SuccessConsole Output

Started by upstream project "quinine" build number 3953
originally caused by:
 Started by upstream project "ADAM" build number 4211
 originally caused by:
  Started by GitHub push by heuermh
[EnvInject] - Loading node environment variables.
Building remotely on amp-jenkins-worker-01 (spark-packaging spark-compile spark-experimental-docker spark-release spark-docs centos) in workspace /home/jenkins/workspace/quinine/hadoop.version/1.0.4/label/centos
 > git rev-parse --is-inside-work-tree # timeout=10
Fetching changes from the remote Git repository
 > git config remote.origin.url https://github.com/bigdatagenomics/quinine.git # timeout=10
Fetching upstream changes from https://github.com/bigdatagenomics/quinine.git
 > git --version # timeout=10
 > git fetch --tags --progress https://github.com/bigdatagenomics/quinine.git +refs/heads/*:refs/remotes/origin/*
Checking out Revision 31b91e2d60ebedf732f8cf34d3dc1bf78bb428af (refs/remotes/origin/master)
 > git config core.sparsecheckout # timeout=10
 > git checkout -f 31b91e2d60ebedf732f8cf34d3dc1bf78bb428af
 > git rev-list 31b91e2d60ebedf732f8cf34d3dc1bf78bb428af # timeout=10
[centos] $ /home/jenkins/tools/hudson.tasks.Maven_MavenInstallation/Maven_3.1.1/bin/mvn -Dlabel=centos -Dhadoop.version=1.0.4 clean package
[INFO] Scanning for projects...
[WARNING] 
[WARNING] Some problems were encountered while building the effective model for org.bdgenomics.quinine:quinine-core_2.10:jar:0.0.3-SNAPSHOT
[WARNING] 'dependencies.dependency.exclusions.exclusion.artifactId' for org.apache.hadoop:hadoop-client:jar with value '*' does not match a valid id pattern. @ org.bdgenomics.quinine:quinine-parent_2.10:0.0.3-SNAPSHOT, /home/jenkins/workspace/quinine/hadoop.version/1.0.4/label/centos/pom.xml, line 370, column 25
[WARNING] 'dependencies.dependency.exclusions.exclusion.artifactId' for org.apache.hadoop:hadoop-client:jar with value '*' does not match a valid id pattern. @ org.bdgenomics.quinine:quinine-parent_2.10:0.0.3-SNAPSHOT, /home/jenkins/workspace/quinine/hadoop.version/1.0.4/label/centos/pom.xml, line 374, column 25
[WARNING] 'dependencyManagement.dependencies.dependency.exclusions.exclusion.artifactId' for org.apache.hadoop:hadoop-client:jar with value '*' does not match a valid id pattern. @ org.bdgenomics.quinine:quinine-parent_2.10:0.0.3-SNAPSHOT, /home/jenkins/workspace/quinine/hadoop.version/1.0.4/label/centos/pom.xml, line 370, column 25
[WARNING] 'dependencyManagement.dependencies.dependency.exclusions.exclusion.artifactId' for org.apache.hadoop:hadoop-client:jar with value '*' does not match a valid id pattern. @ org.bdgenomics.quinine:quinine-parent_2.10:0.0.3-SNAPSHOT, /home/jenkins/workspace/quinine/hadoop.version/1.0.4/label/centos/pom.xml, line 374, column 25
[WARNING] 
[WARNING] Some problems were encountered while building the effective model for org.bdgenomics.quinine:quinine-cli_2.10:jar:0.0.3-SNAPSHOT
[WARNING] 'dependencyManagement.dependencies.dependency.exclusions.exclusion.artifactId' for org.apache.hadoop:hadoop-client:jar with value '*' does not match a valid id pattern. @ org.bdgenomics.quinine:quinine-parent_2.10:0.0.3-SNAPSHOT, /home/jenkins/workspace/quinine/hadoop.version/1.0.4/label/centos/pom.xml, line 370, column 25
[WARNING] 'dependencyManagement.dependencies.dependency.exclusions.exclusion.artifactId' for org.apache.hadoop:hadoop-client:jar with value '*' does not match a valid id pattern. @ org.bdgenomics.quinine:quinine-parent_2.10:0.0.3-SNAPSHOT, /home/jenkins/workspace/quinine/hadoop.version/1.0.4/label/centos/pom.xml, line 374, column 25
[WARNING] 
[WARNING] Some problems were encountered while building the effective model for org.bdgenomics.quinine:quinine-parent_2.10:pom:0.0.3-SNAPSHOT
[WARNING] 'dependencyManagement.dependencies.dependency.exclusions.exclusion.artifactId' for org.apache.hadoop:hadoop-client:jar with value '*' does not match a valid id pattern. @ line 370, column 25
[WARNING] 'dependencyManagement.dependencies.dependency.exclusions.exclusion.artifactId' for org.apache.hadoop:hadoop-client:jar with value '*' does not match a valid id pattern. @ line 374, column 25
[WARNING] 
[WARNING] It is highly recommended to fix these problems because they threaten the stability of your build.
[WARNING] 
[WARNING] For this reason, future Maven versions might no longer support building such malformed projects.
[WARNING] 
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Build Order:
[INFO] 
[INFO] quinine
[INFO] quinine: Core
[INFO] quinine: CLI
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building quinine 0.0.3-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:2.6.1:clean (default-clean) @ quinine-parent_2.10 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ quinine-parent_2.10 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ quinine-parent_2.10 ---
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ quinine-parent_2.10 ---
[INFO] Modified 0 of 54 .scala files
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ quinine-parent_2.10 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ quinine-parent_2.10 ---
[INFO] No sources to compile
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building quinine: Core 0.0.3-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:2.6.1:clean (default-clean) @ quinine-core_2.10 ---
[INFO] Deleting /home/jenkins/workspace/quinine/hadoop.version/1.0.4/label/centos/quinine-core/target
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ quinine-core_2.10 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ quinine-core_2.10 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:1.9.1:add-source (add-source) @ quinine-core_2.10 ---
[INFO] Source directory: /home/jenkins/workspace/quinine/hadoop.version/1.0.4/label/centos/quinine-core/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ quinine-core_2.10 ---
[INFO] Modified 0 of 41 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:2.7:resources (default-resources) @ quinine-core_2.10 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/quinine/hadoop.version/1.0.4/label/centos/quinine-core/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ quinine-core_2.10 ---
[WARNING]  Expected all dependencies to require Scala version: 2.10.4
[WARNING]  com.twitter:chill_2.10:0.5.0 requires scala version: 2.10.4
[WARNING]  com.typesafe.akka:akka-remote_2.10:2.3.11 requires scala version: 2.10.4
[WARNING]  com.typesafe.akka:akka-actor_2.10:2.3.11 requires scala version: 2.10.4
[WARNING]  com.typesafe.akka:akka-slf4j_2.10:2.3.11 requires scala version: 2.10.4
[WARNING]  org.apache.spark:spark-core_2.10:1.6.1 requires scala version: 2.10.4
[WARNING]  org.json4s:json4s-jackson_2.10:3.2.10 requires scala version: 2.10.4
[WARNING]  org.json4s:json4s-core_2.10:3.2.10 requires scala version: 2.10.4
[WARNING]  org.json4s:json4s-ast_2.10:3.2.10 requires scala version: 2.10.4
[WARNING]  org.json4s:json4s-core_2.10:3.2.10 requires scala version: 2.10.0
[WARNING] Multiple versions of scala libraries detected!
[INFO] /home/jenkins/workspace/quinine/hadoop.version/1.0.4/label/centos/quinine-core/src/main/scala:-1: info: compiling
[INFO] Compiling 24 source files to /home/jenkins/workspace/quinine/hadoop.version/1.0.4/label/centos/quinine-core/target/scala-2.10.4/classes at 1552580753841
[WARNING] warning: there were 2 feature warning(s); re-run with -feature for details
[WARNING] one warning found
[INFO] prepare-compile in 0 s
[INFO] compile in 14 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.3:compile (default-compile) @ quinine-core_2.10 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- build-helper-maven-plugin:1.9.1:add-test-source (add-test-source) @ quinine-core_2.10 ---
[INFO] Test Source directory: /home/jenkins/workspace/quinine/hadoop.version/1.0.4/label/centos/quinine-core/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:2.7:testResources (default-testResources) @ quinine-core_2.10 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 2 resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ quinine-core_2.10 ---
[WARNING]  Expected all dependencies to require Scala version: 2.10.4
[WARNING]  com.twitter:chill_2.10:0.5.0 requires scala version: 2.10.4
[WARNING]  com.typesafe.akka:akka-remote_2.10:2.3.11 requires scala version: 2.10.4
[WARNING]  com.typesafe.akka:akka-actor_2.10:2.3.11 requires scala version: 2.10.4
[WARNING]  com.typesafe.akka:akka-slf4j_2.10:2.3.11 requires scala version: 2.10.4
[WARNING]  org.apache.spark:spark-core_2.10:1.6.1 requires scala version: 2.10.4
[WARNING]  org.json4s:json4s-jackson_2.10:3.2.10 requires scala version: 2.10.4
[WARNING]  org.json4s:json4s-core_2.10:3.2.10 requires scala version: 2.10.4
[WARNING]  org.json4s:json4s-ast_2.10:3.2.10 requires scala version: 2.10.4
[WARNING]  org.json4s:json4s-core_2.10:3.2.10 requires scala version: 2.10.0
[WARNING] Multiple versions of scala libraries detected!
[INFO] /home/jenkins/workspace/quinine/hadoop.version/1.0.4/label/centos/quinine-core/src/test/scala:-1: info: compiling
[INFO] Compiling 17 source files to /home/jenkins/workspace/quinine/hadoop.version/1.0.4/label/centos/quinine-core/target/scala-2.10.4/test-classes at 1552580768408
[INFO] prepare-compile in 0 s
[INFO] compile in 16 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.3:testCompile (default-testCompile) @ quinine-core_2.10 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-surefire-plugin:2.18.1:test (default-test) @ quinine-core_2.10 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:1.0:test (test) @ quinine-core_2.10 ---
Discovery starting.
Discovery completed in 543 milliseconds.
Run starting. Expected test count is: 74
RNASeqPanelStatsSuite:
19/03/14 09:26:26 INFO spark.SparkContext: Running Spark version 1.6.1
19/03/14 09:26:26 INFO spark.SecurityManager: Changing view acls to: jenkins
19/03/14 09:26:26 INFO spark.SecurityManager: Changing modify acls to: jenkins
19/03/14 09:26:26 INFO spark.SecurityManager: SecurityManager: authentication disabled; ui acls disabled; users with view permissions: Set(jenkins); users with modify permissions: Set(jenkins)
19/03/14 09:26:26 INFO util.Utils: Successfully started service 'sparkDriver' on port 56900.
19/03/14 09:26:27 INFO slf4j.Slf4jLogger: Slf4jLogger started
19/03/14 09:26:27 INFO Remoting: Starting remoting
19/03/14 09:26:27 INFO Remoting: Remoting started; listening on addresses :[akka.tcp://sparkDriverActorSystem@192.168.10.21:56901]
19/03/14 09:26:27 INFO util.Utils: Successfully started service 'sparkDriverActorSystem' on port 56901.
19/03/14 09:26:27 INFO spark.SparkEnv: Registering MapOutputTracker
19/03/14 09:26:27 INFO spark.SparkEnv: Registering BlockManagerMaster
19/03/14 09:26:27 INFO storage.DiskBlockManager: Created local directory at /tmp/blockmgr-13a427b6-0304-4b90-96e4-e7fb63fd814c
19/03/14 09:26:27 INFO storage.MemoryStore: MemoryStore started with capacity 511.1 MB
19/03/14 09:26:27 INFO spark.SparkEnv: Registering OutputCommitCoordinator
19/03/14 09:26:27 INFO executor.Executor: Starting executor ID driver on host localhost
19/03/14 09:26:27 INFO util.Utils: Successfully started service 'org.apache.spark.network.netty.NettyBlockTransferService' on port 39662.
19/03/14 09:26:27 INFO netty.NettyBlockTransferService: Server created on 39662
19/03/14 09:26:27 INFO storage.BlockManagerMaster: Trying to register BlockManager
19/03/14 09:26:27 INFO storage.BlockManagerMasterEndpoint: Registering block manager localhost:39662 with 511.1 MB RAM, BlockManagerId(driver, localhost, 39662)
19/03/14 09:26:27 INFO storage.BlockManagerMaster: Registered BlockManager
19/03/14 09:26:27 INFO spark.SparkContext: Starting job: reduce at RNASeqReadCounts.scala:80
19/03/14 09:26:28 INFO scheduler.DAGScheduler: Got job 0 (reduce at RNASeqReadCounts.scala:80) with 4 output partitions
19/03/14 09:26:28 INFO scheduler.DAGScheduler: Final stage: ResultStage 0 (reduce at RNASeqReadCounts.scala:80)
19/03/14 09:26:28 INFO scheduler.DAGScheduler: Parents of final stage: List()
19/03/14 09:26:28 INFO scheduler.DAGScheduler: Missing parents: List()
19/03/14 09:26:28 INFO scheduler.DAGScheduler: Submitting ResultStage 0 (MapPartitionsRDD[2] at map at RNASeqReadCounts.scala:79), which has no missing parents
19/03/14 09:26:28 INFO storage.MemoryStore: Block broadcast_0 stored as values in memory (estimated size 2.0 KB, free 2.0 KB)
19/03/14 09:26:28 INFO storage.MemoryStore: Block broadcast_0_piece0 stored as bytes in memory (estimated size 1324.0 B, free 3.3 KB)
19/03/14 09:26:28 INFO storage.BlockManagerInfo: Added broadcast_0_piece0 in memory on localhost:39662 (size: 1324.0 B, free: 511.1 MB)
19/03/14 09:26:28 INFO spark.SparkContext: Created broadcast 0 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:28 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ResultStage 0 (MapPartitionsRDD[2] at map at RNASeqReadCounts.scala:79)
19/03/14 09:26:28 INFO scheduler.TaskSchedulerImpl: Adding task set 0.0 with 4 tasks
19/03/14 09:26:28 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 0.0 (TID 0, localhost, partition 0,PROCESS_LOCAL, 2023 bytes)
19/03/14 09:26:28 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 0.0 (TID 1, localhost, partition 1,PROCESS_LOCAL, 2090 bytes)
19/03/14 09:26:28 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 0.0 (TID 2, localhost, partition 2,PROCESS_LOCAL, 2090 bytes)
19/03/14 09:26:28 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 0.0 (TID 3, localhost, partition 3,PROCESS_LOCAL, 2090 bytes)
19/03/14 09:26:28 INFO executor.Executor: Running task 2.0 in stage 0.0 (TID 2)
19/03/14 09:26:28 INFO executor.Executor: Running task 1.0 in stage 0.0 (TID 1)
19/03/14 09:26:28 INFO executor.Executor: Running task 3.0 in stage 0.0 (TID 3)
19/03/14 09:26:28 INFO executor.Executor: Running task 0.0 in stage 0.0 (TID 0)
19/03/14 09:26:28 INFO spark.CacheManager: Partition rdd_0_3 not found, computing it
19/03/14 09:26:28 INFO spark.CacheManager: Partition rdd_0_1 not found, computing it
19/03/14 09:26:28 INFO spark.CacheManager: Partition rdd_0_2 not found, computing it
19/03/14 09:26:28 INFO spark.CacheManager: Partition rdd_0_0 not found, computing it
19/03/14 09:26:28 INFO storage.MemoryStore: Block rdd_0_0 stored as values in memory (estimated size 16.0 B, free 3.4 KB)
19/03/14 09:26:28 INFO storage.BlockManagerInfo: Added rdd_0_0 in memory on localhost:39662 (size: 16.0 B, free: 511.1 MB)
19/03/14 09:26:28 INFO storage.MemoryStore: Block rdd_0_3 stored as values in memory (estimated size 352.0 B, free 3.7 KB)
19/03/14 09:26:28 INFO storage.MemoryStore: Block rdd_0_2 stored as values in memory (estimated size 352.0 B, free 4.0 KB)
19/03/14 09:26:28 INFO storage.MemoryStore: Block rdd_0_1 stored as values in memory (estimated size 352.0 B, free 4.4 KB)
19/03/14 09:26:28 INFO storage.BlockManagerInfo: Added rdd_0_3 in memory on localhost:39662 (size: 352.0 B, free: 511.1 MB)
19/03/14 09:26:28 INFO storage.BlockManagerInfo: Added rdd_0_2 in memory on localhost:39662 (size: 352.0 B, free: 511.1 MB)
19/03/14 09:26:28 INFO storage.BlockManagerInfo: Added rdd_0_1 in memory on localhost:39662 (size: 352.0 B, free: 511.1 MB)
19/03/14 09:26:28 INFO executor.Executor: Finished task 1.0 in stage 0.0 (TID 1). 1548 bytes result sent to driver
19/03/14 09:26:28 INFO executor.Executor: Finished task 0.0 in stage 0.0 (TID 0). 1488 bytes result sent to driver
19/03/14 09:26:28 INFO executor.Executor: Finished task 3.0 in stage 0.0 (TID 3). 1548 bytes result sent to driver
19/03/14 09:26:28 INFO executor.Executor: Finished task 2.0 in stage 0.0 (TID 2). 1548 bytes result sent to driver
19/03/14 09:26:28 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 0.0 (TID 0) in 129 ms on localhost (1/4)
19/03/14 09:26:28 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 0.0 (TID 3) in 94 ms on localhost (2/4)
19/03/14 09:26:28 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 0.0 (TID 1) in 114 ms on localhost (3/4)
19/03/14 09:26:28 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 0.0 (TID 2) in 104 ms on localhost (4/4)
19/03/14 09:26:28 INFO scheduler.DAGScheduler: ResultStage 0 (reduce at RNASeqReadCounts.scala:80) finished in 0.150 s
19/03/14 09:26:28 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 0.0, whose tasks have all completed, from pool 
19/03/14 09:26:28 INFO scheduler.DAGScheduler: Job 0 finished: reduce at RNASeqReadCounts.scala:80, took 0.470275 s
19/03/14 09:26:28 INFO spark.SparkContext: Starting job: collect at RightOuterJoin.scala:77
19/03/14 09:26:28 INFO scheduler.DAGScheduler: Registering RDD 7 (keyBy at RightOuterJoin.scala:75)
19/03/14 09:26:28 INFO scheduler.DAGScheduler: Got job 1 (collect at RightOuterJoin.scala:77) with 4 output partitions
19/03/14 09:26:28 INFO scheduler.DAGScheduler: Final stage: ResultStage 2 (collect at RightOuterJoin.scala:77)
19/03/14 09:26:28 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 1)
19/03/14 09:26:28 INFO scheduler.DAGScheduler: Missing parents: List(ShuffleMapStage 1)
19/03/14 09:26:28 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 1 (MapPartitionsRDD[7] at keyBy at RightOuterJoin.scala:75), which has no missing parents
19/03/14 09:26:28 INFO storage.MemoryStore: Block broadcast_1 stored as values in memory (estimated size 4.0 KB, free 8.4 KB)
19/03/14 09:26:28 INFO storage.MemoryStore: Block broadcast_1_piece0 stored as bytes in memory (estimated size 2.1 KB, free 10.5 KB)
19/03/14 09:26:28 INFO storage.BlockManagerInfo: Added broadcast_1_piece0 in memory on localhost:39662 (size: 2.1 KB, free: 511.1 MB)
19/03/14 09:26:28 INFO spark.SparkContext: Created broadcast 1 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:28 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 1 (MapPartitionsRDD[7] at keyBy at RightOuterJoin.scala:75)
19/03/14 09:26:28 INFO scheduler.TaskSchedulerImpl: Adding task set 1.0 with 4 tasks
19/03/14 09:26:28 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 1.0 (TID 4, localhost, partition 0,PROCESS_LOCAL, 2004 bytes)
19/03/14 09:26:28 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 1.0 (TID 5, localhost, partition 1,PROCESS_LOCAL, 2004 bytes)
19/03/14 09:26:28 INFO storage.BlockManagerInfo: Removed broadcast_0_piece0 on localhost:39662 in memory (size: 1324.0 B, free: 511.1 MB)
19/03/14 09:26:28 INFO spark.ContextCleaner: Cleaned accumulator 1
19/03/14 09:26:28 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 1.0 (TID 6, localhost, partition 2,PROCESS_LOCAL, 2004 bytes)
19/03/14 09:26:28 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 1.0 (TID 7, localhost, partition 3,PROCESS_LOCAL, 2071 bytes)
19/03/14 09:26:28 INFO executor.Executor: Running task 0.0 in stage 1.0 (TID 4)
19/03/14 09:26:28 INFO executor.Executor: Running task 1.0 in stage 1.0 (TID 5)
19/03/14 09:26:28 INFO executor.Executor: Running task 3.0 in stage 1.0 (TID 7)
19/03/14 09:26:28 INFO executor.Executor: Running task 2.0 in stage 1.0 (TID 6)
19/03/14 09:26:28 INFO spark.CacheManager: Partition rdd_1_0 not found, computing it
19/03/14 09:26:28 INFO storage.MemoryStore: Block rdd_1_0 stored as values in memory (estimated size 16.0 B, free 7.2 KB)
19/03/14 09:26:28 INFO storage.BlockManagerInfo: Added rdd_1_0 in memory on localhost:39662 (size: 16.0 B, free: 511.1 MB)
19/03/14 09:26:28 INFO spark.CacheManager: Partition rdd_1_1 not found, computing it
19/03/14 09:26:28 INFO spark.CacheManager: Partition rdd_1_2 not found, computing it
19/03/14 09:26:28 INFO spark.CacheManager: Partition rdd_1_3 not found, computing it
19/03/14 09:26:28 INFO storage.MemoryStore: Block rdd_1_1 stored as values in memory (estimated size 16.0 B, free 7.2 KB)
19/03/14 09:26:28 INFO storage.BlockManagerInfo: Added rdd_1_1 in memory on localhost:39662 (size: 16.0 B, free: 511.1 MB)
19/03/14 09:26:28 INFO storage.MemoryStore: Block rdd_1_2 stored as values in memory (estimated size 16.0 B, free 7.2 KB)
19/03/14 09:26:28 INFO storage.BlockManagerInfo: Added rdd_1_2 in memory on localhost:39662 (size: 16.0 B, free: 511.1 MB)
19/03/14 09:26:28 INFO storage.MemoryStore: Block rdd_1_3 stored as values in memory (estimated size 4.7 KB, free 11.9 KB)
19/03/14 09:26:28 INFO storage.BlockManagerInfo: Added rdd_1_3 in memory on localhost:39662 (size: 4.7 KB, free: 511.1 MB)
19/03/14 09:26:28 INFO executor.Executor: Finished task 1.0 in stage 1.0 (TID 5). 1670 bytes result sent to driver
19/03/14 09:26:28 INFO executor.Executor: Finished task 2.0 in stage 1.0 (TID 6). 1670 bytes result sent to driver
19/03/14 09:26:28 INFO executor.Executor: Finished task 0.0 in stage 1.0 (TID 4). 1670 bytes result sent to driver
19/03/14 09:26:28 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 1.0 (TID 6) in 69 ms on localhost (1/4)
19/03/14 09:26:28 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 1.0 (TID 5) in 79 ms on localhost (2/4)
19/03/14 09:26:28 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 1.0 (TID 4) in 90 ms on localhost (3/4)
19/03/14 09:26:28 INFO executor.Executor: Finished task 3.0 in stage 1.0 (TID 7). 1670 bytes result sent to driver
19/03/14 09:26:28 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 1.0 (TID 7) in 98 ms on localhost (4/4)
19/03/14 09:26:28 INFO scheduler.DAGScheduler: ShuffleMapStage 1 (keyBy at RightOuterJoin.scala:75) finished in 0.127 s
19/03/14 09:26:28 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 1.0, whose tasks have all completed, from pool 
19/03/14 09:26:28 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:28 INFO scheduler.DAGScheduler: running: Set()
19/03/14 09:26:28 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 2)
19/03/14 09:26:28 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:28 INFO scheduler.DAGScheduler: Submitting ResultStage 2 (ShuffledRDD[8] at groupByKey at RightOuterJoin.scala:76), which has no missing parents
19/03/14 09:26:28 INFO storage.MemoryStore: Block broadcast_2 stored as values in memory (estimated size 4.8 KB, free 16.7 KB)
19/03/14 09:26:28 INFO storage.MemoryStore: Block broadcast_2_piece0 stored as bytes in memory (estimated size 2.5 KB, free 19.1 KB)
19/03/14 09:26:28 INFO storage.BlockManagerInfo: Added broadcast_2_piece0 in memory on localhost:39662 (size: 2.5 KB, free: 511.1 MB)
19/03/14 09:26:28 INFO spark.SparkContext: Created broadcast 2 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:28 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ResultStage 2 (ShuffledRDD[8] at groupByKey at RightOuterJoin.scala:76)
19/03/14 09:26:28 INFO scheduler.TaskSchedulerImpl: Adding task set 2.0 with 4 tasks
19/03/14 09:26:28 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 2.0 (TID 8, localhost, partition 0,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:28 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 2.0 (TID 9, localhost, partition 1,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:28 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 2.0 (TID 10, localhost, partition 2,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:28 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 2.0 (TID 11, localhost, partition 3,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:28 INFO executor.Executor: Running task 1.0 in stage 2.0 (TID 9)
19/03/14 09:26:28 INFO executor.Executor: Running task 3.0 in stage 2.0 (TID 11)
19/03/14 09:26:28 INFO executor.Executor: Running task 2.0 in stage 2.0 (TID 10)
19/03/14 09:26:28 INFO executor.Executor: Running task 0.0 in stage 2.0 (TID 8)
19/03/14 09:26:28 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:28 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:28 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:28 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:28 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 4 ms
19/03/14 09:26:28 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 4 ms
19/03/14 09:26:28 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 4 ms
19/03/14 09:26:28 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 4 ms
19/03/14 09:26:28 INFO executor.Executor: Finished task 0.0 in stage 2.0 (TID 8). 1124 bytes result sent to driver
19/03/14 09:26:28 INFO executor.Executor: Finished task 3.0 in stage 2.0 (TID 11). 1124 bytes result sent to driver
19/03/14 09:26:28 INFO executor.Executor: Finished task 2.0 in stage 2.0 (TID 10). 1228 bytes result sent to driver
19/03/14 09:26:28 INFO executor.Executor: Finished task 1.0 in stage 2.0 (TID 9). 1124 bytes result sent to driver
19/03/14 09:26:28 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 2.0 (TID 8) in 80 ms on localhost (1/4)
19/03/14 09:26:28 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 2.0 (TID 11) in 76 ms on localhost (2/4)
19/03/14 09:26:28 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 2.0 (TID 9) in 79 ms on localhost (3/4)
19/03/14 09:26:28 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 2.0 (TID 10) in 80 ms on localhost (4/4)
19/03/14 09:26:28 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 2.0, whose tasks have all completed, from pool 
19/03/14 09:26:28 INFO scheduler.DAGScheduler: ResultStage 2 (collect at RightOuterJoin.scala:77) finished in 0.083 s
19/03/14 09:26:28 INFO scheduler.DAGScheduler: Job 1 finished: collect at RightOuterJoin.scala:77, took 0.294903 s
19/03/14 09:26:28 INFO storage.MemoryStore: Block broadcast_3 stored as values in memory (estimated size 216.0 B, free 19.4 KB)
19/03/14 09:26:28 INFO storage.MemoryStore: Block broadcast_3_piece0 stored as bytes in memory (estimated size 124.0 B, free 19.5 KB)
19/03/14 09:26:28 INFO storage.BlockManagerInfo: Added broadcast_3_piece0 in memory on localhost:39662 (size: 124.0 B, free: 511.1 MB)
19/03/14 09:26:28 INFO spark.SparkContext: Created broadcast 3 from broadcast at RightOuterJoin.scala:86
19/03/14 09:26:28 INFO spark.SparkContext: Starting job: reduce at RNASeqAlignmentCounts.scala:72
19/03/14 09:26:28 INFO scheduler.DAGScheduler: Registering RDD 9 (map at RightOuterJoin.scala:90)
19/03/14 09:26:28 INFO scheduler.DAGScheduler: Registering RDD 10 (flatMap at RightOuterJoin.scala:94)
19/03/14 09:26:28 INFO scheduler.DAGScheduler: Got job 2 (reduce at RNASeqAlignmentCounts.scala:72) with 4 output partitions
19/03/14 09:26:28 INFO scheduler.DAGScheduler: Final stage: ResultStage 5 (reduce at RNASeqAlignmentCounts.scala:72)
19/03/14 09:26:28 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 3, ShuffleMapStage 4)
19/03/14 09:26:28 INFO scheduler.DAGScheduler: Missing parents: List(ShuffleMapStage 3, ShuffleMapStage 4)
19/03/14 09:26:28 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 3 (MapPartitionsRDD[9] at map at RightOuterJoin.scala:90), which has no missing parents
19/03/14 09:26:28 INFO storage.MemoryStore: Block broadcast_4 stored as values in memory (estimated size 3.4 KB, free 22.9 KB)
19/03/14 09:26:28 INFO storage.MemoryStore: Block broadcast_4_piece0 stored as bytes in memory (estimated size 2039.0 B, free 24.8 KB)
19/03/14 09:26:28 INFO storage.BlockManagerInfo: Added broadcast_4_piece0 in memory on localhost:39662 (size: 2039.0 B, free: 511.1 MB)
19/03/14 09:26:28 INFO spark.SparkContext: Created broadcast 4 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:28 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 3 (MapPartitionsRDD[9] at map at RightOuterJoin.scala:90)
19/03/14 09:26:28 INFO scheduler.TaskSchedulerImpl: Adding task set 3.0 with 4 tasks
19/03/14 09:26:28 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 4 (MapPartitionsRDD[10] at flatMap at RightOuterJoin.scala:94), which has no missing parents
19/03/14 09:26:28 INFO storage.MemoryStore: Block broadcast_5 stored as values in memory (estimated size 3.7 KB, free 28.5 KB)
19/03/14 09:26:28 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 3.0 (TID 12, localhost, partition 0,PROCESS_LOCAL, 2004 bytes)
19/03/14 09:26:28 INFO storage.MemoryStore: Block broadcast_5_piece0 stored as bytes in memory (estimated size 2.1 KB, free 30.6 KB)
19/03/14 09:26:28 INFO storage.BlockManagerInfo: Added broadcast_5_piece0 in memory on localhost:39662 (size: 2.1 KB, free: 511.1 MB)
19/03/14 09:26:28 INFO spark.SparkContext: Created broadcast 5 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:28 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 4 (MapPartitionsRDD[10] at flatMap at RightOuterJoin.scala:94)
19/03/14 09:26:28 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 3.0 (TID 13, localhost, partition 1,PROCESS_LOCAL, 2004 bytes)
19/03/14 09:26:28 INFO scheduler.TaskSchedulerImpl: Adding task set 4.0 with 4 tasks
19/03/14 09:26:28 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 3.0 (TID 14, localhost, partition 2,PROCESS_LOCAL, 2004 bytes)
19/03/14 09:26:28 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 3.0 (TID 15, localhost, partition 3,PROCESS_LOCAL, 2071 bytes)
19/03/14 09:26:28 INFO executor.Executor: Running task 0.0 in stage 3.0 (TID 12)
19/03/14 09:26:28 INFO executor.Executor: Running task 3.0 in stage 3.0 (TID 15)
19/03/14 09:26:28 INFO executor.Executor: Running task 1.0 in stage 3.0 (TID 13)
19/03/14 09:26:28 INFO executor.Executor: Running task 2.0 in stage 3.0 (TID 14)
19/03/14 09:26:28 INFO storage.BlockManager: Found block rdd_1_0 locally
19/03/14 09:26:28 INFO storage.BlockManager: Found block rdd_1_3 locally
19/03/14 09:26:28 INFO storage.BlockManager: Found block rdd_1_2 locally
19/03/14 09:26:28 INFO storage.BlockManager: Found block rdd_1_1 locally
19/03/14 09:26:28 INFO executor.Executor: Finished task 2.0 in stage 3.0 (TID 14). 2240 bytes result sent to driver
19/03/14 09:26:28 INFO executor.Executor: Finished task 1.0 in stage 3.0 (TID 13). 2240 bytes result sent to driver
19/03/14 09:26:28 INFO executor.Executor: Finished task 0.0 in stage 3.0 (TID 12). 2240 bytes result sent to driver
19/03/14 09:26:29 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 4.0 (TID 16, localhost, partition 0,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:29 INFO executor.Executor: Running task 0.0 in stage 4.0 (TID 16)
19/03/14 09:26:29 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 4.0 (TID 17, localhost, partition 1,PROCESS_LOCAL, 2079 bytes)
19/03/14 09:26:29 INFO executor.Executor: Running task 1.0 in stage 4.0 (TID 17)
19/03/14 09:26:29 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 3.0 (TID 14) in 69 ms on localhost (1/4)
19/03/14 09:26:29 INFO executor.Executor: Finished task 3.0 in stage 3.0 (TID 15). 2240 bytes result sent to driver
19/03/14 09:26:29 INFO storage.BlockManager: Found block rdd_0_0 locally
19/03/14 09:26:29 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 4.0 (TID 18, localhost, partition 2,PROCESS_LOCAL, 2079 bytes)
19/03/14 09:26:29 INFO executor.Executor: Running task 2.0 in stage 4.0 (TID 18)
19/03/14 09:26:29 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 3.0 (TID 13) in 90 ms on localhost (2/4)
19/03/14 09:26:29 INFO storage.BlockManager: Found block rdd_0_1 locally
19/03/14 09:26:29 INFO executor.Executor: Finished task 0.0 in stage 4.0 (TID 16). 2240 bytes result sent to driver
19/03/14 09:26:29 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 4.0 (TID 19, localhost, partition 3,PROCESS_LOCAL, 2079 bytes)
19/03/14 09:26:29 INFO executor.Executor: Running task 3.0 in stage 4.0 (TID 19)
19/03/14 09:26:29 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 3.0 (TID 12) in 111 ms on localhost (3/4)
19/03/14 09:26:29 INFO storage.BlockManager: Found block rdd_0_2 locally
19/03/14 09:26:29 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 3.0 (TID 15) in 88 ms on localhost (4/4)
19/03/14 09:26:29 INFO scheduler.DAGScheduler: ShuffleMapStage 3 (map at RightOuterJoin.scala:90) finished in 0.119 s
19/03/14 09:26:29 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 3.0, whose tasks have all completed, from pool 
19/03/14 09:26:29 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:29 INFO scheduler.DAGScheduler: running: Set(ShuffleMapStage 4)
19/03/14 09:26:29 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 5)
19/03/14 09:26:29 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:29 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 4.0 (TID 16) in 47 ms on localhost (1/4)
19/03/14 09:26:29 INFO storage.BlockManager: Found block rdd_0_3 locally
19/03/14 09:26:29 INFO executor.Executor: Finished task 1.0 in stage 4.0 (TID 17). 2240 bytes result sent to driver
19/03/14 09:26:29 INFO executor.Executor: Finished task 2.0 in stage 4.0 (TID 18). 2240 bytes result sent to driver
19/03/14 09:26:29 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 4.0 (TID 17) in 66 ms on localhost (2/4)
19/03/14 09:26:29 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 4.0 (TID 18) in 67 ms on localhost (3/4)
19/03/14 09:26:29 INFO executor.Executor: Finished task 3.0 in stage 4.0 (TID 19). 2240 bytes result sent to driver
19/03/14 09:26:29 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 4.0 (TID 19) in 75 ms on localhost (4/4)
19/03/14 09:26:29 INFO scheduler.DAGScheduler: ShuffleMapStage 4 (flatMap at RightOuterJoin.scala:94) finished in 0.138 s
19/03/14 09:26:29 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 4.0, whose tasks have all completed, from pool 
19/03/14 09:26:29 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:29 INFO scheduler.DAGScheduler: running: Set()
19/03/14 09:26:29 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 5)
19/03/14 09:26:29 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:29 INFO scheduler.DAGScheduler: Submitting ResultStage 5 (MapPartitionsRDD[16] at flatMap at RNASeqAlignmentCounts.scala:71), which has no missing parents
19/03/14 09:26:29 INFO storage.MemoryStore: Block broadcast_6 stored as values in memory (estimated size 3.8 KB, free 34.5 KB)
19/03/14 09:26:29 INFO storage.MemoryStore: Block broadcast_6_piece0 stored as bytes in memory (estimated size 2047.0 B, free 36.5 KB)
19/03/14 09:26:29 INFO storage.BlockManagerInfo: Added broadcast_6_piece0 in memory on localhost:39662 (size: 2047.0 B, free: 511.1 MB)
19/03/14 09:26:29 INFO spark.SparkContext: Created broadcast 6 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:29 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ResultStage 5 (MapPartitionsRDD[16] at flatMap at RNASeqAlignmentCounts.scala:71)
19/03/14 09:26:29 INFO scheduler.TaskSchedulerImpl: Adding task set 5.0 with 4 tasks
