FailedConsole Output

Skipping 909 KB.. Full Log
estIdIx9Su/deleteMePleaseThisIsNoLongerNeeded/mango-cli/target/appassembler/repo/org/eclipse/jetty/jetty-io/9.4.15.v20190215/jetty-io-9.4.15.v20190215.jar
[INFO] Installing artifact /home/jenkins/.m2/repository/org/eclipse/jetty/jetty-webapp/9.4.15.v20190215/jetty-webapp-9.4.15.v20190215.jar to /tmp/mangoTestIdIx9Su/deleteMePleaseThisIsNoLongerNeeded/mango-cli/target/appassembler/repo/org/eclipse/jetty/jetty-webapp/9.4.15.v20190215/jetty-webapp-9.4.15.v20190215.jar
[INFO] Installing artifact /home/jenkins/.m2/repository/org/eclipse/jetty/jetty-xml/9.4.15.v20190215/jetty-xml-9.4.15.v20190215.jar to /tmp/mangoTestIdIx9Su/deleteMePleaseThisIsNoLongerNeeded/mango-cli/target/appassembler/repo/org/eclipse/jetty/jetty-xml/9.4.15.v20190215/jetty-xml-9.4.15.v20190215.jar
[INFO] Installing artifact /home/jenkins/.m2/repository/org/eclipse/jetty/jetty-servlet/9.4.15.v20190215/jetty-servlet-9.4.15.v20190215.jar to /tmp/mangoTestIdIx9Su/deleteMePleaseThisIsNoLongerNeeded/mango-cli/target/appassembler/repo/org/eclipse/jetty/jetty-servlet/9.4.15.v20190215/jetty-servlet-9.4.15.v20190215.jar
[INFO] Installing artifact /home/jenkins/.m2/repository/org/eclipse/jetty/jetty-security/9.4.15.v20190215/jetty-security-9.4.15.v20190215.jar to /tmp/mangoTestIdIx9Su/deleteMePleaseThisIsNoLongerNeeded/mango-cli/target/appassembler/repo/org/eclipse/jetty/jetty-security/9.4.15.v20190215/jetty-security-9.4.15.v20190215.jar
[INFO] Installing artifact /home/jenkins/.m2/repository/org/scala-lang/scala-reflect/2.11.7/scala-reflect-2.11.7.jar to /tmp/mangoTestIdIx9Su/deleteMePleaseThisIsNoLongerNeeded/mango-cli/target/appassembler/repo/org/scala-lang/scala-reflect/2.11.7/scala-reflect-2.11.7.jar
[INFO] Installing artifact /home/jenkins/.m2/repository/org/scala-lang/modules/scala-xml_2.11/1.0.2/scala-xml_2.11-1.0.2.jar to /tmp/mangoTestIdIx9Su/deleteMePleaseThisIsNoLongerNeeded/mango-cli/target/appassembler/repo/org/scala-lang/modules/scala-xml_2.11/1.0.2/scala-xml_2.11-1.0.2.jar
[INFO] Installing artifact /home/jenkins/.m2/repository/org/scalatra/scalatra_2.11/2.4.1/scalatra_2.11-2.4.1.jar to /tmp/mangoTestIdIx9Su/deleteMePleaseThisIsNoLongerNeeded/mango-cli/target/appassembler/repo/org/scalatra/scalatra_2.11/2.4.1/scalatra_2.11-2.4.1.jar
[INFO] Installing artifact /home/jenkins/.m2/repository/org/scalatra/scalatra-common_2.11/2.4.1/scalatra-common_2.11-2.4.1.jar to /tmp/mangoTestIdIx9Su/deleteMePleaseThisIsNoLongerNeeded/mango-cli/target/appassembler/repo/org/scalatra/scalatra-common_2.11/2.4.1/scalatra-common_2.11-2.4.1.jar
[INFO] Installing artifact /home/jenkins/.m2/repository/org/clapper/grizzled-slf4j_2.11/1.0.2/grizzled-slf4j_2.11-1.0.2.jar to /tmp/mangoTestIdIx9Su/deleteMePleaseThisIsNoLongerNeeded/mango-cli/target/appassembler/repo/org/clapper/grizzled-slf4j_2.11/1.0.2/grizzled-slf4j_2.11-1.0.2.jar
[INFO] Installing artifact /home/jenkins/.m2/repository/org/scalatra/rl/rl_2.11/0.4.10/rl_2.11-0.4.10.jar to /tmp/mangoTestIdIx9Su/deleteMePleaseThisIsNoLongerNeeded/mango-cli/target/appassembler/repo/org/scalatra/rl/rl_2.11/0.4.10/rl_2.11-0.4.10.jar
[INFO] Installing artifact /home/jenkins/.m2/repository/com/googlecode/juniversalchardet/juniversalchardet/1.0.3/juniversalchardet-1.0.3.jar to /tmp/mangoTestIdIx9Su/deleteMePleaseThisIsNoLongerNeeded/mango-cli/target/appassembler/repo/com/googlecode/juniversalchardet/juniversalchardet/1.0.3/juniversalchardet-1.0.3.jar
[INFO] Installing artifact /home/jenkins/.m2/repository/eu/medsea/mimeutil/mime-util/2.1.3/mime-util-2.1.3.jar to /tmp/mangoTestIdIx9Su/deleteMePleaseThisIsNoLongerNeeded/mango-cli/target/appassembler/repo/eu/medsea/mimeutil/mime-util/2.1.3/mime-util-2.1.3.jar
[INFO] Installing artifact /home/jenkins/.m2/repository/joda-time/joda-time/2.9.1/joda-time-2.9.1.jar to /tmp/mangoTestIdIx9Su/deleteMePleaseThisIsNoLongerNeeded/mango-cli/target/appassembler/repo/joda-time/joda-time/2.9.1/joda-time-2.9.1.jar
[INFO] Installing artifact /home/jenkins/.m2/repository/org/joda/joda-convert/1.8.1/joda-convert-1.8.1.jar to /tmp/mangoTestIdIx9Su/deleteMePleaseThisIsNoLongerNeeded/mango-cli/target/appassembler/repo/org/joda/joda-convert/1.8.1/joda-convert-1.8.1.jar
[INFO] Installing artifact /home/jenkins/.m2/repository/org/scala-lang/modules/scala-parser-combinators_2.11/1.0.4/scala-parser-combinators_2.11-1.0.4.jar to /tmp/mangoTestIdIx9Su/deleteMePleaseThisIsNoLongerNeeded/mango-cli/target/appassembler/repo/org/scala-lang/modules/scala-parser-combinators_2.11/1.0.4/scala-parser-combinators_2.11-1.0.4.jar
[INFO] Installing artifact /home/jenkins/.m2/repository/org/scalatra/scalate/scalate-core_2.11/1.8.0/scalate-core_2.11-1.8.0.jar to /tmp/mangoTestIdIx9Su/deleteMePleaseThisIsNoLongerNeeded/mango-cli/target/appassembler/repo/org/scalatra/scalate/scalate-core_2.11/1.8.0/scalate-core_2.11-1.8.0.jar
[INFO] Installing artifact /home/jenkins/.m2/repository/org/scala-lang/scala-compiler/2.11.8/scala-compiler-2.11.8.jar to /tmp/mangoTestIdIx9Su/deleteMePleaseThisIsNoLongerNeeded/mango-cli/target/appassembler/repo/org/scala-lang/scala-compiler/2.11.8/scala-compiler-2.11.8.jar
[INFO] Installing artifact /home/jenkins/.m2/repository/org/scalatra/scalate/scalate-util_2.11/1.8.0/scalate-util_2.11-1.8.0.jar to /tmp/mangoTestIdIx9Su/deleteMePleaseThisIsNoLongerNeeded/mango-cli/target/appassembler/repo/org/scalatra/scalate/scalate-util_2.11/1.8.0/scalate-util_2.11-1.8.0.jar
[INFO] Installing artifact /tmp/mangoTestIdIx9Su/deleteMePleaseThisIsNoLongerNeeded/mango-core/target/mango-core-0.0.3-SNAPSHOT.jar to /tmp/mangoTestIdIx9Su/deleteMePleaseThisIsNoLongerNeeded/mango-cli/target/appassembler/repo/org/bdgenomics/mango/mango-core/0.0.3-SNAPSHOT/mango-core-0.0.3-SNAPSHOT.jar
[INFO] Installing artifact /home/jenkins/.m2/repository/com/google/protobuf/protobuf-java/3.0.0-beta-3/protobuf-java-3.0.0-beta-3.jar to /tmp/mangoTestIdIx9Su/deleteMePleaseThisIsNoLongerNeeded/mango-cli/target/appassembler/repo/com/google/protobuf/protobuf-java/3.0.0-beta-3/protobuf-java-3.0.0-beta-3.jar
[INFO] Installing artifact /home/jenkins/.m2/repository/com/google/protobuf/protobuf-java-util/3.0.0-beta-3/protobuf-java-util-3.0.0-beta-3.jar to /tmp/mangoTestIdIx9Su/deleteMePleaseThisIsNoLongerNeeded/mango-cli/target/appassembler/repo/com/google/protobuf/protobuf-java-util/3.0.0-beta-3/protobuf-java-util-3.0.0-beta-3.jar
[INFO] Installing artifact /home/jenkins/.m2/repository/org/ga4gh/ga4gh-schemas/0.6.0a10/ga4gh-schemas-0.6.0a10.jar to /tmp/mangoTestIdIx9Su/deleteMePleaseThisIsNoLongerNeeded/mango-cli/target/appassembler/repo/org/ga4gh/ga4gh-schemas/0.6.0a10/ga4gh-schemas-0.6.0a10.jar
[INFO] Installing artifact /home/jenkins/.m2/repository/org/bdgenomics/convert/convert-ga4gh/0.6.0/convert-ga4gh-0.6.0.jar to /tmp/mangoTestIdIx9Su/deleteMePleaseThisIsNoLongerNeeded/mango-cli/target/appassembler/repo/org/bdgenomics/convert/convert-ga4gh/0.6.0/convert-ga4gh-0.6.0.jar
[INFO] Installing artifact /home/jenkins/.m2/repository/org/bdgenomics/convert/convert-htsjdk/0.6.0/convert-htsjdk-0.6.0.jar to /tmp/mangoTestIdIx9Su/deleteMePleaseThisIsNoLongerNeeded/mango-cli/target/appassembler/repo/org/bdgenomics/convert/convert-htsjdk/0.6.0/convert-htsjdk-0.6.0.jar
[INFO] Installing artifact /home/jenkins/.m2/repository/org/bdgenomics/convert/convert/0.6.0/convert-0.6.0.jar to /tmp/mangoTestIdIx9Su/deleteMePleaseThisIsNoLongerNeeded/mango-cli/target/appassembler/repo/org/bdgenomics/convert/convert/0.6.0/convert-0.6.0.jar
[INFO] Installing artifact /home/jenkins/.m2/repository/org/seqdoop/hadoop-bam/7.9.2/hadoop-bam-7.9.2.jar to /tmp/mangoTestIdIx9Su/deleteMePleaseThisIsNoLongerNeeded/mango-cli/target/appassembler/repo/org/seqdoop/hadoop-bam/7.9.2/hadoop-bam-7.9.2.jar
[INFO] Installing artifact /home/jenkins/.m2/repository/com/github/jsr203hadoop/jsr203hadoop/1.0.3/jsr203hadoop-1.0.3.jar to /tmp/mangoTestIdIx9Su/deleteMePleaseThisIsNoLongerNeeded/mango-cli/target/appassembler/repo/com/github/jsr203hadoop/jsr203hadoop/1.0.3/jsr203hadoop-1.0.3.jar
[INFO] Installing artifact /tmp/mangoTestIdIx9Su/deleteMePleaseThisIsNoLongerNeeded/mango-cli/target/mango-cli-0.0.3-SNAPSHOT.jar to /tmp/mangoTestIdIx9Su/deleteMePleaseThisIsNoLongerNeeded/mango-cli/target/appassembler/repo/org/bdgenomics/mango/mango-cli/0.0.3-SNAPSHOT/mango-cli-0.0.3-SNAPSHOT.jar
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building Mango: Assembly 0.0.3-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ mango-assembly ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ mango-assembly ---
[INFO] 
[INFO] --- git-commit-id-plugin:2.2.1:revision (default) @ mango-assembly ---
[INFO] 
[INFO] --- templating-maven-plugin:1.0.0:filter-sources (filter-src) @ mango-assembly ---
[INFO] Request to add '/tmp/mangoTestIdIx9Su/deleteMePleaseThisIsNoLongerNeeded/mango-assembly/src/main/java-templates' folder. Not added since it does not exist.
[INFO] 
[INFO] --- build-helper-maven-plugin:1.10:add-source (add-source) @ mango-assembly ---
[INFO] Source directory: /tmp/mangoTestIdIx9Su/deleteMePleaseThisIsNoLongerNeeded/mango-assembly/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default) @ mango-assembly ---
[INFO] Modified 0 of 1 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.0.1:resources (default-resources) @ mango-assembly ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /tmp/mangoTestIdIx9Su/deleteMePleaseThisIsNoLongerNeeded/mango-assembly/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ mango-assembly ---
[INFO] /tmp/mangoTestIdIx9Su/deleteMePleaseThisIsNoLongerNeeded/mango-assembly/src/main/scala:-1: info: compiling
[INFO] Compiling 1 source files to /tmp/mangoTestIdIx9Su/deleteMePleaseThisIsNoLongerNeeded/mango-assembly/target/scala-2.11.12/classes at 1557784250447
[INFO] prepare-compile in 0 s
[INFO] compile in 3 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.5.1:compile (default-compile) @ mango-assembly ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- build-helper-maven-plugin:1.10:add-test-source (add-test-source) @ mango-assembly ---
[INFO] Test Source directory: /tmp/mangoTestIdIx9Su/deleteMePleaseThisIsNoLongerNeeded/mango-assembly/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.0.1:testResources (default-testResources) @ mango-assembly ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /tmp/mangoTestIdIx9Su/deleteMePleaseThisIsNoLongerNeeded/mango-assembly/src/test/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ mango-assembly ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-compiler-plugin:3.5.1:testCompile (default-testCompile) @ mango-assembly ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-surefire-plugin:2.19.1:test (default-test) @ mango-assembly ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- maven-jar-plugin:3.0.0:jar (default-jar) @ mango-assembly ---
[INFO] Building jar: /tmp/mangoTestIdIx9Su/deleteMePleaseThisIsNoLongerNeeded/mango-assembly/target/mango-assembly-0.0.3-SNAPSHOT.jar
[INFO] 
[INFO] --- maven-shade-plugin:3.1.0:shade (default) @ mango-assembly ---
[INFO] Including org.bdgenomics.mango:mango-cli:jar:0.0.3-SNAPSHOT in the shaded jar.
[INFO] Including com.esotericsoftware.kryo:kryo:jar:2.24.0 in the shaded jar.
[INFO] Including com.esotericsoftware.minlog:minlog:jar:1.2 in the shaded jar.
[INFO] Including org.objenesis:objenesis:jar:2.1 in the shaded jar.
[INFO] Including com.github.samtools:htsjdk:jar:2.16.1 in the shaded jar.
[INFO] Including org.apache.commons:commons-jexl:jar:2.1.1 in the shaded jar.
[INFO] Including commons-logging:commons-logging:jar:1.1.1 in the shaded jar.
[INFO] Including org.xerial.snappy:snappy-java:jar:1.0.5 in the shaded jar.
[INFO] Including org.apache.commons:commons-compress:jar:1.4.1 in the shaded jar.
[INFO] Including org.tukaani:xz:jar:1.5 in the shaded jar.
[INFO] Including gov.nih.nlm.ncbi:ngs-java:jar:2.9.0 in the shaded jar.
[INFO] Including it.unimi.dsi:fastutil:jar:6.6.5 in the shaded jar.
[INFO] Including net.liftweb:lift-json_2.11:jar:3.0.1 in the shaded jar.
[INFO] Including org.scala-lang:scala-library:jar:2.11.7 in the shaded jar.
[INFO] Including org.scala-lang:scalap:jar:2.11.7 in the shaded jar.
[INFO] Including com.thoughtworks.paranamer:paranamer:jar:2.8 in the shaded jar.
[INFO] Including org.apache.avro:avro:jar:1.8.2 in the shaded jar.
[INFO] Including org.codehaus.jackson:jackson-core-asl:jar:1.9.13 in the shaded jar.
[INFO] Including org.codehaus.jackson:jackson-mapper-asl:jar:1.9.13 in the shaded jar.
[INFO] Including org.slf4j:slf4j-api:jar:1.7.7 in the shaded jar.
[INFO] Including org.apache.parquet:parquet-avro:jar:1.8.1 in the shaded jar.
[INFO] Including org.apache.parquet:parquet-scala_2.10:jar:1.8.3 in the shaded jar.
[INFO] Including org.apache.parquet:parquet-column:jar:1.8.3 in the shaded jar.
[INFO] Including org.apache.parquet:parquet-common:jar:1.8.3 in the shaded jar.
[INFO] Including org.apache.parquet:parquet-encoding:jar:1.8.3 in the shaded jar.
[INFO] Including org.apache.spark:spark-core_2.11:jar:2.3.3 in the shaded jar.
[INFO] Including org.apache.avro:avro-mapred:jar:hadoop2:1.7.7 in the shaded jar.
[INFO] Including org.apache.avro:avro-ipc:jar:1.7.7 in the shaded jar.
[INFO] Including org.apache.avro:avro-ipc:jar:tests:1.7.7 in the shaded jar.
[INFO] Including com.twitter:chill_2.11:jar:0.8.4 in the shaded jar.
[INFO] Including com.esotericsoftware:kryo-shaded:jar:3.0.3 in the shaded jar.
[INFO] Including com.esotericsoftware:minlog:jar:1.3.0 in the shaded jar.
[INFO] Including com.twitter:chill-java:jar:0.8.4 in the shaded jar.
[INFO] Including org.apache.xbean:xbean-asm5-shaded:jar:4.4 in the shaded jar.
[INFO] Including org.apache.spark:spark-launcher_2.11:jar:2.3.3 in the shaded jar.
[INFO] Including org.apache.spark:spark-kvstore_2.11:jar:2.3.3 in the shaded jar.
[INFO] Including org.fusesource.leveldbjni:leveldbjni-all:jar:1.8 in the shaded jar.
[INFO] Including com.fasterxml.jackson.core:jackson-core:jar:2.6.7 in the shaded jar.
[INFO] Including com.fasterxml.jackson.core:jackson-annotations:jar:2.6.7 in the shaded jar.
[INFO] Including org.apache.spark:spark-network-common_2.11:jar:2.3.3 in the shaded jar.
[INFO] Including org.apache.spark:spark-network-shuffle_2.11:jar:2.3.3 in the shaded jar.
[INFO] Including org.apache.spark:spark-unsafe_2.11:jar:2.3.3 in the shaded jar.
[INFO] Including net.java.dev.jets3t:jets3t:jar:0.9.4 in the shaded jar.
[INFO] Including commons-codec:commons-codec:jar:1.12 in the shaded jar.
[INFO] Including javax.activation:activation:jar:1.1.1 in the shaded jar.
[INFO] Including org.bouncycastle:bcprov-jdk15on:jar:1.52 in the shaded jar.
[INFO] Including com.jamesmurty.utils:java-xmlbuilder:jar:1.1 in the shaded jar.
[INFO] Including net.iharder:base64:jar:2.3.8 in the shaded jar.
[INFO] Including org.apache.curator:curator-recipes:jar:2.6.0 in the shaded jar.
[INFO] Including org.apache.curator:curator-framework:jar:2.6.0 in the shaded jar.
[INFO] Including org.apache.curator:curator-client:jar:2.6.0 in the shaded jar.
[INFO] Including org.apache.zookeeper:zookeeper:jar:3.4.6 in the shaded jar.
[INFO] Including javax.servlet:javax.servlet-api:jar:3.1.0 in the shaded jar.
[INFO] Including org.apache.commons:commons-lang3:jar:3.5 in the shaded jar.
[INFO] Including org.apache.commons:commons-math3:jar:3.4.1 in the shaded jar.
[INFO] Including com.google.code.findbugs:jsr305:jar:1.3.9 in the shaded jar.
[INFO] Including org.slf4j:jul-to-slf4j:jar:1.7.16 in the shaded jar.
[INFO] Including org.slf4j:jcl-over-slf4j:jar:1.7.16 in the shaded jar.
[INFO] Including log4j:log4j:jar:1.2.17 in the shaded jar.
[INFO] Including org.slf4j:slf4j-log4j12:jar:1.7.16 in the shaded jar.
[INFO] Including com.ning:compress-lzf:jar:1.0.3 in the shaded jar.
[INFO] Including org.lz4:lz4-java:jar:1.4.0 in the shaded jar.
[INFO] Including com.github.luben:zstd-jni:jar:1.3.2-2 in the shaded jar.
[INFO] Including org.roaringbitmap:RoaringBitmap:jar:0.5.11 in the shaded jar.
[INFO] Including commons-net:commons-net:jar:2.2 in the shaded jar.
[INFO] Including org.json4s:json4s-jackson_2.11:jar:3.2.11 in the shaded jar.
[INFO] Including org.json4s:json4s-core_2.11:jar:3.2.11 in the shaded jar.
[INFO] Including org.json4s:json4s-ast_2.11:jar:3.2.11 in the shaded jar.
[INFO] Including org.glassfish.jersey.core:jersey-client:jar:2.22.2 in the shaded jar.
[INFO] Including javax.ws.rs:javax.ws.rs-api:jar:2.0.1 in the shaded jar.
[INFO] Including org.glassfish.hk2:hk2-api:jar:2.4.0-b34 in the shaded jar.
[INFO] Including org.glassfish.hk2:hk2-utils:jar:2.4.0-b34 in the shaded jar.
[INFO] Including org.glassfish.hk2.external:aopalliance-repackaged:jar:2.4.0-b34 in the shaded jar.
[INFO] Including org.glassfish.hk2.external:javax.inject:jar:2.4.0-b34 in the shaded jar.
[INFO] Including org.glassfish.hk2:hk2-locator:jar:2.4.0-b34 in the shaded jar.
[INFO] Including org.javassist:javassist:jar:3.18.1-GA in the shaded jar.
[INFO] Including org.glassfish.jersey.core:jersey-common:jar:2.22.2 in the shaded jar.
[INFO] Including javax.annotation:javax.annotation-api:jar:1.2 in the shaded jar.
[INFO] Including org.glassfish.jersey.bundles.repackaged:jersey-guava:jar:2.22.2 in the shaded jar.
[INFO] Including org.glassfish.hk2:osgi-resource-locator:jar:1.0.1 in the shaded jar.
[INFO] Including org.glassfish.jersey.core:jersey-server:jar:2.22.2 in the shaded jar.
[INFO] Including org.glassfish.jersey.media:jersey-media-jaxb:jar:2.22.2 in the shaded jar.
[INFO] Including javax.validation:validation-api:jar:1.1.0.Final in the shaded jar.
[INFO] Including org.glassfish.jersey.containers:jersey-container-servlet:jar:2.22.2 in the shaded jar.
[INFO] Including org.glassfish.jersey.containers:jersey-container-servlet-core:jar:2.22.2 in the shaded jar.
[INFO] Including io.netty:netty-all:jar:4.1.17.Final in the shaded jar.
[INFO] Including io.netty:netty:jar:3.9.9.Final in the shaded jar.
[INFO] Including com.clearspring.analytics:stream:jar:2.7.0 in the shaded jar.
[INFO] Including io.dropwizard.metrics:metrics-core:jar:3.1.5 in the shaded jar.
[INFO] Including io.dropwizard.metrics:metrics-jvm:jar:3.1.5 in the shaded jar.
[INFO] Including io.dropwizard.metrics:metrics-json:jar:3.1.5 in the shaded jar.
[INFO] Including io.dropwizard.metrics:metrics-graphite:jar:3.1.5 in the shaded jar.
[INFO] Including com.fasterxml.jackson.core:jackson-databind:jar:2.6.7.1 in the shaded jar.
[INFO] Including com.fasterxml.jackson.module:jackson-module-scala_2.11:jar:2.6.7.1 in the shaded jar.
