Started by upstream project "cannoli" build number 2203 originally caused by: Started by timer Running as SYSTEM [EnvInject] - Loading node environment variables. Building remotely on research-jenkins-worker-09 (ubuntu ubuntu-gpu research-09 ubuntu-avx2) in workspace /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu The recommended git tool is: NONE No credentials specified > git rev-parse --is-inside-work-tree # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/bigdatagenomics/cannoli.git # timeout=10 Fetching upstream changes from https://github.com/bigdatagenomics/cannoli.git > git --version # timeout=10 > git --version # 'git version 2.7.4' > git fetch --tags --progress https://github.com/bigdatagenomics/cannoli.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Checking out Revision eb0243314c3e4d2a95eb16db3531e26c1aec164f (refs/remotes/origin/master) > git config core.sparsecheckout # timeout=10 > git checkout -f eb0243314c3e4d2a95eb16db3531e26c1aec164f # timeout=10 Commit message: "remove adam-shade dependency" > git rev-list --no-walk eb0243314c3e4d2a95eb16db3531e26c1aec164f # timeout=10 Cleaning workspace > git rev-parse --verify HEAD # timeout=10 Resetting working tree > git reset --hard # timeout=10 > git clean -fdx # timeout=10 [ubuntu] $ /bin/bash /tmp/jenkins573685055359622240.sh + set -e + unset SPARK_TESTING + export JAVA_HOME=/usr/java/latest + JAVA_HOME=/usr/java/latest + export CONDA_BIN=/home/anaconda/bin/ + CONDA_BIN=/home/anaconda/bin/ + export PATH=/usr/java/latest/bin/:/home/anaconda/bin/:/home/jenkins/tools/hudson.tasks.Maven_MavenInstallation/Maven_3.6.3/bin/:/home/jenkins/gems/bin:/usr/local/go/bin:/home/jenkins/go-projects/bin:/home/jenkins/anaconda2/bin:/home/jenkins/tools/hudson.tasks.Maven_MavenInstallation/Maven_3.6.3/bin/:/home/jenkins/gems/bin:/usr/local/go/bin:/home/jenkins/go-projects/bin:/home/jenkins/anaconda2/bin:/home/jenkins/tools/hudson.tasks.Maven_MavenInstallation/Maven_3.6.3/bin/:/home/jenkins/gems/bin:/usr/local/go/bin:/home/jenkins/go-projects/bin:/home/jenkins/anaconda2/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games + PATH=/usr/java/latest/bin/:/home/anaconda/bin/:/home/jenkins/tools/hudson.tasks.Maven_MavenInstallation/Maven_3.6.3/bin/:/home/jenkins/gems/bin:/usr/local/go/bin:/home/jenkins/go-projects/bin:/home/jenkins/anaconda2/bin:/home/jenkins/tools/hudson.tasks.Maven_MavenInstallation/Maven_3.6.3/bin/:/home/jenkins/gems/bin:/usr/local/go/bin:/home/jenkins/go-projects/bin:/home/jenkins/anaconda2/bin:/home/jenkins/tools/hudson.tasks.Maven_MavenInstallation/Maven_3.6.3/bin/:/home/jenkins/gems/bin:/usr/local/go/bin:/home/jenkins/go-projects/bin:/home/jenkins/anaconda2/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games + /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/scripts/jenkins-test # make a tempdir for writing maven cruft to CANNOLI_MVN_TMP_DIR=$(mktemp -d -t cannoliTestMvnXXXXXXX) mktemp -d -t cannoliTestMvnXXXXXXX ++ mktemp -d -t cannoliTestMvnXXXXXXX + CANNOLI_MVN_TMP_DIR=/tmp/cannoliTestMvnKPcLzvd # add this tempdir to the poms... find . -name pom.xml \ -exec sed -i.bak \ -e "s:sun.io.serialization.extendedDebugInfo=true:sun.io.serialization.extendedDebugInfo=true -Djava.io.tmpdir=${CANNOLI_MVN_TMP_DIR}:g" \ {} \; + find . -name pom.xml -exec sed -i.bak -e 's:sun.io.serialization.extendedDebugInfo=true:sun.io.serialization.extendedDebugInfo=true -Djava.io.tmpdir=/tmp/cannoliTestMvnKPcLzvd:g' '{}' ';' find . -name "*.bak" -exec rm -f {} \; + find . -name '*.bak' -exec rm -f '{}' ';' # variable declarations export PATH=${JAVA_HOME}/bin/:${PATH} + export PATH=/usr/java/latest/bin/:/usr/java/latest/bin/:/home/anaconda/bin/:/home/jenkins/tools/hudson.tasks.Maven_MavenInstallation/Maven_3.6.3/bin/:/home/jenkins/gems/bin:/usr/local/go/bin:/home/jenkins/go-projects/bin:/home/jenkins/anaconda2/bin:/home/jenkins/tools/hudson.tasks.Maven_MavenInstallation/Maven_3.6.3/bin/:/home/jenkins/gems/bin:/usr/local/go/bin:/home/jenkins/go-projects/bin:/home/jenkins/anaconda2/bin:/home/jenkins/tools/hudson.tasks.Maven_MavenInstallation/Maven_3.6.3/bin/:/home/jenkins/gems/bin:/usr/local/go/bin:/home/jenkins/go-projects/bin:/home/jenkins/anaconda2/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games + PATH=/usr/java/latest/bin/:/usr/java/latest/bin/:/home/anaconda/bin/:/home/jenkins/tools/hudson.tasks.Maven_MavenInstallation/Maven_3.6.3/bin/:/home/jenkins/gems/bin:/usr/local/go/bin:/home/jenkins/go-projects/bin:/home/jenkins/anaconda2/bin:/home/jenkins/tools/hudson.tasks.Maven_MavenInstallation/Maven_3.6.3/bin/:/home/jenkins/gems/bin:/usr/local/go/bin:/home/jenkins/go-projects/bin:/home/jenkins/anaconda2/bin:/home/jenkins/tools/hudson.tasks.Maven_MavenInstallation/Maven_3.6.3/bin/:/home/jenkins/gems/bin:/usr/local/go/bin:/home/jenkins/go-projects/bin:/home/jenkins/anaconda2/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games export MAVEN_OPTS="-Xmx1536m -XX:MaxPermSize=1g -Dfile.encoding=utf-8" + export 'MAVEN_OPTS=-Xmx1536m -XX:MaxPermSize=1g -Dfile.encoding=utf-8' + MAVEN_OPTS='-Xmx1536m -XX:MaxPermSize=1g -Dfile.encoding=utf-8' DIR=$( cd $( dirname ${BASH_SOURCE[0]} ) && pwd ) cd $( dirname ${BASH_SOURCE[0]} ) && pwd dirname ${BASH_SOURCE[0]} +++ dirname /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/scripts/jenkins-test ++ cd /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/scripts ++ pwd + DIR=/home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/scripts PROJECT_ROOT=${DIR}/.. + PROJECT_ROOT=/home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/scripts/.. VERSION=$(grep "<version>" ${PROJECT_ROOT}/pom.xml | head -2 | tail -1 | sed 's/ *<version>//g' | sed 's/<\/version>//g') grep "<version>" ${PROJECT_ROOT}/pom.xml | head -2 | tail -1 | sed 's/ *<version>//g' | sed 's/<\/version>//g' ++ grep '<version>' /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/scripts/../pom.xml ++ head -2 ++ tail -1 ++ sed 's/ *<version>//g' ++ sed 's/<\/version>//g' + VERSION=0.12.0-SNAPSHOT # is the hadoop version set? if ! [[ ${HADOOP_VERSION} ]]; then echo "HADOOP_VERSION environment variable is not set." echo "Please set this variable before running." exit 1 fi + [[ -n 3.2.1 ]] # is the scala version set? if ! [[ ${SCALA_VERSION} ]]; then echo "SCALA_VERSION environment variable is not set." echo "Please set this variable before running." exit 1 fi + [[ -n 2.12 ]] # is the spark version set? if ! [[ ${SPARK_VERSION} ]]; then echo "SPARK_VERSION environment variable is not set." echo "Please set this variable before running." exit 1 fi + [[ -n 3.0.1 ]] # print versions echo "Testing Cannoli version ${VERSION} on Spark ${SPARK_VERSION} Scala ${SCALA_VERSION} and Hadoop ${HADOOP_VERSION}" + echo 'Testing Cannoli version 0.12.0-SNAPSHOT on Spark 3.0.1 Scala 2.12 and Hadoop 3.2.1' Testing Cannoli version 0.12.0-SNAPSHOT on Spark 3.0.1 Scala 2.12 and Hadoop 3.2.1 # build the distribution package and the integration tests mvn -U \ clean \ package \ -Dhadoop.version=${HADOOP_VERSION} + mvn -U clean package -Dhadoop.version=3.2.1 OpenJDK 64-Bit Server VM warning: ignoring option MaxPermSize=1g; support was removed in 8.0 [INFO] Scanning for projects... [INFO] ------------------------------------------------------------------------ [INFO] Reactor Build Order: [INFO] [INFO] Cannoli_2.12 [pom] [INFO] Cannoli_2.12: Builder [jar] [INFO] Cannoli_2.12: Core [jar] [INFO] Cannoli_2.12: CLI [jar] [INFO] Cannoli_2.12: Assembly [jar] [INFO] [INFO] ---------< org.bdgenomics.cannoli:cannoli-parent-spark3_2.12 >---------- [INFO] Building Cannoli_2.12 0.12.0-SNAPSHOT [1/5] [INFO] --------------------------------[ pom ]--------------------------------- [INFO] [INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ cannoli-parent-spark3_2.12 --- [INFO] [INFO] --- maven-enforcer-plugin:1.2:enforce (enforce-maven) @ cannoli-parent-spark3_2.12 --- [INFO] [INFO] --- maven-enforcer-plugin:1.2:enforce (enforce-java) @ cannoli-parent-spark3_2.12 --- [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ cannoli-parent-spark3_2.12 --- [INFO] Source directory: /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/src/main/scala added. [INFO] [INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ cannoli-parent-spark3_2.12 --- [INFO] Modified 0 of 55 .scala files [INFO] [INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ cannoli-parent-spark3_2.12 --- [INFO] No sources to compile [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ cannoli-parent-spark3_2.12 --- [INFO] Test Source directory: /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/src/test/scala added. [INFO] [INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ cannoli-parent-spark3_2.12 --- [INFO] No sources to compile [INFO] [INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-javadocs) > generate-sources @ cannoli-parent-spark3_2.12 >>> [INFO] [INFO] --- maven-enforcer-plugin:1.2:enforce (enforce-maven) @ cannoli-parent-spark3_2.12 --- [INFO] [INFO] --- maven-enforcer-plugin:1.2:enforce (enforce-java) @ cannoli-parent-spark3_2.12 --- [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ cannoli-parent-spark3_2.12 --- [INFO] Source directory: /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/src/main/scala added. [INFO] [INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-javadocs) < generate-sources @ cannoli-parent-spark3_2.12 <<< [INFO] [INFO] [INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-javadocs) @ cannoli-parent-spark3_2.12 --- [INFO] No source files found [INFO] [INFO] ---------< org.bdgenomics.cannoli:cannoli-builder-spark3_2.12 >--------- [INFO] Building Cannoli_2.12: Builder 0.12.0-SNAPSHOT [2/5] [INFO] --------------------------------[ jar ]--------------------------------- Downloading from sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/adam/adam-core-spark3_2.12/0.34.0-SNAPSHOT/maven-metadata.xml Progress (1): 1.4 kB Downloaded from sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/adam/adam-core-spark3_2.12/0.34.0-SNAPSHOT/maven-metadata.xml (1.4 kB at 363 B/s) Downloading from sonatype-nexus-snapshots: 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[INFO] [INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ cannoli-builder-spark3_2.12 --- [INFO] Modified 0 of 0 .scala files [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ cannoli-builder-spark3_2.12 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/builder/src/main/resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ cannoli-builder-spark3_2.12 --- [WARNING] Expected all dependencies to require Scala version: 2.12.10 [WARNING] org.bdgenomics.utils:utils-misc-spark3_2.12:0.3.0 