Console Output
Started by timer
[EnvInject] - Loading node environment variables.
Building remotely on amp-jenkins-staging-worker-02 (ubuntu ubuntu-gpu ubuntu-avx2 staging-02 staging) in workspace /home/jenkins/workspace/bdg-formats
Wiping out workspace first.
Cloning the remote Git repository
Cloning repository https://github.com/bigdatagenomics/bdg-formats.git
> git init /home/jenkins/workspace/bdg-formats # timeout=10
Fetching upstream changes from https://github.com/bigdatagenomics/bdg-formats.git
> git --version # timeout=10
> git fetch --tags --progress https://github.com/bigdatagenomics/bdg-formats.git +refs/heads/*:refs/remotes/origin/*
> git config remote.origin.url https://github.com/bigdatagenomics/bdg-formats.git # timeout=10
> git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10
> git config remote.origin.url https://github.com/bigdatagenomics/bdg-formats.git # timeout=10
Fetching upstream changes from https://github.com/bigdatagenomics/bdg-formats.git
> git fetch --tags --progress https://github.com/bigdatagenomics/bdg-formats.git +refs/heads/*:refs/remotes/origin/*
> git rev-parse refs/remotes/origin/master^{commit} # timeout=10
> git rev-parse refs/remotes/origin/origin/master^{commit} # timeout=10
Checking out Revision eaf9d9eca4082199af9b226e9c0d3a86a5faaeb2 (refs/remotes/origin/master)
> git config core.sparsecheckout # timeout=10
> git checkout -f eaf9d9eca4082199af9b226e9c0d3a86a5faaeb2
> git rev-list eaf9d9eca4082199af9b226e9c0d3a86a5faaeb2 # timeout=10
[bdg-formats] $ /home/jenkins/tools/hudson.tasks.Maven_MavenInstallation/Maven_3.1.1/bin/mvn clean test package
[INFO] Scanning for projects...
[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Building Big Data Genomics: Avro Formats 0.15.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO]
[INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ bdg-formats ---
[INFO]
[INFO] --- maven-enforcer-plugin:1.2:enforce (enforce-maven) @ bdg-formats ---
[INFO]
[INFO] --- avro-maven-plugin:1.8.2:schema (schemas) @ bdg-formats ---
[INFO]
[INFO] --- avro-maven-plugin:1.8.2:protocol (schemas) @ bdg-formats ---
[INFO]
[INFO] --- avro-maven-plugin:1.8.2:idl-protocol (schemas) @ bdg-formats ---
[INFO]
[INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ bdg-formats ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 1 resource
[INFO]
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ bdg-formats ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 23 source files to /home/jenkins/workspace/bdg-formats/target/classes
[INFO]
[INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ bdg-formats ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/bdg-formats/src/test/resources
[INFO]
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ bdg-formats ---
[INFO] No sources to compile
[INFO]
[INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ bdg-formats ---
[INFO] No tests to run.
[INFO]
[INFO] --- maven-enforcer-plugin:1.2:enforce (enforce-maven) @ bdg-formats ---
[INFO]
[INFO] --- avro-maven-plugin:1.8.2:schema (schemas) @ bdg-formats ---
[INFO]
[INFO] --- avro-maven-plugin:1.8.2:protocol (schemas) @ bdg-formats ---
[INFO]
[INFO] --- avro-maven-plugin:1.8.2:idl-protocol (schemas) @ bdg-formats ---
[INFO]
[INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ bdg-formats ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 1 resource
[INFO]
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ bdg-formats ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 23 source files to /home/jenkins/workspace/bdg-formats/target/classes
[INFO]
[INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ bdg-formats ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/bdg-formats/src/test/resources
[INFO]
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ bdg-formats ---
[INFO] No sources to compile
[INFO]
[INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ bdg-formats ---
[INFO] No tests to run.
[INFO] Skipping execution of surefire because it has already been run for this configuration
[INFO]
[INFO] --- maven-jar-plugin:2.4:jar (default-jar) @ bdg-formats ---
[INFO] Building jar: /home/jenkins/workspace/bdg-formats/target/bdg-formats-0.15.0-SNAPSHOT.jar
[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESS
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 4.042s
[INFO] Finished at: Mon Oct 14 07:38:41 PDT 2019
[INFO] Final Memory: 31M/1572M
[INFO] ------------------------------------------------------------------------
[bdg-formats] $ /home/jenkins/tools/hudson.tasks.Maven_MavenInstallation/Maven_3.1.1/bin/mvn --settings=/home/jenkins/workspace/settings.xml deploy
[INFO] Scanning for projects...
