641686641544015.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite1024641686641544015.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite1024641686641544015.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite1024641686641544015.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite1024641686641544015.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite1024641686641544015.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite1024641686641544015.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite1024641686641544015.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite1024641686641544015.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite1024641686641544015.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite1024641686641544015.adam/._header.crc
/tmp/adamTestMvnhgcACDR/TempSuite1024641686641544015.adam/_header
/tmp/adamTestMvnhgcACDR/TempSuite992998515013597959
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite3006307524687798927
/tmp/adamTestMvnhgcACDR/TempSuite3693535138654854301
/tmp/adamTestMvnhgcACDR/TempSuite564510439914142675
/tmp/adamTestMvnhgcACDR/TempSuite1780341946494129469
/tmp/adamTestMvnhgcACDR/.SequenceDatasetSuite2713322777816467032.fasta.crc
/tmp/adamTestMvnhgcACDR/2618503392568829708
/tmp/adamTestMvnhgcACDR/2618503392568829708/.sorted-variants.lex.vcf.crc
/tmp/adamTestMvnhgcACDR/2618503392568829708/sorted-variants.lex.vcf
/tmp/adamTestMvnhgcACDR/TempSuite4267819181491149232.adam
/tmp/adamTestMvnhgcACDR/TempSuite4267819181491149232.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite4267819181491149232.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite4267819181491149232.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite4267819181491149232.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite4267819181491149232.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite4267819181491149232.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite4267819181491149232.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite4267819181491149232.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite4267819181491149232.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite4267819181491149232.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite4267819181491149232.adam/._header.crc
/tmp/adamTestMvnhgcACDR/TempSuite4267819181491149232.adam/_header
/tmp/adamTestMvnhgcACDR/TempSuite5187760191275044834
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite6483100036524409937
/tmp/adamTestMvnhgcACDR/TempSuite9062945794837850426.adam
/tmp/adamTestMvnhgcACDR/TempSuite9062945794837850426.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite9062945794837850426.adam/.part-00001-b1162474-bd6c-420e-b1ba-770365dd7148-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite9062945794837850426.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite9062945794837850426.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/TempSuite9062945794837850426.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/TempSuite9062945794837850426.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite9062945794837850426.adam/.part-00000-b1162474-bd6c-420e-b1ba-770365dd7148-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite9062945794837850426.adam/part-00002-b1162474-bd6c-420e-b1ba-770365dd7148-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite9062945794837850426.adam/part-00001-b1162474-bd6c-420e-b1ba-770365dd7148-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite9062945794837850426.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite9062945794837850426.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite9062945794837850426.adam/.part-00002-b1162474-bd6c-420e-b1ba-770365dd7148-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite9062945794837850426.adam/part-00000-b1162474-bd6c-420e-b1ba-770365dd7148-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite9062945794837850426.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite7587369932314999193
/tmp/adamTestMvnhgcACDR/5757222980876156571
/tmp/adamTestMvnhgcACDR/5757222980876156571/out.cram_tail
/tmp/adamTestMvnhgcACDR/5757222980876156571/out.cram_tail/.part-r-00003.cram.crc
/tmp/adamTestMvnhgcACDR/5757222980876156571/out.cram_tail/.part-r-00001.cram.crc
/tmp/adamTestMvnhgcACDR/5757222980876156571/out.cram_tail/_SUCCESS
/tmp/adamTestMvnhgcACDR/5757222980876156571/out.cram_tail/.part-r-00000.cram.crc
/tmp/adamTestMvnhgcACDR/5757222980876156571/out.cram_tail/part-r-00003.cram
/tmp/adamTestMvnhgcACDR/5757222980876156571/out.cram_tail/part-r-00000.cram
/tmp/adamTestMvnhgcACDR/5757222980876156571/out.cram_tail/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/5757222980876156571/out.cram_tail/part-r-00002.cram
/tmp/adamTestMvnhgcACDR/5757222980876156571/out.cram_tail/part-r-00001.cram
/tmp/adamTestMvnhgcACDR/5757222980876156571/out.cram_tail/.part-r-00002.cram.crc
/tmp/adamTestMvnhgcACDR/5757222980876156571/.out.cram.crc
/tmp/adamTestMvnhgcACDR/5757222980876156571/out.cram_head
/tmp/adamTestMvnhgcACDR/5757222980876156571/.out.cram_head.crc
/tmp/adamTestMvnhgcACDR/5757222980876156571/out.cram
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite2327709705780610549
/tmp/adamTestMvnhgcACDR/TempSuite4864018794790157625
/tmp/adamTestMvnhgcACDR/TempSuite4267819181491149232
/tmp/adamTestMvnhgcACDR/TempSuite6397412648610764201
/tmp/adamTestMvnhgcACDR/TempSuite6397412648610764201.adam
/tmp/adamTestMvnhgcACDR/TempSuite6397412648610764201.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite6397412648610764201.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite6397412648610764201.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite6397412648610764201.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite6397412648610764201.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite6397412648610764201.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite6397412648610764201.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite6397412648610764201.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite6397412648610764201.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite6397412648610764201.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite6397412648610764201.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite6397412648610764201.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite6397412648610764201.adam/_samples.avro
/tmp/adamTestMvnhgcACDR/TempSuite6397412648610764201.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite6397412648610764201.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite6397412648610764201.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite6397412648610764201.adam/._samples.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite6397412648610764201.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite2404215359736815121
/tmp/adamTestMvnhgcACDR/TempSuite3153227853513089016
/tmp/adamTestMvnhgcACDR/javaAC1042600661176864766
/tmp/adamTestMvnhgcACDR/javaAC1042600661176864766/testRdd.genotype.adam
/tmp/adamTestMvnhgcACDR/javaAC1042600661176864766/testRdd.genotype.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/javaAC1042600661176864766/testRdd.genotype.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/javaAC1042600661176864766/testRdd.genotype.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/javaAC1042600661176864766/testRdd.genotype.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/javaAC1042600661176864766/testRdd.genotype.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/javaAC1042600661176864766/testRdd.genotype.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/javaAC1042600661176864766/testRdd.genotype.adam/_references.avro
/tmp/adamTestMvnhgcACDR/javaAC1042600661176864766/testRdd.genotype.adam/_samples.avro
/tmp/adamTestMvnhgcACDR/javaAC1042600661176864766/testRdd.genotype.adam/_metadata
/tmp/adamTestMvnhgcACDR/javaAC1042600661176864766/testRdd.genotype.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/javaAC1042600661176864766/testRdd.genotype.adam/._samples.avro.crc
/tmp/adamTestMvnhgcACDR/javaAC1042600661176864766/testRdd.genotype.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/javaAC1042600661176864766/testRdd.genotype.adam/._header.crc
/tmp/adamTestMvnhgcACDR/javaAC1042600661176864766/testRdd.genotype.adam/_header
/tmp/adamTestMvnhgcACDR/TempSuite8076471048908780783
/tmp/adamTestMvnhgcACDR/TempSuite8007253771843745894.adam
/tmp/adamTestMvnhgcACDR/TempSuite8007253771843745894.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite8007253771843745894.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite8007253771843745894.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/TempSuite8007253771843745894.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/TempSuite8007253771843745894.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite8007253771843745894.adam/.part-00000-ced37bd8-7c4f-4824-9aec-ee351452c0a0-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite8007253771843745894.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite8007253771843745894.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite8007253771843745894.adam/part-00000-ced37bd8-7c4f-4824-9aec-ee351452c0a0-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite8007253771843745894.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/random.vcf8604132269032234871.vcf
/tmp/adamTestMvnhgcACDR/TempSuite6812057428708236296
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite8106460752191153900.adam
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite8106460752191153900.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite8106460752191153900.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite8106460752191153900.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite8106460752191153900.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite8106460752191153900.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite8106460752191153900.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite8106460752191153900.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite8106460752191153900.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite8106460752191153900.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite8106460752191153900.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite8106460752191153900.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite8106460752191153900.adam/_references.avro
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite8106460752191153900.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite8106460752191153900.adam/_metadata
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite8106460752191153900.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite8106460752191153900.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite3874538613112350935.adam
/tmp/adamTestMvnhgcACDR/TempSuite3874538613112350935.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite3874538613112350935.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite3874538613112350935.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite3874538613112350935.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite3874538613112350935.adam/part-00000-13ff0a53-f94e-4137-bf50-80ac8410ef27-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite3874538613112350935.adam/._header.crc
/tmp/adamTestMvnhgcACDR/TempSuite3874538613112350935.adam/_header
/tmp/adamTestMvnhgcACDR/TempSuite3874538613112350935.adam/.part-00000-13ff0a53-f94e-4137-bf50-80ac8410ef27-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite409521405512649096.adam
/tmp/adamTestMvnhgcACDR/TempSuite409521405512649096.adam/part-00001-68467f60-c40d-4b79-aafd-82db1b5eac56-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite409521405512649096.adam/.part-00001-68467f60-c40d-4b79-aafd-82db1b5eac56-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite409521405512649096.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite409521405512649096.adam/.part-00000-68467f60-c40d-4b79-aafd-82db1b5eac56-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite409521405512649096.adam/.part-00002-68467f60-c40d-4b79-aafd-82db1b5eac56-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite409521405512649096.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite409521405512649096.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite409521405512649096.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite409521405512649096.adam/part-00000-68467f60-c40d-4b79-aafd-82db1b5eac56-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite409521405512649096.adam/._header.crc
/tmp/adamTestMvnhgcACDR/TempSuite409521405512649096.adam/_header
/tmp/adamTestMvnhgcACDR/TempSuite409521405512649096.adam/part-00002-68467f60-c40d-4b79-aafd-82db1b5eac56-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite7416858071183701431
/tmp/adamTestMvnhgcACDR/javaAC8822757527098744480
/tmp/adamTestMvnhgcACDR/javaAC8822757527098744480/testRdd.read.adam
/tmp/adamTestMvnhgcACDR/javaAC8822757527098744480/testRdd.read.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/javaAC8822757527098744480/testRdd.read.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/javaAC8822757527098744480/testRdd.read.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/javaAC8822757527098744480/testRdd.read.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/javaAC8822757527098744480/testRdd.read.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/javaAC8822757527098744480/testRdd.read.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/javaAC8822757527098744480/testRdd.read.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/javaAC8822757527098744480/testRdd.read.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/javaAC8822757527098744480/testRdd.read.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/javaAC8822757527098744480/testRdd.read.adam/_references.avro
/tmp/adamTestMvnhgcACDR/javaAC8822757527098744480/testRdd.read.adam/_metadata
/tmp/adamTestMvnhgcACDR/javaAC8822757527098744480/testRdd.read.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/javaAC8822757527098744480/testRdd.read.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/javaAC8822757527098744480/testRdd.read.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/2260071063116185592
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite2080569020304243910.gff3
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite2080569020304243910.gff3/.part-00003.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite2080569020304243910.gff3/.part-00000.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite2080569020304243910.gff3/_SUCCESS
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite2080569020304243910.gff3/part-00003
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite2080569020304243910.gff3/part-00000
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite2080569020304243910.gff3/part-00002
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite2080569020304243910.gff3/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite2080569020304243910.gff3/.part-00002.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite2080569020304243910.gff3/part-00001
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite2080569020304243910.gff3/.part-00001.crc
/tmp/adamTestMvnhgcACDR/TempSuite749042013073102559.adam
/tmp/adamTestMvnhgcACDR/TempSuite749042013073102559.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite749042013073102559.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite749042013073102559.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite749042013073102559.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/TempSuite749042013073102559.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite749042013073102559.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/TempSuite749042013073102559.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite749042013073102559.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite749042013073102559.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite749042013073102559.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite749042013073102559.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite749042013073102559.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite749042013073102559.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite749042013073102559.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite2560949811124954930
/tmp/adamTestMvnhgcACDR/13996616880178119
/tmp/adamTestMvnhgcACDR/13996616880178119/artificial.cram
/tmp/adamTestMvnhgcACDR/13996616880178119/artificial.cram/_SUCCESS
/tmp/adamTestMvnhgcACDR/13996616880178119/artificial.cram/.part-r-00000.cram.crc
/tmp/adamTestMvnhgcACDR/13996616880178119/artificial.cram/part-r-00000.cram
/tmp/adamTestMvnhgcACDR/13996616880178119/artificial.cram/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite798710850563420974
/tmp/adamTestMvnhgcACDR/.TempSuite7354960947321348490.sam.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite8955331237641091689
/tmp/adamTestMvnhgcACDR/.FeatureDatasetFunctionsSuite6721161832124186894.gff3.crc
/tmp/adamTestMvnhgcACDR/TempSuite1026613924097915485
/tmp/adamTestMvnhgcACDR/TempSuite1382587969092533721
/tmp/adamTestMvnhgcACDR/TempSuite3969572151770167967.adam
/tmp/adamTestMvnhgcACDR/TempSuite3969572151770167967.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite3969572151770167967.adam/.part-00001-05308d89-75d1-46e7-a7b8-56dc4298c536-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite3969572151770167967.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite3969572151770167967.adam/part-00002-05308d89-75d1-46e7-a7b8-56dc4298c536-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite3969572151770167967.adam/.part-00000-05308d89-75d1-46e7-a7b8-56dc4298c536-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite3969572151770167967.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite3969572151770167967.adam/_samples.avro
/tmp/adamTestMvnhgcACDR/TempSuite3969572151770167967.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite3969572151770167967.adam/.part-00002-05308d89-75d1-46e7-a7b8-56dc4298c536-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite3969572151770167967.adam/._samples.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite3969572151770167967.adam/._header.crc
/tmp/adamTestMvnhgcACDR/TempSuite3969572151770167967.adam/_header
/tmp/adamTestMvnhgcACDR/TempSuite3969572151770167967.adam/part-00000-05308d89-75d1-46e7-a7b8-56dc4298c536-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite3969572151770167967.adam/part-00001-05308d89-75d1-46e7-a7b8-56dc4298c536-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite9120051673154582862
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3693480118681600303
/tmp/adamTestMvnhgcACDR/unordered.sam7472870263246567884.sam
/tmp/adamTestMvnhgcACDR/TempSuite5721172186608432672.fq
/tmp/adamTestMvnhgcACDR/TempSuite5721172186608432672.fq/.part-00000.crc
/tmp/adamTestMvnhgcACDR/TempSuite5721172186608432672.fq/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite5721172186608432672.fq/part-00000
/tmp/adamTestMvnhgcACDR/TempSuite5721172186608432672.fq/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/4327184966131606998
/tmp/adamTestMvnhgcACDR/4327184966131606998/unordered.adam
/tmp/adamTestMvnhgcACDR/4327184966131606998/unordered.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/4327184966131606998/unordered.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/4327184966131606998/unordered.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/4327184966131606998/unordered.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/4327184966131606998/unordered.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/4327184966131606998/unordered.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/4327184966131606998/unordered.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/4327184966131606998/unordered.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/4327184966131606998/unordered.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/4327184966131606998/unordered.adam/_references.avro
/tmp/adamTestMvnhgcACDR/4327184966131606998/unordered.adam/_metadata
/tmp/adamTestMvnhgcACDR/4327184966131606998/unordered.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/4327184966131606998/unordered.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/4327184966131606998/unordered.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite1704457801902360665.adam
/tmp/adamTestMvnhgcACDR/TempSuite1704457801902360665.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite1704457801902360665.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite1704457801902360665.adam/_partitionedByStartPos
/tmp/adamTestMvnhgcACDR/TempSuite1704457801902360665.adam/referenceName=1
/tmp/adamTestMvnhgcACDR/TempSuite1704457801902360665.adam/referenceName=1/positionBin=0
/tmp/adamTestMvnhgcACDR/TempSuite1704457801902360665.adam/referenceName=1/positionBin=0/part-00000-7c2e0047-8aaa-4fa6-8caa-4d196ff57647.c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite1704457801902360665.adam/referenceName=1/positionBin=0/.part-00000-7c2e0047-8aaa-4fa6-8caa-4d196ff57647.c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite1704457801902360665.adam/._partitionedByStartPos.crc
/tmp/adamTestMvnhgcACDR/TempSuite1704457801902360665.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite1704457801902360665.adam/_samples.avro
/tmp/adamTestMvnhgcACDR/TempSuite1704457801902360665.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite1704457801902360665.adam/._samples.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite1704457801902360665.adam/._header.crc
/tmp/adamTestMvnhgcACDR/TempSuite1704457801902360665.adam/_header
/tmp/adamTestMvnhgcACDR/TempSuite3555717120533896886reads12.sam
/tmp/adamTestMvnhgcACDR/sample_coverage.bed9170049275452049351.bed
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite807572555856588392.adam
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite807572555856588392.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite807572555856588392.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite807572555856588392.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite807572555856588392.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite807572555856588392.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite807572555856588392.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite807572555856588392.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite807572555856588392.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite807572555856588392.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite807572555856588392.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite807572555856588392.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite807572555856588392.adam/_references.avro
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite807572555856588392.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite807572555856588392.adam/_metadata
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite807572555856588392.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite807572555856588392.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite8371062153354782187.adam
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite8371062153354782187.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite8371062153354782187.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite8371062153354782187.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite8371062153354782187.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite8371062153354782187.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite8371062153354782187.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite8371062153354782187.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite8371062153354782187.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite8371062153354782187.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite8371062153354782187.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite8371062153354782187.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite8371062153354782187.adam/_references.avro
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite8371062153354782187.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite8371062153354782187.adam/_metadata
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite8371062153354782187.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite8371062153354782187.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite8955331237641091689.interval_list
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite8955331237641091689.interval_list/.part-00003.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite8955331237641091689.interval_list/.part-00000.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite8955331237641091689.interval_list/_SUCCESS
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite8955331237641091689.interval_list/part-00003
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite8955331237641091689.interval_list/part-00000
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite8955331237641091689.interval_list/part-00002
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite8955331237641091689.interval_list/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite8955331237641091689.interval_list/.part-00002.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite8955331237641091689.interval_list/part-00001
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite8955331237641091689.interval_list/.part-00001.crc
/tmp/adamTestMvnhgcACDR/TempSuite4969828540389132024
/tmp/adamTestMvnhgcACDR/TempSuite6118985928979154238.bed
/tmp/adamTestMvnhgcACDR/TempSuite6118985928979154238.bed/.part-00000.crc
/tmp/adamTestMvnhgcACDR/TempSuite6118985928979154238.bed/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite6118985928979154238.bed/part-00000
/tmp/adamTestMvnhgcACDR/TempSuite6118985928979154238.bed/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/1575235942802-0
/tmp/adamTestMvnhgcACDR/1575235942802-0/test.vcf
/tmp/adamTestMvnhgcACDR/1575235942802-0/test.vcf/.part-r-00000.crc
/tmp/adamTestMvnhgcACDR/1575235942802-0/test.vcf/_SUCCESS
/tmp/adamTestMvnhgcACDR/1575235942802-0/test.vcf/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/1575235942802-0/test.vcf/part-r-00000
/tmp/adamTestMvnhgcACDR/1575235942802-0/test_single.vcf
/tmp/adamTestMvnhgcACDR/1575235942802-0/.test_single.vcf.crc
/tmp/adamTestMvnhgcACDR/unordered.sam7947972058444019854.sam
/tmp/adamTestMvnhgcACDR/TempSuite3765618463272173478.adam
/tmp/adamTestMvnhgcACDR/TempSuite3765618463272173478.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite3765618463272173478.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite3765618463272173478.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite3765618463272173478.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite3765618463272173478.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite3765618463272173478.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite3765618463272173478.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite3765618463272173478.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite3765618463272173478.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite3765618463272173478.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite3765618463272173478.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite3765618463272173478.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite3765618463272173478.adam/_samples.avro
/tmp/adamTestMvnhgcACDR/TempSuite3765618463272173478.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite3765618463272173478.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite3765618463272173478.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite3765618463272173478.adam/._samples.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite3765618463272173478.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite5913818809683048785.2.adam
/tmp/adamTestMvnhgcACDR/TempSuite5913818809683048785.2.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite5913818809683048785.2.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite5913818809683048785.2.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite5913818809683048785.2.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/TempSuite5913818809683048785.2.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite5913818809683048785.2.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/TempSuite5913818809683048785.2.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite5913818809683048785.2.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite5913818809683048785.2.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite5913818809683048785.2.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite5913818809683048785.2.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite5913818809683048785.2.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite5913818809683048785.2.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite5913818809683048785.2.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite6200121343117841637
/tmp/adamTestMvnhgcACDR/TempSuite1193387505187118856
/tmp/adamTestMvnhgcACDR/5081677860356741067
/tmp/adamTestMvnhgcACDR/5081677860356741067/unordered.sam
/tmp/adamTestMvnhgcACDR/5081677860356741067/.unordered.sam.crc
/tmp/adamTestMvnhgcACDR/unsorted.sam5765107259954119628.sam
/tmp/adamTestMvnhgcACDR/TempSuite3799428486083390308
/tmp/adamTestMvnhgcACDR/reads123072704860518904979
/tmp/adamTestMvnhgcACDR/reads123072704860518904979/reads12.fq
/tmp/adamTestMvnhgcACDR/reads123072704860518904979/reads12.fq/.part-00000.crc
/tmp/adamTestMvnhgcACDR/reads123072704860518904979/reads12.fq/_SUCCESS
/tmp/adamTestMvnhgcACDR/reads123072704860518904979/reads12.fq/part-00000
/tmp/adamTestMvnhgcACDR/reads123072704860518904979/reads12.fq/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/random.vcf1104840224157087062.vcf
/tmp/adamTestMvnhgcACDR/TempSuite2138060970104579040.bed
/tmp/adamTestMvnhgcACDR/TempSuite2138060970104579040.bed/.part-00000.crc
/tmp/adamTestMvnhgcACDR/TempSuite2138060970104579040.bed/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite2138060970104579040.bed/part-00000
/tmp/adamTestMvnhgcACDR/TempSuite2138060970104579040.bed/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite9135693613021339692.adam
/tmp/adamTestMvnhgcACDR/TempSuite9135693613021339692.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite9135693613021339692.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite9135693613021339692.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite9135693613021339692.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/TempSuite9135693613021339692.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite9135693613021339692.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/TempSuite9135693613021339692.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite9135693613021339692.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite9135693613021339692.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite9135693613021339692.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite9135693613021339692.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite9135693613021339692.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite9135693613021339692.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite9135693613021339692.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite4481969272815945488
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3120749399138817176.gtf
/tmp/adamTestMvnhgcACDR/6797107944924675623
/tmp/adamTestMvnhgcACDR/6797107944924675623/ordered.sam
/tmp/adamTestMvnhgcACDR/6797107944924675623/.ordered.sam.crc
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite4858333280945404989.adam
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite4858333280945404989.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite4858333280945404989.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite4858333280945404989.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite4858333280945404989.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite4858333280945404989.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite4858333280945404989.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite4858333280945404989.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite4858333280945404989.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite4858333280945404989.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite4858333280945404989.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite4858333280945404989.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite4858333280945404989.adam/_references.avro
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite4858333280945404989.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite4858333280945404989.adam/_metadata
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite4858333280945404989.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite4858333280945404989.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite6790187686920301399
/tmp/adamTestMvnhgcACDR/TempSuite398815801551784536.bed
/tmp/adamTestMvnhgcACDR/TempSuite398815801551784536.bed/.part-00003.crc
/tmp/adamTestMvnhgcACDR/TempSuite398815801551784536.bed/.part-00000.crc
/tmp/adamTestMvnhgcACDR/TempSuite398815801551784536.bed/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite398815801551784536.bed/part-00003
/tmp/adamTestMvnhgcACDR/TempSuite398815801551784536.bed/part-00000
/tmp/adamTestMvnhgcACDR/TempSuite398815801551784536.bed/part-00002
/tmp/adamTestMvnhgcACDR/TempSuite398815801551784536.bed/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite398815801551784536.bed/.part-00002.crc
/tmp/adamTestMvnhgcACDR/TempSuite398815801551784536.bed/part-00001
/tmp/adamTestMvnhgcACDR/TempSuite398815801551784536.bed/.part-00001.crc
/tmp/adamTestMvnhgcACDR/sorted-variants.lex.vcf127865213091244679.lex.vcf
/tmp/adamTestMvnhgcACDR/TempSuite8506811954181045849
/tmp/adamTestMvnhgcACDR/TempSuite6856782070898169762
/tmp/adamTestMvnhgcACDR/javaAC8795497385448517947
/tmp/adamTestMvnhgcACDR/javaAC8795497385448517947/testRdd.slices.adam
/tmp/adamTestMvnhgcACDR/javaAC8795497385448517947/testRdd.slices.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/javaAC8795497385448517947/testRdd.slices.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/javaAC8795497385448517947/testRdd.slices.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/javaAC8795497385448517947/testRdd.slices.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/javaAC8795497385448517947/testRdd.slices.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/javaAC8795497385448517947/testRdd.slices.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/javaAC8795497385448517947/testRdd.slices.adam/_references.avro
/tmp/adamTestMvnhgcACDR/javaAC8795497385448517947/testRdd.slices.adam/_metadata
/tmp/adamTestMvnhgcACDR/javaAC8795497385448517947/testRdd.slices.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/javaAC8795497385448517947/testRdd.slices.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/1575236139964-0
/tmp/adamTestMvnhgcACDR/1575236139964-0/bamReads.adam
/tmp/adamTestMvnhgcACDR/1575236139964-0/bamReads.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/1575236139964-0/bamReads.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/1575236139964-0/bamReads.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/1575236139964-0/bamReads.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/1575236139964-0/bamReads.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/1575236139964-0/bamReads.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/1575236139964-0/bamReads.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/1575236139964-0/bamReads.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/1575236139964-0/bamReads.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/1575236139964-0/bamReads.adam/_references.avro
/tmp/adamTestMvnhgcACDR/1575236139964-0/bamReads.adam/_metadata
/tmp/adamTestMvnhgcACDR/1575236139964-0/bamReads.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/1575236139964-0/bamReads.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/1575236139964-0/bamReads.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite4999219286119950797.fa
/tmp/adamTestMvnhgcACDR/TempSuite4999219286119950797.fa/.part-00000.crc
/tmp/adamTestMvnhgcACDR/TempSuite4999219286119950797.fa/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite4999219286119950797.fa/part-00000
/tmp/adamTestMvnhgcACDR/TempSuite4999219286119950797.fa/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite4684309256660201605.adam
