Changes

Summary

  1. #581 Update adam dependency version to 0.35.0  (#584) (commit: 0cfc6f3) (details)
Commit 0cfc6f3eba265b9d32565628c62cfbb266986de0 by noreply
#581 Update adam dependency version to 0.35.0  (#584)

* Update adam dependency version to 0.35.0.

* downgrade maven-resources: broken symlink function

Co-authored-by: Michael L Heuer <heuermh@acm.org>
(commit: 0cfc6f3)
The file was modifiedmango-core/src/test/scala/org/bdgenomics/mango/models/VariantContextMaterializationSuite.scala (diff)
The file was modifiedmango-python/bdgenomics/mango/alignments.py (diff)
The file was modifiedexample-files/notebooks/mango-python-coverage.ipynb (diff)
The file was modifiedmango-core/src/main/scala/org/bdgenomics/mango/io/BedReader.scala (diff)
The file was modifiedmango-core/src/main/scala/org/bdgenomics/mango/io/GenomicReader.scala (diff)
The file was modifiedscripts/jenkins-deploy (diff)
The file was modifiedmango-core/src/test/scala/org/bdgenomics/mango/io/BedReaderSuite.scala (diff)
The file was modifiedexample-files/notebooks/aws-1000genomes.ipynb (diff)
The file was modifiedmango-python/bdgenomics/mango/features.py (diff)
The file was modifiedmango-core/src/main/scala/org/bdgenomics/mango/models/FeatureMaterialization.scala (diff)
The file was modifiedmango-core/src/main/scala/org/bdgenomics/mango/models/VariantContextMaterialization.scala (diff)
The file was modifiedexample-files/notebooks/mango-python-alignment.ipynb (diff)
The file was modifiedscripts/release/release.sh (diff)
The file was modifiedmango-core/src/test/scala/org/bdgenomics/mango/io/BamReaderSuite.scala (diff)
The file was modifiedmango-python/bdgenomics/mango/genotypes.py (diff)
The file was modifiedmango-core/src/test/scala/org/bdgenomics/mango/converters/GA4GHutilSuite.scala (diff)
The file was modifiedmango-core/src/main/scala/org/bdgenomics/mango/io/BamReader.scala (diff)
The file was modifiedpom.xml (diff)
The file was modifiedmango-core/src/test/scala/org/bdgenomics/mango/io/VcfReaderSuite.scala (diff)
The file was modifiedmango-core/src/main/scala/org/bdgenomics/mango/serialization/MangoKryoRegistrator.scala (diff)
The file was modifiedmango-python/requirements.txt (diff)
The file was modifiedmango-core/src/main/scala/org/bdgenomics/mango/converters/GA4GHutil.scala (diff)
The file was modifiedmango-core/src/main/scala/org/bdgenomics/mango/io/VcfReader.scala (diff)
The file was modifiedmango-core/src/main/scala/org/bdgenomics/mango/models/AlignmentMaterialization.scala (diff)
The file was modifiedmango-python/bdgenomics/mango/coverage.py (diff)
The file was modifiedmango-python/bdgenomics/mango/variants.py (diff)
The file was modifiedscripts/jenkins-test (diff)
The file was modifiedmango-core/src/test/scala/org/bdgenomics/mango/models/AlignmentMaterializationSuite.scala (diff)