requires scala version: 2.12.8 [WARNING] Multiple versions of scala libraries detected! [INFO] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/builder/src/main/java:-1: info: compiling [INFO] Compiling 7 source files to /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/builder/target/scala-2.12.10/classes at 1615484379984 [INFO] prepare-compile in 0 s [INFO] compile in 1 s [INFO] [INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ cannoli-builder-spark3_2.12 --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 7 source files to /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/builder/target/scala-2.12.10/classes [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ cannoli-builder-spark3_2.12 --- [INFO] Test Source directory: /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/builder/src/test/scala added. [INFO] [INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ cannoli-builder-spark3_2.12 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/builder/src/test/resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ cannoli-builder-spark3_2.12 --- [WARNING] Expected all dependencies to require Scala version: 2.12.10 [WARNING] org.bdgenomics.utils:utils-misc-spark3_2.12:0.3.0 requires scala version: 2.12.8 [WARNING] Multiple versions of scala libraries detected! [INFO] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/builder/src/test/java:-1: info: compiling [INFO] Compiling 4 source files to /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/builder/target/scala-2.12.10/test-classes at 1615484382825 [INFO] prepare-compile in 0 s [INFO] compile in 1 s [INFO] [INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ cannoli-builder-spark3_2.12 --- [INFO] Changes detected - recompiling the module! [INFO] Compiling 4 source files to /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/builder/target/scala-2.12.10/test-classes [INFO] [INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ cannoli-builder-spark3_2.12 --- [INFO] [INFO] ------------------------------------------------------- [INFO] T E S T S [INFO] ------------------------------------------------------- [INFO] Running org.bdgenomics.cannoli.builder.LocalBuilderTest [INFO] Tests run: 18, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.081 s - in org.bdgenomics.cannoli.builder.LocalBuilderTest [INFO] Running org.bdgenomics.cannoli.builder.DockerBuilderTest [INFO] Tests run: 12, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in org.bdgenomics.cannoli.builder.DockerBuilderTest [INFO] Running org.bdgenomics.cannoli.builder.CommandBuildersTest [INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.bdgenomics.cannoli.builder.CommandBuildersTest [INFO] Running org.bdgenomics.cannoli.builder.SingularityBuilderTest [INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in org.bdgenomics.cannoli.builder.SingularityBuilderTest [INFO] [INFO] Results: [INFO] [INFO] Tests run: 40, Failures: 0, Errors: 0, Skipped: 0 [INFO] [INFO] [INFO] --- maven-jar-plugin:3.1.2:jar (default-jar) @ cannoli-builder-spark3_2.12 --- [INFO] Building jar: /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/builder/target/cannoli-builder-spark3_2.12-0.12.0-SNAPSHOT.jar [INFO] [INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-javadocs) > generate-sources @ cannoli-builder-spark3_2.12 >>> [INFO] [INFO] --- maven-enforcer-plugin:1.2:enforce (enforce-maven) @ cannoli-builder-spark3_2.12 --- [INFO] [INFO] --- maven-enforcer-plugin:1.2:enforce (enforce-java) @ cannoli-builder-spark3_2.12 --- [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ cannoli-builder-spark3_2.12 --- [INFO] Source directory: /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/builder/src/main/scala added. [INFO] [INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-javadocs) < generate-sources @ cannoli-builder-spark3_2.12 <<< [INFO] [INFO] [INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-javadocs) @ cannoli-builder-spark3_2.12 --- [WARNING] Expected all dependencies to require Scala version: 2.12.10 [WARNING] org.bdgenomics.utils:utils-misc-spark3_2.12:0.3.0 requires scala version: 2.12.8 [WARNING] Multiple versions of scala libraries detected! [WARNING] Expected all dependencies to require Scala version: 2.12.10 [WARNING] org.bdgenomics.utils:utils-misc-spark3_2.12:0.3.0 requires scala version: 2.12.8 [WARNING] Multiple versions of scala libraries detected! model contains 10 documentable templates /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/builder/src/main/java/org/bdgenomics/cannoli/builder/CommandBuilder.java:449: warning: Could not find any member to link for "IllegalStateException". /** ^ one warning found [INFO] Building jar: /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/builder/target/cannoli-builder-spark3_2.12-0.12.0-SNAPSHOT-javadoc.jar [INFO] [INFO] ----------< org.bdgenomics.cannoli:cannoli-core-spark3_2.12 >----------- [INFO] Building Cannoli_2.12: Core 0.12.0-SNAPSHOT [3/5] [INFO] --------------------------------[ jar ]--------------------------------- [INFO] [INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ cannoli-core-spark3_2.12 --- [INFO] [INFO] --- maven-enforcer-plugin:1.2:enforce (enforce-maven) @ cannoli-core-spark3_2.12 --- [INFO] [INFO] --- maven-enforcer-plugin:1.2:enforce (enforce-java) @ cannoli-core-spark3_2.12 --- [INFO] [INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ cannoli-core-spark3_2.12 --- [INFO] Source directory: /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala added. [INFO] [INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ cannoli-core-spark3_2.12 --- [INFO] Modified 0 of 28 .scala files [INFO] [INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ cannoli-core-spark3_2.12 --- [INFO] Using 'UTF-8' encoding to copy filtered resources. [INFO] skip non existing resourceDirectory /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/resources [INFO] [INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ cannoli-core-spark3_2.12 --- [WARNING] Expected all dependencies to require Scala version: 2.12.10 [WARNING] com.twitter:chill_2.12:0.9.5 requires scala version: 2.12.10 [WARNING] org.apache.spark:spark-network-common_2.12:3.0.1 requires scala version: 2.12.10 [WARNING] org.scala-lang.modules:scala-xml_2.12:1.2.0 requires scala version: 2.12.8 [WARNING] Multiple versions of scala libraries detected! [INFO] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala:-1: info: compiling [INFO] Compiling 27 source files to /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/target/scala-2.12.10/classes at 1615484390447 [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/BcftoolsCall.scala:23: error: object rdd is not a member of package org.bdgenomics.adam [ERROR] import org.bdgenomics.adam.rdd.ADAMContext._ [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/BcftoolsCall.scala:24: error: object rdd is not a member of package org.bdgenomics.adam [ERROR] import org.bdgenomics.adam.rdd.variant.{ VariantContextDataset, VCFInFormatter, VCFOutFormatter } [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/BcftoolsCall.scala:68: error: not found: type VariantContextDataset [ERROR] sc: SparkContext) extends CannoliFn[VariantContextDataset, VariantContextDataset](sc) { [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/BcftoolsCall.scala:68: error: not found: type VariantContextDataset [ERROR] sc: SparkContext) extends CannoliFn[VariantContextDataset, VariantContextDataset](sc) { [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/BcftoolsCall.scala:70: error: not found: type VariantContextDataset [ERROR] override def apply(variants: VariantContextDataset): VariantContextDataset = { [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/BcftoolsCall.scala:70: error: not found: type VariantContextDataset [ERROR] override def apply(variants: VariantContextDataset): VariantContextDataset = { [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/BcftoolsCall.scala:89: error: not found: value VCFInFormatter [ERROR] implicit val tFormatter = VCFInFormatter [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/BcftoolsCall.scala:90: error: not found: type VCFOutFormatter [ERROR] implicit val uFormatter = new VCFOutFormatter(sc.hadoopConfiguration, stringency) [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/BcftoolsCall.scala:92: error: not found: type VariantContextDataset [ERROR] variants.pipe[VariantContext, VariantContextProduct, VariantContextDataset, VCFInFormatter]( [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/BcftoolsCall.scala:92: error: not found: type VCFInFormatter [ERROR] variants.pipe[VariantContext, VariantContextProduct, VariantContextDataset, VCFInFormatter]( [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/BcftoolsCall.scala:93: error: not found: value cmd [ERROR] cmd = builder.build(), [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/BcftoolsCall.scala:94: error: ambiguous reference to overloaded definition, [ERROR] both method files in class CannoliFn of type (pathName: String, filter: org.apache.hadoop.fs.PathFilter)Seq[String] [ERROR] and method files in class CannoliFn of type (pathName: String)Seq[String] [ERROR] match expected type ? [ERROR] files = builder.getFiles() [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/BcftoolsMpileup.scala:23: error: object rdd is not a member of package org.bdgenomics.adam [ERROR] import org.bdgenomics.adam.rdd.ADAMContext._ [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/BcftoolsMpileup.scala:24: error: object rdd is not a member of package org.bdgenomics.adam [ERROR] import org.bdgenomics.adam.rdd.read.{ AlignmentDataset, BAMInFormatter } [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/BcftoolsMpileup.scala:25: error: object rdd is not a member of package org.bdgenomics.adam [ERROR] import org.bdgenomics.adam.rdd.variant.