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Uploading: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/avocado/avocado-cli_2.11/0.1.1-SNAPSHOT/avocado-cli_2.11-0.1.1-20200216.024811-876-javadoc.jar
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[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building avocado: distribution 0.1.1-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ avocado-distribution_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:1.10:add-source (add-source) @ avocado-distribution_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/avocado/HADOOP_VERSION/2.6.0/SCALAVER/2.11/SPARK_VERSION/2.2.0/label/ubuntu/avocado-distribution/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ avocado-distribution_2.11 ---
[INFO] Modified 0 of 0 .scala files
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ avocado-distribution_2.11 ---
[INFO] No sources to compile
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[INFO] --- build-helper-maven-plugin:1.10:add-test-source (add-test-source) @ avocado-distribution_2.11 ---
[INFO] Test Source directory: /home/jenkins/workspace/avocado/HADOOP_VERSION/2.6.0/SCALAVER/2.11/SPARK_VERSION/2.2.0/label/ubuntu/avocado-distribution/src/test/scala added.
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ avocado-distribution_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-source-plugin:2.2.1:jar-no-fork (attach-sources) @ avocado-distribution_2.11 ---
[INFO] 
[INFO] --- maven-javadoc-plugin:2.9.1:jar (attach-javadocs) @ avocado-distribution_2.11 ---
[INFO] Not executing Javadoc as the project is not a Java classpath-capable package
[INFO] 
[INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ avocado-distribution_2.11 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ avocado-distribution_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:1.10:add-source (add-source) @ avocado-distribution_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/avocado/HADOOP_VERSION/2.6.0/SCALAVER/2.11/SPARK_VERSION/2.2.0/label/ubuntu/avocado-distribution/src/main/scala added.
[INFO] 
[INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ avocado-distribution_2.11 <<<
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ avocado-distribution_2.11 ---
[INFO] No source files found
[INFO] 
[INFO] --- maven-assembly-plugin:2.4.1:single (default) @ avocado-distribution_2.11 ---
[INFO] Reading assembly descriptor: src/main/assembly/assembly.xml
[INFO] Building tar: /home/jenkins/workspace/avocado/HADOOP_VERSION/2.6.0/SCALAVER/2.11/SPARK_VERSION/2.2.0/label/ubuntu/avocado-distribution/target/avocado-distribution_2.11-0.1.1-SNAPSHOT-bin.tar.gz
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[WARNING] Resulting tar file can only be processed successfully by GNU compatible tar commands
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[WARNING] Entry: avocado-distribution_2.11-0.1.1-SNAPSHOT/scaladocs/org/bdgenomics/avocado/cli/TrioGenotyperArgs.html longer than 100 characters.
[INFO] Building tar: /home/jenkins/workspace/avocado/HADOOP_VERSION/2.6.0/SCALAVER/2.11/SPARK_VERSION/2.2.0/label/ubuntu/avocado-distribution/target/avocado-distribution_2.11-0.1.1-SNAPSHOT-bin.tar.bz2
[WARNING] Entry: avocado-distribution_2.11-0.1.1-SNAPSHOT/scaladocs/org/bdgenomics/avocado/util/ForestSerializer.html longer than 100 characters.
[WARNING] Resulting tar file can only be processed successfully by GNU compatible tar commands
[WARNING] Entry: avocado-distribution_2.11-0.1.1-SNAPSHOT/scaladocs/org/bdgenomics/avocado/util/PrefilterReadsArgs.html longer than 100 characters.
[WARNING] Entry: avocado-distribution_2.11-0.1.1-SNAPSHOT/scaladocs/org/bdgenomics/avocado/serialization/package.html longer than 100 characters.
[WARNING] Entry: avocado-distribution_2.11-0.1.1-SNAPSHOT/scaladocs/org/bdgenomics/avocado/serialization/AvocadoKryoRegistrator.html longer than 100 characters.
[WARNING] Entry: avocado-distribution_2.11-0.1.1-SNAPSHOT/scaladocs/org/bdgenomics/avocado/genotyping/TrioCaller$.html longer than 100 characters.
[WARNING] Entry: avocado-distribution_2.11-0.1.1-SNAPSHOT/scaladocs/org/bdgenomics/avocado/genotyping/JointAnnotatorCaller$.html longer than 100 characters.
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[WARNING] Entry: avocado-distribution_2.11-0.1.1-SNAPSHOT/scaladocs/org/bdgenomics/avocado/models/ObservationOperator$.html longer than 100 characters.