/tmp/adamTestMvnhgcACDR/TempSuite4684309256660201605.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite4684309256660201605.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite4684309256660201605.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/TempSuite4684309256660201605.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/TempSuite4684309256660201605.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite4684309256660201605.adam/.part-00000-226144b5-de74-4e4f-9de8-3d50bf278d11-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite4684309256660201605.adam/part-00000-226144b5-de74-4e4f-9de8-3d50bf278d11-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite4684309256660201605.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite4684309256660201605.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite4684309256660201605.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite464905129341494946
/tmp/adamTestMvnhgcACDR/TempSuite4448274442845848114.adam
/tmp/adamTestMvnhgcACDR/TempSuite4448274442845848114.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite4448274442845848114.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite4448274442845848114.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite4448274442845848114.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite4448274442845848114.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite4448274442845848114.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite4448274442845848114.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite4448274442845848114.adam/_samples.avro
/tmp/adamTestMvnhgcACDR/TempSuite4448274442845848114.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite4448274442845848114.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite4448274442845848114.adam/._samples.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite4448274442845848114.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite4448274442845848114.adam/._header.crc
/tmp/adamTestMvnhgcACDR/TempSuite4448274442845848114.adam/_header
/tmp/adamTestMvnhgcACDR/TempSuite1374178585395327694
/tmp/adamTestMvnhgcACDR/TempSuite6885583404496750938
/tmp/adamTestMvnhgcACDR/TempSuite7683387226467173536.bed
/tmp/adamTestMvnhgcACDR/TempSuite7683387226467173536.bed/.part-00000.crc
/tmp/adamTestMvnhgcACDR/TempSuite7683387226467173536.bed/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite7683387226467173536.bed/part-00000
/tmp/adamTestMvnhgcACDR/TempSuite7683387226467173536.bed/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3087245584093931219.interval_list
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3087245584093931219.interval_list/.part-00003.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3087245584093931219.interval_list/.part-00000.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3087245584093931219.interval_list/_SUCCESS
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3087245584093931219.interval_list/part-00003
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3087245584093931219.interval_list/part-00000
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3087245584093931219.interval_list/part-00002
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3087245584093931219.interval_list/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3087245584093931219.interval_list/.part-00002.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3087245584093931219.interval_list/part-00001
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3087245584093931219.interval_list/.part-00001.crc
/tmp/adamTestMvnhgcACDR/TempSuite5601637577939345464
/tmp/adamTestMvnhgcACDR/TempSuite4624221362092591506.adam
/tmp/adamTestMvnhgcACDR/TempSuite4624221362092591506.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite4624221362092591506.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite4624221362092591506.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/TempSuite4624221362092591506.adam/part-00002-020948eb-2a78-4d60-b76f-40cc96ed79cc-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite4624221362092591506.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/TempSuite4624221362092591506.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite4624221362092591506.adam/.part-00001-020948eb-2a78-4d60-b76f-40cc96ed79cc-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite4624221362092591506.adam/part-00001-020948eb-2a78-4d60-b76f-40cc96ed79cc-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite4624221362092591506.adam/part-00000-020948eb-2a78-4d60-b76f-40cc96ed79cc-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite4624221362092591506.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite4624221362092591506.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite4624221362092591506.adam/.part-00002-020948eb-2a78-4d60-b76f-40cc96ed79cc-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite4624221362092591506.adam/.part-00000-020948eb-2a78-4d60-b76f-40cc96ed79cc-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite4624221362092591506.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite3223601362522998752.adam
/tmp/adamTestMvnhgcACDR/TempSuite3223601362522998752.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite3223601362522998752.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite3223601362522998752.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite3223601362522998752.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite3223601362522998752.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite3223601362522998752.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite3223601362522998752.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite3223601362522998752.adam/_samples.avro
/tmp/adamTestMvnhgcACDR/TempSuite3223601362522998752.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite3223601362522998752.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite3223601362522998752.adam/._samples.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite3223601362522998752.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite3223601362522998752.adam/._header.crc
/tmp/adamTestMvnhgcACDR/TempSuite3223601362522998752.adam/_header
/tmp/adamTestMvnhgcACDR/3981355068756763595
/tmp/adamTestMvnhgcACDR/3981355068756763595/.sorted.lex.vcf.crc
/tmp/adamTestMvnhgcACDR/3981355068756763595/sorted.lex.vcf
/tmp/adamTestMvnhgcACDR/TempSuite9176178861946841489.fq
/tmp/adamTestMvnhgcACDR/TempSuite9176178861946841489.fq/.part-00000.crc
/tmp/adamTestMvnhgcACDR/TempSuite9176178861946841489.fq/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite9176178861946841489.fq/part-00000
/tmp/adamTestMvnhgcACDR/TempSuite9176178861946841489.fq/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite7197601055103756772.bed
/tmp/adamTestMvnhgcACDR/TempSuite7197601055103756772.bed/.part-00003.crc
/tmp/adamTestMvnhgcACDR/TempSuite7197601055103756772.bed/.part-00000.crc
/tmp/adamTestMvnhgcACDR/TempSuite7197601055103756772.bed/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite7197601055103756772.bed/part-00003
/tmp/adamTestMvnhgcACDR/TempSuite7197601055103756772.bed/part-00000
/tmp/adamTestMvnhgcACDR/TempSuite7197601055103756772.bed/part-00002
/tmp/adamTestMvnhgcACDR/TempSuite7197601055103756772.bed/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite7197601055103756772.bed/.part-00002.crc
/tmp/adamTestMvnhgcACDR/TempSuite7197601055103756772.bed/part-00001
/tmp/adamTestMvnhgcACDR/TempSuite7197601055103756772.bed/.part-00001.crc
/tmp/adamTestMvnhgcACDR/TempSuite8348664331348856828.adam
/tmp/adamTestMvnhgcACDR/TempSuite8348664331348856828.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite8348664331348856828.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite8348664331348856828.adam/_partitionedByStartPos
/tmp/adamTestMvnhgcACDR/TempSuite8348664331348856828.adam/referenceName=1
/tmp/adamTestMvnhgcACDR/TempSuite8348664331348856828.adam/referenceName=1/positionBin=0
/tmp/adamTestMvnhgcACDR/TempSuite8348664331348856828.adam/referenceName=1/positionBin=0/part-00000-896e27b6-454e-4a82-880b-59e358767bf7.c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite8348664331348856828.adam/referenceName=1/positionBin=0/.part-00000-896e27b6-454e-4a82-880b-59e358767bf7.c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite8348664331348856828.adam/referenceName=1/positionBin=169
/tmp/adamTestMvnhgcACDR/TempSuite8348664331348856828.adam/referenceName=1/positionBin=169/.part-00001-896e27b6-454e-4a82-880b-59e358767bf7.c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite8348664331348856828.adam/referenceName=1/positionBin=169/part-00001-896e27b6-454e-4a82-880b-59e358767bf7.c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite8348664331348856828.adam/referenceName=1/positionBin=14
/tmp/adamTestMvnhgcACDR/TempSuite8348664331348856828.adam/referenceName=1/positionBin=14/part-00000-896e27b6-454e-4a82-880b-59e358767bf7.c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite8348664331348856828.adam/referenceName=1/positionBin=14/.part-00000-896e27b6-454e-4a82-880b-59e358767bf7.c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite8348664331348856828.adam/referenceName=1/positionBin=240
/tmp/adamTestMvnhgcACDR/TempSuite8348664331348856828.adam/referenceName=1/positionBin=240/part-00002-896e27b6-454e-4a82-880b-59e358767bf7.c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite8348664331348856828.adam/referenceName=1/positionBin=240/.part-00002-896e27b6-454e-4a82-880b-59e358767bf7.c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite8348664331348856828.adam/._partitionedByStartPos.crc
/tmp/adamTestMvnhgcACDR/TempSuite8348664331348856828.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite8348664331348856828.adam/_samples.avro
/tmp/adamTestMvnhgcACDR/TempSuite8348664331348856828.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite8348664331348856828.adam/._samples.avro.crc
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite7455615247852564207.adam
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite7455615247852564207.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite7455615247852564207.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite7455615247852564207.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite7455615247852564207.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite7455615247852564207.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite7455615247852564207.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite7455615247852564207.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite7455615247852564207.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite7455615247852564207.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite7455615247852564207.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite7455615247852564207.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite7455615247852564207.adam/_references.avro
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite7455615247852564207.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite7455615247852564207.adam/_metadata
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite7455615247852564207.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite7455615247852564207.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite6790187686920301399.adam
/tmp/adamTestMvnhgcACDR/TempSuite6790187686920301399.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite6790187686920301399.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite6790187686920301399.adam/.part-00000-2f9cb0cf-bb96-4999-ac4a-61da5cf9f2cf-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite6790187686920301399.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite6790187686920301399.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite6790187686920301399.adam/._header.crc
/tmp/adamTestMvnhgcACDR/TempSuite6790187686920301399.adam/_header
/tmp/adamTestMvnhgcACDR/TempSuite6790187686920301399.adam/part-00000-2f9cb0cf-bb96-4999-ac4a-61da5cf9f2cf-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite7672199439707632496.bed
/tmp/adamTestMvnhgcACDR/TempSuite7672199439707632496.bed/.part-00000.crc
/tmp/adamTestMvnhgcACDR/TempSuite7672199439707632496.bed/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite7672199439707632496.bed/part-00000
/tmp/adamTestMvnhgcACDR/TempSuite7672199439707632496.bed/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite7801777264983491193_1.fq
/tmp/adamTestMvnhgcACDR/TempSuite6812328422181758767.adam
/tmp/adamTestMvnhgcACDR/TempSuite6812328422181758767.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite6812328422181758767.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite6812328422181758767.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite6812328422181758767.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite6812328422181758767.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite6812328422181758767.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite6812328422181758767.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite6812328422181758767.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite6812328422181758767.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite6812328422181758767.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite6812328422181758767.adam/._header.crc
/tmp/adamTestMvnhgcACDR/TempSuite6812328422181758767.adam/_header
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite7404369224162172824.interval_list
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite7404369224162172824.interval_list/.part-00003.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite7404369224162172824.interval_list/.part-00000.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite7404369224162172824.interval_list/_SUCCESS
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite7404369224162172824.interval_list/part-00003
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite7404369224162172824.interval_list/part-00000
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite7404369224162172824.interval_list/part-00002
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite7404369224162172824.interval_list/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite7404369224162172824.interval_list/.part-00002.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite7404369224162172824.interval_list/part-00001
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite7404369224162172824.interval_list/.part-00001.crc
/tmp/adamTestMvnhgcACDR/580573258634060668
/tmp/adamTestMvnhgcACDR/580573258634060668/predicate.2.adam
/tmp/adamTestMvnhgcACDR/580573258634060668/predicate.2.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/580573258634060668/predicate.2.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/580573258634060668/predicate.2.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/580573258634060668/predicate.2.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/580573258634060668/predicate.2.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/580573258634060668/predicate.2.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/580573258634060668/predicate.2.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/580573258634060668/predicate.2.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/580573258634060668/predicate.2.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/580573258634060668/predicate.2.adam/_references.avro
/tmp/adamTestMvnhgcACDR/580573258634060668/predicate.2.adam/_metadata
/tmp/adamTestMvnhgcACDR/580573258634060668/predicate.2.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/580573258634060668/predicate.2.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/580573258634060668/predicate.2.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite5187760191275044834.adam
/tmp/adamTestMvnhgcACDR/TempSuite5187760191275044834.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite5187760191275044834.adam/.part-00000-03eb10d2-8ac3-44a5-aadc-2043e9f2dd8d-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite5187760191275044834.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite5187760191275044834.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite5187760191275044834.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite5187760191275044834.adam/part-00000-03eb10d2-8ac3-44a5-aadc-2043e9f2dd8d-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite4448274442845848114
/tmp/adamTestMvnhgcACDR/sample1.queryname.sam8356525171844678477.queryname.sam
/tmp/adamTestMvnhgcACDR/6884591430309392180
/tmp/adamTestMvnhgcACDR/6884591430309392180/unordered.sam
/tmp/adamTestMvnhgcACDR/6884591430309392180/.unordered.sam.crc
/tmp/adamTestMvnhgcACDR/TempSuite977385864267069468.adam
/tmp/adamTestMvnhgcACDR/TempSuite977385864267069468.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite977385864267069468.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite977385864267069468.adam/_partitionedByStartPos
/tmp/adamTestMvnhgcACDR/TempSuite977385864267069468.adam/referenceName=1
/tmp/adamTestMvnhgcACDR/TempSuite977385864267069468.adam/referenceName=1/positionBin=0
/tmp/adamTestMvnhgcACDR/TempSuite977385864267069468.adam/referenceName=1/positionBin=0/.part-00000-8681f397-46d3-4e7f-929e-3ee7bcfdbdf5.c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite977385864267069468.adam/referenceName=1/positionBin=0/part-00000-8681f397-46d3-4e7f-929e-3ee7bcfdbdf5.c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite977385864267069468.adam/referenceName=1/positionBin=169
/tmp/adamTestMvnhgcACDR/TempSuite977385864267069468.adam/referenceName=1/positionBin=169/part-00001-8681f397-46d3-4e7f-929e-3ee7bcfdbdf5.c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite977385864267069468.adam/referenceName=1/positionBin=169/.part-00001-8681f397-46d3-4e7f-929e-3ee7bcfdbdf5.c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite977385864267069468.adam/referenceName=1/positionBin=14
/tmp/adamTestMvnhgcACDR/TempSuite977385864267069468.adam/referenceName=1/positionBin=14/.part-00000-8681f397-46d3-4e7f-929e-3ee7bcfdbdf5.c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite977385864267069468.adam/referenceName=1/positionBin=14/part-00000-8681f397-46d3-4e7f-929e-3ee7bcfdbdf5.c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite977385864267069468.adam/referenceName=1/positionBin=240
/tmp/adamTestMvnhgcACDR/TempSuite977385864267069468.adam/referenceName=1/positionBin=240/.part-00002-8681f397-46d3-4e7f-929e-3ee7bcfdbdf5.c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite977385864267069468.adam/referenceName=1/positionBin=240/part-00002-8681f397-46d3-4e7f-929e-3ee7bcfdbdf5.c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite977385864267069468.adam/._partitionedByStartPos.crc
/tmp/adamTestMvnhgcACDR/TempSuite977385864267069468.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite977385864267069468.adam/_samples.avro
/tmp/adamTestMvnhgcACDR/TempSuite977385864267069468.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite977385864267069468.adam/._samples.avro.crc
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite3802607657297576319
/tmp/adamTestMvnhgcACDR/265763507937986140
/tmp/adamTestMvnhgcACDR/265763507937986140/ordered.sam
/tmp/adamTestMvnhgcACDR/265763507937986140/.ordered.sam.crc
/tmp/adamTestMvnhgcACDR/javaAC6031844147342153344
/tmp/adamTestMvnhgcACDR/javaAC6031844147342153344/testRdd.feature.adam
/tmp/adamTestMvnhgcACDR/javaAC6031844147342153344/testRdd.feature.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/javaAC6031844147342153344/testRdd.feature.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnhgcACDR/javaAC6031844147342153344/testRdd.feature.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/javaAC6031844147342153344/testRdd.feature.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/javaAC6031844147342153344/testRdd.feature.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/javaAC6031844147342153344/testRdd.feature.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/javaAC6031844147342153344/testRdd.feature.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/javaAC6031844147342153344/testRdd.feature.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnhgcACDR/javaAC6031844147342153344/testRdd.feature.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/javaAC6031844147342153344/testRdd.feature.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnhgcACDR/javaAC6031844147342153344/testRdd.feature.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/javaAC6031844147342153344/testRdd.feature.adam/_references.avro
/tmp/adamTestMvnhgcACDR/javaAC6031844147342153344/testRdd.feature.adam/_samples.avro
/tmp/adamTestMvnhgcACDR/javaAC6031844147342153344/testRdd.feature.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/javaAC6031844147342153344/testRdd.feature.adam/_metadata
/tmp/adamTestMvnhgcACDR/javaAC6031844147342153344/testRdd.feature.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/javaAC6031844147342153344/testRdd.feature.adam/._samples.avro.crc
/tmp/adamTestMvnhgcACDR/javaAC6031844147342153344/testRdd.feature.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/4509016007656103955
/tmp/adamTestMvnhgcACDR/4509016007656103955/ordered.sam
/tmp/adamTestMvnhgcACDR/4509016007656103955/.ordered.sam.crc
/tmp/adamTestMvnhgcACDR/TempSuite515144778960258504
/tmp/adamTestMvnhgcACDR/TempSuite1818860990047779074.adam
/tmp/adamTestMvnhgcACDR/TempSuite1818860990047779074.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite1818860990047779074.adam/.part-00000-42d6b8ba-afaf-49c2-9005-b222d508dba8-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite1818860990047779074.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite1818860990047779074.adam/part-00000-42d6b8ba-afaf-49c2-9005-b222d508dba8-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite1818860990047779074.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite1818860990047779074.adam/_samples.avro
/tmp/adamTestMvnhgcACDR/TempSuite1818860990047779074.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite1818860990047779074.adam/._samples.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite1818860990047779074.adam/._header.crc
/tmp/adamTestMvnhgcACDR/TempSuite1818860990047779074.adam/_header
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite865937232779179271.narrowPeak
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite865937232779179271.narrowPeak/.part-00003.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite865937232779179271.narrowPeak/.part-00000.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite865937232779179271.narrowPeak/_SUCCESS
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite865937232779179271.narrowPeak/part-00003
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite865937232779179271.narrowPeak/part-00000
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite865937232779179271.narrowPeak/part-00002
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite865937232779179271.narrowPeak/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite865937232779179271.narrowPeak/.part-00002.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite865937232779179271.narrowPeak/part-00001
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite865937232779179271.narrowPeak/.part-00001.crc
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite511152407322995713.adam
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite511152407322995713.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite511152407322995713.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite511152407322995713.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite511152407322995713.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite511152407322995713.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite511152407322995713.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite511152407322995713.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite511152407322995713.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite511152407322995713.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite511152407322995713.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite511152407322995713.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite511152407322995713.adam/_references.avro
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite511152407322995713.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite511152407322995713.adam/_metadata
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite511152407322995713.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite511152407322995713.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite6448096291304218415.bed
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite6448096291304218415.bed/.part-00003.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite6448096291304218415.bed/.part-00000.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite6448096291304218415.bed/_SUCCESS
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite6448096291304218415.bed/part-00003
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite6448096291304218415.bed/part-00000
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite6448096291304218415.bed/part-00002
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite6448096291304218415.bed/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite6448096291304218415.bed/.part-00002.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite6448096291304218415.bed/part-00001
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite6448096291304218415.bed/.part-00001.crc
/tmp/adamTestMvnhgcACDR/3446373209482261560
/tmp/adamTestMvnhgcACDR/3446373209482261560/variants.adam
/tmp/adamTestMvnhgcACDR/3446373209482261560/variants.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/3446373209482261560/variants.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/3446373209482261560/variants.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/3446373209482261560/variants.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/3446373209482261560/variants.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/3446373209482261560/variants.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/3446373209482261560/variants.adam/_references.avro
/tmp/adamTestMvnhgcACDR/3446373209482261560/variants.adam/_metadata
/tmp/adamTestMvnhgcACDR/3446373209482261560/variants.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/3446373209482261560/variants.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/3446373209482261560/variants.adam/._header.crc
/tmp/adamTestMvnhgcACDR/3446373209482261560/variants.adam/_header
/tmp/adamTestMvnhgcACDR/TempSuite14764225032285462
/tmp/adamTestMvnhgcACDR/TempSuite9115056520247422398
/tmp/adamTestMvnhgcACDR/TempSuite704399138746853997.adam
/tmp/adamTestMvnhgcACDR/TempSuite704399138746853997.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite704399138746853997.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite704399138746853997.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite704399138746853997.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/TempSuite704399138746853997.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite704399138746853997.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/TempSuite704399138746853997.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite704399138746853997.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite704399138746853997.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite704399138746853997.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite704399138746853997.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite704399138746853997.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite704399138746853997.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite704399138746853997.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite5276092634507788799.bed
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite1205222322266608558.gff3
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite1205222322266608558.gff3/.part-00003.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite1205222322266608558.gff3/.part-00000.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite1205222322266608558.gff3/_SUCCESS
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite1205222322266608558.gff3/part-00003
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite1205222322266608558.gff3/part-00000
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite1205222322266608558.gff3/part-00002
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite1205222322266608558.gff3/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite1205222322266608558.gff3/.part-00002.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite1205222322266608558.gff3/part-00001
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite1205222322266608558.gff3/.part-00001.crc
/tmp/adamTestMvnhgcACDR/TempSuite1591167534300004552
/tmp/adamTestMvnhgcACDR/TempSuite1675114548622646190.adam
/tmp/adamTestMvnhgcACDR/TempSuite1675114548622646190.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite1675114548622646190.adam/part-00000-f4d7f417-ef85-4361-b790-77e870ea9b82-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite1675114548622646190.adam/.part-00002-f4d7f417-ef85-4361-b790-77e870ea9b82-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite1675114548622646190.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite1675114548622646190.adam/.part-00000-f4d7f417-ef85-4361-b790-77e870ea9b82-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite1675114548622646190.adam/part-00001-f4d7f417-ef85-4361-b790-77e870ea9b82-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite1675114548622646190.adam/part-00002-f4d7f417-ef85-4361-b790-77e870ea9b82-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite1675114548622646190.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite1675114548622646190.adam/_samples.avro
/tmp/adamTestMvnhgcACDR/TempSuite1675114548622646190.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite1675114548622646190.adam/._samples.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite1675114548622646190.adam/._header.crc
/tmp/adamTestMvnhgcACDR/TempSuite1675114548622646190.adam/_header
/tmp/adamTestMvnhgcACDR/TempSuite1675114548622646190.adam/.part-00001-f4d7f417-ef85-4361-b790-77e870ea9b82-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite811344972347523577
/tmp/adamTestMvnhgcACDR/TempSuite7441435335347501315.fq
/tmp/adamTestMvnhgcACDR/TempSuite7441435335347501315.fq/.part-00000.crc
/tmp/adamTestMvnhgcACDR/TempSuite7441435335347501315.fq/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite7441435335347501315.fq/part-00000
/tmp/adamTestMvnhgcACDR/TempSuite7441435335347501315.fq/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite8520129960102117913
/tmp/adamTestMvnhgcACDR/TempSuite9062945794837850426
/tmp/adamTestMvnhgcACDR/TempSuite4212110381731842350
/tmp/adamTestMvnhgcACDR/TempSuite2351936254927236503.adam
/tmp/adamTestMvnhgcACDR/TempSuite2351936254927236503.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite2351936254927236503.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite2351936254927236503.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite2351936254927236503.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/TempSuite2351936254927236503.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite2351936254927236503.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/TempSuite2351936254927236503.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite2351936254927236503.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite2351936254927236503.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite2351936254927236503.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite2351936254927236503.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite2351936254927236503.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite2351936254927236503.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite2351936254927236503.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite409521405512649096
/tmp/adamTestMvnhgcACDR/TempSuite4864018794790157625.adam
/tmp/adamTestMvnhgcACDR/TempSuite4864018794790157625.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite4864018794790157625.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite4864018794790157625.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite4864018794790157625.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/TempSuite4864018794790157625.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite4864018794790157625.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/TempSuite4864018794790157625.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite4864018794790157625.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite4864018794790157625.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite4864018794790157625.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite4864018794790157625.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite4864018794790157625.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite4864018794790157625.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite4864018794790157625.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite3406156739935461473
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite1140291721255908590.fastq
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite1140291721255908590.fastq/.part-00003.crc
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite1140291721255908590.fastq/.part-00000.crc
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite1140291721255908590.fastq/_SUCCESS
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite1140291721255908590.fastq/part-00003
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite1140291721255908590.fastq/part-00000
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite1140291721255908590.fastq/part-00002
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite1140291721255908590.fastq/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite1140291721255908590.fastq/.part-00002.crc
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite1140291721255908590.fastq/part-00001
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite1140291721255908590.fastq/.part-00001.crc
/tmp/adamTestMvnhgcACDR/noqual5298791496868921244
/tmp/adamTestMvnhgcACDR/noqual5298791496868921244/noqualB.fastq
/tmp/adamTestMvnhgcACDR/noqual5298791496868921244/noqualB.fastq/.part-00000.crc
/tmp/adamTestMvnhgcACDR/noqual5298791496868921244/noqualB.fastq/_SUCCESS
/tmp/adamTestMvnhgcACDR/noqual5298791496868921244/noqualB.fastq/part-00000
/tmp/adamTestMvnhgcACDR/noqual5298791496868921244/noqualB.fastq/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/noqual5298791496868921244/noqualA.sam
/tmp/adamTestMvnhgcACDR/noqual5298791496868921244/noqualA.sam/part-r-00000.sam
/tmp/adamTestMvnhgcACDR/noqual5298791496868921244/noqualA.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnhgcACDR/noqual5298791496868921244/noqualA.sam/_SUCCESS
/tmp/adamTestMvnhgcACDR/noqual5298791496868921244/noqualA.sam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite3086599151240587060
/tmp/adamTestMvnhgcACDR/TempSuite3306659423439309349.adam
/tmp/adamTestMvnhgcACDR/TempSuite3306659423439309349.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite3306659423439309349.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite3306659423439309349.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite3306659423439309349.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite3306659423439309349.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite3306659423439309349.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite3306659423439309349.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite3306659423439309349.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite3306659423439309349.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite3306659423439309349.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite3306659423439309349.adam/._header.crc
/tmp/adamTestMvnhgcACDR/TempSuite3306659423439309349.adam/_header
/tmp/adamTestMvnhgcACDR/.FeatureDatasetFunctionsSuite5486887234343250604.bed.crc
/tmp/adamTestMvnhgcACDR/TempSuite4925139971946310260
/tmp/adamTestMvnhgcACDR/1797309345620801077
/tmp/adamTestMvnhgcACDR/1797309345620801077/binned.adam
/tmp/adamTestMvnhgcACDR/1797309345620801077/binned.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/1797309345620801077/binned.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/1797309345620801077/binned.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/1797309345620801077/binned.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/1797309345620801077/binned.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/1797309345620801077/binned.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/1797309345620801077/binned.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/1797309345620801077/binned.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/1797309345620801077/binned.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/1797309345620801077/binned.adam/_references.avro
/tmp/adamTestMvnhgcACDR/1797309345620801077/binned.adam/_metadata
/tmp/adamTestMvnhgcACDR/1797309345620801077/binned.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/1797309345620801077/binned.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/1797309345620801077/binned.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite7073876833156243539