{ VariantContextDataset, VCFOutFormatter } [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/BcftoolsMpileup.scala:72: error: not found: type AlignmentDataset [ERROR] sc: SparkContext) extends CannoliFn[AlignmentDataset, VariantContextDataset](sc) { [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/BcftoolsMpileup.scala:72: error: not found: type VariantContextDataset [ERROR] sc: SparkContext) extends CannoliFn[AlignmentDataset, VariantContextDataset](sc) { [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/BcftoolsMpileup.scala:74: error: not found: type VariantContextDataset [ERROR] override def apply(alignments: AlignmentDataset): VariantContextDataset = { [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/BcftoolsMpileup.scala:74: error: not found: type AlignmentDataset [ERROR] override def apply(alignments: AlignmentDataset): VariantContextDataset = { [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/BcftoolsMpileup.scala:102: error: not found: value BAMInFormatter [ERROR] implicit val tFormatter = BAMInFormatter [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/BcftoolsMpileup.scala:103: error: not found: type VCFOutFormatter [ERROR] implicit val uFormatter = new VCFOutFormatter(sc.hadoopConfiguration, stringency) [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/BcftoolsMpileup.scala:105: error: not found: type VariantContextDataset [ERROR] alignments.pipe[VariantContext, VariantContextProduct, VariantContextDataset, BAMInFormatter]( [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/BcftoolsMpileup.scala:105: error: not found: type BAMInFormatter [ERROR] alignments.pipe[VariantContext, VariantContextProduct, VariantContextDataset, BAMInFormatter]( [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/BcftoolsMpileup.scala:106: error: not found: value cmd [ERROR] cmd = builder.build(), [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/BcftoolsMpileup.scala:107: error: ambiguous reference to overloaded definition, [ERROR] both method files in class CannoliFn of type (pathName: String, filter: org.apache.hadoop.fs.PathFilter)Seq[String] [ERROR] and method files in class CannoliFn of type (pathName: String)Seq[String] [ERROR] match expected type ? [ERROR] files = builder.getFiles() [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/BcftoolsNorm.scala:23: error: object rdd is not a member of package org.bdgenomics.adam [ERROR] import org.bdgenomics.adam.rdd.ADAMContext._ [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/BcftoolsNorm.scala:24: error: object rdd is not a member of package org.bdgenomics.adam [ERROR] import org.bdgenomics.adam.rdd.variant.{ [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/BcftoolsNorm.scala:72: error: not found: type VariantContextDataset [ERROR] sc: SparkContext) extends CannoliFn[VariantContextDataset, VariantContextDataset](sc) { [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/BcftoolsNorm.scala:72: error: not found: type VariantContextDataset [ERROR] sc: SparkContext) extends CannoliFn[VariantContextDataset, VariantContextDataset](sc) { [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/BcftoolsNorm.scala:74: error: not found: type VariantContextDataset [ERROR] override def apply(variantContexts: VariantContextDataset): VariantContextDataset = { [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/BcftoolsNorm.scala:74: error: not found: type VariantContextDataset [ERROR] override def apply(variantContexts: VariantContextDataset): VariantContextDataset = { [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/BcftoolsNorm.scala:97: error: not found: value VCFInFormatter [ERROR] implicit val tFormatter = VCFInFormatter [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/BcftoolsNorm.scala:98: error: not found: type VCFOutFormatter [ERROR] implicit val uFormatter = new VCFOutFormatter(sc.hadoopConfiguration, stringency) [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/BcftoolsNorm.scala:100: error: not found: type VariantContextDataset [ERROR] variantContexts.pipe[VariantContext, VariantContextProduct, VariantContextDataset, VCFInFormatter]( [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/BcftoolsNorm.scala:100: error: not found: type VCFInFormatter [ERROR] variantContexts.pipe[VariantContext, VariantContextProduct, VariantContextDataset, VCFInFormatter]( [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/BcftoolsNorm.scala:101: error: not found: value cmd [ERROR] cmd = builder.build(), [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/BcftoolsNorm.scala:102: error: ambiguous reference to overloaded definition, [ERROR] both method files in class CannoliFn of type (pathName: String, filter: org.apache.hadoop.fs.PathFilter)Seq[String] [ERROR] and method files in class CannoliFn of type (pathName: String)Seq[String] [ERROR] match expected type ? [ERROR] files = builder.getFiles() [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/BedtoolsIntersect.scala:21: error: object rdd is not a member of package org.bdgenomics.adam [ERROR] import org.bdgenomics.adam.rdd.ADAMContext._ [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/BedtoolsIntersect.scala:22: error: object rdd is not a member of package org.bdgenomics.adam [ERROR] import org.bdgenomics.adam.rdd.feature.