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[WARNING] Entry: avocado-distribution_2.11-0.1.1-SNAPSHOT/scaladocs/org/bdgenomics/avocado/cli/BiallelicGenotyper.html longer than 100 characters.
[WARNING] Entry: avocado-distribution_2.11-0.1.1-SNAPSHOT/scaladocs/org/bdgenomics/avocado/cli/MergeDiscoveredArgs.html longer than 100 characters.
[WARNING] Entry: avocado-distribution_2.11-0.1.1-SNAPSHOT/scaladocs/org/bdgenomics/avocado/cli/BiallelicGenotyper$.html longer than 100 characters.
[WARNING] Entry: avocado-distribution_2.11-0.1.1-SNAPSHOT/scaladocs/org/bdgenomics/avocado/cli/BiallelicGenotyperArgs.html longer than 100 characters.
[WARNING] Entry: avocado-distribution_2.11-0.1.1-SNAPSHOT/scaladocs/org/bdgenomics/avocado/cli/DiscoverVariantsArgs.html longer than 100 characters.
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[WARNING] Entry: avocado-distribution_2.11-0.1.1-SNAPSHOT/scaladocs/org/bdgenomics/avocado/cli/TrioGenotyperArgs.html longer than 100 characters.
[INFO] Building zip: /home/jenkins/workspace/avocado/HADOOP_VERSION/2.6.0/SCALAVER/2.11/SPARK_VERSION/2.2.0/label/ubuntu/avocado-distribution/target/avocado-distribution_2.11-0.1.1-SNAPSHOT-bin.zip
[INFO] 
[INFO] --- maven-install-plugin:2.5.2:install (default-install) @ avocado-distribution_2.11 ---
[INFO] Installing /home/jenkins/workspace/avocado/HADOOP_VERSION/2.6.0/SCALAVER/2.11/SPARK_VERSION/2.2.0/label/ubuntu/avocado-distribution/pom.xml to /home/jenkins/.m2/repository/org/bdgenomics/avocado/avocado-distribution_2.11/0.1.1-SNAPSHOT/avocado-distribution_2.11-0.1.1-SNAPSHOT.pom
[INFO] Installing /home/jenkins/workspace/avocado/HADOOP_VERSION/2.6.0/SCALAVER/2.11/SPARK_VERSION/2.2.0/label/ubuntu/avocado-distribution/target/avocado-distribution_2.11-0.1.1-SNAPSHOT-bin.tar.gz to /home/jenkins/.m2/repository/org/bdgenomics/avocado/avocado-distribution_2.11/0.1.1-SNAPSHOT/avocado-distribution_2.11-0.1.1-SNAPSHOT-bin.tar.gz
[INFO] Installing /home/jenkins/workspace/avocado/HADOOP_VERSION/2.6.0/SCALAVER/2.11/SPARK_VERSION/2.2.0/label/ubuntu/avocado-distribution/target/avocado-distribution_2.11-0.1.1-SNAPSHOT-bin.tar.bz2 to /home/jenkins/.m2/repository/org/bdgenomics/avocado/avocado-distribution_2.11/0.1.1-SNAPSHOT/avocado-distribution_2.11-0.1.1-SNAPSHOT-bin.tar.bz2
[INFO] Installing /home/jenkins/workspace/avocado/HADOOP_VERSION/2.6.0/SCALAVER/2.11/SPARK_VERSION/2.2.0/label/ubuntu/avocado-distribution/target/avocado-distribution_2.11-0.1.1-SNAPSHOT-bin.zip to /home/jenkins/.m2/repository/org/bdgenomics/avocado/avocado-distribution_2.11/0.1.1-SNAPSHOT/avocado-distribution_2.11-0.1.1-SNAPSHOT-bin.zip
[INFO] 
[INFO] --- maven-deploy-plugin:2.7:deploy (default-deploy) @ avocado-distribution_2.11 ---
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[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO] 
[INFO] avocado: A Variant Caller, Distributed ............. SUCCESS [  5.725 s]
[INFO] avocado-core: Core variant calling algorithms ...... SUCCESS [ 18.388 s]
[INFO] avocado-cli: Command line interface for a distributed variant caller SUCCESS [ 25.200 s]
[INFO] avocado: distribution .............................. SUCCESS [  5.738 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESS
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 55.210 s
[INFO] Finished at: 2020-02-15T18:48:27-08:00
[INFO] Final Memory: 170M/2897M
[INFO] ------------------------------------------------------------------------
Recording test results
Finished: SUCCESS