19/03/14 09:26:29 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 5.0 (TID 20, localhost, partition 0,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:29 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 5.0 (TID 21, localhost, partition 1,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:29 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 5.0 (TID 22, localhost, partition 2,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:29 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 5.0 (TID 23, localhost, partition 3,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:29 INFO executor.Executor: Running task 0.0 in stage 5.0 (TID 20)
19/03/14 09:26:29 INFO executor.Executor: Running task 2.0 in stage 5.0 (TID 22)
19/03/14 09:26:29 INFO executor.Executor: Running task 1.0 in stage 5.0 (TID 21)
19/03/14 09:26:29 INFO executor.Executor: Running task 3.0 in stage 5.0 (TID 23)
19/03/14 09:26:29 INFO spark.CacheManager: Partition rdd_14_0 not found, computing it
19/03/14 09:26:29 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:29 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:29 INFO spark.CacheManager: Partition rdd_14_1 not found, computing it
19/03/14 09:26:29 INFO spark.CacheManager: Partition rdd_14_3 not found, computing it
19/03/14 09:26:29 INFO spark.CacheManager: Partition rdd_14_2 not found, computing it
19/03/14 09:26:29 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:29 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:29 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:29 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 1 ms
19/03/14 09:26:29 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:29 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:29 INFO storage.ShuffleBlockFetcherIterator: Getting 3 non-empty blocks out of 4 blocks
19/03/14 09:26:29 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:29 INFO storage.ShuffleBlockFetcherIterator: Getting 3 non-empty blocks out of 4 blocks
19/03/14 09:26:29 INFO storage.ShuffleBlockFetcherIterator: Getting 3 non-empty blocks out of 4 blocks
19/03/14 09:26:29 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 1 ms
19/03/14 09:26:29 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:29 INFO storage.ShuffleBlockFetcherIterator: Getting 3 non-empty blocks out of 4 blocks
19/03/14 09:26:29 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:29 INFO storage.MemoryStore: Block rdd_14_3 stored as values in memory (estimated size 16.0 B, free 36.5 KB)
19/03/14 09:26:29 INFO storage.MemoryStore: Block rdd_14_2 stored as values in memory (estimated size 16.0 B, free 36.5 KB)
19/03/14 09:26:29 INFO storage.BlockManagerInfo: Added rdd_14_3 in memory on localhost:39662 (size: 16.0 B, free: 511.1 MB)
19/03/14 09:26:29 INFO storage.MemoryStore: Block rdd_14_0 stored as values in memory (estimated size 16.0 B, free 36.5 KB)
19/03/14 09:26:29 INFO storage.BlockManagerInfo: Added rdd_14_2 in memory on localhost:39662 (size: 16.0 B, free: 511.1 MB)
19/03/14 09:26:29 INFO storage.BlockManagerInfo: Added rdd_14_0 in memory on localhost:39662 (size: 16.0 B, free: 511.1 MB)
19/03/14 09:26:29 INFO executor.Executor: Finished task 3.0 in stage 5.0 (TID 23). 1704 bytes result sent to driver
19/03/14 09:26:29 INFO executor.Executor: Finished task 2.0 in stage 5.0 (TID 22). 1704 bytes result sent to driver
19/03/14 09:26:29 INFO executor.Executor: Finished task 0.0 in stage 5.0 (TID 20). 1704 bytes result sent to driver
19/03/14 09:26:29 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 5.0 (TID 23) in 51 ms on localhost (1/4)
19/03/14 09:26:29 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 5.0 (TID 22) in 54 ms on localhost (2/4)
19/03/14 09:26:29 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 5.0 (TID 20) in 59 ms on localhost (3/4)
19/03/14 09:26:29 INFO storage.MemoryStore: Block rdd_14_1 stored as values in memory (estimated size 5.7 KB, free 42.2 KB)
19/03/14 09:26:29 INFO storage.BlockManagerInfo: Added rdd_14_1 in memory on localhost:39662 (size: 5.7 KB, free: 511.1 MB)
19/03/14 09:26:29 INFO executor.Executor: Finished task 1.0 in stage 5.0 (TID 21). 1767 bytes result sent to driver
19/03/14 09:26:29 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 5.0 (TID 21) in 85 ms on localhost (4/4)
19/03/14 09:26:29 INFO scheduler.DAGScheduler: ResultStage 5 (reduce at RNASeqAlignmentCounts.scala:72) finished in 0.088 s
19/03/14 09:26:29 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 5.0, whose tasks have all completed, from pool 
19/03/14 09:26:29 INFO scheduler.DAGScheduler: Job 2 finished: reduce at RNASeqAlignmentCounts.scala:72, took 0.304776 s
19/03/14 09:26:29 INFO spark.SparkContext: Starting job: count at TranscriptCounts.scala:43
19/03/14 09:26:29 INFO scheduler.DAGScheduler: Got job 3 (count at TranscriptCounts.scala:43) with 4 output partitions
19/03/14 09:26:29 INFO scheduler.DAGScheduler: Final stage: ResultStage 6 (count at TranscriptCounts.scala:43)
19/03/14 09:26:29 INFO scheduler.DAGScheduler: Parents of final stage: List()
19/03/14 09:26:29 INFO scheduler.DAGScheduler: Missing parents: List()
19/03/14 09:26:29 INFO scheduler.DAGScheduler: Submitting ResultStage 6 (MapPartitionsRDD[17] at filter at TranscriptCounts.scala:42), which has no missing parents
19/03/14 09:26:29 INFO storage.MemoryStore: Block broadcast_7 stored as values in memory (estimated size 1808.0 B, free 44.0 KB)
19/03/14 09:26:29 INFO storage.MemoryStore: Block broadcast_7_piece0 stored as bytes in memory (estimated size 1186.0 B, free 45.1 KB)
19/03/14 09:26:29 INFO storage.BlockManagerInfo: Added broadcast_7_piece0 in memory on localhost:39662 (size: 1186.0 B, free: 511.1 MB)
19/03/14 09:26:29 INFO spark.SparkContext: Created broadcast 7 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:29 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ResultStage 6 (MapPartitionsRDD[17] at filter at TranscriptCounts.scala:42)
19/03/14 09:26:29 INFO scheduler.TaskSchedulerImpl: Adding task set 6.0 with 4 tasks
19/03/14 09:26:29 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 6.0 (TID 24, localhost, partition 0,PROCESS_LOCAL, 2015 bytes)
19/03/14 09:26:29 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 6.0 (TID 25, localhost, partition 1,PROCESS_LOCAL, 2015 bytes)
19/03/14 09:26:29 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 6.0 (TID 26, localhost, partition 2,PROCESS_LOCAL, 2015 bytes)
19/03/14 09:26:29 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 6.0 (TID 27, localhost, partition 3,PROCESS_LOCAL, 2082 bytes)
19/03/14 09:26:29 INFO executor.Executor: Running task 1.0 in stage 6.0 (TID 25)
19/03/14 09:26:29 INFO executor.Executor: Running task 0.0 in stage 6.0 (TID 24)
19/03/14 09:26:29 INFO executor.Executor: Running task 2.0 in stage 6.0 (TID 26)
19/03/14 09:26:29 INFO executor.Executor: Running task 3.0 in stage 6.0 (TID 27)
19/03/14 09:26:29 INFO storage.BlockManager: Found block rdd_1_2 locally
19/03/14 09:26:29 INFO storage.BlockManager: Found block rdd_1_0 locally
19/03/14 09:26:29 INFO storage.BlockManager: Found block rdd_1_3 locally
19/03/14 09:26:29 INFO storage.BlockManager: Found block rdd_1_1 locally
19/03/14 09:26:29 INFO executor.Executor: Finished task 2.0 in stage 6.0 (TID 26). 2057 bytes result sent to driver
19/03/14 09:26:29 INFO executor.Executor: Finished task 3.0 in stage 6.0 (TID 27). 2057 bytes result sent to driver
19/03/14 09:26:29 INFO executor.Executor: Finished task 0.0 in stage 6.0 (TID 24). 2057 bytes result sent to driver
19/03/14 09:26:29 INFO executor.Executor: Finished task 1.0 in stage 6.0 (TID 25). 2057 bytes result sent to driver
19/03/14 09:26:29 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 6.0 (TID 26) in 34 ms on localhost (1/4)
19/03/14 09:26:29 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 6.0 (TID 24) in 46 ms on localhost (2/4)
19/03/14 09:26:29 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 6.0 (TID 27) in 30 ms on localhost (3/4)
19/03/14 09:26:29 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 6.0 (TID 25) in 50 ms on localhost (4/4)
19/03/14 09:26:29 INFO scheduler.DAGScheduler: ResultStage 6 (count at TranscriptCounts.scala:43) finished in 0.056 s
19/03/14 09:26:29 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 6.0, whose tasks have all completed, from pool 
19/03/14 09:26:29 INFO scheduler.DAGScheduler: Job 3 finished: count at TranscriptCounts.scala:43, took 0.069792 s
19/03/14 09:26:29 INFO spark.SparkContext: Starting job: count at TranscriptCounts.scala:51
19/03/14 09:26:29 INFO spark.MapOutputTrackerMaster: Size of output statuses for shuffle 2 is 162 bytes
19/03/14 09:26:29 INFO spark.MapOutputTrackerMaster: Size of output statuses for shuffle 1 is 158 bytes
19/03/14 09:26:29 INFO scheduler.DAGScheduler: Registering RDD 19 (distinct at TranscriptCounts.scala:50)
19/03/14 09:26:29 INFO scheduler.DAGScheduler: Got job 4 (count at TranscriptCounts.scala:51) with 4 output partitions
19/03/14 09:26:29 INFO scheduler.DAGScheduler: Final stage: ResultStage 10 (count at TranscriptCounts.scala:51)
19/03/14 09:26:29 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 9)
19/03/14 09:26:29 INFO scheduler.DAGScheduler: Missing parents: List(ShuffleMapStage 9)
19/03/14 09:26:29 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 9 (MapPartitionsRDD[19] at distinct at TranscriptCounts.scala:50), which has no missing parents
19/03/14 09:26:29 INFO storage.MemoryStore: Block broadcast_8 stored as values in memory (estimated size 4.0 KB, free 49.1 KB)
19/03/14 09:26:29 INFO storage.MemoryStore: Block broadcast_8_piece0 stored as bytes in memory (estimated size 2.1 KB, free 51.2 KB)
19/03/14 09:26:29 INFO storage.BlockManagerInfo: Added broadcast_8_piece0 in memory on localhost:39662 (size: 2.1 KB, free: 511.1 MB)
19/03/14 09:26:29 INFO spark.SparkContext: Created broadcast 8 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:29 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 9 (MapPartitionsRDD[19] at distinct at TranscriptCounts.scala:50)
19/03/14 09:26:29 INFO scheduler.TaskSchedulerImpl: Adding task set 9.0 with 4 tasks
19/03/14 09:26:29 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 9.0 (TID 28, localhost, partition 0,PROCESS_LOCAL, 1956 bytes)
19/03/14 09:26:29 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 9.0 (TID 29, localhost, partition 1,PROCESS_LOCAL, 1956 bytes)
19/03/14 09:26:29 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 9.0 (TID 30, localhost, partition 2,PROCESS_LOCAL, 1956 bytes)
19/03/14 09:26:29 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 9.0 (TID 31, localhost, partition 3,PROCESS_LOCAL, 1956 bytes)
19/03/14 09:26:29 INFO executor.Executor: Running task 0.0 in stage 9.0 (TID 28)
19/03/14 09:26:29 INFO executor.Executor: Running task 2.0 in stage 9.0 (TID 30)
19/03/14 09:26:29 INFO executor.Executor: Running task 3.0 in stage 9.0 (TID 31)
19/03/14 09:26:29 INFO executor.Executor: Running task 1.0 in stage 9.0 (TID 29)
19/03/14 09:26:29 INFO storage.BlockManager: Found block rdd_14_2 locally
19/03/14 09:26:29 INFO storage.BlockManager: Found block rdd_14_0 locally
19/03/14 09:26:29 INFO storage.BlockManager: Found block rdd_14_1 locally
19/03/14 09:26:29 INFO storage.BlockManager: Found block rdd_14_3 locally
19/03/14 09:26:29 INFO executor.Executor: Finished task 0.0 in stage 9.0 (TID 28). 2240 bytes result sent to driver
19/03/14 09:26:29 INFO executor.Executor: Finished task 3.0 in stage 9.0 (TID 31). 2240 bytes result sent to driver
19/03/14 09:26:29 INFO executor.Executor: Finished task 1.0 in stage 9.0 (TID 29). 2240 bytes result sent to driver
19/03/14 09:26:29 INFO executor.Executor: Finished task 2.0 in stage 9.0 (TID 30). 2240 bytes result sent to driver
19/03/14 09:26:29 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 9.0 (TID 28) in 47 ms on localhost (1/4)
19/03/14 09:26:29 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 9.0 (TID 31) in 46 ms on localhost (2/4)
19/03/14 09:26:29 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 9.0 (TID 29) in 50 ms on localhost (3/4)
19/03/14 09:26:29 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 9.0 (TID 30) in 50 ms on localhost (4/4)
19/03/14 09:26:29 INFO scheduler.DAGScheduler: ShuffleMapStage 9 (distinct at TranscriptCounts.scala:50) finished in 0.052 s
19/03/14 09:26:29 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 9.0, whose tasks have all completed, from pool 
19/03/14 09:26:29 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:29 INFO scheduler.DAGScheduler: running: Set()
19/03/14 09:26:29 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 10)
19/03/14 09:26:29 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:29 INFO scheduler.DAGScheduler: Submitting ResultStage 10 (MapPartitionsRDD[21] at distinct at TranscriptCounts.scala:50), which has no missing parents
19/03/14 09:26:29 INFO storage.MemoryStore: Block broadcast_9 stored as values in memory (estimated size 3.1 KB, free 54.3 KB)
19/03/14 09:26:29 INFO storage.MemoryStore: Block broadcast_9_piece0 stored as bytes in memory (estimated size 1856.0 B, free 56.1 KB)
19/03/14 09:26:29 INFO storage.BlockManagerInfo: Added broadcast_9_piece0 in memory on localhost:39662 (size: 1856.0 B, free: 511.1 MB)
19/03/14 09:26:29 INFO spark.SparkContext: Created broadcast 9 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:29 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ResultStage 10 (MapPartitionsRDD[21] at distinct at TranscriptCounts.scala:50)
19/03/14 09:26:29 INFO scheduler.TaskSchedulerImpl: Adding task set 10.0 with 4 tasks
19/03/14 09:26:29 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 10.0 (TID 32, localhost, partition 1,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:29 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 10.0 (TID 33, localhost, partition 0,PROCESS_LOCAL, 1894 bytes)
19/03/14 09:26:29 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 10.0 (TID 34, localhost, partition 2,PROCESS_LOCAL, 1894 bytes)
19/03/14 09:26:29 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 10.0 (TID 35, localhost, partition 3,PROCESS_LOCAL, 1894 bytes)
19/03/14 09:26:29 INFO executor.Executor: Running task 1.0 in stage 10.0 (TID 32)
19/03/14 09:26:29 INFO executor.Executor: Running task 0.0 in stage 10.0 (TID 33)
19/03/14 09:26:29 INFO executor.Executor: Running task 3.0 in stage 10.0 (TID 35)
19/03/14 09:26:29 INFO executor.Executor: Running task 2.0 in stage 10.0 (TID 34)
19/03/14 09:26:29 INFO storage.ShuffleBlockFetcherIterator: Getting 0 non-empty blocks out of 4 blocks
19/03/14 09:26:29 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 1 ms
19/03/14 09:26:29 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:29 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 1 ms
19/03/14 09:26:29 INFO storage.ShuffleBlockFetcherIterator: Getting 0 non-empty blocks out of 4 blocks
19/03/14 09:26:29 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:29 INFO storage.ShuffleBlockFetcherIterator: Getting 0 non-empty blocks out of 4 blocks
19/03/14 09:26:29 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:29 INFO executor.Executor: Finished task 3.0 in stage 10.0 (TID 35). 1123 bytes result sent to driver
19/03/14 09:26:29 INFO executor.Executor: Finished task 0.0 in stage 10.0 (TID 33). 1123 bytes result sent to driver
19/03/14 09:26:29 INFO executor.Executor: Finished task 2.0 in stage 10.0 (TID 34). 1123 bytes result sent to driver
19/03/14 09:26:29 INFO executor.Executor: Finished task 1.0 in stage 10.0 (TID 32). 1123 bytes result sent to driver
19/03/14 09:26:29 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 10.0 (TID 35) in 20 ms on localhost (1/4)
19/03/14 09:26:29 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 10.0 (TID 33) in 29 ms on localhost (2/4)
19/03/14 09:26:29 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 10.0 (TID 34) in 31 ms on localhost (3/4)
19/03/14 09:26:29 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 10.0 (TID 32) in 33 ms on localhost (4/4)
19/03/14 09:26:29 INFO scheduler.DAGScheduler: ResultStage 10 (count at TranscriptCounts.scala:51) finished in 0.035 s
19/03/14 09:26:29 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 10.0, whose tasks have all completed, from pool 
19/03/14 09:26:29 INFO scheduler.DAGScheduler: Job 4 finished: count at TranscriptCounts.scala:51, took 0.128471 s
19/03/14 09:26:29 INFO rdd.ParallelCollectionRDD: Removing RDD 0 from persistence list
19/03/14 09:26:29 INFO storage.BlockManager: Removing RDD 0
19/03/14 09:26:29 INFO spark.SparkContext: Starting job: collect at BroadcastRegionJoin.scala:100
19/03/14 09:26:29 INFO scheduler.DAGScheduler: Registering RDD 28 (keyBy at BroadcastRegionJoin.scala:98)
19/03/14 09:26:29 INFO scheduler.DAGScheduler: Got job 5 (collect at BroadcastRegionJoin.scala:100) with 4 output partitions
19/03/14 09:26:29 INFO scheduler.DAGScheduler: Final stage: ResultStage 12 (collect at BroadcastRegionJoin.scala:100)
19/03/14 09:26:29 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 11)
19/03/14 09:26:29 INFO scheduler.DAGScheduler: Missing parents: List(ShuffleMapStage 11)
19/03/14 09:26:29 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 11 (MapPartitionsRDD[28] at keyBy at BroadcastRegionJoin.scala:98), which has no missing parents
19/03/14 09:26:29 INFO storage.BlockManagerInfo: Removed broadcast_9_piece0 on localhost:39662 in memory (size: 1856.0 B, free: 511.1 MB)
19/03/14 09:26:29 INFO spark.ContextCleaner: Cleaned accumulator 9
19/03/14 09:26:29 INFO storage.BlockManagerInfo: Removed broadcast_8_piece0 on localhost:39662 in memory (size: 2.1 KB, free: 511.1 MB)
19/03/14 09:26:29 INFO spark.ContextCleaner: Cleaned accumulator 8
19/03/14 09:26:29 INFO storage.MemoryStore: Block broadcast_10 stored as values in memory (estimated size 4.2 KB, free 48.3 KB)
19/03/14 09:26:29 INFO spark.ContextCleaner: Cleaned shuffle 3
19/03/14 09:26:29 INFO storage.MemoryStore: Block broadcast_10_piece0 stored as bytes in memory (estimated size 2.2 KB, free 50.5 KB)
19/03/14 09:26:29 INFO storage.BlockManagerInfo: Added broadcast_10_piece0 in memory on localhost:39662 (size: 2.2 KB, free: 511.1 MB)
19/03/14 09:26:29 INFO storage.BlockManagerInfo: Removed broadcast_7_piece0 on localhost:39662 in memory (size: 1186.0 B, free: 511.1 MB)
19/03/14 09:26:29 INFO spark.SparkContext: Created broadcast 10 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:29 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 11 (MapPartitionsRDD[28] at keyBy at BroadcastRegionJoin.scala:98)
19/03/14 09:26:29 INFO scheduler.TaskSchedulerImpl: Adding task set 11.0 with 4 tasks
19/03/14 09:26:29 INFO spark.ContextCleaner: Cleaned accumulator 7
19/03/14 09:26:29 INFO storage.BlockManagerInfo: Removed broadcast_6_piece0 on localhost:39662 in memory (size: 2047.0 B, free: 511.1 MB)
19/03/14 09:26:29 INFO spark.ContextCleaner: Cleaned accumulator 6
19/03/14 09:26:29 INFO storage.BlockManagerInfo: Removed broadcast_5_piece0 on localhost:39662 in memory (size: 2.1 KB, free: 511.1 MB)
19/03/14 09:26:29 INFO spark.ContextCleaner: Cleaned accumulator 5
19/03/14 09:26:29 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 11.0 (TID 36, localhost, partition 0,PROCESS_LOCAL, 2004 bytes)
19/03/14 09:26:29 INFO storage.BlockManagerInfo: Removed broadcast_4_piece0 on localhost:39662 in memory (size: 2039.0 B, free: 511.1 MB)
19/03/14 09:26:29 INFO spark.ContextCleaner: Cleaned accumulator 4
19/03/14 09:26:29 INFO storage.BlockManagerInfo: Removed broadcast_2_piece0 on localhost:39662 in memory (size: 2.5 KB, free: 511.1 MB)
19/03/14 09:26:29 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 11.0 (TID 37, localhost, partition 1,PROCESS_LOCAL, 2004 bytes)
19/03/14 09:26:29 INFO spark.ContextCleaner: Cleaned accumulator 3
19/03/14 09:26:29 INFO storage.BlockManagerInfo: Removed broadcast_1_piece0 on localhost:39662 in memory (size: 2.1 KB, free: 511.1 MB)
19/03/14 09:26:29 INFO spark.ContextCleaner: Cleaned accumulator 2
19/03/14 09:26:29 INFO spark.ContextCleaner: Cleaned shuffle 0
19/03/14 09:26:29 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 11.0 (TID 38, localhost, partition 2,PROCESS_LOCAL, 2004 bytes)
19/03/14 09:26:29 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 11.0 (TID 39, localhost, partition 3,PROCESS_LOCAL, 2071 bytes)
19/03/14 09:26:29 INFO executor.Executor: Running task 3.0 in stage 11.0 (TID 39)
19/03/14 09:26:29 INFO executor.Executor: Running task 1.0 in stage 11.0 (TID 37)
19/03/14 09:26:29 INFO executor.Executor: Running task 0.0 in stage 11.0 (TID 36)
19/03/14 09:26:29 INFO executor.Executor: Running task 2.0 in stage 11.0 (TID 38)
19/03/14 09:26:29 INFO storage.BlockManager: Found block rdd_1_3 locally
19/03/14 09:26:29 INFO storage.BlockManager: Found block rdd_1_2 locally
19/03/14 09:26:29 INFO storage.BlockManager: Found block rdd_1_1 locally
19/03/14 09:26:29 INFO storage.BlockManager: Found block rdd_1_0 locally
19/03/14 09:26:29 INFO executor.Executor: Finished task 0.0 in stage 11.0 (TID 36). 2240 bytes result sent to driver
19/03/14 09:26:29 INFO executor.Executor: Finished task 2.0 in stage 11.0 (TID 38). 2240 bytes result sent to driver
19/03/14 09:26:29 INFO executor.Executor: Finished task 1.0 in stage 11.0 (TID 37). 2240 bytes result sent to driver
19/03/14 09:26:29 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 11.0 (TID 36) in 32 ms on localhost (1/4)
19/03/14 09:26:29 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 11.0 (TID 38) in 26 ms on localhost (2/4)
19/03/14 09:26:29 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 11.0 (TID 37) in 29 ms on localhost (3/4)
19/03/14 09:26:29 INFO executor.Executor: Finished task 3.0 in stage 11.0 (TID 39). 2240 bytes result sent to driver
19/03/14 09:26:29 INFO scheduler.DAGScheduler: ShuffleMapStage 11 (keyBy at BroadcastRegionJoin.scala:98) finished in 0.047 s
19/03/14 09:26:29 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:29 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 11.0 (TID 39) in 36 ms on localhost (4/4)
19/03/14 09:26:29 INFO scheduler.DAGScheduler: running: Set()
19/03/14 09:26:29 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 12)
19/03/14 09:26:29 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:29 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 11.0, whose tasks have all completed, from pool 
19/03/14 09:26:29 INFO scheduler.DAGScheduler: Submitting ResultStage 12 (ShuffledRDD[29] at groupByKey at BroadcastRegionJoin.scala:99), which has no missing parents
19/03/14 09:26:29 INFO storage.MemoryStore: Block broadcast_11 stored as values in memory (estimated size 5.0 KB, free 22.2 KB)
19/03/14 09:26:29 INFO storage.MemoryStore: Block broadcast_11_piece0 stored as bytes in memory (estimated size 2.5 KB, free 24.7 KB)
19/03/14 09:26:29 INFO storage.BlockManagerInfo: Added broadcast_11_piece0 in memory on localhost:39662 (size: 2.5 KB, free: 511.1 MB)
19/03/14 09:26:29 INFO spark.SparkContext: Created broadcast 11 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:29 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ResultStage 12 (ShuffledRDD[29] at groupByKey at BroadcastRegionJoin.scala:99)
19/03/14 09:26:29 INFO scheduler.TaskSchedulerImpl: Adding task set 12.0 with 4 tasks
19/03/14 09:26:29 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 12.0 (TID 40, localhost, partition 0,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:29 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 12.0 (TID 41, localhost, partition 1,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:29 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 12.0 (TID 42, localhost, partition 2,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:29 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 12.0 (TID 43, localhost, partition 3,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:29 INFO executor.Executor: Running task 0.0 in stage 12.0 (TID 40)
19/03/14 09:26:29 INFO executor.Executor: Running task 1.0 in stage 12.0 (TID 41)
19/03/14 09:26:29 INFO executor.Executor: Running task 3.0 in stage 12.0 (TID 43)
19/03/14 09:26:29 INFO executor.Executor: Running task 2.0 in stage 12.0 (TID 42)
19/03/14 09:26:29 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:29 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:29 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:29 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:29 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:29 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:29 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 1 ms
19/03/14 09:26:29 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 1 ms
19/03/14 09:26:29 INFO executor.Executor: Finished task 3.0 in stage 12.0 (TID 43). 1124 bytes result sent to driver
19/03/14 09:26:29 INFO executor.Executor: Finished task 1.0 in stage 12.0 (TID 41). 1124 bytes result sent to driver
19/03/14 09:26:29 INFO executor.Executor: Finished task 0.0 in stage 12.0 (TID 40). 1124 bytes result sent to driver
19/03/14 09:26:29 INFO executor.Executor: Finished task 2.0 in stage 12.0 (TID 42). 1228 bytes result sent to driver
19/03/14 09:26:29 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 12.0 (TID 43) in 18 ms on localhost (1/4)
19/03/14 09:26:29 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 12.0 (TID 41) in 21 ms on localhost (2/4)
19/03/14 09:26:29 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 12.0 (TID 40) in 25 ms on localhost (3/4)
19/03/14 09:26:29 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 12.0 (TID 42) in 26 ms on localhost (4/4)
19/03/14 09:26:29 INFO scheduler.DAGScheduler: ResultStage 12 (collect at BroadcastRegionJoin.scala:100) finished in 0.031 s
19/03/14 09:26:29 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 12.0, whose tasks have all completed, from pool 
19/03/14 09:26:29 INFO scheduler.DAGScheduler: Job 5 finished: collect at BroadcastRegionJoin.scala:100, took 0.129388 s
19/03/14 09:26:29 INFO storage.MemoryStore: Block broadcast_12 stored as values in memory (estimated size 216.0 B, free 24.9 KB)
19/03/14 09:26:29 INFO storage.MemoryStore: Block broadcast_12_piece0 stored as bytes in memory (estimated size 124.0 B, free 25.0 KB)
19/03/14 09:26:29 INFO storage.BlockManagerInfo: Added broadcast_12_piece0 in memory on localhost:39662 (size: 124.0 B, free: 511.1 MB)
19/03/14 09:26:29 INFO spark.SparkContext: Created broadcast 12 from broadcast at BroadcastRegionJoin.scala:109
19/03/14 09:26:29 INFO spark.SparkContext: Starting job: collect at CoverageStats.scala:174
19/03/14 09:26:29 INFO scheduler.DAGScheduler: Registering RDD 22 (flatMap at ReadCoverage.scala:59)
19/03/14 09:26:29 INFO scheduler.DAGScheduler: Registering RDD 32 (flatMap at BroadcastRegionJoin.scala:118)
19/03/14 09:26:29 INFO scheduler.DAGScheduler: Registering RDD 30 (map at BroadcastRegionJoin.scala:113)
19/03/14 09:26:29 INFO scheduler.DAGScheduler: Registering RDD 39 (map at CoverageStats.scala:172)
19/03/14 09:26:29 INFO scheduler.DAGScheduler: Got job 6 (collect at CoverageStats.scala:174) with 4 output partitions
19/03/14 09:26:29 INFO scheduler.DAGScheduler: Final stage: ResultStage 17 (collect at CoverageStats.scala:174)
19/03/14 09:26:29 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 16)
19/03/14 09:26:29 INFO scheduler.DAGScheduler: Missing parents: List(ShuffleMapStage 16)
19/03/14 09:26:29 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 13 (MapPartitionsRDD[22] at flatMap at ReadCoverage.scala:59), which has no missing parents
19/03/14 09:26:29 INFO storage.MemoryStore: Block broadcast_13 stored as values in memory (estimated size 2.7 KB, free 27.8 KB)
19/03/14 09:26:29 INFO storage.MemoryStore: Block broadcast_13_piece0 stored as bytes in memory (estimated size 1677.0 B, free 29.4 KB)
19/03/14 09:26:29 INFO storage.BlockManagerInfo: Added broadcast_13_piece0 in memory on localhost:39662 (size: 1677.0 B, free: 511.1 MB)
19/03/14 09:26:29 INFO spark.SparkContext: Created broadcast 13 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:29 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 13 (MapPartitionsRDD[22] at flatMap at ReadCoverage.scala:59)
19/03/14 09:26:29 INFO scheduler.TaskSchedulerImpl: Adding task set 13.0 with 4 tasks
19/03/14 09:26:29 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 15 (MapPartitionsRDD[30] at map at BroadcastRegionJoin.scala:113), which has no missing parents
19/03/14 09:26:29 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 13.0 (TID 44, localhost, partition 0,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:29 INFO storage.MemoryStore: Block broadcast_14 stored as values in memory (estimated size 3.6 KB, free 33.0 KB)
19/03/14 09:26:29 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 13.0 (TID 45, localhost, partition 1,PROCESS_LOCAL, 2079 bytes)
19/03/14 09:26:29 INFO storage.MemoryStore: Block broadcast_14_piece0 stored as bytes in memory (estimated size 2.1 KB, free 35.1 KB)
19/03/14 09:26:29 INFO storage.BlockManagerInfo: Added broadcast_14_piece0 in memory on localhost:39662 (size: 2.1 KB, free: 511.1 MB)
19/03/14 09:26:29 INFO spark.SparkContext: Created broadcast 14 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:29 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 15 (MapPartitionsRDD[30] at map at BroadcastRegionJoin.scala:113)
19/03/14 09:26:29 INFO scheduler.TaskSchedulerImpl: Adding task set 15.0 with 4 tasks
19/03/14 09:26:29 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 13.0 (TID 46, localhost, partition 2,PROCESS_LOCAL, 2079 bytes)
19/03/14 09:26:29 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 13.0 (TID 47, localhost, partition 3,PROCESS_LOCAL, 2079 bytes)
19/03/14 09:26:29 INFO executor.Executor: Running task 1.0 in stage 13.0 (TID 45)
19/03/14 09:26:29 INFO executor.Executor: Running task 0.0 in stage 13.0 (TID 44)
19/03/14 09:26:29 INFO executor.Executor: Running task 2.0 in stage 13.0 (TID 46)
19/03/14 09:26:29 INFO executor.Executor: Running task 3.0 in stage 13.0 (TID 47)
19/03/14 09:26:29 INFO executor.Executor: Finished task 0.0 in stage 13.0 (TID 44). 1090 bytes result sent to driver
19/03/14 09:26:29 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 15.0 (TID 48, localhost, partition 0,PROCESS_LOCAL, 2004 bytes)
19/03/14 09:26:29 INFO executor.Executor: Running task 0.0 in stage 15.0 (TID 48)
19/03/14 09:26:29 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 13.0 (TID 44) in 39 ms on localhost (1/4)
19/03/14 09:26:29 INFO storage.BlockManager: Found block rdd_1_0 locally
19/03/14 09:26:29 INFO executor.Executor: Finished task 0.0 in stage 15.0 (TID 48). 2240 bytes result sent to driver
19/03/14 09:26:29 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 15.0 (TID 49, localhost, partition 1,PROCESS_LOCAL, 2004 bytes)
19/03/14 09:26:29 INFO executor.Executor: Running task 1.0 in stage 15.0 (TID 49)
19/03/14 09:26:29 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 15.0 (TID 48) in 19 ms on localhost (1/4)
19/03/14 09:26:29 INFO storage.BlockManager: Found block rdd_1_1 locally
19/03/14 09:26:29 INFO executor.Executor: Finished task 1.0 in stage 15.0 (TID 49). 2240 bytes result sent to driver
19/03/14 09:26:29 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 15.0 (TID 50, localhost, partition 2,PROCESS_LOCAL, 2004 bytes)
19/03/14 09:26:29 INFO executor.Executor: Running task 2.0 in stage 15.0 (TID 50)
19/03/14 09:26:29 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 15.0 (TID 49) in 18 ms on localhost (2/4)
19/03/14 09:26:29 INFO storage.BlockManager: Found block rdd_1_2 locally
19/03/14 09:26:29 INFO executor.Executor: Finished task 2.0 in stage 15.0 (TID 50). 2240 bytes result sent to driver
19/03/14 09:26:29 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 15.0 (TID 51, localhost, partition 3,PROCESS_LOCAL, 2071 bytes)
19/03/14 09:26:29 INFO executor.Executor: Running task 3.0 in stage 15.0 (TID 51)
19/03/14 09:26:29 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 15.0 (TID 50) in 18 ms on localhost (3/4)
19/03/14 09:26:29 INFO storage.BlockManager: Found block rdd_1_3 locally
19/03/14 09:26:29 INFO executor.Executor: Finished task 3.0 in stage 15.0 (TID 51). 2240 bytes result sent to driver
19/03/14 09:26:29 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 15.0 (TID 51) in 26 ms on localhost (4/4)
19/03/14 09:26:29 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 15.0, whose tasks have all completed, from pool 
19/03/14 09:26:29 INFO scheduler.DAGScheduler: ShuffleMapStage 15 (map at BroadcastRegionJoin.scala:113) finished in 0.079 s
19/03/14 09:26:29 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:29 INFO scheduler.DAGScheduler: running: Set(ShuffleMapStage 13)
19/03/14 09:26:29 INFO scheduler.DAGScheduler: waiting: Set(ShuffleMapStage 16, ResultStage 17, ShuffleMapStage 14)
19/03/14 09:26:29 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:29 INFO executor.Executor: Finished task 3.0 in stage 13.0 (TID 47). 1090 bytes result sent to driver
19/03/14 09:26:29 INFO executor.Executor: Finished task 2.0 in stage 13.0 (TID 46). 1090 bytes result sent to driver
19/03/14 09:26:29 INFO executor.Executor: Finished task 1.0 in stage 13.0 (TID 45). 1090 bytes result sent to driver
19/03/14 09:26:29 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 13.0 (TID 47) in 144 ms on localhost (2/4)
19/03/14 09:26:29 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 13.0 (TID 46) in 148 ms on localhost (3/4)
19/03/14 09:26:29 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 13.0 (TID 45) in 152 ms on localhost (4/4)
19/03/14 09:26:29 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 13.0, whose tasks have all completed, from pool 
19/03/14 09:26:29 INFO scheduler.DAGScheduler: ShuffleMapStage 13 (flatMap at ReadCoverage.scala:59) finished in 0.158 s
19/03/14 09:26:29 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:29 INFO scheduler.DAGScheduler: running: Set()
19/03/14 09:26:29 INFO scheduler.DAGScheduler: waiting: Set(ShuffleMapStage 16, ResultStage 17, ShuffleMapStage 14)
19/03/14 09:26:29 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:29 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 14 (MapPartitionsRDD[32] at flatMap at BroadcastRegionJoin.scala:118), which has no missing parents
19/03/14 09:26:29 INFO storage.MemoryStore: Block broadcast_15 stored as values in memory (estimated size 4.3 KB, free 39.4 KB)