[INFO] Including org.scala-lang:scala-reflect:jar:2.11.8 in the shaded jar.
[INFO] Including com.fasterxml.jackson.module:jackson-module-paranamer:jar:2.7.9 in the shaded jar.
[INFO] Including org.apache.ivy:ivy:jar:2.4.0 in the shaded jar.
[INFO] Including oro:oro:jar:2.0.8 in the shaded jar.
[INFO] Including net.razorvine:pyrolite:jar:4.13 in the shaded jar.
[INFO] Including net.sf.py4j:py4j:jar:0.10.7 in the shaded jar.
[INFO] Including org.apache.spark:spark-tags_2.11:jar:2.3.3 in the shaded jar.
[INFO] Including org.apache.commons:commons-crypto:jar:1.0.0 in the shaded jar.
[INFO] Including org.spark-project.spark:unused:jar:1.0.0 in the shaded jar.
[INFO] Including org.bdgenomics.adam:adam-cli-spark2_2.11:jar:0.26.0 in the shaded jar.
[INFO] Including org.bdgenomics.adam:adam-apis-spark2_2.11:jar:0.26.0 in the shaded jar.
[INFO] Including args4j:args4j:jar:2.0.31 in the shaded jar.
[INFO] Including net.codingwell:scala-guice_2.11:jar:4.2.1 in the shaded jar.
[INFO] Including com.google.inject:guice:jar:4.2.0 in the shaded jar.
[INFO] Including javax.inject:javax.inject:jar:1 in the shaded jar.
[INFO] Including aopalliance:aopalliance:jar:1.0 in the shaded jar.
[INFO] Including org.bdgenomics.adam:adam-core-spark2_2.11:jar:0.26.0 in the shaded jar.
[INFO] Including commons-io:commons-io:jar:2.6 in the shaded jar.
[INFO] Including org.apache.httpcomponents:httpclient:jar:4.5.2 in the shaded jar.
[INFO] Including org.apache.httpcomponents:httpcore:jar:4.4.4 in the shaded jar.
[INFO] Including com.google.guava:guava:jar:27.0-jre in the shaded jar.
[INFO] Including com.google.guava:failureaccess:jar:1.0 in the shaded jar.
[INFO] Including com.google.guava:listenablefuture:jar:9999.0-empty-to-avoid-conflict-with-guava in the shaded jar.
[INFO] Including org.checkerframework:checker-qual:jar:2.5.2 in the shaded jar.
[INFO] Including com.google.errorprone:error_prone_annotations:jar:2.2.0 in the shaded jar.
[INFO] Including com.google.j2objc:j2objc-annotations:jar:1.1 in the shaded jar.
[INFO] Including org.codehaus.mojo:animal-sniffer-annotations:jar:1.17 in the shaded jar.
[INFO] Including org.bdgenomics.adam:adam-codegen-spark2_2.11:jar:0.26.0 in the shaded jar.
[INFO] Including org.bdgenomics.bdg-formats:bdg-formats:jar:0.12.0 in the shaded jar.
[INFO] Including org.bdgenomics.utils:utils-cli-spark2_2.11:jar:0.2.13 in the shaded jar.
[INFO] Including org.bdgenomics.utils:utils-misc-spark2_2.11:jar:0.2.13 in the shaded jar.
[INFO] Including org.bdgenomics.utils:utils-intervalrdd-spark2_2.11:jar:0.2.13 in the shaded jar.
[INFO] Including org.bdgenomics.utils:utils-io-spark2_2.11:jar:0.2.13 in the shaded jar.
[INFO] Including org.bdgenomics.utils:utils-metrics-spark2_2.11:jar:0.2.13 in the shaded jar.
[INFO] Including com.netflix.servo:servo-core:jar:0.12.12 in the shaded jar.
[INFO] Including org.eclipse.jetty:jetty-server:jar:9.4.15.v20190215 in the shaded jar.
[INFO] Including org.eclipse.jetty:jetty-http:jar:9.4.15.v20190215 in the shaded jar.
[INFO] Including org.eclipse.jetty:jetty-util:jar:9.4.15.v20190215 in the shaded jar.
[INFO] Including org.eclipse.jetty:jetty-io:jar:9.4.15.v20190215 in the shaded jar.
[INFO] Including org.eclipse.jetty:jetty-webapp:jar:9.4.15.v20190215 in the shaded jar.
[INFO] Including org.eclipse.jetty:jetty-xml:jar:9.4.15.v20190215 in the shaded jar.
[INFO] Including org.eclipse.jetty:jetty-servlet:jar:9.4.15.v20190215 in the shaded jar.
[INFO] Including org.eclipse.jetty:jetty-security:jar:9.4.15.v20190215 in the shaded jar.
[INFO] Including org.scalatra:scalatra_2.11:jar:2.4.1 in the shaded jar.
[INFO] Including org.scalatra:scalatra-common_2.11:jar:2.4.1 in the shaded jar.
[INFO] Including org.clapper:grizzled-slf4j_2.11:jar:1.0.2 in the shaded jar.
[INFO] Including org.scalatra.rl:rl_2.11:jar:0.4.10 in the shaded jar.
[INFO] Including com.googlecode.juniversalchardet:juniversalchardet:jar:1.0.3 in the shaded jar.
[INFO] Including eu.medsea.mimeutil:mime-util:jar:2.1.3 in the shaded jar.
[INFO] Including joda-time:joda-time:jar:2.9.1 in the shaded jar.
[INFO] Including org.joda:joda-convert:jar:1.8.1 in the shaded jar.
[INFO] Including org.scala-lang.modules:scala-parser-combinators_2.11:jar:1.0.4 in the shaded jar.
[INFO] Including org.scala-lang.modules:scala-xml_2.11:jar:1.0.5 in the shaded jar.
[INFO] Including org.scalatra.scalate:scalate-core_2.11:jar:1.8.0 in the shaded jar.
[INFO] Including org.scala-lang:scala-compiler:jar:2.11.8 in the shaded jar.
[INFO] Including org.scalatra.scalate:scalate-util_2.11:jar:1.8.0 in the shaded jar.
[INFO] Including org.bdgenomics.mango:mango-core:jar:0.0.3-SNAPSHOT in the shaded jar.
[INFO] Including com.google.protobuf:protobuf-java:jar:3.0.0-beta-3 in the shaded jar.
[INFO] Including com.google.protobuf:protobuf-java-util:jar:3.0.0-beta-3 in the shaded jar.
[INFO] Including com.google.code.gson:gson:jar:2.3 in the shaded jar.
[INFO] Including org.ga4gh:ga4gh-schemas:jar:0.6.0a10 in the shaded jar.
[INFO] Including org.bdgenomics.convert:convert-ga4gh:jar:0.6.0 in the shaded jar.
[INFO] Including org.bdgenomics.convert:convert-htsjdk:jar:0.6.0 in the shaded jar.
[INFO] Including org.bdgenomics.convert:convert:jar:0.6.0 in the shaded jar.
[INFO] Including org.seqdoop:hadoop-bam:jar:7.9.2 in the shaded jar.
[INFO] Including com.github.jsr203hadoop:jsr203hadoop:jar:1.0.3 in the shaded jar.
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, adam-cli-spark2_2.11-0.26.0.jar, mango-cli-0.0.3-SNAPSHOT.jar define 130 overlapping classes: 
[WARNING]   - org.bdgenomics.adam.cli.PrintADAMArgs
[WARNING]   - org.bdgenomics.adam.cli.Reads2Coverage$$anonfun$1$$anonfun$apply$1
[WARNING]   - org.bdgenomics.adam.cli.TransformVariants$$anonfun$maybeCoalesce$2
[WARNING]   - org.bdgenomics.adam.cli.FlagStat$
[WARNING]   - org.bdgenomics.adam.cli.TransformAlignments$$anonfun$7
[WARNING]   - org.bdgenomics.adam.cli.TransformVariants$
[WARNING]   - org.bdgenomics.adam.cli.View$$anonfun$getFilter$1$1
[WARNING]   - org.bdgenomics.adam.cli.TransformAlignments$$anonfun$maybeCoalesce$2
[WARNING]   - org.bdgenomics.adam.cli.TransformAlignments$$anonfun$4
[WARNING]   - org.bdgenomics.adam.cli.ADAMMain$$anonfun$1
[WARNING]   - 120 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, jersey-container-servlet-core-2.22.2.jar, mango-cli-0.0.3-SNAPSHOT.jar define 51 overlapping classes: 
[WARNING]   - org.glassfish.jersey.servlet.WebComponent$3
[WARNING]   - org.glassfish.jersey.servlet.WebComponent$WebComponentBinder
[WARNING]   - org.glassfish.jersey.servlet.internal.LocalizationMessages
[WARNING]   - org.glassfish.jersey.servlet.WebConfig
[WARNING]   - org.glassfish.jersey.servlet.spi.FilterUrlMappingsProvider
[WARNING]   - org.glassfish.jersey.servlet.WebComponent$WebComponentBinder$3
[WARNING]   - org.glassfish.jersey.servlet.ServletPropertiesDelegate
[WARNING]   - org.glassfish.jersey.servlet.WebComponent$7
[WARNING]   - org.glassfish.jersey.servlet.internal.ResponseWriter
[WARNING]   - org.glassfish.jersey.servlet.WebAppResourcesScanner$1
[WARNING]   - 41 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, mango-cli-0.0.3-SNAPSHOT.jar, zookeeper-3.4.6.jar define 440 overlapping classes: 
[WARNING]   - org.apache.zookeeper.server.NettyServerCnxn$DumpCommand
[WARNING]   - org.apache.zookeeper.proto.GetMaxChildrenRequest
[WARNING]   - org.apache.jute.XmlInputArchive$XMLParser
[WARNING]   - org.apache.zookeeper.server.NettyServerCnxn$SendBufferWriter
[WARNING]   - org.apache.jute.CsvInputArchive$1
[WARNING]   - org.apache.zookeeper.KeeperException$CodeDeprecated
[WARNING]   - org.apache.zookeeper.server.ZooKeeperServerMXBean
[WARNING]   - org.apache.zookeeper.server.NettyServerCnxn$EnvCommand
[WARNING]   - org.apache.zookeeper.server.quorum.Learner$PacketInFlight
[WARNING]   - org.apache.zookeeper.Op$Check
[WARNING]   - 430 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, paranamer-2.8.jar, mango-cli-0.0.3-SNAPSHOT.jar define 21 overlapping classes: 
[WARNING]   - com.thoughtworks.paranamer.PositionalParanamer
[WARNING]   - com.thoughtworks.paranamer.JavadocParanamer
[WARNING]   - com.thoughtworks.paranamer.BytecodeReadingParanamer
[WARNING]   - com.thoughtworks.paranamer.BytecodeReadingParanamer$Type
[WARNING]   - com.thoughtworks.paranamer.BytecodeReadingParanamer$1
[WARNING]   - com.thoughtworks.paranamer.JavadocParanamer$DirJavadocProvider
[WARNING]   - com.thoughtworks.paranamer.AnnotationParanamer$Jsr330Helper
[WARNING]   - com.thoughtworks.paranamer.BytecodeReadingParanamer$TypeCollector
[WARNING]   - com.thoughtworks.paranamer.AnnotationParanamer
[WARNING]   - com.thoughtworks.paranamer.NullParanamer
[WARNING]   - 11 more...
[WARNING] spark-network-shuffle_2.11-2.3.3.jar, unused-1.0.0.jar, mango-cli-0.0.3-SNAPSHOT.jar, spark-launcher_2.11-2.3.3.jar, spark-tags_2.11-2.3.3.jar, spark-unsafe_2.11-2.3.3.jar, mango-core-0.0.3-SNAPSHOT.jar, spark-kvstore_2.11-2.3.3.jar, spark-network-common_2.11-2.3.3.jar, spark-core_2.11-2.3.3.jar define 1 overlapping classes: 
[WARNING]   - org.apache.spark.unused.UnusedStubClass
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, mango-cli-0.0.3-SNAPSHOT.jar, scala-compiler-2.11.8.jar define 9037 overlapping classes: 
[WARNING]   - scala.tools.nsc.doc.base.CommentFactoryBase$SimpleTagKey
[WARNING]   - scala.tools.jline_embedded.Terminal
[WARNING]   - scala.tools.nsc.Global$$anonfun$scala$tools$nsc$Global$$writeICode$1
[WARNING]   - scala.tools.nsc.backend.opt.ClosureElimination$ClosureElim$$anonfun$analyzeMethod$1$$anonfun$apply$2
[WARNING]   - scala.tools.nsc.typechecker.Typers$Typer$$anonfun$typedCase$2$$anonfun$apply$27
[WARNING]   - scala.tools.nsc.backend.icode.analysis.TypeFlowAnalysis$MTFAGrowable$$anonfun$scala$tools$nsc$backend$icode$analysis$TypeFlowAnalysis$MTFAGrowable$$putOnRadar$1$$anonfun$3
[WARNING]   - scala.tools.nsc.interpreter.ILoop$$anonfun$standardCommands$3
[WARNING]   - scala.tools.nsc.typechecker.Typers$Typer$$anonfun$isReferencedFrom$1
[WARNING]   - scala.tools.nsc.typechecker.Typers$Typer$dyna$
[WARNING]   - scala.tools.nsc.transform.patmat.MatchAnalysis$MatchAnalyzer$NegativeExample$$anonfun$23
[WARNING]   - 9027 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, kryo-shaded-3.0.3.jar, mango-cli-0.0.3-SNAPSHOT.jar, kryo-2.24.0.jar define 193 overlapping classes: 
[WARNING]   - com.esotericsoftware.kryo.serializers.BeanSerializer$1
[WARNING]   - com.esotericsoftware.kryo.Registration
[WARNING]   - com.esotericsoftware.reflectasm.shaded.org.objectweb.asm.Handler
[WARNING]   - com.esotericsoftware.reflectasm.shaded.org.objectweb.asm.ByteVector
[WARNING]   - com.esotericsoftware.reflectasm.shaded.org.objectweb.asm.FieldVisitor
[WARNING]   - com.esotericsoftware.kryo.util.IntMap$Values
[WARNING]   - com.esotericsoftware.kryo.serializers.DefaultSerializers$IntSerializer
[WARNING]   - com.esotericsoftware.kryo.serializers.FieldSerializerUnsafeUtilImpl
[WARNING]   - com.esotericsoftware.kryo.serializers.ObjectField$ObjectIntField
[WARNING]   - com.esotericsoftware.kryo.serializers.JavaSerializer
[WARNING]   - 183 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, adam-codegen-spark2_2.11-0.26.0.jar, mango-cli-0.0.3-SNAPSHOT.jar define 18 overlapping classes: 
[WARNING]   - org.bdgenomics.adam.codegen.DumpSchemasToProjectionEnums$
[WARNING]   - org.bdgenomics.adam.codegen.DumpSchemasToProjectionEnums
[WARNING]   - org.bdgenomics.adam.codegen.DumpSchemasToProduct$$anonfun$getters$1
[WARNING]   - org.bdgenomics.adam.codegen.DumpSchemasToProduct$$anonfun$setters$1
[WARNING]   - org.bdgenomics.adam.codegen.DumpSchemasToProduct$$anonfun$1
[WARNING]   - org.bdgenomics.adam.codegen.DumpSchemasToProduct$$anonfun$apply$1
[WARNING]   - org.bdgenomics.adam.codegen.DumpSchemasToProduct
[WARNING]   - org.bdgenomics.adam.codegen.DumpSchemasToProduct$
[WARNING]   - org.bdgenomics.adam.codegen.DumpSchemasToProduct$$anonfun$fields$1
[WARNING]   - org.bdgenomics.adam.codegen.DumpSchemasToProjectionEnums$$anonfun$fields$1
[WARNING]   - 8 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, mango-cli-0.0.3-SNAPSHOT.jar, jersey-guava-2.22.2.jar define 753 overlapping classes: 
[WARNING]   - jersey.repackaged.com.google.common.collect.AbstractNavigableMap$DescendingMap
[WARNING]   - jersey.repackaged.com.google.common.collect.AbstractMultiset$ElementSet
[WARNING]   - jersey.repackaged.com.google.common.collect.Collections2$OrderedPermutationCollection
[WARNING]   - jersey.repackaged.com.google.common.collect.StandardTable$TableSet
[WARNING]   - jersey.repackaged.com.google.common.base.Splitter
[WARNING]   - jersey.repackaged.com.google.common.util.concurrent.Futures$1$1
[WARNING]   - jersey.repackaged.com.google.common.base.CharMatcher$5
[WARNING]   - jersey.repackaged.com.google.common.collect.SortedMapDifference
[WARNING]   - jersey.repackaged.com.google.common.collect.ImmutableListMultimap
[WARNING]   - jersey.repackaged.com.google.common.cache.LocalCache$AbstractReferenceEntry
[WARNING]   - 743 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, mango-cli-0.0.3-SNAPSHOT.jar, scala-parser-combinators_2.11-1.0.4.jar define 352 overlapping classes: 
[WARNING]   - scala.util.parsing.combinator.lexical.StdLexical$$anonfun$whitespace$1$$anonfun$apply$20$$anonfun$apply$21
[WARNING]   - scala.util.parsing.combinator.ImplicitConversions$$anonfun$flatten5$1
[WARNING]   - scala.util.parsing.combinator.Parsers$$anonfun$rep$1
[WARNING]   - scala.util.parsing.json.Lexer$$anonfun$number$1$$anonfun$apply$16
[WARNING]   - scala.util.parsing.combinator.Parsers$NoSuccess$$anonfun$1
[WARNING]   - scala.util.parsing.combinator.lexical.StdLexical$$anonfun$token$3$$anonfun$apply$3$$anonfun$apply$4
[WARNING]   - scala.util.parsing.combinator.token.StdTokens$class
[WARNING]   - scala.util.parsing.json.Lexer$$anonfun$charSeq$10
[WARNING]   - scala.util.parsing.combinator.Parsers$Parser$$anonfun$$tilde$greater$1
[WARNING]   - scala.util.parsing.combinator.lexical.StdLexical$$anonfun$token$5
[WARNING]   - 342 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, mango-cli-0.0.3-SNAPSHOT.jar, jul-to-slf4j-1.7.16.jar define 1 overlapping classes: 
[WARNING]   - org.slf4j.bridge.SLF4JBridgeHandler
[WARNING] parquet-encoding-1.8.3.jar, mango-core-0.0.3-SNAPSHOT.jar, mango-cli-0.0.3-SNAPSHOT.jar define 184 overlapping classes: 
[WARNING]   - org.apache.parquet.column.values.bitpacking.ByteBitPackingBE$Packer14
[WARNING]   - org.apache.parquet.column.values.bitpacking.ByteBitPackingBE$Packer24
[WARNING]   - org.apache.parquet.column.values.bitpacking.ByteBitPackingLE$Packer10
[WARNING]   - org.apache.parquet.column.values.bitpacking.LemireBitPackingBE$Packer7
[WARNING]   - org.apache.parquet.column.values.bitpacking.ByteBitPackingLE$Packer20
[WARNING]   - org.apache.parquet.column.values.bitpacking.ByteBitPackingLE$Packer7
[WARNING]   - org.apache.parquet.column.values.bitpacking.ByteBitPackingLE$Packer30
[WARNING]   - org.apache.parquet.column.values.bitpacking.ByteBitPackingLE$Packer13
[WARNING]   - org.apache.parquet.column.values.bitpacking.ByteBitPackingLE$Packer23
[WARNING]   - org.apache.parquet.column.values.bitpacking.LemireBitPackingLE$Packer19
[WARNING]   - 174 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, kryo-shaded-3.0.3.jar, mango-cli-0.0.3-SNAPSHOT.jar define 14 overlapping classes: 
[WARNING]   - com.esotericsoftware.kryo.serializers.VersionFieldSerializer
[WARNING]   - com.esotericsoftware.reflectasm.shaded.org.objectweb.asm.Context
[WARNING]   - com.esotericsoftware.kryo.serializers.EnumNameSerializer
[WARNING]   - com.esotericsoftware.kryo.serializers.ClosureSerializer
[WARNING]   - com.esotericsoftware.kryo.pool.KryoPool
[WARNING]   - com.esotericsoftware.kryo.pool.SoftReferenceQueue
[WARNING]   - com.esotericsoftware.kryo.pool.KryoCallback
[WARNING]   - com.esotericsoftware.reflectasm.shaded.org.objectweb.asm.TypePath
[WARNING]   - com.esotericsoftware.reflectasm.PublicConstructorAccess
[WARNING]   - com.esotericsoftware.kryo.pool.KryoPoolQueueImpl
[WARNING]   - 4 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, commons-crypto-1.0.0.jar, mango-cli-0.0.3-SNAPSHOT.jar define 46 overlapping classes: 
[WARNING]   - org.apache.commons.crypto.stream.PositionedCryptoInputStream
[WARNING]   - org.apache.commons.crypto.cipher.OpenSsl
[WARNING]   - org.apache.commons.crypto.random.CryptoRandomFactory$RandomProvider
[WARNING]   - org.apache.commons.crypto.cipher.OpenSsl$AlgorithmMode
[WARNING]   - org.apache.commons.crypto.utils.Utils$DefaultPropertiesHolder
[WARNING]   - org.apache.commons.crypto.Crypto
[WARNING]   - org.apache.commons.crypto.cipher.OpenSsl$Transform
[WARNING]   - org.apache.commons.crypto.OpenSslInfoNative
[WARNING]   - org.apache.commons.crypto.stream.CtrCryptoOutputStream
[WARNING]   - org.apache.commons.crypto.jna.OpenSslNativeJna
[WARNING]   - 36 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, hk2-utils-2.4.0-b34.jar, mango-cli-0.0.3-SNAPSHOT.jar define 80 overlapping classes: 
[WARNING]   - org.glassfish.hk2.utilities.cache.Cache$1
[WARNING]   - org.jvnet.hk2.component.MultiMap$1
[WARNING]   - org.glassfish.hk2.utilities.reflection.internal.ClassReflectionHelperImpl$4
[WARNING]   - org.glassfish.hk2.utilities.cache.internal.WeakCARCacheImpl$1
[WARNING]   - org.glassfish.hk2.utilities.cache.LRUHybridCache
[WARNING]   - org.glassfish.hk2.utilities.cache.LRUCache
[WARNING]   - org.glassfish.hk2.utilities.reflection.internal.ClassReflectionHelperUtilities
[WARNING]   - org.glassfish.hk2.utilities.reflection.ClassReflectionHelper
[WARNING]   - org.glassfish.hk2.utilities.cache.CacheEntry
[WARNING]   - org.glassfish.hk2.utilities.reflection.ReflectionHelper
[WARNING]   - 70 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, bdg-formats-0.12.0.jar, mango-cli-0.0.3-SNAPSHOT.jar define 61 overlapping classes: 
[WARNING]   - org.bdgenomics.formats.avro.VariantCallingAnnotations$Builder
[WARNING]   - org.bdgenomics.formats.avro.VariantAnnotation$Builder
[WARNING]   - org.bdgenomics.formats.avro.Reference$1
[WARNING]   - org.bdgenomics.formats.avro.VariantAnnotationMessage
[WARNING]   - org.bdgenomics.formats.avro.OntologyTerm$1
[WARNING]   - org.bdgenomics.formats.avro.Feature$1
[WARNING]   - org.bdgenomics.formats.avro.AlignmentRecord
[WARNING]   - org.bdgenomics.formats.avro.Sequence$1
[WARNING]   - org.bdgenomics.formats.avro.ReadGroup$Builder
[WARNING]   - org.bdgenomics.formats.avro.ReadGroup
[WARNING]   - 51 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, curator-framework-2.6.0.jar, mango-cli-0.0.3-SNAPSHOT.jar define 167 overlapping classes: 
[WARNING]   - org.apache.curator.framework.imps.TempGetDataBuilderImpl
[WARNING]   - org.apache.curator.framework.imps.GetDataBuilderImpl$2
[WARNING]   - org.apache.curator.framework.imps.CuratorFrameworkImpl$4
[WARNING]   - org.apache.curator.framework.state.ConnectionState
[WARNING]   - org.apache.curator.framework.api.CreateModable
[WARNING]   - org.apache.curator.framework.imps.SetDataBuilderImpl$4
[WARNING]   - org.apache.curator.framework.imps.PathAndBytes
[WARNING]   - org.apache.curator.framework.api.ACLVersionBackgroundPathable
[WARNING]   - org.apache.curator.framework.api.ACLCreateModeBackgroundPathAndBytesable
[WARNING]   - org.apache.curator.framework.listen.ListenerContainer
[WARNING]   - 157 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, scala-guice_2.11-4.2.1.jar, mango-cli-0.0.3-SNAPSHOT.jar define 95 overlapping classes: 
[WARNING]   - net.codingwell.scalaguice.ScalaModule$
[WARNING]   - net.codingwell.scalaguice.ScalaModule$ScalaScopedBindingBuilder
[WARNING]   - net.codingwell.scalaguice.InternalModule$BindingBuilder$$typecreator1$2
[WARNING]   - net.codingwell.scalaguice.InjectorExtensions$ScalaInjector$$typecreator2$1
[WARNING]   - net.codingwell.scalaguice.ScalaModule$ScalaLinkedBindingBuilder$$anon$2$$typecreator1$1
[WARNING]   - net.codingwell.scalaguice.binder.ScopedBindingBuilderProxy
[WARNING]   - net.codingwell.scalaguice.ScalaModule$$anonfun$filterTrace$2
[WARNING]   - net.codingwell.scalaguice.ScalaPrivateModule$ElementBuilder
[WARNING]   - net.codingwell.scalaguice.binder.LinkedBindingBuilderProxy$class
[WARNING]   - net.codingwell.scalaguice.ScalaModule$ScalaAnnotatedBindingBuilder
[WARNING]   - 85 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, mango-cli-0.0.3-SNAPSHOT.jar, json4s-ast_2.11-3.2.11.jar define 68 overlapping classes: 
[WARNING]   - org.json4s.Merge$Mergeable
[WARNING]   - org.json4s.Merge$Mergeable$MergeSyntax
[WARNING]   - org.json4s.Merge$$anonfun$mergeRec$2$1
[WARNING]   - org.json4s.BigDecimalMode$class
[WARNING]   - org.json4s.JsonAST$JBool$
[WARNING]   - org.json4s.JsonAST$JField$
[WARNING]   - org.json4s.DoubleMode$class
[WARNING]   - org.json4s.JsonAST$JString
[WARNING]   - org.json4s.LowPriorityMergeDep$class
[WARNING]   - org.json4s.JsonAST
[WARNING]   - 58 more...