/tmp/adamTestMvnhgcACDR/.ReadDatasetSuite3802607657297576319.fastq.crc
/tmp/adamTestMvnhgcACDR/TempSuite6592608344856157297.fq
/tmp/adamTestMvnhgcACDR/TempSuite6592608344856157297.fq/.part-00000.crc
/tmp/adamTestMvnhgcACDR/TempSuite6592608344856157297.fq/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite6592608344856157297.fq/part-00000
/tmp/adamTestMvnhgcACDR/TempSuite6592608344856157297.fq/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite5258799785258054349.adam
/tmp/adamTestMvnhgcACDR/TempSuite5258799785258054349.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite5258799785258054349.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite5258799785258054349.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite5258799785258054349.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/TempSuite5258799785258054349.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite5258799785258054349.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/TempSuite5258799785258054349.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite5258799785258054349.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite5258799785258054349.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite5258799785258054349.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite5258799785258054349.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite5258799785258054349.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite5258799785258054349.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite5258799785258054349.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/7633773125174607641
/tmp/adamTestMvnhgcACDR/7633773125174607641/variants.lex.adam
/tmp/adamTestMvnhgcACDR/7633773125174607641/variants.lex.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/7633773125174607641/variants.lex.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/7633773125174607641/variants.lex.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/7633773125174607641/variants.lex.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/7633773125174607641/variants.lex.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/7633773125174607641/variants.lex.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/7633773125174607641/variants.lex.adam/_references.avro
/tmp/adamTestMvnhgcACDR/7633773125174607641/variants.lex.adam/_metadata
/tmp/adamTestMvnhgcACDR/7633773125174607641/variants.lex.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/7633773125174607641/variants.lex.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/7633773125174607641/variants.lex.adam/._header.crc
/tmp/adamTestMvnhgcACDR/7633773125174607641/variants.lex.adam/_header
/tmp/adamTestMvnhgcACDR/TempSuite2560949811124954930.adam
/tmp/adamTestMvnhgcACDR/TempSuite2560949811124954930.adam/.part-00000-aff39553-8dfe-4f05-bc61-e932b4434bb7-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite2560949811124954930.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite2560949811124954930.adam/part-00000-aff39553-8dfe-4f05-bc61-e932b4434bb7-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite2560949811124954930.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite2560949811124954930.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite2560949811124954930.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite2560949811124954930.adam/._header.crc
/tmp/adamTestMvnhgcACDR/TempSuite2560949811124954930.adam/_header
/tmp/adamTestMvnhgcACDR/TempSuite4442581213868296653
/tmp/adamTestMvnhgcACDR/TempSuite5879238957005939337.adam
/tmp/adamTestMvnhgcACDR/TempSuite5879238957005939337.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite5879238957005939337.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite5879238957005939337.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite5879238957005939337.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite5879238957005939337.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite5879238957005939337.adam/._partitionMap.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite5879238957005939337.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/TempSuite5879238957005939337.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite5879238957005939337.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/TempSuite5879238957005939337.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite5879238957005939337.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite5879238957005939337.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite5879238957005939337.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite5879238957005939337.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite5879238957005939337.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite5879238957005939337.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite5879238957005939337.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite5879238957005939337.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite5879238957005939337.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite5879238957005939337.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite5879238957005939337.adam/_partitionMap.avro
/tmp/adamTestMvnhgcACDR/TempSuite5879238957005939337.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite2766532842293158868
/tmp/adamTestMvnhgcACDR/TempSuite2533057382558254605.adam
/tmp/adamTestMvnhgcACDR/TempSuite2533057382558254605.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite2533057382558254605.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite2533057382558254605.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite2533057382558254605.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite2533057382558254605.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite2533057382558254605.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite2533057382558254605.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite2533057382558254605.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite2533057382558254605.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite2533057382558254605.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite2533057382558254605.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite2533057382558254605.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite2533057382558254605.adam/_samples.avro
/tmp/adamTestMvnhgcACDR/TempSuite2533057382558254605.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite2533057382558254605.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite2533057382558254605.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite2533057382558254605.adam/._samples.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite2533057382558254605.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/4488575345822244514
/tmp/adamTestMvnhgcACDR/4488575345822244514/.artificial.cram.crc
/tmp/adamTestMvnhgcACDR/4488575345822244514/artificial.cram
/tmp/adamTestMvnhgcACDR/TempSuite6646904413480560893.adam
/tmp/adamTestMvnhgcACDR/TempSuite6646904413480560893.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite6646904413480560893.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite6646904413480560893.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite6646904413480560893.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite6646904413480560893.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite6646904413480560893.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite6646904413480560893.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite6646904413480560893.adam/_samples.avro
/tmp/adamTestMvnhgcACDR/TempSuite6646904413480560893.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite6646904413480560893.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite6646904413480560893.adam/._samples.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite6646904413480560893.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite6646904413480560893.adam/._header.crc
/tmp/adamTestMvnhgcACDR/TempSuite6646904413480560893.adam/_header
/tmp/adamTestMvnhgcACDR/TempSuite8232919176208803799.adam
/tmp/adamTestMvnhgcACDR/TempSuite8232919176208803799.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite8232919176208803799.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite8232919176208803799.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite8232919176208803799.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite8232919176208803799.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite8232919176208803799.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite8232919176208803799.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite8232919176208803799.adam/_samples.avro
/tmp/adamTestMvnhgcACDR/TempSuite8232919176208803799.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite8232919176208803799.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite8232919176208803799.adam/._samples.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite8232919176208803799.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite8232919176208803799.adam/._header.crc
/tmp/adamTestMvnhgcACDR/TempSuite8232919176208803799.adam/_header
/tmp/adamTestMvnhgcACDR/TempSuite7783448109029522527
/tmp/adamTestMvnhgcACDR/artificial.sam8933422755445665130.sam
/tmp/adamTestMvnhgcACDR/TempSuite4991757415649569495
/tmp/adamTestMvnhgcACDR/TempSuite8076471048908780783.fq
/tmp/adamTestMvnhgcACDR/TempSuite8076471048908780783.fq/.part-00000.crc
/tmp/adamTestMvnhgcACDR/TempSuite8076471048908780783.fq/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite8076471048908780783.fq/part-00000
/tmp/adamTestMvnhgcACDR/TempSuite8076471048908780783.fq/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite7549211454024137974
/tmp/adamTestMvnhgcACDR/TempSuite9200954415324538668
/tmp/adamTestMvnhgcACDR/TempSuite5218462496047592252_1.fq
/tmp/adamTestMvnhgcACDR/TempSuite5218462496047592252_1.fq/.part-00000.crc
/tmp/adamTestMvnhgcACDR/TempSuite5218462496047592252_1.fq/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite5218462496047592252_1.fq/part-00000
/tmp/adamTestMvnhgcACDR/TempSuite5218462496047592252_1.fq/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite2766532842293158868.adam
/tmp/adamTestMvnhgcACDR/TempSuite2766532842293158868.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite2766532842293158868.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite2766532842293158868.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite2766532842293158868.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/TempSuite2766532842293158868.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite2766532842293158868.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/TempSuite2766532842293158868.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite2766532842293158868.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite2766532842293158868.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite2766532842293158868.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite2766532842293158868.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite2766532842293158868.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite2766532842293158868.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite2766532842293158868.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite5328993267304299603
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite1209074005381871326
/tmp/adamTestMvnhgcACDR/.TempSuite5655763290433372346.bam.crc
/tmp/adamTestMvnhgcACDR/reads1389868437188777837
/tmp/adamTestMvnhgcACDR/reads1389868437188777837/reads1.fq
/tmp/adamTestMvnhgcACDR/reads1389868437188777837/reads1.fq/.part-00000.crc
/tmp/adamTestMvnhgcACDR/reads1389868437188777837/reads1.fq/_SUCCESS
/tmp/adamTestMvnhgcACDR/reads1389868437188777837/reads1.fq/part-00000
/tmp/adamTestMvnhgcACDR/reads1389868437188777837/reads1.fq/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/reads1389868437188777837/reads2.fq
/tmp/adamTestMvnhgcACDR/reads1389868437188777837/reads2.fq/.part-00000.crc
/tmp/adamTestMvnhgcACDR/reads1389868437188777837/reads2.fq/_SUCCESS
/tmp/adamTestMvnhgcACDR/reads1389868437188777837/reads2.fq/part-00000
/tmp/adamTestMvnhgcACDR/reads1389868437188777837/reads2.fq/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite1967541123875932591
/tmp/adamTestMvnhgcACDR/TempSuite7068581427797648415.bed
/tmp/adamTestMvnhgcACDR/TempSuite7068581427797648415.bed/.part-00000.crc
/tmp/adamTestMvnhgcACDR/TempSuite7068581427797648415.bed/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite7068581427797648415.bed/part-00000
/tmp/adamTestMvnhgcACDR/TempSuite7068581427797648415.bed/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite5979766811739700906
/tmp/adamTestMvnhgcACDR/TempSuite4755509820225742097
/tmp/adamTestMvnhgcACDR/TempSuite3469150209362260293_2.fq
/tmp/adamTestMvnhgcACDR/TempSuite3469150209362260293_2.fq/.part-00000.crc
/tmp/adamTestMvnhgcACDR/TempSuite3469150209362260293_2.fq/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite3469150209362260293_2.fq/part-00000
/tmp/adamTestMvnhgcACDR/TempSuite3469150209362260293_2.fq/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite6001121457888918426
/tmp/adamTestMvnhgcACDR/.FeatureDatasetFunctionsSuite8551916823004066557.bed.crc
/tmp/adamTestMvnhgcACDR/TempSuite3542152656175041241.adam
/tmp/adamTestMvnhgcACDR/TempSuite3542152656175041241.adam/.part-00001-4551e913-239c-4353-adba-e98c0b880cc3-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite3542152656175041241.adam/.part-00002-4551e913-239c-4353-adba-e98c0b880cc3-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite3542152656175041241.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite3542152656175041241.adam/part-00000-4551e913-239c-4353-adba-e98c0b880cc3-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite3542152656175041241.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite3542152656175041241.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/TempSuite3542152656175041241.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/TempSuite3542152656175041241.adam/part-00001-4551e913-239c-4353-adba-e98c0b880cc3-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite3542152656175041241.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite3542152656175041241.adam/part-00002-4551e913-239c-4353-adba-e98c0b880cc3-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite3542152656175041241.adam/.part-00000-4551e913-239c-4353-adba-e98c0b880cc3-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite3542152656175041241.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite3542152656175041241.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite3542152656175041241.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite8659998372925919615.adam
/tmp/adamTestMvnhgcACDR/TempSuite8659998372925919615.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite8659998372925919615.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite8659998372925919615.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite8659998372925919615.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite8659998372925919615.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite8659998372925919615.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite8659998372925919615.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite8659998372925919615.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite8659998372925919615.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite8659998372925919615.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite8659998372925919615.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite8659998372925919615.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite8659998372925919615.adam/_samples.avro
/tmp/adamTestMvnhgcACDR/TempSuite8659998372925919615.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite8659998372925919615.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite8659998372925919615.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite8659998372925919615.adam/._samples.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite8659998372925919615.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite8659998372925919615.adam/._header.crc
/tmp/adamTestMvnhgcACDR/TempSuite8659998372925919615.adam/_header
/tmp/adamTestMvnhgcACDR/TempSuite6594176872473818486.fa
/tmp/adamTestMvnhgcACDR/TempSuite6594176872473818486.fa/.part-00000.crc
/tmp/adamTestMvnhgcACDR/TempSuite6594176872473818486.fa/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite6594176872473818486.fa/part-00000
/tmp/adamTestMvnhgcACDR/TempSuite6594176872473818486.fa/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite1820738668687914326
/tmp/adamTestMvnhgcACDR/TempSuite7549211454024137974.adam
/tmp/adamTestMvnhgcACDR/TempSuite7549211454024137974.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite7549211454024137974.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite7549211454024137974.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite7549211454024137974.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite7549211454024137974.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite7549211454024137974.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite7549211454024137974.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite7549211454024137974.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite7549211454024137974.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite7549211454024137974.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4635387540668633945.bed
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4635387540668633945.bed/.part-00003.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4635387540668633945.bed/.part-00000.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4635387540668633945.bed/_SUCCESS
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4635387540668633945.bed/part-00003
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4635387540668633945.bed/part-00000
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4635387540668633945.bed/part-00002
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4635387540668633945.bed/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4635387540668633945.bed/.part-00002.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4635387540668633945.bed/part-00001
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4635387540668633945.bed/.part-00001.crc
/tmp/adamTestMvnhgcACDR/TempSuite6582420339643869815
/tmp/adamTestMvnhgcACDR/TempSuite9106438726582490344
/tmp/adamTestMvnhgcACDR/TempSuite8905956389754229240.bed
/tmp/adamTestMvnhgcACDR/TempSuite8905956389754229240.bed/.part-00000.crc
/tmp/adamTestMvnhgcACDR/TempSuite8905956389754229240.bed/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite8905956389754229240.bed/part-00000
/tmp/adamTestMvnhgcACDR/TempSuite8905956389754229240.bed/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite4362685159680375134
/tmp/adamTestMvnhgcACDR/javaAC8569317779530553445
/tmp/adamTestMvnhgcACDR/javaAC8569317779530553445/testRdd.sequences.adam
/tmp/adamTestMvnhgcACDR/javaAC8569317779530553445/testRdd.sequences.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/javaAC8569317779530553445/testRdd.sequences.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/javaAC8569317779530553445/testRdd.sequences.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/javaAC8569317779530553445/testRdd.sequences.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/javaAC8569317779530553445/testRdd.sequences.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/javaAC8569317779530553445/testRdd.sequences.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/javaAC8569317779530553445/testRdd.sequences.adam/_references.avro
/tmp/adamTestMvnhgcACDR/javaAC8569317779530553445/testRdd.sequences.adam/_metadata
/tmp/adamTestMvnhgcACDR/javaAC8569317779530553445/testRdd.sequences.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/javaAC8569317779530553445/testRdd.sequences.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/bqsr1823017560206881450
/tmp/adamTestMvnhgcACDR/bqsr1823017560206881450/bqsr1.bam
/tmp/adamTestMvnhgcACDR/bqsr1823017560206881450/.bqsr1.bam.crc
/tmp/adamTestMvnhgcACDR/TempSuite5141385622699565795
/tmp/adamTestMvnhgcACDR/TempSuite5879238957005939337
/tmp/adamTestMvnhgcACDR/TempSuite7354960947321348490.sam
/tmp/adamTestMvnhgcACDR/TempSuite6639770041014087114.adam
/tmp/adamTestMvnhgcACDR/TempSuite6639770041014087114.adam/part-00000-da9dd102-772a-4f9e-ba32-084ed3c83f33-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite6639770041014087114.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite6639770041014087114.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite6639770041014087114.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite6639770041014087114.adam/_samples.avro
/tmp/adamTestMvnhgcACDR/TempSuite6639770041014087114.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite6639770041014087114.adam/._samples.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite6639770041014087114.adam/._header.crc
/tmp/adamTestMvnhgcACDR/TempSuite6639770041014087114.adam/_header
/tmp/adamTestMvnhgcACDR/TempSuite6639770041014087114.adam/.part-00000-da9dd102-772a-4f9e-ba32-084ed3c83f33-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite6959228433280579059.gff3
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite6959228433280579059.gff3/.part-00003.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite6959228433280579059.gff3/.part-00000.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite6959228433280579059.gff3/_SUCCESS
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite6959228433280579059.gff3/part-00003
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite6959228433280579059.gff3/part-00000
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite6959228433280579059.gff3/part-00002
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite6959228433280579059.gff3/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite6959228433280579059.gff3/.part-00002.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite6959228433280579059.gff3/part-00001
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite6959228433280579059.gff3/.part-00001.crc
/tmp/adamTestMvnhgcACDR/TempSuite4855646693453521684.bed
/tmp/adamTestMvnhgcACDR/TempSuite4855646693453521684.bed/.part-00000.crc
/tmp/adamTestMvnhgcACDR/TempSuite4855646693453521684.bed/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite4855646693453521684.bed/part-00000
/tmp/adamTestMvnhgcACDR/TempSuite4855646693453521684.bed/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/bqsr1.sam8113722340205926068.sam
/tmp/adamTestMvnhgcACDR/5484832254174268574
/tmp/adamTestMvnhgcACDR/5484832254174268574/unordered.sam
/tmp/adamTestMvnhgcACDR/5484832254174268574/.unordered.sam.crc
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite9013762059705422443
/tmp/adamTestMvnhgcACDR/TempSuite8274044922258360219
/tmp/adamTestMvnhgcACDR/TempSuite8121238421656120568.bed
/tmp/adamTestMvnhgcACDR/TempSuite8121238421656120568.bed/.part-00000.crc
/tmp/adamTestMvnhgcACDR/TempSuite8121238421656120568.bed/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite8121238421656120568.bed/part-00000
/tmp/adamTestMvnhgcACDR/TempSuite8121238421656120568.bed/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/2623554992065837993
/tmp/adamTestMvnhgcACDR/2623554992065837993/sorted.sam
/tmp/adamTestMvnhgcACDR/2623554992065837993/.sorted.sam.crc
/tmp/adamTestMvnhgcACDR/TempSuite1348784608182402617.adam
/tmp/adamTestMvnhgcACDR/TempSuite1348784608182402617.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite1348784608182402617.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite1348784608182402617.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite1348784608182402617.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite1348784608182402617.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite1348784608182402617.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite1348784608182402617.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite1348784608182402617.adam/_samples.avro
/tmp/adamTestMvnhgcACDR/TempSuite1348784608182402617.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite1348784608182402617.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite1348784608182402617.adam/._samples.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite1348784608182402617.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite1348784608182402617.adam/._header.crc
/tmp/adamTestMvnhgcACDR/TempSuite1348784608182402617.adam/_header
/tmp/adamTestMvnhgcACDR/TempSuite8232919176208803799
/tmp/adamTestMvnhgcACDR/TempSuite9120051673154582862.adam
/tmp/adamTestMvnhgcACDR/TempSuite9120051673154582862.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite9120051673154582862.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite9120051673154582862.adam/.part-00000-c58a6926-887c-4d0f-a4b8-86d03f37442a-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite9120051673154582862.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite9120051673154582862.adam/_samples.avro
/tmp/adamTestMvnhgcACDR/TempSuite9120051673154582862.adam/part-00001-c58a6926-887c-4d0f-a4b8-86d03f37442a-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite9120051673154582862.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite9120051673154582862.adam/._samples.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite9120051673154582862.adam/._header.crc
/tmp/adamTestMvnhgcACDR/TempSuite9120051673154582862.adam/.part-00002-c58a6926-887c-4d0f-a4b8-86d03f37442a-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite9120051673154582862.adam/_header
/tmp/adamTestMvnhgcACDR/TempSuite9120051673154582862.adam/part-00000-c58a6926-887c-4d0f-a4b8-86d03f37442a-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite9120051673154582862.adam/part-00002-c58a6926-887c-4d0f-a4b8-86d03f37442a-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite9120051673154582862.adam/.part-00001-c58a6926-887c-4d0f-a4b8-86d03f37442a-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite3173493152736294589.adam
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite3173493152736294589.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite3173493152736294589.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite3173493152736294589.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite3173493152736294589.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite3173493152736294589.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite3173493152736294589.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite3173493152736294589.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite3173493152736294589.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite3173493152736294589.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite3173493152736294589.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite3173493152736294589.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite3173493152736294589.adam/_references.avro
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite3173493152736294589.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite3173493152736294589.adam/_metadata
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite3173493152736294589.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite3173493152736294589.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite3985550610983559529.adam
/tmp/adamTestMvnhgcACDR/TempSuite3985550610983559529.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite3985550610983559529.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite3985550610983559529.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite3985550610983559529.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite3985550610983559529.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite3985550610983559529.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite3985550610983559529.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite3985550610983559529.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite3985550610983559529.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite3985550610983559529.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite3985550610983559529.adam/._header.crc
/tmp/adamTestMvnhgcACDR/TempSuite3985550610983559529.adam/_header
/tmp/adamTestMvnhgcACDR/TempSuite1486778531698499130
/tmp/adamTestMvnhgcACDR/trinity.fa5605540163364628241.fa
/tmp/adamTestMvnhgcACDR/TempSuite398815801551784536
/tmp/adamTestMvnhgcACDR/TempSuite7544710992475379201
/tmp/adamTestMvnhgcACDR/javaAC2819635171390610038
/tmp/adamTestMvnhgcACDR/javaAC2819635171390610038/testRdd.slices.adam
/tmp/adamTestMvnhgcACDR/javaAC2819635171390610038/testRdd.slices.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/javaAC2819635171390610038/testRdd.slices.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/javaAC2819635171390610038/testRdd.slices.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/javaAC2819635171390610038/testRdd.slices.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/javaAC2819635171390610038/testRdd.slices.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/javaAC2819635171390610038/testRdd.slices.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/javaAC2819635171390610038/testRdd.slices.adam/_references.avro
/tmp/adamTestMvnhgcACDR/javaAC2819635171390610038/testRdd.slices.adam/_metadata
/tmp/adamTestMvnhgcACDR/javaAC2819635171390610038/testRdd.slices.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/javaAC2819635171390610038/testRdd.slices.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/2374039688288607040
/tmp/adamTestMvnhgcACDR/2374039688288607040/.out.bam_head.crc
/tmp/adamTestMvnhgcACDR/2374039688288607040/.out.bam.crc
/tmp/adamTestMvnhgcACDR/2374039688288607040/out.bam_tail
/tmp/adamTestMvnhgcACDR/2374039688288607040/out.bam_tail/.part-r-00003.bam.crc
/tmp/adamTestMvnhgcACDR/2374039688288607040/out.bam_tail/.part-r-00002.bam.crc
/tmp/adamTestMvnhgcACDR/2374039688288607040/out.bam_tail/part-r-00002.bam
/tmp/adamTestMvnhgcACDR/2374039688288607040/out.bam_tail/_SUCCESS
/tmp/adamTestMvnhgcACDR/2374039688288607040/out.bam_tail/.part-r-00001.bam.crc
/tmp/adamTestMvnhgcACDR/2374039688288607040/out.bam_tail/part-r-00003.bam
/tmp/adamTestMvnhgcACDR/2374039688288607040/out.bam_tail/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/2374039688288607040/out.bam_tail/.part-r-00000.bam.crc
/tmp/adamTestMvnhgcACDR/2374039688288607040/out.bam_tail/part-r-00000.bam
/tmp/adamTestMvnhgcACDR/2374039688288607040/out.bam_tail/part-r-00001.bam
/tmp/adamTestMvnhgcACDR/2374039688288607040/out.bam
/tmp/adamTestMvnhgcACDR/2374039688288607040/out.bam_head
/tmp/adamTestMvnhgcACDR/TempSuite4222301087395007808
/tmp/adamTestMvnhgcACDR/TempSuite1405574496366726299.adam
/tmp/adamTestMvnhgcACDR/TempSuite1405574496366726299.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite1405574496366726299.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite1405574496366726299.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite1405574496366726299.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite1405574496366726299.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite1405574496366726299.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite1405574496366726299.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite1405574496366726299.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite1405574496366726299.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite1405574496366726299.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite1405574496366726299.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite1405574496366726299.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite1405574496366726299.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite1405574496366726299.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite1405574496366726299.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite1405574496366726299.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite1405574496366726299.adam/._header.crc
/tmp/adamTestMvnhgcACDR/TempSuite1405574496366726299.adam/_header
/tmp/adamTestMvnhgcACDR/.FeatureDatasetFunctionsSuite3120749399138817176.gtf.crc
/tmp/adamTestMvnhgcACDR/TempSuite5358476212778820415.adam
/tmp/adamTestMvnhgcACDR/TempSuite5358476212778820415.adam/.part-00000-9cb3c140-c545-4008-b54b-795b8a9796d2-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite5358476212778820415.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite5358476212778820415.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite5358476212778820415.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite5358476212778820415.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite5358476212778820415.adam/._header.crc
/tmp/adamTestMvnhgcACDR/TempSuite5358476212778820415.adam/_header
/tmp/adamTestMvnhgcACDR/TempSuite5358476212778820415.adam/part-00000-9cb3c140-c545-4008-b54b-795b8a9796d2-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite6423294933447008385.gff3
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite6423294933447008385.gff3/.part-00003.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite6423294933447008385.gff3/.part-00000.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite6423294933447008385.gff3/_SUCCESS
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite6423294933447008385.gff3/part-00003
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite6423294933447008385.gff3/part-00000
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite6423294933447008385.gff3/part-00002
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite6423294933447008385.gff3/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite6423294933447008385.gff3/.part-00002.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite6423294933447008385.gff3/part-00001
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite6423294933447008385.gff3/.part-00001.crc
/tmp/adamTestMvnhgcACDR/TempSuite7165265085415023662.adam
/tmp/adamTestMvnhgcACDR/TempSuite7165265085415023662.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite7165265085415023662.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite7165265085415023662.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite7165265085415023662.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/TempSuite7165265085415023662.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite7165265085415023662.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/TempSuite7165265085415023662.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite7165265085415023662.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite7165265085415023662.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite7165265085415023662.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite7165265085415023662.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite7165265085415023662.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite7165265085415023662.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite7165265085415023662.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite6885583404496750938.bed
/tmp/adamTestMvnhgcACDR/TempSuite6885583404496750938.bed/.part-00003.crc
/tmp/adamTestMvnhgcACDR/TempSuite6885583404496750938.bed/.part-00000.crc
/tmp/adamTestMvnhgcACDR/TempSuite6885583404496750938.bed/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite6885583404496750938.bed/part-00003
/tmp/adamTestMvnhgcACDR/TempSuite6885583404496750938.bed/part-00000
/tmp/adamTestMvnhgcACDR/TempSuite6885583404496750938.bed/part-00002
/tmp/adamTestMvnhgcACDR/TempSuite6885583404496750938.bed/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite6885583404496750938.bed/.part-00002.crc
/tmp/adamTestMvnhgcACDR/TempSuite6885583404496750938.bed/part-00001
/tmp/adamTestMvnhgcACDR/TempSuite6885583404496750938.bed/.part-00001.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3011594730700090729
/tmp/adamTestMvnhgcACDR/small.sam8880767531800621775.sam
/tmp/adamTestMvnhgcACDR/TempSuite6283265412052046590
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite5486887234343250604.bed
/tmp/adamTestMvnhgcACDR/small.vcf2483504392391357898.vcf
/tmp/adamTestMvnhgcACDR/artificial.cram3194629200773239233.cram
/tmp/adamTestMvnhgcACDR/573810676952315389
/tmp/adamTestMvnhgcACDR/573810676952315389/unordered.adam
/tmp/adamTestMvnhgcACDR/573810676952315389/unordered.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/573810676952315389/unordered.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/573810676952315389/unordered.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/573810676952315389/unordered.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/573810676952315389/unordered.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/573810676952315389/unordered.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/573810676952315389/unordered.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/573810676952315389/unordered.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/573810676952315389/unordered.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/573810676952315389/unordered.adam/_references.avro