19/03/14 09:26:29 INFO storage.MemoryStore: Block broadcast_15_piece0 stored as bytes in memory (estimated size 2.4 KB, free 41.8 KB)
19/03/14 09:26:29 INFO storage.BlockManagerInfo: Added broadcast_15_piece0 in memory on localhost:39662 (size: 2.4 KB, free: 511.1 MB)
19/03/14 09:26:29 INFO spark.SparkContext: Created broadcast 15 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:29 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 14 (MapPartitionsRDD[32] at flatMap at BroadcastRegionJoin.scala:118)
19/03/14 09:26:29 INFO scheduler.TaskSchedulerImpl: Adding task set 14.0 with 4 tasks
19/03/14 09:26:29 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 14.0 (TID 52, localhost, partition 0,NODE_LOCAL, 1883 bytes)
19/03/14 09:26:29 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 14.0 (TID 53, localhost, partition 2,NODE_LOCAL, 1883 bytes)
19/03/14 09:26:29 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 14.0 (TID 54, localhost, partition 1,PROCESS_LOCAL, 1883 bytes)
19/03/14 09:26:29 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 14.0 (TID 55, localhost, partition 3,PROCESS_LOCAL, 1883 bytes)
19/03/14 09:26:29 INFO executor.Executor: Running task 0.0 in stage 14.0 (TID 52)
19/03/14 09:26:29 INFO executor.Executor: Running task 3.0 in stage 14.0 (TID 55)
19/03/14 09:26:29 INFO executor.Executor: Running task 1.0 in stage 14.0 (TID 54)
19/03/14 09:26:29 INFO executor.Executor: Running task 2.0 in stage 14.0 (TID 53)
19/03/14 09:26:29 INFO spark.CacheManager: Partition rdd_23_3 not found, computing it
19/03/14 09:26:29 INFO spark.CacheManager: Partition rdd_23_1 not found, computing it
19/03/14 09:26:29 INFO spark.CacheManager: Partition rdd_23_0 not found, computing it
19/03/14 09:26:29 INFO spark.CacheManager: Partition rdd_23_2 not found, computing it
19/03/14 09:26:29 INFO storage.ShuffleBlockFetcherIterator: Getting 0 non-empty blocks out of 4 blocks
19/03/14 09:26:29 INFO storage.ShuffleBlockFetcherIterator: Getting 0 non-empty blocks out of 4 blocks
19/03/14 09:26:29 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:29 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:29 INFO storage.ShuffleBlockFetcherIterator: Getting 3 non-empty blocks out of 4 blocks
19/03/14 09:26:29 INFO storage.ShuffleBlockFetcherIterator: Getting 3 non-empty blocks out of 4 blocks
19/03/14 09:26:29 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:29 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:29 INFO storage.MemoryStore: Block rdd_23_1 stored as values in memory (estimated size 16.0 B, free 41.8 KB)
19/03/14 09:26:29 INFO storage.MemoryStore: Block rdd_23_3 stored as values in memory (estimated size 16.0 B, free 41.9 KB)
19/03/14 09:26:29 INFO storage.BlockManagerInfo: Added rdd_23_1 in memory on localhost:39662 (size: 16.0 B, free: 511.1 MB)
19/03/14 09:26:29 INFO storage.BlockManagerInfo: Added rdd_23_3 in memory on localhost:39662 (size: 16.0 B, free: 511.1 MB)
19/03/14 09:26:29 INFO executor.Executor: Finished task 1.0 in stage 14.0 (TID 54). 1886 bytes result sent to driver
19/03/14 09:26:29 INFO executor.Executor: Finished task 3.0 in stage 14.0 (TID 55). 1886 bytes result sent to driver
19/03/14 09:26:29 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 14.0 (TID 54) in 21 ms on localhost (1/4)
19/03/14 09:26:29 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 14.0 (TID 55) in 21 ms on localhost (2/4)
19/03/14 09:26:29 INFO storage.MemoryStore: Block rdd_23_2 stored as values in memory (estimated size 17.1 KB, free 59.0 KB)
19/03/14 09:26:29 INFO storage.BlockManagerInfo: Added rdd_23_2 in memory on localhost:39662 (size: 17.1 KB, free: 511.1 MB)
19/03/14 09:26:29 INFO storage.MemoryStore: Block rdd_23_0 stored as values in memory (estimated size 17.1 KB, free 76.1 KB)
19/03/14 09:26:29 INFO storage.BlockManagerInfo: Added rdd_23_0 in memory on localhost:39662 (size: 17.1 KB, free: 511.1 MB)
19/03/14 09:26:30 INFO executor.Executor: Finished task 2.0 in stage 14.0 (TID 53). 1886 bytes result sent to driver
19/03/14 09:26:30 INFO executor.Executor: Finished task 0.0 in stage 14.0 (TID 52). 1886 bytes result sent to driver
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 14.0 (TID 53) in 154 ms on localhost (3/4)
19/03/14 09:26:30 INFO scheduler.DAGScheduler: ShuffleMapStage 14 (flatMap at BroadcastRegionJoin.scala:118) finished in 0.157 s
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 14.0 (TID 52) in 156 ms on localhost (4/4)
19/03/14 09:26:30 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:30 INFO scheduler.DAGScheduler: running: Set()
19/03/14 09:26:30 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 14.0, whose tasks have all completed, from pool 
19/03/14 09:26:30 INFO scheduler.DAGScheduler: waiting: Set(ShuffleMapStage 16, ResultStage 17)
19/03/14 09:26:30 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:30 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 16 (MapPartitionsRDD[39] at map at CoverageStats.scala:172), which has no missing parents
19/03/14 09:26:30 INFO storage.MemoryStore: Block broadcast_16 stored as values in memory (estimated size 4.1 KB, free 80.2 KB)
19/03/14 09:26:30 INFO storage.MemoryStore: Block broadcast_16_piece0 stored as bytes in memory (estimated size 2.2 KB, free 82.3 KB)
19/03/14 09:26:30 INFO storage.BlockManagerInfo: Added broadcast_16_piece0 in memory on localhost:39662 (size: 2.2 KB, free: 511.1 MB)
19/03/14 09:26:30 INFO spark.SparkContext: Created broadcast 16 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:30 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 16 (MapPartitionsRDD[39] at map at CoverageStats.scala:172)
19/03/14 09:26:30 INFO scheduler.TaskSchedulerImpl: Adding task set 16.0 with 4 tasks
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 16.0 (TID 56, localhost, partition 0,PROCESS_LOCAL, 1956 bytes)
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 16.0 (TID 57, localhost, partition 1,PROCESS_LOCAL, 1956 bytes)
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 16.0 (TID 58, localhost, partition 2,PROCESS_LOCAL, 1956 bytes)
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 16.0 (TID 59, localhost, partition 3,PROCESS_LOCAL, 1956 bytes)
19/03/14 09:26:30 INFO executor.Executor: Running task 0.0 in stage 16.0 (TID 56)
19/03/14 09:26:30 INFO executor.Executor: Running task 1.0 in stage 16.0 (TID 57)
19/03/14 09:26:30 INFO executor.Executor: Running task 3.0 in stage 16.0 (TID 59)
19/03/14 09:26:30 INFO executor.Executor: Running task 2.0 in stage 16.0 (TID 58)
19/03/14 09:26:30 INFO spark.CacheManager: Partition rdd_37_0 not found, computing it
19/03/14 09:26:30 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:30 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:30 INFO spark.CacheManager: Partition rdd_37_1 not found, computing it
19/03/14 09:26:30 INFO storage.ShuffleBlockFetcherIterator: Getting 2 non-empty blocks out of 4 blocks
19/03/14 09:26:30 INFO spark.CacheManager: Partition rdd_37_3 not found, computing it
19/03/14 09:26:30 INFO spark.CacheManager: Partition rdd_37_2 not found, computing it
19/03/14 09:26:30 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:30 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:30 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:30 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:30 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:30 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:30 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:30 INFO storage.ShuffleBlockFetcherIterator: Getting 2 non-empty blocks out of 4 blocks
19/03/14 09:26:30 INFO storage.ShuffleBlockFetcherIterator: Getting 2 non-empty blocks out of 4 blocks
19/03/14 09:26:30 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:30 INFO storage.ShuffleBlockFetcherIterator: Getting 2 non-empty blocks out of 4 blocks
19/03/14 09:26:30 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:30 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:30 INFO storage.MemoryStore: Block rdd_37_0 stored as values in memory (estimated size 16.0 B, free 82.4 KB)
19/03/14 09:26:30 INFO storage.BlockManagerInfo: Added rdd_37_0 in memory on localhost:39662 (size: 16.0 B, free: 511.1 MB)
19/03/14 09:26:30 INFO storage.MemoryStore: Block rdd_37_3 stored as values in memory (estimated size 16.0 B, free 82.4 KB)
19/03/14 09:26:30 INFO storage.MemoryStore: Block rdd_37_2 stored as values in memory (estimated size 16.0 B, free 82.4 KB)
19/03/14 09:26:30 INFO storage.BlockManagerInfo: Added rdd_37_3 in memory on localhost:39662 (size: 16.0 B, free: 511.1 MB)
19/03/14 09:26:30 INFO storage.BlockManagerInfo: Added rdd_37_2 in memory on localhost:39662 (size: 16.0 B, free: 511.1 MB)
19/03/14 09:26:30 INFO executor.Executor: Finished task 0.0 in stage 16.0 (TID 56). 1886 bytes result sent to driver
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 16.0 (TID 56) in 23 ms on localhost (1/4)
19/03/14 09:26:30 INFO executor.Executor: Finished task 3.0 in stage 16.0 (TID 59). 1886 bytes result sent to driver
19/03/14 09:26:30 INFO executor.Executor: Finished task 2.0 in stage 16.0 (TID 58). 1886 bytes result sent to driver
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 16.0 (TID 59) in 25 ms on localhost (2/4)
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 16.0 (TID 58) in 25 ms on localhost (3/4)
19/03/14 09:26:30 INFO storage.MemoryStore: Block rdd_37_1 stored as values in memory (estimated size 45.8 KB, free 128.2 KB)
19/03/14 09:26:30 INFO storage.BlockManagerInfo: Added rdd_37_1 in memory on localhost:39662 (size: 45.8 KB, free: 511.0 MB)
19/03/14 09:26:30 INFO executor.Executor: Finished task 1.0 in stage 16.0 (TID 57). 1886 bytes result sent to driver
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 16.0 (TID 57) in 96 ms on localhost (4/4)
19/03/14 09:26:30 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 16.0, whose tasks have all completed, from pool 
19/03/14 09:26:30 INFO scheduler.DAGScheduler: ShuffleMapStage 16 (map at CoverageStats.scala:172) finished in 0.097 s
19/03/14 09:26:30 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:30 INFO scheduler.DAGScheduler: running: Set()
19/03/14 09:26:30 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 17)
19/03/14 09:26:30 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:30 INFO scheduler.DAGScheduler: Submitting ResultStage 17 (ShuffledRDD[40] at reduceByKey at CoverageStats.scala:173), which has no missing parents
19/03/14 09:26:30 INFO storage.MemoryStore: Block broadcast_17 stored as values in memory (estimated size 2.5 KB, free 130.8 KB)
19/03/14 09:26:30 INFO storage.MemoryStore: Block broadcast_17_piece0 stored as bytes in memory (estimated size 1554.0 B, free 132.3 KB)
19/03/14 09:26:30 INFO storage.BlockManagerInfo: Added broadcast_17_piece0 in memory on localhost:39662 (size: 1554.0 B, free: 511.0 MB)
19/03/14 09:26:30 INFO spark.SparkContext: Created broadcast 17 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:30 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ResultStage 17 (ShuffledRDD[40] at reduceByKey at CoverageStats.scala:173)
19/03/14 09:26:30 INFO scheduler.TaskSchedulerImpl: Adding task set 17.0 with 4 tasks
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 17.0 (TID 60, localhost, partition 1,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 17.0 (TID 61, localhost, partition 0,PROCESS_LOCAL, 1894 bytes)
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 17.0 (TID 62, localhost, partition 2,PROCESS_LOCAL, 1894 bytes)
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 17.0 (TID 63, localhost, partition 3,PROCESS_LOCAL, 1894 bytes)
19/03/14 09:26:30 INFO executor.Executor: Running task 1.0 in stage 17.0 (TID 60)
19/03/14 09:26:30 INFO executor.Executor: Running task 3.0 in stage 17.0 (TID 63)
19/03/14 09:26:30 INFO executor.Executor: Running task 2.0 in stage 17.0 (TID 62)
19/03/14 09:26:30 INFO executor.Executor: Running task 0.0 in stage 17.0 (TID 61)
19/03/14 09:26:30 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:30 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:30 INFO storage.ShuffleBlockFetcherIterator: Getting 0 non-empty blocks out of 4 blocks
19/03/14 09:26:30 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:30 INFO storage.ShuffleBlockFetcherIterator: Getting 0 non-empty blocks out of 4 blocks
19/03/14 09:26:30 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:30 INFO storage.ShuffleBlockFetcherIterator: Getting 0 non-empty blocks out of 4 blocks
19/03/14 09:26:30 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:30 INFO executor.Executor: Finished task 0.0 in stage 17.0 (TID 61). 1124 bytes result sent to driver
19/03/14 09:26:30 INFO executor.Executor: Finished task 2.0 in stage 17.0 (TID 62). 1124 bytes result sent to driver
19/03/14 09:26:30 INFO executor.Executor: Finished task 1.0 in stage 17.0 (TID 60). 1131 bytes result sent to driver
19/03/14 09:26:30 INFO executor.Executor: Finished task 3.0 in stage 17.0 (TID 63). 1124 bytes result sent to driver
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 17.0 (TID 61) in 22 ms on localhost (1/4)
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 17.0 (TID 62) in 21 ms on localhost (2/4)
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 17.0 (TID 60) in 24 ms on localhost (3/4)
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 17.0 (TID 63) in 21 ms on localhost (4/4)
19/03/14 09:26:30 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 17.0, whose tasks have all completed, from pool 
19/03/14 09:26:30 INFO scheduler.DAGScheduler: ResultStage 17 (collect at CoverageStats.scala:174) finished in 0.026 s
19/03/14 09:26:30 INFO scheduler.DAGScheduler: Job 6 finished: collect at CoverageStats.scala:174, took 0.489815 s
19/03/14 09:26:30 INFO spark.SparkContext: Starting job: collect at CoverageStats.scala:174
19/03/14 09:26:30 INFO spark.MapOutputTrackerMaster: Size of output statuses for shuffle 8 is 158 bytes
19/03/14 09:26:30 INFO spark.MapOutputTrackerMaster: Size of output statuses for shuffle 6 is 161 bytes
19/03/14 09:26:30 INFO spark.MapOutputTrackerMaster: Size of output statuses for shuffle 5 is 158 bytes
19/03/14 09:26:30 INFO scheduler.DAGScheduler: Registering RDD 42 (map at CoverageStats.scala:172)
19/03/14 09:26:30 INFO scheduler.DAGScheduler: Got job 7 (collect at CoverageStats.scala:174) with 4 output partitions
19/03/14 09:26:30 INFO scheduler.DAGScheduler: Final stage: ResultStage 22 (collect at CoverageStats.scala:174)
19/03/14 09:26:30 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 21)
19/03/14 09:26:30 INFO scheduler.DAGScheduler: Missing parents: List(ShuffleMapStage 21)
19/03/14 09:26:30 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 21 (MapPartitionsRDD[42] at map at CoverageStats.scala:172), which has no missing parents
19/03/14 09:26:30 INFO storage.MemoryStore: Block broadcast_18 stored as values in memory (estimated size 4.2 KB, free 136.5 KB)
19/03/14 09:26:30 INFO storage.MemoryStore: Block broadcast_18_piece0 stored as bytes in memory (estimated size 2.2 KB, free 138.7 KB)
19/03/14 09:26:30 INFO storage.BlockManagerInfo: Added broadcast_18_piece0 in memory on localhost:39662 (size: 2.2 KB, free: 511.0 MB)
19/03/14 09:26:30 INFO spark.SparkContext: Created broadcast 18 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:30 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 21 (MapPartitionsRDD[42] at map at CoverageStats.scala:172)
19/03/14 09:26:30 INFO scheduler.TaskSchedulerImpl: Adding task set 21.0 with 4 tasks
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 21.0 (TID 64, localhost, partition 0,PROCESS_LOCAL, 1956 bytes)
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 21.0 (TID 65, localhost, partition 1,PROCESS_LOCAL, 1956 bytes)
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 21.0 (TID 66, localhost, partition 2,PROCESS_LOCAL, 1956 bytes)
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 21.0 (TID 67, localhost, partition 3,PROCESS_LOCAL, 1956 bytes)
19/03/14 09:26:30 INFO executor.Executor: Running task 0.0 in stage 21.0 (TID 64)
19/03/14 09:26:30 INFO executor.Executor: Running task 2.0 in stage 21.0 (TID 66)
19/03/14 09:26:30 INFO executor.Executor: Running task 1.0 in stage 21.0 (TID 65)
19/03/14 09:26:30 INFO executor.Executor: Running task 3.0 in stage 21.0 (TID 67)
19/03/14 09:26:30 INFO storage.BlockManager: Found block rdd_37_2 locally
19/03/14 09:26:30 INFO storage.BlockManager: Found block rdd_37_1 locally
19/03/14 09:26:30 INFO storage.BlockManager: Found block rdd_37_3 locally
19/03/14 09:26:30 INFO storage.BlockManager: Found block rdd_37_0 locally
19/03/14 09:26:30 INFO executor.Executor: Finished task 2.0 in stage 21.0 (TID 66). 2240 bytes result sent to driver
19/03/14 09:26:30 INFO executor.Executor: Finished task 3.0 in stage 21.0 (TID 67). 2240 bytes result sent to driver
19/03/14 09:26:30 INFO executor.Executor: Finished task 0.0 in stage 21.0 (TID 64). 2240 bytes result sent to driver
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 21.0 (TID 66) in 18 ms on localhost (1/4)
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 21.0 (TID 67) in 18 ms on localhost (2/4)
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 21.0 (TID 64) in 22 ms on localhost (3/4)
19/03/14 09:26:30 INFO executor.Executor: Finished task 1.0 in stage 21.0 (TID 65). 2240 bytes result sent to driver
19/03/14 09:26:30 INFO scheduler.DAGScheduler: ShuffleMapStage 21 (map at CoverageStats.scala:172) finished in 0.034 s
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 21.0 (TID 65) in 32 ms on localhost (4/4)
19/03/14 09:26:30 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:30 INFO scheduler.DAGScheduler: running: Set()
19/03/14 09:26:30 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 22)
19/03/14 09:26:30 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 21.0, whose tasks have all completed, from pool 
19/03/14 09:26:30 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:30 INFO scheduler.DAGScheduler: Submitting ResultStage 22 (ShuffledRDD[43] at reduceByKey at CoverageStats.scala:173), which has no missing parents
19/03/14 09:26:30 INFO storage.MemoryStore: Block broadcast_19 stored as values in memory (estimated size 2.5 KB, free 141.2 KB)
19/03/14 09:26:30 INFO storage.MemoryStore: Block broadcast_19_piece0 stored as bytes in memory (estimated size 1554.0 B, free 142.7 KB)
19/03/14 09:26:30 INFO storage.BlockManagerInfo: Added broadcast_19_piece0 in memory on localhost:39662 (size: 1554.0 B, free: 511.0 MB)
19/03/14 09:26:30 INFO spark.SparkContext: Created broadcast 19 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:30 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ResultStage 22 (ShuffledRDD[43] at reduceByKey at CoverageStats.scala:173)
19/03/14 09:26:30 INFO scheduler.TaskSchedulerImpl: Adding task set 22.0 with 4 tasks
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 22.0 (TID 68, localhost, partition 1,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 22.0 (TID 69, localhost, partition 0,PROCESS_LOCAL, 1894 bytes)
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 22.0 (TID 70, localhost, partition 2,PROCESS_LOCAL, 1894 bytes)
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 22.0 (TID 71, localhost, partition 3,PROCESS_LOCAL, 1894 bytes)
19/03/14 09:26:30 INFO executor.Executor: Running task 0.0 in stage 22.0 (TID 69)
19/03/14 09:26:30 INFO executor.Executor: Running task 2.0 in stage 22.0 (TID 70)
19/03/14 09:26:30 INFO executor.Executor: Running task 3.0 in stage 22.0 (TID 71)
19/03/14 09:26:30 INFO executor.Executor: Running task 1.0 in stage 22.0 (TID 68)
19/03/14 09:26:30 INFO storage.ShuffleBlockFetcherIterator: Getting 0 non-empty blocks out of 4 blocks
19/03/14 09:26:30 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:30 INFO storage.ShuffleBlockFetcherIterator: Getting 0 non-empty blocks out of 4 blocks
19/03/14 09:26:30 INFO storage.ShuffleBlockFetcherIterator: Getting 0 non-empty blocks out of 4 blocks
19/03/14 09:26:30 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 1 ms
19/03/14 09:26:30 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 1 ms
19/03/14 09:26:30 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:30 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:30 INFO executor.Executor: Finished task 2.0 in stage 22.0 (TID 70). 1124 bytes result sent to driver
19/03/14 09:26:30 INFO executor.Executor: Finished task 3.0 in stage 22.0 (TID 71). 1124 bytes result sent to driver
19/03/14 09:26:30 INFO executor.Executor: Finished task 0.0 in stage 22.0 (TID 69). 1124 bytes result sent to driver
19/03/14 09:26:30 INFO executor.Executor: Finished task 1.0 in stage 22.0 (TID 68). 1131 bytes result sent to driver
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 22.0 (TID 70) in 19 ms on localhost (1/4)
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 22.0 (TID 71) in 19 ms on localhost (2/4)
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 22.0 (TID 69) in 22 ms on localhost (3/4)
19/03/14 09:26:30 INFO scheduler.DAGScheduler: ResultStage 22 (collect at CoverageStats.scala:174) finished in 0.026 s
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 22.0 (TID 68) in 25 ms on localhost (4/4)
19/03/14 09:26:30 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 22.0, whose tasks have all completed, from pool 
19/03/14 09:26:30 INFO scheduler.DAGScheduler: Job 7 finished: collect at CoverageStats.scala:174, took 0.084373 s
19/03/14 09:26:30 INFO spark.MapOutputTrackerMasterEndpoint: MapOutputTrackerMasterEndpoint stopped!
19/03/14 09:26:30 INFO storage.MemoryStore: MemoryStore cleared
19/03/14 09:26:30 INFO storage.BlockManager: BlockManager stopped
19/03/14 09:26:30 INFO storage.BlockManagerMaster: BlockManagerMaster stopped
19/03/14 09:26:30 INFO scheduler.OutputCommitCoordinator$OutputCommitCoordinatorEndpoint: OutputCommitCoordinator stopped!
19/03/14 09:26:30 INFO spark.SparkContext: Successfully stopped SparkContext
19/03/14 09:26:30 INFO remote.RemoteActorRefProvider$RemotingTerminator: Shutting down remote daemon.
19/03/14 09:26:30 INFO spark.SparkContext: Running Spark version 1.6.1
- single transcript, with reads at the start, middle, and end
19/03/14 09:26:30 INFO spark.SecurityManager: Changing view acls to: jenkins
19/03/14 09:26:30 INFO spark.SecurityManager: Changing modify acls to: jenkins
19/03/14 09:26:30 INFO spark.SecurityManager: SecurityManager: authentication disabled; ui acls disabled; users with view permissions: Set(jenkins); users with modify permissions: Set(jenkins)
19/03/14 09:26:30 INFO remote.RemoteActorRefProvider$RemotingTerminator: Remote daemon shut down; proceeding with flushing remote transports.
19/03/14 09:26:30 INFO util.Utils: Successfully started service 'sparkDriver' on port 56377.
19/03/14 09:26:30 INFO remote.RemoteActorRefProvider$RemotingTerminator: Remoting shut down.
19/03/14 09:26:30 INFO slf4j.Slf4jLogger: Slf4jLogger started
19/03/14 09:26:30 INFO Remoting: Starting remoting
19/03/14 09:26:30 INFO Remoting: Remoting started; listening on addresses :[akka.tcp://sparkDriverActorSystem@localhost:56378]
19/03/14 09:26:30 INFO util.Utils: Successfully started service 'sparkDriverActorSystem' on port 56378.
19/03/14 09:26:30 INFO spark.SparkEnv: Registering MapOutputTracker
19/03/14 09:26:30 INFO spark.SparkEnv: Registering BlockManagerMaster
19/03/14 09:26:30 INFO storage.DiskBlockManager: Created local directory at /tmp/blockmgr-290fe491-521c-4fe6-b118-26cf66322062
19/03/14 09:26:30 INFO storage.MemoryStore: MemoryStore started with capacity 511.1 MB
19/03/14 09:26:30 INFO spark.SparkEnv: Registering OutputCommitCoordinator
19/03/14 09:26:30 INFO executor.Executor: Starting executor ID driver on host localhost
19/03/14 09:26:30 INFO util.Utils: Successfully started service 'org.apache.spark.network.netty.NettyBlockTransferService' on port 43161.
19/03/14 09:26:30 INFO netty.NettyBlockTransferService: Server created on 43161
19/03/14 09:26:30 INFO storage.BlockManagerMaster: Trying to register BlockManager
19/03/14 09:26:30 INFO storage.BlockManagerMasterEndpoint: Registering block manager localhost:43161 with 511.1 MB RAM, BlockManagerId(driver, localhost, 43161)
19/03/14 09:26:30 INFO storage.BlockManagerMaster: Registered BlockManager
19/03/14 09:26:30 INFO spark.SparkContext: Starting job: reduce at RNASeqReadCounts.scala:80
19/03/14 09:26:30 INFO scheduler.DAGScheduler: Got job 0 (reduce at RNASeqReadCounts.scala:80) with 4 output partitions
19/03/14 09:26:30 INFO scheduler.DAGScheduler: Final stage: ResultStage 0 (reduce at RNASeqReadCounts.scala:80)
19/03/14 09:26:30 INFO scheduler.DAGScheduler: Parents of final stage: List()
19/03/14 09:26:30 INFO scheduler.DAGScheduler: Missing parents: List()
19/03/14 09:26:30 INFO scheduler.DAGScheduler: Submitting ResultStage 0 (MapPartitionsRDD[2] at map at RNASeqReadCounts.scala:79), which has no missing parents
19/03/14 09:26:30 INFO storage.MemoryStore: Block broadcast_0 stored as values in memory (estimated size 2.0 KB, free 2.0 KB)
19/03/14 09:26:30 INFO storage.MemoryStore: Block broadcast_0_piece0 stored as bytes in memory (estimated size 1324.0 B, free 3.3 KB)
19/03/14 09:26:30 INFO storage.BlockManagerInfo: Added broadcast_0_piece0 in memory on localhost:43161 (size: 1324.0 B, free: 511.1 MB)
19/03/14 09:26:30 INFO spark.SparkContext: Created broadcast 0 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:30 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ResultStage 0 (MapPartitionsRDD[2] at map at RNASeqReadCounts.scala:79)
19/03/14 09:26:30 INFO scheduler.TaskSchedulerImpl: Adding task set 0.0 with 4 tasks
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 0.0 (TID 0, localhost, partition 0,PROCESS_LOCAL, 2090 bytes)
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 0.0 (TID 1, localhost, partition 1,PROCESS_LOCAL, 2090 bytes)
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 0.0 (TID 2, localhost, partition 2,PROCESS_LOCAL, 2090 bytes)
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 0.0 (TID 3, localhost, partition 3,PROCESS_LOCAL, 2157 bytes)
19/03/14 09:26:30 INFO executor.Executor: Running task 0.0 in stage 0.0 (TID 0)
19/03/14 09:26:30 INFO executor.Executor: Running task 1.0 in stage 0.0 (TID 1)
19/03/14 09:26:30 INFO executor.Executor: Running task 3.0 in stage 0.0 (TID 3)
19/03/14 09:26:30 INFO executor.Executor: Running task 2.0 in stage 0.0 (TID 2)
19/03/14 09:26:30 INFO spark.CacheManager: Partition rdd_0_2 not found, computing it
19/03/14 09:26:30 INFO storage.MemoryStore: Block rdd_0_2 stored as values in memory (estimated size 352.0 B, free 3.7 KB)
19/03/14 09:26:30 INFO storage.BlockManagerInfo: Added rdd_0_2 in memory on localhost:43161 (size: 352.0 B, free: 511.1 MB)
19/03/14 09:26:30 INFO spark.CacheManager: Partition rdd_0_3 not found, computing it
19/03/14 09:26:30 INFO storage.MemoryStore: Block rdd_0_3 stored as values in memory (estimated size 632.0 B, free 4.3 KB)
19/03/14 09:26:30 INFO storage.BlockManagerInfo: Added rdd_0_3 in memory on localhost:43161 (size: 632.0 B, free: 511.1 MB)
19/03/14 09:26:30 INFO spark.CacheManager: Partition rdd_0_1 not found, computing it
19/03/14 09:26:30 INFO spark.CacheManager: Partition rdd_0_0 not found, computing it
19/03/14 09:26:30 INFO storage.MemoryStore: Block rdd_0_1 stored as values in memory (estimated size 352.0 B, free 4.6 KB)
19/03/14 09:26:30 INFO executor.Executor: Finished task 2.0 in stage 0.0 (TID 2). 1548 bytes result sent to driver
19/03/14 09:26:30 INFO storage.BlockManagerInfo: Added rdd_0_1 in memory on localhost:43161 (size: 352.0 B, free: 511.1 MB)
19/03/14 09:26:30 INFO storage.MemoryStore: Block rdd_0_0 stored as values in memory (estimated size 352.0 B, free 5.0 KB)
19/03/14 09:26:30 INFO storage.BlockManagerInfo: Added rdd_0_0 in memory on localhost:43161 (size: 352.0 B, free: 511.1 MB)
19/03/14 09:26:30 INFO executor.Executor: Finished task 3.0 in stage 0.0 (TID 3). 1548 bytes result sent to driver
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 0.0 (TID 2) in 20 ms on localhost (1/4)
19/03/14 09:26:30 INFO executor.Executor: Finished task 1.0 in stage 0.0 (TID 1). 1548 bytes result sent to driver
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 0.0 (TID 3) in 19 ms on localhost (2/4)
19/03/14 09:26:30 INFO executor.Executor: Finished task 0.0 in stage 0.0 (TID 0). 1548 bytes result sent to driver
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 0.0 (TID 1) in 30 ms on localhost (3/4)
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 0.0 (TID 0) in 36 ms on localhost (4/4)
19/03/14 09:26:30 INFO scheduler.DAGScheduler: ResultStage 0 (reduce at RNASeqReadCounts.scala:80) finished in 0.037 s
19/03/14 09:26:30 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 0.0, whose tasks have all completed, from pool 
19/03/14 09:26:30 INFO scheduler.DAGScheduler: Job 0 finished: reduce at RNASeqReadCounts.scala:80, took 0.080375 s
19/03/14 09:26:30 INFO spark.SparkContext: Starting job: collect at RightOuterJoin.scala:77
19/03/14 09:26:30 INFO scheduler.DAGScheduler: Registering RDD 7 (keyBy at RightOuterJoin.scala:75)
19/03/14 09:26:30 INFO scheduler.DAGScheduler: Got job 1 (collect at RightOuterJoin.scala:77) with 4 output partitions
19/03/14 09:26:30 INFO scheduler.DAGScheduler: Final stage: ResultStage 2 (collect at RightOuterJoin.scala:77)
19/03/14 09:26:30 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 1)
19/03/14 09:26:30 INFO scheduler.DAGScheduler: Missing parents: List(ShuffleMapStage 1)
19/03/14 09:26:30 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 1 (MapPartitionsRDD[7] at keyBy at RightOuterJoin.scala:75), which has no missing parents
19/03/14 09:26:30 INFO storage.MemoryStore: Block broadcast_1 stored as values in memory (estimated size 4.0 KB, free 9.0 KB)
19/03/14 09:26:30 INFO storage.MemoryStore: Block broadcast_1_piece0 stored as bytes in memory (estimated size 2.1 KB, free 11.1 KB)
19/03/14 09:26:30 INFO storage.BlockManagerInfo: Added broadcast_1_piece0 in memory on localhost:43161 (size: 2.1 KB, free: 511.1 MB)
19/03/14 09:26:30 INFO spark.SparkContext: Created broadcast 1 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:30 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 1 (MapPartitionsRDD[7] at keyBy at RightOuterJoin.scala:75)
19/03/14 09:26:30 INFO scheduler.TaskSchedulerImpl: Adding task set 1.0 with 4 tasks
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 1.0 (TID 4, localhost, partition 0,PROCESS_LOCAL, 2004 bytes)
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 1.0 (TID 5, localhost, partition 1,PROCESS_LOCAL, 2071 bytes)
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 1.0 (TID 6, localhost, partition 2,PROCESS_LOCAL, 2004 bytes)
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 1.0 (TID 7, localhost, partition 3,PROCESS_LOCAL, 2071 bytes)
19/03/14 09:26:30 INFO executor.Executor: Running task 2.0 in stage 1.0 (TID 6)
19/03/14 09:26:30 INFO executor.Executor: Running task 3.0 in stage 1.0 (TID 7)
19/03/14 09:26:30 INFO executor.Executor: Running task 0.0 in stage 1.0 (TID 4)
19/03/14 09:26:30 INFO executor.Executor: Running task 1.0 in stage 1.0 (TID 5)
19/03/14 09:26:30 INFO spark.CacheManager: Partition rdd_1_2 not found, computing it
19/03/14 09:26:30 INFO storage.MemoryStore: Block rdd_1_2 stored as values in memory (estimated size 16.0 B, free 11.1 KB)
19/03/14 09:26:30 INFO storage.BlockManagerInfo: Added rdd_1_2 in memory on localhost:43161 (size: 16.0 B, free: 511.1 MB)
19/03/14 09:26:30 INFO spark.CacheManager: Partition rdd_1_0 not found, computing it
19/03/14 09:26:30 INFO storage.MemoryStore: Block rdd_1_0 stored as values in memory (estimated size 16.0 B, free 11.1 KB)
19/03/14 09:26:30 INFO storage.BlockManagerInfo: Added rdd_1_0 in memory on localhost:43161 (size: 16.0 B, free: 511.1 MB)
19/03/14 09:26:30 INFO spark.CacheManager: Partition rdd_1_1 not found, computing it
19/03/14 09:26:30 INFO spark.CacheManager: Partition rdd_1_3 not found, computing it
19/03/14 09:26:30 INFO storage.MemoryStore: Block rdd_1_1 stored as values in memory (estimated size 4.7 KB, free 15.9 KB)
19/03/14 09:26:30 INFO storage.BlockManagerInfo: Added rdd_1_1 in memory on localhost:43161 (size: 4.7 KB, free: 511.1 MB)
19/03/14 09:26:30 INFO storage.MemoryStore: Block rdd_1_3 stored as values in memory (estimated size 4.7 KB, free 20.6 KB)
19/03/14 09:26:30 INFO storage.BlockManagerInfo: Added rdd_1_3 in memory on localhost:43161 (size: 4.7 KB, free: 511.1 MB)
19/03/14 09:26:30 INFO executor.Executor: Finished task 2.0 in stage 1.0 (TID 6). 1670 bytes result sent to driver
19/03/14 09:26:30 INFO executor.Executor: Finished task 0.0 in stage 1.0 (TID 4). 1670 bytes result sent to driver
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 1.0 (TID 6) in 17 ms on localhost (1/4)
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 1.0 (TID 4) in 24 ms on localhost (2/4)
19/03/14 09:26:30 INFO executor.Executor: Finished task 1.0 in stage 1.0 (TID 5). 1670 bytes result sent to driver
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 1.0 (TID 5) in 30 ms on localhost (3/4)
19/03/14 09:26:30 INFO executor.Executor: Finished task 3.0 in stage 1.0 (TID 7). 1670 bytes result sent to driver
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 1.0 (TID 7) in 34 ms on localhost (4/4)
19/03/14 09:26:30 INFO scheduler.DAGScheduler: ShuffleMapStage 1 (keyBy at RightOuterJoin.scala:75) finished in 0.042 s
19/03/14 09:26:30 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:30 INFO scheduler.DAGScheduler: running: Set()
19/03/14 09:26:30 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 1.0, whose tasks have all completed, from pool 
19/03/14 09:26:30 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 2)
19/03/14 09:26:30 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:30 INFO scheduler.DAGScheduler: Submitting ResultStage 2 (ShuffledRDD[8] at groupByKey at RightOuterJoin.scala:76), which has no missing parents
19/03/14 09:26:30 INFO storage.MemoryStore: Block broadcast_2 stored as values in memory (estimated size 4.8 KB, free 25.3 KB)
19/03/14 09:26:30 INFO storage.MemoryStore: Block broadcast_2_piece0 stored as bytes in memory (estimated size 2.5 KB, free 27.8 KB)