[WARNING] rl_2.11-0.4.10.jar, mango-core-0.0.3-SNAPSHOT.jar, mango-cli-0.0.3-SNAPSHOT.jar define 126 overlapping classes: 
[WARNING]   - rl.StringQueryString$
[WARNING]   - rl.PathOps$class
[WARNING]   - rl.MapQueryString$$anonfun$mkString$1$$anonfun$apply$4
[WARNING]   - rl.EmptyFragment$
[WARNING]   - rl.StringFragment
[WARNING]   - rl.IPv6Address$$anon$3
[WARNING]   - rl.DomainParser$PublicSuffix$
[WARNING]   - rl.DomainParser$PublicSuffix
[WARNING]   - rl.MapQueryString$$anonfun$10
[WARNING]   - rl.EmptyHost$$anon$5
[WARNING]   - 116 more...
[WARNING] scala-reflect-2.11.8.jar, mango-core-0.0.3-SNAPSHOT.jar, mango-cli-0.0.3-SNAPSHOT.jar define 2792 overlapping classes: 
[WARNING]   - scala.reflect.runtime.ReflectionUtils
[WARNING]   - scala.reflect.internal.Types$LazyType
[WARNING]   - scala.reflect.internal.Scopes$LookupInaccessible$
[WARNING]   - scala.reflect.internal.Definitions$DefinitionsClass$$anonfun$newT1NullaryMethod$1
[WARNING]   - scala.reflect.internal.SymbolPairs$Cursor
[WARNING]   - scala.reflect.internal.Types$StaticallyAnnotatedType$
[WARNING]   - scala.reflect.runtime.SynchronizedOps$SynchronizedScope$$anonfun$isEmpty$1
[WARNING]   - scala.reflect.internal.Kinds$TypeConKind$$anonfun$buildState$3
[WARNING]   - scala.reflect.api.StandardLiftables$StandardUnliftableInstances$$anonfun$unliftTuple18$1
[WARNING]   - scala.reflect.runtime.SynchronizedSymbols$SynchronizedClassSymbol
[WARNING]   - 2782 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, parquet-avro-1.8.1.jar, mango-cli-0.0.3-SNAPSHOT.jar define 83 overlapping classes: 
[WARNING]   - org.apache.parquet.avro.AvroRecordConverter$AvroCollectionConverter$1
[WARNING]   - org.apache.parquet.avro.AvroParquetInputFormat
[WARNING]   - org.apache.parquet.avro.AvroRecordConverter$AvroArrayConverter$7
[WARNING]   - org.apache.parquet.avro.AvroConverters$AvroPrimitiveConverter
[WARNING]   - org.apache.parquet.avro.AvroWriteSupport$TwoLevelListWriter
[WARNING]   - org.apache.parquet.avro.AvroConverters$FieldIntegerConverter
[WARNING]   - org.apache.parquet.avro.AvroCompatRecordMaterializer
[WARNING]   - org.apache.parquet.avro.AvroIndexedRecordConverter$AvroArrayConverter$1
[WARNING]   - org.apache.parquet.avro.AvroWriteSupport$ListWriter
[WARNING]   - org.apache.parquet.avro.AvroConverters$FieldByteBufferConverter
[WARNING]   - 73 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, minlog-1.2.jar, minlog-1.3.0.jar, mango-cli-0.0.3-SNAPSHOT.jar define 2 overlapping classes: 
[WARNING]   - com.esotericsoftware.minlog.Log
[WARNING]   - com.esotericsoftware.minlog.Log$Logger
[WARNING] error_prone_annotations-2.2.0.jar, mango-core-0.0.3-SNAPSHOT.jar, mango-cli-0.0.3-SNAPSHOT.jar define 22 overlapping classes: 
[WARNING]   - com.google.errorprone.annotations.NoAllocation
[WARNING]   - com.google.errorprone.annotations.Var
[WARNING]   - com.google.errorprone.annotations.IncompatibleModifiers
[WARNING]   - com.google.errorprone.annotations.CompatibleWith
[WARNING]   - com.google.errorprone.annotations.concurrent.LockMethod
[WARNING]   - com.google.errorprone.annotations.FormatString
[WARNING]   - com.google.errorprone.annotations.DoNotCall
[WARNING]   - com.google.errorprone.annotations.Immutable
[WARNING]   - com.google.errorprone.annotations.RestrictedApi
[WARNING]   - com.google.errorprone.annotations.CompileTimeConstant
[WARNING]   - 12 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, jetty-util-9.4.15.v20190215.jar, mango-cli-0.0.3-SNAPSHOT.jar define 285 overlapping classes: 
[WARNING]   - org.eclipse.jetty.util.MemoryUtils$1
[WARNING]   - org.eclipse.jetty.util.resource.URLResource
[WARNING]   - org.eclipse.jetty.util.Scanner$DiscreteListener
[WARNING]   - org.eclipse.jetty.util.MultiReleaseJarFile$VersionedJarEntry
[WARNING]   - org.eclipse.jetty.util.log.StacklessLogging
[WARNING]   - org.eclipse.jetty.util.component.Dumpable
[WARNING]   - org.eclipse.jetty.util.preventers.Java2DLeakPreventer
[WARNING]   - org.eclipse.jetty.util.InetAddressSet$LegacyInetRange
[WARNING]   - org.eclipse.jetty.util.resource.JarFileResource
[WARNING]   - org.eclipse.jetty.util.IncludeExcludeSet$SetContainsPredicate
[WARNING]   - 275 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, avro-ipc-1.7.7.jar, mango-cli-0.0.3-SNAPSHOT.jar define 114 overlapping classes: 
[WARNING]   - org.apache.avro.ipc.HandshakeRequest$1
[WARNING]   - org.apache.avro.ipc.stats.Histogram
[WARNING]   - org.apache.avro.ipc.stats.Histogram$Entry
[WARNING]   - org.apache.avro.ipc.trace.Span$Builder
[WARNING]   - org.apache.avro.ipc.trace.TraceNode
[WARNING]   - org.apache.avro.ipc.specific.SpecificRequestor
[WARNING]   - org.apache.avro.ipc.stats.Histogram$SegmenterException
[WARNING]   - org.apache.avro.ipc.SaslSocketServer$AnonymousServer
[WARNING]   - org.apache.avro.ipc.stats.Histogram$Segmenter
[WARNING]   - org.apache.avro.ipc.SaslSocketServer$2
[WARNING]   - 104 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, netty-3.9.9.Final.jar, mango-cli-0.0.3-SNAPSHOT.jar define 879 overlapping classes: 
[WARNING]   - org.jboss.netty.handler.traffic.TrafficCounter$TrafficMonitoringTask
[WARNING]   - org.jboss.netty.handler.codec.spdy.SpdyGoAwayFrame
[WARNING]   - org.jboss.netty.util.internal.jzlib.Deflate
[WARNING]   - org.jboss.netty.channel.socket.ServerSocketChannelConfig
[WARNING]   - org.jboss.netty.util.internal.ConcurrentHashMap$HashIterator
[WARNING]   - org.jboss.netty.handler.codec.serialization.ObjectDecoder
[WARNING]   - org.jboss.netty.util.internal.jzlib.Tree
[WARNING]   - org.jboss.netty.util.internal.ConcurrentIdentityWeakKeyHashMap$Segment
[WARNING]   - org.jboss.netty.util.internal.ConcurrentIdentityHashMap$ValueIterator
[WARNING]   - org.jboss.netty.handler.codec.http.multipart.HttpPostRequestEncoder
[WARNING]   - 869 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, jersey-server-2.22.2.jar, mango-cli-0.0.3-SNAPSHOT.jar define 665 overlapping classes: 
[WARNING]   - org.glassfish.jersey.server.internal.inject.ParamConverters$TypeFromString
[WARNING]   - org.glassfish.jersey.server.internal.inject.QueryParamValueFactoryProvider
[WARNING]   - org.glassfish.jersey.server.internal.inject.ParamInjectionResolver
[WARNING]   - org.glassfish.jersey.server.internal.InternalServerProperties
[WARNING]   - org.glassfish.jersey.server.internal.inject.ParameterInjectionBinder$5
[WARNING]   - jersey.repackaged.org.objectweb.asm.FieldWriter
[WARNING]   - org.glassfish.jersey.server.internal.RuntimeDelegateImpl
[WARNING]   - org.glassfish.jersey.server.internal.inject.ParamConverterFactory
[WARNING]   - org.glassfish.jersey.server.internal.monitoring.RequestEventImpl$Builder
[WARNING]   - org.glassfish.jersey.server.ContainerRequest
[WARNING]   - 655 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, mango-cli-0.0.3-SNAPSHOT.jar, zstd-jni-1.3.2-2.jar define 8 overlapping classes: 
[WARNING]   - com.github.luben.zstd.ZstdDirectBufferDecompressingStream
[WARNING]   - com.github.luben.zstd.ZstdOutputStream
[WARNING]   - com.github.luben.zstd.ZstdDictCompress
[WARNING]   - com.github.luben.zstd.ZstdDictDecompress
[WARNING]   - com.github.luben.zstd.ZstdInputStream
[WARNING]   - com.github.luben.zstd.Zstd
[WARNING]   - com.github.luben.zstd.util.Native
[WARNING]   - com.github.luben.zstd.ZstdDirectBufferCompressingStream
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, j2objc-annotations-1.1.jar, mango-cli-0.0.3-SNAPSHOT.jar define 12 overlapping classes: 
[WARNING]   - com.google.j2objc.annotations.Property
[WARNING]   - com.google.j2objc.annotations.RetainedWith
[WARNING]   - com.google.j2objc.annotations.RetainedLocalRef
[WARNING]   - com.google.j2objc.annotations.J2ObjCIncompatible
[WARNING]   - com.google.j2objc.annotations.AutoreleasePool
[WARNING]   - com.google.j2objc.annotations.LoopTranslation$LoopStyle
[WARNING]   - com.google.j2objc.annotations.ReflectionSupport$Level
[WARNING]   - com.google.j2objc.annotations.ReflectionSupport
[WARNING]   - com.google.j2objc.annotations.Weak
[WARNING]   - com.google.j2objc.annotations.WeakOuter
[WARNING]   - 2 more...
[WARNING] joda-time-2.9.1.jar, mango-core-0.0.3-SNAPSHOT.jar, mango-cli-0.0.3-SNAPSHOT.jar define 246 overlapping classes: 
[WARNING]   - org.joda.time.field.RemainderDateTimeField
[WARNING]   - org.joda.time.convert.ReadableDurationConverter
[WARNING]   - org.joda.time.convert.ReadableIntervalConverter
[WARNING]   - org.joda.time.field.SkipUndoDateTimeField
[WARNING]   - org.joda.time.format.DateTimeFormatterBuilder$TimeZoneName
[WARNING]   - org.joda.time.tz.DateTimeZoneBuilder$RuleSet
[WARNING]   - org.joda.time.chrono.BasicDayOfMonthDateTimeField
[WARNING]   - org.joda.time.Duration
[WARNING]   - org.joda.time.field.OffsetDateTimeField
[WARNING]   - org.joda.time.format.ISODateTimeFormat
[WARNING]   - 236 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, chill-java-0.8.4.jar, mango-cli-0.0.3-SNAPSHOT.jar define 54 overlapping classes: 
[WARNING]   - com.twitter.chill.java.ClosureSerializer
[WARNING]   - com.twitter.chill.config.JavaMapConfig
[WARNING]   - com.twitter.chill.java.IterableRegistrar
[WARNING]   - com.twitter.chill.java.SqlTimeSerializer
[WARNING]   - com.twitter.chill.KryoInstantiator
[WARNING]   - com.twitter.chill.java.PackageRegistrar
[WARNING]   - com.twitter.chill.config.ConfiguredInstantiator
[WARNING]   - com.twitter.chill.java.SimpleDateFormatSerializer
[WARNING]   - com.twitter.chill.KryoInstantiator$4
[WARNING]   - com.twitter.chill.java.UnmodifiableSetSerializer
[WARNING]   - 44 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, scala-library-2.11.7.jar, mango-cli-0.0.3-SNAPSHOT.jar define 3825 overlapping classes: 
[WARNING]   - scala.collection.mutable.SortedSet$class
[WARNING]   - scala.collection.immutable.IndexedSeq
[WARNING]   - scala.collection.SeqLike$$anonfun$reverseMap$2
[WARNING]   - scala.Function2$mcDID$sp
[WARNING]   - scala.collection.immutable.IntMapValueIterator
[WARNING]   - scala.collection.MapLike$DefaultKeySet
[WARNING]   - scala.collection.parallel.FactoryOps$Otherwise
[WARNING]   - scala.math.Ordering$String$
[WARNING]   - scala.util.Either$
[WARNING]   - scala.collection.mutable.SetProxy
[WARNING]   - 3815 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, gson-2.3.jar, mango-cli-0.0.3-SNAPSHOT.jar define 165 overlapping classes: 
[WARNING]   - com.google.gson.internal.bind.JsonTreeWriter
[WARNING]   - com.google.gson.internal.Excluder
[WARNING]   - com.google.gson.JsonDeserializationContext
[WARNING]   - com.google.gson.FieldNamingPolicy$5
[WARNING]   - com.google.gson.internal.LinkedTreeMap$KeySet
[WARNING]   - com.google.gson.internal.$Gson$Types
[WARNING]   - com.google.gson.internal.UnsafeAllocator$2
[WARNING]   - com.google.gson.internal.bind.SqlDateTypeAdapter$1
[WARNING]   - com.google.gson.FieldAttributes
[WARNING]   - com.google.gson.internal.$Gson$Types$ParameterizedTypeImpl
[WARNING]   - 155 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, mango-cli-0.0.3-SNAPSHOT.jar, hk2-locator-2.4.0-b34.jar define 95 overlapping classes: 
[WARNING]   - org.jvnet.hk2.internal.PerLocatorUtilities$1
[WARNING]   - org.jvnet.hk2.internal.Utilities$4
[WARNING]   - org.jvnet.hk2.internal.ProxyUtilities$2
[WARNING]   - org.jvnet.hk2.internal.ServiceLocatorImpl$12
[WARNING]   - org.jvnet.hk2.internal.MethodInterceptorInvocationHandler
[WARNING]   - org.jvnet.hk2.internal.ClazzCreator
[WARNING]   - org.jvnet.hk2.internal.ValidationInformationImpl
[WARNING]   - org.jvnet.hk2.internal.ServiceLocatorImpl$6
[WARNING]   - org.jvnet.hk2.internal.ConstructorInterceptorHandler$1
[WARNING]   - org.jvnet.hk2.internal.ServiceLocatorImpl$IgdValue
[WARNING]   - 85 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, jsr203hadoop-1.0.3.jar, mango-cli-0.0.3-SNAPSHOT.jar define 27 overlapping classes: 
[WARNING]   - hdfs.jsr203.HadoopDirectoryStream
[WARNING]   - hdfs.jsr203.HadoopPath
[WARNING]   - hdfs.jsr203.HadoopFileSystem$1
[WARNING]   - hdfs.jsr203.HadoopFileOwnerAttributeView
[WARNING]   - hdfs.jsr203.HadoopUserPrincipal
[WARNING]   - hdfs.jsr203.IAttributeReader
[WARNING]   - hdfs.jsr203.HadoopPath$1
[WARNING]   - hdfs.jsr203.HadoopBasicFileAttributes
[WARNING]   - hdfs.jsr203.HadoopDirectoryStream$1
[WARNING]   - hdfs.jsr203.package-info
[WARNING]   - 17 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, spark-network-shuffle_2.11-2.3.3.jar, mango-cli-0.0.3-SNAPSHOT.jar define 41 overlapping classes: 
[WARNING]   - org.apache.spark.network.shuffle.RetryingBlockFetcher$1
[WARNING]   - org.apache.spark.network.shuffle.protocol.BlockTransferMessage$Type
[WARNING]   - org.apache.spark.network.shuffle.ShuffleIndexRecord
[WARNING]   - org.apache.spark.network.sasl.ShuffleSecretManager
[WARNING]   - org.apache.spark.network.shuffle.SimpleDownloadFile
[WARNING]   - org.apache.spark.network.shuffle.OneForOneBlockFetcher
[WARNING]   - org.apache.spark.network.shuffle.ExternalShuffleBlockResolver$2
[WARNING]   - org.apache.spark.network.shuffle.ExternalShuffleBlockHandler$ManagedBufferIterator
[WARNING]   - org.apache.spark.network.shuffle.DownloadFileManager
[WARNING]   - org.apache.spark.network.shuffle.protocol.RegisterExecutor
[WARNING]   - 31 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, RoaringBitmap-0.5.11.jar, mango-cli-0.0.3-SNAPSHOT.jar define 69 overlapping classes: 
[WARNING]   - org.roaringbitmap.ReverseRunContainerShortIterator
[WARNING]   - org.roaringbitmap.ShortIterator
[WARNING]   - org.roaringbitmap.Util
[WARNING]   - org.roaringbitmap.buffer.RawMappeableRunContainerShortIterator
[WARNING]   - org.roaringbitmap.buffer.MappeableBitmapContainer
[WARNING]   - org.roaringbitmap.buffer.BufferFastAggregation$2
[WARNING]   - org.roaringbitmap.buffer.MappeableBitmapContainerShortIterator
[WARNING]   - org.roaringbitmap.RunContainerShortIterator
[WARNING]   - org.roaringbitmap.buffer.ReverseMappeableArrayContainerShortIterator
[WARNING]   - org.roaringbitmap.buffer.MappeableContainerPointer
[WARNING]   - 59 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, commons-lang3-3.5.jar, mango-cli-0.0.3-SNAPSHOT.jar define 260 overlapping classes: 
[WARNING]   - org.apache.commons.lang3.time.StopWatch$State$1
[WARNING]   - org.apache.commons.lang3.ThreadUtils$1
[WARNING]   - org.apache.commons.lang3.ThreadUtils$ThreadGroupPredicate
[WARNING]   - org.apache.commons.lang3.builder.MultilineRecursiveToStringStyle
[WARNING]   - org.apache.commons.lang3.concurrent.AbstractCircuitBreaker
[WARNING]   - org.apache.commons.lang3.SerializationUtils
[WARNING]   - org.apache.commons.lang3.time.FastDatePrinter$TwentyFourHourField
[WARNING]   - org.apache.commons.lang3.LocaleUtils
[WARNING]   - org.apache.commons.lang3.concurrent.ConcurrentException
[WARNING]   - org.apache.commons.lang3.CharRange
[WARNING]   - 250 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, base64-2.3.8.jar, mango-cli-0.0.3-SNAPSHOT.jar define 4 overlapping classes: 
[WARNING]   - net.iharder.Base64$InputStream
[WARNING]   - net.iharder.Base64$OutputStream
[WARNING]   - net.iharder.Base64$1
[WARNING]   - net.iharder.Base64
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, httpclient-4.5.2.jar, mango-cli-0.0.3-SNAPSHOT.jar define 463 overlapping classes: 
[WARNING]   - org.apache.http.impl.cookie.RFC2109Spec
[WARNING]   - org.apache.http.impl.execchain.MainClientExec
[WARNING]   - org.apache.http.conn.routing.RouteInfo$TunnelType
[WARNING]   - org.apache.http.client.methods.HttpGet
[WARNING]   - org.apache.http.impl.cookie.BrowserCompatSpecFactory
[WARNING]   - org.apache.http.impl.client.HttpAuthenticator
[WARNING]   - org.apache.http.conn.ManagedClientConnection
[WARNING]   - org.apache.http.client.protocol.RequestAuthCache
[WARNING]   - org.apache.http.conn.params.ConnConnectionParamBean
[WARNING]   - org.apache.http.impl.client.IdleConnectionEvictor
[WARNING]   - 453 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, commons-codec-1.12.jar, mango-cli-0.0.3-SNAPSHOT.jar define 92 overlapping classes: 
[WARNING]   - org.apache.commons.codec.language.Nysiis
[WARNING]   - org.apache.commons.codec.language.bm.Rule$1
[WARNING]   - org.apache.commons.codec.language.bm.Rule$RPattern
[WARNING]   - org.apache.commons.codec.language.ColognePhonetic$CologneInputBuffer
[WARNING]   - org.apache.commons.codec.digest.HmacUtils
[WARNING]   - org.apache.commons.codec.language.bm.BeiderMorseEncoder
[WARNING]   - org.apache.commons.codec.digest.UnixCrypt
[WARNING]   - org.apache.commons.codec.language.Soundex
[WARNING]   - org.apache.commons.codec.binary.BinaryCodec
[WARNING]   - org.apache.commons.codec.language.bm.Languages$1
[WARNING]   - 82 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, java-xmlbuilder-1.1.jar, mango-cli-0.0.3-SNAPSHOT.jar define 5 overlapping classes: 
[WARNING]   - com.jamesmurty.utils.NamespaceContextImpl
[WARNING]   - com.jamesmurty.utils.BaseXMLBuilder
[WARNING]   - com.jamesmurty.utils.XMLBuilder
[WARNING]   - com.jamesmurty.utils.XMLBuilder2
[WARNING]   - com.jamesmurty.utils.XMLBuilderRuntimeException
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, utils-intervalrdd-spark2_2.11-0.2.13.jar, mango-cli-0.0.3-SNAPSHOT.jar define 51 overlapping classes: 
[WARNING]   - org.bdgenomics.utils.interval.array.IntervalArray$
[WARNING]   - org.bdgenomics.utils.interval.rdd.IntervalRDD$$anonfun$collect$2
[WARNING]   - org.bdgenomics.utils.interval.array.IntervalArray$$anonfun$4
[WARNING]   - org.bdgenomics.utils.interval.array.Interval$class
[WARNING]   - org.bdgenomics.utils.interval.array.IntervalArray$$anonfun$get$1
[WARNING]   - org.bdgenomics.utils.interval.rdd.IntervalRDD$$anonfun$4
[WARNING]   - org.bdgenomics.utils.interval.array.IntervalArray$$anonfun$1
[WARNING]   - org.bdgenomics.utils.interval.rdd.IntervalRDD$
[WARNING]   - org.bdgenomics.utils.interval.rdd.IntervalRDD$$anonfun$filter$1
[WARNING]   - org.bdgenomics.utils.interval.array.IntervalArray$$anonfun$mapValues$1
[WARNING]   - 41 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, mango-cli-0.0.3-SNAPSHOT.jar, joda-convert-1.8.1.jar define 94 overlapping classes: 
[WARNING]   - org.joda.convert.JDKStringConverter$18
[WARNING]   - org.joda.convert.JDKStringConverter$28
[WARNING]   - org.joda.convert.factory.NumericArrayStringConverterFactory$FloatArrayStringConverter
[WARNING]   - org.joda.convert.JDKStringConverter$1
[WARNING]   - org.joda.convert.factory.BooleanArrayStringConverterFactory
[WARNING]   - org.joda.convert.factory.NumericObjectArrayStringConverterFactory
[WARNING]   - org.joda.convert.FromString
[WARNING]   - org.joda.convert.StringConverter
[WARNING]   - org.joda.convert.StringConvert$1
[WARNING]   - org.joda.convert.factory.CharObjectArrayStringConverterFactory$CharecterArrayStringConverter
[WARNING]   - 84 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, ngs-java-2.9.0.jar, mango-cli-0.0.3-SNAPSHOT.jar define 73 overlapping classes: 
[WARNING]   - ngs.itf.ReadItf
[WARNING]   - gov.nih.nlm.ncbi.ngs.error.cause.JvmErrorCause
[WARNING]   - ngs.ReferenceIterator
[WARNING]   - gov.nih.nlm.ncbi.ngs.Manager$1
[WARNING]   - gov.nih.nlm.ncbi.ngs.LMProperties
[WARNING]   - gov.nih.nlm.ncbi.ngs.error.LibraryLoadError
[WARNING]   - gov.nih.nlm.ncbi.ngs.LibDependencies
[WARNING]   - gov.nih.nlm.ncbi.ngs.error.cause.ConnectionProblemCause
[WARNING]   - ngs.itf.PileupEventItf
[WARNING]   - gov.nih.nlm.ncbi.ngs.LibManager$Location
[WARNING]   - 63 more...