/tmp/adamTestMvnhgcACDR/573810676952315389/unordered.adam/_metadata
/tmp/adamTestMvnhgcACDR/573810676952315389/unordered.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/573810676952315389/unordered.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/573810676952315389/unordered.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4323198831958602096
/tmp/adamTestMvnhgcACDR/TempSuite9103683648736879934.adam
/tmp/adamTestMvnhgcACDR/TempSuite9103683648736879934.adam/part-00000-4f19df96-6989-4082-bd95-b2c32594f923-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite9103683648736879934.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite9103683648736879934.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite9103683648736879934.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite9103683648736879934.adam/_samples.avro
/tmp/adamTestMvnhgcACDR/TempSuite9103683648736879934.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite9103683648736879934.adam/._samples.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite9103683648736879934.adam/._header.crc
/tmp/adamTestMvnhgcACDR/TempSuite9103683648736879934.adam/_header
/tmp/adamTestMvnhgcACDR/TempSuite9103683648736879934.adam/.part-00000-4f19df96-6989-4082-bd95-b2c32594f923-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite1359001996551727918.adam
/tmp/adamTestMvnhgcACDR/TempSuite1359001996551727918.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite1359001996551727918.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite1359001996551727918.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite1359001996551727918.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite1359001996551727918.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite1359001996551727918.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/TempSuite1359001996551727918.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite1359001996551727918.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/TempSuite1359001996551727918.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite1359001996551727918.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite1359001996551727918.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite1359001996551727918.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite1359001996551727918.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite1359001996551727918.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite1359001996551727918.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite1359001996551727918.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite1359001996551727918.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite1359001996551727918.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite1359001996551727918.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite1359001996551727918.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/random.vcf8926701724820768720.vcf
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite3131359299200699307.adam
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite3131359299200699307.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite3131359299200699307.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite3131359299200699307.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite3131359299200699307.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite3131359299200699307.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite3131359299200699307.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite3131359299200699307.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite3131359299200699307.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite3131359299200699307.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite3131359299200699307.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite3131359299200699307.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite3131359299200699307.adam/_references.avro
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite3131359299200699307.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite3131359299200699307.adam/_metadata
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite3131359299200699307.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite3131359299200699307.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite1591167534300004552.adam
/tmp/adamTestMvnhgcACDR/TempSuite1591167534300004552.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite1591167534300004552.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite1591167534300004552.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite1591167534300004552.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite1591167534300004552.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite1591167534300004552.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite1591167534300004552.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite1591167534300004552.adam/_samples.avro
/tmp/adamTestMvnhgcACDR/TempSuite1591167534300004552.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite1591167534300004552.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite1591167534300004552.adam/._samples.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite1591167534300004552.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite8848201261213322780
/tmp/adamTestMvnhgcACDR/TempSuite6283265412052046590.adam
/tmp/adamTestMvnhgcACDR/TempSuite6283265412052046590.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite6283265412052046590.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite6283265412052046590.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite6283265412052046590.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/TempSuite6283265412052046590.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite6283265412052046590.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/TempSuite6283265412052046590.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite6283265412052046590.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite6283265412052046590.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite6283265412052046590.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite6283265412052046590.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite6283265412052046590.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite6283265412052046590.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite6283265412052046590.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite8844592147852427075
/tmp/adamTestMvnhgcACDR/TempSuite6198436319431262327
/tmp/adamTestMvnhgcACDR/TempSuite5701187947227424387
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite3006307524687798927.adam
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite3006307524687798927.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite3006307524687798927.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite3006307524687798927.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite3006307524687798927.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite3006307524687798927.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite3006307524687798927.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite3006307524687798927.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite3006307524687798927.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite3006307524687798927.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite3006307524687798927.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite3006307524687798927.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite3006307524687798927.adam/_references.avro
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite3006307524687798927.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite3006307524687798927.adam/_metadata
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite3006307524687798927.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite3006307524687798927.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite7034785675176381007.fasta
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite7724596121523627268.gff3
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite7724596121523627268.gff3/.part-00003.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite7724596121523627268.gff3/.part-00000.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite7724596121523627268.gff3/_SUCCESS
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite7724596121523627268.gff3/part-00003
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite7724596121523627268.gff3/part-00000
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite7724596121523627268.gff3/part-00002
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite7724596121523627268.gff3/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite7724596121523627268.gff3/.part-00002.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite7724596121523627268.gff3/part-00001
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite7724596121523627268.gff3/.part-00001.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite2364946359087766560
/tmp/adamTestMvnhgcACDR/TempSuite4567202946766238345.bed
/tmp/adamTestMvnhgcACDR/TempSuite4567202946766238345.bed/.part-00000.crc
/tmp/adamTestMvnhgcACDR/TempSuite4567202946766238345.bed/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite4567202946766238345.bed/part-00000
/tmp/adamTestMvnhgcACDR/TempSuite4567202946766238345.bed/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite4417725976425954732.adam
/tmp/adamTestMvnhgcACDR/TempSuite4417725976425954732.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite4417725976425954732.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite4417725976425954732.adam/_partitionedByStartPos
/tmp/adamTestMvnhgcACDR/TempSuite4417725976425954732.adam/referenceName=13
/tmp/adamTestMvnhgcACDR/TempSuite4417725976425954732.adam/referenceName=13/positionBin=0
/tmp/adamTestMvnhgcACDR/TempSuite4417725976425954732.adam/referenceName=13/positionBin=0/part-00000-af3ae5be-152e-4af2-ad9d-4de770c0caeb.c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite4417725976425954732.adam/referenceName=13/positionBin=0/.part-00000-af3ae5be-152e-4af2-ad9d-4de770c0caeb.c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite4417725976425954732.adam/referenceName=1
/tmp/adamTestMvnhgcACDR/TempSuite4417725976425954732.adam/referenceName=1/positionBin=0
/tmp/adamTestMvnhgcACDR/TempSuite4417725976425954732.adam/referenceName=1/positionBin=0/part-00000-af3ae5be-152e-4af2-ad9d-4de770c0caeb.c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite4417725976425954732.adam/referenceName=1/positionBin=0/.part-00000-af3ae5be-152e-4af2-ad9d-4de770c0caeb.c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite4417725976425954732.adam/._partitionedByStartPos.crc
/tmp/adamTestMvnhgcACDR/TempSuite4417725976425954732.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite4417725976425954732.adam/referenceName=2
/tmp/adamTestMvnhgcACDR/TempSuite4417725976425954732.adam/referenceName=2/positionBin=0
/tmp/adamTestMvnhgcACDR/TempSuite4417725976425954732.adam/referenceName=2/positionBin=0/part-00000-af3ae5be-152e-4af2-ad9d-4de770c0caeb.c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite4417725976425954732.adam/referenceName=2/positionBin=0/.part-00000-af3ae5be-152e-4af2-ad9d-4de770c0caeb.c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite4417725976425954732.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite4417725976425954732.adam/._header.crc
/tmp/adamTestMvnhgcACDR/TempSuite4417725976425954732.adam/_header
/tmp/adamTestMvnhgcACDR/ordered.sam8498335731614928454.sam
/tmp/adamTestMvnhgcACDR/javaAC6197263114507108185
/tmp/adamTestMvnhgcACDR/javaAC6197263114507108185/testRdd.fragment.adam
/tmp/adamTestMvnhgcACDR/javaAC6197263114507108185/testRdd.fragment.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/javaAC6197263114507108185/testRdd.fragment.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/javaAC6197263114507108185/testRdd.fragment.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/javaAC6197263114507108185/testRdd.fragment.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/javaAC6197263114507108185/testRdd.fragment.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/javaAC6197263114507108185/testRdd.fragment.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/javaAC6197263114507108185/testRdd.fragment.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/javaAC6197263114507108185/testRdd.fragment.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/javaAC6197263114507108185/testRdd.fragment.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/javaAC6197263114507108185/testRdd.fragment.adam/_references.avro
/tmp/adamTestMvnhgcACDR/javaAC6197263114507108185/testRdd.fragment.adam/_metadata
/tmp/adamTestMvnhgcACDR/javaAC6197263114507108185/testRdd.fragment.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/javaAC6197263114507108185/testRdd.fragment.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/javaAC6197263114507108185/testRdd.fragment.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite2955580501616427407
/tmp/adamTestMvnhgcACDR/.TempSuite3456590508839411252_2.fq.crc
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite3374512864520948187
/tmp/adamTestMvnhgcACDR/TempSuite7182425202216468876.adam
/tmp/adamTestMvnhgcACDR/TempSuite7182425202216468876.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite7182425202216468876.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite7182425202216468876.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite7182425202216468876.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/TempSuite7182425202216468876.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite7182425202216468876.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/TempSuite7182425202216468876.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite7182425202216468876.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite7182425202216468876.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite7182425202216468876.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite7182425202216468876.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite7182425202216468876.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite7182425202216468876.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite7182425202216468876.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite732764160450393098.gtf
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite732764160450393098.gtf/.part-00003.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite732764160450393098.gtf/.part-00000.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite732764160450393098.gtf/_SUCCESS
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite732764160450393098.gtf/part-00003
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite732764160450393098.gtf/part-00000
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite732764160450393098.gtf/part-00002
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite732764160450393098.gtf/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite732764160450393098.gtf/.part-00002.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite732764160450393098.gtf/part-00001
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite732764160450393098.gtf/.part-00001.crc
/tmp/adamTestMvnhgcACDR/TempSuite4611031656958292126.adam
/tmp/adamTestMvnhgcACDR/TempSuite4611031656958292126.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite4611031656958292126.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite4611031656958292126.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite4611031656958292126.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/TempSuite4611031656958292126.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite4611031656958292126.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/TempSuite4611031656958292126.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite4611031656958292126.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite4611031656958292126.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite4611031656958292126.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite4611031656958292126.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite4611031656958292126.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite4611031656958292126.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite4611031656958292126.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite1186377572014782874
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4873084569238192489
/tmp/adamTestMvnhgcACDR/TempSuite6357664299618613691.adam
/tmp/adamTestMvnhgcACDR/TempSuite6357664299618613691.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite6357664299618613691.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite6357664299618613691.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite6357664299618613691.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite6357664299618613691.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite6357664299618613691.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite6357664299618613691.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite6357664299618613691.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite6357664299618613691.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite6357664299618613691.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite3456590508839411252
/tmp/adamTestMvnhgcACDR/TempSuite6193442401987748576
/tmp/adamTestMvnhgcACDR/TempSuite8587772260969487216
/tmp/adamTestMvnhgcACDR/TempSuite4178285618202487392
/tmp/adamTestMvnhgcACDR/TempSuite2223053413827575967.adam
/tmp/adamTestMvnhgcACDR/TempSuite2223053413827575967.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite2223053413827575967.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite2223053413827575967.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite2223053413827575967.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/TempSuite2223053413827575967.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite2223053413827575967.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/TempSuite2223053413827575967.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite2223053413827575967.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite2223053413827575967.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite2223053413827575967.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite2223053413827575967.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite2223053413827575967.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite2223053413827575967.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite2223053413827575967.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3926509868566513595.narrowPeak
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3926509868566513595.narrowPeak/.part-00003.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3926509868566513595.narrowPeak/.part-00000.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3926509868566513595.narrowPeak/_SUCCESS
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3926509868566513595.narrowPeak/part-00003
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3926509868566513595.narrowPeak/part-00000
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3926509868566513595.narrowPeak/part-00002
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3926509868566513595.narrowPeak/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3926509868566513595.narrowPeak/.part-00002.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3926509868566513595.narrowPeak/part-00001
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3926509868566513595.narrowPeak/.part-00001.crc
/tmp/adamTestMvnhgcACDR/TempSuite8200628952393097148
/tmp/adamTestMvnhgcACDR/TempSuite2969717607325796893.sam
/tmp/adamTestMvnhgcACDR/TempSuite2969717607325796893.sam/part-r-00000.sam
/tmp/adamTestMvnhgcACDR/TempSuite2969717607325796893.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnhgcACDR/TempSuite2969717607325796893.sam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite2969717607325796893.sam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/ordered.sam8868130965678229532.sam
/tmp/adamTestMvnhgcACDR/javaAC4002417606526849074
/tmp/adamTestMvnhgcACDR/javaAC4002417606526849074/testRdd.variant.adam
/tmp/adamTestMvnhgcACDR/javaAC4002417606526849074/testRdd.variant.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/javaAC4002417606526849074/testRdd.variant.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/javaAC4002417606526849074/testRdd.variant.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/javaAC4002417606526849074/testRdd.variant.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/javaAC4002417606526849074/testRdd.variant.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/javaAC4002417606526849074/testRdd.variant.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/javaAC4002417606526849074/testRdd.variant.adam/_references.avro
/tmp/adamTestMvnhgcACDR/javaAC4002417606526849074/testRdd.variant.adam/_metadata
/tmp/adamTestMvnhgcACDR/javaAC4002417606526849074/testRdd.variant.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/javaAC4002417606526849074/testRdd.variant.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/javaAC4002417606526849074/testRdd.variant.adam/._header.crc
/tmp/adamTestMvnhgcACDR/javaAC4002417606526849074/testRdd.variant.adam/_header
/tmp/adamTestMvnhgcACDR/unordered.sam8559683683066770836.sam
/tmp/adamTestMvnhgcACDR/TempSuite7147572440405863080
/tmp/adamTestMvnhgcACDR/3392360668345242860
/tmp/adamTestMvnhgcACDR/3392360668345242860/predicate.1.adam
/tmp/adamTestMvnhgcACDR/3392360668345242860/predicate.1.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/3392360668345242860/predicate.1.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/3392360668345242860/predicate.1.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/3392360668345242860/predicate.1.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/3392360668345242860/predicate.1.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/3392360668345242860/predicate.1.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/3392360668345242860/predicate.1.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/3392360668345242860/predicate.1.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/3392360668345242860/predicate.1.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/3392360668345242860/predicate.1.adam/_references.avro
/tmp/adamTestMvnhgcACDR/3392360668345242860/predicate.1.adam/_metadata
/tmp/adamTestMvnhgcACDR/3392360668345242860/predicate.1.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/3392360668345242860/predicate.1.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/3392360668345242860/predicate.1.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/.FeatureDatasetFunctionsSuite8784572612607133158.gtf.crc
/tmp/adamTestMvnhgcACDR/7156212536993945985
/tmp/adamTestMvnhgcACDR/7156212536993945985/genotypes.adam
/tmp/adamTestMvnhgcACDR/7156212536993945985/genotypes.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/7156212536993945985/genotypes.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/7156212536993945985/genotypes.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/7156212536993945985/genotypes.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/7156212536993945985/genotypes.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/7156212536993945985/genotypes.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/7156212536993945985/genotypes.adam/_references.avro
/tmp/adamTestMvnhgcACDR/7156212536993945985/genotypes.adam/_samples.avro
/tmp/adamTestMvnhgcACDR/7156212536993945985/genotypes.adam/_metadata
/tmp/adamTestMvnhgcACDR/7156212536993945985/genotypes.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/7156212536993945985/genotypes.adam/._samples.avro.crc
/tmp/adamTestMvnhgcACDR/7156212536993945985/genotypes.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/7156212536993945985/genotypes.adam/._header.crc
/tmp/adamTestMvnhgcACDR/7156212536993945985/genotypes.adam/_header
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite8131583303131714253
/tmp/adamTestMvnhgcACDR/TempSuite1904849594342219120.bed
/tmp/adamTestMvnhgcACDR/TempSuite1904849594342219120.bed/.part-00003.crc
/tmp/adamTestMvnhgcACDR/TempSuite1904849594342219120.bed/.part-00000.crc
/tmp/adamTestMvnhgcACDR/TempSuite1904849594342219120.bed/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite1904849594342219120.bed/part-00003
/tmp/adamTestMvnhgcACDR/TempSuite1904849594342219120.bed/part-00000
/tmp/adamTestMvnhgcACDR/TempSuite1904849594342219120.bed/part-00002
/tmp/adamTestMvnhgcACDR/TempSuite1904849594342219120.bed/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite1904849594342219120.bed/.part-00002.crc
/tmp/adamTestMvnhgcACDR/TempSuite1904849594342219120.bed/part-00001
/tmp/adamTestMvnhgcACDR/TempSuite1904849594342219120.bed/.part-00001.crc
/tmp/adamTestMvnhgcACDR/TempSuite1269763983670024252
/tmp/adamTestMvnhgcACDR/1575236531088-0
/tmp/adamTestMvnhgcACDR/1575236531088-0/bqsr1-r2.fq
/tmp/adamTestMvnhgcACDR/1575236531088-0/bqsr1-r2.fq/.part-00000.crc
/tmp/adamTestMvnhgcACDR/1575236531088-0/bqsr1-r2.fq/_SUCCESS
/tmp/adamTestMvnhgcACDR/1575236531088-0/bqsr1-r2.fq/part-00000
/tmp/adamTestMvnhgcACDR/1575236531088-0/bqsr1-r2.fq/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/1575236531088-0/bqsr1-r1.fq
/tmp/adamTestMvnhgcACDR/1575236531088-0/bqsr1-r1.fq/.part-00000.crc
/tmp/adamTestMvnhgcACDR/1575236531088-0/bqsr1-r1.fq/_SUCCESS
/tmp/adamTestMvnhgcACDR/1575236531088-0/bqsr1-r1.fq/part-00000
/tmp/adamTestMvnhgcACDR/1575236531088-0/bqsr1-r1.fq/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite7067168731893543579
/tmp/adamTestMvnhgcACDR/TempSuite7153843475482247894
/tmp/adamTestMvnhgcACDR/javaAC4145697195301077802
/tmp/adamTestMvnhgcACDR/javaAC4145697195301077802/testRdd.genotype.adam
/tmp/adamTestMvnhgcACDR/javaAC4145697195301077802/testRdd.genotype.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/javaAC4145697195301077802/testRdd.genotype.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/javaAC4145697195301077802/testRdd.genotype.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/javaAC4145697195301077802/testRdd.genotype.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/javaAC4145697195301077802/testRdd.genotype.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/javaAC4145697195301077802/testRdd.genotype.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/javaAC4145697195301077802/testRdd.genotype.adam/_references.avro
/tmp/adamTestMvnhgcACDR/javaAC4145697195301077802/testRdd.genotype.adam/_samples.avro
/tmp/adamTestMvnhgcACDR/javaAC4145697195301077802/testRdd.genotype.adam/_metadata
/tmp/adamTestMvnhgcACDR/javaAC4145697195301077802/testRdd.genotype.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/javaAC4145697195301077802/testRdd.genotype.adam/._samples.avro.crc
/tmp/adamTestMvnhgcACDR/javaAC4145697195301077802/testRdd.genotype.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/javaAC4145697195301077802/testRdd.genotype.adam/._header.crc
/tmp/adamTestMvnhgcACDR/javaAC4145697195301077802/testRdd.genotype.adam/_header
/tmp/adamTestMvnhgcACDR/.TempSuite2748069759611674384_2.fq.crc
/tmp/adamTestMvnhgcACDR/TempSuite5601637577939345464.adam
/tmp/adamTestMvnhgcACDR/TempSuite5601637577939345464.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite5601637577939345464.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite5601637577939345464.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite5601637577939345464.adam/part-00000-0ff6a1d5-0224-4fb8-8fd9-4c88f8ae945c-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite5601637577939345464.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite5601637577939345464.adam/._header.crc
/tmp/adamTestMvnhgcACDR/TempSuite5601637577939345464.adam/_header
/tmp/adamTestMvnhgcACDR/TempSuite5601637577939345464.adam/.part-00000-0ff6a1d5-0224-4fb8-8fd9-4c88f8ae945c-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite4755509820225742097.adam
/tmp/adamTestMvnhgcACDR/TempSuite4755509820225742097.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite4755509820225742097.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite4755509820225742097.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite4755509820225742097.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/TempSuite4755509820225742097.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite4755509820225742097.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/TempSuite4755509820225742097.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite4755509820225742097.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite4755509820225742097.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite4755509820225742097.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite4755509820225742097.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite4755509820225742097.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite4755509820225742097.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite4755509820225742097.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite5625420552263019120
/tmp/adamTestMvnhgcACDR/TempSuite3473393859742099474
/tmp/adamTestMvnhgcACDR/TempSuite3555717120533896886reads12.sam_2
/tmp/adamTestMvnhgcACDR/TempSuite5625420552263019120.adam
/tmp/adamTestMvnhgcACDR/TempSuite5625420552263019120.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite5625420552263019120.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite5625420552263019120.adam/part-00000-39512436-daee-4ced-9a6b-31f51ae8ac32-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite5625420552263019120.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite5625420552263019120.adam/_samples.avro
/tmp/adamTestMvnhgcACDR/TempSuite5625420552263019120.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite5625420552263019120.adam/._samples.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite5625420552263019120.adam/._header.crc
/tmp/adamTestMvnhgcACDR/TempSuite5625420552263019120.adam/_header
/tmp/adamTestMvnhgcACDR/TempSuite5625420552263019120.adam/.part-00000-39512436-daee-4ced-9a6b-31f51ae8ac32-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/ordered.sam4854703537827433666.sam
/tmp/adamTestMvnhgcACDR/2906998874531224949
/tmp/adamTestMvnhgcACDR/2906998874531224949/variants.adam
/tmp/adamTestMvnhgcACDR/2906998874531224949/variants.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/2906998874531224949/variants.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/2906998874531224949/variants.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/2906998874531224949/variants.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/2906998874531224949/variants.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/2906998874531224949/variants.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/2906998874531224949/variants.adam/_references.avro
/tmp/adamTestMvnhgcACDR/2906998874531224949/variants.adam/_metadata
/tmp/adamTestMvnhgcACDR/2906998874531224949/variants.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/2906998874531224949/variants.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/2906998874531224949/variants.adam/._header.crc
/tmp/adamTestMvnhgcACDR/2906998874531224949/variants.adam/_header
/tmp/adamTestMvnhgcACDR/TempSuite2748069759611674384_2.fq
/tmp/adamTestMvnhgcACDR/TempSuite5749972046249441946
/tmp/adamTestMvnhgcACDR/TempSuite8243339695291258598.bed
/tmp/adamTestMvnhgcACDR/TempSuite8243339695291258598.bed/.part-00000.crc
/tmp/adamTestMvnhgcACDR/TempSuite8243339695291258598.bed/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite8243339695291258598.bed/part-00000
/tmp/adamTestMvnhgcACDR/TempSuite8243339695291258598.bed/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/.TempSuite6594996293425111992.sam.crc
/tmp/adamTestMvnhgcACDR/TempSuite5586833837089755598
/tmp/adamTestMvnhgcACDR/TempSuite8770636679570181992.adam
/tmp/adamTestMvnhgcACDR/TempSuite8770636679570181992.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite8770636679570181992.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite8770636679570181992.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite8770636679570181992.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/TempSuite8770636679570181992.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite8770636679570181992.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/TempSuite8770636679570181992.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite8770636679570181992.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite8770636679570181992.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite8770636679570181992.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite8770636679570181992.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite8770636679570181992.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite8770636679570181992.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite8770636679570181992.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite1024641686641544015
/tmp/adamTestMvnhgcACDR/TempSuite5721172186608432672
/tmp/adamTestMvnhgcACDR/TempSuite2737121622107875198.adam
/tmp/adamTestMvnhgcACDR/TempSuite2737121622107875198.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite2737121622107875198.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite2737121622107875198.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite2737121622107875198.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite2737121622107875198.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite2737121622107875198.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite2737121622107875198.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite2737121622107875198.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite2737121622107875198.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite2737121622107875198.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite2737121622107875198.adam/._header.crc
/tmp/adamTestMvnhgcACDR/TempSuite2737121622107875198.adam/_header
/tmp/adamTestMvnhgcACDR/random.vcf9203916771892482751.vcf
/tmp/adamTestMvnhgcACDR/TempSuite4333979329693185338.adam
/tmp/adamTestMvnhgcACDR/TempSuite4333979329693185338.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite4333979329693185338.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite4333979329693185338.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite4333979329693185338.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite4333979329693185338.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite4333979329693185338.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite4333979329693185338.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite4333979329693185338.adam/_samples.avro
/tmp/adamTestMvnhgcACDR/TempSuite4333979329693185338.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite4333979329693185338.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite4333979329693185338.adam/._samples.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite4333979329693185338.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite4333979329693185338.adam/._header.crc
/tmp/adamTestMvnhgcACDR/TempSuite4333979329693185338.adam/_header
/tmp/adamTestMvnhgcACDR/1740202055377890399
/tmp/adamTestMvnhgcACDR/1740202055377890399/.sorted.lex.vcf.crc
/tmp/adamTestMvnhgcACDR/1740202055377890399/sorted.lex.vcf
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite789916828206143469
/tmp/adamTestMvnhgcACDR/TempSuite1542057153503884690
/tmp/adamTestMvnhgcACDR/TempSuite6594176872473818486
/tmp/adamTestMvnhgcACDR/TempSuite452221969025311601.bed
/tmp/adamTestMvnhgcACDR/TempSuite452221969025311601.bed/.part-00003.crc
/tmp/adamTestMvnhgcACDR/TempSuite452221969025311601.bed/.part-00000.crc
/tmp/adamTestMvnhgcACDR/TempSuite452221969025311601.bed/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite452221969025311601.bed/part-00003
/tmp/adamTestMvnhgcACDR/TempSuite452221969025311601.bed/part-00000
/tmp/adamTestMvnhgcACDR/TempSuite452221969025311601.bed/part-00002
/tmp/adamTestMvnhgcACDR/TempSuite452221969025311601.bed/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite452221969025311601.bed/.part-00002.crc
/tmp/adamTestMvnhgcACDR/TempSuite452221969025311601.bed/part-00001
/tmp/adamTestMvnhgcACDR/TempSuite452221969025311601.bed/.part-00001.crc
/tmp/adamTestMvnhgcACDR/5141590071290651810
/tmp/adamTestMvnhgcACDR/5141590071290651810/sorted.vcf
/tmp/adamTestMvnhgcACDR/5141590071290651810/.sorted.vcf.crc
/tmp/adamTestMvnhgcACDR/1575236489852-0
/tmp/adamTestMvnhgcACDR/1575236489852-0/bqsr1-r2.fq
/tmp/adamTestMvnhgcACDR/1575236489852-0/bqsr1-r2.fq/.part-00000.crc
/tmp/adamTestMvnhgcACDR/1575236489852-0/bqsr1-r2.fq/_SUCCESS