19/03/14 09:26:30 INFO storage.BlockManagerInfo: Added broadcast_2_piece0 in memory on localhost:43161 (size: 2.5 KB, free: 511.1 MB)
19/03/14 09:26:30 INFO spark.SparkContext: Created broadcast 2 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:30 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ResultStage 2 (ShuffledRDD[8] at groupByKey at RightOuterJoin.scala:76)
19/03/14 09:26:30 INFO scheduler.TaskSchedulerImpl: Adding task set 2.0 with 4 tasks
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 2.0 (TID 8, localhost, partition 0,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 2.0 (TID 9, localhost, partition 1,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 2.0 (TID 10, localhost, partition 2,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 2.0 (TID 11, localhost, partition 3,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:30 INFO executor.Executor: Running task 0.0 in stage 2.0 (TID 8)
19/03/14 09:26:30 INFO executor.Executor: Running task 1.0 in stage 2.0 (TID 9)
19/03/14 09:26:30 INFO executor.Executor: Running task 3.0 in stage 2.0 (TID 11)
19/03/14 09:26:30 INFO executor.Executor: Running task 2.0 in stage 2.0 (TID 10)
19/03/14 09:26:30 INFO storage.ShuffleBlockFetcherIterator: Getting 2 non-empty blocks out of 4 blocks
19/03/14 09:26:30 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:30 INFO storage.ShuffleBlockFetcherIterator: Getting 2 non-empty blocks out of 4 blocks
19/03/14 09:26:30 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 1 ms
19/03/14 09:26:30 INFO storage.ShuffleBlockFetcherIterator: Getting 2 non-empty blocks out of 4 blocks
19/03/14 09:26:30 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 1 ms
19/03/14 09:26:30 INFO storage.ShuffleBlockFetcherIterator: Getting 2 non-empty blocks out of 4 blocks
19/03/14 09:26:30 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:30 INFO executor.Executor: Finished task 3.0 in stage 2.0 (TID 11). 1124 bytes result sent to driver
19/03/14 09:26:30 INFO executor.Executor: Finished task 0.0 in stage 2.0 (TID 8). 1124 bytes result sent to driver
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 2.0 (TID 11) in 18 ms on localhost (1/4)
19/03/14 09:26:30 INFO executor.Executor: Finished task 1.0 in stage 2.0 (TID 9). 1124 bytes result sent to driver
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 2.0 (TID 8) in 23 ms on localhost (2/4)
19/03/14 09:26:30 INFO executor.Executor: Finished task 2.0 in stage 2.0 (TID 10). 1239 bytes result sent to driver
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 2.0 (TID 9) in 24 ms on localhost (3/4)
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 2.0 (TID 10) in 24 ms on localhost (4/4)
19/03/14 09:26:30 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 2.0, whose tasks have all completed, from pool 
19/03/14 09:26:30 INFO scheduler.DAGScheduler: ResultStage 2 (collect at RightOuterJoin.scala:77) finished in 0.029 s
19/03/14 09:26:30 INFO scheduler.DAGScheduler: Job 1 finished: collect at RightOuterJoin.scala:77, took 0.090288 s
19/03/14 09:26:30 INFO storage.MemoryStore: Block broadcast_3 stored as values in memory (estimated size 232.0 B, free 28.0 KB)
19/03/14 09:26:30 INFO storage.MemoryStore: Block broadcast_3_piece0 stored as bytes in memory (estimated size 128.0 B, free 28.1 KB)
19/03/14 09:26:30 INFO storage.BlockManagerInfo: Added broadcast_3_piece0 in memory on localhost:43161 (size: 128.0 B, free: 511.1 MB)
19/03/14 09:26:30 INFO spark.SparkContext: Created broadcast 3 from broadcast at RightOuterJoin.scala:86
19/03/14 09:26:30 INFO spark.SparkContext: Starting job: reduce at RNASeqAlignmentCounts.scala:72
19/03/14 09:26:30 INFO scheduler.DAGScheduler: Registering RDD 9 (map at RightOuterJoin.scala:90)
19/03/14 09:26:30 INFO scheduler.DAGScheduler: Registering RDD 10 (flatMap at RightOuterJoin.scala:94)
19/03/14 09:26:30 INFO scheduler.DAGScheduler: Got job 2 (reduce at RNASeqAlignmentCounts.scala:72) with 4 output partitions
19/03/14 09:26:30 INFO scheduler.DAGScheduler: Final stage: ResultStage 5 (reduce at RNASeqAlignmentCounts.scala:72)
19/03/14 09:26:30 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 3, ShuffleMapStage 4)
19/03/14 09:26:30 INFO scheduler.DAGScheduler: Missing parents: List(ShuffleMapStage 3, ShuffleMapStage 4)
19/03/14 09:26:30 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 3 (MapPartitionsRDD[9] at map at RightOuterJoin.scala:90), which has no missing parents
19/03/14 09:26:30 INFO storage.MemoryStore: Block broadcast_4 stored as values in memory (estimated size 3.4 KB, free 31.5 KB)
19/03/14 09:26:30 INFO storage.MemoryStore: Block broadcast_4_piece0 stored as bytes in memory (estimated size 2039.0 B, free 33.5 KB)
19/03/14 09:26:30 INFO storage.BlockManagerInfo: Added broadcast_4_piece0 in memory on localhost:43161 (size: 2039.0 B, free: 511.1 MB)
19/03/14 09:26:30 INFO spark.SparkContext: Created broadcast 4 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:30 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 3 (MapPartitionsRDD[9] at map at RightOuterJoin.scala:90)
19/03/14 09:26:30 INFO scheduler.TaskSchedulerImpl: Adding task set 3.0 with 4 tasks
19/03/14 09:26:30 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 4 (MapPartitionsRDD[10] at flatMap at RightOuterJoin.scala:94), which has no missing parents
19/03/14 09:26:30 INFO storage.MemoryStore: Block broadcast_5 stored as values in memory (estimated size 3.7 KB, free 37.2 KB)
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 3.0 (TID 12, localhost, partition 0,PROCESS_LOCAL, 2004 bytes)
19/03/14 09:26:30 INFO storage.MemoryStore: Block broadcast_5_piece0 stored as bytes in memory (estimated size 2.1 KB, free 39.3 KB)
19/03/14 09:26:30 INFO storage.BlockManagerInfo: Added broadcast_5_piece0 in memory on localhost:43161 (size: 2.1 KB, free: 511.1 MB)
19/03/14 09:26:30 INFO spark.SparkContext: Created broadcast 5 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:30 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 4 (MapPartitionsRDD[10] at flatMap at RightOuterJoin.scala:94)
19/03/14 09:26:30 INFO scheduler.TaskSchedulerImpl: Adding task set 4.0 with 4 tasks
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 3.0 (TID 13, localhost, partition 1,PROCESS_LOCAL, 2071 bytes)
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 3.0 (TID 14, localhost, partition 2,PROCESS_LOCAL, 2004 bytes)
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 3.0 (TID 15, localhost, partition 3,PROCESS_LOCAL, 2071 bytes)
19/03/14 09:26:30 INFO executor.Executor: Running task 0.0 in stage 3.0 (TID 12)
19/03/14 09:26:30 INFO executor.Executor: Running task 2.0 in stage 3.0 (TID 14)
19/03/14 09:26:30 INFO executor.Executor: Running task 3.0 in stage 3.0 (TID 15)
19/03/14 09:26:30 INFO executor.Executor: Running task 1.0 in stage 3.0 (TID 13)
19/03/14 09:26:30 INFO storage.BlockManager: Found block rdd_1_2 locally
19/03/14 09:26:30 INFO storage.BlockManager: Found block rdd_1_0 locally
19/03/14 09:26:30 INFO storage.BlockManager: Found block rdd_1_1 locally
19/03/14 09:26:30 INFO storage.BlockManager: Found block rdd_1_3 locally
19/03/14 09:26:30 INFO executor.Executor: Finished task 0.0 in stage 3.0 (TID 12). 2240 bytes result sent to driver
19/03/14 09:26:30 INFO executor.Executor: Finished task 2.0 in stage 3.0 (TID 14). 2240 bytes result sent to driver
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 4.0 (TID 16, localhost, partition 0,PROCESS_LOCAL, 2079 bytes)
19/03/14 09:26:30 INFO executor.Executor: Running task 0.0 in stage 4.0 (TID 16)
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 4.0 (TID 17, localhost, partition 1,PROCESS_LOCAL, 2079 bytes)
19/03/14 09:26:30 INFO executor.Executor: Running task 1.0 in stage 4.0 (TID 17)
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 3.0 (TID 12) in 38 ms on localhost (1/4)
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 3.0 (TID 14) in 27 ms on localhost (2/4)
19/03/14 09:26:30 INFO executor.Executor: Finished task 1.0 in stage 3.0 (TID 13). 2240 bytes result sent to driver
19/03/14 09:26:30 INFO executor.Executor: Finished task 3.0 in stage 3.0 (TID 15). 2240 bytes result sent to driver
19/03/14 09:26:30 INFO storage.BlockManager: Found block rdd_0_0 locally
19/03/14 09:26:30 INFO storage.BlockManager: Found block rdd_0_1 locally
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 4.0 (TID 18, localhost, partition 2,PROCESS_LOCAL, 2079 bytes)
19/03/14 09:26:30 INFO executor.Executor: Running task 2.0 in stage 4.0 (TID 18)
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 4.0 (TID 19, localhost, partition 3,PROCESS_LOCAL, 2146 bytes)
19/03/14 09:26:30 INFO executor.Executor: Running task 3.0 in stage 4.0 (TID 19)
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 3.0 (TID 13) in 40 ms on localhost (3/4)
19/03/14 09:26:30 INFO storage.BlockManager: Found block rdd_0_2 locally
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 3.0 (TID 15) in 31 ms on localhost (4/4)
19/03/14 09:26:30 INFO scheduler.DAGScheduler: ShuffleMapStage 3 (map at RightOuterJoin.scala:90) finished in 0.050 s
19/03/14 09:26:30 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:30 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 3.0, whose tasks have all completed, from pool 
19/03/14 09:26:30 INFO scheduler.DAGScheduler: running: Set(ShuffleMapStage 4)
19/03/14 09:26:30 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 5)
19/03/14 09:26:30 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:30 INFO storage.BlockManager: Found block rdd_0_3 locally
19/03/14 09:26:30 INFO executor.Executor: Finished task 1.0 in stage 4.0 (TID 17). 2240 bytes result sent to driver
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 4.0 (TID 17) in 22 ms on localhost (1/4)
19/03/14 09:26:30 INFO executor.Executor: Finished task 2.0 in stage 4.0 (TID 18). 2240 bytes result sent to driver
19/03/14 09:26:30 INFO executor.Executor: Finished task 0.0 in stage 4.0 (TID 16). 2240 bytes result sent to driver
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 4.0 (TID 18) in 21 ms on localhost (2/4)
19/03/14 09:26:30 INFO executor.Executor: Finished task 3.0 in stage 4.0 (TID 19). 2240 bytes result sent to driver
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 4.0 (TID 16) in 31 ms on localhost (3/4)
19/03/14 09:26:30 INFO scheduler.DAGScheduler: ShuffleMapStage 4 (flatMap at RightOuterJoin.scala:94) finished in 0.047 s
19/03/14 09:26:30 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 4.0 (TID 19) in 24 ms on localhost (4/4)
19/03/14 09:26:30 INFO scheduler.DAGScheduler: running: Set()
19/03/14 09:26:30 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 5)
19/03/14 09:26:30 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:30 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 4.0, whose tasks have all completed, from pool 
19/03/14 09:26:30 INFO scheduler.DAGScheduler: Submitting ResultStage 5 (MapPartitionsRDD[16] at flatMap at RNASeqAlignmentCounts.scala:71), which has no missing parents
19/03/14 09:26:30 INFO storage.MemoryStore: Block broadcast_6 stored as values in memory (estimated size 3.8 KB, free 43.1 KB)
19/03/14 09:26:30 INFO storage.MemoryStore: Block broadcast_6_piece0 stored as bytes in memory (estimated size 2047.0 B, free 45.1 KB)
19/03/14 09:26:30 INFO storage.BlockManagerInfo: Added broadcast_6_piece0 in memory on localhost:43161 (size: 2047.0 B, free: 511.1 MB)
19/03/14 09:26:30 INFO spark.SparkContext: Created broadcast 6 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:30 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ResultStage 5 (MapPartitionsRDD[16] at flatMap at RNASeqAlignmentCounts.scala:71)
19/03/14 09:26:30 INFO scheduler.TaskSchedulerImpl: Adding task set 5.0 with 4 tasks
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 5.0 (TID 20, localhost, partition 0,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 5.0 (TID 21, localhost, partition 1,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 5.0 (TID 22, localhost, partition 2,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 5.0 (TID 23, localhost, partition 3,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:30 INFO executor.Executor: Running task 1.0 in stage 5.0 (TID 21)
19/03/14 09:26:30 INFO executor.Executor: Running task 0.0 in stage 5.0 (TID 20)
19/03/14 09:26:30 INFO executor.Executor: Running task 3.0 in stage 5.0 (TID 23)
19/03/14 09:26:30 INFO executor.Executor: Running task 2.0 in stage 5.0 (TID 22)
19/03/14 09:26:30 INFO spark.CacheManager: Partition rdd_14_1 not found, computing it
19/03/14 09:26:30 INFO storage.ShuffleBlockFetcherIterator: Getting 2 non-empty blocks out of 4 blocks
19/03/14 09:26:30 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:30 INFO spark.CacheManager: Partition rdd_14_0 not found, computing it
19/03/14 09:26:30 INFO spark.CacheManager: Partition rdd_14_3 not found, computing it
19/03/14 09:26:30 INFO spark.CacheManager: Partition rdd_14_2 not found, computing it
19/03/14 09:26:30 INFO storage.ShuffleBlockFetcherIterator: Getting 2 non-empty blocks out of 4 blocks
19/03/14 09:26:30 INFO storage.ShuffleBlockFetcherIterator: Getting 2 non-empty blocks out of 4 blocks
19/03/14 09:26:30 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 1 ms
19/03/14 09:26:30 INFO storage.ShuffleBlockFetcherIterator: Getting 2 non-empty blocks out of 4 blocks
19/03/14 09:26:30 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:30 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:30 INFO storage.ShuffleBlockFetcherIterator: Getting 4 non-empty blocks out of 4 blocks
19/03/14 09:26:30 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:30 INFO storage.ShuffleBlockFetcherIterator: Getting 4 non-empty blocks out of 4 blocks
19/03/14 09:26:30 INFO storage.ShuffleBlockFetcherIterator: Getting 4 non-empty blocks out of 4 blocks
19/03/14 09:26:30 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 1 ms
19/03/14 09:26:30 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:30 INFO storage.ShuffleBlockFetcherIterator: Getting 4 non-empty blocks out of 4 blocks
19/03/14 09:26:30 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:30 INFO storage.MemoryStore: Block rdd_14_2 stored as values in memory (estimated size 16.0 B, free 45.1 KB)
19/03/14 09:26:30 INFO storage.BlockManagerInfo: Added rdd_14_2 in memory on localhost:43161 (size: 16.0 B, free: 511.1 MB)
19/03/14 09:26:30 INFO storage.MemoryStore: Block rdd_14_0 stored as values in memory (estimated size 392.0 B, free 45.5 KB)
19/03/14 09:26:30 INFO storage.BlockManagerInfo: Added rdd_14_0 in memory on localhost:43161 (size: 392.0 B, free: 511.1 MB)
19/03/14 09:26:30 INFO storage.MemoryStore: Block rdd_14_3 stored as values in memory (estimated size 16.0 B, free 45.5 KB)
19/03/14 09:26:30 INFO storage.BlockManagerInfo: Added rdd_14_3 in memory on localhost:43161 (size: 16.0 B, free: 511.1 MB)
19/03/14 09:26:30 INFO storage.MemoryStore: Block rdd_14_1 stored as values in memory (estimated size 6.0 KB, free 51.5 KB)
19/03/14 09:26:30 INFO executor.Executor: Finished task 2.0 in stage 5.0 (TID 22). 1704 bytes result sent to driver
19/03/14 09:26:30 INFO storage.BlockManagerInfo: Added rdd_14_1 in memory on localhost:43161 (size: 6.0 KB, free: 511.1 MB)
19/03/14 09:26:30 INFO executor.Executor: Finished task 0.0 in stage 5.0 (TID 20). 1767 bytes result sent to driver
19/03/14 09:26:30 INFO executor.Executor: Finished task 3.0 in stage 5.0 (TID 23). 1704 bytes result sent to driver
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 5.0 (TID 22) in 21 ms on localhost (1/4)
19/03/14 09:26:30 INFO executor.Executor: Finished task 1.0 in stage 5.0 (TID 21). 1767 bytes result sent to driver
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 5.0 (TID 23) in 23 ms on localhost (2/4)
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 5.0 (TID 20) in 26 ms on localhost (3/4)
19/03/14 09:26:30 INFO scheduler.DAGScheduler: ResultStage 5 (reduce at RNASeqAlignmentCounts.scala:72) finished in 0.029 s
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 5.0 (TID 21) in 28 ms on localhost (4/4)
19/03/14 09:26:30 INFO scheduler.DAGScheduler: Job 2 finished: reduce at RNASeqAlignmentCounts.scala:72, took 0.119054 s
19/03/14 09:26:30 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 5.0, whose tasks have all completed, from pool 
19/03/14 09:26:30 INFO spark.SparkContext: Starting job: count at TranscriptCounts.scala:43
19/03/14 09:26:30 INFO scheduler.DAGScheduler: Got job 3 (count at TranscriptCounts.scala:43) with 4 output partitions
19/03/14 09:26:30 INFO scheduler.DAGScheduler: Final stage: ResultStage 6 (count at TranscriptCounts.scala:43)
19/03/14 09:26:30 INFO scheduler.DAGScheduler: Parents of final stage: List()
19/03/14 09:26:30 INFO scheduler.DAGScheduler: Missing parents: List()
19/03/14 09:26:30 INFO scheduler.DAGScheduler: Submitting ResultStage 6 (MapPartitionsRDD[17] at filter at TranscriptCounts.scala:42), which has no missing parents
19/03/14 09:26:30 INFO storage.MemoryStore: Block broadcast_7 stored as values in memory (estimated size 1808.0 B, free 53.3 KB)
19/03/14 09:26:30 INFO storage.MemoryStore: Block broadcast_7_piece0 stored as bytes in memory (estimated size 1186.0 B, free 54.5 KB)
19/03/14 09:26:30 INFO storage.BlockManagerInfo: Added broadcast_7_piece0 in memory on localhost:43161 (size: 1186.0 B, free: 511.1 MB)
19/03/14 09:26:30 INFO spark.SparkContext: Created broadcast 7 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:30 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ResultStage 6 (MapPartitionsRDD[17] at filter at TranscriptCounts.scala:42)
19/03/14 09:26:30 INFO scheduler.TaskSchedulerImpl: Adding task set 6.0 with 4 tasks
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 6.0 (TID 24, localhost, partition 0,PROCESS_LOCAL, 2015 bytes)
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 6.0 (TID 25, localhost, partition 1,PROCESS_LOCAL, 2082 bytes)
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 6.0 (TID 26, localhost, partition 2,PROCESS_LOCAL, 2015 bytes)
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 6.0 (TID 27, localhost, partition 3,PROCESS_LOCAL, 2082 bytes)
19/03/14 09:26:30 INFO executor.Executor: Running task 0.0 in stage 6.0 (TID 24)
19/03/14 09:26:30 INFO executor.Executor: Running task 1.0 in stage 6.0 (TID 25)
19/03/14 09:26:30 INFO executor.Executor: Running task 3.0 in stage 6.0 (TID 27)
19/03/14 09:26:30 INFO executor.Executor: Running task 2.0 in stage 6.0 (TID 26)
19/03/14 09:26:30 INFO storage.BlockManager: Found block rdd_1_0 locally
19/03/14 09:26:30 INFO storage.BlockManager: Found block rdd_1_2 locally
19/03/14 09:26:30 INFO storage.BlockManager: Found block rdd_1_3 locally
19/03/14 09:26:30 INFO storage.BlockManager: Found block rdd_1_1 locally
19/03/14 09:26:30 INFO executor.Executor: Finished task 2.0 in stage 6.0 (TID 26). 2057 bytes result sent to driver
19/03/14 09:26:30 INFO executor.Executor: Finished task 0.0 in stage 6.0 (TID 24). 2057 bytes result sent to driver
19/03/14 09:26:30 INFO executor.Executor: Finished task 1.0 in stage 6.0 (TID 25). 2057 bytes result sent to driver
19/03/14 09:26:30 INFO executor.Executor: Finished task 3.0 in stage 6.0 (TID 27). 2057 bytes result sent to driver
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 6.0 (TID 27) in 13 ms on localhost (1/4)
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 6.0 (TID 24) in 25 ms on localhost (2/4)
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 6.0 (TID 25) in 19 ms on localhost (3/4)
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 6.0 (TID 26) in 17 ms on localhost (4/4)
19/03/14 09:26:30 INFO scheduler.DAGScheduler: ResultStage 6 (count at TranscriptCounts.scala:43) finished in 0.025 s
19/03/14 09:26:30 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 6.0, whose tasks have all completed, from pool 
19/03/14 09:26:30 INFO scheduler.DAGScheduler: Job 3 finished: count at TranscriptCounts.scala:43, took 0.034909 s
19/03/14 09:26:30 INFO spark.SparkContext: Starting job: count at TranscriptCounts.scala:51
19/03/14 09:26:30 INFO spark.MapOutputTrackerMaster: Size of output statuses for shuffle 2 is 158 bytes
19/03/14 09:26:30 INFO spark.MapOutputTrackerMaster: Size of output statuses for shuffle 1 is 165 bytes
19/03/14 09:26:30 INFO scheduler.DAGScheduler: Registering RDD 19 (distinct at TranscriptCounts.scala:50)
19/03/14 09:26:30 INFO scheduler.DAGScheduler: Got job 4 (count at TranscriptCounts.scala:51) with 4 output partitions
19/03/14 09:26:30 INFO scheduler.DAGScheduler: Final stage: ResultStage 10 (count at TranscriptCounts.scala:51)
19/03/14 09:26:30 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 9)
19/03/14 09:26:30 INFO scheduler.DAGScheduler: Missing parents: List(ShuffleMapStage 9)
19/03/14 09:26:30 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 9 (MapPartitionsRDD[19] at distinct at TranscriptCounts.scala:50), which has no missing parents
19/03/14 09:26:30 INFO storage.MemoryStore: Block broadcast_8 stored as values in memory (estimated size 4.0 KB, free 58.4 KB)
19/03/14 09:26:30 INFO storage.MemoryStore: Block broadcast_8_piece0 stored as bytes in memory (estimated size 2.1 KB, free 60.5 KB)
19/03/14 09:26:30 INFO storage.BlockManagerInfo: Added broadcast_8_piece0 in memory on localhost:43161 (size: 2.1 KB, free: 511.1 MB)
19/03/14 09:26:30 INFO spark.SparkContext: Created broadcast 8 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:30 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 9 (MapPartitionsRDD[19] at distinct at TranscriptCounts.scala:50)
19/03/14 09:26:30 INFO scheduler.TaskSchedulerImpl: Adding task set 9.0 with 4 tasks
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 9.0 (TID 28, localhost, partition 0,PROCESS_LOCAL, 1956 bytes)
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 9.0 (TID 29, localhost, partition 1,PROCESS_LOCAL, 1956 bytes)
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 9.0 (TID 30, localhost, partition 2,PROCESS_LOCAL, 1956 bytes)
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 9.0 (TID 31, localhost, partition 3,PROCESS_LOCAL, 1956 bytes)
19/03/14 09:26:30 INFO executor.Executor: Running task 0.0 in stage 9.0 (TID 28)
19/03/14 09:26:30 INFO executor.Executor: Running task 3.0 in stage 9.0 (TID 31)
19/03/14 09:26:30 INFO executor.Executor: Running task 2.0 in stage 9.0 (TID 30)
19/03/14 09:26:30 INFO executor.Executor: Running task 1.0 in stage 9.0 (TID 29)
19/03/14 09:26:30 INFO storage.BlockManager: Found block rdd_14_3 locally
19/03/14 09:26:30 INFO storage.BlockManager: Found block rdd_14_0 locally
19/03/14 09:26:30 INFO storage.BlockManager: Found block rdd_14_2 locally
19/03/14 09:26:30 INFO storage.BlockManager: Found block rdd_14_1 locally
19/03/14 09:26:30 INFO executor.Executor: Finished task 3.0 in stage 9.0 (TID 31). 2240 bytes result sent to driver
19/03/14 09:26:30 INFO executor.Executor: Finished task 0.0 in stage 9.0 (TID 28). 2240 bytes result sent to driver
19/03/14 09:26:30 INFO executor.Executor: Finished task 2.0 in stage 9.0 (TID 30). 2240 bytes result sent to driver
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 9.0 (TID 31) in 10 ms on localhost (1/4)
19/03/14 09:26:30 INFO executor.Executor: Finished task 1.0 in stage 9.0 (TID 29). 2240 bytes result sent to driver
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 9.0 (TID 28) in 13 ms on localhost (2/4)
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 9.0 (TID 30) in 13 ms on localhost (3/4)
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 9.0 (TID 29) in 15 ms on localhost (4/4)
19/03/14 09:26:30 INFO scheduler.DAGScheduler: ShuffleMapStage 9 (distinct at TranscriptCounts.scala:50) finished in 0.016 s
19/03/14 09:26:30 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:30 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 9.0, whose tasks have all completed, from pool 
19/03/14 09:26:30 INFO scheduler.DAGScheduler: running: Set()
19/03/14 09:26:30 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 10)
19/03/14 09:26:30 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:30 INFO scheduler.DAGScheduler: Submitting ResultStage 10 (MapPartitionsRDD[21] at distinct at TranscriptCounts.scala:50), which has no missing parents
19/03/14 09:26:30 INFO storage.MemoryStore: Block broadcast_9 stored as values in memory (estimated size 3.1 KB, free 63.6 KB)
19/03/14 09:26:30 INFO storage.MemoryStore: Block broadcast_9_piece0 stored as bytes in memory (estimated size 1856.0 B, free 65.5 KB)
19/03/14 09:26:30 INFO storage.BlockManagerInfo: Added broadcast_9_piece0 in memory on localhost:43161 (size: 1856.0 B, free: 511.1 MB)
19/03/14 09:26:30 INFO spark.SparkContext: Created broadcast 9 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:30 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ResultStage 10 (MapPartitionsRDD[21] at distinct at TranscriptCounts.scala:50)
19/03/14 09:26:30 INFO scheduler.TaskSchedulerImpl: Adding task set 10.0 with 4 tasks
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 10.0 (TID 32, localhost, partition 1,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 10.0 (TID 33, localhost, partition 0,PROCESS_LOCAL, 1894 bytes)
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 10.0 (TID 34, localhost, partition 2,PROCESS_LOCAL, 1894 bytes)
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 10.0 (TID 35, localhost, partition 3,PROCESS_LOCAL, 1894 bytes)
19/03/14 09:26:30 INFO executor.Executor: Running task 2.0 in stage 10.0 (TID 34)
19/03/14 09:26:30 INFO executor.Executor: Running task 0.0 in stage 10.0 (TID 33)
19/03/14 09:26:30 INFO executor.Executor: Running task 1.0 in stage 10.0 (TID 32)
19/03/14 09:26:30 INFO executor.Executor: Running task 3.0 in stage 10.0 (TID 35)
19/03/14 09:26:30 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:30 INFO storage.ShuffleBlockFetcherIterator: Getting 0 non-empty blocks out of 4 blocks
19/03/14 09:26:30 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:30 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:30 INFO storage.ShuffleBlockFetcherIterator: Getting 0 non-empty blocks out of 4 blocks
19/03/14 09:26:30 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:30 INFO storage.ShuffleBlockFetcherIterator: Getting 0 non-empty blocks out of 4 blocks
19/03/14 09:26:30 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:30 INFO executor.Executor: Finished task 3.0 in stage 10.0 (TID 35). 1123 bytes result sent to driver
19/03/14 09:26:30 INFO executor.Executor: Finished task 1.0 in stage 10.0 (TID 32). 1123 bytes result sent to driver
19/03/14 09:26:30 INFO executor.Executor: Finished task 2.0 in stage 10.0 (TID 34). 1123 bytes result sent to driver
19/03/14 09:26:30 INFO executor.Executor: Finished task 0.0 in stage 10.0 (TID 33). 1123 bytes result sent to driver
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 10.0 (TID 35) in 10 ms on localhost (1/4)
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 10.0 (TID 34) in 11 ms on localhost (2/4)
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 10.0 (TID 32) in 13 ms on localhost (3/4)
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 10.0 (TID 33) in 12 ms on localhost (4/4)
19/03/14 09:26:30 INFO scheduler.DAGScheduler: ResultStage 10 (count at TranscriptCounts.scala:51) finished in 0.013 s
19/03/14 09:26:30 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 10.0, whose tasks have all completed, from pool 
19/03/14 09:26:30 INFO scheduler.DAGScheduler: Job 4 finished: count at TranscriptCounts.scala:51, took 0.054203 s
19/03/14 09:26:30 INFO rdd.ParallelCollectionRDD: Removing RDD 0 from persistence list
19/03/14 09:26:30 INFO storage.BlockManager: Removing RDD 0
19/03/14 09:26:30 INFO spark.SparkContext: Starting job: collect at BroadcastRegionJoin.scala:100
19/03/14 09:26:30 INFO scheduler.DAGScheduler: Registering RDD 28 (keyBy at BroadcastRegionJoin.scala:98)
19/03/14 09:26:30 INFO scheduler.DAGScheduler: Got job 5 (collect at BroadcastRegionJoin.scala:100) with 4 output partitions
19/03/14 09:26:30 INFO scheduler.DAGScheduler: Final stage: ResultStage 12 (collect at BroadcastRegionJoin.scala:100)
19/03/14 09:26:30 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 11)
19/03/14 09:26:30 INFO scheduler.DAGScheduler: Missing parents: List(ShuffleMapStage 11)
19/03/14 09:26:30 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 11 (MapPartitionsRDD[28] at keyBy at BroadcastRegionJoin.scala:98), which has no missing parents
19/03/14 09:26:30 INFO storage.MemoryStore: Block broadcast_10 stored as values in memory (estimated size 4.2 KB, free 68.0 KB)
19/03/14 09:26:30 INFO storage.MemoryStore: Block broadcast_10_piece0 stored as bytes in memory (estimated size 2.2 KB, free 70.2 KB)
19/03/14 09:26:30 INFO storage.BlockManagerInfo: Added broadcast_10_piece0 in memory on localhost:43161 (size: 2.2 KB, free: 511.1 MB)
19/03/14 09:26:30 INFO spark.SparkContext: Created broadcast 10 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:30 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 11 (MapPartitionsRDD[28] at keyBy at BroadcastRegionJoin.scala:98)
19/03/14 09:26:30 INFO scheduler.TaskSchedulerImpl: Adding task set 11.0 with 4 tasks
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 11.0 (TID 36, localhost, partition 0,PROCESS_LOCAL, 2004 bytes)
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 11.0 (TID 37, localhost, partition 1,PROCESS_LOCAL, 2071 bytes)
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 11.0 (TID 38, localhost, partition 2,PROCESS_LOCAL, 2004 bytes)
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 11.0 (TID 39, localhost, partition 3,PROCESS_LOCAL, 2071 bytes)
19/03/14 09:26:30 INFO executor.Executor: Running task 3.0 in stage 11.0 (TID 39)
19/03/14 09:26:30 INFO executor.Executor: Running task 2.0 in stage 11.0 (TID 38)
19/03/14 09:26:30 INFO executor.Executor: Running task 0.0 in stage 11.0 (TID 36)
19/03/14 09:26:30 INFO executor.Executor: Running task 1.0 in stage 11.0 (TID 37)
19/03/14 09:26:30 INFO storage.BlockManager: Found block rdd_1_2 locally
19/03/14 09:26:30 INFO storage.BlockManager: Found block rdd_1_1 locally
19/03/14 09:26:30 INFO storage.BlockManager: Found block rdd_1_3 locally
19/03/14 09:26:30 INFO storage.BlockManager: Found block rdd_1_0 locally
19/03/14 09:26:30 INFO executor.Executor: Finished task 2.0 in stage 11.0 (TID 38). 2240 bytes result sent to driver
19/03/14 09:26:30 INFO executor.Executor: Finished task 0.0 in stage 11.0 (TID 36). 2240 bytes result sent to driver
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 11.0 (TID 38) in 16 ms on localhost (1/4)
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 11.0 (TID 36) in 23 ms on localhost (2/4)
19/03/14 09:26:30 INFO executor.Executor: Finished task 1.0 in stage 11.0 (TID 37). 2240 bytes result sent to driver
19/03/14 09:26:30 INFO executor.Executor: Finished task 3.0 in stage 11.0 (TID 39). 2240 bytes result sent to driver
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 11.0 (TID 37) in 27 ms on localhost (3/4)
19/03/14 09:26:30 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 11.0 (TID 39) in 23 ms on localhost (4/4)
19/03/14 09:26:30 INFO scheduler.DAGScheduler: ShuffleMapStage 11 (keyBy at BroadcastRegionJoin.scala:98) finished in 0.030 s
19/03/14 09:26:30 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:30 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 11.0, whose tasks have all completed, from pool 
19/03/14 09:26:30 INFO scheduler.DAGScheduler: running: Set()
19/03/14 09:26:30 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 12)
19/03/14 09:26:30 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:30 INFO scheduler.DAGScheduler: Submitting ResultStage 12 (ShuffledRDD[29] at groupByKey at BroadcastRegionJoin.scala:99), which has no missing parents
19/03/14 09:26:31 INFO storage.MemoryStore: Block broadcast_11 stored as values in memory (estimated size 5.0 KB, free 75.2 KB)
19/03/14 09:26:31 INFO storage.MemoryStore: Block broadcast_11_piece0 stored as bytes in memory (estimated size 2.5 KB, free 77.7 KB)
19/03/14 09:26:31 INFO storage.BlockManagerInfo: Added broadcast_11_piece0 in memory on localhost:43161 (size: 2.5 KB, free: 511.1 MB)
19/03/14 09:26:31 INFO spark.SparkContext: Created broadcast 11 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ResultStage 12 (ShuffledRDD[29] at groupByKey at BroadcastRegionJoin.scala:99)
19/03/14 09:26:31 INFO scheduler.TaskSchedulerImpl: Adding task set 12.0 with 4 tasks
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 12.0 (TID 40, localhost, partition 0,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 12.0 (TID 41, localhost, partition 1,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 12.0 (TID 42, localhost, partition 2,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 12.0 (TID 43, localhost, partition 3,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:31 INFO executor.Executor: Running task 0.0 in stage 12.0 (TID 40)
19/03/14 09:26:31 INFO executor.Executor: Running task 2.0 in stage 12.0 (TID 42)
19/03/14 09:26:31 INFO executor.Executor: Running task 1.0 in stage 12.0 (TID 41)
19/03/14 09:26:31 INFO executor.Executor: Running task 3.0 in stage 12.0 (TID 43)
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Getting 2 non-empty blocks out of 4 blocks
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Getting 2 non-empty blocks out of 4 blocks
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Getting 2 non-empty blocks out of 4 blocks
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Getting 2 non-empty blocks out of 4 blocks
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:31 INFO executor.Executor: Finished task 0.0 in stage 12.0 (TID 40). 1124 bytes result sent to driver
19/03/14 09:26:31 INFO executor.Executor: Finished task 1.0 in stage 12.0 (TID 41). 1124 bytes result sent to driver
19/03/14 09:26:31 INFO executor.Executor: Finished task 3.0 in stage 12.0 (TID 43). 1124 bytes result sent to driver
19/03/14 09:26:31 INFO executor.Executor: Finished task 2.0 in stage 12.0 (TID 42). 1239 bytes result sent to driver
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 12.0 (TID 40) in 16 ms on localhost (1/4)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 12.0 (TID 41) in 17 ms on localhost (2/4)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 12.0 (TID 43) in 14 ms on localhost (3/4)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 12.0 (TID 42) in 18 ms on localhost (4/4)
