Started by timer [EnvInject] - Loading node environment variables. Building remotely on research-jenkins-worker-09 (ubuntu ubuntu-gpu research-09 ubuntu-avx2) in workspace /home/jenkins/workspace/bdg-formats Wiping out workspace first. Cloning the remote Git repository Cloning repository https://github.com/bigdatagenomics/bdg-formats.git > git init /home/jenkins/workspace/bdg-formats # timeout=10 Fetching upstream changes from https://github.com/bigdatagenomics/bdg-formats.git > git --version # timeout=10 > git fetch --tags --progress https://github.com/bigdatagenomics/bdg-formats.git +refs/heads/*:refs/remotes/origin/* > git config remote.origin.url https://github.com/bigdatagenomics/bdg-formats.git # timeout=10 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 > git config remote.origin.url https://github.com/bigdatagenomics/bdg-formats.git # timeout=10 Fetching upstream changes from https://github.com/bigdatagenomics/bdg-formats.git > git fetch --tags --progress https://github.com/bigdatagenomics/bdg-formats.git +refs/heads/*:refs/remotes/origin/* > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 > git rev-parse refs/remotes/origin/origin/master^{commit} # timeout=10 Checking out Revision 4ab3aa900fa460113d279a41f9130039377f95fe (refs/remotes/origin/master) > git config core.sparsecheckout # timeout=10 > git checkout -f 4ab3aa900fa460113d279a41f9130039377f95fe > git rev-list 4ab3aa900fa460113d279a41f9130039377f95fe # timeout=10 [bdg-formats] $ /home/jenkins/tools/hudson.tasks.Maven_MavenInstallation/Maven_3.1.1/bin/mvn clean test package [INFO] Scanning for projects... [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building Big Data Genomics: Avro Formats 0.16.0-SNAPSHOT [INFO] ------------------------------------------------------------------------ [INFO] [INFO] --- maven-clean-plugin:2.5:clean (default-clean) @ bdg-formats --- [INFO] [INFO] --- maven-enforcer-plugin:1.2:enforce (enforce-maven) @ bdg-formats --- [INFO] [INFO] --- avro-maven-plugin:1.8.2:schema (schemas) @ bdg-formats --- [INFO] [INFO] --- avro-maven-plugin:1.8.2:protocol (schemas) @ bdg-formats --- [INFO] [INFO] --- avro-maven-plugin:1.8.2:idl-protocol (schemas) @ bdg-formats --- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ bdg-formats --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ bdg-formats --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 23 source files to /home/jenkins/workspace/bdg-formats/target/classes [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ bdg-formats --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/jenkins/workspace/bdg-formats/src/test/resources [INFO] [INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ bdg-formats --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ bdg-formats --- [INFO] No tests to run. [INFO] [INFO] --- maven-enforcer-plugin:1.2:enforce (enforce-maven) @ bdg-formats --- [INFO] [INFO] --- avro-maven-plugin:1.8.2:schema (schemas) @ bdg-formats --- [INFO] [INFO] --- avro-maven-plugin:1.8.2:protocol (schemas) @ bdg-formats --- [INFO] [INFO] --- avro-maven-plugin:1.8.2:idl-protocol (schemas) @ bdg-formats --- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ bdg-formats --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ bdg-formats --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 23 source files to /home/jenkins/workspace/bdg-formats/target/classes [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ bdg-formats --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/jenkins/workspace/bdg-formats/src/test/resources [INFO] [INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ bdg-formats --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ bdg-formats --- [INFO] No tests to run. [INFO] Skipping execution of surefire because it has already been run for this configuration [INFO] [INFO] --- maven-jar-plugin:2.4:jar (default-jar) @ bdg-formats --- [INFO] Building jar: /home/jenkins/workspace/bdg-formats/target/bdg-formats-0.16.0-SNAPSHOT.jar [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ [INFO] Total time: 4.715s [INFO] Finished at: Tue Mar 31 08:16:30 PDT 2020 [INFO] Final Memory: 30M/1570M [INFO] ------------------------------------------------------------------------ [bdg-formats] $ /home/jenkins/tools/hudson.tasks.Maven_MavenInstallation/Maven_3.1.1/bin/mvn --settings=/home/jenkins/workspace/settings.xml deploy [INFO] Scanning for projects... [INFO] [INFO] ------------------------------------------------------------------------ [INFO] Building Big Data Genomics: Avro Formats 0.16.0-SNAPSHOT [INFO] ------------------------------------------------------------------------ [INFO] [INFO] --- maven-enforcer-plugin:1.2:enforce (enforce-maven) @ bdg-formats --- [INFO] [INFO] --- avro-maven-plugin:1.8.2:schema (schemas) @ bdg-formats --- [INFO] [INFO] --- avro-maven-plugin:1.8.2:protocol (schemas) @ bdg-formats --- [INFO] [INFO] --- avro-maven-plugin:1.8.2:idl-protocol (schemas) @ bdg-formats --- [INFO] [INFO] --- maven-resources-plugin:2.6:resources (default-resources) @ bdg-formats --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] Copying 1 resource [INFO] [INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ bdg-formats --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 23 source files to /home/jenkins/workspace/bdg-formats/target/classes [INFO] [INFO] --- maven-resources-plugin:2.6:testResources (default-testResources) @ bdg-formats --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/jenkins/workspace/bdg-formats/src/test/resources [INFO] [INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ bdg-formats --- [INFO] No sources to compile [INFO] [INFO] --- maven-surefire-plugin:2.12.4:test (default-test) @ bdg-formats --- [INFO] No tests to run. [INFO] [INFO] --- maven-jar-plugin:2.4:jar (default-jar) @ bdg-formats --- [INFO] Building jar: /home/jenkins/workspace/bdg-formats/target/bdg-formats-0.16.0-SNAPSHOT.jar [INFO] [INFO] --- maven-install-plugin:2.4:install (default-install) @ bdg-formats --- [INFO] Installing /home/jenkins/workspace/bdg-formats/target/bdg-formats-0.16.0-SNAPSHOT.jar to /home/jenkins/.m2/repository/org/bdgenomics/bdg-formats/bdg-formats/0.16.0-SNAPSHOT/bdg-formats-0.16.0-SNAPSHOT.jar [INFO] Installing /home/jenkins/workspace/bdg-formats/pom.xml to /home/jenkins/.m2/repository/org/bdgenomics/bdg-formats/bdg-formats/0.16.0-SNAPSHOT/bdg-formats-0.16.0-SNAPSHOT.pom [INFO] [INFO] --- maven-deploy-plugin:2.7:deploy (default-deploy) @ bdg-formats --- Downloading: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/bdg-formats/bdg-formats/0.16.0-SNAPSHOT/maven-metadata.xml 793/793 B Downloaded: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/bdg-formats/bdg-formats/0.16.0-SNAPSHOT/maven-metadata.xml (793 B at 0.2 KB/sec) Uploading: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/bdg-formats/bdg-formats/0.16.0-SNAPSHOT/bdg-formats-0.16.0-20200331.151640-64.jar 2/179 KB 4/179 KB 6/179 KB 8/179 KB 10/179 KB 12/179 KB 14/179 KB 16/179 KB 18/179 KB 20/179 KB 22/179 KB 24/179 KB 26/179 KB 28/179 KB 30/179 KB 32/179 KB 34/179 KB 36/179 KB 38/179 KB 40/179 KB 42/179 KB 44/179 KB 46/179 KB 48/179 KB 50/179 KB 52/179 KB 54/179 KB 56/179 KB 58/179 KB 60/179 KB 62/179 KB 64/179 KB 66/179 KB 68/179 KB 70/179 KB 72/179 KB 74/179 KB 76/179 KB 78/179 KB 80/179 KB 82/179 KB 84/179 KB 86/179 KB 88/179 KB 90/179 KB 92/179 KB 94/179 KB 96/179 KB 98/179 KB 100/179 KB 102/179 KB 104/179 KB 106/179 KB 108/179 KB 110/179 KB 112/179 KB 114/179 KB 116/179 KB 118/179 KB 120/179 KB 122/179 KB 124/179 KB 126/179 KB 128/179 KB 130/179 KB 132/179 KB 134/179 KB 136/179 KB 138/179 KB 140/179 KB 142/179 KB 144/179 KB 146/179 KB 148/179 KB 150/179 KB 152/179 KB 154/179 KB 156/179 KB 158/179 KB 160/179 KB 162/179 KB 164/179 KB 166/179 KB 168/179 KB 170/179 KB 172/179 KB 174/179 KB 176/179 KB 178/179 KB 179/179 KB Uploaded: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/bdg-formats/bdg-formats/0.16.0-SNAPSHOT/bdg-formats-0.16.0-20200331.151640-64.jar (179 KB at 35.6 KB/sec) Uploading: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/bdg-formats/bdg-formats/0.16.0-SNAPSHOT/bdg-formats-0.16.0-20200331.151640-64.pom 2/6 KB 4/6 KB 6/6 KB Uploaded: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/bdg-formats/bdg-formats/0.16.0-SNAPSHOT/bdg-formats-0.16.0-20200331.151640-64.pom (6 KB at 4.1 KB/sec) Downloading: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/bdg-formats/bdg-formats/maven-metadata.xml 924/924 B Downloaded: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/bdg-formats/bdg-formats/maven-metadata.xml (924 B at 2.0 KB/sec) Uploading: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/bdg-formats/bdg-formats/0.16.0-SNAPSHOT/maven-metadata.xml 793/793 B Uploaded: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/bdg-formats/bdg-formats/0.16.0-SNAPSHOT/maven-metadata.xml (793 B at 0.9 KB/sec) Uploading: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/bdg-formats/bdg-formats/maven-metadata.xml 924/924 B Uploaded: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/bdg-formats/bdg-formats/maven-metadata.xml (924 B at 0.7 KB/sec) [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ [INFO] Total time: 17.979s [INFO] Finished at: Tue Mar 31 08:16:49 PDT 2020 [INFO] Final Memory: 35M/2307M [INFO] ------------------------------------------------------------------------ [bdg-formats] $ /bin/sh -xe /tmp/hudson8832547276687809418.sh Setting commit status on GitHub for https://github.com/bigdatagenomics/bdg-formats/commit/4ab3aa900fa460113d279a41f9130039377f95fe Warning: you have no plugins providing access control for builds, so falling back to legacy behavior of permitting any downstream builds to be triggered Triggering a new build of cannoli Finished: SUCCESS