/tmp/adamTestMvnhgcACDR/1575236489852-0/bqsr1-r2.fq/part-00000
/tmp/adamTestMvnhgcACDR/1575236489852-0/bqsr1-r2.fq/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/1575236489852-0/bqsr1-r1.fq
/tmp/adamTestMvnhgcACDR/1575236489852-0/bqsr1-r1.fq/.part-00000.crc
/tmp/adamTestMvnhgcACDR/1575236489852-0/bqsr1-r1.fq/_SUCCESS
/tmp/adamTestMvnhgcACDR/1575236489852-0/bqsr1-r1.fq/part-00000
/tmp/adamTestMvnhgcACDR/1575236489852-0/bqsr1-r1.fq/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/sorted.sam5670563594334667065.sam
/tmp/adamTestMvnhgcACDR/TempSuite4385750674308703114.adam
/tmp/adamTestMvnhgcACDR/TempSuite4385750674308703114.adam/.part-00000-2d4f2b70-586e-452a-b7c6-8d0138930af5-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite4385750674308703114.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite4385750674308703114.adam/part-00000-2d4f2b70-586e-452a-b7c6-8d0138930af5-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite4385750674308703114.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite4385750674308703114.adam/.part-00001-2d4f2b70-586e-452a-b7c6-8d0138930af5-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite4385750674308703114.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite4385750674308703114.adam/_samples.avro
/tmp/adamTestMvnhgcACDR/TempSuite4385750674308703114.adam/part-00001-2d4f2b70-586e-452a-b7c6-8d0138930af5-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite4385750674308703114.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite4385750674308703114.adam/._samples.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite4385750674308703114.adam/part-00002-2d4f2b70-586e-452a-b7c6-8d0138930af5-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite4385750674308703114.adam/.part-00002-2d4f2b70-586e-452a-b7c6-8d0138930af5-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite5227846080027970928
/tmp/adamTestMvnhgcACDR/TempSuite235678117327212792
/tmp/adamTestMvnhgcACDR/TempSuite6951593671436228493.adam
/tmp/adamTestMvnhgcACDR/TempSuite6951593671436228493.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite6951593671436228493.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite6951593671436228493.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite6951593671436228493.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite6951593671436228493.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite6951593671436228493.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite6951593671436228493.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite6951593671436228493.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite6951593671436228493.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite6951593671436228493.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite6951593671436228493.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite6951593671436228493.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite6951593671436228493.adam/_samples.avro
/tmp/adamTestMvnhgcACDR/TempSuite6951593671436228493.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite6951593671436228493.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite6951593671436228493.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite6951593671436228493.adam/._samples.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite6951593671436228493.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/7174237398456739751
/tmp/adamTestMvnhgcACDR/7174237398456739751/.out.bam_head.crc
/tmp/adamTestMvnhgcACDR/7174237398456739751/.out.bam.crc
/tmp/adamTestMvnhgcACDR/7174237398456739751/out.bam_tail
/tmp/adamTestMvnhgcACDR/7174237398456739751/out.bam_tail/.part-r-00003.bam.crc
/tmp/adamTestMvnhgcACDR/7174237398456739751/out.bam_tail/.part-r-00002.bam.crc
/tmp/adamTestMvnhgcACDR/7174237398456739751/out.bam_tail/part-r-00002.bam
/tmp/adamTestMvnhgcACDR/7174237398456739751/out.bam_tail/_SUCCESS
/tmp/adamTestMvnhgcACDR/7174237398456739751/out.bam_tail/.part-r-00001.bam.crc
/tmp/adamTestMvnhgcACDR/7174237398456739751/out.bam_tail/part-r-00003.bam
/tmp/adamTestMvnhgcACDR/7174237398456739751/out.bam_tail/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/7174237398456739751/out.bam_tail/.part-r-00000.bam.crc
/tmp/adamTestMvnhgcACDR/7174237398456739751/out.bam_tail/part-r-00000.bam
/tmp/adamTestMvnhgcACDR/7174237398456739751/out.bam_tail/part-r-00001.bam
/tmp/adamTestMvnhgcACDR/7174237398456739751/out.bam
/tmp/adamTestMvnhgcACDR/7174237398456739751/out.bam_head
/tmp/adamTestMvnhgcACDR/TempSuite3693535138654854301.bam
/tmp/adamTestMvnhgcACDR/TempSuite3693535138654854301.bam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite3693535138654854301.bam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite3693535138654854301.bam/.part-r-00000.bam.crc
/tmp/adamTestMvnhgcACDR/TempSuite3693535138654854301.bam/part-r-00000.bam
/tmp/adamTestMvnhgcACDR/TempSuite8274044922258360219.adam
/tmp/adamTestMvnhgcACDR/TempSuite8274044922258360219.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite8274044922258360219.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite8274044922258360219.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/TempSuite8274044922258360219.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/TempSuite8274044922258360219.adam/part-00001-94a3c960-3505-4d03-b2e8-a95addc6b39f-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite8274044922258360219.adam/.part-00001-94a3c960-3505-4d03-b2e8-a95addc6b39f-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite8274044922258360219.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite8274044922258360219.adam/part-00002-94a3c960-3505-4d03-b2e8-a95addc6b39f-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite8274044922258360219.adam/part-00000-94a3c960-3505-4d03-b2e8-a95addc6b39f-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite8274044922258360219.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite8274044922258360219.adam/.part-00000-94a3c960-3505-4d03-b2e8-a95addc6b39f-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite8274044922258360219.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite8274044922258360219.adam/.part-00002-94a3c960-3505-4d03-b2e8-a95addc6b39f-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite8274044922258360219.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite1820738668687914326.gtf
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite1820738668687914326.gtf/.part-00003.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite1820738668687914326.gtf/.part-00000.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite1820738668687914326.gtf/_SUCCESS
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite1820738668687914326.gtf/part-00003
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite1820738668687914326.gtf/part-00000
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite1820738668687914326.gtf/part-00002
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite1820738668687914326.gtf/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite1820738668687914326.gtf/.part-00002.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite1820738668687914326.gtf/part-00001
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite1820738668687914326.gtf/.part-00001.crc
/tmp/adamTestMvnhgcACDR/TempSuite8390761262796136853.adam
/tmp/adamTestMvnhgcACDR/TempSuite8390761262796136853.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite8390761262796136853.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite8390761262796136853.adam/.part-00000-843416ff-e45f-4546-bf42-54c3ba1295b3-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite8390761262796136853.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite8390761262796136853.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite8390761262796136853.adam/part-00000-843416ff-e45f-4546-bf42-54c3ba1295b3-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite8121238421656120568
/tmp/adamTestMvnhgcACDR/TempSuite5440723441453299818
/tmp/adamTestMvnhgcACDR/TempSuite3473393859742099474.fq
/tmp/adamTestMvnhgcACDR/TempSuite3473393859742099474.fq/.part-00000.crc
/tmp/adamTestMvnhgcACDR/TempSuite3473393859742099474.fq/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite3473393859742099474.fq/part-00000
/tmp/adamTestMvnhgcACDR/TempSuite3473393859742099474.fq/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/6111850531649653039
/tmp/adamTestMvnhgcACDR/6111850531649653039/sorted.sam
/tmp/adamTestMvnhgcACDR/6111850531649653039/.sorted.sam.crc
/tmp/adamTestMvnhgcACDR/TempSuite1374178585395327694.adam
/tmp/adamTestMvnhgcACDR/TempSuite1374178585395327694.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite1374178585395327694.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite1374178585395327694.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite1374178585395327694.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite1374178585395327694.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite1374178585395327694.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite1374178585395327694.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite1374178585395327694.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite1374178585395327694.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite1374178585395327694.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite1374178585395327694.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite1374178585395327694.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite1374178585395327694.adam/_samples.avro
/tmp/adamTestMvnhgcACDR/TempSuite1374178585395327694.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite1374178585395327694.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite1374178585395327694.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite1374178585395327694.adam/._samples.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite1374178585395327694.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite2128449547469986473
/tmp/adamTestMvnhgcACDR/trinity.fa4322291368191771337.fa
/tmp/adamTestMvnhgcACDR/TempSuite1704457801902360665
/tmp/adamTestMvnhgcACDR/TempSuite5749972046249441946.sam
/tmp/adamTestMvnhgcACDR/TempSuite5749972046249441946.sam/part-r-00000.sam
/tmp/adamTestMvnhgcACDR/TempSuite5749972046249441946.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnhgcACDR/TempSuite5749972046249441946.sam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite5749972046249441946.sam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite1486778531698499130.fq
/tmp/adamTestMvnhgcACDR/TempSuite4416476030460886490
/tmp/adamTestMvnhgcACDR/TempSuite961322116085537735
/tmp/adamTestMvnhgcACDR/3705423965860520603
/tmp/adamTestMvnhgcACDR/3705423965860520603/unordered.sam
/tmp/adamTestMvnhgcACDR/3705423965860520603/.unordered.sam.crc
/tmp/adamTestMvnhgcACDR/TempSuite4178285618202487392.bed
/tmp/adamTestMvnhgcACDR/TempSuite4178285618202487392.bed/.part-00003.crc
/tmp/adamTestMvnhgcACDR/TempSuite4178285618202487392.bed/.part-00000.crc
/tmp/adamTestMvnhgcACDR/TempSuite4178285618202487392.bed/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite4178285618202487392.bed/part-00003
/tmp/adamTestMvnhgcACDR/TempSuite4178285618202487392.bed/part-00000
/tmp/adamTestMvnhgcACDR/TempSuite4178285618202487392.bed/part-00002
/tmp/adamTestMvnhgcACDR/TempSuite4178285618202487392.bed/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite4178285618202487392.bed/.part-00002.crc
/tmp/adamTestMvnhgcACDR/TempSuite4178285618202487392.bed/part-00001
/tmp/adamTestMvnhgcACDR/TempSuite4178285618202487392.bed/.part-00001.crc
/tmp/adamTestMvnhgcACDR/TempSuite4040016222057868277.adam
/tmp/adamTestMvnhgcACDR/TempSuite4040016222057868277.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite4040016222057868277.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite4040016222057868277.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite4040016222057868277.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/TempSuite4040016222057868277.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite4040016222057868277.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/TempSuite4040016222057868277.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite4040016222057868277.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite4040016222057868277.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite4040016222057868277.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite4040016222057868277.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite4040016222057868277.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite4040016222057868277.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite4040016222057868277.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite9106275174781319494.adam
/tmp/adamTestMvnhgcACDR/TempSuite9106275174781319494.adam/.part-00000-91775e61-c983-41c7-aa10-0e8323c2b1fa-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite9106275174781319494.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite9106275174781319494.adam/.part-00001-91775e61-c983-41c7-aa10-0e8323c2b1fa-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite9106275174781319494.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite9106275174781319494.adam/part-00000-91775e61-c983-41c7-aa10-0e8323c2b1fa-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite9106275174781319494.adam/part-00002-91775e61-c983-41c7-aa10-0e8323c2b1fa-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite9106275174781319494.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite9106275174781319494.adam/part-00001-91775e61-c983-41c7-aa10-0e8323c2b1fa-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite9106275174781319494.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite9106275174781319494.adam/.part-00002-91775e61-c983-41c7-aa10-0e8323c2b1fa-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite1904849594342219120
/tmp/adamTestMvnhgcACDR/TempSuite1269763983670024252.bed
/tmp/adamTestMvnhgcACDR/TempSuite1269763983670024252.bed/.part-00000.crc
/tmp/adamTestMvnhgcACDR/TempSuite1269763983670024252.bed/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite1269763983670024252.bed/part-00000
/tmp/adamTestMvnhgcACDR/TempSuite1269763983670024252.bed/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/.TempSuite7842518682276119227.sam.crc
/tmp/adamTestMvnhgcACDR/4540576541550530188
/tmp/adamTestMvnhgcACDR/4540576541550530188/predicate.3.adam
/tmp/adamTestMvnhgcACDR/4540576541550530188/predicate.3.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/4540576541550530188/predicate.3.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/4540576541550530188/predicate.3.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/4540576541550530188/predicate.3.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/4540576541550530188/predicate.3.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/4540576541550530188/predicate.3.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/4540576541550530188/predicate.3.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/4540576541550530188/predicate.3.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/4540576541550530188/predicate.3.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/4540576541550530188/predicate.3.adam/_references.avro
/tmp/adamTestMvnhgcACDR/4540576541550530188/predicate.3.adam/_metadata
/tmp/adamTestMvnhgcACDR/4540576541550530188/predicate.3.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/4540576541550530188/predicate.3.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/4540576541550530188/predicate.3.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite8320690225038434360.adam
/tmp/adamTestMvnhgcACDR/TempSuite8320690225038434360.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite8320690225038434360.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite8320690225038434360.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite8320690225038434360.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/TempSuite8320690225038434360.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite8320690225038434360.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/TempSuite8320690225038434360.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite8320690225038434360.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite8320690225038434360.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite8320690225038434360.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite8320690225038434360.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite8320690225038434360.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite8320690225038434360.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite8320690225038434360.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite8735636120268682064.adam
/tmp/adamTestMvnhgcACDR/TempSuite8735636120268682064.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite8735636120268682064.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite8735636120268682064.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite8735636120268682064.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/TempSuite8735636120268682064.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite8735636120268682064.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/TempSuite8735636120268682064.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite8735636120268682064.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite8735636120268682064.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite8735636120268682064.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite8735636120268682064.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite8735636120268682064.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite8735636120268682064.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite8735636120268682064.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/trinity.fa5207546088028354594.fa
/tmp/adamTestMvnhgcACDR/TempSuite2363377303073429262
/tmp/adamTestMvnhgcACDR/TempSuite7938874507666550735.adam
/tmp/adamTestMvnhgcACDR/TempSuite7938874507666550735.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite7938874507666550735.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite7938874507666550735.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite7938874507666550735.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite7938874507666550735.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite7938874507666550735.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite7938874507666550735.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite7938874507666550735.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite7938874507666550735.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite7938874507666550735.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite7938874507666550735.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite7938874507666550735.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite7938874507666550735.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite7938874507666550735.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite7938874507666550735.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite7938874507666550735.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite9035613960723894153
/tmp/adamTestMvnhgcACDR/TempSuite8770636679570181992
/tmp/adamTestMvnhgcACDR/TempSuite7769758399341888247.adam
/tmp/adamTestMvnhgcACDR/TempSuite7769758399341888247.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite7769758399341888247.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite7769758399341888247.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite7769758399341888247.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite7769758399341888247.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite7769758399341888247.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite7769758399341888247.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite7769758399341888247.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite7769758399341888247.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite7769758399341888247.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite7769758399341888247.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite7769758399341888247.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite7769758399341888247.adam/_samples.avro
/tmp/adamTestMvnhgcACDR/TempSuite7769758399341888247.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite7769758399341888247.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite7769758399341888247.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite7769758399341888247.adam/._samples.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite7769758399341888247.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite869484803841531857
/tmp/adamTestMvnhgcACDR/TempSuite2367593479042455698
/tmp/adamTestMvnhgcACDR/TempSuite1975035396772562545
/tmp/adamTestMvnhgcACDR/TempSuite369598797078971505.adam
/tmp/adamTestMvnhgcACDR/TempSuite369598797078971505.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite369598797078971505.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite369598797078971505.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite369598797078971505.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite369598797078971505.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite369598797078971505.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite369598797078971505.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite369598797078971505.adam/_samples.avro
/tmp/adamTestMvnhgcACDR/TempSuite369598797078971505.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite369598797078971505.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite369598797078971505.adam/._samples.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite369598797078971505.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite369598797078971505.adam/._header.crc
/tmp/adamTestMvnhgcACDR/TempSuite369598797078971505.adam/_header
/tmp/adamTestMvnhgcACDR/TempSuite7168056256233539312.adam
/tmp/adamTestMvnhgcACDR/TempSuite7168056256233539312.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite7168056256233539312.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite7168056256233539312.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite7168056256233539312.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/TempSuite7168056256233539312.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite7168056256233539312.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/TempSuite7168056256233539312.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite7168056256233539312.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite7168056256233539312.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite7168056256233539312.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite7168056256233539312.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite7168056256233539312.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite7168056256233539312.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite7168056256233539312.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3087245584093931219
/tmp/adamTestMvnhgcACDR/TempSuite3469150209362260293
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite5276092634507788799
/tmp/adamTestMvnhgcACDR/TempSuite3879541251572855846.adam
/tmp/adamTestMvnhgcACDR/TempSuite3879541251572855846.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite3879541251572855846.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite3879541251572855846.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite3879541251572855846.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite3879541251572855846.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite3879541251572855846.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite3879541251572855846.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite3879541251572855846.adam/_samples.avro
/tmp/adamTestMvnhgcACDR/TempSuite3879541251572855846.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite3879541251572855846.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite3879541251572855846.adam/._samples.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite3879541251572855846.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite3879541251572855846.adam/._header.crc
/tmp/adamTestMvnhgcACDR/TempSuite3879541251572855846.adam/_header
/tmp/adamTestMvnhgcACDR/.TempSuite9106438726582490344_1.fq.crc
/tmp/adamTestMvnhgcACDR/TempSuite2376599963753425066
/tmp/adamTestMvnhgcACDR/TempSuite4212110381731842350.adam
/tmp/adamTestMvnhgcACDR/TempSuite4212110381731842350.adam/part-00000-d5d6770c-7b44-43ef-8389-10dd6eee8c95-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite4212110381731842350.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite4212110381731842350.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite4212110381731842350.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite4212110381731842350.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite4212110381731842350.adam/.part-00000-d5d6770c-7b44-43ef-8389-10dd6eee8c95-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/unordered.sam4339832554013750962.sam
/tmp/adamTestMvnhgcACDR/javaAC3561889577012185667
/tmp/adamTestMvnhgcACDR/javaAC3561889577012185667/testRdd.read.adam
/tmp/adamTestMvnhgcACDR/javaAC3561889577012185667/testRdd.read.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/javaAC3561889577012185667/testRdd.read.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/javaAC3561889577012185667/testRdd.read.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/javaAC3561889577012185667/testRdd.read.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/javaAC3561889577012185667/testRdd.read.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/javaAC3561889577012185667/testRdd.read.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/javaAC3561889577012185667/testRdd.read.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/javaAC3561889577012185667/testRdd.read.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/javaAC3561889577012185667/testRdd.read.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/javaAC3561889577012185667/testRdd.read.adam/_references.avro
/tmp/adamTestMvnhgcACDR/javaAC3561889577012185667/testRdd.read.adam/_metadata
/tmp/adamTestMvnhgcACDR/javaAC3561889577012185667/testRdd.read.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/javaAC3561889577012185667/testRdd.read.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/javaAC3561889577012185667/testRdd.read.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/small.vcf7360039812323003575.vcf
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite865937232779179271
/tmp/adamTestMvnhgcACDR/TempSuite798710850563420974.adam
/tmp/adamTestMvnhgcACDR/TempSuite798710850563420974.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite798710850563420974.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite798710850563420974.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/TempSuite798710850563420974.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/TempSuite798710850563420974.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite798710850563420974.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite798710850563420974.adam/.part-00000-72d853ac-78f8-4fbb-80b2-c9bd345b16d0-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite798710850563420974.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite798710850563420974.adam/part-00000-72d853ac-78f8-4fbb-80b2-c9bd345b16d0-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite798710850563420974.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite2552783628554323624
/tmp/adamTestMvnhgcACDR/random.vcf5067680535856759834.vcf
/tmp/adamTestMvnhgcACDR/TempSuite5024624997519805377
/tmp/adamTestMvnhgcACDR/TempSuite2210214082306158610
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite8266439584075806539.fastq
/tmp/adamTestMvnhgcACDR/TempSuite4875412530691388132
/tmp/adamTestMvnhgcACDR/TempSuite3934878676852145083.adam
/tmp/adamTestMvnhgcACDR/TempSuite3934878676852145083.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite3934878676852145083.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite3934878676852145083.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite3934878676852145083.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite3934878676852145083.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite3934878676852145083.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/TempSuite3934878676852145083.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite3934878676852145083.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/TempSuite3934878676852145083.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite3934878676852145083.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite3934878676852145083.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite3934878676852145083.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite3934878676852145083.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite3934878676852145083.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite3934878676852145083.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite3934878676852145083.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite3934878676852145083.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite3934878676852145083.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite3934878676852145083.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite3934878676852145083.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite4567202946766238345
/tmp/adamTestMvnhgcACDR/TempSuite5464466681814872881
/tmp/adamTestMvnhgcACDR/TempSuite9004626246983172284.adam
/tmp/adamTestMvnhgcACDR/TempSuite9004626246983172284.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite9004626246983172284.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite9004626246983172284.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite9004626246983172284.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/TempSuite9004626246983172284.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite9004626246983172284.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/TempSuite9004626246983172284.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite9004626246983172284.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite9004626246983172284.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite9004626246983172284.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite9004626246983172284.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite9004626246983172284.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite9004626246983172284.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite9004626246983172284.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite2470860664016209037.gtf
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite2470860664016209037.gtf/.part-00003.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite2470860664016209037.gtf/.part-00000.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite2470860664016209037.gtf/_SUCCESS
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite2470860664016209037.gtf/part-00003
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite2470860664016209037.gtf/part-00000
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite2470860664016209037.gtf/part-00002
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite2470860664016209037.gtf/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite2470860664016209037.gtf/.part-00002.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite2470860664016209037.gtf/part-00001
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite2470860664016209037.gtf/.part-00001.crc
/tmp/adamTestMvnhgcACDR/TempSuite139232902610462724.adam
/tmp/adamTestMvnhgcACDR/TempSuite139232902610462724.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite139232902610462724.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite139232902610462724.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite139232902610462724.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite139232902610462724.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite139232902610462724.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite139232902610462724.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite139232902610462724.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite139232902610462724.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite139232902610462724.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite139232902610462724.adam/._header.crc
/tmp/adamTestMvnhgcACDR/TempSuite139232902610462724.adam/_header
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite9032557451682247975.fastq
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite9032557451682247975.fastq/.part-00003.crc
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite9032557451682247975.fastq/.part-00000.crc
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite9032557451682247975.fastq/_SUCCESS
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite9032557451682247975.fastq/part-00003
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite9032557451682247975.fastq/part-00000
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite9032557451682247975.fastq/part-00002
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite9032557451682247975.fastq/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite9032557451682247975.fastq/.part-00002.crc
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite9032557451682247975.fastq/part-00001
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite9032557451682247975.fastq/.part-00001.crc
/tmp/adamTestMvnhgcACDR/9211330130237522882
/tmp/adamTestMvnhgcACDR/9211330130237522882/sorted.vcf
/tmp/adamTestMvnhgcACDR/9211330130237522882/.sorted.vcf.crc
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite2713322777816467032
/tmp/adamTestMvnhgcACDR/TempSuite7147572440405863080.adam
/tmp/adamTestMvnhgcACDR/TempSuite7147572440405863080.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite7147572440405863080.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite7147572440405863080.adam/part-00000-14662d64-fa8c-4d7f-8dd1-df048e29b106-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite7147572440405863080.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite7147572440405863080.adam/_samples.avro
/tmp/adamTestMvnhgcACDR/TempSuite7147572440405863080.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite7147572440405863080.adam/._samples.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite7147572440405863080.adam/._header.crc
/tmp/adamTestMvnhgcACDR/TempSuite7147572440405863080.adam/.part-00000-14662d64-fa8c-4d7f-8dd1-df048e29b106-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite7147572440405863080.adam/_header
/tmp/adamTestMvnhgcACDR/TempSuite2599123060680005454.adam
/tmp/adamTestMvnhgcACDR/TempSuite2599123060680005454.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite2599123060680005454.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite2599123060680005454.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite2599123060680005454.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite2599123060680005454.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite2599123060680005454.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite2599123060680005454.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite2599123060680005454.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite2599123060680005454.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite2599123060680005454.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite2599123060680005454.adam/._header.crc
/tmp/adamTestMvnhgcACDR/TempSuite2599123060680005454.adam/_header
/tmp/adamTestMvnhgcACDR/TempSuite2766075328621090401.bed
/tmp/adamTestMvnhgcACDR/TempSuite2766075328621090401.bed/.part-00003.crc
/tmp/adamTestMvnhgcACDR/TempSuite2766075328621090401.bed/.part-00000.crc
/tmp/adamTestMvnhgcACDR/TempSuite2766075328621090401.bed/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite2766075328621090401.bed/part-00003
/tmp/adamTestMvnhgcACDR/TempSuite2766075328621090401.bed/part-00000
/tmp/adamTestMvnhgcACDR/TempSuite2766075328621090401.bed/part-00002
/tmp/adamTestMvnhgcACDR/TempSuite2766075328621090401.bed/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite2766075328621090401.bed/.part-00002.crc
/tmp/adamTestMvnhgcACDR/TempSuite2766075328621090401.bed/part-00001
/tmp/adamTestMvnhgcACDR/TempSuite2766075328621090401.bed/.part-00001.crc
/tmp/adamTestMvnhgcACDR/TempSuite6186726142943704458
/tmp/adamTestMvnhgcACDR/TempSuite6301259262439467468
/tmp/adamTestMvnhgcACDR/8570976692034585748
/tmp/adamTestMvnhgcACDR/8570976692034585748/variants.lex.adam