{ [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/BedtoolsIntersect.scala:83: error: not found: type FeatureDataset [ERROR] sc: SparkContext) extends CannoliFn[FeatureDataset, FeatureDataset](sc) { [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/BedtoolsIntersect.scala:83: error: not found: type FeatureDataset [ERROR] sc: SparkContext) extends CannoliFn[FeatureDataset, FeatureDataset](sc) { [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/BedtoolsIntersect.scala:85: error: not found: type FeatureDataset [ERROR] override def apply(features: FeatureDataset): FeatureDataset = { [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/BedtoolsIntersect.scala:85: error: not found: type FeatureDataset [ERROR] override def apply(features: FeatureDataset): FeatureDataset = { [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/BedtoolsIntersect.scala:114: error: not found: value BEDInFormatter [ERROR] implicit val tFormatter = BEDInFormatter [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/BedtoolsIntersect.scala:115: error: not found: type BEDOutFormatter [ERROR] implicit val uFormatter = new BEDOutFormatter [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/BedtoolsIntersect.scala:117: error: not found: type FeatureDataset [ERROR] features.pipe[Feature, FeatureProduct, FeatureDataset, BEDInFormatter]( [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/BedtoolsIntersect.scala:117: error: not found: type BEDInFormatter [ERROR] features.pipe[Feature, FeatureProduct, FeatureDataset, BEDInFormatter]( [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/BedtoolsIntersect.scala:118: error: not found: value cmd [ERROR] cmd = builder.build(), [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/BedtoolsIntersect.scala:119: error: ambiguous reference to overloaded definition, [ERROR] both method files in class CannoliFn of type (pathName: String, filter: org.apache.hadoop.fs.PathFilter)Seq[String] [ERROR] and method files in class CannoliFn of type (pathName: String)Seq[String] [ERROR] match expected type ? [ERROR] files = builder.getFiles() [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/Blastn.scala:23: error: object rdd is not a member of package org.bdgenomics.adam [ERROR] import org.bdgenomics.adam.rdd.ADAMContext._ [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/Blastn.scala:24: error: object rdd is not a member of package org.bdgenomics.adam [ERROR] import org.bdgenomics.adam.rdd.read.{ AlignmentDataset, AnySAMOutFormatter } [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/Blastn.scala:25: error: object rdd is not a member of package org.bdgenomics.adam [ERROR] import org.bdgenomics.adam.rdd.sequence.{ FASTAInFormatter, SequenceDataset } [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/Blastn.scala:98: error: not found: type SequenceDataset [ERROR] sc: SparkContext) extends CannoliFn[SequenceDataset, AlignmentDataset](sc) { [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/Blastn.scala:98: error: not found: type AlignmentDataset [ERROR] sc: SparkContext) extends CannoliFn[SequenceDataset, AlignmentDataset](sc) { [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/Blastn.scala:100: error: not found: type AlignmentDataset [ERROR] override def apply(sequences: SequenceDataset): AlignmentDataset = { [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/Blastn.scala:100: error: not found: type SequenceDataset [ERROR] override def apply(sequences: SequenceDataset): AlignmentDataset = { [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/Blastn.scala:147: error: not found: value FASTAInFormatter [ERROR] implicit val tFormatter = FASTAInFormatter [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/Blastn.scala:148: error: not found: type AnySAMOutFormatter [ERROR] implicit val uFormatter = new AnySAMOutFormatter(ValidationStringency.valueOf(args.stringency)) [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/Blastn.scala:150: error: not found: type AlignmentDataset [ERROR] sequences.pipe[Alignment, AlignmentProduct, AlignmentDataset, FASTAInFormatter]( [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/Blastn.scala:150: error: not found: type FASTAInFormatter [ERROR] sequences.pipe[Alignment, AlignmentProduct, AlignmentDataset, FASTAInFormatter]( [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/Blastn.scala:151: error: not found: value cmd [ERROR] cmd = builder.build(), [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/Blastn.scala:152: error: ambiguous reference to overloaded definition, [ERROR] both method files in class CannoliFn of type (pathName: String, filter: org.apache.hadoop.fs.PathFilter)Seq[String] [ERROR] and method files in class CannoliFn of type (pathName: String)Seq[String] [ERROR] match expected type ? [ERROR] files = builder.getFiles() [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/Bowtie.scala:21: error: object rdd is not a member of package org.bdgenomics.adam [ERROR] import org.bdgenomics.adam.rdd.ADAMContext._ [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/Bowtie.scala:22: error: object rdd is not a member of package org.bdgenomics.adam [ERROR] import org.bdgenomics.adam.rdd.fragment.{ FragmentDataset, InterleavedFASTQInFormatter } [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/Bowtie.scala:23: error: object rdd is not a member of package org.bdgenomics.adam [ERROR] import org.bdgenomics.adam.rdd.read.