[WARNING] javax.inject-2.4.0-b34.jar, mango-core-0.0.3-SNAPSHOT.jar, javax.inject-1.jar, mango-cli-0.0.3-SNAPSHOT.jar define 6 overlapping classes: 
[WARNING]   - javax.inject.Inject
[WARNING]   - javax.inject.Singleton
[WARNING]   - javax.inject.Named
[WARNING]   - javax.inject.Scope
[WARNING]   - javax.inject.Provider
[WARNING]   - javax.inject.Qualifier
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, mango-cli-0.0.3-SNAPSHOT.jar, jackson-databind-2.6.7.1.jar define 563 overlapping classes: 
[WARNING]   - com.fasterxml.jackson.databind.BeanDescription
[WARNING]   - com.fasterxml.jackson.databind.deser.impl.BeanAsArrayBuilderDeserializer
[WARNING]   - com.fasterxml.jackson.databind.SerializerProvider
[WARNING]   - com.fasterxml.jackson.databind.introspect.AnnotatedMethodMap
[WARNING]   - com.fasterxml.jackson.databind.ser.std.StaticListSerializerBase
[WARNING]   - com.fasterxml.jackson.databind.ser.std.NumberSerializers$ShortSerializer
[WARNING]   - com.fasterxml.jackson.databind.ser.BeanSerializerFactory
[WARNING]   - com.fasterxml.jackson.databind.jsonFormatVisitors.JsonMapFormatVisitor
[WARNING]   - com.fasterxml.jackson.databind.jsonFormatVisitors.JsonFormatTypes
[WARNING]   - com.fasterxml.jackson.databind.deser.impl.MethodProperty
[WARNING]   - 553 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, mango-cli-0.0.3-SNAPSHOT.jar, jackson-annotations-2.6.7.jar define 58 overlapping classes: 
[WARNING]   - com.fasterxml.jackson.annotation.JsonAutoDetect
[WARNING]   - com.fasterxml.jackson.annotation.JsonInclude
[WARNING]   - com.fasterxml.jackson.annotation.ObjectIdGenerators
[WARNING]   - com.fasterxml.jackson.annotation.JsonFormat$Features
[WARNING]   - com.fasterxml.jackson.annotation.JsonFormat$Feature
[WARNING]   - com.fasterxml.jackson.annotation.JsonIgnore
[WARNING]   - com.fasterxml.jackson.annotation.JsonSetter
[WARNING]   - com.fasterxml.jackson.annotation.JsonTypeInfo$None
[WARNING]   - com.fasterxml.jackson.annotation.JsonSubTypes
[WARNING]   - com.fasterxml.jackson.annotation.JsonFormat$Shape
[WARNING]   - 48 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, avro-1.8.2.jar, mango-cli-0.0.3-SNAPSHOT.jar define 1172 overlapping classes: 
[WARNING]   - org.apache.avro.message.SchemaStore
[WARNING]   - avro.shaded.com.google.common.collect.SingletonImmutableList
[WARNING]   - org.apache.avro.io.EncoderFactory$DefaultEncoderFactory
[WARNING]   - avro.shaded.com.google.common.collect.Iterables$15
[WARNING]   - org.apache.avro.GuavaClasses
[WARNING]   - avro.shaded.com.google.common.collect.Sets$PowerSet$1$1
[WARNING]   - avro.shaded.com.google.common.collect.RegularImmutableMap
[WARNING]   - org.apache.avro.generic.GenericDatumReader$2
[WARNING]   - avro.shaded.com.google.common.collect.Synchronized$SynchronizedSortedSet
[WARNING]   - org.apache.avro.file.BZip2Codec
[WARNING]   - 1162 more...
[WARNING] juniversalchardet-1.0.3.jar, mango-core-0.0.3-SNAPSHOT.jar, mango-cli-0.0.3-SNAPSHOT.jar define 62 overlapping classes: 
[WARNING]   - org.mozilla.universalchardet.prober.distributionanalysis.EUCJPDistributionAnalysis
[WARNING]   - org.mozilla.universalchardet.prober.SJISProber
[WARNING]   - org.mozilla.universalchardet.prober.statemachine.ISO2022KRSMModel
[WARNING]   - org.mozilla.universalchardet.prober.sequence.Latin7Model
[WARNING]   - org.mozilla.universalchardet.prober.CharsetProber$ProbingState
[WARNING]   - org.mozilla.universalchardet.prober.distributionanalysis.JISDistributionAnalysis
[WARNING]   - org.mozilla.universalchardet.prober.UTF8Prober
[WARNING]   - org.mozilla.universalchardet.prober.sequence.Koi8rModel
[WARNING]   - org.mozilla.universalchardet.prober.contextanalysis.JapaneseContextAnalysis
[WARNING]   - org.mozilla.universalchardet.prober.sequence.MacCyrillicModel
[WARNING]   - 52 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, mango-cli-0.0.3-SNAPSHOT.jar, hadoop-bam-7.9.2.jar define 115 overlapping classes: 
[WARNING]   - org.seqdoop.hadoop_bam.BAMSplitGuesser
[WARNING]   - org.seqdoop.hadoop_bam.util.SAMHeaderReader
[WARNING]   - org.seqdoop.hadoop_bam.QseqInputFormat
[WARNING]   - org.seqdoop.hadoop_bam.KeyIgnoringBCFRecordWriter
[WARNING]   - org.seqdoop.hadoop_bam.FastaInputFormat$1
[WARNING]   - org.seqdoop.hadoop_bam.util.SAMOutputPreparer$1
[WARNING]   - org.seqdoop.hadoop_bam.QseqOutputFormat$QseqRecordWriter
[WARNING]   - org.seqdoop.hadoop_bam.FastaInputFormat
[WARNING]   - org.seqdoop.hadoop_bam.LineReader
[WARNING]   - org.seqdoop.hadoop_bam.util.BGZFCodec
[WARNING]   - 105 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, mango-cli-0.0.3-SNAPSHOT.jar, args4j-2.0.31.jar define 71 overlapping classes: 
[WARNING]   - org.kohsuke.args4j.spi.DoubleOptionHandler
[WARNING]   - org.kohsuke.args4j.spi.MethodSetter
[WARNING]   - org.kohsuke.args4j.spi.StringArrayOptionHandler
[WARNING]   - org.kohsuke.args4j.spi.MacAddressOptionHandler
[WARNING]   - org.kohsuke.args4j.spi.SubCommand
[WARNING]   - org.kohsuke.args4j.spi.PatternOptionHandler
[WARNING]   - org.kohsuke.args4j.ParserProperties$1
[WARNING]   - org.kohsuke.args4j.OptionHandlerFilter$2
[WARNING]   - org.kohsuke.args4j.spi.MultiFileOptionHandler
[WARNING]   - org.kohsuke.args4j.Localizable
[WARNING]   - 61 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, slf4j-log4j12-1.7.16.jar, mango-cli-0.0.3-SNAPSHOT.jar define 6 overlapping classes: 
[WARNING]   - org.slf4j.impl.Log4jLoggerAdapter
[WARNING]   - org.slf4j.impl.Log4jMDCAdapter
[WARNING]   - org.slf4j.impl.StaticMarkerBinder
[WARNING]   - org.slf4j.impl.Log4jLoggerFactory
[WARNING]   - org.slf4j.impl.StaticLoggerBinder
[WARNING]   - org.slf4j.impl.StaticMDCBinder
[WARNING] scalap-2.11.7.jar, mango-core-0.0.3-SNAPSHOT.jar, mango-cli-0.0.3-SNAPSHOT.jar define 567 overlapping classes: 
[WARNING]   - scala.tools.scalap.scalax.rules.scalasig.ScalaSigEntryParsers$$anonfun$25$$anonfun$apply$13
[WARNING]   - scala.tools.scalap.scalax.rules.scalasig.ScalaSigPrinter$$anonfun$_pmt$1$1
[WARNING]   - scala.tools.scalap.scalax.rules.scalasig.ScalaSigParser$$anonfun$scalaSigFromAnnotation$2
[WARNING]   - scala.tools.scalap.scalax.rules.StateRules$$anonfun$anyOf$2
[WARNING]   - scala.tools.scalap.scalax.rules.scalasig.ConstantType$
[WARNING]   - scala.tools.scalap.scalax.rules.scalasig.Symbol$class
[WARNING]   - scala.tools.scalap.scalax.rules.Rule$$anonfun$flatMap$1
[WARNING]   - scala.tools.scalap.scalax.rules.scalasig.ScalaSigPrinter$$anonfun$printSymbolAttributes$1
[WARNING]   - scala.tools.scalap.scalax.rules.InRule$$anonfun$unary_$bang$1$$anonfun$apply$1
[WARNING]   - scala.tools.scalap.scalax.rules.scalasig.NoType$
[WARNING]   - 557 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, mango-cli-0.0.3-SNAPSHOT.jar, spark-tags_2.11-2.3.3.jar define 11 overlapping classes: 
[WARNING]   - org.apache.spark.annotation.Since
[WARNING]   - org.apache.spark.annotation.InterfaceStability$Stable
[WARNING]   - org.apache.spark.annotation.package
[WARNING]   - org.apache.spark.annotation.DeveloperApi
[WARNING]   - org.apache.spark.annotation.InterfaceStability$Evolving
[WARNING]   - org.apache.spark.annotation.package$
[WARNING]   - org.apache.spark.annotation.Experimental
[WARNING]   - org.apache.spark.annotation.AlphaComponent
[WARNING]   - org.apache.spark.annotation.Private
[WARNING]   - org.apache.spark.annotation.InterfaceStability
[WARNING]   - 1 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, mango-cli-0.0.3-SNAPSHOT.jar, javax.ws.rs-api-2.0.1.jar define 125 overlapping classes: 
[WARNING]   - javax.ws.rs.ext.RuntimeDelegate$HeaderDelegate
[WARNING]   - javax.ws.rs.DefaultValue
[WARNING]   - javax.ws.rs.core.StreamingOutput
[WARNING]   - javax.ws.rs.HEAD
[WARNING]   - javax.ws.rs.ext.WriterInterceptor
[WARNING]   - javax.ws.rs.core.Request
[WARNING]   - javax.ws.rs.ext.Providers
[WARNING]   - javax.ws.rs.container.Suspended
[WARNING]   - javax.ws.rs.container.ConnectionCallback
[WARNING]   - javax.ws.rs.client.FactoryFinder
[WARNING]   - 115 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, commons-logging-1.1.1.jar, mango-cli-0.0.3-SNAPSHOT.jar define 22 overlapping classes: 
[WARNING]   - org.apache.commons.logging.LogSource
[WARNING]   - org.apache.commons.logging.impl.ServletContextCleaner
[WARNING]   - org.apache.commons.logging.LogFactory$4
[WARNING]   - org.apache.commons.logging.impl.WeakHashtable$1
[WARNING]   - org.apache.commons.logging.LogFactory$3
[WARNING]   - org.apache.commons.logging.LogFactory$2
[WARNING]   - org.apache.commons.logging.impl.LogFactoryImpl$2
[WARNING]   - org.apache.commons.logging.impl.LogKitLogger
[WARNING]   - org.apache.commons.logging.impl.LogFactoryImpl$3
[WARNING]   - org.apache.commons.logging.impl.WeakHashtable$Entry
[WARNING]   - 12 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, jersey-common-2.22.2.jar, mango-cli-0.0.3-SNAPSHOT.jar define 474 overlapping classes: 
[WARNING]   - org.glassfish.jersey.internal.inject.ContextInjectionResolver$Binder
[WARNING]   - org.glassfish.jersey.internal.ServiceFinder$ServiceIteratorProvider
[WARNING]   - org.glassfish.jersey.message.internal.HttpHeaderReader$1
[WARNING]   - org.glassfish.jersey.internal.util.collection.KeyComparatorHashMap$1
[WARNING]   - org.glassfish.jersey.uri.UriTemplate$1ValuesFromArrayStrategy
[WARNING]   - org.glassfish.jersey.message.internal.TracingLogger$Level
[WARNING]   - org.glassfish.jersey.internal.util.PropertyAlias
[WARNING]   - org.glassfish.jersey.uri.UriTemplate$3
[WARNING]   - org.glassfish.jersey.model.internal.ComponentBag$7
[WARNING]   - org.glassfish.jersey.spi.AbstractThreadPoolProvider
[WARNING]   - 464 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, mango-cli-0.0.3-SNAPSHOT.jar, metrics-json-3.1.5.jar define 11 overlapping classes: 
[WARNING]   - com.codahale.metrics.json.MetricsModule$MetricRegistrySerializer
[WARNING]   - com.codahale.metrics.json.HealthCheckModule$HealthCheckResultSerializer
[WARNING]   - com.codahale.metrics.json.HealthCheckModule
[WARNING]   - com.codahale.metrics.json.MetricsModule$TimerSerializer
[WARNING]   - com.codahale.metrics.json.MetricsModule$GaugeSerializer
[WARNING]   - com.codahale.metrics.json.MetricsModule$1
[WARNING]   - com.codahale.metrics.json.MetricsModule$MeterSerializer
[WARNING]   - com.codahale.metrics.json.MetricsModule
[WARNING]   - com.codahale.metrics.json.MetricsModule$HistogramSerializer
[WARNING]   - com.codahale.metrics.json.MetricsModule$CounterSerializer
[WARNING]   - 1 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, mango-cli-0.0.3-SNAPSHOT.jar, adam-apis-spark2_2.11-0.26.0.jar define 133 overlapping classes: 
[WARNING]   - org.bdgenomics.adam.api.java.FeaturesToFragmentsConverter
[WARNING]   - org.bdgenomics.adam.api.java.GenotypesToCoverageConverter
[WARNING]   - org.bdgenomics.adam.api.java.GenotypesToFragmentsConverter
[WARNING]   - org.bdgenomics.adam.api.java.ToVariantDatasetConversion$class
[WARNING]   - org.bdgenomics.adam.api.java.ToCoverageDatasetConversion$class
[WARNING]   - org.bdgenomics.adam.api.java.FeaturesToVariantsDatasetConverter
[WARNING]   - org.bdgenomics.adam.api.java.ToVariantDatasetConversion$$typecreator7$1
[WARNING]   - org.bdgenomics.adam.api.java.VariantContextsToContigsConverter
[WARNING]   - org.bdgenomics.adam.api.java.VariantsToContigsDatasetConverter
[WARNING]   - org.bdgenomics.adam.api.java.VariantsToVariantsConverter
[WARNING]   - 123 more...
[WARNING] httpcore-4.4.4.jar, mango-core-0.0.3-SNAPSHOT.jar, mango-cli-0.0.3-SNAPSHOT.jar define 254 overlapping classes: 
[WARNING]   - org.apache.http.protocol.HttpRequestHandler
[WARNING]   - org.apache.http.impl.io.ChunkedOutputStream
[WARNING]   - org.apache.http.protocol.ChainBuilder
[WARNING]   - org.apache.http.impl.entity.DisallowIdentityContentLengthStrategy
[WARNING]   - org.apache.http.impl.ConnSupport
[WARNING]   - org.apache.http.impl.io.DefaultHttpResponseParserFactory
[WARNING]   - org.apache.http.HttpClientConnection
[WARNING]   - org.apache.http.NameValuePair
[WARNING]   - org.apache.http.protocol.HttpExpectationVerifier
[WARNING]   - org.apache.http.protocol.UriPatternMatcher
[WARNING]   - 244 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, scalatra_2.11-2.4.1.jar, mango-cli-0.0.3-SNAPSHOT.jar define 936 overlapping classes: 
[WARNING]   - org.scalatra.util.FileCharset$
[WARNING]   - org.scalatra.ApiFormats$$anonfun$requestFormat$1
[WARNING]   - org.scalatra.ScalatraBase$$anonfun$11
[WARNING]   - org.scalatra.SinatraRouteMatcher$BuilderGeneratorParser$$anonfun$org$scalatra$SinatraRouteMatcher$BuilderGeneratorParser$$prefixedOptional$5
[WARNING]   - org.scalatra.util.conversion.Conversions$SeqConversion
[WARNING]   - org.scalatra.Route$$anonfun$appendMatcher$1
[WARNING]   - org.scalatra.Route
[WARNING]   - org.scalatra.FutureSupport$$anonfun$renderFutureResult$1$1$$anonfun$apply$2
[WARNING]   - org.scalatra.PreconditionFailed$
[WARNING]   - org.scalatra.util.conversion.DefaultImplicitConversions$$anonfun$17
[WARNING]   - 926 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, jackson-mapper-asl-1.9.13.jar, mango-cli-0.0.3-SNAPSHOT.jar define 502 overlapping classes: 
[WARNING]   - org.codehaus.jackson.map.ext.DOMSerializer
[WARNING]   - org.codehaus.jackson.node.POJONode
[WARNING]   - org.codehaus.jackson.map.ext.JodaDeserializers$LocalDateDeserializer
[WARNING]   - org.codehaus.jackson.map.ser.StdSerializers$UtilDateSerializer
[WARNING]   - org.codehaus.jackson.map.deser.std.JsonNodeDeserializer$ArrayDeserializer
[WARNING]   - org.codehaus.jackson.map.deser.std.PrimitiveArrayDeserializers$StringDeser
[WARNING]   - org.codehaus.jackson.map.util.Comparators$1
[WARNING]   - org.codehaus.jackson.map.util.StdDateFormat
[WARNING]   - org.codehaus.jackson.map.KeyDeserializer
[WARNING]   - org.codehaus.jackson.map.MapperConfig$Impl
[WARNING]   - 492 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, jackson-core-2.6.7.jar, mango-cli-0.0.3-SNAPSHOT.jar define 93 overlapping classes: 
[WARNING]   - com.fasterxml.jackson.core.sym.BytesToNameCanonicalizer$Bucket
[WARNING]   - com.fasterxml.jackson.core.FormatSchema
[WARNING]   - com.fasterxml.jackson.core.io.InputDecorator
[WARNING]   - com.fasterxml.jackson.core.JsonGenerator$Feature
[WARNING]   - com.fasterxml.jackson.core.sym.BytesToNameCanonicalizer
[WARNING]   - com.fasterxml.jackson.core.type.ResolvedType
[WARNING]   - com.fasterxml.jackson.core.io.SegmentedStringWriter
[WARNING]   - com.fasterxml.jackson.core.TreeNode
[WARNING]   - com.fasterxml.jackson.core.sym.Name
[WARNING]   - com.fasterxml.jackson.core.util.JsonGeneratorDelegate
[WARNING]   - 83 more...
[WARNING] json4s-jackson_2.11-3.2.11.jar, mango-core-0.0.3-SNAPSHOT.jar, mango-cli-0.0.3-SNAPSHOT.jar define 27 overlapping classes: 
[WARNING]   - org.json4s.jackson.JsonMethods$class
[WARNING]   - org.json4s.jackson.Json
[WARNING]   - org.json4s.jackson.Json$
[WARNING]   - org.json4s.jackson.JValueSerializerResolver$
[WARNING]   - org.json4s.jackson.Json4sModule$
[WARNING]   - org.json4s.jackson.JsonMethods$$anonfun$parseOpt$1
[WARNING]   - org.json4s.jackson.JValueDeserializerResolver$
[WARNING]   - org.json4s.jackson.package
[WARNING]   - org.json4s.jackson.package$
[WARNING]   - org.json4s.jackson.Json4sScalaModule$
[WARNING]   - 17 more...
[WARNING] parquet-common-1.8.3.jar, mango-core-0.0.3-SNAPSHOT.jar, mango-cli-0.0.3-SNAPSHOT.jar define 32 overlapping classes: 
[WARNING]   - org.apache.parquet.SemanticVersion$SemanticVersionParseException
[WARNING]   - org.apache.parquet.glob.GlobNode$GlobNodeSequence
[WARNING]   - org.apache.parquet.Ints
[WARNING]   - org.apache.parquet.Version
[WARNING]   - org.apache.parquet.glob.GlobNode$Atom
[WARNING]   - org.apache.parquet.SemanticVersion$NumberOrString
[WARNING]   - org.apache.parquet.Files
[WARNING]   - org.apache.parquet.ParquetRuntimeException
[WARNING]   - org.apache.parquet.glob.GlobNode
[WARNING]   - org.apache.parquet.io.InputFile
[WARNING]   - 22 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, scala-xml_2.11-1.0.5.jar, mango-cli-0.0.3-SNAPSHOT.jar define 421 overlapping classes: 
[WARNING]   - scala.xml.PrettyPrinter$Para
[WARNING]   - scala.xml.Group$
[WARNING]   - scala.xml.PrettyPrinter$$anonfun$traverse$1
[WARNING]   - scala.xml.MetaData
[WARNING]   - scala.xml.MalformedAttributeException
[WARNING]   - scala.xml.pull.EvComment
[WARNING]   - scala.xml.parsing.TokenTests$$anonfun$isSpace$1
[WARNING]   - scala.xml.Properties
[WARNING]   - scala.xml.parsing.MarkupParser$$anonfun$1
[WARNING]   - scala.xml.pull.EvEntityRef$
[WARNING]   - 411 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, lz4-java-1.4.0.jar, mango-cli-0.0.3-SNAPSHOT.jar define 77 overlapping classes: 
[WARNING]   - net.jpountz.xxhash.AbstractStreamingXXHash32Java
[WARNING]   - net.jpountz.lz4.LZ4BlockInputStream
[WARNING]   - net.jpountz.lz4.LZ4FrameOutputStream
[WARNING]   - net.jpountz.xxhash.XXHash32JNI
[WARNING]   - net.jpountz.lz4.LZ4BlockOutputStream
[WARNING]   - net.jpountz.lz4.LZ4JNI
[WARNING]   - net.jpountz.lz4.LZ4JavaUnsafeFastDecompressor
[WARNING]   - net.jpountz.lz4.LZ4SafeUtils
[WARNING]   - net.jpountz.xxhash.StreamingXXHash32JNI$Factory
[WARNING]   - net.jpountz.util.UnsafeUtils
[WARNING]   - 67 more...