19/03/14 09:26:31 INFO scheduler.DAGScheduler: ResultStage 12 (collect at BroadcastRegionJoin.scala:100) finished in 0.021 s
19/03/14 09:26:31 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 12.0, whose tasks have all completed, from pool 
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Job 5 finished: collect at BroadcastRegionJoin.scala:100, took 0.071285 s
19/03/14 09:26:31 INFO storage.MemoryStore: Block broadcast_12 stored as values in memory (estimated size 232.0 B, free 77.9 KB)
19/03/14 09:26:31 INFO storage.MemoryStore: Block broadcast_12_piece0 stored as bytes in memory (estimated size 128.0 B, free 78.0 KB)
19/03/14 09:26:31 INFO storage.BlockManagerInfo: Added broadcast_12_piece0 in memory on localhost:43161 (size: 128.0 B, free: 511.1 MB)
19/03/14 09:26:31 INFO spark.SparkContext: Created broadcast 12 from broadcast at BroadcastRegionJoin.scala:109
19/03/14 09:26:31 INFO spark.SparkContext: Starting job: collect at CoverageStats.scala:174
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Registering RDD 22 (flatMap at ReadCoverage.scala:59)
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Registering RDD 32 (flatMap at BroadcastRegionJoin.scala:118)
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Registering RDD 30 (map at BroadcastRegionJoin.scala:113)
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Registering RDD 39 (map at CoverageStats.scala:172)
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Got job 6 (collect at CoverageStats.scala:174) with 4 output partitions
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Final stage: ResultStage 17 (collect at CoverageStats.scala:174)
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 16)
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Missing parents: List(ShuffleMapStage 16)
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 13 (MapPartitionsRDD[22] at flatMap at ReadCoverage.scala:59), which has no missing parents
19/03/14 09:26:31 INFO storage.MemoryStore: Block broadcast_13 stored as values in memory (estimated size 2.7 KB, free 80.8 KB)
19/03/14 09:26:31 INFO storage.MemoryStore: Block broadcast_13_piece0 stored as bytes in memory (estimated size 1677.0 B, free 82.4 KB)
19/03/14 09:26:31 INFO storage.BlockManagerInfo: Added broadcast_13_piece0 in memory on localhost:43161 (size: 1677.0 B, free: 511.1 MB)
19/03/14 09:26:31 INFO spark.SparkContext: Created broadcast 13 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 13 (MapPartitionsRDD[22] at flatMap at ReadCoverage.scala:59)
19/03/14 09:26:31 INFO scheduler.TaskSchedulerImpl: Adding task set 13.0 with 4 tasks
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 15 (MapPartitionsRDD[30] at map at BroadcastRegionJoin.scala:113), which has no missing parents
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 13.0 (TID 44, localhost, partition 0,PROCESS_LOCAL, 2079 bytes)
19/03/14 09:26:31 INFO storage.MemoryStore: Block broadcast_14 stored as values in memory (estimated size 3.6 KB, free 86.0 KB)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 13.0 (TID 45, localhost, partition 1,PROCESS_LOCAL, 2079 bytes)
19/03/14 09:26:31 INFO storage.MemoryStore: Block broadcast_14_piece0 stored as bytes in memory (estimated size 2.1 KB, free 88.1 KB)
19/03/14 09:26:31 INFO storage.BlockManagerInfo: Added broadcast_14_piece0 in memory on localhost:43161 (size: 2.1 KB, free: 511.1 MB)
19/03/14 09:26:31 INFO spark.SparkContext: Created broadcast 14 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 13.0 (TID 46, localhost, partition 2,PROCESS_LOCAL, 2079 bytes)
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 15 (MapPartitionsRDD[30] at map at BroadcastRegionJoin.scala:113)
19/03/14 09:26:31 INFO scheduler.TaskSchedulerImpl: Adding task set 15.0 with 4 tasks
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 13.0 (TID 47, localhost, partition 3,PROCESS_LOCAL, 2146 bytes)
19/03/14 09:26:31 INFO executor.Executor: Running task 0.0 in stage 13.0 (TID 44)
19/03/14 09:26:31 INFO executor.Executor: Running task 2.0 in stage 13.0 (TID 46)
19/03/14 09:26:31 INFO executor.Executor: Running task 3.0 in stage 13.0 (TID 47)
19/03/14 09:26:31 INFO executor.Executor: Running task 1.0 in stage 13.0 (TID 45)
19/03/14 09:26:31 INFO executor.Executor: Finished task 2.0 in stage 13.0 (TID 46). 1090 bytes result sent to driver
19/03/14 09:26:31 INFO executor.Executor: Finished task 1.0 in stage 13.0 (TID 45). 1090 bytes result sent to driver
19/03/14 09:26:31 INFO executor.Executor: Finished task 0.0 in stage 13.0 (TID 44). 1090 bytes result sent to driver
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 15.0 (TID 48, localhost, partition 0,PROCESS_LOCAL, 2004 bytes)
19/03/14 09:26:31 INFO executor.Executor: Running task 0.0 in stage 15.0 (TID 48)
19/03/14 09:26:31 INFO storage.BlockManager: Found block rdd_1_0 locally
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 15.0 (TID 49, localhost, partition 1,PROCESS_LOCAL, 2071 bytes)
19/03/14 09:26:31 INFO executor.Executor: Running task 1.0 in stage 15.0 (TID 49)
19/03/14 09:26:31 INFO executor.Executor: Finished task 0.0 in stage 15.0 (TID 48). 2240 bytes result sent to driver
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 15.0 (TID 50, localhost, partition 2,PROCESS_LOCAL, 2004 bytes)
19/03/14 09:26:31 INFO storage.BlockManager: Found block rdd_1_1 locally
19/03/14 09:26:31 INFO executor.Executor: Running task 2.0 in stage 15.0 (TID 50)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 13.0 (TID 46) in 40 ms on localhost (1/4)
19/03/14 09:26:31 INFO executor.Executor: Finished task 3.0 in stage 13.0 (TID 47). 1090 bytes result sent to driver
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 15.0 (TID 51, localhost, partition 3,PROCESS_LOCAL, 2071 bytes)
19/03/14 09:26:31 INFO storage.BlockManager: Found block rdd_1_2 locally
19/03/14 09:26:31 INFO executor.Executor: Running task 3.0 in stage 15.0 (TID 51)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 13.0 (TID 44) in 47 ms on localhost (2/4)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 13.0 (TID 45) in 46 ms on localhost (3/4)
19/03/14 09:26:31 INFO executor.Executor: Finished task 2.0 in stage 15.0 (TID 50). 2240 bytes result sent to driver
19/03/14 09:26:31 INFO storage.BlockManager: Found block rdd_1_3 locally
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 13.0 (TID 47) in 43 ms on localhost (4/4)
19/03/14 09:26:31 INFO scheduler.DAGScheduler: ShuffleMapStage 13 (flatMap at ReadCoverage.scala:59) finished in 0.050 s
19/03/14 09:26:31 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 13.0, whose tasks have all completed, from pool 
19/03/14 09:26:31 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:31 INFO scheduler.DAGScheduler: running: Set(ShuffleMapStage 15)
19/03/14 09:26:31 INFO scheduler.DAGScheduler: waiting: Set(ShuffleMapStage 16, ResultStage 17, ShuffleMapStage 14)
19/03/14 09:26:31 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 15.0 (TID 48) in 17 ms on localhost (1/4)
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 14 (MapPartitionsRDD[32] at flatMap at BroadcastRegionJoin.scala:118), which has no missing parents
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 15.0 (TID 50) in 11 ms on localhost (2/4)
19/03/14 09:26:31 INFO storage.MemoryStore: Block broadcast_15 stored as values in memory (estimated size 4.3 KB, free 92.4 KB)
19/03/14 09:26:31 INFO executor.Executor: Finished task 1.0 in stage 15.0 (TID 49). 2240 bytes result sent to driver
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 15.0 (TID 49) in 18 ms on localhost (3/4)
19/03/14 09:26:31 INFO storage.MemoryStore: Block broadcast_15_piece0 stored as bytes in memory (estimated size 2.4 KB, free 94.8 KB)
19/03/14 09:26:31 INFO storage.BlockManagerInfo: Added broadcast_15_piece0 in memory on localhost:43161 (size: 2.4 KB, free: 511.1 MB)
19/03/14 09:26:31 INFO spark.SparkContext: Created broadcast 15 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 14 (MapPartitionsRDD[32] at flatMap at BroadcastRegionJoin.scala:118)
19/03/14 09:26:31 INFO scheduler.TaskSchedulerImpl: Adding task set 14.0 with 4 tasks
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 14.0 (TID 52, localhost, partition 0,NODE_LOCAL, 1883 bytes)
19/03/14 09:26:31 INFO executor.Executor: Finished task 3.0 in stage 15.0 (TID 51). 2240 bytes result sent to driver
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 14.0 (TID 53, localhost, partition 2,NODE_LOCAL, 1883 bytes)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 14.0 (TID 54, localhost, partition 1,PROCESS_LOCAL, 1883 bytes)
19/03/14 09:26:31 INFO executor.Executor: Running task 0.0 in stage 14.0 (TID 52)
19/03/14 09:26:31 INFO executor.Executor: Running task 1.0 in stage 14.0 (TID 54)
19/03/14 09:26:31 INFO executor.Executor: Running task 2.0 in stage 14.0 (TID 53)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 14.0 (TID 55, localhost, partition 3,PROCESS_LOCAL, 1883 bytes)
19/03/14 09:26:31 INFO executor.Executor: Running task 3.0 in stage 14.0 (TID 55)
19/03/14 09:26:31 INFO spark.CacheManager: Partition rdd_23_2 not found, computing it
19/03/14 09:26:31 INFO spark.CacheManager: Partition rdd_23_0 not found, computing it
19/03/14 09:26:31 INFO spark.CacheManager: Partition rdd_23_1 not found, computing it
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Getting 4 non-empty blocks out of 4 blocks
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Getting 4 non-empty blocks out of 4 blocks
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 1 ms
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 1 ms
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Getting 0 non-empty blocks out of 4 blocks
19/03/14 09:26:31 INFO spark.CacheManager: Partition rdd_23_3 not found, computing it
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Getting 0 non-empty blocks out of 4 blocks
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 15.0 (TID 51) in 19 ms on localhost (4/4)
19/03/14 09:26:31 INFO scheduler.DAGScheduler: ShuffleMapStage 15 (map at BroadcastRegionJoin.scala:113) finished in 0.054 s
19/03/14 09:26:31 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 15.0, whose tasks have all completed, from pool 
19/03/14 09:26:31 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:31 INFO scheduler.DAGScheduler: running: Set(ShuffleMapStage 14)
19/03/14 09:26:31 INFO scheduler.DAGScheduler: waiting: Set(ShuffleMapStage 16, ResultStage 17)
19/03/14 09:26:31 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:31 INFO storage.MemoryStore: Block rdd_23_1 stored as values in memory (estimated size 16.0 B, free 94.8 KB)
19/03/14 09:26:31 INFO storage.MemoryStore: Block rdd_23_3 stored as values in memory (estimated size 16.0 B, free 94.9 KB)
19/03/14 09:26:31 INFO storage.BlockManagerInfo: Added rdd_23_1 in memory on localhost:43161 (size: 16.0 B, free: 511.1 MB)
19/03/14 09:26:31 INFO storage.BlockManagerInfo: Added rdd_23_3 in memory on localhost:43161 (size: 16.0 B, free: 511.1 MB)
19/03/14 09:26:31 INFO executor.Executor: Finished task 1.0 in stage 14.0 (TID 54). 1886 bytes result sent to driver
19/03/14 09:26:31 INFO executor.Executor: Finished task 3.0 in stage 14.0 (TID 55). 1886 bytes result sent to driver
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 14.0 (TID 55) in 11 ms on localhost (1/4)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 14.0 (TID 54) in 14 ms on localhost (2/4)
19/03/14 09:26:31 INFO storage.MemoryStore: Block rdd_23_0 stored as values in memory (estimated size 22.8 KB, free 117.6 KB)
19/03/14 09:26:31 INFO storage.MemoryStore: Block rdd_23_2 stored as values in memory (estimated size 22.8 KB, free 140.4 KB)
19/03/14 09:26:31 INFO storage.BlockManagerInfo: Added rdd_23_0 in memory on localhost:43161 (size: 22.8 KB, free: 511.1 MB)
19/03/14 09:26:31 INFO storage.BlockManagerInfo: Added rdd_23_2 in memory on localhost:43161 (size: 22.8 KB, free: 511.0 MB)
19/03/14 09:26:31 INFO executor.Executor: Finished task 2.0 in stage 14.0 (TID 53). 1886 bytes result sent to driver
19/03/14 09:26:31 INFO executor.Executor: Finished task 0.0 in stage 14.0 (TID 52). 1886 bytes result sent to driver
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 14.0 (TID 53) in 112 ms on localhost (3/4)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 14.0 (TID 52) in 112 ms on localhost (4/4)
19/03/14 09:26:31 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 14.0, whose tasks have all completed, from pool 
19/03/14 09:26:31 INFO scheduler.DAGScheduler: ShuffleMapStage 14 (flatMap at BroadcastRegionJoin.scala:118) finished in 0.113 s
19/03/14 09:26:31 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:31 INFO scheduler.DAGScheduler: running: Set()
19/03/14 09:26:31 INFO scheduler.DAGScheduler: waiting: Set(ShuffleMapStage 16, ResultStage 17)
19/03/14 09:26:31 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 16 (MapPartitionsRDD[39] at map at CoverageStats.scala:172), which has no missing parents
19/03/14 09:26:31 INFO storage.MemoryStore: Block broadcast_16 stored as values in memory (estimated size 4.1 KB, free 144.5 KB)
19/03/14 09:26:31 INFO storage.MemoryStore: Block broadcast_16_piece0 stored as bytes in memory (estimated size 2.2 KB, free 146.7 KB)
19/03/14 09:26:31 INFO storage.BlockManagerInfo: Added broadcast_16_piece0 in memory on localhost:43161 (size: 2.2 KB, free: 511.0 MB)
19/03/14 09:26:31 INFO spark.SparkContext: Created broadcast 16 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 16 (MapPartitionsRDD[39] at map at CoverageStats.scala:172)
19/03/14 09:26:31 INFO scheduler.TaskSchedulerImpl: Adding task set 16.0 with 4 tasks
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 16.0 (TID 56, localhost, partition 0,PROCESS_LOCAL, 1956 bytes)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 16.0 (TID 57, localhost, partition 1,PROCESS_LOCAL, 1956 bytes)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 16.0 (TID 58, localhost, partition 2,PROCESS_LOCAL, 1956 bytes)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 16.0 (TID 59, localhost, partition 3,PROCESS_LOCAL, 1956 bytes)
19/03/14 09:26:31 INFO executor.Executor: Running task 0.0 in stage 16.0 (TID 56)
19/03/14 09:26:31 INFO executor.Executor: Running task 1.0 in stage 16.0 (TID 57)
19/03/14 09:26:31 INFO executor.Executor: Running task 3.0 in stage 16.0 (TID 59)
19/03/14 09:26:31 INFO executor.Executor: Running task 2.0 in stage 16.0 (TID 58)
19/03/14 09:26:31 INFO spark.CacheManager: Partition rdd_37_0 not found, computing it
19/03/14 09:26:31 INFO spark.CacheManager: Partition rdd_37_3 not found, computing it
19/03/14 09:26:31 INFO spark.CacheManager: Partition rdd_37_2 not found, computing it
19/03/14 09:26:31 INFO spark.CacheManager: Partition rdd_37_1 not found, computing it
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Getting 2 non-empty blocks out of 4 blocks
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Getting 2 non-empty blocks out of 4 blocks
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Getting 2 non-empty blocks out of 4 blocks
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Getting 2 non-empty blocks out of 4 blocks
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Getting 2 non-empty blocks out of 4 blocks
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Getting 2 non-empty blocks out of 4 blocks
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Getting 2 non-empty blocks out of 4 blocks
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Getting 2 non-empty blocks out of 4 blocks
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:31 INFO storage.MemoryStore: Block rdd_37_2 stored as values in memory (estimated size 16.0 B, free 146.7 KB)
19/03/14 09:26:31 INFO storage.MemoryStore: Block rdd_37_0 stored as values in memory (estimated size 16.0 B, free 146.7 KB)
19/03/14 09:26:31 INFO storage.BlockManagerInfo: Added rdd_37_2 in memory on localhost:43161 (size: 16.0 B, free: 511.0 MB)
19/03/14 09:26:31 INFO storage.BlockManagerInfo: Added rdd_37_0 in memory on localhost:43161 (size: 16.0 B, free: 511.0 MB)
19/03/14 09:26:31 INFO storage.MemoryStore: Block rdd_37_3 stored as values in memory (estimated size 16.0 B, free 146.7 KB)
19/03/14 09:26:31 INFO storage.BlockManagerInfo: Added rdd_37_3 in memory on localhost:43161 (size: 16.0 B, free: 511.0 MB)
19/03/14 09:26:31 INFO executor.Executor: Finished task 2.0 in stage 16.0 (TID 58). 1886 bytes result sent to driver
19/03/14 09:26:31 INFO executor.Executor: Finished task 0.0 in stage 16.0 (TID 56). 1886 bytes result sent to driver
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 16.0 (TID 58) in 15 ms on localhost (1/4)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 16.0 (TID 56) in 17 ms on localhost (2/4)
19/03/14 09:26:31 INFO executor.Executor: Finished task 3.0 in stage 16.0 (TID 59). 1886 bytes result sent to driver
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 16.0 (TID 59) in 17 ms on localhost (3/4)
19/03/14 09:26:31 INFO storage.MemoryStore: Block rdd_37_1 stored as values in memory (estimated size 45.8 KB, free 192.6 KB)
19/03/14 09:26:31 INFO storage.BlockManagerInfo: Added rdd_37_1 in memory on localhost:43161 (size: 45.8 KB, free: 511.0 MB)
19/03/14 09:26:31 INFO executor.Executor: Finished task 1.0 in stage 16.0 (TID 57). 1886 bytes result sent to driver
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 16.0 (TID 57) in 61 ms on localhost (4/4)
19/03/14 09:26:31 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 16.0, whose tasks have all completed, from pool 
19/03/14 09:26:31 INFO scheduler.DAGScheduler: ShuffleMapStage 16 (map at CoverageStats.scala:172) finished in 0.062 s
19/03/14 09:26:31 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:31 INFO scheduler.DAGScheduler: running: Set()
19/03/14 09:26:31 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 17)
19/03/14 09:26:31 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Submitting ResultStage 17 (ShuffledRDD[40] at reduceByKey at CoverageStats.scala:173), which has no missing parents
19/03/14 09:26:31 INFO storage.MemoryStore: Block broadcast_17 stored as values in memory (estimated size 2.5 KB, free 195.1 KB)
19/03/14 09:26:31 INFO storage.MemoryStore: Block broadcast_17_piece0 stored as bytes in memory (estimated size 1554.0 B, free 196.6 KB)
19/03/14 09:26:31 INFO storage.BlockManagerInfo: Added broadcast_17_piece0 in memory on localhost:43161 (size: 1554.0 B, free: 511.0 MB)
19/03/14 09:26:31 INFO spark.SparkContext: Created broadcast 17 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ResultStage 17 (ShuffledRDD[40] at reduceByKey at CoverageStats.scala:173)
19/03/14 09:26:31 INFO scheduler.TaskSchedulerImpl: Adding task set 17.0 with 4 tasks
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 17.0 (TID 60, localhost, partition 1,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 17.0 (TID 61, localhost, partition 2,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 17.0 (TID 62, localhost, partition 0,PROCESS_LOCAL, 1894 bytes)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 17.0 (TID 63, localhost, partition 3,PROCESS_LOCAL, 1894 bytes)
19/03/14 09:26:31 INFO executor.Executor: Running task 1.0 in stage 17.0 (TID 60)
19/03/14 09:26:31 INFO executor.Executor: Running task 3.0 in stage 17.0 (TID 63)
19/03/14 09:26:31 INFO executor.Executor: Running task 2.0 in stage 17.0 (TID 61)
19/03/14 09:26:31 INFO executor.Executor: Running task 0.0 in stage 17.0 (TID 62)
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Getting 0 non-empty blocks out of 4 blocks
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Getting 0 non-empty blocks out of 4 blocks
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 1 ms
19/03/14 09:26:31 INFO executor.Executor: Finished task 3.0 in stage 17.0 (TID 63). 1124 bytes result sent to driver
19/03/14 09:26:31 INFO executor.Executor: Finished task 1.0 in stage 17.0 (TID 60). 1131 bytes result sent to driver
19/03/14 09:26:31 INFO executor.Executor: Finished task 0.0 in stage 17.0 (TID 62). 1124 bytes result sent to driver
19/03/14 09:26:31 INFO executor.Executor: Finished task 2.0 in stage 17.0 (TID 61). 1131 bytes result sent to driver
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 17.0 (TID 63) in 8 ms on localhost (1/4)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 17.0 (TID 60) in 11 ms on localhost (2/4)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 17.0 (TID 62) in 11 ms on localhost (3/4)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 17.0 (TID 61) in 11 ms on localhost (4/4)
19/03/14 09:26:31 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 17.0, whose tasks have all completed, from pool 
19/03/14 09:26:31 INFO scheduler.DAGScheduler: ResultStage 17 (collect at CoverageStats.scala:174) finished in 0.012 s
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Job 6 finished: collect at CoverageStats.scala:174, took 0.275714 s
19/03/14 09:26:31 INFO storage.BlockManagerInfo: Removed broadcast_17_piece0 on localhost:43161 in memory (size: 1554.0 B, free: 511.0 MB)
19/03/14 09:26:31 INFO spark.ContextCleaner: Cleaned accumulator 34
19/03/14 09:26:31 INFO storage.BlockManagerInfo: Removed broadcast_16_piece0 on localhost:43161 in memory (size: 2.2 KB, free: 511.0 MB)
19/03/14 09:26:31 INFO spark.ContextCleaner: Cleaned accumulator 33
19/03/14 09:26:31 INFO storage.BlockManagerInfo: Removed broadcast_15_piece0 on localhost:43161 in memory (size: 2.4 KB, free: 511.0 MB)
19/03/14 09:26:31 INFO spark.ContextCleaner: Cleaned accumulator 19
19/03/14 09:26:31 INFO spark.SparkContext: Starting job: collect at CoverageStats.scala:174
19/03/14 09:26:31 INFO storage.BlockManagerInfo: Removed broadcast_11_piece0 on localhost:43161 in memory (size: 2.5 KB, free: 511.0 MB)
19/03/14 09:26:31 INFO spark.ContextCleaner: Cleaned accumulator 29
19/03/14 09:26:31 INFO spark.MapOutputTrackerMaster: Size of output statuses for shuffle 8 is 159 bytes
19/03/14 09:26:31 INFO storage.BlockManagerInfo: Removed broadcast_10_piece0 on localhost:43161 in memory (size: 2.2 KB, free: 511.0 MB)
19/03/14 09:26:31 INFO spark.ContextCleaner: Cleaned accumulator 28
19/03/14 09:26:31 INFO spark.MapOutputTrackerMaster: Size of output statuses for shuffle 6 is 161 bytes
19/03/14 09:26:31 INFO spark.ContextCleaner: Cleaned shuffle 4
19/03/14 09:26:31 INFO spark.MapOutputTrackerMaster: Size of output statuses for shuffle 5 is 161 bytes
19/03/14 09:26:31 INFO storage.BlockManagerInfo: Removed broadcast_9_piece0 on localhost:43161 in memory (size: 1856.0 B, free: 511.0 MB)
19/03/14 09:26:31 INFO spark.ContextCleaner: Cleaned accumulator 27
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Registering RDD 42 (map at CoverageStats.scala:172)
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Got job 7 (collect at CoverageStats.scala:174) with 4 output partitions
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Final stage: ResultStage 22 (collect at CoverageStats.scala:174)
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 21)
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Missing parents: List(ShuffleMapStage 21)
19/03/14 09:26:31 INFO storage.BlockManagerInfo: Removed broadcast_8_piece0 on localhost:43161 in memory (size: 2.1 KB, free: 511.0 MB)
19/03/14 09:26:31 INFO spark.ContextCleaner: Cleaned accumulator 26
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 21 (MapPartitionsRDD[42] at map at CoverageStats.scala:172), which has no missing parents
19/03/14 09:26:31 INFO spark.ContextCleaner: Cleaned shuffle 3
19/03/14 09:26:31 INFO storage.BlockManagerInfo: Removed broadcast_7_piece0 on localhost:43161 in memory (size: 1186.0 B, free: 511.0 MB)
19/03/14 09:26:31 INFO spark.ContextCleaner: Cleaned accumulator 25
19/03/14 09:26:31 INFO storage.BlockManagerInfo: Removed broadcast_6_piece0 on localhost:43161 in memory (size: 2047.0 B, free: 511.0 MB)
19/03/14 09:26:31 INFO storage.MemoryStore: Block broadcast_18 stored as values in memory (estimated size 4.2 KB, free 154.0 KB)
19/03/14 09:26:31 INFO spark.ContextCleaner: Cleaned accumulator 24
19/03/14 09:26:31 INFO storage.BlockManagerInfo: Removed broadcast_5_piece0 on localhost:43161 in memory (size: 2.1 KB, free: 511.0 MB)
19/03/14 09:26:31 INFO spark.ContextCleaner: Cleaned accumulator 23
19/03/14 09:26:31 INFO storage.BlockManagerInfo: Removed broadcast_4_piece0 on localhost:43161 in memory (size: 2039.0 B, free: 511.0 MB)
19/03/14 09:26:31 INFO spark.ContextCleaner: Cleaned accumulator 22
19/03/14 09:26:31 INFO storage.MemoryStore: Block broadcast_18_piece0 stored as bytes in memory (estimated size 2.2 KB, free 141.2 KB)
19/03/14 09:26:31 INFO storage.BlockManagerInfo: Added broadcast_18_piece0 in memory on localhost:43161 (size: 2.2 KB, free: 511.0 MB)
19/03/14 09:26:31 INFO spark.SparkContext: Created broadcast 18 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:31 INFO storage.BlockManagerInfo: Removed broadcast_2_piece0 on localhost:43161 in memory (size: 2.5 KB, free: 511.0 MB)
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 21 (MapPartitionsRDD[42] at map at CoverageStats.scala:172)
19/03/14 09:26:31 INFO scheduler.TaskSchedulerImpl: Adding task set 21.0 with 4 tasks
19/03/14 09:26:31 INFO spark.ContextCleaner: Cleaned accumulator 21
19/03/14 09:26:31 INFO storage.BlockManagerInfo: Removed broadcast_1_piece0 on localhost:43161 in memory (size: 2.1 KB, free: 511.0 MB)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 21.0 (TID 64, localhost, partition 0,PROCESS_LOCAL, 1956 bytes)
19/03/14 09:26:31 INFO spark.ContextCleaner: Cleaned accumulator 20
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 21.0 (TID 65, localhost, partition 1,PROCESS_LOCAL, 1956 bytes)
19/03/14 09:26:31 INFO spark.ContextCleaner: Cleaned shuffle 0
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 21.0 (TID 66, localhost, partition 2,PROCESS_LOCAL, 1956 bytes)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 21.0 (TID 67, localhost, partition 3,PROCESS_LOCAL, 1956 bytes)
19/03/14 09:26:31 INFO storage.BlockManagerInfo: Removed broadcast_0_piece0 on localhost:43161 in memory (size: 1324.0 B, free: 511.0 MB)
19/03/14 09:26:31 INFO executor.Executor: Running task 2.0 in stage 21.0 (TID 66)
19/03/14 09:26:31 INFO executor.Executor: Running task 1.0 in stage 21.0 (TID 65)
19/03/14 09:26:31 INFO executor.Executor: Running task 0.0 in stage 21.0 (TID 64)
19/03/14 09:26:31 INFO executor.Executor: Running task 3.0 in stage 21.0 (TID 67)
19/03/14 09:26:31 INFO spark.ContextCleaner: Cleaned accumulator 32
19/03/14 09:26:31 INFO storage.BlockManagerInfo: Removed broadcast_14_piece0 on localhost:43161 in memory (size: 2.1 KB, free: 511.0 MB)
19/03/14 09:26:31 INFO storage.BlockManager: Found block rdd_37_0 locally
19/03/14 09:26:31 INFO storage.BlockManager: Found block rdd_37_3 locally
19/03/14 09:26:31 INFO storage.BlockManager: Found block rdd_37_1 locally
19/03/14 09:26:31 INFO storage.BlockManager: Found block rdd_37_2 locally
19/03/14 09:26:31 INFO spark.ContextCleaner: Cleaned accumulator 31
19/03/14 09:26:31 INFO storage.BlockManagerInfo: Removed broadcast_13_piece0 on localhost:43161 in memory (size: 1677.0 B, free: 511.0 MB)
19/03/14 09:26:31 INFO spark.ContextCleaner: Cleaned accumulator 30
19/03/14 09:26:31 INFO spark.ContextCleaner: Cleaned shuffle 7
19/03/14 09:26:31 INFO executor.Executor: Finished task 3.0 in stage 21.0 (TID 67). 2240 bytes result sent to driver
19/03/14 09:26:31 INFO executor.Executor: Finished task 0.0 in stage 21.0 (TID 64). 2240 bytes result sent to driver
19/03/14 09:26:31 INFO executor.Executor: Finished task 2.0 in stage 21.0 (TID 66). 2240 bytes result sent to driver
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 21.0 (TID 67) in 8 ms on localhost (1/4)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 21.0 (TID 64) in 9 ms on localhost (2/4)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 21.0 (TID 66) in 10 ms on localhost (3/4)
19/03/14 09:26:31 INFO executor.Executor: Finished task 1.0 in stage 21.0 (TID 65). 2240 bytes result sent to driver
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 21.0 (TID 65) in 16 ms on localhost (4/4)
19/03/14 09:26:31 INFO scheduler.DAGScheduler: ShuffleMapStage 21 (map at CoverageStats.scala:172) finished in 0.017 s
19/03/14 09:26:31 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 21.0, whose tasks have all completed, from pool 
19/03/14 09:26:31 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:31 INFO scheduler.DAGScheduler: running: Set()
19/03/14 09:26:31 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 22)
19/03/14 09:26:31 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Submitting ResultStage 22 (ShuffledRDD[43] at reduceByKey at CoverageStats.scala:173), which has no missing parents
19/03/14 09:26:31 INFO storage.MemoryStore: Block broadcast_19 stored as values in memory (estimated size 2.5 KB, free 117.0 KB)
19/03/14 09:26:31 INFO storage.MemoryStore: Block broadcast_19_piece0 stored as bytes in memory (estimated size 1554.0 B, free 118.6 KB)
19/03/14 09:26:31 INFO storage.BlockManagerInfo: Added broadcast_19_piece0 in memory on localhost:43161 (size: 1554.0 B, free: 511.0 MB)
19/03/14 09:26:31 INFO spark.SparkContext: Created broadcast 19 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ResultStage 22 (ShuffledRDD[43] at reduceByKey at CoverageStats.scala:173)
19/03/14 09:26:31 INFO scheduler.TaskSchedulerImpl: Adding task set 22.0 with 4 tasks
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 22.0 (TID 68, localhost, partition 1,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 22.0 (TID 69, localhost, partition 0,PROCESS_LOCAL, 1894 bytes)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 22.0 (TID 70, localhost, partition 2,PROCESS_LOCAL, 1894 bytes)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 22.0 (TID 71, localhost, partition 3,PROCESS_LOCAL, 1894 bytes)
19/03/14 09:26:31 INFO executor.Executor: Running task 1.0 in stage 22.0 (TID 68)
19/03/14 09:26:31 INFO executor.Executor: Running task 3.0 in stage 22.0 (TID 71)
19/03/14 09:26:31 INFO executor.Executor: Running task 2.0 in stage 22.0 (TID 70)
19/03/14 09:26:31 INFO executor.Executor: Running task 0.0 in stage 22.0 (TID 69)
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Getting 0 non-empty blocks out of 4 blocks
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Getting 0 non-empty blocks out of 4 blocks
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Getting 0 non-empty blocks out of 4 blocks
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:31 INFO executor.Executor: Finished task 3.0 in stage 22.0 (TID 71). 1124 bytes result sent to driver
19/03/14 09:26:31 INFO executor.Executor: Finished task 2.0 in stage 22.0 (TID 70). 1124 bytes result sent to driver
19/03/14 09:26:31 INFO executor.Executor: Finished task 1.0 in stage 22.0 (TID 68). 1131 bytes result sent to driver
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 22.0 (TID 71) in 8 ms on localhost (1/4)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 22.0 (TID 70) in 8 ms on localhost (2/4)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 22.0 (TID 68) in 10 ms on localhost (3/4)
19/03/14 09:26:31 INFO executor.Executor: Finished task 0.0 in stage 22.0 (TID 69). 1124 bytes result sent to driver
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 22.0 (TID 69) in 11 ms on localhost (4/4)
19/03/14 09:26:31 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 22.0, whose tasks have all completed, from pool 
19/03/14 09:26:31 INFO scheduler.DAGScheduler: ResultStage 22 (collect at CoverageStats.scala:174) finished in 0.012 s
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Job 7 finished: collect at CoverageStats.scala:174, took 0.045748 s
19/03/14 09:26:31 INFO spark.MapOutputTrackerMasterEndpoint: MapOutputTrackerMasterEndpoint stopped!
19/03/14 09:26:31 INFO storage.MemoryStore: MemoryStore cleared
19/03/14 09:26:31 INFO storage.BlockManager: BlockManager stopped
19/03/14 09:26:31 INFO storage.BlockManagerMaster: BlockManagerMaster stopped
19/03/14 09:26:31 INFO scheduler.OutputCommitCoordinator$OutputCommitCoordinatorEndpoint: OutputCommitCoordinator stopped!
19/03/14 09:26:31 INFO remote.RemoteActorRefProvider$RemotingTerminator: Shutting down remote daemon.
19/03/14 09:26:31 INFO remote.RemoteActorRefProvider$RemotingTerminator: Remote daemon shut down; proceeding with flushing remote transports.
19/03/14 09:26:31 INFO spark.SparkContext: Successfully stopped SparkContext
- two transcripts, one fully covered, one not covered at all, one random read
19/03/14 09:26:31 INFO spark.SparkContext: Running Spark version 1.6.1
19/03/14 09:26:31 INFO remote.RemoteActorRefProvider$RemotingTerminator: Remoting shut down.
19/03/14 09:26:31 INFO spark.SecurityManager: Changing view acls to: jenkins
19/03/14 09:26:31 INFO spark.SecurityManager: Changing modify acls to: jenkins
19/03/14 09:26:31 INFO spark.SecurityManager: SecurityManager: authentication disabled; ui acls disabled; users with view permissions: Set(jenkins); users with modify permissions: Set(jenkins)
19/03/14 09:26:31 INFO util.Utils: Successfully started service 'sparkDriver' on port 57659.
19/03/14 09:26:31 INFO slf4j.Slf4jLogger: Slf4jLogger started
19/03/14 09:26:31 INFO Remoting: Starting remoting
19/03/14 09:26:31 INFO Remoting: Remoting started; listening on addresses :[akka.tcp://sparkDriverActorSystem@localhost:57660]
19/03/14 09:26:31 INFO util.Utils: Successfully started service 'sparkDriverActorSystem' on port 57660.
19/03/14 09:26:31 INFO spark.SparkEnv: Registering MapOutputTracker
19/03/14 09:26:31 INFO spark.SparkEnv: Registering BlockManagerMaster
19/03/14 09:26:31 INFO storage.DiskBlockManager: Created local directory at /tmp/blockmgr-f9578d0f-3ecc-4149-92a6-b02a5a746d9e
19/03/14 09:26:31 INFO storage.MemoryStore: MemoryStore started with capacity 491.6 MB
19/03/14 09:26:31 INFO spark.SparkEnv: Registering OutputCommitCoordinator
19/03/14 09:26:31 INFO executor.Executor: Starting executor ID driver on host localhost
19/03/14 09:26:31 INFO util.Utils: Successfully started service 'org.apache.spark.network.netty.NettyBlockTransferService' on port 33474.