/tmp/adamTestMvnhgcACDR/8570976692034585748/variants.lex.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/8570976692034585748/variants.lex.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/8570976692034585748/variants.lex.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/8570976692034585748/variants.lex.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/8570976692034585748/variants.lex.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/8570976692034585748/variants.lex.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/8570976692034585748/variants.lex.adam/_references.avro
/tmp/adamTestMvnhgcACDR/8570976692034585748/variants.lex.adam/_metadata
/tmp/adamTestMvnhgcACDR/8570976692034585748/variants.lex.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/8570976692034585748/variants.lex.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/8570976692034585748/variants.lex.adam/._header.crc
/tmp/adamTestMvnhgcACDR/8570976692034585748/variants.lex.adam/_header
/tmp/adamTestMvnhgcACDR/ordered.sam1365227472019107829.sam
/tmp/adamTestMvnhgcACDR/2939734888076109511
/tmp/adamTestMvnhgcACDR/2939734888076109511/sorted-variants.vcf
/tmp/adamTestMvnhgcACDR/2939734888076109511/.sorted-variants.vcf.crc
/tmp/adamTestMvnhgcACDR/8507922427055857759
/tmp/adamTestMvnhgcACDR/8507922427055857759/ordered.sam
/tmp/adamTestMvnhgcACDR/8507922427055857759/.ordered.sam.crc
/tmp/adamTestMvnhgcACDR/TempSuite1186377572014782874reads12.sam_2
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4037172817723027443.gff3
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4037172817723027443.gff3/.part-00003.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4037172817723027443.gff3/.part-00000.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4037172817723027443.gff3/_SUCCESS
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4037172817723027443.gff3/part-00003
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4037172817723027443.gff3/part-00000
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4037172817723027443.gff3/part-00002
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4037172817723027443.gff3/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4037172817723027443.gff3/.part-00002.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4037172817723027443.gff3/part-00001
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4037172817723027443.gff3/.part-00001.crc
/tmp/adamTestMvnhgcACDR/TempSuite5123190528797647369
/tmp/adamTestMvnhgcACDR/TempSuite1193387505187118856.bed
/tmp/adamTestMvnhgcACDR/TempSuite1193387505187118856.bed/.part-00000.crc
/tmp/adamTestMvnhgcACDR/TempSuite1193387505187118856.bed/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite1193387505187118856.bed/part-00000
/tmp/adamTestMvnhgcACDR/TempSuite1193387505187118856.bed/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite6550903742312731250
/tmp/adamTestMvnhgcACDR/5398911492771197969
/tmp/adamTestMvnhgcACDR/5398911492771197969/unordered.sam
/tmp/adamTestMvnhgcACDR/5398911492771197969/.unordered.sam.crc
/tmp/adamTestMvnhgcACDR/TempSuite7389620949971584563
/tmp/adamTestMvnhgcACDR/javaAC8430821013144404097
/tmp/adamTestMvnhgcACDR/javaAC8430821013144404097/testRdd.coverage.adam
/tmp/adamTestMvnhgcACDR/javaAC8430821013144404097/testRdd.coverage.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/javaAC8430821013144404097/testRdd.coverage.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnhgcACDR/javaAC8430821013144404097/testRdd.coverage.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/javaAC8430821013144404097/testRdd.coverage.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/javaAC8430821013144404097/testRdd.coverage.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/javaAC8430821013144404097/testRdd.coverage.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/javaAC8430821013144404097/testRdd.coverage.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/javaAC8430821013144404097/testRdd.coverage.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnhgcACDR/javaAC8430821013144404097/testRdd.coverage.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/javaAC8430821013144404097/testRdd.coverage.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnhgcACDR/javaAC8430821013144404097/testRdd.coverage.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/javaAC8430821013144404097/testRdd.coverage.adam/_references.avro
/tmp/adamTestMvnhgcACDR/javaAC8430821013144404097/testRdd.coverage.adam/_samples.avro
/tmp/adamTestMvnhgcACDR/javaAC8430821013144404097/testRdd.coverage.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/javaAC8430821013144404097/testRdd.coverage.adam/_metadata
/tmp/adamTestMvnhgcACDR/javaAC8430821013144404097/testRdd.coverage.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/javaAC8430821013144404097/testRdd.coverage.adam/._samples.avro.crc
/tmp/adamTestMvnhgcACDR/javaAC8430821013144404097/testRdd.coverage.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite4222301087395007808.adam
/tmp/adamTestMvnhgcACDR/TempSuite4222301087395007808.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite4222301087395007808.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite4222301087395007808.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite4222301087395007808.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/TempSuite4222301087395007808.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite4222301087395007808.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/TempSuite4222301087395007808.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite4222301087395007808.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite4222301087395007808.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite4222301087395007808.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite4222301087395007808.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite4222301087395007808.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite4222301087395007808.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite4222301087395007808.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite8521942803833492883.adam
/tmp/adamTestMvnhgcACDR/TempSuite8521942803833492883.adam/part-00000-9ea284f8-5095-43b2-b762-85bd598260c3-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite8521942803833492883.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite8521942803833492883.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite8521942803833492883.adam/.part-00000-9ea284f8-5095-43b2-b762-85bd598260c3-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite8521942803833492883.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite8521942803833492883.adam/_samples.avro
/tmp/adamTestMvnhgcACDR/TempSuite8521942803833492883.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite8521942803833492883.adam/._samples.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite8521942803833492883.adam/._header.crc
/tmp/adamTestMvnhgcACDR/TempSuite8521942803833492883.adam/_header
/tmp/adamTestMvnhgcACDR/TempSuite4560356815835372725.sam
/tmp/adamTestMvnhgcACDR/TempSuite4560356815835372725.sam/part-r-00000.sam
/tmp/adamTestMvnhgcACDR/TempSuite4560356815835372725.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnhgcACDR/TempSuite4560356815835372725.sam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite4560356815835372725.sam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite7544710992475379201.adam
/tmp/adamTestMvnhgcACDR/TempSuite7544710992475379201.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite7544710992475379201.adam/.part-00000-e4875fee-920f-4801-954a-dba9f0e8edb7-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite7544710992475379201.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite7544710992475379201.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite7544710992475379201.adam/_samples.avro
/tmp/adamTestMvnhgcACDR/TempSuite7544710992475379201.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite7544710992475379201.adam/part-00000-e4875fee-920f-4801-954a-dba9f0e8edb7-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite7544710992475379201.adam/._samples.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite7544710992475379201.adam/._header.crc
/tmp/adamTestMvnhgcACDR/TempSuite7544710992475379201.adam/_header
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite8784572612607133158
/tmp/adamTestMvnhgcACDR/TempSuite1312560511912030399
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite6714257097913557521.gtf
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite6714257097913557521.gtf/.part-00003.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite6714257097913557521.gtf/.part-00000.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite6714257097913557521.gtf/_SUCCESS
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite6714257097913557521.gtf/part-00003
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite6714257097913557521.gtf/part-00000
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite6714257097913557521.gtf/part-00002
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite6714257097913557521.gtf/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite6714257097913557521.gtf/.part-00002.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite6714257097913557521.gtf/part-00001
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite6714257097913557521.gtf/.part-00001.crc
/tmp/adamTestMvnhgcACDR/.TempSuite4080964054207122683.bam.crc
/tmp/adamTestMvnhgcACDR/8501509440370155697
/tmp/adamTestMvnhgcACDR/8501509440370155697/.artificial.cram.crc
/tmp/adamTestMvnhgcACDR/8501509440370155697/artificial.cram
/tmp/adamTestMvnhgcACDR/bqsr1.sam7628019281364027140.sam
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite607308140614335032
/tmp/adamTestMvnhgcACDR/random.vcf6697269614646452969.vcf
/tmp/adamTestMvnhgcACDR/javaAC7756498055197110146
/tmp/adamTestMvnhgcACDR/javaAC7756498055197110146/testRdd.sequences.adam
/tmp/adamTestMvnhgcACDR/javaAC7756498055197110146/testRdd.sequences.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/javaAC7756498055197110146/testRdd.sequences.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/javaAC7756498055197110146/testRdd.sequences.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/javaAC7756498055197110146/testRdd.sequences.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/javaAC7756498055197110146/testRdd.sequences.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/javaAC7756498055197110146/testRdd.sequences.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/javaAC7756498055197110146/testRdd.sequences.adam/_references.avro
/tmp/adamTestMvnhgcACDR/javaAC7756498055197110146/testRdd.sequences.adam/_metadata
/tmp/adamTestMvnhgcACDR/javaAC7756498055197110146/testRdd.sequences.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/javaAC7756498055197110146/testRdd.sequences.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3623107220771836776
/tmp/adamTestMvnhgcACDR/TempSuite5389842522793026124
/tmp/adamTestMvnhgcACDR/TempSuite611920347575699688.adam
/tmp/adamTestMvnhgcACDR/TempSuite611920347575699688.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite611920347575699688.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite611920347575699688.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/TempSuite611920347575699688.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/TempSuite611920347575699688.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite611920347575699688.adam/.part-00000-d15446dd-99b6-401b-a794-931b125fbbd3-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite611920347575699688.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite611920347575699688.adam/part-00000-d15446dd-99b6-401b-a794-931b125fbbd3-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite611920347575699688.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite611920347575699688.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite5745700173334144349
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite7067168731893543579.fasta
/tmp/adamTestMvnhgcACDR/TempSuite6927413301585556365.adam
/tmp/adamTestMvnhgcACDR/TempSuite6927413301585556365.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite6927413301585556365.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite6927413301585556365.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite6927413301585556365.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite6927413301585556365.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite6927413301585556365.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite6927413301585556365.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite6927413301585556365.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite6927413301585556365.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite6927413301585556365.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite6927413301585556365.adam/._header.crc
/tmp/adamTestMvnhgcACDR/TempSuite6927413301585556365.adam/_header
/tmp/adamTestMvnhgcACDR/artificial.cram7355829413560751277.cram
/tmp/adamTestMvnhgcACDR/TempSuite5141385622699565795.bed
/tmp/adamTestMvnhgcACDR/TempSuite5141385622699565795.bed/.part-00000.crc
/tmp/adamTestMvnhgcACDR/TempSuite5141385622699565795.bed/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite5141385622699565795.bed/part-00000
/tmp/adamTestMvnhgcACDR/TempSuite5141385622699565795.bed/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/unordered.sam5496506386405240224.sam
/tmp/adamTestMvnhgcACDR/TempSuite3306659423439309349
/tmp/adamTestMvnhgcACDR/TempSuite869484803841531857.adam
/tmp/adamTestMvnhgcACDR/TempSuite869484803841531857.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite869484803841531857.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite869484803841531857.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite869484803841531857.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite869484803841531857.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite869484803841531857.adam/._partitionMap.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite869484803841531857.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/TempSuite869484803841531857.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite869484803841531857.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/TempSuite869484803841531857.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite869484803841531857.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite869484803841531857.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite869484803841531857.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite869484803841531857.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite869484803841531857.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite869484803841531857.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite869484803841531857.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite869484803841531857.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite869484803841531857.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite869484803841531857.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite869484803841531857.adam/_partitionMap.avro
/tmp/adamTestMvnhgcACDR/TempSuite869484803841531857.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite8539105514419765067
/tmp/adamTestMvnhgcACDR/TempSuite8126279075831892412.bam
/tmp/adamTestMvnhgcACDR/TempSuite8126279075831892412.bam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite8126279075831892412.bam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite8126279075831892412.bam/.part-r-00000.bam.crc
/tmp/adamTestMvnhgcACDR/TempSuite8126279075831892412.bam/part-r-00000.bam
/tmp/adamTestMvnhgcACDR/7545325328318395149
/tmp/adamTestMvnhgcACDR/7545325328318395149/predicate.1.adam
/tmp/adamTestMvnhgcACDR/7545325328318395149/predicate.1.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/7545325328318395149/predicate.1.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/7545325328318395149/predicate.1.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/7545325328318395149/predicate.1.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/7545325328318395149/predicate.1.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/7545325328318395149/predicate.1.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/7545325328318395149/predicate.1.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/7545325328318395149/predicate.1.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/7545325328318395149/predicate.1.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/7545325328318395149/predicate.1.adam/_references.avro
/tmp/adamTestMvnhgcACDR/7545325328318395149/predicate.1.adam/_metadata
/tmp/adamTestMvnhgcACDR/7545325328318395149/predicate.1.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/7545325328318395149/predicate.1.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/7545325328318395149/predicate.1.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite1057665471103237447.adam
/tmp/adamTestMvnhgcACDR/TempSuite1057665471103237447.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite1057665471103237447.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite1057665471103237447.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite1057665471103237447.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite1057665471103237447.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite1057665471103237447.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite1057665471103237447.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite1057665471103237447.adam/_samples.avro
/tmp/adamTestMvnhgcACDR/TempSuite1057665471103237447.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite1057665471103237447.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite1057665471103237447.adam/._samples.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite1057665471103237447.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite1057665471103237447.adam/._header.crc
/tmp/adamTestMvnhgcACDR/TempSuite1057665471103237447.adam/_header
/tmp/adamTestMvnhgcACDR/small.vcf654025990535709236.vcf
/tmp/adamTestMvnhgcACDR/TempSuite3220899281634082496.adam
/tmp/adamTestMvnhgcACDR/TempSuite3220899281634082496.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite3220899281634082496.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite3220899281634082496.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite3220899281634082496.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite3220899281634082496.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite3220899281634082496.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite3220899281634082496.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite3220899281634082496.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite3220899281634082496.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite3220899281634082496.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite3220899281634082496.adam/._header.crc
/tmp/adamTestMvnhgcACDR/TempSuite3220899281634082496.adam/_header
/tmp/adamTestMvnhgcACDR/.FeatureDatasetFunctionsSuite3011594730700090729.bed.crc
/tmp/adamTestMvnhgcACDR/TempSuite6793875387143215679
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite607308140614335032.narrowPeak
/tmp/adamTestMvnhgcACDR/TempSuite4611031656958292126
/tmp/adamTestMvnhgcACDR/TempSuite8115548309718430862
/tmp/adamTestMvnhgcACDR/TempSuite8723240986469453010.adam
/tmp/adamTestMvnhgcACDR/TempSuite8723240986469453010.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite8723240986469453010.adam/.part-00000-ab44a4ec-acde-4a86-af31-9169833e5683-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite8723240986469453010.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite8723240986469453010.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/TempSuite8723240986469453010.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/TempSuite8723240986469453010.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite8723240986469453010.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite8723240986469453010.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite8723240986469453010.adam/part-00000-ab44a4ec-acde-4a86-af31-9169833e5683-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite8723240986469453010.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite3723511810053842350
/tmp/adamTestMvnhgcACDR/TempSuite8932844426019165668
/tmp/adamTestMvnhgcACDR/1443117006302390009
/tmp/adamTestMvnhgcACDR/1443117006302390009/bqsr1.vcf.bgz
/tmp/adamTestMvnhgcACDR/1443117006302390009/bqsr1.vcf.bgz/part-r-00000.bgz
/tmp/adamTestMvnhgcACDR/1443117006302390009/bqsr1.vcf.bgz/.part-r-00000.bgz.crc
/tmp/adamTestMvnhgcACDR/1443117006302390009/bqsr1.vcf.bgz/_SUCCESS
/tmp/adamTestMvnhgcACDR/1443117006302390009/bqsr1.vcf.bgz/.part-r-00003.bgz.crc
/tmp/adamTestMvnhgcACDR/1443117006302390009/bqsr1.vcf.bgz/part-r-00001.bgz
/tmp/adamTestMvnhgcACDR/1443117006302390009/bqsr1.vcf.bgz/part-r-00003.bgz
/tmp/adamTestMvnhgcACDR/1443117006302390009/bqsr1.vcf.bgz/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/1443117006302390009/bqsr1.vcf.bgz/part-r-00002.bgz
/tmp/adamTestMvnhgcACDR/1443117006302390009/bqsr1.vcf.bgz/.part-r-00002.bgz.crc
/tmp/adamTestMvnhgcACDR/1443117006302390009/bqsr1.vcf.bgz/.part-r-00001.bgz.crc
/tmp/adamTestMvnhgcACDR/TempSuite3799428486083390308.adam
/tmp/adamTestMvnhgcACDR/TempSuite3799428486083390308.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite3799428486083390308.adam/.part-00000-968ae7f3-dd3a-4d63-aa82-3f94b2e8a2ec-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite3799428486083390308.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite3799428486083390308.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite3799428486083390308.adam/_samples.avro
/tmp/adamTestMvnhgcACDR/TempSuite3799428486083390308.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite3799428486083390308.adam/._samples.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite3799428486083390308.adam/part-00000-968ae7f3-dd3a-4d63-aa82-3f94b2e8a2ec-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite3799428486083390308.adam/._header.crc
/tmp/adamTestMvnhgcACDR/TempSuite3799428486083390308.adam/_header
/tmp/adamTestMvnhgcACDR/TempSuite5655763290433372346
/tmp/adamTestMvnhgcACDR/TempSuite6684599912946625403.adam
/tmp/adamTestMvnhgcACDR/TempSuite6684599912946625403.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite6684599912946625403.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite6684599912946625403.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite6684599912946625403.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite6684599912946625403.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite6684599912946625403.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite6684599912946625403.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite6684599912946625403.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite6684599912946625403.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite6684599912946625403.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite6684599912946625403.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite6684599912946625403.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite6684599912946625403.adam/_samples.avro
/tmp/adamTestMvnhgcACDR/TempSuite6684599912946625403.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite6684599912946625403.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite6684599912946625403.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite6684599912946625403.adam/._samples.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite6684599912946625403.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite2552783628554323624.adam
/tmp/adamTestMvnhgcACDR/TempSuite2552783628554323624.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite2552783628554323624.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite2552783628554323624.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/TempSuite2552783628554323624.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/TempSuite2552783628554323624.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite2552783628554323624.adam/.part-00000-c1dc4010-9f45-4209-8b31-ed463cd517f5-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite2552783628554323624.adam/part-00001-c1dc4010-9f45-4209-8b31-ed463cd517f5-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite2552783628554323624.adam/part-00002-c1dc4010-9f45-4209-8b31-ed463cd517f5-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite2552783628554323624.adam/.part-00002-c1dc4010-9f45-4209-8b31-ed463cd517f5-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite2552783628554323624.adam/part-00000-c1dc4010-9f45-4209-8b31-ed463cd517f5-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite2552783628554323624.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite2552783628554323624.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite2552783628554323624.adam/.part-00001-c1dc4010-9f45-4209-8b31-ed463cd517f5-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite2552783628554323624.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite3508639149360931455
/tmp/adamTestMvnhgcACDR/TempSuite1675114548622646190
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3623107220771836776.bed
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3623107220771836776.bed/.part-00003.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3623107220771836776.bed/.part-00000.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3623107220771836776.bed/_SUCCESS
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3623107220771836776.bed/part-00003
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3623107220771836776.bed/part-00000
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3623107220771836776.bed/part-00002
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3623107220771836776.bed/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3623107220771836776.bed/.part-00002.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3623107220771836776.bed/part-00001
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3623107220771836776.bed/.part-00001.crc
/tmp/adamTestMvnhgcACDR/TempSuite2092020424475632957.sam
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite8112301296591659090
/tmp/adamTestMvnhgcACDR/TempSuite6200121343117841637.vcf
/tmp/adamTestMvnhgcACDR/TempSuite6200121343117841637.vcf/.part-r-00000.crc
/tmp/adamTestMvnhgcACDR/TempSuite6200121343117841637.vcf/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite6200121343117841637.vcf/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite6200121343117841637.vcf/part-r-00000
/tmp/adamTestMvnhgcACDR/TempSuite3078081094319829089
/tmp/adamTestMvnhgcACDR/TempSuite7416858071183701431.adam
/tmp/adamTestMvnhgcACDR/TempSuite7416858071183701431.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite7416858071183701431.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite7416858071183701431.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite7416858071183701431.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite7416858071183701431.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite7416858071183701431.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite7416858071183701431.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite7416858071183701431.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite7416858071183701431.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite7416858071183701431.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite8368928984751165833.bed
/tmp/adamTestMvnhgcACDR/TempSuite8368928984751165833.bed/.part-00000.crc
/tmp/adamTestMvnhgcACDR/TempSuite8368928984751165833.bed/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite8368928984751165833.bed/part-00000
/tmp/adamTestMvnhgcACDR/TempSuite8368928984751165833.bed/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite8243339695291258598
/tmp/adamTestMvnhgcACDR/TempSuite6162417547147425301
/tmp/adamTestMvnhgcACDR/random.vcf4271405659167009897.vcf
/tmp/adamTestMvnhgcACDR/TempSuite4855646693453521684
/tmp/adamTestMvnhgcACDR/TempSuite8975121607261880737.adam
/tmp/adamTestMvnhgcACDR/TempSuite8975121607261880737.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite8975121607261880737.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite8975121607261880737.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite8975121607261880737.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/TempSuite8975121607261880737.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite8975121607261880737.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/TempSuite8975121607261880737.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite8975121607261880737.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite8975121607261880737.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite8975121607261880737.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite8975121607261880737.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite8975121607261880737.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite8975121607261880737.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite8975121607261880737.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite8200628952393097148.adam
/tmp/adamTestMvnhgcACDR/TempSuite8200628952393097148.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite8200628952393097148.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite8200628952393097148.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite8200628952393097148.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/TempSuite8200628952393097148.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite8200628952393097148.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/TempSuite8200628952393097148.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite8200628952393097148.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite8200628952393097148.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite8200628952393097148.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite8200628952393097148.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite8200628952393097148.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite8200628952393097148.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite8200628952393097148.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite3765618463272173478
/tmp/adamTestMvnhgcACDR/5323527748858807010
/tmp/adamTestMvnhgcACDR/5323527748858807010/.sorted.lex.vcf.crc
/tmp/adamTestMvnhgcACDR/5323527748858807010/sorted.lex.vcf
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite9017131257838576254
/tmp/adamTestMvnhgcACDR/TempSuite7067481953914277040
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite1967541123875932591.narrowPeak
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite1967541123875932591.narrowPeak/.part-00003.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite1967541123875932591.narrowPeak/.part-00000.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite1967541123875932591.narrowPeak/_SUCCESS
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite1967541123875932591.narrowPeak/part-00003
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite1967541123875932591.narrowPeak/part-00000
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite1967541123875932591.narrowPeak/part-00002
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite1967541123875932591.narrowPeak/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite1967541123875932591.narrowPeak/.part-00002.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite1967541123875932591.narrowPeak/part-00001
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite1967541123875932591.narrowPeak/.part-00001.crc
/tmp/adamTestMvnhgcACDR/TempSuite3406156739935461473.fa
/tmp/adamTestMvnhgcACDR/TempSuite3406156739935461473.fa/.part-00000.crc
/tmp/adamTestMvnhgcACDR/TempSuite3406156739935461473.fa/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite3406156739935461473.fa/part-00000
/tmp/adamTestMvnhgcACDR/TempSuite3406156739935461473.fa/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite2223053413827575967
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite7471662212566447876
/tmp/adamTestMvnhgcACDR/TempSuite1359001996551727918
/tmp/adamTestMvnhgcACDR/TempSuite4087066686689061741.adam
/tmp/adamTestMvnhgcACDR/TempSuite4087066686689061741.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite4087066686689061741.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite4087066686689061741.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite4087066686689061741.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite4087066686689061741.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite4087066686689061741.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite4087066686689061741.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite4087066686689061741.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite4087066686689061741.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite4087066686689061741.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite4087066686689061741.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite4087066686689061741.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite4087066686689061741.adam/_samples.avro
/tmp/adamTestMvnhgcACDR/TempSuite4087066686689061741.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite4087066686689061741.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite4087066686689061741.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite4087066686689061741.adam/._samples.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite4087066686689061741.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite4087066686689061741.adam/._header.crc
/tmp/adamTestMvnhgcACDR/TempSuite4087066686689061741.adam/_header
/tmp/adamTestMvnhgcACDR/TempSuite3740729470435838568.adam
/tmp/adamTestMvnhgcACDR/TempSuite3740729470435838568.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite3740729470435838568.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite3740729470435838568.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite3740729470435838568.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/TempSuite3740729470435838568.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite3740729470435838568.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/TempSuite3740729470435838568.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite3740729470435838568.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite3740729470435838568.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite3740729470435838568.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite3740729470435838568.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite3740729470435838568.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite3740729470435838568.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite3740729470435838568.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite659850082104784305
/tmp/adamTestMvnhgcACDR/TempSuite749042013073102559
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite5807430225199591214.interval_list
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite4858333280945404989
/tmp/adamTestMvnhgcACDR/TempSuite9112143629509839626
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite10771836550283350
/tmp/adamTestMvnhgcACDR/5587234969406781842
/tmp/adamTestMvnhgcACDR/5587234969406781842/unordered.sam
/tmp/adamTestMvnhgcACDR/5587234969406781842/.unordered.sam.crc
/tmp/adamTestMvnhgcACDR/.SliceDatasetSuite632850092380850391.fasta.crc
/tmp/adamTestMvnhgcACDR/TempSuite6015341696228394673.bed
/tmp/adamTestMvnhgcACDR/TempSuite6015341696228394673.bed/.part-00003.crc
/tmp/adamTestMvnhgcACDR/TempSuite6015341696228394673.bed/.part-00000.crc
/tmp/adamTestMvnhgcACDR/TempSuite6015341696228394673.bed/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite6015341696228394673.bed/part-00003
/tmp/adamTestMvnhgcACDR/TempSuite6015341696228394673.bed/part-00000
/tmp/adamTestMvnhgcACDR/TempSuite6015341696228394673.bed/part-00002
/tmp/adamTestMvnhgcACDR/TempSuite6015341696228394673.bed/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite6015341696228394673.bed/.part-00002.crc
/tmp/adamTestMvnhgcACDR/TempSuite6015341696228394673.bed/part-00001
/tmp/adamTestMvnhgcACDR/TempSuite6015341696228394673.bed/.part-00001.crc
/tmp/adamTestMvnhgcACDR/TempSuite1890715222408166970.adam
/tmp/adamTestMvnhgcACDR/TempSuite1890715222408166970.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite1890715222408166970.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite1890715222408166970.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/TempSuite1890715222408166970.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/TempSuite1890715222408166970.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite1890715222408166970.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite1890715222408166970.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite1890715222408166970.adam/.part-00000-d3ff5d80-ac32-42ae-9588-4841b2f776cb-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite1890715222408166970.adam/part-00000-d3ff5d80-ac32-42ae-9588-4841b2f776cb-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite1890715222408166970.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite3740729470435838568