[WARNING] jersey-media-jaxb-2.22.2.jar, mango-core-0.0.3-SNAPSHOT.jar, mango-cli-0.0.3-SNAPSHOT.jar define 47 overlapping classes: 
[WARNING]   - org.glassfish.jersey.jaxb.internal.XmlRootElementJaxbProvider$App
[WARNING]   - org.glassfish.jersey.jaxb.internal.XmlJaxbElementProvider$General
[WARNING]   - org.glassfish.jersey.jaxb.internal.XmlRootObjectJaxbProvider$General
[WARNING]   - org.glassfish.jersey.jaxb.internal.JaxbStringReaderProvider$1
[WARNING]   - org.glassfish.jersey.jaxb.internal.XmlRootObjectJaxbProvider
[WARNING]   - org.glassfish.jersey.jaxb.internal.AbstractJaxbProvider$4
[WARNING]   - org.glassfish.jersey.jaxb.internal.XmlCollectionJaxbProvider$General
[WARNING]   - org.glassfish.jersey.jaxb.internal.JaxbMessagingBinder
[WARNING]   - org.glassfish.jersey.jaxb.internal.AbstractJaxbProvider$2
[WARNING]   - org.glassfish.jersey.jaxb.internal.XmlCollectionJaxbProvider$Text
[WARNING]   - 37 more...
[WARNING] chill_2.11-0.8.4.jar, mango-core-0.0.3-SNAPSHOT.jar, mango-cli-0.0.3-SNAPSHOT.jar define 150 overlapping classes: 
[WARNING]   - com.twitter.chill.Tuple11Serializer
[WARNING]   - com.twitter.chill.InnerClosureFinder
[WARNING]   - com.twitter.chill.Instantiators$$anonfun$reflectAsm$1
[WARNING]   - com.twitter.chill.RichKryo$$anonfun$fromInputStream$1
[WARNING]   - com.twitter.chill.package$$anon$3
[WARNING]   - com.twitter.chill.JavaIterableWrapperSerializer
[WARNING]   - com.twitter.chill.Instantiators$$anonfun$newOrElse$1
[WARNING]   - com.twitter.chill.SortedMapSerializer$$anonfun$write$1
[WARNING]   - com.twitter.chill.package$$anon$5$$anonfun$apply$2
[WARNING]   - com.twitter.chill.Tuple8Serializer
[WARNING]   - 140 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, convert-ga4gh-0.6.0.jar, mango-cli-0.0.3-SNAPSHOT.jar define 20 overlapping classes: 
[WARNING]   - org.bdgenomics.convert.ga4gh.CigarOperatorToOperation$1
[WARNING]   - org.bdgenomics.convert.ga4gh.BdgenomicsVariantToGa4ghVariant
[WARNING]   - org.bdgenomics.convert.ga4gh.CigarToCigarUnits
[WARNING]   - org.bdgenomics.convert.ga4gh.BdgenomicsFeatureToGa4ghFeature
[WARNING]   - org.bdgenomics.convert.ga4gh.StringToOntologyTerm
[WARNING]   - org.bdgenomics.convert.ga4gh.ProgramToProcessingStep
[WARNING]   - org.bdgenomics.convert.ga4gh.Ga4ghReadGroupToBdgenomicsReadGroup
[WARNING]   - org.bdgenomics.convert.ga4gh.Ga4ghOntologyTermToBdgenomicsOntologyTerm
[WARNING]   - org.bdgenomics.convert.ga4gh.ProcessingStepToProgram
[WARNING]   - org.bdgenomics.convert.ga4gh.BdgenomicsStrandToGa4ghStrand
[WARNING]   - 10 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, xz-1.5.jar, mango-cli-0.0.3-SNAPSHOT.jar define 105 overlapping classes: 
[WARNING]   - org.tukaani.xz.lzma.LZMADecoder$LengthDecoder
[WARNING]   - org.tukaani.xz.index.IndexDecoder
[WARNING]   - org.tukaani.xz.lzma.LZMADecoder
[WARNING]   - org.tukaani.xz.lzma.LZMAEncoderFast
[WARNING]   - org.tukaani.xz.lzma.LZMAEncoder$LengthEncoder
[WARNING]   - org.tukaani.xz.BlockOutputStream
[WARNING]   - org.tukaani.xz.simple.SimpleFilter
[WARNING]   - org.tukaani.xz.rangecoder.RangeCoder
[WARNING]   - org.tukaani.xz.XZOutputStream
[WARNING]   - org.tukaani.xz.UncompressedLZMA2OutputStream
[WARNING]   - 95 more...
[WARNING] stream-2.7.0.jar, mango-core-0.0.3-SNAPSHOT.jar, mango-cli-0.0.3-SNAPSHOT.jar define 78 overlapping classes: 
[WARNING]   - com.clearspring.analytics.stream.cardinality.HyperLogLog
[WARNING]   - com.clearspring.analytics.stream.membership.DataOutputBuffer
[WARNING]   - com.clearspring.analytics.stream.quantile.TDigest
[WARNING]   - com.clearspring.analytics.stream.cardinality.HyperLogLog$SerializationHolder
[WARNING]   - com.clearspring.analytics.util.ListNode2
[WARNING]   - com.clearspring.analytics.stream.frequency.CountMinSketch
[WARNING]   - com.clearspring.analytics.util.DoublyLinkedList
[WARNING]   - com.clearspring.analytics.stream.cardinality.CountThenEstimate$CountThenEstimateMergeException
[WARNING]   - com.clearspring.analytics.stream.quantile.QDigest$1
[WARNING]   - com.clearspring.analytics.stream.cardinality.HyperLogLog$HyperLogLogMergeException
[WARNING]   - 68 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, mango-cli-0.0.3-SNAPSHOT.jar, scalatra-common_2.11-2.4.1.jar define 21 overlapping classes: 
[WARNING]   - org.scalatra.servlet.HasMultipartConfig$$anonfun$org$scalatra$servlet$HasMultipartConfig$$multipartConfigFromContext$1$$anonfun$apply$3
[WARNING]   - org.scalatra.servlet.HasMultipartConfig$$anonfun$org$scalatra$servlet$HasMultipartConfig$$multipartConfigFromContext$1$$anonfun$apply$2
[WARNING]   - org.scalatra.servlet.ScalatraAsyncSupport
[WARNING]   - org.scalatra.servlet.HasMultipartConfig
[WARNING]   - org.scalatra.servlet.MountConfig
[WARNING]   - org.scalatra.servlet.HasMultipartConfig$
[WARNING]   - org.scalatra.servlet.MultipartConfig$
[WARNING]   - org.scalatra.servlet.HasMultipartConfig$$anonfun$org$scalatra$servlet$HasMultipartConfig$$multipartConfigFromContext$1$$anonfun$apply$1
[WARNING]   - org.scalatra.servlet.MultipartConfig$$anonfun$toMultipartConfigElement$2
[WARNING]   - org.scalatra.servlet.HasMultipartConfig$$anonfun$initialize$1
[WARNING]   - 11 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, mango-cli-0.0.3-SNAPSHOT.jar, leveldbjni-all-1.8.jar define 75 overlapping classes: 
[WARNING]   - org.fusesource.leveldbjni.internal.NativeObject
[WARNING]   - org.fusesource.leveldbjni.internal.NativeDB$DBJNI
[WARNING]   - org.fusesource.leveldbjni.internal.NativeCache
[WARNING]   - org.fusesource.leveldbjni.internal.NativeComparator$ComparatorJNI
[WARNING]   - org.fusesource.leveldbjni.internal.NativeIterator
[WARNING]   - org.iq80.leveldb.WriteBatch
[WARNING]   - org.fusesource.hawtjni.runtime.ClassFlag
[WARNING]   - org.fusesource.leveldbjni.internal.NativeBuffer$1
[WARNING]   - org.iq80.leveldb.DBComparator
[WARNING]   - org.fusesource.leveldbjni.internal.NativeBuffer$Pool
[WARNING]   - 65 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, avro-mapred-1.7.7-hadoop2.jar, mango-cli-0.0.3-SNAPSHOT.jar define 126 overlapping classes: 
[WARNING]   - org.apache.avro.mapreduce.AvroMultipleOutputs
[WARNING]   - org.apache.avro.mapreduce.AvroKeyValueOutputFormat
[WARNING]   - org.apache.avro.mapred.SequenceFileReader$8
[WARNING]   - org.apache.avro.hadoop.file.HadoopCodecFactory
[WARNING]   - org.apache.avro.mapred.Pair
[WARNING]   - org.apache.avro.mapred.AvroMultipleOutputs
[WARNING]   - org.apache.avro.mapred.FsInput
[WARNING]   - org.apache.avro.mapred.tether.InputProtocol$Callback
[WARNING]   - org.apache.avro.mapred.AvroOutputFormat$1
[WARNING]   - org.apache.avro.hadoop.file.SortedKeyValueFile$Reader$Options
[WARNING]   - 116 more...
[WARNING] javax.annotation-api-1.2.jar, mango-core-0.0.3-SNAPSHOT.jar, mango-cli-0.0.3-SNAPSHOT.jar define 15 overlapping classes: 
[WARNING]   - javax.annotation.ManagedBean
[WARNING]   - javax.annotation.PreDestroy
[WARNING]   - javax.annotation.Generated
[WARNING]   - javax.annotation.Resource$AuthenticationType
[WARNING]   - javax.annotation.security.DeclareRoles
[WARNING]   - javax.annotation.Priority
[WARNING]   - javax.annotation.Resource
[WARNING]   - javax.annotation.security.DenyAll
[WARNING]   - javax.annotation.security.RunAs
[WARNING]   - javax.annotation.sql.DataSourceDefinitions
[WARNING]   - 5 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, mime-util-2.1.3.jar, mango-cli-0.0.3-SNAPSHOT.jar define 26 overlapping classes: 
[WARNING]   - eu.medsea.mimeutil.detector.MagicMimeMimeDetector
[WARNING]   - eu.medsea.mimeutil.detector.OpendesktopMimeDetector$1
[WARNING]   - eu.medsea.mimeutil.MimeDetectorRegistry
[WARNING]   - eu.medsea.mimeutil.detector.OpendesktopMimeDetector
[WARNING]   - eu.medsea.mimeutil.detector.InvalidMagicMimeEntryException
[WARNING]   - eu.medsea.mimeutil.TextMimeDetector
[WARNING]   - eu.medsea.util.ZipJarUtil
[WARNING]   - eu.medsea.mimeutil.detector.MagicMimeEntry
[WARNING]   - eu.medsea.mimeutil.detector.FileWatcher
[WARNING]   - eu.medsea.mimeutil.detector.WindowsRegistryMimeDetector$StreamReader
[WARNING]   - 16 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, mango-cli-0.0.3-SNAPSHOT.jar, jcl-over-slf4j-1.7.16.jar define 3 overlapping classes: 
[WARNING]   - org.apache.commons.logging.impl.SLF4JLogFactory
[WARNING]   - org.apache.commons.logging.impl.SLF4JLocationAwareLog
[WARNING]   - org.apache.commons.logging.impl.SLF4JLog
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, utils-misc-spark2_2.11-0.2.13.jar, mango-cli-0.0.3-SNAPSHOT.jar define 11 overlapping classes: 
[WARNING]   - org.bdgenomics.utils.misc.MathUtils
[WARNING]   - org.bdgenomics.utils.misc.Logging$
[WARNING]   - org.bdgenomics.utils.misc.MathUtils$$anonfun$scalarArrayMultiply$1
[WARNING]   - org.bdgenomics.utils.misc.Logging$class
[WARNING]   - org.bdgenomics.utils.misc.Logging$$anonfun$getContextOrClassLoader$1
[WARNING]   - org.bdgenomics.utils.misc.MathUtils$$anonfun$aggregateArray$1
[WARNING]   - org.bdgenomics.utils.misc.Logging
[WARNING]   - org.bdgenomics.utils.misc.HadoopUtil$
[WARNING]   - org.bdgenomics.utils.misc.MathUtils$$anonfun$softmax$1
[WARNING]   - org.bdgenomics.utils.misc.MathUtils$
[WARNING]   - 1 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, mango-cli-0.0.3-SNAPSHOT.jar, javassist-3.18.1-GA.jar define 390 overlapping classes: 
[WARNING]   - javassist.util.proxy.ProxyFactory$3
[WARNING]   - javassist.bytecode.FieldInfo
[WARNING]   - javassist.DirClassPath
[WARNING]   - javassist.ClassPool$1
[WARNING]   - javassist.expr.Cast$ProceedForCast
[WARNING]   - javassist.URLClassPath
[WARNING]   - javassist.CtMethod$LongConstParameter
[WARNING]   - javassist.compiler.Javac$2
[WARNING]   - javassist.bytecode.annotation.ClassMemberValue
[WARNING]   - javassist.bytecode.stackmap.TypeData$ClassName
[WARNING]   - 380 more...
[WARNING] jetty-security-9.4.15.v20190215.jar, mango-core-0.0.3-SNAPSHOT.jar, mango-cli-0.0.3-SNAPSHOT.jar define 61 overlapping classes: 
[WARNING]   - org.eclipse.jetty.security.SpnegoUserPrincipal
[WARNING]   - org.eclipse.jetty.security.authentication.DigestAuthenticator
[WARNING]   - org.eclipse.jetty.security.UserDataConstraint
[WARNING]   - org.eclipse.jetty.security.PropertyUserStore$UserListener
[WARNING]   - org.eclipse.jetty.security.authentication.FormAuthenticator
[WARNING]   - org.eclipse.jetty.security.UserAuthentication
[WARNING]   - org.eclipse.jetty.security.DefaultAuthenticatorFactory
[WARNING]   - org.eclipse.jetty.security.SecurityHandler
[WARNING]   - org.eclipse.jetty.security.IdentityService
[WARNING]   - org.eclipse.jetty.security.authentication.ConfigurableSpnegoAuthenticator$UserIdentityHolder
[WARNING]   - 51 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, spark-kvstore_2.11-2.3.3.jar, mango-cli-0.0.3-SNAPSHOT.jar define 28 overlapping classes: 
[WARNING]   - org.apache.spark.util.kvstore.LevelDB$TypeAliases
[WARNING]   - org.apache.spark.util.kvstore.LevelDB$1
[WARNING]   - org.apache.spark.util.kvstore.LevelDB$PrefixCache
[WARNING]   - org.apache.spark.util.kvstore.LevelDBTypeInfo$Index
[WARNING]   - org.apache.spark.util.kvstore.KVStore
[WARNING]   - org.apache.spark.util.kvstore.KVTypeInfo
[WARNING]   - org.apache.spark.util.kvstore.KVIndex
[WARNING]   - org.apache.spark.util.kvstore.KVStoreIterator
[WARNING]   - org.apache.spark.util.kvstore.InMemoryStore$InMemoryView
[WARNING]   - org.apache.spark.util.kvstore.InMemoryStore$1
[WARNING]   - 18 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, mango-cli-0.0.3-SNAPSHOT.jar, py4j-0.10.7.jar define 67 overlapping classes: 
[WARNING]   - py4j.reflection.TypeConverter
[WARNING]   - py4j.Py4JJavaServer
[WARNING]   - py4j.Py4JNetworkException
[WARNING]   - py4j.reflection.PythonProxyHandler
[WARNING]   - py4j.reflection.MethodInvoker$1
[WARNING]   - py4j.commands.JVMViewCommand
[WARNING]   - py4j.Py4JClientConnection
[WARNING]   - py4j.model.Py4JClass
[WARNING]   - py4j.commands.ReflectionCommand
[WARNING]   - py4j.commands.MemoryCommand
[WARNING]   - 57 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, oro-2.0.8.jar, mango-cli-0.0.3-SNAPSHOT.jar define 62 overlapping classes: 
[WARNING]   - org.apache.oro.text.perl.MalformedPerl5PatternException
[WARNING]   - org.apache.oro.text.regex.Perl5Pattern
[WARNING]   - org.apache.oro.io.RegexFilenameFilter
[WARNING]   - org.apache.oro.util.Cache
[WARNING]   - org.apache.oro.text.GenericPatternCache
[WARNING]   - org.apache.oro.text.awk.DFAState
[WARNING]   - org.apache.oro.text.regex.StringSubstitution
[WARNING]   - org.apache.oro.text.awk.AwkCompiler
[WARNING]   - org.apache.oro.text.PatternCacheLRU
[WARNING]   - org.apache.oro.text.regex.Substitution
[WARNING]   - 52 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, osgi-resource-locator-1.0.1.jar, mango-cli-0.0.3-SNAPSHOT.jar define 12 overlapping classes: 
[WARNING]   - org.glassfish.hk2.osgiresourcelocator.ServiceLoaderImpl$1
[WARNING]   - org.glassfish.hk2.osgiresourcelocator.ServiceLoader$ProviderFactory
[WARNING]   - org.glassfish.hk2.osgiresourcelocator.ServiceLoader
[WARNING]   - org.glassfish.hk2.osgiresourcelocator.ServiceLoaderImpl$ProvidersPerBundle
[WARNING]   - org.glassfish.hk2.osgiresourcelocator.ResourceFinderImpl
[WARNING]   - org.glassfish.hk2.osgiresourcelocator.ResourceFinder
[WARNING]   - org.glassfish.hk2.osgiresourcelocator.Activator
[WARNING]   - org.glassfish.hk2.osgiresourcelocator.ServiceLoaderImpl$DefaultFactory
[WARNING]   - org.glassfish.hk2.osgiresourcelocator.ServiceLoaderImpl
[WARNING]   - org.glassfish.hk2.osgiresourcelocator.ServiceLoaderImpl$BundleTracker
[WARNING]   - 2 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, mango-cli-0.0.3-SNAPSHOT.jar, ga4gh-schemas-0.6.0a10.jar define 541 overlapping classes: 
[WARNING]   - ga4gh.AlleleAnnotations$TranscriptEffectOrBuilder
[WARNING]   - ga4gh.PeerServiceOuterClass$GetInfoResponse$1
[WARNING]   - ga4gh.MetadataServiceOuterClass$GetDatasetRequestOrBuilder
[WARNING]   - ga4gh.BioMetadataServiceOuterClass$SearchBiosamplesRequest
[WARNING]   - ga4gh.RnaQuantificationServiceOuterClass$SearchExpressionLevelsRequest$Builder
[WARNING]   - ga4gh.GenotypePhenotypeServiceOuterClass$EvidenceQuery$1
[WARNING]   - ga4gh.BioMetadataServiceOuterClass$SearchBiosamplesRequest$1
[WARNING]   - ga4gh.ReferenceServiceOuterClass$ListReferenceBasesResponseOrBuilder
[WARNING]   - ga4gh.VariantServiceOuterClass$SearchCallSetsRequest
[WARNING]   - ga4gh.RnaQuantificationServiceOuterClass$GetExpressionLevelRequest
[WARNING]   - 531 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, avro-ipc-1.7.7-tests.jar, mango-cli-0.0.3-SNAPSHOT.jar define 248 overlapping classes: 
[WARNING]   - test.StringablesRecord$Builder
[WARNING]   - org.apache.avro.specific.TestSpecificRecordBuilder
[WARNING]   - org.apache.avro.test.TestRecordWithUnion$Builder
[WARNING]   - org.apache.avro.test.TestError
[WARNING]   - org.apache.avro.test.Kind
[WARNING]   - org.apache.avro.io.Perf$IntTest
[WARNING]   - org.apache.avro.Interop$1
[WARNING]   - org.apache.avro.test.TestError$Builder
[WARNING]   - org.apache.avro.TestProtocolReflect$1
[WARNING]   - org.apache.avro.ipc.trace.TestFileSpanStorage
[WARNING]   - 238 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, mango-cli-0.0.3-SNAPSHOT.jar, htsjdk-2.16.1.jar define 983 overlapping classes: 
[WARNING]   - htsjdk.samtools.cram.ref.ReferenceSource
[WARNING]   - htsjdk.samtools.HighAccuracyDownsamplingIterator
[WARNING]   - htsjdk.samtools.util.zip.DeflaterFactory
[WARNING]   - htsjdk.samtools.filter.DuplicateReadFilter
[WARNING]   - htsjdk.variant.vcf.VCFEncoder
[WARNING]   - htsjdk.samtools.util.CloserUtil
[WARNING]   - htsjdk.tribble.TribbleException$FeatureFileDoesntExist
[WARNING]   - htsjdk.tribble.index.tabix.TabixIndex
[WARNING]   - htsjdk.samtools.AbstractBAMFileIndex
[WARNING]   - htsjdk.variant.variantcontext.writer.VariantContextWriterBuilder$1
[WARNING]   - 973 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, utils-cli-spark2_2.11-0.2.13.jar, mango-cli-0.0.3-SNAPSHOT.jar define 23 overlapping classes: 
[WARNING]   - org.bdgenomics.utils.cli.Args4j
[WARNING]   - org.bdgenomics.utils.cli.BDGSparkCommand$$anonfun$printMetrics$4
[WARNING]   - org.bdgenomics.utils.cli.ParquetArgs
[WARNING]   - org.bdgenomics.utils.cli.BDGSparkCommand$$anonfun$printMetrics$3
[WARNING]   - org.bdgenomics.utils.cli.BDGSparkCommand$class
[WARNING]   - org.bdgenomics.utils.cli.BDGSparkCommand$$anonfun$printMetrics$2
[WARNING]   - org.bdgenomics.utils.cli.BDGSparkCommand$$anonfun$run$1
[WARNING]   - org.bdgenomics.utils.cli.ParquetArgs$class
[WARNING]   - org.bdgenomics.utils.cli.BDGSparkCommand$$anonfun$printMetrics$1
[WARNING]   - org.bdgenomics.utils.cli.SaveArgs
[WARNING]   - 13 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, utils-io-spark2_2.11-0.2.13.jar, mango-cli-0.0.3-SNAPSHOT.jar define 23 overlapping classes: 
[WARNING]   - org.bdgenomics.utils.io.HTTPRangedByteAccess$$anonfun$3
[WARNING]   - org.bdgenomics.utils.io.FileLocator
[WARNING]   - org.bdgenomics.utils.io.ByteAccess
[WARNING]   - org.bdgenomics.utils.io.HTTPRangedByteAccess
[WARNING]   - org.bdgenomics.utils.io.HTTPRangedByteAccess$$anonfun$readByteStream$1
[WARNING]   - org.bdgenomics.utils.io.HTTPRangedByteAccess$$anonfun$1
[WARNING]   - org.bdgenomics.utils.io.ByteAccess$$anonfun$readFully$2
[WARNING]   - org.bdgenomics.utils.io.LocalFileByteAccess
[WARNING]   - org.bdgenomics.utils.io.HTTPRangedByteAccess$$anonfun$2
[WARNING]   - org.bdgenomics.utils.io.HTTPFileLocator$
[WARNING]   - 13 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, aopalliance-1.0.jar, mango-cli-0.0.3-SNAPSHOT.jar, aopalliance-repackaged-2.4.0-b34.jar define 9 overlapping classes: 
[WARNING]   - org.aopalliance.intercept.ConstructorInterceptor
[WARNING]   - org.aopalliance.intercept.MethodInvocation
[WARNING]   - org.aopalliance.intercept.MethodInterceptor
[WARNING]   - org.aopalliance.intercept.Invocation
[WARNING]   - org.aopalliance.aop.AspectException
[WARNING]   - org.aopalliance.intercept.Interceptor
[WARNING]   - org.aopalliance.intercept.Joinpoint
[WARNING]   - org.aopalliance.aop.Advice
[WARNING]   - org.aopalliance.intercept.ConstructorInvocation
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, log4j-1.2.17.jar, mango-cli-0.0.3-SNAPSHOT.jar define 314 overlapping classes: 
[WARNING]   - org.apache.log4j.or.sax.AttributesRenderer
[WARNING]   - org.apache.log4j.pattern.MessagePatternConverter
[WARNING]   - org.apache.log4j.chainsaw.ControlPanel$3
[WARNING]   - org.apache.log4j.pattern.NameAbbreviator$DropElementAbbreviator
[WARNING]   - org.apache.log4j.jmx.MethodUnion
[WARNING]   - org.apache.log4j.lf5.viewer.LogTable
[WARNING]   - org.apache.log4j.BasicConfigurator
[WARNING]   - org.apache.log4j.rewrite.RewriteAppender
[WARNING]   - org.apache.log4j.lf5.viewer.LogBrokerMonitor$22
[WARNING]   - org.apache.log4j.pattern.LoggingEventPatternConverter
[WARNING]   - 304 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, mango-cli-0.0.3-SNAPSHOT.jar, metrics-jvm-3.1.5.jar define 38 overlapping classes: 
[WARNING]   - com.codahale.metrics.jvm.MemoryUsageGaugeSet$15
[WARNING]   - com.codahale.metrics.jvm.MemoryUsageGaugeSet$3
[WARNING]   - com.codahale.metrics.jvm.CachedThreadStatesGaugeSet
[WARNING]   - com.codahale.metrics.jvm.MemoryUsageGaugeSet
[WARNING]   - com.codahale.metrics.jvm.MemoryUsageGaugeSet$8
[WARNING]   - com.codahale.metrics.jvm.ClassLoadingGaugeSet$1
[WARNING]   - com.codahale.metrics.jvm.MemoryUsageGaugeSet$5
[WARNING]   - com.codahale.metrics.jvm.BufferPoolMetricSet
[WARNING]   - com.codahale.metrics.jvm.ThreadStatesGaugeSet
[WARNING]   - com.codahale.metrics.jvm.MemoryUsageGaugeSet$10
[WARNING]   - 28 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, validation-api-1.1.0.Final.jar, mango-cli-0.0.3-SNAPSHOT.jar define 106 overlapping classes: 
[WARNING]   - javax.validation.ConstraintDeclarationException
[WARNING]   - javax.validation.GroupDefinitionException
[WARNING]   - javax.validation.ConstraintValidatorContext$ConstraintViolationBuilder$LeafNodeBuilderDefinedContext
[WARNING]   - javax.validation.metadata.ParameterDescriptor
[WARNING]   - javax.validation.Validator
[WARNING]   - javax.validation.ConstraintValidatorContext$ConstraintViolationBuilder
[WARNING]   - javax.validation.constraints.AssertTrue$List
[WARNING]   - javax.validation.constraints.Past
[WARNING]   - javax.validation.metadata.GroupConversionDescriptor
[WARNING]   - javax.validation.constraints.Max
[WARNING]   - 96 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, mango-cli-0.0.3-SNAPSHOT.jar, spark-launcher_2.11-2.3.3.jar define 34 overlapping classes: 