19/03/14 09:26:31 INFO netty.NettyBlockTransferService: Server created on 33474
19/03/14 09:26:31 INFO storage.BlockManagerMaster: Trying to register BlockManager
19/03/14 09:26:31 INFO storage.BlockManagerMasterEndpoint: Registering block manager localhost:33474 with 491.6 MB RAM, BlockManagerId(driver, localhost, 33474)
19/03/14 09:26:31 INFO storage.BlockManagerMaster: Registered BlockManager
19/03/14 09:26:31 INFO spark.SparkContext: Starting job: reduce at RNASeqReadCounts.scala:80
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Got job 0 (reduce at RNASeqReadCounts.scala:80) with 4 output partitions
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Final stage: ResultStage 0 (reduce at RNASeqReadCounts.scala:80)
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Parents of final stage: List()
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Missing parents: List()
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Submitting ResultStage 0 (MapPartitionsRDD[2] at map at RNASeqReadCounts.scala:79), which has no missing parents
19/03/14 09:26:31 INFO storage.MemoryStore: Block broadcast_0 stored as values in memory (estimated size 2.0 KB, free 2.0 KB)
19/03/14 09:26:31 INFO storage.MemoryStore: Block broadcast_0_piece0 stored as bytes in memory (estimated size 1324.0 B, free 3.3 KB)
19/03/14 09:26:31 INFO storage.BlockManagerInfo: Added broadcast_0_piece0 in memory on localhost:33474 (size: 1324.0 B, free: 491.6 MB)
19/03/14 09:26:31 INFO spark.SparkContext: Created broadcast 0 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ResultStage 0 (MapPartitionsRDD[2] at map at RNASeqReadCounts.scala:79)
19/03/14 09:26:31 INFO scheduler.TaskSchedulerImpl: Adding task set 0.0 with 4 tasks
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 0.0 (TID 0, localhost, partition 0,PROCESS_LOCAL, 2090 bytes)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 0.0 (TID 1, localhost, partition 1,PROCESS_LOCAL, 2090 bytes)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 0.0 (TID 2, localhost, partition 2,PROCESS_LOCAL, 2090 bytes)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 0.0 (TID 3, localhost, partition 3,PROCESS_LOCAL, 2157 bytes)
19/03/14 09:26:31 INFO executor.Executor: Running task 0.0 in stage 0.0 (TID 0)
19/03/14 09:26:31 INFO executor.Executor: Running task 1.0 in stage 0.0 (TID 1)
19/03/14 09:26:31 INFO executor.Executor: Running task 2.0 in stage 0.0 (TID 2)
19/03/14 09:26:31 INFO executor.Executor: Running task 3.0 in stage 0.0 (TID 3)
19/03/14 09:26:31 INFO spark.CacheManager: Partition rdd_0_0 not found, computing it
19/03/14 09:26:31 INFO storage.MemoryStore: Block rdd_0_0 stored as values in memory (estimated size 352.0 B, free 3.7 KB)
19/03/14 09:26:31 INFO spark.CacheManager: Partition rdd_0_2 not found, computing it
19/03/14 09:26:31 INFO spark.CacheManager: Partition rdd_0_1 not found, computing it
19/03/14 09:26:31 INFO storage.BlockManagerInfo: Added rdd_0_0 in memory on localhost:33474 (size: 352.0 B, free: 491.6 MB)
19/03/14 09:26:31 INFO storage.MemoryStore: Block rdd_0_2 stored as values in memory (estimated size 352.0 B, free 4.0 KB)
19/03/14 09:26:31 INFO spark.CacheManager: Partition rdd_0_3 not found, computing it
19/03/14 09:26:31 INFO storage.BlockManagerInfo: Added rdd_0_2 in memory on localhost:33474 (size: 352.0 B, free: 491.6 MB)
19/03/14 09:26:31 INFO storage.MemoryStore: Block rdd_0_1 stored as values in memory (estimated size 352.0 B, free 4.4 KB)
19/03/14 09:26:31 INFO storage.BlockManagerInfo: Added rdd_0_1 in memory on localhost:33474 (size: 352.0 B, free: 491.6 MB)
19/03/14 09:26:31 INFO storage.MemoryStore: Block rdd_0_3 stored as values in memory (estimated size 632.0 B, free 5.0 KB)
19/03/14 09:26:31 INFO storage.BlockManagerInfo: Added rdd_0_3 in memory on localhost:33474 (size: 632.0 B, free: 491.6 MB)
19/03/14 09:26:31 INFO executor.Executor: Finished task 2.0 in stage 0.0 (TID 2). 1548 bytes result sent to driver
19/03/14 09:26:31 INFO executor.Executor: Finished task 0.0 in stage 0.0 (TID 0). 1548 bytes result sent to driver
19/03/14 09:26:31 INFO executor.Executor: Finished task 1.0 in stage 0.0 (TID 1). 1548 bytes result sent to driver
19/03/14 09:26:31 INFO executor.Executor: Finished task 3.0 in stage 0.0 (TID 3). 1548 bytes result sent to driver
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 0.0 (TID 2) in 16 ms on localhost (1/4)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 0.0 (TID 0) in 20 ms on localhost (2/4)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 0.0 (TID 1) in 18 ms on localhost (3/4)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 0.0 (TID 3) in 16 ms on localhost (4/4)
19/03/14 09:26:31 INFO scheduler.DAGScheduler: ResultStage 0 (reduce at RNASeqReadCounts.scala:80) finished in 0.022 s
19/03/14 09:26:31 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 0.0, whose tasks have all completed, from pool 
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Job 0 finished: reduce at RNASeqReadCounts.scala:80, took 0.032136 s
19/03/14 09:26:31 INFO spark.SparkContext: Starting job: collect at RightOuterJoin.scala:77
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Registering RDD 7 (keyBy at RightOuterJoin.scala:75)
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Got job 1 (collect at RightOuterJoin.scala:77) with 4 output partitions
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Final stage: ResultStage 2 (collect at RightOuterJoin.scala:77)
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 1)
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Missing parents: List(ShuffleMapStage 1)
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 1 (MapPartitionsRDD[7] at keyBy at RightOuterJoin.scala:75), which has no missing parents
19/03/14 09:26:31 INFO storage.MemoryStore: Block broadcast_1 stored as values in memory (estimated size 4.0 KB, free 9.0 KB)
19/03/14 09:26:31 INFO storage.MemoryStore: Block broadcast_1_piece0 stored as bytes in memory (estimated size 2.1 KB, free 11.1 KB)
19/03/14 09:26:31 INFO storage.BlockManagerInfo: Added broadcast_1_piece0 in memory on localhost:33474 (size: 2.1 KB, free: 491.6 MB)
19/03/14 09:26:31 INFO spark.SparkContext: Created broadcast 1 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 1 (MapPartitionsRDD[7] at keyBy at RightOuterJoin.scala:75)
19/03/14 09:26:31 INFO scheduler.TaskSchedulerImpl: Adding task set 1.0 with 4 tasks
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 1.0 (TID 4, localhost, partition 0,PROCESS_LOCAL, 2004 bytes)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 1.0 (TID 5, localhost, partition 1,PROCESS_LOCAL, 2071 bytes)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 1.0 (TID 6, localhost, partition 2,PROCESS_LOCAL, 2004 bytes)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 1.0 (TID 7, localhost, partition 3,PROCESS_LOCAL, 2071 bytes)
19/03/14 09:26:31 INFO executor.Executor: Running task 3.0 in stage 1.0 (TID 7)
19/03/14 09:26:31 INFO executor.Executor: Running task 1.0 in stage 1.0 (TID 5)
19/03/14 09:26:31 INFO executor.Executor: Running task 2.0 in stage 1.0 (TID 6)
19/03/14 09:26:31 INFO executor.Executor: Running task 0.0 in stage 1.0 (TID 4)
19/03/14 09:26:31 INFO spark.CacheManager: Partition rdd_1_2 not found, computing it
19/03/14 09:26:31 INFO spark.CacheManager: Partition rdd_1_0 not found, computing it
19/03/14 09:26:31 INFO spark.CacheManager: Partition rdd_1_3 not found, computing it
19/03/14 09:26:31 INFO spark.CacheManager: Partition rdd_1_1 not found, computing it
19/03/14 09:26:31 INFO storage.MemoryStore: Block rdd_1_2 stored as values in memory (estimated size 16.0 B, free 11.1 KB)
19/03/14 09:26:31 INFO storage.MemoryStore: Block rdd_1_0 stored as values in memory (estimated size 16.0 B, free 11.1 KB)
19/03/14 09:26:31 INFO storage.BlockManagerInfo: Added rdd_1_2 in memory on localhost:33474 (size: 16.0 B, free: 491.6 MB)
19/03/14 09:26:31 INFO storage.BlockManagerInfo: Added rdd_1_0 in memory on localhost:33474 (size: 16.0 B, free: 491.6 MB)
19/03/14 09:26:31 INFO storage.MemoryStore: Block rdd_1_1 stored as values in memory (estimated size 4.7 KB, free 15.9 KB)
19/03/14 09:26:31 INFO storage.MemoryStore: Block rdd_1_3 stored as values in memory (estimated size 4.7 KB, free 20.6 KB)
19/03/14 09:26:31 INFO storage.BlockManagerInfo: Added rdd_1_1 in memory on localhost:33474 (size: 4.7 KB, free: 491.6 MB)
19/03/14 09:26:31 INFO storage.BlockManagerInfo: Added rdd_1_3 in memory on localhost:33474 (size: 4.7 KB, free: 491.6 MB)
19/03/14 09:26:31 INFO executor.Executor: Finished task 0.0 in stage 1.0 (TID 4). 1670 bytes result sent to driver
19/03/14 09:26:31 INFO executor.Executor: Finished task 2.0 in stage 1.0 (TID 6). 1670 bytes result sent to driver
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 1.0 (TID 4) in 15 ms on localhost (1/4)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 1.0 (TID 6) in 11 ms on localhost (2/4)
19/03/14 09:26:31 INFO executor.Executor: Finished task 3.0 in stage 1.0 (TID 7). 1670 bytes result sent to driver
19/03/14 09:26:31 INFO executor.Executor: Finished task 1.0 in stage 1.0 (TID 5). 1670 bytes result sent to driver
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 1.0 (TID 7) in 20 ms on localhost (3/4)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 1.0 (TID 5) in 24 ms on localhost (4/4)
19/03/14 09:26:31 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 1.0, whose tasks have all completed, from pool 
19/03/14 09:26:31 INFO scheduler.DAGScheduler: ShuffleMapStage 1 (keyBy at RightOuterJoin.scala:75) finished in 0.026 s
19/03/14 09:26:31 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:31 INFO scheduler.DAGScheduler: running: Set()
19/03/14 09:26:31 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 2)
19/03/14 09:26:31 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Submitting ResultStage 2 (ShuffledRDD[8] at groupByKey at RightOuterJoin.scala:76), which has no missing parents
19/03/14 09:26:31 INFO storage.MemoryStore: Block broadcast_2 stored as values in memory (estimated size 4.8 KB, free 25.3 KB)
19/03/14 09:26:31 INFO storage.MemoryStore: Block broadcast_2_piece0 stored as bytes in memory (estimated size 2.5 KB, free 27.8 KB)
19/03/14 09:26:31 INFO storage.BlockManagerInfo: Added broadcast_2_piece0 in memory on localhost:33474 (size: 2.5 KB, free: 491.6 MB)
19/03/14 09:26:31 INFO spark.SparkContext: Created broadcast 2 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ResultStage 2 (ShuffledRDD[8] at groupByKey at RightOuterJoin.scala:76)
19/03/14 09:26:31 INFO scheduler.TaskSchedulerImpl: Adding task set 2.0 with 4 tasks
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 2.0 (TID 8, localhost, partition 0,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 2.0 (TID 9, localhost, partition 1,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 2.0 (TID 10, localhost, partition 2,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 2.0 (TID 11, localhost, partition 3,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:31 INFO executor.Executor: Running task 0.0 in stage 2.0 (TID 8)
19/03/14 09:26:31 INFO executor.Executor: Running task 3.0 in stage 2.0 (TID 11)
19/03/14 09:26:31 INFO executor.Executor: Running task 1.0 in stage 2.0 (TID 9)
19/03/14 09:26:31 INFO executor.Executor: Running task 2.0 in stage 2.0 (TID 10)
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Getting 2 non-empty blocks out of 4 blocks
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Getting 2 non-empty blocks out of 4 blocks
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Getting 2 non-empty blocks out of 4 blocks
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Getting 2 non-empty blocks out of 4 blocks
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:31 INFO executor.Executor: Finished task 3.0 in stage 2.0 (TID 11). 1124 bytes result sent to driver
19/03/14 09:26:31 INFO executor.Executor: Finished task 1.0 in stage 2.0 (TID 9). 1124 bytes result sent to driver
19/03/14 09:26:31 INFO executor.Executor: Finished task 0.0 in stage 2.0 (TID 8). 1124 bytes result sent to driver
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 2.0 (TID 11) in 8 ms on localhost (1/4)
19/03/14 09:26:31 INFO executor.Executor: Finished task 2.0 in stage 2.0 (TID 10). 1239 bytes result sent to driver
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 2.0 (TID 8) in 9 ms on localhost (2/4)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 2.0 (TID 9) in 8 ms on localhost (3/4)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 2.0 (TID 10) in 11 ms on localhost (4/4)
19/03/14 09:26:31 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 2.0, whose tasks have all completed, from pool 
19/03/14 09:26:31 INFO scheduler.DAGScheduler: ResultStage 2 (collect at RightOuterJoin.scala:77) finished in 0.013 s
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Job 1 finished: collect at RightOuterJoin.scala:77, took 0.053947 s
19/03/14 09:26:31 INFO storage.MemoryStore: Block broadcast_3 stored as values in memory (estimated size 232.0 B, free 28.0 KB)
19/03/14 09:26:31 INFO storage.MemoryStore: Block broadcast_3_piece0 stored as bytes in memory (estimated size 128.0 B, free 28.1 KB)
19/03/14 09:26:31 INFO storage.BlockManagerInfo: Added broadcast_3_piece0 in memory on localhost:33474 (size: 128.0 B, free: 491.6 MB)
19/03/14 09:26:31 INFO spark.SparkContext: Created broadcast 3 from broadcast at RightOuterJoin.scala:86
19/03/14 09:26:31 INFO spark.SparkContext: Starting job: reduce at RNASeqAlignmentCounts.scala:72
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Registering RDD 9 (map at RightOuterJoin.scala:90)
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Registering RDD 10 (flatMap at RightOuterJoin.scala:94)
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Got job 2 (reduce at RNASeqAlignmentCounts.scala:72) with 4 output partitions
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Final stage: ResultStage 5 (reduce at RNASeqAlignmentCounts.scala:72)
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 3, ShuffleMapStage 4)
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Missing parents: List(ShuffleMapStage 3, ShuffleMapStage 4)
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 3 (MapPartitionsRDD[9] at map at RightOuterJoin.scala:90), which has no missing parents
19/03/14 09:26:31 INFO storage.MemoryStore: Block broadcast_4 stored as values in memory (estimated size 3.4 KB, free 31.5 KB)
19/03/14 09:26:31 INFO storage.MemoryStore: Block broadcast_4_piece0 stored as bytes in memory (estimated size 2039.0 B, free 33.5 KB)
19/03/14 09:26:31 INFO storage.BlockManagerInfo: Added broadcast_4_piece0 in memory on localhost:33474 (size: 2039.0 B, free: 491.6 MB)
19/03/14 09:26:31 INFO spark.SparkContext: Created broadcast 4 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 3 (MapPartitionsRDD[9] at map at RightOuterJoin.scala:90)
19/03/14 09:26:31 INFO scheduler.TaskSchedulerImpl: Adding task set 3.0 with 4 tasks
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 4 (MapPartitionsRDD[10] at flatMap at RightOuterJoin.scala:94), which has no missing parents
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 3.0 (TID 12, localhost, partition 0,PROCESS_LOCAL, 2004 bytes)
19/03/14 09:26:31 INFO storage.MemoryStore: Block broadcast_5 stored as values in memory (estimated size 3.7 KB, free 37.2 KB)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 3.0 (TID 13, localhost, partition 1,PROCESS_LOCAL, 2071 bytes)
19/03/14 09:26:31 INFO storage.MemoryStore: Block broadcast_5_piece0 stored as bytes in memory (estimated size 2.1 KB, free 39.3 KB)
19/03/14 09:26:31 INFO storage.BlockManagerInfo: Added broadcast_5_piece0 in memory on localhost:33474 (size: 2.1 KB, free: 491.6 MB)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 3.0 (TID 14, localhost, partition 2,PROCESS_LOCAL, 2004 bytes)
19/03/14 09:26:31 INFO spark.SparkContext: Created broadcast 5 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 4 (MapPartitionsRDD[10] at flatMap at RightOuterJoin.scala:94)
19/03/14 09:26:31 INFO scheduler.TaskSchedulerImpl: Adding task set 4.0 with 4 tasks
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 3.0 (TID 15, localhost, partition 3,PROCESS_LOCAL, 2071 bytes)
19/03/14 09:26:31 INFO executor.Executor: Running task 0.0 in stage 3.0 (TID 12)
19/03/14 09:26:31 INFO executor.Executor: Running task 2.0 in stage 3.0 (TID 14)
19/03/14 09:26:31 INFO executor.Executor: Running task 3.0 in stage 3.0 (TID 15)
19/03/14 09:26:31 INFO executor.Executor: Running task 1.0 in stage 3.0 (TID 13)
19/03/14 09:26:31 INFO storage.BlockManager: Found block rdd_1_2 locally
19/03/14 09:26:31 INFO storage.BlockManager: Found block rdd_1_1 locally
19/03/14 09:26:31 INFO storage.BlockManager: Found block rdd_1_0 locally
19/03/14 09:26:31 INFO storage.BlockManager: Found block rdd_1_3 locally
19/03/14 09:26:31 INFO executor.Executor: Finished task 2.0 in stage 3.0 (TID 14). 2240 bytes result sent to driver
19/03/14 09:26:31 INFO executor.Executor: Finished task 0.0 in stage 3.0 (TID 12). 2240 bytes result sent to driver
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 4.0 (TID 16, localhost, partition 0,PROCESS_LOCAL, 2079 bytes)
19/03/14 09:26:31 INFO executor.Executor: Running task 0.0 in stage 4.0 (TID 16)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 4.0 (TID 17, localhost, partition 1,PROCESS_LOCAL, 2079 bytes)
19/03/14 09:26:31 INFO executor.Executor: Running task 1.0 in stage 4.0 (TID 17)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 3.0 (TID 14) in 12 ms on localhost (1/4)
19/03/14 09:26:31 INFO storage.BlockManager: Found block rdd_0_0 locally
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 3.0 (TID 12) in 17 ms on localhost (2/4)
19/03/14 09:26:31 INFO executor.Executor: Finished task 3.0 in stage 3.0 (TID 15). 2240 bytes result sent to driver
19/03/14 09:26:31 INFO executor.Executor: Finished task 1.0 in stage 3.0 (TID 13). 2240 bytes result sent to driver
19/03/14 09:26:31 INFO storage.BlockManager: Found block rdd_0_1 locally
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 4.0 (TID 18, localhost, partition 2,PROCESS_LOCAL, 2079 bytes)
19/03/14 09:26:31 INFO executor.Executor: Running task 2.0 in stage 4.0 (TID 18)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 4.0 (TID 19, localhost, partition 3,PROCESS_LOCAL, 2146 bytes)
19/03/14 09:26:31 INFO executor.Executor: Running task 3.0 in stage 4.0 (TID 19)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 3.0 (TID 15) in 17 ms on localhost (3/4)
19/03/14 09:26:31 INFO storage.BlockManager: Found block rdd_0_2 locally
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 3.0 (TID 13) in 21 ms on localhost (4/4)
19/03/14 09:26:31 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 3.0, whose tasks have all completed, from pool 
19/03/14 09:26:31 INFO scheduler.DAGScheduler: ShuffleMapStage 3 (map at RightOuterJoin.scala:90) finished in 0.023 s
19/03/14 09:26:31 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:31 INFO scheduler.DAGScheduler: running: Set(ShuffleMapStage 4)
19/03/14 09:26:31 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 5)
19/03/14 09:26:31 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:31 INFO executor.Executor: Finished task 0.0 in stage 4.0 (TID 16). 2240 bytes result sent to driver
19/03/14 09:26:31 INFO storage.BlockManager: Found block rdd_0_3 locally
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 4.0 (TID 16) in 15 ms on localhost (1/4)
19/03/14 09:26:31 INFO executor.Executor: Finished task 1.0 in stage 4.0 (TID 17). 2240 bytes result sent to driver
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 4.0 (TID 17) in 16 ms on localhost (2/4)
19/03/14 09:26:31 INFO executor.Executor: Finished task 2.0 in stage 4.0 (TID 18). 2240 bytes result sent to driver
19/03/14 09:26:31 INFO executor.Executor: Finished task 3.0 in stage 4.0 (TID 19). 2240 bytes result sent to driver
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 4.0 (TID 18) in 15 ms on localhost (3/4)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 4.0 (TID 19) in 14 ms on localhost (4/4)
19/03/14 09:26:31 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 4.0, whose tasks have all completed, from pool 
19/03/14 09:26:31 INFO scheduler.DAGScheduler: ShuffleMapStage 4 (flatMap at RightOuterJoin.scala:94) finished in 0.028 s
19/03/14 09:26:31 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:31 INFO scheduler.DAGScheduler: running: Set()
19/03/14 09:26:31 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 5)
19/03/14 09:26:31 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Submitting ResultStage 5 (MapPartitionsRDD[16] at flatMap at RNASeqAlignmentCounts.scala:71), which has no missing parents
19/03/14 09:26:31 INFO storage.MemoryStore: Block broadcast_6 stored as values in memory (estimated size 3.8 KB, free 43.1 KB)
19/03/14 09:26:31 INFO storage.MemoryStore: Block broadcast_6_piece0 stored as bytes in memory (estimated size 2047.0 B, free 45.1 KB)
19/03/14 09:26:31 INFO storage.BlockManagerInfo: Added broadcast_6_piece0 in memory on localhost:33474 (size: 2047.0 B, free: 491.6 MB)
19/03/14 09:26:31 INFO spark.SparkContext: Created broadcast 6 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ResultStage 5 (MapPartitionsRDD[16] at flatMap at RNASeqAlignmentCounts.scala:71)
19/03/14 09:26:31 INFO scheduler.TaskSchedulerImpl: Adding task set 5.0 with 4 tasks
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 5.0 (TID 20, localhost, partition 0,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 5.0 (TID 21, localhost, partition 1,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 5.0 (TID 22, localhost, partition 2,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 5.0 (TID 23, localhost, partition 3,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:31 INFO executor.Executor: Running task 3.0 in stage 5.0 (TID 23)
19/03/14 09:26:31 INFO executor.Executor: Running task 2.0 in stage 5.0 (TID 22)
19/03/14 09:26:31 INFO executor.Executor: Running task 1.0 in stage 5.0 (TID 21)
19/03/14 09:26:31 INFO executor.Executor: Running task 0.0 in stage 5.0 (TID 20)
19/03/14 09:26:31 INFO spark.CacheManager: Partition rdd_14_0 not found, computing it
19/03/14 09:26:31 INFO spark.CacheManager: Partition rdd_14_3 not found, computing it
19/03/14 09:26:31 INFO spark.CacheManager: Partition rdd_14_1 not found, computing it
19/03/14 09:26:31 INFO spark.CacheManager: Partition rdd_14_2 not found, computing it
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Getting 2 non-empty blocks out of 4 blocks
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Getting 2 non-empty blocks out of 4 blocks
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Getting 2 non-empty blocks out of 4 blocks
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Getting 2 non-empty blocks out of 4 blocks
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Getting 4 non-empty blocks out of 4 blocks
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Getting 4 non-empty blocks out of 4 blocks
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Getting 4 non-empty blocks out of 4 blocks
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Getting 4 non-empty blocks out of 4 blocks
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 1 ms
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:31 INFO storage.MemoryStore: Block rdd_14_2 stored as values in memory (estimated size 16.0 B, free 45.1 KB)
19/03/14 09:26:31 INFO storage.BlockManagerInfo: Added rdd_14_2 in memory on localhost:33474 (size: 16.0 B, free: 491.6 MB)
19/03/14 09:26:31 INFO storage.MemoryStore: Block rdd_14_0 stored as values in memory (estimated size 392.0 B, free 45.5 KB)
19/03/14 09:26:31 INFO storage.BlockManagerInfo: Added rdd_14_0 in memory on localhost:33474 (size: 392.0 B, free: 491.6 MB)
19/03/14 09:26:31 INFO storage.MemoryStore: Block rdd_14_3 stored as values in memory (estimated size 16.0 B, free 45.5 KB)
19/03/14 09:26:31 INFO storage.BlockManagerInfo: Added rdd_14_3 in memory on localhost:33474 (size: 16.0 B, free: 491.6 MB)
19/03/14 09:26:31 INFO executor.Executor: Finished task 2.0 in stage 5.0 (TID 22). 1704 bytes result sent to driver
19/03/14 09:26:31 INFO executor.Executor: Finished task 0.0 in stage 5.0 (TID 20). 1767 bytes result sent to driver
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 5.0 (TID 22) in 12 ms on localhost (1/4)
19/03/14 09:26:31 INFO executor.Executor: Finished task 3.0 in stage 5.0 (TID 23). 1704 bytes result sent to driver
19/03/14 09:26:31 INFO storage.MemoryStore: Block rdd_14_1 stored as values in memory (estimated size 6.0 KB, free 51.5 KB)
19/03/14 09:26:31 INFO storage.BlockManagerInfo: Added rdd_14_1 in memory on localhost:33474 (size: 6.0 KB, free: 491.6 MB)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 5.0 (TID 23) in 13 ms on localhost (2/4)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 5.0 (TID 20) in 13 ms on localhost (3/4)
19/03/14 09:26:31 INFO executor.Executor: Finished task 1.0 in stage 5.0 (TID 21). 1767 bytes result sent to driver
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 5.0 (TID 21) in 16 ms on localhost (4/4)
19/03/14 09:26:31 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 5.0, whose tasks have all completed, from pool 
19/03/14 09:26:31 INFO scheduler.DAGScheduler: ResultStage 5 (reduce at RNASeqAlignmentCounts.scala:72) finished in 0.017 s
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Job 2 finished: reduce at RNASeqAlignmentCounts.scala:72, took 0.065941 s
19/03/14 09:26:31 INFO spark.SparkContext: Starting job: count at TranscriptCounts.scala:43
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Got job 3 (count at TranscriptCounts.scala:43) with 4 output partitions
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Final stage: ResultStage 6 (count at TranscriptCounts.scala:43)
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Parents of final stage: List()
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Missing parents: List()
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Submitting ResultStage 6 (MapPartitionsRDD[17] at filter at TranscriptCounts.scala:42), which has no missing parents
19/03/14 09:26:31 INFO storage.MemoryStore: Block broadcast_7 stored as values in memory (estimated size 1808.0 B, free 53.3 KB)
19/03/14 09:26:31 INFO storage.MemoryStore: Block broadcast_7_piece0 stored as bytes in memory (estimated size 1186.0 B, free 54.5 KB)
19/03/14 09:26:31 INFO storage.BlockManagerInfo: Added broadcast_7_piece0 in memory on localhost:33474 (size: 1186.0 B, free: 491.6 MB)
19/03/14 09:26:31 INFO spark.SparkContext: Created broadcast 7 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ResultStage 6 (MapPartitionsRDD[17] at filter at TranscriptCounts.scala:42)
19/03/14 09:26:31 INFO scheduler.TaskSchedulerImpl: Adding task set 6.0 with 4 tasks
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 6.0 (TID 24, localhost, partition 0,PROCESS_LOCAL, 2015 bytes)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 6.0 (TID 25, localhost, partition 1,PROCESS_LOCAL, 2082 bytes)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 6.0 (TID 26, localhost, partition 2,PROCESS_LOCAL, 2015 bytes)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 6.0 (TID 27, localhost, partition 3,PROCESS_LOCAL, 2082 bytes)
19/03/14 09:26:31 INFO executor.Executor: Running task 1.0 in stage 6.0 (TID 25)
19/03/14 09:26:31 INFO executor.Executor: Running task 0.0 in stage 6.0 (TID 24)
19/03/14 09:26:31 INFO executor.Executor: Running task 3.0 in stage 6.0 (TID 27)
19/03/14 09:26:31 INFO executor.Executor: Running task 2.0 in stage 6.0 (TID 26)
19/03/14 09:26:31 INFO storage.BlockManager: Found block rdd_1_2 locally
19/03/14 09:26:31 INFO storage.BlockManager: Found block rdd_1_1 locally
19/03/14 09:26:31 INFO storage.BlockManager: Found block rdd_1_0 locally
19/03/14 09:26:31 INFO storage.BlockManager: Found block rdd_1_3 locally
19/03/14 09:26:31 INFO executor.Executor: Finished task 2.0 in stage 6.0 (TID 26). 2057 bytes result sent to driver
19/03/14 09:26:31 INFO executor.Executor: Finished task 1.0 in stage 6.0 (TID 25). 2057 bytes result sent to driver
19/03/14 09:26:31 INFO executor.Executor: Finished task 0.0 in stage 6.0 (TID 24). 2057 bytes result sent to driver
19/03/14 09:26:31 INFO executor.Executor: Finished task 3.0 in stage 6.0 (TID 27). 2057 bytes result sent to driver
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 6.0 (TID 26) in 9 ms on localhost (1/4)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 6.0 (TID 25) in 10 ms on localhost (2/4)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 6.0 (TID 24) in 12 ms on localhost (3/4)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 6.0 (TID 27) in 7 ms on localhost (4/4)
19/03/14 09:26:31 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 6.0, whose tasks have all completed, from pool 
19/03/14 09:26:31 INFO scheduler.DAGScheduler: ResultStage 6 (count at TranscriptCounts.scala:43) finished in 0.012 s
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Job 3 finished: count at TranscriptCounts.scala:43, took 0.018176 s
19/03/14 09:26:31 INFO spark.SparkContext: Starting job: count at TranscriptCounts.scala:51
19/03/14 09:26:31 INFO spark.MapOutputTrackerMaster: Size of output statuses for shuffle 2 is 158 bytes
19/03/14 09:26:31 INFO spark.MapOutputTrackerMaster: Size of output statuses for shuffle 1 is 165 bytes
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Registering RDD 19 (distinct at TranscriptCounts.scala:50)
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Got job 4 (count at TranscriptCounts.scala:51) with 4 output partitions
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Final stage: ResultStage 10 (count at TranscriptCounts.scala:51)
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 9)
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Missing parents: List(ShuffleMapStage 9)
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 9 (MapPartitionsRDD[19] at distinct at TranscriptCounts.scala:50), which has no missing parents
19/03/14 09:26:31 INFO storage.MemoryStore: Block broadcast_8 stored as values in memory (estimated size 4.0 KB, free 58.4 KB)
19/03/14 09:26:31 INFO storage.MemoryStore: Block broadcast_8_piece0 stored as bytes in memory (estimated size 2.1 KB, free 60.5 KB)
19/03/14 09:26:31 INFO storage.BlockManagerInfo: Added broadcast_8_piece0 in memory on localhost:33474 (size: 2.1 KB, free: 491.6 MB)
19/03/14 09:26:31 INFO spark.SparkContext: Created broadcast 8 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 9 (MapPartitionsRDD[19] at distinct at TranscriptCounts.scala:50)
19/03/14 09:26:31 INFO scheduler.TaskSchedulerImpl: Adding task set 9.0 with 4 tasks
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 9.0 (TID 28, localhost, partition 0,PROCESS_LOCAL, 1956 bytes)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 9.0 (TID 29, localhost, partition 1,PROCESS_LOCAL, 1956 bytes)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 9.0 (TID 30, localhost, partition 2,PROCESS_LOCAL, 1956 bytes)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 9.0 (TID 31, localhost, partition 3,PROCESS_LOCAL, 1956 bytes)
19/03/14 09:26:31 INFO executor.Executor: Running task 2.0 in stage 9.0 (TID 30)
19/03/14 09:26:31 INFO executor.Executor: Running task 0.0 in stage 9.0 (TID 28)
19/03/14 09:26:31 INFO executor.Executor: Running task 1.0 in stage 9.0 (TID 29)
19/03/14 09:26:31 INFO executor.Executor: Running task 3.0 in stage 9.0 (TID 31)
19/03/14 09:26:31 INFO storage.BlockManager: Found block rdd_14_3 locally
19/03/14 09:26:31 INFO storage.BlockManager: Found block rdd_14_2 locally
19/03/14 09:26:31 INFO storage.BlockManager: Found block rdd_14_1 locally
19/03/14 09:26:31 INFO storage.BlockManager: Found block rdd_14_0 locally
19/03/14 09:26:31 INFO executor.Executor: Finished task 3.0 in stage 9.0 (TID 31). 2240 bytes result sent to driver
19/03/14 09:26:31 INFO executor.Executor: Finished task 2.0 in stage 9.0 (TID 30). 2240 bytes result sent to driver
19/03/14 09:26:31 INFO executor.Executor: Finished task 0.0 in stage 9.0 (TID 28). 2240 bytes result sent to driver
19/03/14 09:26:31 INFO executor.Executor: Finished task 1.0 in stage 9.0 (TID 29). 2240 bytes result sent to driver
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 9.0 (TID 31) in 7 ms on localhost (1/4)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 9.0 (TID 30) in 8 ms on localhost (2/4)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 9.0 (TID 28) in 9 ms on localhost (3/4)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 9.0 (TID 29) in 8 ms on localhost (4/4)
19/03/14 09:26:31 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 9.0, whose tasks have all completed, from pool 
19/03/14 09:26:31 INFO scheduler.DAGScheduler: ShuffleMapStage 9 (distinct at TranscriptCounts.scala:50) finished in 0.009 s
19/03/14 09:26:31 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:31 INFO scheduler.DAGScheduler: running: Set()
19/03/14 09:26:31 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 10)
19/03/14 09:26:31 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Submitting ResultStage 10 (MapPartitionsRDD[21] at distinct at TranscriptCounts.scala:50), which has no missing parents
19/03/14 09:26:31 INFO storage.MemoryStore: Block broadcast_9 stored as values in memory (estimated size 3.1 KB, free 63.6 KB)
19/03/14 09:26:31 INFO storage.MemoryStore: Block broadcast_9_piece0 stored as bytes in memory (estimated size 1856.0 B, free 65.5 KB)
19/03/14 09:26:31 INFO storage.BlockManagerInfo: Added broadcast_9_piece0 in memory on localhost:33474 (size: 1856.0 B, free: 491.6 MB)
19/03/14 09:26:31 INFO spark.SparkContext: Created broadcast 9 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ResultStage 10 (MapPartitionsRDD[21] at distinct at TranscriptCounts.scala:50)
19/03/14 09:26:31 INFO scheduler.TaskSchedulerImpl: Adding task set 10.0 with 4 tasks
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 10.0 (TID 32, localhost, partition 1,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 10.0 (TID 33, localhost, partition 0,PROCESS_LOCAL, 1894 bytes)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 10.0 (TID 34, localhost, partition 2,PROCESS_LOCAL, 1894 bytes)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 10.0 (TID 35, localhost, partition 3,PROCESS_LOCAL, 1894 bytes)
19/03/14 09:26:31 INFO executor.Executor: Running task 0.0 in stage 10.0 (TID 33)
19/03/14 09:26:31 INFO executor.Executor: Running task 1.0 in stage 10.0 (TID 32)
19/03/14 09:26:31 INFO executor.Executor: Running task 2.0 in stage 10.0 (TID 34)
19/03/14 09:26:31 INFO executor.Executor: Running task 3.0 in stage 10.0 (TID 35)
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Getting 0 non-empty blocks out of 4 blocks
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Getting 0 non-empty blocks out of 4 blocks
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 1 ms
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 1 ms
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Getting 0 non-empty blocks out of 4 blocks
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:31 INFO executor.Executor: Finished task 0.0 in stage 10.0 (TID 33). 1123 bytes result sent to driver
19/03/14 09:26:31 INFO executor.Executor: Finished task 3.0 in stage 10.0 (TID 35). 1123 bytes result sent to driver
19/03/14 09:26:31 INFO executor.Executor: Finished task 1.0 in stage 10.0 (TID 32). 1123 bytes result sent to driver
19/03/14 09:26:31 INFO executor.Executor: Finished task 2.0 in stage 10.0 (TID 34). 1123 bytes result sent to driver
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 10.0 (TID 33) in 8 ms on localhost (1/4)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 10.0 (TID 35) in 8 ms on localhost (2/4)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 10.0 (TID 32) in 9 ms on localhost (3/4)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 10.0 (TID 34) in 8 ms on localhost (4/4)
19/03/14 09:26:31 INFO scheduler.DAGScheduler: ResultStage 10 (count at TranscriptCounts.scala:51) finished in 0.009 s
19/03/14 09:26:31 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 10.0, whose tasks have all completed, from pool 
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Job 4 finished: count at TranscriptCounts.scala:51, took 0.034969 s
19/03/14 09:26:31 INFO rdd.ParallelCollectionRDD: Removing RDD 0 from persistence list
19/03/14 09:26:31 INFO storage.BlockManager: Removing RDD 0
19/03/14 09:26:31 INFO spark.SparkContext: Starting job: collect at BroadcastRegionJoin.scala:100
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Registering RDD 28 (keyBy at BroadcastRegionJoin.scala:98)
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Got job 5 (collect at BroadcastRegionJoin.scala:100) with 4 output partitions
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Final stage: ResultStage 12 (collect at BroadcastRegionJoin.scala:100)
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 11)
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Missing parents: List(ShuffleMapStage 11)
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 11 (MapPartitionsRDD[28] at keyBy at BroadcastRegionJoin.scala:98), which has no missing parents
19/03/14 09:26:31 INFO storage.MemoryStore: Block broadcast_10 stored as values in memory (estimated size 4.2 KB, free 68.0 KB)
19/03/14 09:26:31 INFO storage.MemoryStore: Block broadcast_10_piece0 stored as bytes in memory (estimated size 2.2 KB, free 70.2 KB)
19/03/14 09:26:31 INFO storage.BlockManagerInfo: Added broadcast_10_piece0 in memory on localhost:33474 (size: 2.2 KB, free: 491.6 MB)
19/03/14 09:26:31 INFO spark.SparkContext: Created broadcast 10 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 11 (MapPartitionsRDD[28] at keyBy at BroadcastRegionJoin.scala:98)
19/03/14 09:26:31 INFO scheduler.TaskSchedulerImpl: Adding task set 11.0 with 4 tasks
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 11.0 (TID 36, localhost, partition 0,PROCESS_LOCAL, 2004 bytes)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 11.0 (TID 37, localhost, partition 1,PROCESS_LOCAL, 2071 bytes)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 11.0 (TID 38, localhost, partition 2,PROCESS_LOCAL, 2004 bytes)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 11.0 (TID 39, localhost, partition 3,PROCESS_LOCAL, 2071 bytes)