{ AlignmentDataset, AnySAMOutFormatter } [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/Bowtie.scala:66: error: not found: type FragmentDataset [ERROR] sc: SparkContext) extends CannoliFn[FragmentDataset, AlignmentDataset](sc) { [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/Bowtie.scala:66: error: not found: type AlignmentDataset [ERROR] sc: SparkContext) extends CannoliFn[FragmentDataset, AlignmentDataset](sc) { [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/Bowtie.scala:68: error: not found: type AlignmentDataset [ERROR] override def apply(fragments: FragmentDataset): AlignmentDataset = { [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/Bowtie.scala:68: error: not found: type FragmentDataset [ERROR] override def apply(fragments: FragmentDataset): AlignmentDataset = { [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/Bowtie.scala:94: error: not found: value InterleavedFASTQInFormatter [ERROR] implicit val tFormatter = InterleavedFASTQInFormatter [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/Bowtie.scala:95: error: not found: type AnySAMOutFormatter [ERROR] implicit val uFormatter = new AnySAMOutFormatter [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/Bowtie.scala:97: error: not found: type AlignmentDataset [ERROR] fragments.pipe[Alignment, AlignmentProduct, AlignmentDataset, InterleavedFASTQInFormatter]( [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/Bowtie.scala:97: error: not found: type InterleavedFASTQInFormatter [ERROR] fragments.pipe[Alignment, AlignmentProduct, AlignmentDataset, InterleavedFASTQInFormatter]( [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/Bowtie.scala:98: error: not found: value cmd [ERROR] cmd = builder.build(), [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/Bowtie.scala:99: error: ambiguous reference to overloaded definition, [ERROR] both method files in class CannoliFn of type (pathName: String, filter: org.apache.hadoop.fs.PathFilter)Seq[String] [ERROR] and method files in class CannoliFn of type (pathName: String)Seq[String] [ERROR] match expected type ? [ERROR] files = builder.getFiles() [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/Bowtie2.scala:22: error: object rdd is not a member of package org.bdgenomics.adam [ERROR] import org.bdgenomics.adam.rdd.ADAMContext._ [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/Bowtie2.scala:23: error: object rdd is not a member of package org.bdgenomics.adam [ERROR] import org.bdgenomics.adam.rdd.fragment.{ FragmentDataset, InterleavedFASTQInFormatter } [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/Bowtie2.scala:24: error: object rdd is not a member of package org.bdgenomics.adam [ERROR] import org.bdgenomics.adam.rdd.read.{ AlignmentDataset, AnySAMOutFormatter } [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/Bowtie2.scala:70: error: not found: type FragmentDataset [ERROR] sc: SparkContext) extends CannoliFn[FragmentDataset, AlignmentDataset](sc) { [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/Bowtie2.scala:70: error: not found: type AlignmentDataset [ERROR] sc: SparkContext) extends CannoliFn[FragmentDataset, AlignmentDataset](sc) { [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/Bowtie2.scala:72: error: not found: type AlignmentDataset [ERROR] override def apply(fragments: FragmentDataset): AlignmentDataset = { [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/Bowtie2.scala:72: error: not found: type FragmentDataset [ERROR] override def apply(fragments: FragmentDataset): AlignmentDataset = { [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/Bowtie2.scala:110: error: not found: value InterleavedFASTQInFormatter [ERROR] implicit val tFormatter = InterleavedFASTQInFormatter [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/Bowtie2.scala:111: error: not found: type AnySAMOutFormatter [ERROR] implicit val uFormatter = new AnySAMOutFormatter [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/Bowtie2.scala:113: error: not found: type AlignmentDataset [ERROR] fragments.pipe[Alignment, AlignmentProduct, AlignmentDataset, InterleavedFASTQInFormatter]( [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/Bowtie2.scala:113: error: not found: type InterleavedFASTQInFormatter [ERROR] fragments.pipe[Alignment, AlignmentProduct, AlignmentDataset, InterleavedFASTQInFormatter]( [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/Bowtie2.scala:114: error: not found: value cmd [ERROR] cmd = builder.build(), [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/Bowtie2.scala:115: error: ambiguous reference to overloaded definition, [ERROR] both method files in class CannoliFn of type (pathName: String, filter: org.apache.hadoop.fs.PathFilter)Seq[String] [ERROR] and method files in class CannoliFn of type (pathName: String)Seq[String] [ERROR] match expected type ? [ERROR] files = builder.getFiles() [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/BwaMem.scala:22: error: object rdd is not a member of package org.bdgenomics.adam [ERROR] import org.bdgenomics.adam.rdd.ADAMContext._ [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/BwaMem.scala:23: error: object rdd is not a member of package org.bdgenomics.adam [ERROR] import org.bdgenomics.adam.rdd.fragment.{ FragmentDataset, InterleavedFASTQInFormatter } [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/BwaMem.scala:25: error: object rdd is not a member of package org.bdgenomics.adam [ERROR] import org.bdgenomics.adam.rdd.read.