[WARNING]   - org.apache.spark.launcher.AbstractAppHandle
[WARNING]   - org.apache.spark.launcher.SparkAppHandle$State
[WARNING]   - org.apache.spark.launcher.SparkAppHandle$Listener
[WARNING]   - org.apache.spark.launcher.ChildProcAppHandle
[WARNING]   - org.apache.spark.launcher.LauncherProtocol
[WARNING]   - org.apache.spark.launcher.LauncherProtocol$Stop
[WARNING]   - org.apache.spark.launcher.SparkSubmitOptionParser
[WARNING]   - org.apache.spark.launcher.LauncherProtocol$Message
[WARNING]   - org.apache.spark.launcher.CommandBuilderUtils
[WARNING]   - org.apache.spark.launcher.SparkSubmitCommandBuilder$OptionParser
[WARNING]   - 24 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, parquet-column-1.8.3.jar, mango-cli-0.0.3-SNAPSHOT.jar define 731 overlapping classes: 
[WARNING]   - org.apache.parquet.it.unimi.dsi.fastutil.longs.LongComparator
[WARNING]   - org.apache.parquet.filter2.recordlevel.IncrementallyUpdatedFilterPredicateBuilder$25
[WARNING]   - org.apache.parquet.column.values.dictionary.DictionaryValuesWriter$PlainIntegerDictionaryValuesWriter
[WARNING]   - org.apache.parquet.it.unimi.dsi.fastutil.ints.Int2IntLinkedOpenHashMap$MapEntry
[WARNING]   - org.apache.parquet.io.PrimitiveColumnIO
[WARNING]   - org.apache.parquet.io.api.Binary$ByteBufferBackedBinary
[WARNING]   - org.apache.parquet.column.statistics.BooleanStatistics
[WARNING]   - org.apache.parquet.column.values.boundedint.BoundedIntValuesReader
[WARNING]   - org.apache.parquet.schema.PrimitiveType$PrimitiveTypeName$3
[WARNING]   - org.apache.parquet.it.unimi.dsi.fastutil.doubles.DoubleSortedSet
[WARNING]   - 721 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, jetty-servlet-9.4.15.v20190215.jar, mango-cli-0.0.3-SNAPSHOT.jar define 48 overlapping classes: 
[WARNING]   - org.eclipse.jetty.servlet.ServletHandler$Default404Servlet
[WARNING]   - org.eclipse.jetty.servlet.FilterMapping
[WARNING]   - org.eclipse.jetty.servlet.ErrorPageErrorHandler$PageLookupTechnique
[WARNING]   - org.eclipse.jetty.servlet.ServletContextHandler
[WARNING]   - org.eclipse.jetty.servlet.Holder$1
[WARNING]   - org.eclipse.jetty.servlet.FilterMapping$1
[WARNING]   - org.eclipse.jetty.servlet.ServletContextHandler$ServletContainerInitializerCaller
[WARNING]   - org.eclipse.jetty.servlet.FilterHolder
[WARNING]   - org.eclipse.jetty.servlet.Invoker
[WARNING]   - org.eclipse.jetty.servlet.Holder
[WARNING]   - 38 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, convert-htsjdk-0.6.0.jar, mango-cli-0.0.3-SNAPSHOT.jar define 3 overlapping classes: 
[WARNING]   - org.bdgenomics.convert.htsjdk.HtsjdkModule
[WARNING]   - org.bdgenomics.convert.htsjdk.ConversionStringencyToValidationStringency
[WARNING]   - org.bdgenomics.convert.htsjdk.ValidationStringencyToConversionStringency
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, mango-cli-0.0.3-SNAPSHOT.jar define 720 overlapping classes: 
[WARNING]   - shaded.com.google.protobuf.FieldMaskProto
[WARNING]   - org.bdgenomics.mango.filters.Discovery$$anonfun$4
[WARNING]   - shaded.com.google.protobuf.DescriptorProtos$EnumValueDescriptorProto
[WARNING]   - shaded.com.google.protobuf.NioByteString$1
[WARNING]   - org.bdgenomics.mango.models.LazyMaterialization$$anonfun$2
[WARNING]   - shaded.com.google.protobuf.GeneratedMessage$BuilderParent
[WARNING]   - shaded.com.google.protobuf.GeneratedMessage$4
[WARNING]   - shaded.com.google.protobuf.TextFormat$UnknownFieldParseException
[WARNING]   - shaded.com.google.protobuf.DescriptorProtos$DescriptorProto$ExtensionRange$Builder
[WARNING]   - org.bdgenomics.mango.converters.SearchFeaturesRequestGA4GH
[WARNING]   - 710 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, mango-cli-0.0.3-SNAPSHOT.jar, objenesis-2.1.jar define 37 overlapping classes: 
[WARNING]   - org.objenesis.ObjenesisBase
[WARNING]   - org.objenesis.instantiator.gcj.GCJInstantiator
[WARNING]   - org.objenesis.strategy.SingleInstantiatorStrategy
[WARNING]   - org.objenesis.instantiator.sun.SunReflectionFactoryHelper
[WARNING]   - org.objenesis.ObjenesisHelper
[WARNING]   - org.objenesis.instantiator.jrockit.JRockitLegacyInstantiator
[WARNING]   - org.objenesis.instantiator.sun.SunReflectionFactoryInstantiator
[WARNING]   - org.objenesis.instantiator.basic.NullInstantiator
[WARNING]   - org.objenesis.instantiator.android.Android17Instantiator
[WARNING]   - org.objenesis.instantiator.ObjectInstantiator
[WARNING]   - 27 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, commons-jexl-2.1.1.jar, mango-cli-0.0.3-SNAPSHOT.jar define 178 overlapping classes: 
[WARNING]   - org.apache.commons.jexl2.internal.AbstractExecutor$Get
[WARNING]   - org.apache.commons.jexl2.introspection.JexlPropertyGet
[WARNING]   - org.apache.commons.jexl2.parser.StringParser
[WARNING]   - org.apache.commons.jexl2.parser.ASTBitwiseOrNode
[WARNING]   - org.apache.commons.jexl2.internal.introspection.MethodKey$1
[WARNING]   - org.apache.commons.jexl2.Main
[WARNING]   - org.apache.commons.jexl2.parser.ASTForeachStatement
[WARNING]   - org.apache.commons.jexl2.introspection.Sandbox
[WARNING]   - org.apache.commons.jexl2.internal.introspection.ClassMap
[WARNING]   - org.apache.commons.jexl2.parser.ASTFunctionNode
[WARNING]   - 168 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, mango-cli-0.0.3-SNAPSHOT.jar, animal-sniffer-annotations-1.17.jar define 1 overlapping classes: 
[WARNING]   - org.codehaus.mojo.animal_sniffer.IgnoreJRERequirement
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, jersey-client-2.22.2.jar, mango-cli-0.0.3-SNAPSHOT.jar define 111 overlapping classes: 
[WARNING]   - org.glassfish.jersey.client.ChunkParser
[WARNING]   - org.glassfish.jersey.client.HttpUrlConnectorProvider
[WARNING]   - org.glassfish.jersey.client.JerseyInvocation$EntityPresence
[WARNING]   - org.glassfish.jersey.client.ResponseCallback
[WARNING]   - org.glassfish.jersey.client.authentication.RequestAuthenticationException
[WARNING]   - org.glassfish.jersey.client.JerseyInvocation$5
[WARNING]   - org.glassfish.jersey.client.ClientConfig$State$4
[WARNING]   - org.glassfish.jersey.client.ClientResponse$1
[WARNING]   - org.glassfish.jersey.client.InboundJaxrsResponse$2
[WARNING]   - org.glassfish.jersey.client.internal.HttpUrlConnector$5
[WARNING]   - 101 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, jetty-io-9.4.15.v20190215.jar, mango-cli-0.0.3-SNAPSHOT.jar define 96 overlapping classes: 
[WARNING]   - org.eclipse.jetty.io.ssl.ALPNProcessor
[WARNING]   - org.eclipse.jetty.io.CyclicTimeout$Wakeup
[WARNING]   - org.eclipse.jetty.io.AbstractEndPoint$2
[WARNING]   - org.eclipse.jetty.io.CyclicTimeout$Timeout
[WARNING]   - org.eclipse.jetty.io.ChannelEndPoint$1
[WARNING]   - org.eclipse.jetty.io.WriteFlusher$FailedState
[WARNING]   - org.eclipse.jetty.io.CyclicTimeout$1
[WARNING]   - org.eclipse.jetty.io.ManagedSelector$Acceptor
[WARNING]   - org.eclipse.jetty.io.ssl.SslClientConnectionFactory$1
[WARNING]   - org.eclipse.jetty.io.ByteBufferPool$Lease
[WARNING]   - 86 more...
[WARNING] jetty-http-9.4.15.v20190215.jar, mango-core-0.0.3-SNAPSHOT.jar, mango-cli-0.0.3-SNAPSHOT.jar define 93 overlapping classes: 
[WARNING]   - org.eclipse.jetty.http.pathmap.PathSpec
[WARNING]   - org.eclipse.jetty.http.MultiPartFormInputStream
[WARNING]   - org.eclipse.jetty.http.HttpParser$HttpHandler
[WARNING]   - org.eclipse.jetty.http.MultiPartFormInputStream$MultiPart
[WARNING]   - org.eclipse.jetty.http.BadMessageException
[WARNING]   - org.eclipse.jetty.http.HttpGenerator$PreparedResponse
[WARNING]   - org.eclipse.jetty.http.HttpComplianceSection
[WARNING]   - org.eclipse.jetty.http.HttpParser$IllegalCharacterException
[WARNING]   - org.eclipse.jetty.http.HttpParser$1
[WARNING]   - org.eclipse.jetty.http.PathMap$PathSet
[WARNING]   - 83 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, compress-lzf-1.0.3.jar, mango-cli-0.0.3-SNAPSHOT.jar define 42 overlapping classes: 
[WARNING]   - com.ning.compress.lzf.LZFUncompressor
[WARNING]   - com.ning.compress.BufferRecycler
[WARNING]   - com.ning.compress.lzf.LZFEncoder
[WARNING]   - com.ning.compress.lzf.impl.UnsafeChunkEncoderBE
[WARNING]   - com.ning.compress.lzf.impl.UnsafeChunkEncoderLE
[WARNING]   - com.ning.compress.gzip.OptimizedGZIPInputStream
[WARNING]   - com.ning.compress.lzf.util.LZFFileOutputStream$Wrapper
[WARNING]   - com.ning.compress.lzf.util.LZFFileInputStream$1
[WARNING]   - com.ning.compress.lzf.ChunkEncoder
[WARNING]   - com.ning.compress.lzf.impl.UnsafeChunkDecoder
[WARNING]   - 32 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, mango-cli-0.0.3-SNAPSHOT.jar, netty-all-4.1.17.Final.jar define 2501 overlapping classes: 
[WARNING]   - io.netty.handler.codec.http.multipart.InterfaceHttpData$HttpDataType
[WARNING]   - io.netty.resolver.dns.InflightNameResolver$1
[WARNING]   - io.netty.channel.AbstractChannel$AbstractUnsafe$8
[WARNING]   - io.netty.handler.codec.smtp.DefaultSmtpRequest
[WARNING]   - io.netty.handler.codec.redis.RedisMessage
[WARNING]   - io.netty.handler.codec.memcache.binary.BinaryMemcacheResponse
[WARNING]   - io.netty.handler.timeout.IdleStateHandler
[WARNING]   - io.netty.buffer.FixedCompositeByteBuf$Component
[WARNING]   - io.netty.handler.codec.http.HttpHeaders
[WARNING]   - io.netty.handler.codec.http2.Http2ClientUpgradeCodec
[WARNING]   - 2491 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, utils-metrics-spark2_2.11-0.2.13.jar, mango-cli-0.0.3-SNAPSHOT.jar define 407 overlapping classes: 
[WARNING]   - org.apache.spark.rdd.InstrumentedPairRDDFunctions$$anonfun$reduceByKey$2$$anonfun$apply$33
[WARNING]   - org.bdgenomics.utils.instrumentation.SimpleMonitorValueExtractor
[WARNING]   - org.apache.spark.rdd.InstrumentedPairRDDFunctions$$anonfun$fullOuterJoin$2
[WARNING]   - org.bdgenomics.utils.instrumentation.MetricsListener$$anonfun$onTaskEnd$2
[WARNING]   - org.bdgenomics.utils.metrics.Histogram$$anonfun$countSubset$1
[WARNING]   - org.bdgenomics.utils.instrumentation.Alignment$
[WARNING]   - org.apache.spark.rdd.InstrumentedPairRDDFunctions$$anonfun$saveAsHadoopFile$3
[WARNING]   - org.bdgenomics.utils.instrumentation.Metrics$TreeNode$$anonfun$6
[WARNING]   - org.apache.spark.rdd.InstrumentedRDD$$anonfun$reduce$1$$anonfun$apply$35
[WARNING]   - org.apache.spark.rdd.InstrumentedRDD$$anonfun$aggregate$1$$anonfun$apply$39$$anonfun$apply$40
[WARNING]   - 397 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, mango-cli-0.0.3-SNAPSHOT.jar, pyrolite-4.13.jar define 54 overlapping classes: 
[WARNING]   - net.razorvine.pickle.objects.ByteArrayConstructor
[WARNING]   - net.razorvine.pyro.NameServerProxy
[WARNING]   - net.razorvine.pyro.serializer.PyroSerializer
[WARNING]   - net.razorvine.pickle.objects.DateTimeConstructor
[WARNING]   - net.razorvine.pickle.IObjectConstructor
[WARNING]   - net.razorvine.pickle.objects.ClassDictConstructor
[WARNING]   - net.razorvine.pyro.serializer.PyroUriSerpent
[WARNING]   - net.razorvine.pickle.objects.OperatorAttrGetterForCalendarTz$CalendarLocalizer
[WARNING]   - net.razorvine.pickle.objects.TimeZoneConstructor
[WARNING]   - net.razorvine.pyro.Config
[WARNING]   - 44 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, mango-cli-0.0.3-SNAPSHOT.jar, slf4j-api-1.7.7.jar define 24 overlapping classes: 
[WARNING]   - org.slf4j.helpers.SubstituteLogger
[WARNING]   - org.slf4j.ILoggerFactory
[WARNING]   - org.slf4j.MDC
[WARNING]   - org.slf4j.helpers.BasicMDCAdapter
[WARNING]   - org.slf4j.spi.MDCAdapter
[WARNING]   - org.slf4j.LoggerFactory
[WARNING]   - org.slf4j.helpers.Util
[WARNING]   - org.slf4j.helpers.NOPLogger
[WARNING]   - org.slf4j.helpers.NOPLoggerFactory
[WARNING]   - org.slf4j.helpers.SubstituteLoggerFactory
[WARNING]   - 14 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, mango-cli-0.0.3-SNAPSHOT.jar, spark-core_2.11-2.3.3.jar define 8350 overlapping classes: 
[WARNING]   - org.apache.spark.shuffle.BaseShuffleHandle
[WARNING]   - org.apache.spark.SparkContext$$anonfun$11
[WARNING]   - org.spark_project.jetty.client.util.MultiPartContentProvider$1
[WARNING]   - org.apache.spark.TaskContextImpl$$anonfun$markTaskFailed$1
[WARNING]   - org.apache.spark.util.collection.PrimitiveVector$mcI$sp
[WARNING]   - org.spark_project.jetty.servlets.PushCacheFilter
[WARNING]   - org.apache.spark.util.Utils$$anonfun$downloadFile$1
[WARNING]   - org.apache.spark.util.JsonProtocol$$anonfun$52
[WARNING]   - org.apache.spark.ExecutorAllocationManager$$anonfun$org$apache$spark$ExecutorAllocationManager$$onExecutorAdded$2
[WARNING]   - org.apache.spark.rdd.util.PeriodicRDDCheckpointer
[WARNING]   - 8340 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, metrics-graphite-3.1.5.jar, mango-cli-0.0.3-SNAPSHOT.jar define 10 overlapping classes: 
[WARNING]   - com.codahale.metrics.graphite.PickledGraphite$MetricTuple
[WARNING]   - com.codahale.metrics.graphite.GraphiteReporter$Builder
[WARNING]   - com.codahale.metrics.graphite.Graphite
[WARNING]   - com.codahale.metrics.graphite.GraphiteRabbitMQ$1
[WARNING]   - com.codahale.metrics.graphite.GraphiteSender
[WARNING]   - com.codahale.metrics.graphite.PickledGraphite
[WARNING]   - com.codahale.metrics.graphite.GraphiteUDP
[WARNING]   - com.codahale.metrics.graphite.GraphiteReporter
[WARNING]   - com.codahale.metrics.graphite.GraphiteReporter$1
[WARNING]   - com.codahale.metrics.graphite.GraphiteRabbitMQ
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, ivy-2.4.0.jar, mango-cli-0.0.3-SNAPSHOT.jar define 744 overlapping classes: 
[WARNING]   - org.apache.ivy.ant.IvyDeliver
[WARNING]   - org.apache.ivy.plugins.resolver.util.ApacheHttpURLLister
[WARNING]   - org.apache.ivy.ant.BuildOBRTask
[WARNING]   - org.apache.ivy.osgi.p2.P2MetadataParser$UnitsHandler$1
[WARNING]   - org.apache.ivy.core.cache.ResolutionCacheManager
[WARNING]   - org.apache.ivy.osgi.repo.EditableRepoDescriptor
[WARNING]   - org.apache.ivy.plugins.parser.AbstractModuleDescriptorParser$AbstractParser
[WARNING]   - org.apache.ivy.plugins.latest.LatestLexicographicStrategy$1
[WARNING]   - org.apache.ivy.osgi.repo.FSManifestIterable$3
[WARNING]   - org.apache.ivy.util.url.HttpClientHandler
[WARNING]   - 734 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, mango-cli-0.0.3-SNAPSHOT.jar, metrics-core-3.1.5.jar define 115 overlapping classes: 
[WARNING]   - com.codahale.metrics.JmxReporter$JmxGaugeMBean
[WARNING]   - com.codahale.metrics.ThreadLocalRandomProxy$InternalProvider
[WARNING]   - com.codahale.metrics.JmxReporter
[WARNING]   - com.codahale.metrics.EWMA
[WARNING]   - com.codahale.metrics.Gauge
[WARNING]   - com.codahale.metrics.MetricRegistry$MetricBuilder$1
[WARNING]   - com.codahale.metrics.MetricFilter$1
[WARNING]   - com.codahale.metrics.JmxReporter$JmxCounterMBean
[WARNING]   - com.codahale.metrics.InstrumentedExecutorService$InstrumentedRunnable
[WARNING]   - com.codahale.metrics.RatioGauge$Ratio
[WARNING]   - 105 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, activation-1.1.1.jar, mango-cli-0.0.3-SNAPSHOT.jar define 38 overlapping classes: 
[WARNING]   - javax.activation.DataContentHandlerFactory
[WARNING]   - javax.activation.ObjectDataContentHandler
[WARNING]   - javax.activation.DataContentHandler
[WARNING]   - com.sun.activation.registries.MimeTypeEntry
[WARNING]   - com.sun.activation.viewers.TextViewer
[WARNING]   - com.sun.activation.registries.LogSupport
[WARNING]   - javax.activation.CommandObject
[WARNING]   - javax.activation.SecuritySupport$2
[WARNING]   - com.sun.activation.viewers.TextEditor
[WARNING]   - com.sun.activation.viewers.ImageViewerCanvas
[WARNING]   - 28 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, mango-cli-0.0.3-SNAPSHOT.jar, guice-4.2.0.jar define 573 overlapping classes: 
[WARNING]   - com.google.inject.Scope
[WARNING]   - com.google.inject.Binding
[WARNING]   - com.google.inject.internal.cglib.core.$EmitUtils$3
[WARNING]   - com.google.inject.spi.TypeConverter
[WARNING]   - com.google.inject.internal.ConstructionProxy
[WARNING]   - com.google.inject.spi.InjectionPoint
[WARNING]   - com.google.inject.spi.StaticInjectionRequest
[WARNING]   - com.google.inject.internal.cglib.proxy.$FixedValueGenerator
[WARNING]   - com.google.inject.internal.cglib.proxy.$DispatcherGenerator
[WARNING]   - com.google.inject.spi.Elements$ElementsAsModule
[WARNING]   - 563 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, commons-math3-3.4.1.jar, mango-cli-0.0.3-SNAPSHOT.jar define 1215 overlapping classes: 
[WARNING]   - org.apache.commons.math3.optim.linear.LinearOptimizer
[WARNING]   - org.apache.commons.math3.linear.LUDecomposition$Solver
[WARNING]   - org.apache.commons.math3.analysis.function.Gaussian$Parametric
[WARNING]   - org.apache.commons.math3.stat.descriptive.WeightedEvaluation
[WARNING]   - org.apache.commons.math3.analysis.FunctionUtils$3
[WARNING]   - org.apache.commons.math3.stat.descriptive.AbstractStorelessUnivariateStatistic
[WARNING]   - org.apache.commons.math3.ml.clustering.FuzzyKMeansClusterer
[WARNING]   - org.apache.commons.math3.analysis.FunctionUtils$3$1
[WARNING]   - org.apache.commons.math3.ode.nonstiff.MidpointStepInterpolator
[WARNING]   - org.apache.commons.math3.ode.ParameterConfiguration
[WARNING]   - 1205 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, mango-cli-0.0.3-SNAPSHOT.jar, xbean-asm5-shaded-4.4.jar define 81 overlapping classes: 
[WARNING]   - org.apache.xbean.asm5.FieldWriter
[WARNING]   - org.apache.xbean.asm5.commons.GeneratorAdapter
[WARNING]   - org.apache.xbean.asm5.AnnotationWriter
[WARNING]   - org.apache.xbean.asm5.tree.IntInsnNode
[WARNING]   - org.apache.xbean.asm5.Type
[WARNING]   - org.apache.xbean.asm5.commons.RemappingClassAdapter
[WARNING]   - org.apache.xbean.asm5.tree.FieldInsnNode
[WARNING]   - org.apache.xbean.asm5.tree.MultiANewArrayInsnNode
[WARNING]   - org.apache.xbean.asm5.tree.IincInsnNode
[WARNING]   - org.apache.xbean.asm5.tree.InsnList$InsnListIterator
[WARNING]   - 71 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, mango-cli-0.0.3-SNAPSHOT.jar, fastutil-6.6.5.jar define 10700 overlapping classes: 
[WARNING]   - it.unimi.dsi.fastutil.doubles.Double2IntRBTreeMap$Submap$KeySet
[WARNING]   - it.unimi.dsi.fastutil.longs.Long2CharAVLTreeMap$2$1
[WARNING]   - it.unimi.dsi.fastutil.bytes.Byte2ObjectLinkedOpenHashMap$EntryIterator
[WARNING]   - it.unimi.dsi.fastutil.shorts.Short2FloatOpenCustomHashMap$KeySet
[WARNING]   - it.unimi.dsi.fastutil.ints.Int2ReferenceRBTreeMap$Submap
[WARNING]   - it.unimi.dsi.fastutil.bytes.Byte2BooleanRBTreeMap$Submap$1
[WARNING]   - it.unimi.dsi.fastutil.floats.AbstractFloat2ShortSortedMap$ValuesCollection
[WARNING]   - it.unimi.dsi.fastutil.longs.Long2ReferenceRBTreeMap$Submap$2
[WARNING]   - it.unimi.dsi.fastutil.chars.AbstractChar2LongSortedMap$ValuesIterator
[WARNING]   - it.unimi.dsi.fastutil.doubles.DoubleHeaps
[WARNING]   - 10690 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, mango-cli-0.0.3-SNAPSHOT.jar, commons-io-2.6.jar define 127 overlapping classes: 
[WARNING]   - org.apache.commons.io.FileCleaningTracker
[WARNING]   - org.apache.commons.io.comparator.SizeFileComparator
[WARNING]   - org.apache.commons.io.input.CloseShieldInputStream
[WARNING]   - org.apache.commons.io.ByteOrderParser
[WARNING]   - org.apache.commons.io.filefilter.EmptyFileFilter
[WARNING]   - org.apache.commons.io.monitor.FileEntry
[WARNING]   - org.apache.commons.io.output.ThresholdingOutputStream
[WARNING]   - org.apache.commons.io.input.TailerListener
[WARNING]   - org.apache.commons.io.IOExceptionWithCause
[WARNING]   - org.apache.commons.io.filefilter.NotFileFilter
[WARNING]   - 117 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, mango-cli-0.0.3-SNAPSHOT.jar, scalate-core_2.11-1.8.0.jar define 1447 overlapping classes: 
[WARNING]   - org.fusesource.scalate.mustache.MustacheParser$$anonfun$open$1
[WARNING]   - org.fusesource.scalate.scuery.support.CssParser$$anonfun$attrib$3$$anonfun$apply$26
[WARNING]   - org.fusesource.scalate.support.TemplateFinder$$anonfun$org$fusesource$scalate$support$TemplateFinder$$findTemplateAlias$1$1$$anonfun$apply$3
[WARNING]   - org.fusesource.scalate.scuery.support.CssScanner$$anonfun$name$1
[WARNING]   - org.fusesource.scalate.ssp.SspParser$$anonfun$scalaExpression$3
[WARNING]   - org.fusesource.scalate.jersey.ScueryTemplateProcessor$$anonfun$writeTo$1
[WARNING]   - org.fusesource.scalate.scuery.support.InvalidCssSelectorException
[WARNING]   - org.fusesource.scalate.support.ScalaParseSupport$$anonfun$octalEscapeSeq$3
[WARNING]   - org.fusesource.scalate.scuery.support.CssParser$$anonfun$functional_nth_pseudo$4
[WARNING]   - org.fusesource.scalate.support.DefaultTemplatePackage$$anonfun$4
[WARNING]   - 1437 more...