[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Building Big Data Genomics: Avro Formats 0.15.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO]
[INFO] --- maven-enforcer-plugin:1.2:enforce (enforce-maven) @ bdg-formats ---
[INFO]
[INFO] --- avro-maven-plugin:1.8.2:schema (schemas) @ bdg-formats ---
[INFO]
[INFO] --- avro-maven-plugin:1.8.2:protocol (schemas) @ bdg-formats ---
[INFO]
[INFO] --- avro-maven-plugin:1.8.2:idl-protocol (schemas) @ bdg-formats ---
[INFO]
[INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ bdg-formats ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 1 resource
[INFO]
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ bdg-formats ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 23 source files to /home/jenkins/workspace/bdg-formats/target/classes
[INFO]
[INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ bdg-formats ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/bdg-formats/src/test/resources
[INFO]
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ bdg-formats ---
[INFO] No sources to compile
[INFO]
[INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ bdg-formats ---
[INFO] No tests to run.
[INFO]
[INFO] --- maven-jar-plugin:2.4:jar (default-jar) @ bdg-formats ---
[INFO] Building jar: /home/jenkins/workspace/bdg-formats/target/bdg-formats-0.15.0-SNAPSHOT.jar
[INFO]
[INFO] --- maven-install-plugin:2.4:install (default-install) @ bdg-formats ---
[INFO] Installing /home/jenkins/workspace/bdg-formats/target/bdg-formats-0.15.0-SNAPSHOT.jar to /home/jenkins/.m2/repository/org/bdgenomics/bdg-formats/bdg-formats/0.15.0-SNAPSHOT/bdg-formats-0.15.0-SNAPSHOT.jar
[INFO] Installing /home/jenkins/workspace/bdg-formats/pom.xml to /home/jenkins/.m2/repository/org/bdgenomics/bdg-formats/bdg-formats/0.15.0-SNAPSHOT/bdg-formats-0.15.0-SNAPSHOT.pom
[INFO]
[INFO] --- maven-deploy-plugin:2.7:deploy (default-deploy) @ bdg-formats ---
Downloading: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/bdg-formats/bdg-formats/0.15.0-SNAPSHOT/maven-metadata.xml
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Downloaded: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/bdg-formats/bdg-formats/0.15.0-SNAPSHOT/maven-metadata.xml (793 B at 0.9 KB/sec)
Uploading: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/bdg-formats/bdg-formats/0.15.0-SNAPSHOT/bdg-formats-0.15.0-20191014.143847-18.jar
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Uploaded: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/bdg-formats/bdg-formats/0.15.0-SNAPSHOT/bdg-formats-0.15.0-20191014.143847-18.jar (179 KB at 134.6 KB/sec)
Uploading: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/bdg-formats/bdg-formats/0.15.0-SNAPSHOT/bdg-formats-0.15.0-20191014.143847-18.pom
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Uploaded: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/bdg-formats/bdg-formats/0.15.0-SNAPSHOT/bdg-formats-0.15.0-20191014.143847-18.pom (6 KB at 4.0 KB/sec)
Downloading: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/bdg-formats/bdg-formats/maven-metadata.xml
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Downloaded: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/bdg-formats/bdg-formats/maven-metadata.xml (1006 B at 2.0 KB/sec)
Uploading: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/bdg-formats/bdg-formats/0.15.0-SNAPSHOT/maven-metadata.xml
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Uploaded: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/bdg-formats/bdg-formats/0.15.0-SNAPSHOT/maven-metadata.xml (793 B at 0.8 KB/sec)
Uploading: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/bdg-formats/bdg-formats/maven-metadata.xml
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Uploaded: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/bdg-formats/bdg-formats/maven-metadata.xml (1006 B at 0.8 KB/sec)
[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESS
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 10.103s
[INFO] Finished at: Mon Oct 14 07:38:52 PDT 2019
[INFO] Final Memory: 28M/2151M
[INFO] ------------------------------------------------------------------------
[bdg-formats] $ /bin/sh -xe /tmp/hudson3723717283205708428.sh
Setting commit status on GitHub for https://github.com/bigdatagenomics/bdg-formats/commit/eaf9d9eca4082199af9b226e9c0d3a86a5faaeb2
Warning: you have no plugins providing access control for builds, so falling back to legacy behavior of permitting any downstream builds to be triggered
Triggering a new build of cannoli
Finished: SUCCESS
