GitHub pull request #168 of commit 5529cec377025819917c54ce35ab6296f458a030 automatically merged. [EnvInject] - Loading node environment variables. Building remotely on research-jenkins-worker-07 (research-07 ubuntu) in workspace /home/jenkins/workspace/bdg-formats-prb Cloning the remote Git repository Cloning repository https://github.com/bigdatagenomics/bdg-formats.git > git init /home/jenkins/workspace/bdg-formats-prb # timeout=10 Fetching upstream changes from https://github.com/bigdatagenomics/bdg-formats.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/bdg-formats.git +refs/heads/*:refs/remotes/origin/* > git config remote.origin.url https://github.com/bigdatagenomics/bdg-formats.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/bigdatagenomics/bdg-formats.git # timeout=10 Fetching upstream changes from https://github.com/bigdatagenomics/bdg-formats.git > git fetch --tags --progress https://github.com/bigdatagenomics/bdg-formats.git +refs/pull/*:refs/remotes/origin/pr/* > git rev-parse origin/pr/168/merge^{commit} # timeout=10 > git branch -a -v --no-abbrev --contains e9b6f03b31c8b27de19c9b73f8cd7ca183f1f2f4 # timeout=10 Checking out Revision e9b6f03b31c8b27de19c9b73f8cd7ca183f1f2f4 (origin/pr/168/merge) > git config core.sparsecheckout # timeout=10 > git checkout -f e9b6f03b31c8b27de19c9b73f8cd7ca183f1f2f4 First time build. Skipping changelog. Artifactory integration is disabled [bdg-formats-prb] $ java -classpath /home/jenkins/tools/hudson.tasks.Maven_MavenInstallation/Maven_3.1.1/boot/plexus-classworlds-2.5.1.jar -Dmaven.home=/home/jenkins/tools/hudson.tasks.Maven_MavenInstallation/Maven_3.1.1 -Dclassworlds.conf=/home/jenkins/tools/hudson.tasks.Maven_MavenInstallation/Maven_3.1.1/bin/m2.conf -Xmx4g -XX:MaxPermSize=1g org.codehaus.plexus.classworlds.launcher.Launcher -f pom.xml clean test package Java HotSpot(TM) 64-Bit Server VM warning: ignoring option MaxPermSize=1g; support was removed in 8.0 [INFO] Scanning for projects... [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building Big Data Genomics: Avro Formats 0.12.0-SNAPSHOT [INFO] ------------------------------------------------------------------------ Downloading: http://repo.maven.apache.org/maven2/org/apache/maven/plugins/maven-compiler-plugin/3.8.0/maven-compiler-plugin-3.8.0.pom 4/13 KB 8/13 KB 12/13 KB 13/13 KB Downloaded: http://repo.maven.apache.org/maven2/org/apache/maven/plugins/maven-compiler-plugin/3.8.0/maven-compiler-plugin-3.8.0.pom (13 KB at 105.6 KB/sec) Downloading: http://repo.maven.apache.org/maven2/org/apache/maven/plugins/maven-plugins/32/maven-plugins-32.pom 4/11 KB 8/11 KB 11/11 KB Downloaded: http://repo.maven.apache.org/maven2/org/apache/maven/plugins/maven-plugins/32/maven-plugins-32.pom (11 KB at 497.0 KB/sec) Downloading: http://repo.maven.apache.org/maven2/org/apache/maven/maven-parent/32/maven-parent-32.pom 4/43 KB 8/43 KB 12/43 KB 16/43 KB 20/43 KB 24/43 KB 27/43 KB 31/43 KB 35/43 KB 39/43 KB 43/43 KB Downloaded: http://repo.maven.apache.org/maven2/org/apache/maven/maven-parent/32/maven-parent-32.pom (43 KB at 1511.4 KB/sec) Downloading: http://repo.maven.apache.org/maven2/org/apache/apache/20/apache-20.pom 4/16 KB 8/16 KB 12/16 KB 16/16 KB Downloaded: http://repo.maven.apache.org/maven2/org/apache/apache/20/apache-20.pom (16 KB at 774.0 KB/sec) Downloading: http://repo.maven.apache.org/maven2/org/apache/maven/plugins/maven-compiler-plugin/3.8.0/maven-compiler-plugin-3.8.0.jar 4/61 KB 8/61 KB 12/61 KB 16/61 KB 20/61 KB 24/61 KB 28/61 KB 32/61 KB 36/61 KB 40/61 KB 44/61 KB 48/61 KB 52/61 KB 56/61 KB 60/61 KB 61/61 KB Downloaded: http://repo.maven.apache.org/maven2/org/apache/maven/plugins/maven-compiler-plugin/3.8.0/maven-compiler-plugin-3.8.0.jar (61 KB at 840.0 KB/sec) [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ bdg-formats --- [INFO] [INFO] --- maven-enforcer-plugin:1.2:enforce (enforce-maven) @ bdg-formats --- [INFO] [INFO] --- avro-maven-plugin:1.8.1:schema (schemas) @ bdg-formats --- [INFO] [INFO] --- avro-maven-plugin:1.8.1:protocol (schemas) @ bdg-formats --- [INFO] [INFO] --- avro-maven-plugin:1.8.1:idl-protocol (schemas) @ bdg-formats --- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ bdg-formats --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ bdg-formats --- Downloading: http://repo.maven.apache.org/maven2/org/apache/maven/shared/maven-shared-utils/3.2.1/maven-shared-utils-3.2.1.pom 4/6 KB 6/6 KB Downloaded: http://repo.maven.apache.org/maven2/org/apache/maven/shared/maven-shared-utils/3.2.1/maven-shared-utils-3.2.1.pom (6 KB at 366.8 KB/sec) Downloading: http://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-java/0.9.10/plexus-java-0.9.10.pom 4/5 KB 5/5 KB Downloaded: http://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-java/0.9.10/plexus-java-0.9.10.pom (5 KB at 332.6 KB/sec) Downloading: http://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-languages/0.9.10/plexus-languages-0.9.10.pom 1/5 KB 5/5 KB Downloaded: http://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-languages/0.9.10/plexus-languages-0.9.10.pom (5 KB at 288.8 KB/sec) Downloading: http://repo.maven.apache.org/maven2/org/ow2/asm/asm/6.2/asm-6.2.pom 1/3 KB 3/3 KB Downloaded: http://repo.maven.apache.org/maven2/org/ow2/asm/asm/6.2/asm-6.2.pom (3 KB at 204.8 KB/sec) Downloading: http://repo.maven.apache.org/maven2/com/thoughtworks/qdox/qdox/2.0-M9/qdox-2.0-M9.pom 1/16 KB 5/16 KB 9/16 KB 13/16 KB 16/16 KB Downloaded: http://repo.maven.apache.org/maven2/com/thoughtworks/qdox/qdox/2.0-M9/qdox-2.0-M9.pom (16 KB at 967.0 KB/sec) Downloading: http://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-compiler-api/2.8.4/plexus-compiler-api-2.8.4.pom 867/867 B Downloaded: http://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-compiler-api/2.8.4/plexus-compiler-api-2.8.4.pom (867 B at 65.1 KB/sec) Downloading: http://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-compiler/2.8.4/plexus-compiler-2.8.4.pom 4/6 KB 6/6 KB Downloaded: http://repo.maven.apache.org/maven2/org/codehaus/plexus/plexus-compiler/2.8.4/plexus-compiler-2.8.4.pom (6 KB at 420.5 KB/sec) 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[INFO] Compiling 25 source files to /home/jenkins/workspace/bdg-formats-prb/target/classes [INFO] /home/jenkins/workspace/bdg-formats-prb/target/generated-sources/avro/org/bdgenomics/formats/avro/Sequence.java: Some input files use unchecked or unsafe operations. [INFO] /home/jenkins/workspace/bdg-formats-prb/target/generated-sources/avro/org/bdgenomics/formats/avro/Sequence.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ bdg-formats --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/jenkins/workspace/bdg-formats-prb/src/test/resources [INFO] [INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ bdg-formats --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ bdg-formats --- [INFO] No tests to run. [INFO] [INFO] --- maven-enforcer-plugin:1.2:enforce (enforce-maven) @ bdg-formats --- [INFO] [INFO] --- avro-maven-plugin:1.8.1:schema (schemas) @ bdg-formats --- [INFO] [INFO] --- avro-maven-plugin:1.8.1:protocol (schemas) @ bdg-formats --- [INFO] [INFO] --- avro-maven-plugin:1.8.1:idl-protocol (schemas) @ bdg-formats --- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ bdg-formats --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ bdg-formats --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 25 source files to /home/jenkins/workspace/bdg-formats-prb/target/classes [INFO] /home/jenkins/workspace/bdg-formats-prb/target/generated-sources/avro/org/bdgenomics/formats/avro/Sequence.java: Some input files use unchecked or unsafe operations. [INFO] /home/jenkins/workspace/bdg-formats-prb/target/generated-sources/avro/org/bdgenomics/formats/avro/Sequence.java: Recompile with -Xlint:unchecked for details. [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ bdg-formats --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/jenkins/workspace/bdg-formats-prb/src/test/resources [INFO] [INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ bdg-formats --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ bdg-formats --- [INFO] No tests to run. [INFO] Skipping execution of surefire because it has already been run for this configuration [INFO] [INFO] --- maven-jar-plugin:2.4:jar (default-jar) @ bdg-formats --- [INFO] Building jar: /home/jenkins/workspace/bdg-formats-prb/target/bdg-formats-0.12.0-SNAPSHOT.jar [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ [INFO] Total time: 5.090s [INFO] Finished at: Wed Sep 19 10:57:24 PDT 2018 [INFO] Final Memory: 32M/1448M [INFO] ------------------------------------------------------------------------ Build step 'Invoke Maven 3' changed build result to SUCCESS Setting commit status on GitHub for https://github.com/bigdatagenomics/bdg-formats/commit/e9b6f03b31c8b27de19c9b73f8cd7ca183f1f2f4 Test PASSed. Refer to this link for build results (access rights to CI server needed): https://amplab.cs.berkeley.edu/jenkins//job/bdg-formats-prb/181/ Test PASSed. Finished: SUCCESS