[WARNING] scalate-util_2.11-1.8.0.jar, mango-core-0.0.3-SNAPSHOT.jar, mango-cli-0.0.3-SNAPSHOT.jar, scalate-core_2.11-1.8.0.jar define 222 overlapping classes: 
[WARNING]   - org.fusesource.scalate.util.StringResource
[WARNING]   - org.fusesource.scalate.util.SourceMap$SmapParser$$anonfun$12$$anonfun$apply$3$$anonfun$apply$19
[WARNING]   - org.fusesource.scalate.util.ClassPathBuilder$$anonfun$findManifestEntries$1$$anonfun$apply$3
[WARNING]   - org.fusesource.scalate.util.SourceMap$SmapParser$$anonfun$18
[WARNING]   - org.fusesource.scalate.util.SourceMap$SmapParser$$anonfun$12$$anonfun$apply$3$$anonfun$apply$5$$anonfun$apply$6$$anonfun$apply$9$$anonfun$apply$10
[WARNING]   - org.fusesource.scalate.util.ResourceLoader
[WARNING]   - org.fusesource.scalate.util.SourceMapStratum$$anonfun$7
[WARNING]   - org.fusesource.scalate.util.SourceMap$SmapParser$$anonfun$20$$anonfun$apply$45
[WARNING]   - org.fusesource.scalate.util.ProductReflector$
[WARNING]   - org.fusesource.scalate.util.ClassFinder$$anonfun$discoverCommandClasses$1
[WARNING]   - 212 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, jersey-container-servlet-2.22.2.jar, mango-cli-0.0.3-SNAPSHOT.jar define 6 overlapping classes: 
[WARNING]   - org.glassfish.jersey.servlet.async.AsyncContextDelegateProviderImpl
[WARNING]   - org.glassfish.jersey.servlet.async.AsyncContextDelegateProviderImpl$ExtensionImpl
[WARNING]   - org.glassfish.jersey.servlet.init.JerseyServletContainerInitializer
[WARNING]   - org.glassfish.jersey.servlet.init.FilterUrlMappingsProviderImpl
[WARNING]   - org.glassfish.jersey.servlet.async.AsyncContextDelegateProviderImpl$1
[WARNING]   - org.glassfish.jersey.servlet.init.internal.LocalizationMessages
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, jackson-module-paranamer-2.7.9.jar, mango-cli-0.0.3-SNAPSHOT.jar define 26 overlapping classes: 
[WARNING]   - com.fasterxml.jackson.module.paranamer.shaded.NullParanamer
[WARNING]   - com.fasterxml.jackson.module.paranamer.shaded.ParameterNamesNotFoundException
[WARNING]   - com.fasterxml.jackson.module.paranamer.shaded.BytecodeReadingParanamer$1
[WARNING]   - com.fasterxml.jackson.module.paranamer.shaded.BytecodeReadingParanamer$MethodCollector
[WARNING]   - com.fasterxml.jackson.module.paranamer.SerializableParanamer
[WARNING]   - com.fasterxml.jackson.module.paranamer.shaded.JavadocParanamer$DirJavadocProvider
[WARNING]   - com.fasterxml.jackson.module.paranamer.shaded.BytecodeReadingParanamer$Type
[WARNING]   - com.fasterxml.jackson.module.paranamer.ParanamerAnnotationIntrospector
[WARNING]   - com.fasterxml.jackson.module.paranamer.shaded.CachingParanamer$WithoutWeakReferences
[WARNING]   - com.fasterxml.jackson.module.paranamer.ParanamerOnJacksonAnnotationIntrospector
[WARNING]   - 16 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, mango-cli-0.0.3-SNAPSHOT.jar, aopalliance-repackaged-2.4.0-b34.jar define 17 overlapping classes: 
[WARNING]   - org.aopalliance.reflect.ClassLocator
[WARNING]   - org.aopalliance.reflect.Metadata
[WARNING]   - org.aopalliance.instrument.Instrumentation
[WARNING]   - org.aopalliance.reflect.Field
[WARNING]   - org.aopalliance.intercept.FieldInterceptor
[WARNING]   - org.aopalliance.reflect.Method
[WARNING]   - org.aopalliance.reflect.CodeLocator
[WARNING]   - org.aopalliance.intercept.FieldAccess
[WARNING]   - org.aopalliance.reflect.ProgramUnit
[WARNING]   - org.aopalliance.instrument.UndoNotSupportedException
[WARNING]   - 7 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, spark-network-common_2.11-2.3.3.jar, mango-cli-0.0.3-SNAPSHOT.jar define 1697 overlapping classes: 
[WARNING]   - org.spark_project.guava.annotations.Beta
[WARNING]   - org.spark_project.guava.util.concurrent.UncaughtExceptionHandlers$Exiter
[WARNING]   - org.spark_project.guava.eventbus.Subscribe
[WARNING]   - org.spark_project.guava.collect.TreeRangeMap
[WARNING]   - org.spark_project.guava.collect.ImmutableList$SubList
[WARNING]   - org.spark_project.guava.cache.RemovalCause$1
[WARNING]   - org.spark_project.guava.collect.ForwardingMultimap
[WARNING]   - org.spark_project.guava.io.LimitInputStream
[WARNING]   - org.spark_project.guava.math.BigIntegerMath
[WARNING]   - org.spark_project.guava.collect.Tables
[WARNING]   - 1687 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, jackson-module-scala_2.11-2.6.7.1.jar, mango-cli-0.0.3-SNAPSHOT.jar define 403 overlapping classes: 
[WARNING]   - com.fasterxml.jackson.module.scala.deser.UnsortedMapDeserializer$$anonfun$2
[WARNING]   - com.fasterxml.jackson.module.scala.deser.UnsortedSetDeserializerModule
[WARNING]   - com.fasterxml.jackson.module.scala.deser.UnsortedMapDeserializerModule$class
[WARNING]   - com.fasterxml.jackson.module.scala.JacksonModule$$anonfun$1
[WARNING]   - com.fasterxml.jackson.module.scala.deser.SortedSetDeserializer$$anonfun$4
[WARNING]   - com.fasterxml.jackson.module.scala.util.Options$class
[WARNING]   - com.fasterxml.jackson.module.scala.util.EnumResolver$
[WARNING]   - com.fasterxml.jackson.module.scala.ser.OptionSerializer$$anonfun$serialize$1
[WARNING]   - com.fasterxml.jackson.module.scala.ser.OptionSerializerModule
[WARNING]   - com.fasterxml.jackson.module.scala.modifiers.CollectionLikeTypeModifier$$anonfun$modifyType$3
[WARNING]   - 393 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, guava-27.0-jre.jar, mango-cli-0.0.3-SNAPSHOT.jar define 1955 overlapping classes: 
[WARNING]   - com.google.common.collect.CompactHashMap$Itr
[WARNING]   - com.google.common.collect.ImmutableMapValues$1
[WARNING]   - com.google.common.util.concurrent.AbstractService$5
[WARNING]   - com.google.common.io.LineProcessor
[WARNING]   - com.google.common.io.BaseEncoding$StandardBaseEncoding$2
[WARNING]   - com.google.common.io.ByteProcessor
[WARNING]   - com.google.common.math.package-info
[WARNING]   - com.google.common.util.concurrent.SimpleTimeLimiter
[WARNING]   - com.google.common.cache.AbstractCache$StatsCounter
[WARNING]   - com.google.common.util.concurrent.CycleDetectingLockFactory$Policies
[WARNING]   - 1945 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, json4s-core_2.11-3.2.11.jar, mango-cli-0.0.3-SNAPSHOT.jar define 407 overlapping classes: 
[WARNING]   - org.json4s.CustomSerializer
[WARNING]   - org.json4s.reflect.Reflector$ClassDescriptorBuilder$$anonfun$constructorsAndCompanion$3$$anonfun$13$$anonfun$apply$3
[WARNING]   - org.json4s.reflect.package$$anon$2
[WARNING]   - org.json4s.DefaultReaders$JValueReader$
[WARNING]   - org.json4s.StreamingJsonWriter$$anonfun$addJValue$1
[WARNING]   - org.json4s.ParserUtil$RecycledSegment
[WARNING]   - org.json4s.package
[WARNING]   - org.json4s.DefaultReaders$
[WARNING]   - org.json4s.Xml$$anonfun$directChildren$1$1
[WARNING]   - org.json4s.JDoubleJObjectJsonWriter
[WARNING]   - 397 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, commons-compress-1.4.1.jar, mango-cli-0.0.3-SNAPSHOT.jar define 129 overlapping classes: 
[WARNING]   - org.apache.commons.compress.archivers.dump.ShortFileException
[WARNING]   - org.apache.commons.compress.utils.CountingInputStream
[WARNING]   - org.apache.commons.compress.compressors.bzip2.BZip2CompressorOutputStream
[WARNING]   - org.apache.commons.compress.compressors.bzip2.CRC
[WARNING]   - org.apache.commons.compress.archivers.dump.DumpArchiveEntry
[WARNING]   - org.apache.commons.compress.compressors.bzip2.BlockSort
[WARNING]   - org.apache.commons.compress.archivers.tar.TarArchiveEntry
[WARNING]   - org.apache.commons.compress.archivers.dump.UnsupportedCompressionAlgorithmException
[WARNING]   - org.apache.commons.compress.archivers.zip.AbstractUnicodeExtraField
[WARNING]   - org.apache.commons.compress.archivers.dump.InvalidFormatException
[WARNING]   - 119 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, commons-logging-1.1.1.jar, mango-cli-0.0.3-SNAPSHOT.jar, jcl-over-slf4j-1.7.16.jar define 6 overlapping classes: 
[WARNING]   - org.apache.commons.logging.impl.SimpleLog$1
[WARNING]   - org.apache.commons.logging.Log
[WARNING]   - org.apache.commons.logging.impl.SimpleLog
[WARNING]   - org.apache.commons.logging.LogConfigurationException
[WARNING]   - org.apache.commons.logging.impl.NoOpLog
[WARNING]   - org.apache.commons.logging.LogFactory
[WARNING] curator-client-2.6.0.jar, mango-core-0.0.3-SNAPSHOT.jar, mango-cli-0.0.3-SNAPSHOT.jar define 56 overlapping classes: 
[WARNING]   - org.apache.curator.HandleHolder$Helper
[WARNING]   - org.apache.curator.utils.PathUtils
[WARNING]   - org.apache.curator.ensemble.exhibitor.ExhibitorEnsembleProvider$1
[WARNING]   - org.apache.curator.utils.CloseableScheduledExecutorService
[WARNING]   - org.apache.curator.utils.EnsurePath$InitialHelper$1
[WARNING]   - org.apache.curator.SessionFailRetryLoop$2
[WARNING]   - org.apache.curator.utils.ZKPaths$PathAndNode
[WARNING]   - org.apache.curator.ensemble.exhibitor.DefaultExhibitorRestClient
[WARNING]   - org.apache.curator.TimeTrace
[WARNING]   - org.apache.curator.HandleHolder$1$1
[WARNING]   - 46 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, hk2-api-2.4.0-b34.jar, mango-cli-0.0.3-SNAPSHOT.jar define 165 overlapping classes: 
[WARNING]   - org.glassfish.hk2.api.ActiveDescriptor
[WARNING]   - org.glassfish.hk2.api.Proxiable
[WARNING]   - org.glassfish.hk2.utilities.InjecteeImpl
[WARNING]   - org.glassfish.hk2.api.ProxyCtl
[WARNING]   - org.glassfish.hk2.api.DynamicConfiguration
[WARNING]   - org.glassfish.hk2.internal.ImmediateHelper$1
[WARNING]   - org.glassfish.hk2.api.InjectionResolver
[WARNING]   - org.glassfish.hk2.utilities.ServiceLocatorUtilities$3
[WARNING]   - org.glassfish.hk2.api.Validator
[WARNING]   - org.glassfish.hk2.api.PopulatorPostProcessor
[WARNING]   - 155 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, jsr305-1.3.9.jar, mango-cli-0.0.3-SNAPSHOT.jar define 35 overlapping classes: 
[WARNING]   - javax.annotation.RegEx
[WARNING]   - javax.annotation.concurrent.Immutable
[WARNING]   - javax.annotation.meta.TypeQualifierDefault
[WARNING]   - javax.annotation.meta.TypeQualifier
[WARNING]   - javax.annotation.Syntax
[WARNING]   - javax.annotation.CheckReturnValue
[WARNING]   - javax.annotation.CheckForNull
[WARNING]   - javax.annotation.Nonnull
[WARNING]   - javax.annotation.meta.TypeQualifierNickname
[WARNING]   - javax.annotation.MatchesPattern
[WARNING]   - 25 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, commons-net-2.2.jar, mango-cli-0.0.3-SNAPSHOT.jar define 137 overlapping classes: 
[WARNING]   - org.apache.commons.net.telnet.SimpleOptionHandler
[WARNING]   - org.apache.commons.net.ftp.parser.FTPFileEntryParserFactory
[WARNING]   - org.apache.commons.net.DefaultDatagramSocketFactory
[WARNING]   - org.apache.commons.net.ftp.parser.ConfigurableFTPFileEntryParserImpl
[WARNING]   - org.apache.commons.net.ntp.NTPUDPClient
[WARNING]   - org.apache.commons.net.util.SubnetUtils$1
[WARNING]   - org.apache.commons.net.tftp.TFTP
[WARNING]   - org.apache.commons.net.ftp.FTPClient
[WARNING]   - org.apache.commons.net.echo.EchoTCPClient
[WARNING]   - org.apache.commons.net.telnet.Telnet
[WARNING]   - 127 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, mango-cli-0.0.3-SNAPSHOT.jar, parquet-scala_2.10-1.8.3.jar define 19 overlapping classes: 
[WARNING]   - org.apache.parquet.filter2.dsl.Dsl$SupportsEqNotEq
[WARNING]   - org.apache.parquet.filter2.dsl.Dsl$FloatColumn$
[WARNING]   - org.apache.parquet.filter2.dsl.Dsl$DoubleColumn
[WARNING]   - org.apache.parquet.filter2.dsl.Dsl$Column$class
[WARNING]   - org.apache.parquet.filter2.dsl.Dsl
[WARNING]   - org.apache.parquet.filter2.dsl.Dsl$FloatColumn
[WARNING]   - org.apache.parquet.filter2.dsl.Dsl$LongColumn
[WARNING]   - org.apache.parquet.filter2.dsl.Dsl$BinaryColumn
[WARNING]   - org.apache.parquet.filter2.dsl.Dsl$IntColumn$
[WARNING]   - org.apache.parquet.filter2.dsl.Dsl$DoubleColumn$
[WARNING]   - 9 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, mango-cli-0.0.3-SNAPSHOT.jar, jetty-webapp-9.4.15.v20190215.jar define 51 overlapping classes: 
[WARNING]   - org.eclipse.jetty.webapp.FragmentDescriptor
[WARNING]   - org.eclipse.jetty.webapp.CachingWebAppClassLoader
[WARNING]   - org.eclipse.jetty.webapp.ClasspathPattern$ClassEntry
[WARNING]   - org.eclipse.jetty.webapp.WebAppContext
[WARNING]   - org.eclipse.jetty.webapp.ClasspathPattern$ByClass
[WARNING]   - org.eclipse.jetty.webapp.CloneConfiguration
[WARNING]   - org.eclipse.jetty.webapp.RelativeOrdering$1
[WARNING]   - org.eclipse.jetty.webapp.Configuration$ClassList
[WARNING]   - org.eclipse.jetty.webapp.ClasspathPattern$ByModule
[WARNING]   - org.eclipse.jetty.webapp.StandardDescriptorProcessor$1
[WARNING]   - 41 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, mango-cli-0.0.3-SNAPSHOT.jar, jetty-server-9.4.15.v20190215.jar define 302 overlapping classes: 
[WARNING]   - org.eclipse.jetty.server.handler.ThreadLimitHandler$RFC7239
[WARNING]   - org.eclipse.jetty.server.handler.ManagedAttributeListener
[WARNING]   - org.eclipse.jetty.server.ServletRequestHttpWrapper
[WARNING]   - org.eclipse.jetty.server.DebugListener$1
[WARNING]   - org.eclipse.jetty.server.ShutdownMonitor$1
[WARNING]   - org.eclipse.jetty.server.HttpInput$1
[WARNING]   - org.eclipse.jetty.server.UserIdentity$Scope
[WARNING]   - org.eclipse.jetty.server.AcceptRateLimit$1
[WARNING]   - org.eclipse.jetty.server.session.AbstractSessionDataStoreFactory
[WARNING]   - org.eclipse.jetty.server.AsyncContextState$1
[WARNING]   - 292 more...
[WARNING] bcprov-jdk15on-1.52.jar, mango-core-0.0.3-SNAPSHOT.jar, mango-cli-0.0.3-SNAPSHOT.jar define 2430 overlapping classes: 
[WARNING]   - org.bouncycastle.crypto.modes.gcm.Tables8kGCMMultiplier
[WARNING]   - org.bouncycastle.crypto.tls.HeartbeatMode
[WARNING]   - org.bouncycastle.pqc.math.linearalgebra.GF2nPolynomialElement
[WARNING]   - org.bouncycastle.jcajce.provider.asymmetric.ecgost.KeyFactorySpi
[WARNING]   - org.bouncycastle.jcajce.provider.symmetric.AES$AlgParamsCCM
[WARNING]   - org.bouncycastle.asn1.tsp.TimeStampResp
[WARNING]   - org.bouncycastle.jcajce.provider.digest.SHA384$Mappings
[WARNING]   - org.bouncycastle.jcajce.provider.asymmetric.elgamal.AlgorithmParameterGeneratorSpi
[WARNING]   - org.bouncycastle.asn1.x509.CRLNumber
[WARNING]   - org.bouncycastle.jcajce.provider.digest.SM3
[WARNING]   - 2420 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, mango-cli-0.0.3-SNAPSHOT.jar, jets3t-0.9.4.jar define 616 overlapping classes: 
[WARNING]   - org.jets3t.service.acl.GroupGrantee
[WARNING]   - org.jets3t.service.multithread.CreateObjectsEvent
[WARNING]   - org.jets3t.service.model.S3BucketLoggingStatus
[WARNING]   - contribs.com.centerkey.utils.BareBonesBrowserLaunch
[WARNING]   - org.jets3t.service.impl.rest.CloudFrontXmlResponsesSaxParser$CacheBehaviorHandler
[WARNING]   - org.jets3t.apps.uploader.XmlGenerator$ObjectAndSignatureRequestDetails
[WARNING]   - org.jets3t.service.MultipartUploadChunk
[WARNING]   - org.jets3t.apps.cockpit.Cockpit$27
[WARNING]   - org.jets3t.service.model.S3DeleteMarker
[WARNING]   - org.jets3t.gui.TableSorter$Row
[WARNING]   - 606 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, guava-27.0-jre.jar, mango-cli-0.0.3-SNAPSHOT.jar, failureaccess-1.0.jar define 2 overlapping classes: 
[WARNING]   - com.google.common.util.concurrent.internal.InternalFutureFailureAccess
[WARNING]   - com.google.common.util.concurrent.internal.InternalFutures
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, checker-qual-2.5.2.jar, mango-cli-0.0.3-SNAPSHOT.jar define 302 overlapping classes: 
[WARNING]   - org.checkerframework.checker.formatter.FormatUtil
[WARNING]   - org.checkerframework.checker.units.qual.MixedUnits
[WARNING]   - org.checkerframework.checker.units.qual.PolyUnit
[WARNING]   - org.checkerframework.checker.regex.qual.PolyRegex
[WARNING]   - org.checkerframework.checker.units.qual.C
[WARNING]   - org.checkerframework.checker.formatter.FormatUtil$IllegalFormatConversionCategoryException
[WARNING]   - org.checkerframework.framework.qual.Unqualified
[WARNING]   - org.checkerframework.common.reflection.qual.UnknownMethod
[WARNING]   - org.checkerframework.framework.qual.EnsuresQualifierIf
[WARNING]   - org.checkerframework.checker.signedness.SignednessUtil
[WARNING]   - 292 more...