{ AlignmentDataset, AnySAMOutFormatter } [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/BwaMem.scala:67: error: not found: type FragmentDataset [ERROR] sc: SparkContext) extends CannoliFn[FragmentDataset, AlignmentDataset](sc) { [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/BwaMem.scala:67: error: not found: type AlignmentDataset [ERROR] sc: SparkContext) extends CannoliFn[FragmentDataset, AlignmentDataset](sc) { [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/BwaMem.scala:69: error: not found: type AlignmentDataset [ERROR] override def apply(fragments: FragmentDataset): AlignmentDataset = { [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/BwaMem.scala:69: error: not found: type FragmentDataset [ERROR] override def apply(fragments: FragmentDataset): AlignmentDataset = { [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/BwaMem.scala:136: error: not found: value InterleavedFASTQInFormatter [ERROR] implicit val tFormatter = InterleavedFASTQInFormatter [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/BwaMem.scala:137: error: not found: type AnySAMOutFormatter [ERROR] implicit val uFormatter = new AnySAMOutFormatter [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/BwaMem.scala:139: error: not found: type AlignmentDataset [ERROR] val alignments = fragments.pipe[Alignment, AlignmentProduct, AlignmentDataset, InterleavedFASTQInFormatter]( [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/BwaMem.scala:139: error: not found: type InterleavedFASTQInFormatter [ERROR] val alignments = fragments.pipe[Alignment, AlignmentProduct, AlignmentDataset, InterleavedFASTQInFormatter]( [ERROR] ^ [ERROR] /home/jenkins/workspace/cannoli/HADOOP_VERSION/3.2.1/SCALA_VERSION/2.12/SPARK_VERSION/3.0.1/label/ubuntu/core/src/main/scala/org/bdgenomics/cannoli/BwaMem.scala:140: error: not found: value cmd [ERROR] cmd = builder.build(), [ERROR] ^ [ERROR] 306 errors found [INFO] ------------------------------------------------------------------------ [INFO] Reactor Summary for Cannoli_2.12 0.12.0-SNAPSHOT: [INFO] [INFO] Cannoli_2.12 ....................................... SUCCESS [ 2.231 s] [INFO] Cannoli_2.12: Builder .............................. SUCCESS [ 20.030 s] [INFO] Cannoli_2.12: Core ................................. FAILURE [ 5.065 s] [INFO] Cannoli_2.12: CLI .................................. SKIPPED [INFO] Cannoli_2.12: Assembly ............................. SKIPPED [INFO] ------------------------------------------------------------------------ [INFO] BUILD FAILURE [INFO] ------------------------------------------------------------------------ [INFO] Total time: 27.474 s [INFO] Finished at: 2021-03-11T09:39:54-08:00 [INFO] ------------------------------------------------------------------------ [ERROR] Failed to execute goal net.alchim31.maven:scala-maven-plugin:3.2.2:compile (scala-compile-first) on project cannoli-core-spark3_2.12: wrap: org.apache.commons.exec.ExecuteException: Process exited with an error: 1 (Exit value: 1) -> [Help 1] [ERROR] [ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch. [ERROR] Re-run Maven using the -X switch to enable full debug logging. [ERROR] [ERROR] For more information about the errors and possible solutions, please read the following articles: [ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoExecutionException [ERROR] [ERROR] After correcting the problems, you can resume the build with the command [ERROR] mvn <args> -rf :cannoli-core-spark3_2.12 Build step 'Execute shell' marked build as failure Recording test results [Checks API] No suitable checks publisher found. Sending e-mails to: heuermh@gmail.com fnothaft@berkeley.edu ERROR: Couldn't connect to host, port: 127.0.0.1, 25; timeout 60000 com.sun.mail.util.MailConnectException: Couldn't connect to host, port: 127.0.0.1, 25; timeout 60000; nested exception is: java.net.ConnectException: Connection refused (Connection refused) at com.sun.mail.smtp.SMTPTransport.openServer(SMTPTransport.java:2210) at com.sun.mail.smtp.SMTPTransport.protocolConnect(SMTPTransport.java:722) at javax.mail.Service.connect(Service.java:342) at javax.mail.Service.connect(Service.java:222) at javax.mail.Service.connect(Service.java:171) at javax.mail.Transport.send0(Transport.java:230) at javax.mail.Transport.send(Transport.java:100) at hudson.tasks.MailSender.run(MailSender.java:130) at hudson.tasks.Mailer.perform(Mailer.java:176) at hudson.tasks.Mailer.perform(Mailer.java:139) at hudson.tasks.BuildStepMonitor$1.perform(BuildStepMonitor.java:20) at hudson.model.AbstractBuild$AbstractBuildExecution.perform(AbstractBuild.java:741) at hudson.model.AbstractBuild$AbstractBuildExecution.performAllBuildSteps(AbstractBuild.java:690) at hudson.model.Build$BuildExecution.post2(Build.java:186) at hudson.model.AbstractBuild$AbstractBuildExecution.post(AbstractBuild.java:635) at hudson.model.Run.execute(Run.java:1919) at hudson.matrix.MatrixRun.run(MatrixRun.java:153) at hudson.model.ResourceController.execute(ResourceController.java:97) at hudson.model.Executor.run(Executor.java:428) Caused by: java.net.ConnectException: Connection refused (Connection refused) at java.net.PlainSocketImpl.socketConnect(Native Method) at java.net.AbstractPlainSocketImpl.doConnect(AbstractPlainSocketImpl.java:350) at java.net.AbstractPlainSocketImpl.connectToAddress(AbstractPlainSocketImpl.java:206) at java.net.AbstractPlainSocketImpl.connect(AbstractPlainSocketImpl.java:188) at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:392) at java.net.Socket.connect(Socket.java:607) at com.sun.mail.util.SocketFetcher.createSocket(SocketFetcher.java:333) at com.sun.mail.util.SocketFetcher.getSocket(SocketFetcher.java:214) at com.sun.mail.smtp.SMTPTransport.openServer(SMTPTransport.java:2160) ... 18 more Finished: FAILURE