/tmp/adamTestMvnhgcACDR/.FeatureDatasetFunctionsSuite1443345709800682972.bed.crc
/tmp/adamTestMvnhgcACDR/TempSuite2716938334741165713.bam
/tmp/adamTestMvnhgcACDR/TempSuite2716938334741165713.bam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite2716938334741165713.bam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite2716938334741165713.bam/.part-r-00000.bam.crc
/tmp/adamTestMvnhgcACDR/TempSuite2716938334741165713.bam/part-r-00000.bam
/tmp/adamTestMvnhgcACDR/TempSuite7182425202216468876
/tmp/adamTestMvnhgcACDR/TempSuite7257290334419438593
/tmp/adamTestMvnhgcACDR/TempSuite6594996293425111992
/tmp/adamTestMvnhgcACDR/2679696951590247362
/tmp/adamTestMvnhgcACDR/2679696951590247362/unordered.bam
/tmp/adamTestMvnhgcACDR/2679696951590247362/.unordered.bam.crc
/tmp/adamTestMvnhgcACDR/TempSuite4412836651107123675.adam
/tmp/adamTestMvnhgcACDR/TempSuite4412836651107123675.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite4412836651107123675.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite4412836651107123675.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite4412836651107123675.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite4412836651107123675.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite4412836651107123675.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite4412836651107123675.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite4412836651107123675.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite4412836651107123675.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite4412836651107123675.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite2969717607325796893
/tmp/adamTestMvnhgcACDR/TempSuite5913818809683048785
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite928934282726494402
/tmp/adamTestMvnhgcACDR/TempSuite5358476212778820415
/tmp/adamTestMvnhgcACDR/8269699086298891237
/tmp/adamTestMvnhgcACDR/8269699086298891237/out.sam_tail
/tmp/adamTestMvnhgcACDR/8269699086298891237/out.sam_tail/part-r-00000.sam
/tmp/adamTestMvnhgcACDR/8269699086298891237/out.sam_tail/.part-r-00003.sam.crc
/tmp/adamTestMvnhgcACDR/8269699086298891237/out.sam_tail/.part-r-00000.sam.crc
/tmp/adamTestMvnhgcACDR/8269699086298891237/out.sam_tail/part-r-00001.sam
/tmp/adamTestMvnhgcACDR/8269699086298891237/out.sam_tail/.part-r-00002.sam.crc
/tmp/adamTestMvnhgcACDR/8269699086298891237/out.sam_tail/_SUCCESS
/tmp/adamTestMvnhgcACDR/8269699086298891237/out.sam_tail/.part-r-00001.sam.crc
/tmp/adamTestMvnhgcACDR/8269699086298891237/out.sam_tail/part-r-00003.sam
/tmp/adamTestMvnhgcACDR/8269699086298891237/out.sam_tail/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/8269699086298891237/out.sam_tail/part-r-00002.sam
/tmp/adamTestMvnhgcACDR/8269699086298891237/.out.sam.crc
/tmp/adamTestMvnhgcACDR/8269699086298891237/out.sam
/tmp/adamTestMvnhgcACDR/8269699086298891237/out.sam_head
/tmp/adamTestMvnhgcACDR/8269699086298891237/.out.sam_head.crc
/tmp/adamTestMvnhgcACDR/TempSuite6684599912946625403
/tmp/adamTestMvnhgcACDR/unordered.sam8673792617564881340.sam
/tmp/adamTestMvnhgcACDR/2399093860919258900
/tmp/adamTestMvnhgcACDR/2399093860919258900/out.sam_tail
/tmp/adamTestMvnhgcACDR/2399093860919258900/out.sam_tail/part-r-00000.sam
/tmp/adamTestMvnhgcACDR/2399093860919258900/out.sam_tail/.part-r-00003.sam.crc
/tmp/adamTestMvnhgcACDR/2399093860919258900/out.sam_tail/.part-r-00000.sam.crc
/tmp/adamTestMvnhgcACDR/2399093860919258900/out.sam_tail/part-r-00001.sam
/tmp/adamTestMvnhgcACDR/2399093860919258900/out.sam_tail/.part-r-00002.sam.crc
/tmp/adamTestMvnhgcACDR/2399093860919258900/out.sam_tail/_SUCCESS
/tmp/adamTestMvnhgcACDR/2399093860919258900/out.sam_tail/.part-r-00001.sam.crc
/tmp/adamTestMvnhgcACDR/2399093860919258900/out.sam_tail/part-r-00003.sam
/tmp/adamTestMvnhgcACDR/2399093860919258900/out.sam_tail/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/2399093860919258900/out.sam_tail/part-r-00002.sam
/tmp/adamTestMvnhgcACDR/2399093860919258900/.out.sam.crc
/tmp/adamTestMvnhgcACDR/2399093860919258900/out.sam
/tmp/adamTestMvnhgcACDR/2399093860919258900/out.sam_head
/tmp/adamTestMvnhgcACDR/2399093860919258900/.out.sam_head.crc
/tmp/adamTestMvnhgcACDR/TempSuite347555735488649255
/tmp/adamTestMvnhgcACDR/5655146362070705486
/tmp/adamTestMvnhgcACDR/5655146362070705486/sorted.vcf
/tmp/adamTestMvnhgcACDR/5655146362070705486/.sorted.vcf.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite2364946359087766560.gtf
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite2364946359087766560.gtf/.part-00003.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite2364946359087766560.gtf/.part-00000.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite2364946359087766560.gtf/_SUCCESS
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite2364946359087766560.gtf/part-00003
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite2364946359087766560.gtf/part-00000
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite2364946359087766560.gtf/part-00002
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite2364946359087766560.gtf/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite2364946359087766560.gtf/.part-00002.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite2364946359087766560.gtf/part-00001
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite2364946359087766560.gtf/.part-00001.crc
/tmp/adamTestMvnhgcACDR/TempSuite5611027751170134096.adam
/tmp/adamTestMvnhgcACDR/TempSuite5611027751170134096.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite5611027751170134096.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite5611027751170134096.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite5611027751170134096.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/TempSuite5611027751170134096.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite5611027751170134096.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/TempSuite5611027751170134096.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite5611027751170134096.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite5611027751170134096.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite5611027751170134096.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite5611027751170134096.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite5611027751170134096.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite5611027751170134096.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite5611027751170134096.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite2051112830893660785.narrowPeak
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite2051112830893660785.narrowPeak/.part-00003.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite2051112830893660785.narrowPeak/.part-00000.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite2051112830893660785.narrowPeak/_SUCCESS
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite2051112830893660785.narrowPeak/part-00003
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite2051112830893660785.narrowPeak/part-00000
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite2051112830893660785.narrowPeak/part-00002
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite2051112830893660785.narrowPeak/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite2051112830893660785.narrowPeak/.part-00002.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite2051112830893660785.narrowPeak/part-00001
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite2051112830893660785.narrowPeak/.part-00001.crc
/tmp/adamTestMvnhgcACDR/TempSuite6827886445101296297
/tmp/adamTestMvnhgcACDR/TempSuite5882395932531772734.adam
/tmp/adamTestMvnhgcACDR/TempSuite5882395932531772734.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite5882395932531772734.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite5882395932531772734.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite5882395932531772734.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/TempSuite5882395932531772734.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite5882395932531772734.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/TempSuite5882395932531772734.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite5882395932531772734.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite5882395932531772734.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite5882395932531772734.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite5882395932531772734.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite5882395932531772734.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite5882395932531772734.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite5882395932531772734.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/6750109110248424717
/tmp/adamTestMvnhgcACDR/6750109110248424717/..gff3.crc
/tmp/adamTestMvnhgcACDR/6750109110248424717/.gff3
/tmp/adamTestMvnhgcACDR/TempSuite1141440014019556715.bed
/tmp/adamTestMvnhgcACDR/TempSuite1141440014019556715.bed/.part-00000.crc
/tmp/adamTestMvnhgcACDR/TempSuite1141440014019556715.bed/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite1141440014019556715.bed/part-00000
/tmp/adamTestMvnhgcACDR/TempSuite1141440014019556715.bed/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite526219064517248116
/tmp/adamTestMvnhgcACDR/TempSuite7068581427797648415
/tmp/adamTestMvnhgcACDR/TempSuite5389842522793026124.bam
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite7490173757516647254.bed
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite7490173757516647254.bed/.part-00003.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite7490173757516647254.bed/.part-00000.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite7490173757516647254.bed/_SUCCESS
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite7490173757516647254.bed/part-00003
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite7490173757516647254.bed/part-00000
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite7490173757516647254.bed/part-00002
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite7490173757516647254.bed/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite7490173757516647254.bed/.part-00002.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite7490173757516647254.bed/part-00001
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite7490173757516647254.bed/.part-00001.crc
/tmp/adamTestMvnhgcACDR/TempSuite8521942803833492883
/tmp/adamTestMvnhgcACDR/TempSuite8735636120268682064
/tmp/adamTestMvnhgcACDR/TempSuite6193442401987748576.adam
/tmp/adamTestMvnhgcACDR/TempSuite6193442401987748576.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite6193442401987748576.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite6193442401987748576.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite6193442401987748576.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite6193442401987748576.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite6193442401987748576.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/TempSuite6193442401987748576.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite6193442401987748576.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/TempSuite6193442401987748576.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite6193442401987748576.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite6193442401987748576.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite6193442401987748576.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite6193442401987748576.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite6193442401987748576.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite6193442401987748576.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite6193442401987748576.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite6193442401987748576.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite6193442401987748576.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite6193442401987748576.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite6193442401987748576.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite7043422580203182724.adam
/tmp/adamTestMvnhgcACDR/TempSuite7043422580203182724.adam/part-00000-0fc82496-4031-42f2-afa8-d32684bd51a7-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite7043422580203182724.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite7043422580203182724.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite7043422580203182724.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/TempSuite7043422580203182724.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/TempSuite7043422580203182724.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite7043422580203182724.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite7043422580203182724.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite7043422580203182724.adam/.part-00000-0fc82496-4031-42f2-afa8-d32684bd51a7-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite7043422580203182724.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite5586833837089755598.bed
/tmp/adamTestMvnhgcACDR/TempSuite5586833837089755598.bed/.part-00000.crc
/tmp/adamTestMvnhgcACDR/TempSuite5586833837089755598.bed/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite5586833837089755598.bed/part-00000
/tmp/adamTestMvnhgcACDR/TempSuite5586833837089755598.bed/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4635387540668633945
/tmp/adamTestMvnhgcACDR/TempSuite9112143629509839626.adam
/tmp/adamTestMvnhgcACDR/TempSuite9112143629509839626.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite9112143629509839626.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite9112143629509839626.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite9112143629509839626.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite9112143629509839626.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite9112143629509839626.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite9112143629509839626.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite9112143629509839626.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite9112143629509839626.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite9112143629509839626.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite9112143629509839626.adam/._header.crc
/tmp/adamTestMvnhgcACDR/TempSuite9112143629509839626.adam/_header
/tmp/adamTestMvnhgcACDR/TempSuite5515067291698000329fragments.adam
/tmp/adamTestMvnhgcACDR/TempSuite5515067291698000329fragments.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite5515067291698000329fragments.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite5515067291698000329fragments.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite5515067291698000329fragments.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/TempSuite5515067291698000329fragments.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite5515067291698000329fragments.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/TempSuite5515067291698000329fragments.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite5515067291698000329fragments.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite5515067291698000329fragments.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite5515067291698000329fragments.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite5515067291698000329fragments.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite5515067291698000329fragments.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite5515067291698000329fragments.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite5515067291698000329fragments.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite6856782070898169762.fq
/tmp/adamTestMvnhgcACDR/TempSuite6856782070898169762.fq/.part-00000.crc
/tmp/adamTestMvnhgcACDR/TempSuite6856782070898169762.fq/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite6856782070898169762.fq/part-00000
/tmp/adamTestMvnhgcACDR/TempSuite6856782070898169762.fq/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/5144704665661795006
/tmp/adamTestMvnhgcACDR/5144704665661795006/binned.adam
/tmp/adamTestMvnhgcACDR/5144704665661795006/binned.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/5144704665661795006/binned.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/5144704665661795006/binned.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/5144704665661795006/binned.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/5144704665661795006/binned.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/5144704665661795006/binned.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/5144704665661795006/binned.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/5144704665661795006/binned.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/5144704665661795006/binned.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/5144704665661795006/binned.adam/_references.avro
/tmp/adamTestMvnhgcACDR/5144704665661795006/binned.adam/_metadata
/tmp/adamTestMvnhgcACDR/5144704665661795006/binned.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/5144704665661795006/binned.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/5144704665661795006/binned.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite8524216340506807810.bed
/tmp/adamTestMvnhgcACDR/TempSuite8524216340506807810.bed/.part-00000.crc
/tmp/adamTestMvnhgcACDR/TempSuite8524216340506807810.bed/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite8524216340506807810.bed/part-00000
/tmp/adamTestMvnhgcACDR/TempSuite8524216340506807810.bed/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite6382708081752578812.2.adam
/tmp/adamTestMvnhgcACDR/TempSuite6382708081752578812.2.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite6382708081752578812.2.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite6382708081752578812.2.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite6382708081752578812.2.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/TempSuite6382708081752578812.2.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite6382708081752578812.2.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/TempSuite6382708081752578812.2.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite6382708081752578812.2.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite6382708081752578812.2.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite6382708081752578812.2.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite6382708081752578812.2.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite6382708081752578812.2.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite6382708081752578812.2.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite6382708081752578812.2.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite4000434812497837995
/tmp/adamTestMvnhgcACDR/1155899100008411765
/tmp/adamTestMvnhgcACDR/1155899100008411765/.sorted-variants.lex.vcf.crc
/tmp/adamTestMvnhgcACDR/1155899100008411765/sorted-variants.lex.vcf
/tmp/adamTestMvnhgcACDR/TempSuite3663991568626411795.fa
/tmp/adamTestMvnhgcACDR/TempSuite3663991568626411795.fa/.part-00000.crc
/tmp/adamTestMvnhgcACDR/TempSuite3663991568626411795.fa/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite3663991568626411795.fa/part-00000
/tmp/adamTestMvnhgcACDR/TempSuite3663991568626411795.fa/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite3131359299200699307
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4323198831958602096.interval_list
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4323198831958602096.interval_list/.part-00003.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4323198831958602096.interval_list/.part-00000.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4323198831958602096.interval_list/_SUCCESS
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4323198831958602096.interval_list/part-00003
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4323198831958602096.interval_list/part-00000
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4323198831958602096.interval_list/part-00002
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4323198831958602096.interval_list/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4323198831958602096.interval_list/.part-00002.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4323198831958602096.interval_list/part-00001
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite4323198831958602096.interval_list/.part-00001.crc
/tmp/adamTestMvnhgcACDR/8682013328286493956
/tmp/adamTestMvnhgcACDR/8682013328286493956/ordered.sam
/tmp/adamTestMvnhgcACDR/8682013328286493956/.ordered.sam.crc
/tmp/adamTestMvnhgcACDR/TempSuite5264340226883600719.adam
/tmp/adamTestMvnhgcACDR/TempSuite5264340226883600719.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite5264340226883600719.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite5264340226883600719.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite5264340226883600719.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite5264340226883600719.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite5264340226883600719.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite5264340226883600719.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite5264340226883600719.adam/_samples.avro
/tmp/adamTestMvnhgcACDR/TempSuite5264340226883600719.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite5264340226883600719.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite5264340226883600719.adam/._samples.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite5264340226883600719.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite5264340226883600719.adam/._header.crc
/tmp/adamTestMvnhgcACDR/TempSuite5264340226883600719.adam/_header
/tmp/adamTestMvnhgcACDR/reads124016542128095772359
/tmp/adamTestMvnhgcACDR/reads124016542128095772359/reads12.sam
/tmp/adamTestMvnhgcACDR/reads124016542128095772359/reads12.sam/part-r-00000.sam
/tmp/adamTestMvnhgcACDR/reads124016542128095772359/reads12.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnhgcACDR/reads124016542128095772359/reads12.sam/_SUCCESS
/tmp/adamTestMvnhgcACDR/reads124016542128095772359/reads12.sam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite1396125115174117491.sam
/tmp/adamTestMvnhgcACDR/TempSuite1396125115174117491.sam/part-r-00000.sam
/tmp/adamTestMvnhgcACDR/TempSuite1396125115174117491.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnhgcACDR/TempSuite1396125115174117491.sam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite1396125115174117491.sam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite5882395932531772734
/tmp/adamTestMvnhgcACDR/TempSuite1890715222408166970
/tmp/adamTestMvnhgcACDR/TempSuite4416476030460886490.adam
/tmp/adamTestMvnhgcACDR/TempSuite4416476030460886490.adam/part-00002-b0cc1ad1-b373-4941-8484-66f2812afad6-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite4416476030460886490.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite4416476030460886490.adam/part-00001-b0cc1ad1-b373-4941-8484-66f2812afad6-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite4416476030460886490.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite4416476030460886490.adam/.part-00001-b0cc1ad1-b373-4941-8484-66f2812afad6-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite4416476030460886490.adam/.part-00000-b0cc1ad1-b373-4941-8484-66f2812afad6-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite4416476030460886490.adam/part-00000-b0cc1ad1-b373-4941-8484-66f2812afad6-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite4416476030460886490.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite4416476030460886490.adam/_samples.avro
/tmp/adamTestMvnhgcACDR/TempSuite4416476030460886490.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite4416476030460886490.adam/.part-00002-b0cc1ad1-b373-4941-8484-66f2812afad6-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite4416476030460886490.adam/._samples.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite4416476030460886490.adam/._header.crc
/tmp/adamTestMvnhgcACDR/TempSuite4416476030460886490.adam/_header
/tmp/adamTestMvnhgcACDR/TempSuite1024983857231220975
/tmp/adamTestMvnhgcACDR/bqsr1.sam2068045932779379451.sam
/tmp/adamTestMvnhgcACDR/TempSuite3223601362522998752
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3011594730700090729.bed
/tmp/adamTestMvnhgcACDR/TempSuite4087066686689061741
/tmp/adamTestMvnhgcACDR/TempSuite3097640698481522470_1.fq
/tmp/adamTestMvnhgcACDR/TempSuite3097640698481522470_1.fq/.part-00000.crc
/tmp/adamTestMvnhgcACDR/TempSuite3097640698481522470_1.fq/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite3097640698481522470_1.fq/part-00000
/tmp/adamTestMvnhgcACDR/TempSuite3097640698481522470_1.fq/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/7607711867764344816
/tmp/adamTestMvnhgcACDR/7607711867764344816/binned.adam
/tmp/adamTestMvnhgcACDR/7607711867764344816/binned.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/7607711867764344816/binned.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/7607711867764344816/binned.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/7607711867764344816/binned.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/7607711867764344816/binned.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/7607711867764344816/binned.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/7607711867764344816/binned.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/7607711867764344816/binned.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/7607711867764344816/binned.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/7607711867764344816/binned.adam/_references.avro
/tmp/adamTestMvnhgcACDR/7607711867764344816/binned.adam/_metadata
/tmp/adamTestMvnhgcACDR/7607711867764344816/binned.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/7607711867764344816/binned.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/7607711867764344816/binned.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/javaAC1192966920827913916
/tmp/adamTestMvnhgcACDR/javaAC1192966920827913916/testRdd.fragment.adam
/tmp/adamTestMvnhgcACDR/javaAC1192966920827913916/testRdd.fragment.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/javaAC1192966920827913916/testRdd.fragment.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/javaAC1192966920827913916/testRdd.fragment.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/javaAC1192966920827913916/testRdd.fragment.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/javaAC1192966920827913916/testRdd.fragment.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/javaAC1192966920827913916/testRdd.fragment.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/javaAC1192966920827913916/testRdd.fragment.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/javaAC1192966920827913916/testRdd.fragment.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/javaAC1192966920827913916/testRdd.fragment.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/javaAC1192966920827913916/testRdd.fragment.adam/_references.avro
/tmp/adamTestMvnhgcACDR/javaAC1192966920827913916/testRdd.fragment.adam/_metadata
/tmp/adamTestMvnhgcACDR/javaAC1192966920827913916/testRdd.fragment.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/javaAC1192966920827913916/testRdd.fragment.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/javaAC1192966920827913916/testRdd.fragment.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite369598797078971505
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite1716864843835969160
/tmp/adamTestMvnhgcACDR/4944551199657425444
/tmp/adamTestMvnhgcACDR/4944551199657425444/unordered.adam
/tmp/adamTestMvnhgcACDR/4944551199657425444/unordered.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/4944551199657425444/unordered.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/4944551199657425444/unordered.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/4944551199657425444/unordered.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/4944551199657425444/unordered.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/4944551199657425444/unordered.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/4944551199657425444/unordered.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/4944551199657425444/unordered.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/4944551199657425444/unordered.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/4944551199657425444/unordered.adam/_references.avro
/tmp/adamTestMvnhgcACDR/4944551199657425444/unordered.adam/_metadata
/tmp/adamTestMvnhgcACDR/4944551199657425444/unordered.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/4944551199657425444/unordered.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/4944551199657425444/unordered.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite3874538613112350935
/tmp/adamTestMvnhgcACDR/TempSuite5515067291698000329
/tmp/adamTestMvnhgcACDR/TempSuite4080964054207122683
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite8551916823004066557
/tmp/adamTestMvnhgcACDR/4221269758319005220
/tmp/adamTestMvnhgcACDR/4221269758319005220/genotypes.adam
/tmp/adamTestMvnhgcACDR/4221269758319005220/genotypes.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/4221269758319005220/genotypes.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/4221269758319005220/genotypes.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/4221269758319005220/genotypes.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/4221269758319005220/genotypes.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/4221269758319005220/genotypes.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/4221269758319005220/genotypes.adam/_references.avro
/tmp/adamTestMvnhgcACDR/4221269758319005220/genotypes.adam/_samples.avro
/tmp/adamTestMvnhgcACDR/4221269758319005220/genotypes.adam/_metadata
/tmp/adamTestMvnhgcACDR/4221269758319005220/genotypes.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/4221269758319005220/genotypes.adam/._samples.avro.crc
/tmp/adamTestMvnhgcACDR/4221269758319005220/genotypes.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/4221269758319005220/genotypes.adam/._header.crc
/tmp/adamTestMvnhgcACDR/4221269758319005220/genotypes.adam/_header
/tmp/adamTestMvnhgcACDR/TempSuite2376599963753425066_2.fq
/tmp/adamTestMvnhgcACDR/TempSuite2376599963753425066_2.fq/.part-00000.crc
/tmp/adamTestMvnhgcACDR/TempSuite2376599963753425066_2.fq/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite2376599963753425066_2.fq/part-00000
/tmp/adamTestMvnhgcACDR/TempSuite2376599963753425066_2.fq/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite5234085256487904293
/tmp/adamTestMvnhgcACDR/TempSuite6793875387143215679.adam
/tmp/adamTestMvnhgcACDR/TempSuite6793875387143215679.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite6793875387143215679.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite6793875387143215679.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite6793875387143215679.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite6793875387143215679.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite6793875387143215679.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite6793875387143215679.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite6793875387143215679.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite6793875387143215679.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite6793875387143215679.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite6793875387143215679.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite6793875387143215679.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite6793875387143215679.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite6793875387143215679.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite6793875387143215679.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite6793875387143215679.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite6793875387143215679.adam/._header.crc
/tmp/adamTestMvnhgcACDR/TempSuite6793875387143215679.adam/_header
/tmp/adamTestMvnhgcACDR/TempSuite3723511810053842350.adam
/tmp/adamTestMvnhgcACDR/TempSuite3723511810053842350.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite3723511810053842350.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite3723511810053842350.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/TempSuite3723511810053842350.adam/part-00001-e976e964-53e4-4942-9711-fe7af147dabb-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite3723511810053842350.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/TempSuite3723511810053842350.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite3723511810053842350.adam/part-00000-e976e964-53e4-4942-9711-fe7af147dabb-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite3723511810053842350.adam/.part-00002-e976e964-53e4-4942-9711-fe7af147dabb-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite3723511810053842350.adam/.part-00001-e976e964-53e4-4942-9711-fe7af147dabb-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite3723511810053842350.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite3723511810053842350.adam/part-00002-e976e964-53e4-4942-9711-fe7af147dabb-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite3723511810053842350.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite3723511810053842350.adam/.part-00000-e976e964-53e4-4942-9711-fe7af147dabb-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite3723511810053842350.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite5464466681814872881.adam
/tmp/adamTestMvnhgcACDR/TempSuite5464466681814872881.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite5464466681814872881.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite5464466681814872881.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite5464466681814872881.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite5464466681814872881.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite5464466681814872881.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite5464466681814872881.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite5464466681814872881.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite5464466681814872881.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite5464466681814872881.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite1405574496366726299
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite732764160450393098
/tmp/adamTestMvnhgcACDR/TempSuite9144609809950214873
/tmp/adamTestMvnhgcACDR/TempSuite9135693613021339692
/tmp/adamTestMvnhgcACDR/TempSuite1964664124463715682
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite8064089124253305405.gtf
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite8064089124253305405.gtf/.part-00003.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite8064089124253305405.gtf/.part-00000.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite8064089124253305405.gtf/_SUCCESS
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite8064089124253305405.gtf/part-00003
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite8064089124253305405.gtf/part-00000
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite8064089124253305405.gtf/part-00002
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite8064089124253305405.gtf/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite8064089124253305405.gtf/.part-00002.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite8064089124253305405.gtf/part-00001
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite8064089124253305405.gtf/.part-00001.crc
/tmp/adamTestMvnhgcACDR/8850705547622923994
/tmp/adamTestMvnhgcACDR/8850705547622923994/genotypes.nested-annotations.adam
/tmp/adamTestMvnhgcACDR/8850705547622923994/genotypes.nested-annotations.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/8850705547622923994/genotypes.nested-annotations.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/8850705547622923994/genotypes.nested-annotations.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/8850705547622923994/genotypes.nested-annotations.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/8850705547622923994/genotypes.nested-annotations.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/8850705547622923994/genotypes.nested-annotations.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/8850705547622923994/genotypes.nested-annotations.adam/_references.avro
/tmp/adamTestMvnhgcACDR/8850705547622923994/genotypes.nested-annotations.adam/_samples.avro
/tmp/adamTestMvnhgcACDR/8850705547622923994/genotypes.nested-annotations.adam/_metadata
/tmp/adamTestMvnhgcACDR/8850705547622923994/genotypes.nested-annotations.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/8850705547622923994/genotypes.nested-annotations.adam/._samples.avro.crc