[WARNING] jackson-core-asl-1.9.13.jar, mango-core-0.0.3-SNAPSHOT.jar, mango-cli-0.0.3-SNAPSHOT.jar define 121 overlapping classes: 
[WARNING]   - org.codehaus.jackson.annotate.JsonManagedReference
[WARNING]   - org.codehaus.jackson.util.DefaultPrettyPrinter$FixedSpaceIndenter
[WARNING]   - org.codehaus.jackson.JsonGenerationException
[WARNING]   - org.codehaus.jackson.util.BufferRecycler$CharBufferType
[WARNING]   - org.codehaus.jackson.io.UTF32Reader
[WARNING]   - org.codehaus.jackson.sym.Name1
[WARNING]   - org.codehaus.jackson.util.MinimalPrettyPrinter
[WARNING]   - org.codehaus.jackson.impl.JsonParserBase
[WARNING]   - org.codehaus.jackson.annotate.JsonValue
[WARNING]   - org.codehaus.jackson.sym.CharsToNameCanonicalizer$Bucket
[WARNING]   - 111 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, snappy-java-1.0.5.jar, mango-cli-0.0.3-SNAPSHOT.jar define 12 overlapping classes: 
[WARNING]   - org.xerial.snappy.SnappyLoader
[WARNING]   - org.xerial.snappy.SnappyOutputStream
[WARNING]   - org.xerial.snappy.SnappyErrorCode
[WARNING]   - org.xerial.snappy.SnappyBundleActivator
[WARNING]   - org.xerial.snappy.SnappyError
[WARNING]   - org.xerial.snappy.SnappyNativeAPI
[WARNING]   - org.xerial.snappy.SnappyException
[WARNING]   - org.xerial.snappy.Snappy
[WARNING]   - org.xerial.snappy.SnappyNative
[WARNING]   - org.xerial.snappy.OSInfo
[WARNING]   - 2 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, javax.servlet-api-3.1.0.jar, mango-cli-0.0.3-SNAPSHOT.jar define 79 overlapping classes: 
[WARNING]   - javax.servlet.http.Cookie
[WARNING]   - javax.servlet.ServletContext
[WARNING]   - javax.servlet.Registration
[WARNING]   - javax.servlet.http.HttpSessionListener
[WARNING]   - javax.servlet.http.HttpSessionContext
[WARNING]   - javax.servlet.FilterChain
[WARNING]   - javax.servlet.http.WebConnection
[WARNING]   - javax.servlet.http.HttpServletRequestWrapper
[WARNING]   - javax.servlet.http.HttpSessionAttributeListener
[WARNING]   - javax.servlet.annotation.HandlesTypes
[WARNING]   - 69 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, jetty-xml-9.4.15.v20190215.jar, mango-cli-0.0.3-SNAPSHOT.jar define 14 overlapping classes: 
[WARNING]   - org.eclipse.jetty.xml.ConfigurationProcessorFactory
[WARNING]   - org.eclipse.jetty.xml.XmlParser$Node
[WARNING]   - org.eclipse.jetty.xml.XmlConfiguration$JettyXmlConfiguration$AttrOrElementNode
[WARNING]   - org.eclipse.jetty.xml.XmlConfiguration$JettyXmlConfiguration
[WARNING]   - org.eclipse.jetty.xml.ConfigurationProcessor
[WARNING]   - org.eclipse.jetty.xml.XmlParser$Handler
[WARNING]   - org.eclipse.jetty.xml.XmlConfiguration
[WARNING]   - org.eclipse.jetty.xml.XmlConfiguration$1
[WARNING]   - org.eclipse.jetty.xml.XmlConfiguration$JettyXmlConfiguration$1
[WARNING]   - org.eclipse.jetty.xml.XmlParser
[WARNING]   - 4 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, servo-core-0.12.12.jar, mango-cli-0.0.3-SNAPSHOT.jar define 162 overlapping classes: 
[WARNING]   - com.netflix.servo.util.Objects
[WARNING]   - com.netflix.servo.util.Clock
[WARNING]   - com.netflix.servo.monitor.MaxGauge
[WARNING]   - com.netflix.servo.publish.LocalJmxConnector
[WARNING]   - com.netflix.servo.publish.MonitorRegistryMetricPoller$MonitorValueCallable
[WARNING]   - com.netflix.servo.util.ExpiringCache$Entry
[WARNING]   - com.netflix.servo.util.ThreadCpuStats$CpuUsage
[WARNING]   - com.netflix.servo.tag.SmallTagMap$Builder
[WARNING]   - com.netflix.servo.stats.StatsConfig
[WARNING]   - com.netflix.servo.monitor.Monitors$CounterFactory
[WARNING]   - 152 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, lift-json_2.11-3.0.1.jar, mango-cli-0.0.3-SNAPSHOT.jar define 368 overlapping classes: 
[WARNING]   - net.liftweb.json.TypeHints$CompositeTypeHints$$anonfun$deserialize$2
[WARNING]   - net.liftweb.json.JsonAST$RenderSettings$$anonfun$2
[WARNING]   - net.liftweb.json.TypeInfo$
[WARNING]   - net.liftweb.json.JsonAST$JString$
[WARNING]   - net.liftweb.json.JsonAST$RenderSettings$
[WARNING]   - net.liftweb.json.JsonParser$OpenArr$
[WARNING]   - net.liftweb.json.Meta$
[WARNING]   - net.liftweb.json.TypeHints$CompositeTypeHints$$anonfun$net$liftweb$json$TypeHints$CompositeTypeHints$$hasClass$1$3
[WARNING]   - net.liftweb.json.JsonAST$JDouble$
[WARNING]   - net.liftweb.json.Extraction$$anonfun$net$liftweb$json$Extraction$$submap$1$1
[WARNING]   - 358 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, adam-core-spark2_2.11-0.26.0.jar, mango-cli-0.0.3-SNAPSHOT.jar define 2708 overlapping classes: 
[WARNING]   - org.bdgenomics.adam.converters.VariantContextConverter$$anonfun$74$$anonfun$apply$77
[WARNING]   - org.bdgenomics.adam.rdd.feature.FeatureDataset$$anonfun$filterToTranscript$2$$anonfun$apply$9$$anonfun$apply$10
[WARNING]   - org.bdgenomics.adam.rdd.read.AlignmentRecordDataset$$typecreator9$1
[WARNING]   - org.bdgenomics.adam.sql.VariantCallingAnnotations$$anonfun$toAvro$58
[WARNING]   - org.bdgenomics.adam.converters.VariantContextConverter$$anonfun$63
[WARNING]   - org.bdgenomics.adam.rdd.feature.DatasetBoundFeatureDataset$$anonfun$filterByAttribute$1
[WARNING]   - org.bdgenomics.adam.io.InterleavedFastqInputFormat
[WARNING]   - org.bdgenomics.adam.util.FileMerger$$anonfun$mergeFilesAcrossFilesystems$4
[WARNING]   - org.bdgenomics.adam.rdd.fragment.DatasetBoundFragmentDataset
[WARNING]   - org.bdgenomics.adam.sql.VariantAnnotation$$anonfun$fromAvro$80
[WARNING]   - 2698 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, convert-0.6.0.jar, mango-cli-0.0.3-SNAPSHOT.jar define 23 overlapping classes: 
[WARNING]   - org.bdgenomics.convert.bdgenomics.SliceToRead
[WARNING]   - org.bdgenomics.convert.bdgenomics.SliceToSequence
[WARNING]   - org.bdgenomics.convert.bdgenomics.BdgenomicsModule
[WARNING]   - org.bdgenomics.convert.ConversionException
[WARNING]   - org.bdgenomics.convert.bdgenomics.OntologyTermToString
[WARNING]   - org.bdgenomics.convert.bdgenomics.StringToVariantAnnotationMessage
[WARNING]   - org.bdgenomics.convert.ConversionStringency
[WARNING]   - org.bdgenomics.convert.bdgenomics.ReadToSlice
[WARNING]   - org.bdgenomics.convert.Converter
[WARNING]   - org.bdgenomics.convert.bdgenomics.ReadToSequence
[WARNING]   - 13 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, mango-cli-0.0.3-SNAPSHOT.jar, curator-recipes-2.6.0.jar define 190 overlapping classes: 
[WARNING]   - org.apache.curator.framework.recipes.atomic.DistributedAtomicNumber
[WARNING]   - org.apache.curator.framework.recipes.locks.Reaper$State
[WARNING]   - org.apache.curator.framework.recipes.locks.InterProcessReadWriteLock
[WARNING]   - org.apache.curator.framework.recipes.queue.QueueBase
[WARNING]   - org.apache.curator.framework.recipes.locks.ChildReaper$1
[WARNING]   - org.apache.curator.framework.recipes.cache.Operation
[WARNING]   - org.apache.curator.framework.recipes.shared.SharedValue$1
[WARNING]   - org.apache.curator.framework.recipes.locks.Revoker
[WARNING]   - org.apache.curator.framework.recipes.queue.QueueSharderPolicies
[WARNING]   - org.apache.curator.framework.recipes.locks.StandardLockInternalsDriver
[WARNING]   - 180 more...
[WARNING] mango-core-0.0.3-SNAPSHOT.jar, mango-cli-0.0.3-SNAPSHOT.jar, grizzled-slf4j_2.11-1.0.2.jar define 4 overlapping classes: 
[WARNING]   - grizzled.slf4j.Logger$
[WARNING]   - grizzled.slf4j.Logging
[WARNING]   - grizzled.slf4j.Logging$class
[WARNING]   - grizzled.slf4j.Logger
[WARNING] spark-unsafe_2.11-2.3.3.jar, mango-core-0.0.3-SNAPSHOT.jar, mango-cli-0.0.3-SNAPSHOT.jar define 18 overlapping classes: 
[WARNING]   - org.apache.spark.unsafe.types.UTF8String
[WARNING]   - org.apache.spark.unsafe.memory.HeapMemoryAllocator
[WARNING]   - org.apache.spark.unsafe.array.LongArray
[WARNING]   - org.apache.spark.unsafe.types.UTF8String$LongWrapper
[WARNING]   - org.apache.spark.unsafe.bitset.BitSetMethods
[WARNING]   - org.apache.spark.unsafe.memory.UnsafeMemoryAllocator
[WARNING]   - org.apache.spark.sql.catalyst.expressions.HiveHasher
[WARNING]   - org.apache.spark.unsafe.KVIterator
[WARNING]   - org.apache.spark.unsafe.types.CalendarInterval
[WARNING]   - org.apache.spark.unsafe.memory.MemoryBlock
[WARNING]   - 8 more...
[WARNING] maven-shade-plugin has detected that some class files are
[WARNING] present in two or more JARs. When this happens, only one
[WARNING] single version of the class is copied to the uber jar.
[WARNING] Usually this is not harmful and you can skip these warnings,
[WARNING] otherwise try to manually exclude artifacts based on
[WARNING] mvn dependency:tree -Ddetail=true and the above output.
[WARNING] See http://maven.apache.org/plugins/maven-shade-plugin/
[INFO] Replacing original artifact with shaded artifact.
[INFO] Replacing /tmp/mangoTestIdIx9Su/deleteMePleaseThisIsNoLongerNeeded/mango-assembly/target/mango-assembly-0.0.3-SNAPSHOT.jar with /tmp/mangoTestIdIx9Su/deleteMePleaseThisIsNoLongerNeeded/mango-assembly/target/mango-assembly-0.0.3-SNAPSHOT-shaded.jar
[INFO] 
[INFO] --- maven-source-plugin:3.0.1:jar-no-fork (attach-sources) @ mango-assembly ---
[INFO] 
[INFO] --- maven-javadoc-plugin:3.1.0:jar (attach-javadocs) @ mango-assembly ---
[INFO] 
[INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ mango-assembly >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ mango-assembly ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ mango-assembly ---
[INFO] 
[INFO] --- git-commit-id-plugin:2.2.1:revision (default) @ mango-assembly ---
[INFO] 
[INFO] --- templating-maven-plugin:1.0.0:filter-sources (filter-src) @ mango-assembly ---
[INFO] Request to add '/tmp/mangoTestIdIx9Su/deleteMePleaseThisIsNoLongerNeeded/mango-assembly/src/main/java-templates' folder. Not added since it does not exist.
[INFO] 
[INFO] --- build-helper-maven-plugin:1.10:add-source (add-source) @ mango-assembly ---
[INFO] Source directory: /tmp/mangoTestIdIx9Su/deleteMePleaseThisIsNoLongerNeeded/mango-assembly/src/main/scala added.
[INFO] 
[INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ mango-assembly <<<
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ mango-assembly ---
model contains 6 documentable templates
[INFO] Building jar: /tmp/mangoTestIdIx9Su/deleteMePleaseThisIsNoLongerNeeded/mango-assembly/target/mango-assembly-0.0.3-SNAPSHOT-javadoc.jar
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building mango: Distribution 0.0.3-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ mango-distribution ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ mango-distribution ---
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default) @ mango-distribution ---
[INFO] Modified 0 of 0 .scala files
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ mango-distribution ---
[INFO] No sources to compile
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ mango-distribution ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-shade-plugin:3.1.0:shade (default) @ mango-distribution ---
[INFO] Replacing original artifact with shaded artifact.
[INFO] 
[INFO] --- maven-source-plugin:3.0.1:jar-no-fork (attach-sources) @ mango-distribution ---
[INFO] 
[INFO] --- maven-javadoc-plugin:3.1.0:jar (attach-javadocs) @ mango-distribution ---
[INFO] 
[INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ mango-distribution >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ mango-distribution ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ mango-distribution ---
[INFO] 
[INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ mango-distribution <<<
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ mango-distribution ---
[INFO] No source files found
[INFO] 
[INFO] --- maven-assembly-plugin:2.4.1:single (default) @ mango-distribution ---
[INFO] Reading assembly descriptor: src/main/assembly/assembly.xml
[INFO] Building tar: /tmp/mangoTestIdIx9Su/deleteMePleaseThisIsNoLongerNeeded/mango-distribution/target/mango-distribution-0.0.3-SNAPSHOT-bin.tar.gz
[INFO] Building tar: /tmp/mangoTestIdIx9Su/deleteMePleaseThisIsNoLongerNeeded/mango-distribution/target/mango-distribution-0.0.3-SNAPSHOT-bin.tar.bz2
[INFO] Building zip: /tmp/mangoTestIdIx9Su/deleteMePleaseThisIsNoLongerNeeded/mango-distribution/target/mango-distribution-0.0.3-SNAPSHOT-bin.zip
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO] 
[INFO] mango .............................................. SUCCESS [  6.040 s]
[INFO] mango: CORE ........................................ SUCCESS [01:14 min]
[INFO] Mango: Python APIs ................................. SUCCESS [01:41 min]
[INFO] mango: CLI ......................................... SUCCESS [01:30 min]
[INFO] Mango: Assembly .................................... SUCCESS [01:04 min]
[INFO] mango: Distribution ................................ SUCCESS [ 47.978 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESS
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 06:25 min
[INFO] Finished at: 2019-05-13T14:52:42-07:00
[INFO] Final Memory: 93M/1503M
[INFO] ------------------------------------------------------------------------
+ pushd mango-python
/tmp/mangoTestIdIx9Su/deleteMePleaseThisIsNoLongerNeeded/mango-python /tmp/mangoTestIdIx9Su/deleteMePleaseThisIsNoLongerNeeded ~/workspace/mango/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.3.3/label/ubuntu
+ make clean
pip uninstall -y bdgenomics.mango
Can't uninstall 'bdgenomics.mango'. No files were found to uninstall.
rm -rf src/*.egg-info
rm -rf build/
+ popd
/tmp/mangoTestIdIx9Su/deleteMePleaseThisIsNoLongerNeeded ~/workspace/mango/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.3.3/label/ubuntu
+ pushd mango-viz
/tmp/mangoTestIdIx9Su/deleteMePleaseThisIsNoLongerNeeded/mango-viz /tmp/mangoTestIdIx9Su/deleteMePleaseThisIsNoLongerNeeded ~/workspace/mango/HADOOP_VERSION/2.7.5/SCALAVER/2.11/SPARK_VERSION/2.3.3/label/ubuntu
+ make prepare
pip install pytest==2.8.3
Collecting pytest==2.8.3
  Using cached https://files.pythonhosted.org/packages/b0/7b/7aa01fa919ca0d038cdf8744ba9fd0416b04ec1878a68bfd77f39534e408/pytest-2.8.3-py2.py3-none-any.whl
Requirement already satisfied: py>=1.4.29 in /home/jenkins/anaconda2/lib/python2.7/site-packages (from pytest==2.8.3) (1.4.31)
Installing collected packages: pytest
  Found existing installation: pytest 2.9.2
    Uninstalling pytest-2.9.2:
      Successfully uninstalled pytest-2.9.2
Successfully installed pytest-2.8.3
You are using pip version 18.1, however version 19.1.1 is available.
You should consider upgrading via the 'pip install --upgrade pip' command.
pip install jupyter==1.0.0
Requirement already satisfied: jupyter==1.0.0 in /home/jenkins/anaconda2/lib/python2.7/site-packages (1.0.0)
You are using pip version 18.1, however version 19.1.1 is available.
You should consider upgrading via the 'pip install --upgrade pip' command.
pip install ipywidgets==7.0.0
Collecting ipywidgets==7.0.0
  Using cached https://files.pythonhosted.org/packages/14/ea/793f6588d5be295d103fb868e26ba8671686b70bd855a21d02302f8dcd37/ipywidgets-7.0.0-py2.py3-none-any.whl
Collecting nbformat>=4.2.0 (from ipywidgets==7.0.0)
  Using cached https://files.pythonhosted.org/packages/da/27/9a654d2b6cc1eaa517d1c5a4405166c7f6d72f04f6e7eea41855fe808a46/nbformat-4.4.0-py2.py3-none-any.whl
Requirement already satisfied: ipython<6.0.0,>=4.0.0; python_version < "3.3" in /home/jenkins/anaconda2/lib/python2.7/site-packages (from ipywidgets==7.0.0) (5.1.0)
Collecting ipykernel>=4.5.1 (from ipywidgets==7.0.0)
  Using cached https://files.pythonhosted.org/packages/00/47/764e4fa1b1b89598426b8d79b1c4fbe8042432621b0f8e1991aeb3c24806/ipykernel-4.10.0-py2-none-any.whl
Collecting widgetsnbextension~=3.0.0 (from ipywidgets==7.0.0)
  Using cached https://files.pythonhosted.org/packages/8d/f2/c8bcccccbed39d51d3e237fb0c0f0c9bbc845d12afc41f5ca5f5728fffc7/widgetsnbextension-3.0.8-py2.py3-none-any.whl
Collecting traitlets>=4.3.1 (from ipywidgets==7.0.0)
  Using cached https://files.pythonhosted.org/packages/93/d6/abcb22de61d78e2fc3959c964628a5771e47e7cc60d53e9342e21ed6cc9a/traitlets-4.3.2-py2.py3-none-any.whl
Requirement already satisfied: jupyter-core in /home/jenkins/anaconda2/lib/python2.7/site-packages (from nbformat>=4.2.0->ipywidgets==7.0.0) (4.2.0)
Requirement already satisfied: ipython-genutils in /home/jenkins/anaconda2/lib/python2.7/site-packages (from nbformat>=4.2.0->ipywidgets==7.0.0) (0.1.0)
Requirement already satisfied: jsonschema!=2.5.0,>=2.4 in /home/jenkins/anaconda2/lib/python2.7/site-packages (from nbformat>=4.2.0->ipywidgets==7.0.0) (2.5.1)
Requirement already satisfied: tornado>=4.0 in /home/jenkins/anaconda2/lib/python2.7/site-packages (from ipykernel>=4.5.1->ipywidgets==7.0.0) (4.4.1)
Requirement already satisfied: jupyter-client in /home/jenkins/anaconda2/lib/python2.7/site-packages (from ipykernel>=4.5.1->ipywidgets==7.0.0) (4.4.0)
Collecting notebook>=4.4.1 (from widgetsnbextension~=3.0.0->ipywidgets==7.0.0)
  Using cached https://files.pythonhosted.org/packages/f6/36/89ebfffc9dd8c8dbd81c1ffb53e3d4233ee666414c143959477cb07cc5f5/notebook-5.7.8-py2.py3-none-any.whl
Requirement already satisfied: enum34; python_version == "2.7" in /home/jenkins/anaconda2/lib/python2.7/site-packages (from traitlets>=4.3.1->ipywidgets==7.0.0) (1.1.6)
Requirement already satisfied: six in /home/jenkins/anaconda2/lib/python2.7/site-packages (from traitlets>=4.3.1->ipywidgets==7.0.0) (1.11.0)
Requirement already satisfied: decorator in /home/jenkins/anaconda2/lib/python2.7/site-packages (from traitlets>=4.3.1->ipywidgets==7.0.0) (4.0.10)
Requirement already satisfied: functools32 in /home/jenkins/anaconda2/lib/python2.7/site-packages (from jsonschema!=2.5.0,>=2.4->nbformat>=4.2.0->ipywidgets==7.0.0) (3.2.3.post2)
Collecting Send2Trash (from notebook>=4.4.1->widgetsnbextension~=3.0.0->ipywidgets==7.0.0)
Collecting prometheus-client (from notebook>=4.4.1->widgetsnbextension~=3.0.0->ipywidgets==7.0.0)
Requirement already satisfied: nbconvert in /home/jenkins/anaconda2/lib/python2.7/site-packages (from notebook>=4.4.1->widgetsnbextension~=3.0.0->ipywidgets==7.0.0) (4.2.0)
Collecting pyzmq>=17 (from notebook>=4.4.1->widgetsnbextension~=3.0.0->ipywidgets==7.0.0)
  Using cached https://files.pythonhosted.org/packages/91/f5/c9bef3768d6f8d71aae8f44f1ddbee90162dad909560fa6c13e4872e28c9/pyzmq-18.0.1-cp27-cp27mu-manylinux1_x86_64.whl
Requirement already satisfied: jinja2 in /home/jenkins/anaconda2/lib/python2.7/site-packages (from notebook>=4.4.1->widgetsnbextension~=3.0.0->ipywidgets==7.0.0) (2.8)
Collecting terminado>=0.8.1 (from notebook>=4.4.1->widgetsnbextension~=3.0.0->ipywidgets==7.0.0)
  Using cached https://files.pythonhosted.org/packages/a7/56/80ea7fa66565fa75ae21ce0c16bc90067530e5d15e48854afcc86585a391/terminado-0.8.2-py2.py3-none-any.whl
Requirement already satisfied: ipaddress; python_version == "2.7" in /home/jenkins/anaconda2/lib/python2.7/site-packages (from notebook>=4.4.1->widgetsnbextension~=3.0.0->ipywidgets==7.0.0) (1.0.18)
Requirement already satisfied: MarkupSafe in /home/jenkins/anaconda2/lib/python2.7/site-packages (from jinja2->notebook>=4.4.1->widgetsnbextension~=3.0.0->ipywidgets==7.0.0) (0.23)
Requirement already satisfied: ptyprocess; os_name != "nt" in /home/jenkins/anaconda2/lib/python2.7/site-packages (from terminado>=0.8.1->notebook>=4.4.1->widgetsnbextension~=3.0.0->ipywidgets==7.0.0) (0.5.1)
notebook 5.7.8 has requirement jupyter-client>=5.2.0, but you'll have jupyter-client 4.4.0 which is incompatible.
notebook 5.7.8 has requirement jupyter-core>=4.4.0, but you'll have jupyter-core 4.2.0 which is incompatible.
Installing collected packages: traitlets, nbformat, ipykernel, Send2Trash, prometheus-client, pyzmq, terminado, notebook, widgetsnbextension, ipywidgets
  Found existing installation: traitlets 4.3.0
Cannot uninstall 'traitlets'. It is a distutils installed project and thus we cannot accurately determine which files belong to it which would lead to only a partial uninstall.
You are using pip version 18.1, however version 19.1.1 is available.
You should consider upgrading via the 'pip install --upgrade pip' command.
Makefile:103: recipe for target 'prepare' failed
make: *** [prepare] Error 1
Build step 'Execute shell' marked build as failure
Sending e-mails to: akmorrow@berkeley.edu
Finished: FAILURE