19/03/14 09:26:31 INFO executor.Executor: Running task 0.0 in stage 11.0 (TID 36)
19/03/14 09:26:31 INFO executor.Executor: Running task 3.0 in stage 11.0 (TID 39)
19/03/14 09:26:31 INFO executor.Executor: Running task 2.0 in stage 11.0 (TID 38)
19/03/14 09:26:31 INFO executor.Executor: Running task 1.0 in stage 11.0 (TID 37)
19/03/14 09:26:31 INFO storage.BlockManager: Found block rdd_1_2 locally
19/03/14 09:26:31 INFO storage.BlockManager: Found block rdd_1_0 locally
19/03/14 09:26:31 INFO storage.BlockManager: Found block rdd_1_3 locally
19/03/14 09:26:31 INFO storage.BlockManager: Found block rdd_1_1 locally
19/03/14 09:26:31 INFO executor.Executor: Finished task 0.0 in stage 11.0 (TID 36). 2240 bytes result sent to driver
19/03/14 09:26:31 INFO executor.Executor: Finished task 2.0 in stage 11.0 (TID 38). 2240 bytes result sent to driver
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 11.0 (TID 36) in 13 ms on localhost (1/4)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 11.0 (TID 38) in 10 ms on localhost (2/4)
19/03/14 09:26:31 INFO executor.Executor: Finished task 3.0 in stage 11.0 (TID 39). 2240 bytes result sent to driver
19/03/14 09:26:31 INFO executor.Executor: Finished task 1.0 in stage 11.0 (TID 37). 2240 bytes result sent to driver
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 11.0 (TID 39) in 15 ms on localhost (3/4)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 11.0 (TID 37) in 18 ms on localhost (4/4)
19/03/14 09:26:31 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 11.0, whose tasks have all completed, from pool 
19/03/14 09:26:31 INFO scheduler.DAGScheduler: ShuffleMapStage 11 (keyBy at BroadcastRegionJoin.scala:98) finished in 0.021 s
19/03/14 09:26:31 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:31 INFO scheduler.DAGScheduler: running: Set()
19/03/14 09:26:31 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 12)
19/03/14 09:26:31 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Submitting ResultStage 12 (ShuffledRDD[29] at groupByKey at BroadcastRegionJoin.scala:99), which has no missing parents
19/03/14 09:26:31 INFO storage.MemoryStore: Block broadcast_11 stored as values in memory (estimated size 5.0 KB, free 75.2 KB)
19/03/14 09:26:31 INFO storage.MemoryStore: Block broadcast_11_piece0 stored as bytes in memory (estimated size 2.5 KB, free 77.7 KB)
19/03/14 09:26:31 INFO storage.BlockManagerInfo: Added broadcast_11_piece0 in memory on localhost:33474 (size: 2.5 KB, free: 491.6 MB)
19/03/14 09:26:31 INFO spark.SparkContext: Created broadcast 11 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ResultStage 12 (ShuffledRDD[29] at groupByKey at BroadcastRegionJoin.scala:99)
19/03/14 09:26:31 INFO scheduler.TaskSchedulerImpl: Adding task set 12.0 with 4 tasks
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 12.0 (TID 40, localhost, partition 0,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 12.0 (TID 41, localhost, partition 1,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 12.0 (TID 42, localhost, partition 2,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 12.0 (TID 43, localhost, partition 3,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:31 INFO executor.Executor: Running task 3.0 in stage 12.0 (TID 43)
19/03/14 09:26:31 INFO executor.Executor: Running task 0.0 in stage 12.0 (TID 40)
19/03/14 09:26:31 INFO executor.Executor: Running task 1.0 in stage 12.0 (TID 41)
19/03/14 09:26:31 INFO executor.Executor: Running task 2.0 in stage 12.0 (TID 42)
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Getting 2 non-empty blocks out of 4 blocks
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Getting 2 non-empty blocks out of 4 blocks
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Getting 2 non-empty blocks out of 4 blocks
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Getting 2 non-empty blocks out of 4 blocks
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 1 ms
19/03/14 09:26:31 INFO executor.Executor: Finished task 3.0 in stage 12.0 (TID 43). 1124 bytes result sent to driver
19/03/14 09:26:31 INFO executor.Executor: Finished task 0.0 in stage 12.0 (TID 40). 1124 bytes result sent to driver
19/03/14 09:26:31 INFO executor.Executor: Finished task 1.0 in stage 12.0 (TID 41). 1124 bytes result sent to driver
19/03/14 09:26:31 INFO executor.Executor: Finished task 2.0 in stage 12.0 (TID 42). 1239 bytes result sent to driver
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 12.0 (TID 43) in 7 ms on localhost (1/4)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 12.0 (TID 40) in 8 ms on localhost (2/4)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 12.0 (TID 41) in 9 ms on localhost (3/4)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 12.0 (TID 42) in 11 ms on localhost (4/4)
19/03/14 09:26:31 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 12.0, whose tasks have all completed, from pool 
19/03/14 09:26:31 INFO scheduler.DAGScheduler: ResultStage 12 (collect at BroadcastRegionJoin.scala:100) finished in 0.012 s
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Job 5 finished: collect at BroadcastRegionJoin.scala:100, took 0.046894 s
19/03/14 09:26:31 INFO storage.MemoryStore: Block broadcast_12 stored as values in memory (estimated size 232.0 B, free 77.9 KB)
19/03/14 09:26:31 INFO storage.MemoryStore: Block broadcast_12_piece0 stored as bytes in memory (estimated size 128.0 B, free 78.0 KB)
19/03/14 09:26:31 INFO storage.BlockManagerInfo: Added broadcast_12_piece0 in memory on localhost:33474 (size: 128.0 B, free: 491.6 MB)
19/03/14 09:26:31 INFO spark.SparkContext: Created broadcast 12 from broadcast at BroadcastRegionJoin.scala:109
19/03/14 09:26:31 INFO spark.SparkContext: Starting job: collect at CoverageStats.scala:174
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Registering RDD 22 (flatMap at ReadCoverage.scala:59)
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Registering RDD 32 (flatMap at BroadcastRegionJoin.scala:118)
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Registering RDD 30 (map at BroadcastRegionJoin.scala:113)
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Registering RDD 39 (map at CoverageStats.scala:172)
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Got job 6 (collect at CoverageStats.scala:174) with 4 output partitions
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Final stage: ResultStage 17 (collect at CoverageStats.scala:174)
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 16)
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Missing parents: List(ShuffleMapStage 16)
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 13 (MapPartitionsRDD[22] at flatMap at ReadCoverage.scala:59), which has no missing parents
19/03/14 09:26:31 INFO storage.MemoryStore: Block broadcast_13 stored as values in memory (estimated size 2.7 KB, free 80.8 KB)
19/03/14 09:26:31 INFO storage.MemoryStore: Block broadcast_13_piece0 stored as bytes in memory (estimated size 1677.0 B, free 82.4 KB)
19/03/14 09:26:31 INFO storage.BlockManagerInfo: Added broadcast_13_piece0 in memory on localhost:33474 (size: 1677.0 B, free: 491.6 MB)
19/03/14 09:26:31 INFO spark.SparkContext: Created broadcast 13 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 13 (MapPartitionsRDD[22] at flatMap at ReadCoverage.scala:59)
19/03/14 09:26:31 INFO scheduler.TaskSchedulerImpl: Adding task set 13.0 with 4 tasks
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 15 (MapPartitionsRDD[30] at map at BroadcastRegionJoin.scala:113), which has no missing parents
19/03/14 09:26:31 INFO storage.MemoryStore: Block broadcast_14 stored as values in memory (estimated size 3.6 KB, free 86.0 KB)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 13.0 (TID 44, localhost, partition 0,PROCESS_LOCAL, 2079 bytes)
19/03/14 09:26:31 INFO storage.MemoryStore: Block broadcast_14_piece0 stored as bytes in memory (estimated size 2.1 KB, free 88.1 KB)
19/03/14 09:26:31 INFO storage.BlockManagerInfo: Added broadcast_14_piece0 in memory on localhost:33474 (size: 2.1 KB, free: 491.6 MB)
19/03/14 09:26:31 INFO spark.SparkContext: Created broadcast 14 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 15 (MapPartitionsRDD[30] at map at BroadcastRegionJoin.scala:113)
19/03/14 09:26:31 INFO scheduler.TaskSchedulerImpl: Adding task set 15.0 with 4 tasks
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 13.0 (TID 45, localhost, partition 1,PROCESS_LOCAL, 2079 bytes)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 13.0 (TID 46, localhost, partition 2,PROCESS_LOCAL, 2079 bytes)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 13.0 (TID 47, localhost, partition 3,PROCESS_LOCAL, 2146 bytes)
19/03/14 09:26:31 INFO executor.Executor: Running task 1.0 in stage 13.0 (TID 45)
19/03/14 09:26:31 INFO executor.Executor: Running task 2.0 in stage 13.0 (TID 46)
19/03/14 09:26:31 INFO executor.Executor: Running task 0.0 in stage 13.0 (TID 44)
19/03/14 09:26:31 INFO executor.Executor: Running task 3.0 in stage 13.0 (TID 47)
19/03/14 09:26:31 INFO executor.Executor: Finished task 0.0 in stage 13.0 (TID 44). 1090 bytes result sent to driver
19/03/14 09:26:31 INFO executor.Executor: Finished task 2.0 in stage 13.0 (TID 46). 1090 bytes result sent to driver
19/03/14 09:26:31 INFO executor.Executor: Finished task 1.0 in stage 13.0 (TID 45). 1090 bytes result sent to driver
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 15.0 (TID 48, localhost, partition 0,PROCESS_LOCAL, 2004 bytes)
19/03/14 09:26:31 INFO executor.Executor: Running task 0.0 in stage 15.0 (TID 48)
19/03/14 09:26:31 INFO storage.BlockManager: Found block rdd_1_0 locally
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 15.0 (TID 49, localhost, partition 1,PROCESS_LOCAL, 2071 bytes)
19/03/14 09:26:31 INFO executor.Executor: Running task 1.0 in stage 15.0 (TID 49)
19/03/14 09:26:31 INFO executor.Executor: Finished task 3.0 in stage 13.0 (TID 47). 1090 bytes result sent to driver
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 13.0 (TID 44) in 29 ms on localhost (1/4)
19/03/14 09:26:31 INFO executor.Executor: Finished task 0.0 in stage 15.0 (TID 48). 2240 bytes result sent to driver
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 15.0 (TID 50, localhost, partition 2,PROCESS_LOCAL, 2004 bytes)
19/03/14 09:26:31 INFO executor.Executor: Running task 2.0 in stage 15.0 (TID 50)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 13.0 (TID 45) in 28 ms on localhost (2/4)
19/03/14 09:26:31 INFO storage.BlockManager: Found block rdd_1_1 locally
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 15.0 (TID 51, localhost, partition 3,PROCESS_LOCAL, 2071 bytes)
19/03/14 09:26:31 INFO storage.BlockManager: Found block rdd_1_2 locally
19/03/14 09:26:31 INFO executor.Executor: Running task 3.0 in stage 15.0 (TID 51)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 13.0 (TID 46) in 28 ms on localhost (3/4)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 13.0 (TID 47) in 26 ms on localhost (4/4)
19/03/14 09:26:31 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 13.0, whose tasks have all completed, from pool 
19/03/14 09:26:31 INFO scheduler.DAGScheduler: ShuffleMapStage 13 (flatMap at ReadCoverage.scala:59) finished in 0.035 s
19/03/14 09:26:31 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:31 INFO scheduler.DAGScheduler: running: Set(ShuffleMapStage 15)
19/03/14 09:26:31 INFO scheduler.DAGScheduler: waiting: Set(ShuffleMapStage 16, ResultStage 17, ShuffleMapStage 14)
19/03/14 09:26:31 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:31 INFO executor.Executor: Finished task 2.0 in stage 15.0 (TID 50). 2240 bytes result sent to driver
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 15.0 (TID 48) in 11 ms on localhost (1/4)
19/03/14 09:26:31 INFO storage.BlockManager: Found block rdd_1_3 locally
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 14 (MapPartitionsRDD[32] at flatMap at BroadcastRegionJoin.scala:118), which has no missing parents
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 15.0 (TID 50) in 7 ms on localhost (2/4)
19/03/14 09:26:31 INFO storage.MemoryStore: Block broadcast_15 stored as values in memory (estimated size 4.3 KB, free 92.4 KB)
19/03/14 09:26:31 INFO executor.Executor: Finished task 1.0 in stage 15.0 (TID 49). 2240 bytes result sent to driver
19/03/14 09:26:31 INFO storage.MemoryStore: Block broadcast_15_piece0 stored as bytes in memory (estimated size 2.4 KB, free 94.8 KB)
19/03/14 09:26:31 INFO storage.BlockManagerInfo: Added broadcast_15_piece0 in memory on localhost:33474 (size: 2.4 KB, free: 491.6 MB)
19/03/14 09:26:31 INFO spark.SparkContext: Created broadcast 15 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:31 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 14 (MapPartitionsRDD[32] at flatMap at BroadcastRegionJoin.scala:118)
19/03/14 09:26:31 INFO scheduler.TaskSchedulerImpl: Adding task set 14.0 with 4 tasks
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 14.0 (TID 52, localhost, partition 0,NODE_LOCAL, 1883 bytes)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 14.0 (TID 53, localhost, partition 2,NODE_LOCAL, 1883 bytes)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 14.0 (TID 54, localhost, partition 1,PROCESS_LOCAL, 1883 bytes)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 15.0 (TID 49) in 15 ms on localhost (3/4)
19/03/14 09:26:31 INFO executor.Executor: Running task 2.0 in stage 14.0 (TID 53)
19/03/14 09:26:31 INFO executor.Executor: Running task 1.0 in stage 14.0 (TID 54)
19/03/14 09:26:31 INFO executor.Executor: Running task 0.0 in stage 14.0 (TID 52)
19/03/14 09:26:31 INFO spark.CacheManager: Partition rdd_23_0 not found, computing it
19/03/14 09:26:31 INFO spark.CacheManager: Partition rdd_23_2 not found, computing it
19/03/14 09:26:31 INFO spark.CacheManager: Partition rdd_23_1 not found, computing it
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Getting 4 non-empty blocks out of 4 blocks
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Getting 4 non-empty blocks out of 4 blocks
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Getting 0 non-empty blocks out of 4 blocks
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:31 INFO executor.Executor: Finished task 3.0 in stage 15.0 (TID 51). 2240 bytes result sent to driver
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 14.0 (TID 55, localhost, partition 3,PROCESS_LOCAL, 1883 bytes)
19/03/14 09:26:31 INFO executor.Executor: Running task 3.0 in stage 14.0 (TID 55)
19/03/14 09:26:31 INFO spark.CacheManager: Partition rdd_23_3 not found, computing it
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 15.0 (TID 51) in 16 ms on localhost (4/4)
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Getting 0 non-empty blocks out of 4 blocks
19/03/14 09:26:31 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 15.0, whose tasks have all completed, from pool 
19/03/14 09:26:31 INFO storage.MemoryStore: Block rdd_23_1 stored as values in memory (estimated size 16.0 B, free 94.8 KB)
19/03/14 09:26:31 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:31 INFO scheduler.DAGScheduler: ShuffleMapStage 15 (map at BroadcastRegionJoin.scala:113) finished in 0.036 s
19/03/14 09:26:31 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:31 INFO scheduler.DAGScheduler: running: Set(ShuffleMapStage 14)
19/03/14 09:26:31 INFO scheduler.DAGScheduler: waiting: Set(ShuffleMapStage 16, ResultStage 17)
19/03/14 09:26:31 INFO storage.BlockManagerInfo: Added rdd_23_1 in memory on localhost:33474 (size: 16.0 B, free: 491.6 MB)
19/03/14 09:26:31 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:31 INFO executor.Executor: Finished task 1.0 in stage 14.0 (TID 54). 1886 bytes result sent to driver
19/03/14 09:26:31 INFO storage.MemoryStore: Block rdd_23_3 stored as values in memory (estimated size 16.0 B, free 94.9 KB)
19/03/14 09:26:31 INFO storage.BlockManagerInfo: Added rdd_23_3 in memory on localhost:33474 (size: 16.0 B, free: 491.6 MB)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 14.0 (TID 54) in 8 ms on localhost (1/4)
19/03/14 09:26:31 INFO executor.Executor: Finished task 3.0 in stage 14.0 (TID 55). 1886 bytes result sent to driver
19/03/14 09:26:31 INFO storage.BlockManagerInfo: Removed broadcast_14_piece0 on localhost:33474 in memory (size: 2.1 KB, free: 491.6 MB)
19/03/14 09:26:31 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 14.0 (TID 55) in 43 ms on localhost (2/4)
19/03/14 09:26:31 INFO storage.BlockManagerInfo: Removed broadcast_13_piece0 on localhost:33474 in memory (size: 1677.0 B, free: 491.6 MB)
19/03/14 09:26:31 INFO storage.BlockManagerInfo: Removed broadcast_11_piece0 on localhost:33474 in memory (size: 2.5 KB, free: 491.6 MB)
19/03/14 09:26:31 INFO spark.ContextCleaner: Cleaned accumulator 47
19/03/14 09:26:31 INFO storage.BlockManagerInfo: Removed broadcast_10_piece0 on localhost:33474 in memory (size: 2.2 KB, free: 491.6 MB)
19/03/14 09:26:31 INFO spark.ContextCleaner: Cleaned accumulator 46
19/03/14 09:26:31 INFO spark.ContextCleaner: Cleaned shuffle 4
19/03/14 09:26:31 INFO storage.BlockManagerInfo: Removed broadcast_9_piece0 on localhost:33474 in memory (size: 1856.0 B, free: 491.6 MB)
19/03/14 09:26:31 INFO spark.ContextCleaner: Cleaned accumulator 45
19/03/14 09:26:31 INFO storage.BlockManagerInfo: Removed broadcast_8_piece0 on localhost:33474 in memory (size: 2.1 KB, free: 491.6 MB)
19/03/14 09:26:31 INFO spark.ContextCleaner: Cleaned accumulator 44
19/03/14 09:26:31 INFO spark.ContextCleaner: Cleaned shuffle 3
19/03/14 09:26:31 INFO storage.BlockManagerInfo: Removed broadcast_7_piece0 on localhost:33474 in memory (size: 1186.0 B, free: 491.6 MB)
19/03/14 09:26:31 INFO spark.ContextCleaner: Cleaned accumulator 43
19/03/14 09:26:31 INFO storage.BlockManagerInfo: Removed broadcast_6_piece0 on localhost:33474 in memory (size: 2047.0 B, free: 491.6 MB)
19/03/14 09:26:31 INFO spark.ContextCleaner: Cleaned accumulator 42
19/03/14 09:26:31 INFO storage.BlockManagerInfo: Removed broadcast_5_piece0 on localhost:33474 in memory (size: 2.1 KB, free: 491.6 MB)
19/03/14 09:26:31 INFO spark.ContextCleaner: Cleaned accumulator 41
19/03/14 09:26:31 INFO storage.BlockManagerInfo: Removed broadcast_4_piece0 on localhost:33474 in memory (size: 2039.0 B, free: 491.6 MB)
19/03/14 09:26:31 INFO spark.ContextCleaner: Cleaned accumulator 40
19/03/14 09:26:31 INFO storage.BlockManagerInfo: Removed broadcast_2_piece0 on localhost:33474 in memory (size: 2.5 KB, free: 491.6 MB)
19/03/14 09:26:31 INFO spark.ContextCleaner: Cleaned accumulator 39
19/03/14 09:26:32 INFO storage.BlockManagerInfo: Removed broadcast_1_piece0 on localhost:33474 in memory (size: 2.1 KB, free: 491.6 MB)
19/03/14 09:26:32 INFO storage.MemoryStore: Block rdd_23_0 stored as values in memory (estimated size 22.8 KB, free 53.5 KB)
19/03/14 09:26:32 INFO storage.MemoryStore: Block rdd_23_2 stored as values in memory (estimated size 22.8 KB, free 72.3 KB)
19/03/14 09:26:32 INFO storage.BlockManagerInfo: Added rdd_23_0 in memory on localhost:33474 (size: 22.8 KB, free: 491.6 MB)
19/03/14 09:26:32 INFO spark.ContextCleaner: Cleaned accumulator 38
19/03/14 09:26:32 INFO storage.BlockManagerInfo: Added rdd_23_2 in memory on localhost:33474 (size: 22.8 KB, free: 491.6 MB)
19/03/14 09:26:32 INFO spark.ContextCleaner: Cleaned shuffle 0
19/03/14 09:26:32 INFO storage.BlockManagerInfo: Removed broadcast_0_piece0 on localhost:33474 in memory (size: 1324.0 B, free: 491.6 MB)
19/03/14 09:26:32 INFO spark.ContextCleaner: Cleaned accumulator 37
19/03/14 09:26:32 INFO executor.Executor: Finished task 0.0 in stage 14.0 (TID 52). 1886 bytes result sent to driver
19/03/14 09:26:32 INFO executor.Executor: Finished task 2.0 in stage 14.0 (TID 53). 1886 bytes result sent to driver
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 14.0 (TID 53) in 89 ms on localhost (3/4)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 14.0 (TID 52) in 90 ms on localhost (4/4)
19/03/14 09:26:32 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 14.0, whose tasks have all completed, from pool 
19/03/14 09:26:32 INFO scheduler.DAGScheduler: ShuffleMapStage 14 (flatMap at BroadcastRegionJoin.scala:118) finished in 0.091 s
19/03/14 09:26:32 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:32 INFO scheduler.DAGScheduler: running: Set()
19/03/14 09:26:32 INFO scheduler.DAGScheduler: waiting: Set(ShuffleMapStage 16, ResultStage 17)
19/03/14 09:26:32 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 16 (MapPartitionsRDD[39] at map at CoverageStats.scala:172), which has no missing parents
19/03/14 09:26:32 INFO storage.MemoryStore: Block broadcast_16 stored as values in memory (estimated size 4.1 KB, free 73.0 KB)
19/03/14 09:26:32 INFO storage.MemoryStore: Block broadcast_16_piece0 stored as bytes in memory (estimated size 2.2 KB, free 75.2 KB)
19/03/14 09:26:32 INFO storage.BlockManagerInfo: Added broadcast_16_piece0 in memory on localhost:33474 (size: 2.2 KB, free: 491.6 MB)
19/03/14 09:26:32 INFO spark.SparkContext: Created broadcast 16 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 16 (MapPartitionsRDD[39] at map at CoverageStats.scala:172)
19/03/14 09:26:32 INFO scheduler.TaskSchedulerImpl: Adding task set 16.0 with 4 tasks
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 16.0 (TID 56, localhost, partition 0,PROCESS_LOCAL, 1956 bytes)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 16.0 (TID 57, localhost, partition 1,PROCESS_LOCAL, 1956 bytes)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 16.0 (TID 58, localhost, partition 2,PROCESS_LOCAL, 1956 bytes)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 16.0 (TID 59, localhost, partition 3,PROCESS_LOCAL, 1956 bytes)
19/03/14 09:26:32 INFO executor.Executor: Running task 0.0 in stage 16.0 (TID 56)
19/03/14 09:26:32 INFO executor.Executor: Running task 3.0 in stage 16.0 (TID 59)
19/03/14 09:26:32 INFO executor.Executor: Running task 1.0 in stage 16.0 (TID 57)
19/03/14 09:26:32 INFO executor.Executor: Running task 2.0 in stage 16.0 (TID 58)
19/03/14 09:26:32 INFO spark.CacheManager: Partition rdd_37_1 not found, computing it
19/03/14 09:26:32 INFO spark.CacheManager: Partition rdd_37_0 not found, computing it
19/03/14 09:26:32 INFO spark.CacheManager: Partition rdd_37_3 not found, computing it
19/03/14 09:26:32 INFO spark.CacheManager: Partition rdd_37_2 not found, computing it
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Getting 2 non-empty blocks out of 4 blocks
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Getting 2 non-empty blocks out of 4 blocks
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Getting 2 non-empty blocks out of 4 blocks
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Getting 2 non-empty blocks out of 4 blocks
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 1 ms
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Getting 2 non-empty blocks out of 4 blocks
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Getting 2 non-empty blocks out of 4 blocks
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Getting 2 non-empty blocks out of 4 blocks
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Getting 2 non-empty blocks out of 4 blocks
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:32 INFO storage.MemoryStore: Block rdd_37_0 stored as values in memory (estimated size 16.0 B, free 75.2 KB)
19/03/14 09:26:32 INFO storage.BlockManagerInfo: Added rdd_37_0 in memory on localhost:33474 (size: 16.0 B, free: 491.6 MB)
19/03/14 09:26:32 INFO storage.MemoryStore: Block rdd_37_3 stored as values in memory (estimated size 16.0 B, free 75.2 KB)
19/03/14 09:26:32 INFO storage.BlockManagerInfo: Added rdd_37_3 in memory on localhost:33474 (size: 16.0 B, free: 491.6 MB)
19/03/14 09:26:32 INFO storage.MemoryStore: Block rdd_37_2 stored as values in memory (estimated size 16.0 B, free 75.2 KB)
19/03/14 09:26:32 INFO storage.BlockManagerInfo: Added rdd_37_2 in memory on localhost:33474 (size: 16.0 B, free: 491.6 MB)
19/03/14 09:26:32 INFO executor.Executor: Finished task 0.0 in stage 16.0 (TID 56). 1886 bytes result sent to driver
19/03/14 09:26:32 INFO executor.Executor: Finished task 3.0 in stage 16.0 (TID 59). 1886 bytes result sent to driver
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 16.0 (TID 56) in 13 ms on localhost (1/4)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 16.0 (TID 59) in 12 ms on localhost (2/4)
19/03/14 09:26:32 INFO executor.Executor: Finished task 2.0 in stage 16.0 (TID 58). 1886 bytes result sent to driver
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 16.0 (TID 58) in 16 ms on localhost (3/4)
19/03/14 09:26:32 INFO storage.MemoryStore: Block rdd_37_1 stored as values in memory (estimated size 45.8 KB, free 121.1 KB)
19/03/14 09:26:32 INFO storage.BlockManagerInfo: Added rdd_37_1 in memory on localhost:33474 (size: 45.8 KB, free: 491.5 MB)
19/03/14 09:26:32 INFO executor.Executor: Finished task 1.0 in stage 16.0 (TID 57). 1886 bytes result sent to driver
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 16.0 (TID 57) in 56 ms on localhost (4/4)
19/03/14 09:26:32 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 16.0, whose tasks have all completed, from pool 
19/03/14 09:26:32 INFO scheduler.DAGScheduler: ShuffleMapStage 16 (map at CoverageStats.scala:172) finished in 0.057 s
19/03/14 09:26:32 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:32 INFO scheduler.DAGScheduler: running: Set()
19/03/14 09:26:32 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 17)
19/03/14 09:26:32 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Submitting ResultStage 17 (ShuffledRDD[40] at reduceByKey at CoverageStats.scala:173), which has no missing parents
19/03/14 09:26:32 INFO storage.MemoryStore: Block broadcast_17 stored as values in memory (estimated size 2.5 KB, free 123.6 KB)
19/03/14 09:26:32 INFO storage.MemoryStore: Block broadcast_17_piece0 stored as bytes in memory (estimated size 1554.0 B, free 125.1 KB)
19/03/14 09:26:32 INFO storage.BlockManagerInfo: Added broadcast_17_piece0 in memory on localhost:33474 (size: 1554.0 B, free: 491.5 MB)
19/03/14 09:26:32 INFO spark.SparkContext: Created broadcast 17 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ResultStage 17 (ShuffledRDD[40] at reduceByKey at CoverageStats.scala:173)
19/03/14 09:26:32 INFO scheduler.TaskSchedulerImpl: Adding task set 17.0 with 4 tasks
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 17.0 (TID 60, localhost, partition 1,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 17.0 (TID 61, localhost, partition 2,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 17.0 (TID 62, localhost, partition 0,PROCESS_LOCAL, 1894 bytes)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 17.0 (TID 63, localhost, partition 3,PROCESS_LOCAL, 1894 bytes)
19/03/14 09:26:32 INFO executor.Executor: Running task 2.0 in stage 17.0 (TID 61)
19/03/14 09:26:32 INFO executor.Executor: Running task 3.0 in stage 17.0 (TID 63)
19/03/14 09:26:32 INFO executor.Executor: Running task 0.0 in stage 17.0 (TID 62)
19/03/14 09:26:32 INFO executor.Executor: Running task 1.0 in stage 17.0 (TID 60)
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Getting 0 non-empty blocks out of 4 blocks
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Getting 0 non-empty blocks out of 4 blocks
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:32 INFO executor.Executor: Finished task 0.0 in stage 17.0 (TID 62). 1124 bytes result sent to driver
19/03/14 09:26:32 INFO executor.Executor: Finished task 3.0 in stage 17.0 (TID 63). 1124 bytes result sent to driver
19/03/14 09:26:32 INFO executor.Executor: Finished task 1.0 in stage 17.0 (TID 60). 1131 bytes result sent to driver
19/03/14 09:26:32 INFO executor.Executor: Finished task 2.0 in stage 17.0 (TID 61). 1131 bytes result sent to driver
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 17.0 (TID 63) in 8 ms on localhost (1/4)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 17.0 (TID 60) in 9 ms on localhost (2/4)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 17.0 (TID 62) in 8 ms on localhost (3/4)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 17.0 (TID 61) in 9 ms on localhost (4/4)
19/03/14 09:26:32 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 17.0, whose tasks have all completed, from pool 
19/03/14 09:26:32 INFO scheduler.DAGScheduler: ResultStage 17 (collect at CoverageStats.scala:174) finished in 0.010 s
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Job 6 finished: collect at CoverageStats.scala:174, took 0.220178 s
19/03/14 09:26:32 INFO spark.SparkContext: Starting job: collect at CoverageStats.scala:174
19/03/14 09:26:32 INFO spark.MapOutputTrackerMaster: Size of output statuses for shuffle 8 is 159 bytes
19/03/14 09:26:32 INFO spark.MapOutputTrackerMaster: Size of output statuses for shuffle 6 is 161 bytes
19/03/14 09:26:32 INFO spark.MapOutputTrackerMaster: Size of output statuses for shuffle 5 is 161 bytes
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Registering RDD 42 (map at CoverageStats.scala:172)
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Got job 7 (collect at CoverageStats.scala:174) with 4 output partitions
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Final stage: ResultStage 22 (collect at CoverageStats.scala:174)
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 21)
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Missing parents: List(ShuffleMapStage 21)
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 21 (MapPartitionsRDD[42] at map at CoverageStats.scala:172), which has no missing parents
19/03/14 09:26:32 INFO storage.MemoryStore: Block broadcast_18 stored as values in memory (estimated size 4.2 KB, free 129.4 KB)
19/03/14 09:26:32 INFO storage.MemoryStore: Block broadcast_18_piece0 stored as bytes in memory (estimated size 2.2 KB, free 131.6 KB)
19/03/14 09:26:32 INFO storage.BlockManagerInfo: Added broadcast_18_piece0 in memory on localhost:33474 (size: 2.2 KB, free: 491.5 MB)
19/03/14 09:26:32 INFO spark.SparkContext: Created broadcast 18 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 21 (MapPartitionsRDD[42] at map at CoverageStats.scala:172)
19/03/14 09:26:32 INFO scheduler.TaskSchedulerImpl: Adding task set 21.0 with 4 tasks
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 21.0 (TID 64, localhost, partition 0,PROCESS_LOCAL, 1956 bytes)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 21.0 (TID 65, localhost, partition 1,PROCESS_LOCAL, 1956 bytes)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 21.0 (TID 66, localhost, partition 2,PROCESS_LOCAL, 1956 bytes)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 21.0 (TID 67, localhost, partition 3,PROCESS_LOCAL, 1956 bytes)
19/03/14 09:26:32 INFO executor.Executor: Running task 2.0 in stage 21.0 (TID 66)
19/03/14 09:26:32 INFO executor.Executor: Running task 3.0 in stage 21.0 (TID 67)
19/03/14 09:26:32 INFO executor.Executor: Running task 0.0 in stage 21.0 (TID 64)
19/03/14 09:26:32 INFO executor.Executor: Running task 1.0 in stage 21.0 (TID 65)
19/03/14 09:26:32 INFO storage.BlockManager: Found block rdd_37_0 locally
19/03/14 09:26:32 INFO storage.BlockManager: Found block rdd_37_3 locally
19/03/14 09:26:32 INFO storage.BlockManager: Found block rdd_37_2 locally
19/03/14 09:26:32 INFO storage.BlockManager: Found block rdd_37_1 locally
19/03/14 09:26:32 INFO executor.Executor: Finished task 0.0 in stage 21.0 (TID 64). 2240 bytes result sent to driver
19/03/14 09:26:32 INFO executor.Executor: Finished task 3.0 in stage 21.0 (TID 67). 2240 bytes result sent to driver
19/03/14 09:26:32 INFO executor.Executor: Finished task 2.0 in stage 21.0 (TID 66). 2240 bytes result sent to driver
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 21.0 (TID 64) in 8 ms on localhost (1/4)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 21.0 (TID 67) in 7 ms on localhost (2/4)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 21.0 (TID 66) in 8 ms on localhost (3/4)
19/03/14 09:26:32 INFO executor.Executor: Finished task 1.0 in stage 21.0 (TID 65). 2240 bytes result sent to driver
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 21.0 (TID 65) in 14 ms on localhost (4/4)
19/03/14 09:26:32 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 21.0, whose tasks have all completed, from pool 
19/03/14 09:26:32 INFO scheduler.DAGScheduler: ShuffleMapStage 21 (map at CoverageStats.scala:172) finished in 0.014 s
19/03/14 09:26:32 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:32 INFO scheduler.DAGScheduler: running: Set()
19/03/14 09:26:32 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 22)
19/03/14 09:26:32 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Submitting ResultStage 22 (ShuffledRDD[43] at reduceByKey at CoverageStats.scala:173), which has no missing parents
19/03/14 09:26:32 INFO storage.MemoryStore: Block broadcast_19 stored as values in memory (estimated size 2.5 KB, free 134.1 KB)
19/03/14 09:26:32 INFO storage.MemoryStore: Block broadcast_19_piece0 stored as bytes in memory (estimated size 1554.0 B, free 135.6 KB)
19/03/14 09:26:32 INFO storage.BlockManagerInfo: Added broadcast_19_piece0 in memory on localhost:33474 (size: 1554.0 B, free: 491.5 MB)
19/03/14 09:26:32 INFO spark.SparkContext: Created broadcast 19 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ResultStage 22 (ShuffledRDD[43] at reduceByKey at CoverageStats.scala:173)
19/03/14 09:26:32 INFO scheduler.TaskSchedulerImpl: Adding task set 22.0 with 4 tasks
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 22.0 (TID 68, localhost, partition 1,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 22.0 (TID 69, localhost, partition 0,PROCESS_LOCAL, 1894 bytes)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 22.0 (TID 70, localhost, partition 2,PROCESS_LOCAL, 1894 bytes)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 22.0 (TID 71, localhost, partition 3,PROCESS_LOCAL, 1894 bytes)
19/03/14 09:26:32 INFO executor.Executor: Running task 1.0 in stage 22.0 (TID 68)
19/03/14 09:26:32 INFO executor.Executor: Running task 2.0 in stage 22.0 (TID 70)
19/03/14 09:26:32 INFO executor.Executor: Running task 3.0 in stage 22.0 (TID 71)
19/03/14 09:26:32 INFO executor.Executor: Running task 0.0 in stage 22.0 (TID 69)
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Getting 0 non-empty blocks out of 4 blocks
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Getting 0 non-empty blocks out of 4 blocks
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Getting 0 non-empty blocks out of 4 blocks
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 1 ms
19/03/14 09:26:32 INFO executor.Executor: Finished task 2.0 in stage 22.0 (TID 70). 1124 bytes result sent to driver
19/03/14 09:26:32 INFO executor.Executor: Finished task 3.0 in stage 22.0 (TID 71). 1124 bytes result sent to driver
19/03/14 09:26:32 INFO executor.Executor: Finished task 1.0 in stage 22.0 (TID 68). 1131 bytes result sent to driver
19/03/14 09:26:32 INFO executor.Executor: Finished task 0.0 in stage 22.0 (TID 69). 1124 bytes result sent to driver
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 22.0 (TID 71) in 7 ms on localhost (1/4)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 22.0 (TID 70) in 9 ms on localhost (2/4)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 22.0 (TID 69) in 9 ms on localhost (3/4)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 22.0 (TID 68) in 11 ms on localhost (4/4)
19/03/14 09:26:32 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 22.0, whose tasks have all completed, from pool 
19/03/14 09:26:32 INFO scheduler.DAGScheduler: ResultStage 22 (collect at CoverageStats.scala:174) finished in 0.012 s
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Job 7 finished: collect at CoverageStats.scala:174, took 0.040821 s
19/03/14 09:26:32 INFO spark.MapOutputTrackerMasterEndpoint: MapOutputTrackerMasterEndpoint stopped!
19/03/14 09:26:32 INFO storage.MemoryStore: MemoryStore cleared
19/03/14 09:26:32 INFO storage.BlockManager: BlockManager stopped
19/03/14 09:26:32 INFO storage.BlockManagerMaster: BlockManagerMaster stopped
19/03/14 09:26:32 INFO scheduler.OutputCommitCoordinator$OutputCommitCoordinatorEndpoint: OutputCommitCoordinator stopped!
19/03/14 09:26:32 INFO remote.RemoteActorRefProvider$RemotingTerminator: Shutting down remote daemon.
19/03/14 09:26:32 INFO spark.SparkContext: Successfully stopped SparkContext
19/03/14 09:26:32 INFO remote.RemoteActorRefProvider$RemotingTerminator: Remote daemon shut down; proceeding with flushing remote transports.
- two SO transcripts, one fully covered, one not covered at all, one random read
19/03/14 09:26:32 INFO remote.RemoteActorRefProvider$RemotingTerminator: Remoting shut down.
19/03/14 09:26:32 INFO spark.SparkContext: Running Spark version 1.6.1
19/03/14 09:26:32 INFO spark.SecurityManager: Changing view acls to: jenkins
19/03/14 09:26:32 INFO spark.SecurityManager: Changing modify acls to: jenkins
19/03/14 09:26:32 INFO spark.SecurityManager: SecurityManager: authentication disabled; ui acls disabled; users with view permissions: Set(jenkins); users with modify permissions: Set(jenkins)
19/03/14 09:26:32 INFO util.Utils: Successfully started service 'sparkDriver' on port 53585.
19/03/14 09:26:32 INFO slf4j.Slf4jLogger: Slf4jLogger started
19/03/14 09:26:32 INFO Remoting: Starting remoting
19/03/14 09:26:32 INFO Remoting: Remoting started; listening on addresses :[akka.tcp://sparkDriverActorSystem@localhost:53586]
19/03/14 09:26:32 INFO util.Utils: Successfully started service 'sparkDriverActorSystem' on port 53586.
19/03/14 09:26:32 INFO spark.SparkEnv: Registering MapOutputTracker
19/03/14 09:26:32 INFO spark.SparkEnv: Registering BlockManagerMaster
19/03/14 09:26:32 INFO storage.DiskBlockManager: Created local directory at /tmp/blockmgr-1c1d9efe-0886-4daf-b0c2-d88f812a0391
19/03/14 09:26:32 INFO storage.MemoryStore: MemoryStore started with capacity 501.0 MB
19/03/14 09:26:32 INFO spark.SparkEnv: Registering OutputCommitCoordinator
PanelBasesSuite:
19/03/14 09:26:32 INFO executor.Executor: Starting executor ID driver on host localhost
19/03/14 09:26:32 INFO util.Utils: Successfully started service 'org.apache.spark.network.netty.NettyBlockTransferService' on port 38404.
