Started 29 days ago
Took 39 sec on amp-jenkins-worker-06

Failed Build #894 (Oct 15, 2019 12:17:27 PM)

PR #528: variant/genotype integration
Changes
  1. Spark 2.4.3 (#505) (commit: 6eba24abd2387bd2c52ad319b34c8a82a904ec50) (detail / githubweb)
  2. Add genotypes to mango-python (#506) (commit: 4e022027c6c26b48d31a8ccbe47684607f4bea2f) (detail / githubweb)
  3. bumped pileup version for mango-cli and mango-viz (commit: 33228e555e2591984a0a9159c970b3a9476bc5aa) (detail / githubweb)
  4. bumped mango-viz requirement, fix for chr prefix (commit: 059459452cfdcc51127409c5e0302ea6273be314) (detail / githubweb)
  5. Files that are not in hdfs or ADAM format bypass Spark (#494) (commit: a989d746c0194ff057d7b366de8be1c6bc92da55) (detail / githubweb)
  6. bump python version to 0.0.3a1 (#509) (commit: 6c1b6daebfc404ed1380f2cf5861deed8eb02b79) (detail / githubweb)
  7. Updates for EMR 5.24.0 (#510) (commit: 4987a71839789ea7bbb6f70dcbe99da8a09e18c1) (detail / githubweb)
  8. Jenkins traps for clean exit (#511) (commit: 6289bf73639e44a0a8496d26e89a9d44a53d3fd2) (detail / githubweb)
  9. Bump python (#512) (commit: 2876f04521a8de122d1842ecc1cdd0ccdc562e72) (detail / githubweb)
  10. bumped python versions to 0.0.3 (commit: 379928660233d4c02eb541147f235d63e0c302c8) (detail / githubweb)
  11. fixed mango-cli build to add resources after npm install (commit: 22ee79222357a0a6573682b0908b5d10bb04c5e6) (detail / githubweb)
  12. bumped deploy version for SNAPSHOTs (commit: 60dcc667a5e8ad5af0e7a589c6a1623655b878d2) (detail / githubweb)
  13. Fix npm buildgoal (#515) (commit: 90890d882f405ebf04af260d79b370fa3ff1738c) (detail / githubweb)
  14. updated release documentation (commit: 0bff18676e4ed366c0465cc04b165ae16f30cf4e) (detail / githubweb)
  15. updated release scripts for optional python (commit: 606ff91ecc0407ce91a05b47d8c6b32ef4922de2) (detail / githubweb)
  16. rollback branch name update in release scripts (commit: 9cd98315e3dbd24b31905076bcfca4b37f2702ba) (detail / githubweb)
  17. Modifying pom.xml files for new development after 0.0.3 release. (commit: c43a157cad96863bd18d7df308cfe8feaa9d8c11) (detail / githubweb)
  18. Address reviewers comments (commit: 8b4d02c3d8976322ac659b6f48e324dddd243e75) (detail / githubweb)
  19. fixed typos (commit: 2fe449032c47df036be24d3e62ae195f446e183c) (detail / githubweb)
  20. change 'maven package' to 'mvn package' (commit: 3ae89fbbd7d649e09d6719225f7e451d8bfc7f88) (detail / githubweb)
  21. Minor doc fixes (#520) (commit: 6665c0cec7694d8d7351ae9bae67a451e2998f36) (detail / githubweb)
  22. docker doc fixes (#521) (commit: c699601d76793129b7f6c37a302159909df85843) (detail / githubweb)
  23. add pileup.js paper reference (#522) (commit: 1d8731580319fd2216a9ebd02210e225c9d9b761) (detail / githubweb)
  24. Restructure GCE instructions for consistency with AWS instructions (commit: 83ee13f8425d9b2cd01ed94b9ecbd3e0b915866a) (detail / githubweb)
  25. minor doc fixes (#525) (commit: cdb9b13a728109e624cb561da57d56a4a6b73f10) (detail / githubweb)
  26. Update ADAM dependency version to 0.28.0. (#518) (commit: 2d4ab8be941459a0c251bc8fa56c4e6f1b5f4cf7) (detail / githubweb)
  27. Abhim/mangoupdate1 (#527) (commit: ad046a8ae51aa3f297305e74976896b0d2a61628) (detail / githubweb)
  28. initial bed to json feature (commit: b265cfd92437da5028a1a6d32be65430558f1072) (detail / githubweb)
  29. parses from dataframe instead of json (commit: f521568a2c49b9cb7d7c7bdb41ad7599ccd126c4) (detail / githubweb)
  30. dataframe with mango visualization (commit: 1a954c083b63b66d97a4cbac0e58941f7b9d22ca) (detail / githubweb)
  31. Restructure PR (commit: 8be9930012f64c7220467d2562e3e9e9eb335327) (detail / githubweb)
  32. updated io module with bedfile implementations (commit: 0a1abfaabc0587386528a80efa10023b32f3854b) (detail / githubweb)
  33. sources.py changes (commit: 63d5929e40edcb9ef73b70168d9614b8d32db307) (detail / githubweb)
  34. sources.py edit (commit: 2d524c91f982c4711e364fd62821a39fd8abc37b) (detail / githubweb)
  35. extended dataframe to include attribute that specifies pileup (commit: 0975d122d6c620d61083c2933d0f659a81f1421e) (detail / githubweb)
  36. added header and unit tests (commit: 121fe756d85dcc097790ef562f85905330ea97ee) (detail / githubweb)
  37. adding modin with mango notebook (commit: 6c876c3f875bf835f43f53ac6e35e6265e7669a5) (detail / githubweb)
  38. updated unit tests (commit: b542190d2975227f18011280032e7041b0adfed6) (detail / githubweb)
  39. added visualiztion unit tests, updated io.py --> readers.py (commit: 370845fe529fd204baf0cdcd8aca9ae5b9c0affd) (detail / githubweb)
  40. updated pileup-tutorial's feature example (commit: 9863b5c6c26fdad06d3f328f931e1f348fc6b0b3) (detail / githubweb)
  41. initial vcf io implemention (commit: 2aa5d749971c4681cda59956e24594b31ab23f9f) (detail / githubweb)
  42. vcf integration into io module--> test cases pending (commit: 6e856aa7334eec250634226432daa2ae1a462106) (detail / githubweb)
  43. expanded dataframe to include FORMAT and samples (commit: cb7e5c9129d0b44c2180560961576745f7e6a92f) (detail / githubweb)
  44. VCF genotype implementation (commit: 460b34d88ad296e4076923ba78faf6a5d9a3182d) (detail / githubweb)
  45. fixed json issue and updated vcf unit test (commit: df1dffe10ec62a69892f8b9a22a5b36594dc323e) (detail / githubweb)

GitHub pull request #528 of commit df1dffe10ec62a69892f8b9a22a5b36594dc323e.

Revision: df1dffe10ec62a69892f8b9a22a5b36594dc323e
  • origin/pr/528/head

Configurations

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