/tmp/adamTestMvnhgcACDR/8850705547622923994/genotypes.nested-annotations.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/8850705547622923994/genotypes.nested-annotations.adam/._header.crc
/tmp/adamTestMvnhgcACDR/8850705547622923994/genotypes.nested-annotations.adam/_header
/tmp/adamTestMvnhgcACDR/TempSuite4040016222057868277
/tmp/adamTestMvnhgcACDR/TempSuite5440723441453299818.fa
/tmp/adamTestMvnhgcACDR/TempSuite5440723441453299818.fa/.part-00000.crc
/tmp/adamTestMvnhgcACDR/TempSuite5440723441453299818.fa/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite5440723441453299818.fa/part-00000
/tmp/adamTestMvnhgcACDR/TempSuite5440723441453299818.fa/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite6382708081752578812
/tmp/adamTestMvnhgcACDR/TempSuite1733669334062891926.bed
/tmp/adamTestMvnhgcACDR/TempSuite1733669334062891926.bed/.part-00000.crc
/tmp/adamTestMvnhgcACDR/TempSuite1733669334062891926.bed/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite1733669334062891926.bed/part-00000
/tmp/adamTestMvnhgcACDR/TempSuite1733669334062891926.bed/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite4417725976425954732
/tmp/adamTestMvnhgcACDR/TempSuite7153843475482247894.adam
/tmp/adamTestMvnhgcACDR/TempSuite7153843475482247894.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite7153843475482247894.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite7153843475482247894.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite7153843475482247894.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite7153843475482247894.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite7153843475482247894.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite7153843475482247894.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite7153843475482247894.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite7153843475482247894.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite7153843475482247894.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite7153843475482247894.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite7153843475482247894.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite7153843475482247894.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite7153843475482247894.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite7153843475482247894.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite7153843475482247894.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite571316281174582336.interval_list
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite571316281174582336.interval_list/.part-00003.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite571316281174582336.interval_list/.part-00000.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite571316281174582336.interval_list/_SUCCESS
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite571316281174582336.interval_list/part-00003
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite571316281174582336.interval_list/part-00000
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite571316281174582336.interval_list/part-00002
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite571316281174582336.interval_list/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite571316281174582336.interval_list/.part-00002.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite571316281174582336.interval_list/part-00001
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite571316281174582336.interval_list/.part-00001.crc
/tmp/adamTestMvnhgcACDR/TempSuite3086599151240587060.fa
/tmp/adamTestMvnhgcACDR/TempSuite3086599151240587060.fa/.part-00000.crc
/tmp/adamTestMvnhgcACDR/TempSuite3086599151240587060.fa/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite3086599151240587060.fa/part-00000
/tmp/adamTestMvnhgcACDR/TempSuite3086599151240587060.fa/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite7205198229845846681.adam
/tmp/adamTestMvnhgcACDR/TempSuite7205198229845846681.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite7205198229845846681.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite7205198229845846681.adam/_partitionedByStartPos
/tmp/adamTestMvnhgcACDR/TempSuite7205198229845846681.adam/referenceName=13
/tmp/adamTestMvnhgcACDR/TempSuite7205198229845846681.adam/referenceName=13/positionBin=0
/tmp/adamTestMvnhgcACDR/TempSuite7205198229845846681.adam/referenceName=13/positionBin=0/.part-00000-9ad8611f-7e92-4151-aeeb-d084d520f769.c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite7205198229845846681.adam/referenceName=13/positionBin=0/part-00000-9ad8611f-7e92-4151-aeeb-d084d520f769.c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite7205198229845846681.adam/referenceName=1
/tmp/adamTestMvnhgcACDR/TempSuite7205198229845846681.adam/referenceName=1/positionBin=0
/tmp/adamTestMvnhgcACDR/TempSuite7205198229845846681.adam/referenceName=1/positionBin=0/.part-00000-9ad8611f-7e92-4151-aeeb-d084d520f769.c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite7205198229845846681.adam/referenceName=1/positionBin=0/part-00000-9ad8611f-7e92-4151-aeeb-d084d520f769.c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite7205198229845846681.adam/._partitionedByStartPos.crc
/tmp/adamTestMvnhgcACDR/TempSuite7205198229845846681.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite7205198229845846681.adam/_samples.avro
/tmp/adamTestMvnhgcACDR/TempSuite7205198229845846681.adam/referenceName=2
/tmp/adamTestMvnhgcACDR/TempSuite7205198229845846681.adam/referenceName=2/positionBin=0
/tmp/adamTestMvnhgcACDR/TempSuite7205198229845846681.adam/referenceName=2/positionBin=0/.part-00000-9ad8611f-7e92-4151-aeeb-d084d520f769.c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite7205198229845846681.adam/referenceName=2/positionBin=0/part-00000-9ad8611f-7e92-4151-aeeb-d084d520f769.c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite7205198229845846681.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite7205198229845846681.adam/._samples.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite7205198229845846681.adam/._header.crc
/tmp/adamTestMvnhgcACDR/TempSuite7205198229845846681.adam/_header
/tmp/adamTestMvnhgcACDR/TempSuite3555717120533896886
/tmp/adamTestMvnhgcACDR/SequenceDatasetSuite2713322777816467032.fasta
/tmp/adamTestMvnhgcACDR/.SequenceDatasetSuite7067168731893543579.fasta.crc
/tmp/adamTestMvnhgcACDR/TempSuite9103683648736879934
/tmp/adamTestMvnhgcACDR/TempSuite3292616670353709017
/tmp/adamTestMvnhgcACDR/5409908334630967479
/tmp/adamTestMvnhgcACDR/5409908334630967479/sorted.vcf
/tmp/adamTestMvnhgcACDR/5409908334630967479/.sorted.vcf.crc
/tmp/adamTestMvnhgcACDR/TempSuite5094789371900438057.bam
/tmp/adamTestMvnhgcACDR/TempSuite5094789371900438057.bam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite5094789371900438057.bam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite5094789371900438057.bam/.part-r-00000.bam.crc
/tmp/adamTestMvnhgcACDR/TempSuite5094789371900438057.bam/part-r-00000.bam
/tmp/adamTestMvnhgcACDR/TempSuite2138060970104579040
/tmp/adamTestMvnhgcACDR/TempSuite3320597633892843138.adam
/tmp/adamTestMvnhgcACDR/TempSuite3320597633892843138.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite3320597633892843138.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite3320597633892843138.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite3320597633892843138.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite3320597633892843138.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite3320597633892843138.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/TempSuite3320597633892843138.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite3320597633892843138.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/TempSuite3320597633892843138.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite3320597633892843138.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite3320597633892843138.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite3320597633892843138.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite3320597633892843138.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite3320597633892843138.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite3320597633892843138.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite3320597633892843138.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite3320597633892843138.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite3320597633892843138.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite3320597633892843138.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite3320597633892843138.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite7672199439707632496
/tmp/adamTestMvnhgcACDR/TempSuite6784450754600280385.adam
/tmp/adamTestMvnhgcACDR/TempSuite6784450754600280385.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite6784450754600280385.adam/part-00000-65b8d19e-bd9a-448a-874b-2aac3f2338f8-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite6784450754600280385.adam/.part-00000-65b8d19e-bd9a-448a-874b-2aac3f2338f8-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite6784450754600280385.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite6784450754600280385.adam/.part-00003-65b8d19e-bd9a-448a-874b-2aac3f2338f8-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite6784450754600280385.adam/part-00005-65b8d19e-bd9a-448a-874b-2aac3f2338f8-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite6784450754600280385.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite6784450754600280385.adam/_samples.avro
/tmp/adamTestMvnhgcACDR/TempSuite6784450754600280385.adam/part-00003-65b8d19e-bd9a-448a-874b-2aac3f2338f8-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite6784450754600280385.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite6784450754600280385.adam/.part-00005-65b8d19e-bd9a-448a-874b-2aac3f2338f8-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite6784450754600280385.adam/._samples.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite2766075328621090401
/tmp/adamTestMvnhgcACDR/TempSuite3985550610983559529
/tmp/adamTestMvnhgcACDR/TempSuite6162417547147425301.adam
/tmp/adamTestMvnhgcACDR/TempSuite6162417547147425301.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite6162417547147425301.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite6162417547147425301.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/TempSuite6162417547147425301.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/TempSuite6162417547147425301.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite6162417547147425301.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite6162417547147425301.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite6162417547147425301.adam/.part-00000-32b59c01-de35-4dfe-a1cf-01db294e2d78-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite6162417547147425301.adam/part-00000-32b59c01-de35-4dfe-a1cf-01db294e2d78-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite6162417547147425301.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/1575235474180-0
/tmp/adamTestMvnhgcACDR/1575235474180-0/.test.gvcf.vcf.crc
/tmp/adamTestMvnhgcACDR/1575235474180-0/test.gvcf.vcf
/tmp/adamTestMvnhgcACDR/TempSuite6783813765895138323.adam
/tmp/adamTestMvnhgcACDR/TempSuite6783813765895138323.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite6783813765895138323.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite6783813765895138323.adam/part-00000-8abfe87f-ae4c-4008-80ba-a3801be1b1b4-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite6783813765895138323.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite6783813765895138323.adam/_samples.avro
/tmp/adamTestMvnhgcACDR/TempSuite6783813765895138323.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite6783813765895138323.adam/._samples.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite6783813765895138323.adam/._header.crc
/tmp/adamTestMvnhgcACDR/TempSuite6783813765895138323.adam/_header
/tmp/adamTestMvnhgcACDR/TempSuite6783813765895138323.adam/.part-00000-8abfe87f-ae4c-4008-80ba-a3801be1b1b4-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/6144121882217097020
/tmp/adamTestMvnhgcACDR/6144121882217097020/unordered.sam
/tmp/adamTestMvnhgcACDR/6144121882217097020/.unordered.sam.crc
/tmp/adamTestMvnhgcACDR/TempSuite8368928984751165833
/tmp/adamTestMvnhgcACDR/TempSuite7683387226467173536
/tmp/adamTestMvnhgcACDR/TempSuite3542152656175041241
/tmp/adamTestMvnhgcACDR/TempSuite6810036912705797624.sam
/tmp/adamTestMvnhgcACDR/TempSuite6810036912705797624.sam/part-r-00000.sam
/tmp/adamTestMvnhgcACDR/TempSuite6810036912705797624.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnhgcACDR/TempSuite6810036912705797624.sam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite6810036912705797624.sam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite4875412530691388132.bed
/tmp/adamTestMvnhgcACDR/TempSuite4875412530691388132.bed/.part-00000.crc
/tmp/adamTestMvnhgcACDR/TempSuite4875412530691388132.bed/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite4875412530691388132.bed/part-00000
/tmp/adamTestMvnhgcACDR/TempSuite4875412530691388132.bed/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite2533057382558254605
/tmp/adamTestMvnhgcACDR/TempSuite5304471652523128413.adam
/tmp/adamTestMvnhgcACDR/TempSuite5304471652523128413.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite5304471652523128413.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite5304471652523128413.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite5304471652523128413.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite5304471652523128413.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite5304471652523128413.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite5304471652523128413.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite5304471652523128413.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite5304471652523128413.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite5304471652523128413.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite5304471652523128413.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite5304471652523128413.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite5304471652523128413.adam/_samples.avro
/tmp/adamTestMvnhgcACDR/TempSuite5304471652523128413.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite5304471652523128413.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite5304471652523128413.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite5304471652523128413.adam/._samples.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite5304471652523128413.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite1922690979306306925.narrowPeak
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite1922690979306306925.narrowPeak/.part-00003.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite1922690979306306925.narrowPeak/.part-00000.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite1922690979306306925.narrowPeak/_SUCCESS
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite1922690979306306925.narrowPeak/part-00003
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite1922690979306306925.narrowPeak/part-00000
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite1922690979306306925.narrowPeak/part-00002
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite1922690979306306925.narrowPeak/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite1922690979306306925.narrowPeak/.part-00002.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite1922690979306306925.narrowPeak/part-00001
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite1922690979306306925.narrowPeak/.part-00001.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite6028327997089820250.interval_list
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite6028327997089820250.interval_list/.part-00003.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite6028327997089820250.interval_list/.part-00000.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite6028327997089820250.interval_list/_SUCCESS
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite6028327997089820250.interval_list/part-00003
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite6028327997089820250.interval_list/part-00000
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite6028327997089820250.interval_list/part-00002
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite6028327997089820250.interval_list/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite6028327997089820250.interval_list/.part-00002.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite6028327997089820250.interval_list/part-00001
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite6028327997089820250.interval_list/.part-00001.crc
/tmp/adamTestMvnhgcACDR/TempSuite6408483519380462492.adam
/tmp/adamTestMvnhgcACDR/TempSuite6408483519380462492.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite6408483519380462492.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite6408483519380462492.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite6408483519380462492.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite6408483519380462492.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite6408483519380462492.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/TempSuite6408483519380462492.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite6408483519380462492.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/TempSuite6408483519380462492.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite6408483519380462492.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite6408483519380462492.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite6408483519380462492.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite6408483519380462492.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite6408483519380462492.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite6408483519380462492.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite6408483519380462492.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite6408483519380462492.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite6408483519380462492.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite6408483519380462492.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite6408483519380462492.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite2315706635304678738.adam
/tmp/adamTestMvnhgcACDR/TempSuite2315706635304678738.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite2315706635304678738.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite2315706635304678738.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite2315706635304678738.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite2315706635304678738.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite2315706635304678738.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite2315706635304678738.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite2315706635304678738.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite2315706635304678738.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite2315706635304678738.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite2315706635304678738.adam/._header.crc
/tmp/adamTestMvnhgcACDR/TempSuite2315706635304678738.adam/_header
/tmp/adamTestMvnhgcACDR/TempSuite6015015878644530102
/tmp/adamTestMvnhgcACDR/.FeatureDatasetFunctionsSuite789916828206143469.bed.crc
/tmp/adamTestMvnhgcACDR/TempSuite2315706635304678738
/tmp/adamTestMvnhgcACDR/TempSuite1382587969092533721.adam
/tmp/adamTestMvnhgcACDR/TempSuite1382587969092533721.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite1382587969092533721.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite1382587969092533721.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite1382587969092533721.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/TempSuite1382587969092533721.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite1382587969092533721.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/TempSuite1382587969092533721.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite1382587969092533721.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite1382587969092533721.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite1382587969092533721.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite1382587969092533721.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite1382587969092533721.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite1382587969092533721.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite1382587969092533721.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3693480118681600303.bed
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3693480118681600303.bed/.part-00003.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3693480118681600303.bed/.part-00000.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3693480118681600303.bed/_SUCCESS
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3693480118681600303.bed/part-00003
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3693480118681600303.bed/part-00000
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3693480118681600303.bed/part-00002
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3693480118681600303.bed/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3693480118681600303.bed/.part-00002.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3693480118681600303.bed/part-00001
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite3693480118681600303.bed/.part-00001.crc
/tmp/adamTestMvnhgcACDR/108542243340615163
/tmp/adamTestMvnhgcACDR/108542243340615163/coverage.adam
/tmp/adamTestMvnhgcACDR/108542243340615163/coverage.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/108542243340615163/coverage.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/108542243340615163/coverage.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/108542243340615163/coverage.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/108542243340615163/coverage.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/108542243340615163/coverage.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/108542243340615163/coverage.adam/_references.avro
/tmp/adamTestMvnhgcACDR/108542243340615163/coverage.adam/_samples.avro
/tmp/adamTestMvnhgcACDR/108542243340615163/coverage.adam/_metadata
/tmp/adamTestMvnhgcACDR/108542243340615163/coverage.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/108542243340615163/coverage.adam/._samples.avro.crc
/tmp/adamTestMvnhgcACDR/108542243340615163/coverage.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite2404215359736815121_2.fq
/tmp/adamTestMvnhgcACDR/TempSuite2404215359736815121_2.fq/.part-00000.crc
/tmp/adamTestMvnhgcACDR/TempSuite2404215359736815121_2.fq/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite2404215359736815121_2.fq/part-00000
/tmp/adamTestMvnhgcACDR/TempSuite2404215359736815121_2.fq/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite3494609695554546113.adam
/tmp/adamTestMvnhgcACDR/TempSuite3494609695554546113.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite3494609695554546113.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite3494609695554546113.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite3494609695554546113.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite3494609695554546113.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite3494609695554546113.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite3494609695554546113.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite3494609695554546113.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite3494609695554546113.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite3494609695554546113.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite3494609695554546113.adam/._header.crc
/tmp/adamTestMvnhgcACDR/TempSuite3494609695554546113.adam/_header
/tmp/adamTestMvnhgcACDR/bqsr17693515271571808709
/tmp/adamTestMvnhgcACDR/bqsr17693515271571808709/bqsr1.bam
/tmp/adamTestMvnhgcACDR/bqsr17693515271571808709/.bqsr1.bam.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite1716864843835969160.narrowPeak
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite1716864843835969160.narrowPeak/.part-00003.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite1716864843835969160.narrowPeak/.part-00000.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite1716864843835969160.narrowPeak/_SUCCESS
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite1716864843835969160.narrowPeak/part-00003
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite1716864843835969160.narrowPeak/part-00000
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite1716864843835969160.narrowPeak/part-00002
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite1716864843835969160.narrowPeak/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite1716864843835969160.narrowPeak/.part-00002.crc
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite1716864843835969160.narrowPeak/part-00001
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite1716864843835969160.narrowPeak/.part-00001.crc
/tmp/adamTestMvnhgcACDR/TempSuite5002432711254051866
/tmp/adamTestMvnhgcACDR/unordered.sam5170965228180312011.sam
/tmp/adamTestMvnhgcACDR/TempSuite3221312276751774682.adam
/tmp/adamTestMvnhgcACDR/TempSuite3221312276751774682.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite3221312276751774682.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite3221312276751774682.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite3221312276751774682.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite3221312276751774682.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite3221312276751774682.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite3221312276751774682.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite3221312276751774682.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite3221312276751774682.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite3221312276751774682.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite3221312276751774682.adam/._header.crc
/tmp/adamTestMvnhgcACDR/TempSuite3221312276751774682.adam/_header
/tmp/adamTestMvnhgcACDR/TempSuite1733096541617878100.fq
/tmp/adamTestMvnhgcACDR/TempSuite1733096541617878100.fq/.part-00000.crc
/tmp/adamTestMvnhgcACDR/TempSuite1733096541617878100.fq/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite1733096541617878100.fq/part-00000
/tmp/adamTestMvnhgcACDR/TempSuite1733096541617878100.fq/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite1135703221313312449
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite5807430225199591214
/tmp/adamTestMvnhgcACDR/TempSuite4925139971946310260.adam
/tmp/adamTestMvnhgcACDR/TempSuite4925139971946310260.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite4925139971946310260.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite4925139971946310260.adam/.part-00000-7ad16b7f-e98d-4a56-a435-380d24665b69-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite4925139971946310260.adam/part-00000-7ad16b7f-e98d-4a56-a435-380d24665b69-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite4925139971946310260.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite4925139971946310260.adam/_samples.avro
/tmp/adamTestMvnhgcACDR/TempSuite4925139971946310260.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite4925139971946310260.adam/._samples.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite4925139971946310260.adam/._header.crc
/tmp/adamTestMvnhgcACDR/TempSuite4925139971946310260.adam/_header
/tmp/adamTestMvnhgcACDR/TempSuite4991757415649569495.adam
/tmp/adamTestMvnhgcACDR/TempSuite4991757415649569495.adam/.part-00002-495f5d05-300c-4098-99ab-ceb8122e62d7-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite4991757415649569495.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite4991757415649569495.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite4991757415649569495.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/TempSuite4991757415649569495.adam/part-00000-495f5d05-300c-4098-99ab-ceb8122e62d7-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite4991757415649569495.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/TempSuite4991757415649569495.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite4991757415649569495.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite4991757415649569495.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite4991757415649569495.adam/part-00002-495f5d05-300c-4098-99ab-ceb8122e62d7-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite4991757415649569495.adam/.part-00001-495f5d05-300c-4098-99ab-ceb8122e62d7-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite4991757415649569495.adam/part-00001-495f5d05-300c-4098-99ab-ceb8122e62d7-c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite4991757415649569495.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite4991757415649569495.adam/.part-00000-495f5d05-300c-4098-99ab-ceb8122e62d7-c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/.FeatureDatasetFunctionsSuite607308140614335032.narrowPeak.crc
/tmp/adamTestMvnhgcACDR/TempSuite3153227853513089016.sam
/tmp/adamTestMvnhgcACDR/TempSuite3153227853513089016.sam/part-r-00000.sam
/tmp/adamTestMvnhgcACDR/TempSuite3153227853513089016.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnhgcACDR/TempSuite3153227853513089016.sam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite3153227853513089016.sam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/random.vcf4271037944621672740.vcf
/tmp/adamTestMvnhgcACDR/ReadDatasetSuite9032557451682247975
/tmp/adamTestMvnhgcACDR/TempSuite7197601055103756772
/tmp/adamTestMvnhgcACDR/TempSuite6263252893102435234.adam
/tmp/adamTestMvnhgcACDR/TempSuite6263252893102435234.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite6263252893102435234.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite6263252893102435234.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite6263252893102435234.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/TempSuite6263252893102435234.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite6263252893102435234.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/TempSuite6263252893102435234.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite6263252893102435234.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite6263252893102435234.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite6263252893102435234.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite6263252893102435234.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite6263252893102435234.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite6263252893102435234.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite6263252893102435234.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite2367593479042455698.adam
/tmp/adamTestMvnhgcACDR/TempSuite2367593479042455698.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite2367593479042455698.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite2367593479042455698.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite2367593479042455698.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite2367593479042455698.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite2367593479042455698.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite2367593479042455698.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite2367593479042455698.adam/_samples.avro
/tmp/adamTestMvnhgcACDR/TempSuite2367593479042455698.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite2367593479042455698.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite2367593479042455698.adam/._samples.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite2367593479042455698.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite2367593479042455698.adam/._header.crc
/tmp/adamTestMvnhgcACDR/TempSuite2367593479042455698.adam/_header
/tmp/adamTestMvnhgcACDR/unordered.sam7216528169622046973.sam
/tmp/adamTestMvnhgcACDR/TempSuite6225211075614094491.adam
/tmp/adamTestMvnhgcACDR/TempSuite6225211075614094491.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite6225211075614094491.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite6225211075614094491.adam/._processingSteps.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite6225211075614094491.adam/_readGroups.avro
/tmp/adamTestMvnhgcACDR/TempSuite6225211075614094491.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite6225211075614094491.adam/_processingSteps.avro
/tmp/adamTestMvnhgcACDR/TempSuite6225211075614094491.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite6225211075614094491.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite6225211075614094491.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite6225211075614094491.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite6225211075614094491.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite6225211075614094491.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite6225211075614094491.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite6225211075614094491.adam/._readGroups.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite1291137600047255870
/tmp/adamTestMvnhgcACDR/small.sam4965031428302838863.sam
/tmp/adamTestMvnhgcACDR/TempSuite6927413301585556365
/tmp/adamTestMvnhgcACDR/FeatureDatasetFunctionsSuite8072477112514950051
/tmp/adamTestMvnhgcACDR/6033849364207739712
/tmp/adamTestMvnhgcACDR/TempSuite4589478715525452190
/tmp/adamTestMvnhgcACDR/TempSuite2040007718553460281
/tmp/adamTestMvnhgcACDR/TempSuite9106275174781319494
/tmp/adamTestMvnhgcACDR/TempSuite5123190528797647369.adam
/tmp/adamTestMvnhgcACDR/TempSuite5123190528797647369.adam/_common_metadata
/tmp/adamTestMvnhgcACDR/TempSuite5123190528797647369.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite5123190528797647369.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite5123190528797647369.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite5123190528797647369.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite5123190528797647369.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite5123190528797647369.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite5123190528797647369.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite5123190528797647369.adam/._metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite5123190528797647369.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnhgcACDR/TempSuite5123190528797647369.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite5123190528797647369.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite5123190528797647369.adam/_samples.avro
/tmp/adamTestMvnhgcACDR/TempSuite5123190528797647369.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite5123190528797647369.adam/_metadata
/tmp/adamTestMvnhgcACDR/TempSuite5123190528797647369.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite5123190528797647369.adam/._samples.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite5123190528797647369.adam/._common_metadata.crc
/tmp/adamTestMvnhgcACDR/TempSuite5139552234028586606
/tmp/adamTestMvnhgcACDR/TempSuite8659998372925919615
/tmp/adamTestMvnhgcACDR/TempSuite5235612161877637570
/tmp/adamTestMvnhgcACDR/TempSuite6662127093409344815
/tmp/adamTestMvnhgcACDR/TempSuite4266153940999924447
/tmp/adamTestMvnhgcACDR/hg19.chrM.2bit8462251657761089516.chrM.2bit
/tmp/adamTestMvnhgcACDR/TempSuite452221969025311601
/tmp/adamTestMvnhgcACDR/TempSuite8115548309718430862.adam
/tmp/adamTestMvnhgcACDR/TempSuite8115548309718430862.adam/._references.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite8115548309718430862.adam/_SUCCESS
/tmp/adamTestMvnhgcACDR/TempSuite8115548309718430862.adam/_partitionedByStartPos
/tmp/adamTestMvnhgcACDR/TempSuite8115548309718430862.adam/referenceName=1
/tmp/adamTestMvnhgcACDR/TempSuite8115548309718430862.adam/referenceName=1/positionBin=0
/tmp/adamTestMvnhgcACDR/TempSuite8115548309718430862.adam/referenceName=1/positionBin=0/.part-00000-9a119773-784e-44c4-aa43-cb4c41b7ac0a.c000.snappy.parquet.crc
/tmp/adamTestMvnhgcACDR/TempSuite8115548309718430862.adam/referenceName=1/positionBin=0/part-00000-9a119773-784e-44c4-aa43-cb4c41b7ac0a.c000.snappy.parquet
/tmp/adamTestMvnhgcACDR/TempSuite8115548309718430862.adam/._partitionedByStartPos.crc
/tmp/adamTestMvnhgcACDR/TempSuite8115548309718430862.adam/_references.avro
/tmp/adamTestMvnhgcACDR/TempSuite8115548309718430862.adam/_samples.avro
/tmp/adamTestMvnhgcACDR/TempSuite8115548309718430862.adam/._SUCCESS.crc
/tmp/adamTestMvnhgcACDR/TempSuite8115548309718430862.adam/._samples.avro.crc
/tmp/adamTestMvnhgcACDR/TempSuite8115548309718430862.adam/._header.crc
/tmp/adamTestMvnhgcACDR/TempSuite8115548309718430862.adam/_header
/tmp/adamTestMvnhgcACDR/TempSuite7801777264983491193
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite3374512864520948187.fasta
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite3374512864520948187.fasta/.part-00003.crc
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite3374512864520948187.fasta/.part-00000.crc
/tmp/adamTestMvnhgcACDR/SliceDatasetSuite337451286452094818