19/03/14 09:26:32 INFO netty.NettyBlockTransferService: Server created on 38404
19/03/14 09:26:32 INFO storage.BlockManagerMaster: Trying to register BlockManager
19/03/14 09:26:32 INFO storage.BlockManagerMasterEndpoint: Registering block manager localhost:38404 with 501.0 MB RAM, BlockManagerId(driver, localhost, 38404)
19/03/14 09:26:32 INFO storage.BlockManagerMaster: Registered BlockManager
19/03/14 09:26:32 INFO spark.SparkContext: Starting job: count at PanelBases.scala:67
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Got job 0 (count at PanelBases.scala:67) with 4 output partitions
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Final stage: ResultStage 0 (count at PanelBases.scala:67)
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Parents of final stage: List()
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Missing parents: List()
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Submitting ResultStage 0 (MapPartitionsRDD[2] at flatMap at PanelBases.scala:46), which has no missing parents
19/03/14 09:26:32 INFO storage.MemoryStore: Block broadcast_0 stored as values in memory (estimated size 1840.0 B, free 1840.0 B)
19/03/14 09:26:32 INFO storage.MemoryStore: Block broadcast_0_piece0 stored as bytes in memory (estimated size 1207.0 B, free 3.0 KB)
19/03/14 09:26:32 INFO storage.BlockManagerInfo: Added broadcast_0_piece0 in memory on localhost:38404 (size: 1207.0 B, free: 501.0 MB)
19/03/14 09:26:32 INFO spark.SparkContext: Created broadcast 0 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ResultStage 0 (MapPartitionsRDD[2] at flatMap at PanelBases.scala:46)
19/03/14 09:26:32 INFO scheduler.TaskSchedulerImpl: Adding task set 0.0 with 4 tasks
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 0.0 (TID 0, localhost, partition 0,PROCESS_LOCAL, 2015 bytes)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 0.0 (TID 1, localhost, partition 1,PROCESS_LOCAL, 2015 bytes)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 0.0 (TID 2, localhost, partition 2,PROCESS_LOCAL, 2015 bytes)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 0.0 (TID 3, localhost, partition 3,PROCESS_LOCAL, 2050 bytes)
19/03/14 09:26:32 INFO executor.Executor: Running task 0.0 in stage 0.0 (TID 0)
19/03/14 09:26:32 INFO executor.Executor: Running task 1.0 in stage 0.0 (TID 1)
19/03/14 09:26:32 INFO executor.Executor: Running task 2.0 in stage 0.0 (TID 2)
19/03/14 09:26:32 INFO executor.Executor: Running task 3.0 in stage 0.0 (TID 3)
19/03/14 09:26:32 INFO spark.CacheManager: Partition rdd_2_1 not found, computing it
19/03/14 09:26:32 INFO spark.CacheManager: Partition rdd_2_2 not found, computing it
19/03/14 09:26:32 INFO spark.CacheManager: Partition rdd_2_0 not found, computing it
19/03/14 09:26:32 INFO spark.CacheManager: Partition rdd_2_3 not found, computing it
19/03/14 09:26:32 INFO storage.MemoryStore: Block rdd_2_1 stored as values in memory (estimated size 16.0 B, free 3.0 KB)
19/03/14 09:26:32 INFO storage.BlockManagerInfo: Added rdd_2_1 in memory on localhost:38404 (size: 16.0 B, free: 501.0 MB)
19/03/14 09:26:32 INFO storage.MemoryStore: Block rdd_2_2 stored as values in memory (estimated size 16.0 B, free 3.0 KB)
19/03/14 09:26:32 INFO storage.MemoryStore: Block rdd_2_0 stored as values in memory (estimated size 16.0 B, free 3.0 KB)
19/03/14 09:26:32 INFO storage.BlockManagerInfo: Added rdd_2_2 in memory on localhost:38404 (size: 16.0 B, free: 501.0 MB)
19/03/14 09:26:32 INFO storage.BlockManagerInfo: Added rdd_2_0 in memory on localhost:38404 (size: 16.0 B, free: 501.0 MB)
19/03/14 09:26:32 INFO storage.MemoryStore: Block rdd_2_3 stored as values in memory (estimated size 5.5 KB, free 8.5 KB)
19/03/14 09:26:32 INFO executor.Executor: Finished task 1.0 in stage 0.0 (TID 1). 1487 bytes result sent to driver
19/03/14 09:26:32 INFO storage.BlockManagerInfo: Added rdd_2_3 in memory on localhost:38404 (size: 5.5 KB, free: 501.0 MB)
19/03/14 09:26:32 INFO executor.Executor: Finished task 2.0 in stage 0.0 (TID 2). 1487 bytes result sent to driver
19/03/14 09:26:32 INFO executor.Executor: Finished task 0.0 in stage 0.0 (TID 0). 1487 bytes result sent to driver
19/03/14 09:26:32 INFO executor.Executor: Finished task 3.0 in stage 0.0 (TID 3). 1488 bytes result sent to driver
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 0.0 (TID 1) in 13 ms on localhost (1/4)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 0.0 (TID 2) in 13 ms on localhost (2/4)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 0.0 (TID 0) in 15 ms on localhost (3/4)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 0.0 (TID 3) in 12 ms on localhost (4/4)
19/03/14 09:26:32 INFO scheduler.DAGScheduler: ResultStage 0 (count at PanelBases.scala:67) finished in 0.017 s
19/03/14 09:26:32 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 0.0, whose tasks have all completed, from pool 
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Job 0 finished: count at PanelBases.scala:67, took 0.024229 s
19/03/14 09:26:32 INFO spark.SparkContext: Starting job: count at PanelBases.scala:68
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Registering RDD 4 (distinct at PanelBases.scala:59)
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Got job 1 (count at PanelBases.scala:68) with 4 output partitions
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Final stage: ResultStage 2 (count at PanelBases.scala:68)
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 1)
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Missing parents: List(ShuffleMapStage 1)
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 1 (MapPartitionsRDD[4] at distinct at PanelBases.scala:59), which has no missing parents
19/03/14 09:26:32 INFO storage.MemoryStore: Block broadcast_1 stored as values in memory (estimated size 2.9 KB, free 11.4 KB)
19/03/14 09:26:32 INFO storage.MemoryStore: Block broadcast_1_piece0 stored as bytes in memory (estimated size 1761.0 B, free 13.1 KB)
19/03/14 09:26:32 INFO storage.BlockManagerInfo: Added broadcast_1_piece0 in memory on localhost:38404 (size: 1761.0 B, free: 501.0 MB)
19/03/14 09:26:32 INFO spark.SparkContext: Created broadcast 1 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 1 (MapPartitionsRDD[4] at distinct at PanelBases.scala:59)
19/03/14 09:26:32 INFO scheduler.TaskSchedulerImpl: Adding task set 1.0 with 4 tasks
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 1.0 (TID 4, localhost, partition 0,PROCESS_LOCAL, 2004 bytes)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 1.0 (TID 5, localhost, partition 1,PROCESS_LOCAL, 2004 bytes)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 1.0 (TID 6, localhost, partition 2,PROCESS_LOCAL, 2004 bytes)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 1.0 (TID 7, localhost, partition 3,PROCESS_LOCAL, 2039 bytes)
19/03/14 09:26:32 INFO executor.Executor: Running task 2.0 in stage 1.0 (TID 6)
19/03/14 09:26:32 INFO executor.Executor: Running task 3.0 in stage 1.0 (TID 7)
19/03/14 09:26:32 INFO executor.Executor: Running task 0.0 in stage 1.0 (TID 4)
19/03/14 09:26:32 INFO executor.Executor: Running task 1.0 in stage 1.0 (TID 5)
19/03/14 09:26:32 INFO executor.Executor: Finished task 2.0 in stage 1.0 (TID 6). 1090 bytes result sent to driver
19/03/14 09:26:32 INFO executor.Executor: Finished task 1.0 in stage 1.0 (TID 5). 1090 bytes result sent to driver
19/03/14 09:26:32 INFO executor.Executor: Finished task 0.0 in stage 1.0 (TID 4). 1090 bytes result sent to driver
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 1.0 (TID 6) in 11 ms on localhost (1/4)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 1.0 (TID 5) in 12 ms on localhost (2/4)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 1.0 (TID 4) in 13 ms on localhost (3/4)
19/03/14 09:26:32 INFO executor.Executor: Finished task 3.0 in stage 1.0 (TID 7). 1090 bytes result sent to driver
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 1.0 (TID 7) in 16 ms on localhost (4/4)
19/03/14 09:26:32 INFO scheduler.DAGScheduler: ShuffleMapStage 1 (distinct at PanelBases.scala:59) finished in 0.019 s
19/03/14 09:26:32 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 1.0, whose tasks have all completed, from pool 
19/03/14 09:26:32 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:32 INFO scheduler.DAGScheduler: running: Set()
19/03/14 09:26:32 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 2)
19/03/14 09:26:32 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Submitting ResultStage 2 (MapPartitionsRDD[6] at distinct at PanelBases.scala:59), which has no missing parents
19/03/14 09:26:32 INFO storage.MemoryStore: Block broadcast_2 stored as values in memory (estimated size 3.1 KB, free 16.2 KB)
19/03/14 09:26:32 INFO storage.MemoryStore: Block broadcast_2_piece0 stored as bytes in memory (estimated size 1840.0 B, free 18.0 KB)
19/03/14 09:26:32 INFO storage.BlockManagerInfo: Added broadcast_2_piece0 in memory on localhost:38404 (size: 1840.0 B, free: 501.0 MB)
19/03/14 09:26:32 INFO spark.SparkContext: Created broadcast 2 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ResultStage 2 (MapPartitionsRDD[6] at distinct at PanelBases.scala:59)
19/03/14 09:26:32 INFO scheduler.TaskSchedulerImpl: Adding task set 2.0 with 4 tasks
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 2.0 (TID 8, localhost, partition 0,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 2.0 (TID 9, localhost, partition 1,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 2.0 (TID 10, localhost, partition 2,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 2.0 (TID 11, localhost, partition 3,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:32 INFO executor.Executor: Running task 0.0 in stage 2.0 (TID 8)
19/03/14 09:26:32 INFO executor.Executor: Running task 1.0 in stage 2.0 (TID 9)
19/03/14 09:26:32 INFO executor.Executor: Running task 2.0 in stage 2.0 (TID 10)
19/03/14 09:26:32 INFO executor.Executor: Running task 3.0 in stage 2.0 (TID 11)
19/03/14 09:26:32 INFO spark.CacheManager: Partition rdd_6_0 not found, computing it
19/03/14 09:26:32 INFO spark.CacheManager: Partition rdd_6_1 not found, computing it
19/03/14 09:26:32 INFO spark.CacheManager: Partition rdd_6_3 not found, computing it
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 1 ms
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:32 INFO spark.CacheManager: Partition rdd_6_2 not found, computing it
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:32 INFO storage.MemoryStore: Block rdd_6_1 stored as values in memory (estimated size 2.5 KB, free 20.5 KB)
19/03/14 09:26:32 INFO storage.MemoryStore: Block rdd_6_3 stored as values in memory (estimated size 2.7 KB, free 23.2 KB)
19/03/14 09:26:32 INFO storage.BlockManagerInfo: Added rdd_6_1 in memory on localhost:38404 (size: 2.5 KB, free: 501.0 MB)
19/03/14 09:26:32 INFO storage.MemoryStore: Block rdd_6_0 stored as values in memory (estimated size 3.4 KB, free 26.6 KB)
19/03/14 09:26:32 INFO storage.BlockManagerInfo: Added rdd_6_3 in memory on localhost:38404 (size: 2.7 KB, free: 501.0 MB)
19/03/14 09:26:32 INFO storage.MemoryStore: Block rdd_6_2 stored as values in memory (estimated size 3.2 KB, free 29.8 KB)
19/03/14 09:26:32 INFO storage.BlockManagerInfo: Added rdd_6_0 in memory on localhost:38404 (size: 3.4 KB, free: 501.0 MB)
19/03/14 09:26:32 INFO storage.BlockManagerInfo: Added rdd_6_2 in memory on localhost:38404 (size: 3.2 KB, free: 501.0 MB)
19/03/14 09:26:32 INFO executor.Executor: Finished task 1.0 in stage 2.0 (TID 9). 1703 bytes result sent to driver
19/03/14 09:26:32 INFO executor.Executor: Finished task 3.0 in stage 2.0 (TID 11). 1703 bytes result sent to driver
19/03/14 09:26:32 INFO executor.Executor: Finished task 0.0 in stage 2.0 (TID 8). 1703 bytes result sent to driver
19/03/14 09:26:32 INFO executor.Executor: Finished task 2.0 in stage 2.0 (TID 10). 1703 bytes result sent to driver
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 2.0 (TID 9) in 11 ms on localhost (1/4)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 2.0 (TID 11) in 10 ms on localhost (2/4)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 2.0 (TID 8) in 11 ms on localhost (3/4)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 2.0 (TID 10) in 11 ms on localhost (4/4)
19/03/14 09:26:32 INFO scheduler.DAGScheduler: ResultStage 2 (count at PanelBases.scala:68) finished in 0.012 s
19/03/14 09:26:32 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 2.0, whose tasks have all completed, from pool 
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Job 1 finished: count at PanelBases.scala:68, took 0.043583 s
19/03/14 09:26:32 INFO spark.SparkContext: Starting job: count at PanelBases.scala:69
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Registering RDD 2 (flatMap at PanelBases.scala:46)
19/03/14 09:26:32 INFO spark.MapOutputTrackerMaster: Size of output statuses for shuffle 0 is 158 bytes
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Registering RDD 6 (distinct at PanelBases.scala:59)
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Got job 2 (count at PanelBases.scala:69) with 4 output partitions
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Final stage: ResultStage 6 (count at PanelBases.scala:69)
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 5, ShuffleMapStage 3)
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Missing parents: List(ShuffleMapStage 5, ShuffleMapStage 3)
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 3 (MapPartitionsRDD[2] at flatMap at PanelBases.scala:46), which has no missing parents
19/03/14 09:26:32 INFO storage.MemoryStore: Block broadcast_3 stored as values in memory (estimated size 2.6 KB, free 32.3 KB)
19/03/14 09:26:32 INFO storage.MemoryStore: Block broadcast_3_piece0 stored as bytes in memory (estimated size 1633.0 B, free 33.9 KB)
19/03/14 09:26:32 INFO storage.BlockManagerInfo: Added broadcast_3_piece0 in memory on localhost:38404 (size: 1633.0 B, free: 501.0 MB)
19/03/14 09:26:32 INFO spark.SparkContext: Created broadcast 3 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 3 (MapPartitionsRDD[2] at flatMap at PanelBases.scala:46)
19/03/14 09:26:32 INFO scheduler.TaskSchedulerImpl: Adding task set 3.0 with 4 tasks
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 5 (MapPartitionsRDD[6] at distinct at PanelBases.scala:59), which has no missing parents
19/03/14 09:26:32 INFO storage.MemoryStore: Block broadcast_4 stored as values in memory (estimated size 3.2 KB, free 37.1 KB)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 3.0 (TID 12, localhost, partition 0,PROCESS_LOCAL, 2004 bytes)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 3.0 (TID 13, localhost, partition 1,PROCESS_LOCAL, 2004 bytes)
19/03/14 09:26:32 INFO storage.MemoryStore: Block broadcast_4_piece0 stored as bytes in memory (estimated size 1931.0 B, free 39.0 KB)
19/03/14 09:26:32 INFO storage.BlockManagerInfo: Added broadcast_4_piece0 in memory on localhost:38404 (size: 1931.0 B, free: 501.0 MB)
19/03/14 09:26:32 INFO spark.SparkContext: Created broadcast 4 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 5 (MapPartitionsRDD[6] at distinct at PanelBases.scala:59)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 3.0 (TID 14, localhost, partition 2,PROCESS_LOCAL, 2004 bytes)
19/03/14 09:26:32 INFO scheduler.TaskSchedulerImpl: Adding task set 5.0 with 4 tasks
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 3.0 (TID 15, localhost, partition 3,PROCESS_LOCAL, 2039 bytes)
19/03/14 09:26:32 INFO executor.Executor: Running task 0.0 in stage 3.0 (TID 12)
19/03/14 09:26:32 INFO executor.Executor: Running task 3.0 in stage 3.0 (TID 15)
19/03/14 09:26:32 INFO executor.Executor: Running task 1.0 in stage 3.0 (TID 13)
19/03/14 09:26:32 INFO executor.Executor: Running task 2.0 in stage 3.0 (TID 14)
19/03/14 09:26:32 INFO storage.BlockManager: Found block rdd_2_0 locally
19/03/14 09:26:32 INFO storage.BlockManager: Found block rdd_2_2 locally
19/03/14 09:26:32 INFO storage.BlockManager: Found block rdd_2_3 locally
19/03/14 09:26:32 INFO storage.BlockManager: Found block rdd_2_1 locally
19/03/14 09:26:32 INFO executor.Executor: Finished task 2.0 in stage 3.0 (TID 14). 2240 bytes result sent to driver
19/03/14 09:26:32 INFO executor.Executor: Finished task 0.0 in stage 3.0 (TID 12). 2240 bytes result sent to driver
19/03/14 09:26:32 INFO executor.Executor: Finished task 1.0 in stage 3.0 (TID 13). 2240 bytes result sent to driver
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 5.0 (TID 16, localhost, partition 0,PROCESS_LOCAL, 1883 bytes)
19/03/14 09:26:32 INFO executor.Executor: Running task 0.0 in stage 5.0 (TID 16)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 5.0 (TID 17, localhost, partition 1,PROCESS_LOCAL, 1883 bytes)
19/03/14 09:26:32 INFO executor.Executor: Running task 1.0 in stage 5.0 (TID 17)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 5.0 (TID 18, localhost, partition 2,PROCESS_LOCAL, 1883 bytes)
19/03/14 09:26:32 INFO storage.BlockManager: Found block rdd_6_0 locally
19/03/14 09:26:32 INFO executor.Executor: Running task 2.0 in stage 5.0 (TID 18)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 3.0 (TID 14) in 9 ms on localhost (1/4)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 3.0 (TID 12) in 12 ms on localhost (2/4)
19/03/14 09:26:32 INFO storage.BlockManager: Found block rdd_6_1 locally
19/03/14 09:26:32 INFO storage.BlockManager: Found block rdd_6_2 locally
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 3.0 (TID 13) in 11 ms on localhost (3/4)
19/03/14 09:26:32 INFO executor.Executor: Finished task 3.0 in stage 3.0 (TID 15). 2240 bytes result sent to driver
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 5.0 (TID 19, localhost, partition 3,PROCESS_LOCAL, 1883 bytes)
19/03/14 09:26:32 INFO executor.Executor: Running task 3.0 in stage 5.0 (TID 19)
19/03/14 09:26:32 INFO storage.BlockManager: Found block rdd_6_3 locally
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 3.0 (TID 15) in 14 ms on localhost (4/4)
19/03/14 09:26:32 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 3.0, whose tasks have all completed, from pool 
19/03/14 09:26:32 INFO scheduler.DAGScheduler: ShuffleMapStage 3 (flatMap at PanelBases.scala:46) finished in 0.018 s
19/03/14 09:26:32 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:32 INFO scheduler.DAGScheduler: running: Set(ShuffleMapStage 5)
19/03/14 09:26:32 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 6)
19/03/14 09:26:32 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:32 INFO executor.Executor: Finished task 0.0 in stage 5.0 (TID 16). 2240 bytes result sent to driver
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 5.0 (TID 16) in 11 ms on localhost (1/4)
19/03/14 09:26:32 INFO executor.Executor: Finished task 1.0 in stage 5.0 (TID 17). 2240 bytes result sent to driver
19/03/14 09:26:32 INFO executor.Executor: Finished task 2.0 in stage 5.0 (TID 18). 2240 bytes result sent to driver
19/03/14 09:26:32 INFO executor.Executor: Finished task 3.0 in stage 5.0 (TID 19). 2240 bytes result sent to driver
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 5.0 (TID 17) in 14 ms on localhost (2/4)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 5.0 (TID 18) in 13 ms on localhost (3/4)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 5.0 (TID 19) in 9 ms on localhost (4/4)
19/03/14 09:26:32 INFO scheduler.DAGScheduler: ShuffleMapStage 5 (distinct at PanelBases.scala:59) finished in 0.020 s
19/03/14 09:26:32 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 5.0, whose tasks have all completed, from pool 
19/03/14 09:26:32 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:32 INFO scheduler.DAGScheduler: running: Set()
19/03/14 09:26:32 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 6)
19/03/14 09:26:32 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Submitting ResultStage 6 (MapPartitionsRDD[10] at filter at PanelBases.scala:64), which has no missing parents
19/03/14 09:26:32 INFO storage.MemoryStore: Block broadcast_5 stored as values in memory (estimated size 3.4 KB, free 42.4 KB)
19/03/14 09:26:32 INFO storage.MemoryStore: Block broadcast_5_piece0 stored as bytes in memory (estimated size 1980.0 B, free 44.4 KB)
19/03/14 09:26:32 INFO storage.BlockManagerInfo: Added broadcast_5_piece0 in memory on localhost:38404 (size: 1980.0 B, free: 501.0 MB)
19/03/14 09:26:32 INFO spark.SparkContext: Created broadcast 5 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ResultStage 6 (MapPartitionsRDD[10] at filter at PanelBases.scala:64)
19/03/14 09:26:32 INFO scheduler.TaskSchedulerImpl: Adding task set 6.0 with 4 tasks
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 6.0 (TID 20, localhost, partition 0,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 6.0 (TID 21, localhost, partition 1,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 6.0 (TID 22, localhost, partition 2,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 6.0 (TID 23, localhost, partition 3,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:32 INFO executor.Executor: Running task 0.0 in stage 6.0 (TID 20)
19/03/14 09:26:32 INFO executor.Executor: Running task 3.0 in stage 6.0 (TID 23)
19/03/14 09:26:32 INFO executor.Executor: Running task 2.0 in stage 6.0 (TID 22)
19/03/14 09:26:32 INFO executor.Executor: Running task 1.0 in stage 6.0 (TID 21)
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 1 ms
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 1 ms
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Getting 4 non-empty blocks out of 4 blocks
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Getting 4 non-empty blocks out of 4 blocks
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Getting 4 non-empty blocks out of 4 blocks
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Getting 4 non-empty blocks out of 4 blocks
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:32 INFO executor.Executor: Finished task 3.0 in stage 6.0 (TID 23). 1123 bytes result sent to driver
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 6.0 (TID 23) in 8 ms on localhost (1/4)
19/03/14 09:26:32 INFO executor.Executor: Finished task 1.0 in stage 6.0 (TID 21). 1123 bytes result sent to driver
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 6.0 (TID 21) in 12 ms on localhost (2/4)
19/03/14 09:26:32 INFO executor.Executor: Finished task 0.0 in stage 6.0 (TID 20). 1123 bytes result sent to driver
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 6.0 (TID 20) in 15 ms on localhost (3/4)
19/03/14 09:26:32 INFO executor.Executor: Finished task 2.0 in stage 6.0 (TID 22). 1123 bytes result sent to driver
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 6.0 (TID 22) in 18 ms on localhost (4/4)
19/03/14 09:26:32 INFO scheduler.DAGScheduler: ResultStage 6 (count at PanelBases.scala:69) finished in 0.018 s
19/03/14 09:26:32 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 6.0, whose tasks have all completed, from pool 
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Job 2 finished: count at PanelBases.scala:69, took 0.056908 s
19/03/14 09:26:32 INFO rdd.MapPartitionsRDD: Removing RDD 2 from persistence list
19/03/14 09:26:32 INFO storage.BlockManager: Removing RDD 2
19/03/14 09:26:32 INFO rdd.MapPartitionsRDD: Removing RDD 6 from persistence list
19/03/14 09:26:32 INFO storage.BlockManager: Removing RDD 6
19/03/14 09:26:32 INFO spark.MapOutputTrackerMasterEndpoint: MapOutputTrackerMasterEndpoint stopped!
19/03/14 09:26:32 INFO storage.MemoryStore: MemoryStore cleared
19/03/14 09:26:32 INFO storage.BlockManager: BlockManager stopped
19/03/14 09:26:32 INFO storage.BlockManagerMaster: BlockManagerMaster stopped
19/03/14 09:26:32 INFO scheduler.OutputCommitCoordinator$OutputCommitCoordinatorEndpoint: OutputCommitCoordinator stopped!
19/03/14 09:26:32 INFO remote.RemoteActorRefProvider$RemotingTerminator: Shutting down remote daemon.
19/03/14 09:26:32 INFO remote.RemoteActorRefProvider$RemotingTerminator: Remote daemon shut down; proceeding with flushing remote transports.
19/03/14 09:26:32 INFO spark.SparkContext: Successfully stopped SparkContext
- compute coverage for a panel with one bait and one target
19/03/14 09:26:32 INFO spark.SparkContext: Running Spark version 1.6.1
19/03/14 09:26:32 INFO remote.RemoteActorRefProvider$RemotingTerminator: Remoting shut down.
19/03/14 09:26:32 INFO spark.SecurityManager: Changing view acls to: jenkins
19/03/14 09:26:32 INFO spark.SecurityManager: Changing modify acls to: jenkins
19/03/14 09:26:32 INFO spark.SecurityManager: SecurityManager: authentication disabled; ui acls disabled; users with view permissions: Set(jenkins); users with modify permissions: Set(jenkins)
19/03/14 09:26:32 INFO util.Utils: Successfully started service 'sparkDriver' on port 51363.
19/03/14 09:26:32 INFO slf4j.Slf4jLogger: Slf4jLogger started
19/03/14 09:26:32 INFO Remoting: Starting remoting
19/03/14 09:26:32 INFO Remoting: Remoting started; listening on addresses :[akka.tcp://sparkDriverActorSystem@localhost:51364]
19/03/14 09:26:32 INFO util.Utils: Successfully started service 'sparkDriverActorSystem' on port 51364.
19/03/14 09:26:32 INFO spark.SparkEnv: Registering MapOutputTracker
19/03/14 09:26:32 INFO spark.SparkEnv: Registering BlockManagerMaster
19/03/14 09:26:32 INFO storage.DiskBlockManager: Created local directory at /tmp/blockmgr-02ab7c44-9a87-4c36-bc54-0e6d2e60950b
19/03/14 09:26:32 INFO storage.MemoryStore: MemoryStore started with capacity 501.0 MB
19/03/14 09:26:32 INFO spark.SparkEnv: Registering OutputCommitCoordinator
19/03/14 09:26:32 INFO executor.Executor: Starting executor ID driver on host localhost
19/03/14 09:26:32 INFO util.Utils: Successfully started service 'org.apache.spark.network.netty.NettyBlockTransferService' on port 39737.
19/03/14 09:26:32 INFO netty.NettyBlockTransferService: Server created on 39737
19/03/14 09:26:32 INFO storage.BlockManagerMaster: Trying to register BlockManager
19/03/14 09:26:32 INFO storage.BlockManagerMasterEndpoint: Registering block manager localhost:39737 with 501.0 MB RAM, BlockManagerId(driver, localhost, 39737)
19/03/14 09:26:32 INFO storage.BlockManagerMaster: Registered BlockManager
19/03/14 09:26:32 INFO spark.SparkContext: Starting job: count at PanelBases.scala:67
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Got job 0 (count at PanelBases.scala:67) with 4 output partitions
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Final stage: ResultStage 0 (count at PanelBases.scala:67)
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Parents of final stage: List()
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Missing parents: List()
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Submitting ResultStage 0 (MapPartitionsRDD[2] at flatMap at PanelBases.scala:46), which has no missing parents
19/03/14 09:26:32 INFO storage.MemoryStore: Block broadcast_0 stored as values in memory (estimated size 1840.0 B, free 1840.0 B)
19/03/14 09:26:32 INFO storage.MemoryStore: Block broadcast_0_piece0 stored as bytes in memory (estimated size 1207.0 B, free 3.0 KB)
19/03/14 09:26:32 INFO storage.BlockManagerInfo: Added broadcast_0_piece0 in memory on localhost:39737 (size: 1207.0 B, free: 501.0 MB)
19/03/14 09:26:32 INFO spark.SparkContext: Created broadcast 0 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ResultStage 0 (MapPartitionsRDD[2] at flatMap at PanelBases.scala:46)
19/03/14 09:26:32 INFO scheduler.TaskSchedulerImpl: Adding task set 0.0 with 4 tasks
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 0.0 (TID 0, localhost, partition 0,PROCESS_LOCAL, 2015 bytes)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 0.0 (TID 1, localhost, partition 1,PROCESS_LOCAL, 2015 bytes)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 0.0 (TID 2, localhost, partition 2,PROCESS_LOCAL, 2015 bytes)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 0.0 (TID 3, localhost, partition 3,PROCESS_LOCAL, 2050 bytes)
19/03/14 09:26:32 INFO executor.Executor: Running task 0.0 in stage 0.0 (TID 0)
19/03/14 09:26:32 INFO executor.Executor: Running task 1.0 in stage 0.0 (TID 1)
19/03/14 09:26:32 INFO executor.Executor: Running task 2.0 in stage 0.0 (TID 2)
19/03/14 09:26:32 INFO executor.Executor: Running task 3.0 in stage 0.0 (TID 3)
19/03/14 09:26:32 INFO spark.CacheManager: Partition rdd_2_2 not found, computing it
19/03/14 09:26:32 INFO spark.CacheManager: Partition rdd_2_1 not found, computing it
19/03/14 09:26:32 INFO spark.CacheManager: Partition rdd_2_0 not found, computing it
19/03/14 09:26:32 INFO storage.MemoryStore: Block rdd_2_2 stored as values in memory (estimated size 16.0 B, free 3.0 KB)
19/03/14 09:26:32 INFO spark.CacheManager: Partition rdd_2_3 not found, computing it
19/03/14 09:26:32 INFO storage.MemoryStore: Block rdd_2_1 stored as values in memory (estimated size 16.0 B, free 3.0 KB)
19/03/14 09:26:32 INFO storage.BlockManagerInfo: Added rdd_2_2 in memory on localhost:39737 (size: 16.0 B, free: 501.0 MB)
19/03/14 09:26:32 INFO storage.MemoryStore: Block rdd_2_0 stored as values in memory (estimated size 16.0 B, free 3.0 KB)
19/03/14 09:26:32 INFO storage.BlockManagerInfo: Added rdd_2_1 in memory on localhost:39737 (size: 16.0 B, free: 501.0 MB)
19/03/14 09:26:32 INFO storage.BlockManagerInfo: Added rdd_2_0 in memory on localhost:39737 (size: 16.0 B, free: 501.0 MB)
19/03/14 09:26:32 INFO storage.MemoryStore: Block rdd_2_3 stored as values in memory (estimated size 5.5 KB, free 8.5 KB)
19/03/14 09:26:32 INFO executor.Executor: Finished task 1.0 in stage 0.0 (TID 1). 1487 bytes result sent to driver
19/03/14 09:26:32 INFO executor.Executor: Finished task 2.0 in stage 0.0 (TID 2). 1487 bytes result sent to driver
19/03/14 09:26:32 INFO storage.BlockManagerInfo: Added rdd_2_3 in memory on localhost:39737 (size: 5.5 KB, free: 501.0 MB)
19/03/14 09:26:32 INFO executor.Executor: Finished task 0.0 in stage 0.0 (TID 0). 1487 bytes result sent to driver
19/03/14 09:26:32 INFO executor.Executor: Finished task 3.0 in stage 0.0 (TID 3). 1488 bytes result sent to driver
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 0.0 (TID 1) in 13 ms on localhost (1/4)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 0.0 (TID 2) in 12 ms on localhost (2/4)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 0.0 (TID 0) in 15 ms on localhost (3/4)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 0.0 (TID 3) in 12 ms on localhost (4/4)
19/03/14 09:26:32 INFO scheduler.DAGScheduler: ResultStage 0 (count at PanelBases.scala:67) finished in 0.017 s
19/03/14 09:26:32 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 0.0, whose tasks have all completed, from pool 
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Job 0 finished: count at PanelBases.scala:67, took 0.023292 s
19/03/14 09:26:32 INFO spark.SparkContext: Starting job: count at PanelBases.scala:68
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Registering RDD 4 (distinct at PanelBases.scala:59)
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Got job 1 (count at PanelBases.scala:68) with 4 output partitions
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Final stage: ResultStage 2 (count at PanelBases.scala:68)
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 1)
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Missing parents: List(ShuffleMapStage 1)
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 1 (MapPartitionsRDD[4] at distinct at PanelBases.scala:59), which has no missing parents
19/03/14 09:26:32 INFO storage.MemoryStore: Block broadcast_1 stored as values in memory (estimated size 2.9 KB, free 11.4 KB)
19/03/14 09:26:32 INFO storage.MemoryStore: Block broadcast_1_piece0 stored as bytes in memory (estimated size 1761.0 B, free 13.1 KB)
19/03/14 09:26:32 INFO storage.BlockManagerInfo: Added broadcast_1_piece0 in memory on localhost:39737 (size: 1761.0 B, free: 501.0 MB)
19/03/14 09:26:32 INFO spark.SparkContext: Created broadcast 1 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 1 (MapPartitionsRDD[4] at distinct at PanelBases.scala:59)
19/03/14 09:26:32 INFO scheduler.TaskSchedulerImpl: Adding task set 1.0 with 4 tasks
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 1.0 (TID 4, localhost, partition 0,PROCESS_LOCAL, 2004 bytes)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 1.0 (TID 5, localhost, partition 1,PROCESS_LOCAL, 2039 bytes)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 1.0 (TID 6, localhost, partition 2,PROCESS_LOCAL, 2004 bytes)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 1.0 (TID 7, localhost, partition 3,PROCESS_LOCAL, 2039 bytes)
19/03/14 09:26:32 INFO executor.Executor: Running task 2.0 in stage 1.0 (TID 6)
19/03/14 09:26:32 INFO executor.Executor: Running task 0.0 in stage 1.0 (TID 4)
19/03/14 09:26:32 INFO executor.Executor: Running task 1.0 in stage 1.0 (TID 5)
19/03/14 09:26:32 INFO executor.Executor: Running task 3.0 in stage 1.0 (TID 7)
19/03/14 09:26:32 INFO executor.Executor: Finished task 2.0 in stage 1.0 (TID 6). 1090 bytes result sent to driver
19/03/14 09:26:32 INFO executor.Executor: Finished task 0.0 in stage 1.0 (TID 4). 1090 bytes result sent to driver
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 1.0 (TID 6) in 10 ms on localhost (1/4)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 1.0 (TID 4) in 13 ms on localhost (2/4)
19/03/14 09:26:32 INFO executor.Executor: Finished task 3.0 in stage 1.0 (TID 7). 1090 bytes result sent to driver
19/03/14 09:26:32 INFO executor.Executor: Finished task 1.0 in stage 1.0 (TID 5). 1090 bytes result sent to driver
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 1.0 (TID 7) in 12 ms on localhost (3/4)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 1.0 (TID 5) in 15 ms on localhost (4/4)
19/03/14 09:26:32 INFO scheduler.DAGScheduler: ShuffleMapStage 1 (distinct at PanelBases.scala:59) finished in 0.017 s
19/03/14 09:26:32 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 1.0, whose tasks have all completed, from pool 
19/03/14 09:26:32 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:32 INFO scheduler.DAGScheduler: running: Set()
19/03/14 09:26:32 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 2)
19/03/14 09:26:32 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Submitting ResultStage 2 (MapPartitionsRDD[6] at distinct at PanelBases.scala:59), which has no missing parents
19/03/14 09:26:32 INFO storage.MemoryStore: Block broadcast_2 stored as values in memory (estimated size 3.1 KB, free 16.2 KB)
19/03/14 09:26:32 INFO storage.MemoryStore: Block broadcast_2_piece0 stored as bytes in memory (estimated size 1840.0 B, free 18.0 KB)
19/03/14 09:26:32 INFO storage.BlockManagerInfo: Added broadcast_2_piece0 in memory on localhost:39737 (size: 1840.0 B, free: 501.0 MB)
19/03/14 09:26:32 INFO spark.SparkContext: Created broadcast 2 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ResultStage 2 (MapPartitionsRDD[6] at distinct at PanelBases.scala:59)
19/03/14 09:26:32 INFO scheduler.TaskSchedulerImpl: Adding task set 2.0 with 4 tasks
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 2.0 (TID 8, localhost, partition 0,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 2.0 (TID 9, localhost, partition 1,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 2.0 (TID 10, localhost, partition 2,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 2.0 (TID 11, localhost, partition 3,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:32 INFO executor.Executor: Running task 1.0 in stage 2.0 (TID 9)
19/03/14 09:26:32 INFO executor.Executor: Running task 3.0 in stage 2.0 (TID 11)
19/03/14 09:26:32 INFO executor.Executor: Running task 0.0 in stage 2.0 (TID 8)
19/03/14 09:26:32 INFO executor.Executor: Running task 2.0 in stage 2.0 (TID 10)
19/03/14 09:26:32 INFO spark.CacheManager: Partition rdd_6_3 not found, computing it
19/03/14 09:26:32 INFO spark.CacheManager: Partition rdd_6_1 not found, computing it
19/03/14 09:26:32 INFO spark.CacheManager: Partition rdd_6_0 not found, computing it
19/03/14 09:26:32 INFO spark.CacheManager: Partition rdd_6_2 not found, computing it
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Getting 2 non-empty blocks out of 4 blocks
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Getting 2 non-empty blocks out of 4 blocks
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Getting 2 non-empty blocks out of 4 blocks
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Getting 2 non-empty blocks out of 4 blocks
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 1 ms
19/03/14 09:26:32 INFO storage.MemoryStore: Block rdd_6_1 stored as values in memory (estimated size 2.5 KB, free 20.5 KB)
19/03/14 09:26:32 INFO storage.MemoryStore: Block rdd_6_3 stored as values in memory (estimated size 2.7 KB, free 23.2 KB)
19/03/14 09:26:32 INFO storage.BlockManagerInfo: Added rdd_6_1 in memory on localhost:39737 (size: 2.5 KB, free: 501.0 MB)
19/03/14 09:26:32 INFO storage.MemoryStore: Block rdd_6_2 stored as values in memory (estimated size 3.2 KB, free 26.4 KB)
19/03/14 09:26:32 INFO storage.BlockManagerInfo: Added rdd_6_3 in memory on localhost:39737 (size: 2.7 KB, free: 501.0 MB)
19/03/14 09:26:32 INFO storage.MemoryStore: Block rdd_6_0 stored as values in memory (estimated size 3.4 KB, free 29.8 KB)
19/03/14 09:26:32 INFO storage.BlockManagerInfo: Added rdd_6_2 in memory on localhost:39737 (size: 3.2 KB, free: 501.0 MB)
19/03/14 09:26:32 INFO storage.BlockManagerInfo: Added rdd_6_0 in memory on localhost:39737 (size: 3.4 KB, free: 501.0 MB)
19/03/14 09:26:32 INFO executor.Executor: Finished task 1.0 in stage 2.0 (TID 9). 1703 bytes result sent to driver
19/03/14 09:26:32 INFO executor.Executor: Finished task 3.0 in stage 2.0 (TID 11). 1703 bytes result sent to driver
19/03/14 09:26:32 INFO executor.Executor: Finished task 2.0 in stage 2.0 (TID 10). 1703 bytes result sent to driver
19/03/14 09:26:32 INFO executor.Executor: Finished task 0.0 in stage 2.0 (TID 8). 1703 bytes result sent to driver
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 2.0 (TID 9) in 11 ms on localhost (1/4)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 2.0 (TID 11) in 11 ms on localhost (2/4)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 2.0 (TID 10) in 11 ms on localhost (3/4)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 2.0 (TID 8) in 12 ms on localhost (4/4)
19/03/14 09:26:32 INFO scheduler.DAGScheduler: ResultStage 2 (count at PanelBases.scala:68) finished in 0.013 s
19/03/14 09:26:32 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 2.0, whose tasks have all completed, from pool 
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Job 1 finished: count at PanelBases.scala:68, took 0.041964 s
19/03/14 09:26:32 INFO spark.SparkContext: Starting job: count at PanelBases.scala:69
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Registering RDD 2 (flatMap at PanelBases.scala:46)
19/03/14 09:26:32 INFO spark.MapOutputTrackerMaster: Size of output statuses for shuffle 0 is 165 bytes
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Registering RDD 6 (distinct at PanelBases.scala:59)
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Got job 2 (count at PanelBases.scala:69) with 4 output partitions
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Final stage: ResultStage 6 (count at PanelBases.scala:69)
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 5, ShuffleMapStage 3)
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Missing parents: List(ShuffleMapStage 5, ShuffleMapStage 3)
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 3 (MapPartitionsRDD[2] at flatMap at PanelBases.scala:46), which has no missing parents
19/03/14 09:26:32 INFO storage.MemoryStore: Block broadcast_3 stored as values in memory (estimated size 2.6 KB, free 32.3 KB)
19/03/14 09:26:32 INFO storage.MemoryStore: Block broadcast_3_piece0 stored as bytes in memory (estimated size 1633.0 B, free 33.9 KB)
19/03/14 09:26:32 INFO storage.BlockManagerInfo: Added broadcast_3_piece0 in memory on localhost:39737 (size: 1633.0 B, free: 501.0 MB)
19/03/14 09:26:32 INFO spark.SparkContext: Created broadcast 3 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 3 (MapPartitionsRDD[2] at flatMap at PanelBases.scala:46)
19/03/14 09:26:32 INFO scheduler.TaskSchedulerImpl: Adding task set 3.0 with 4 tasks
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 5 (MapPartitionsRDD[6] at distinct at PanelBases.scala:59), which has no missing parents
19/03/14 09:26:32 INFO storage.MemoryStore: Block broadcast_4 stored as values in memory (estimated size 3.2 KB, free 37.1 KB)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 3.0 (TID 12, localhost, partition 0,PROCESS_LOCAL, 2004 bytes)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 3.0 (TID 13, localhost, partition 1,PROCESS_LOCAL, 2004 bytes)
19/03/14 09:26:32 INFO storage.MemoryStore: Block broadcast_4_piece0 stored as bytes in memory (estimated size 1931.0 B, free 39.0 KB)
19/03/14 09:26:32 INFO storage.BlockManagerInfo: Added broadcast_4_piece0 in memory on localhost:39737 (size: 1931.0 B, free: 501.0 MB)
19/03/14 09:26:32 INFO spark.SparkContext: Created broadcast 4 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 5 (MapPartitionsRDD[6] at distinct at PanelBases.scala:59)
19/03/14 09:26:32 INFO scheduler.TaskSchedulerImpl: Adding task set 5.0 with 4 tasks
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 3.0 (TID 14, localhost, partition 2,PROCESS_LOCAL, 2004 bytes)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 3.0 (TID 15, localhost, partition 3,PROCESS_LOCAL, 2039 bytes)
19/03/14 09:26:32 INFO executor.Executor: Running task 2.0 in stage 3.0 (TID 14)
19/03/14 09:26:32 INFO executor.Executor: Running task 0.0 in stage 3.0 (TID 12)
19/03/14 09:26:32 INFO executor.Executor: Running task 1.0 in stage 3.0 (TID 13)
19/03/14 09:26:32 INFO executor.Executor: Running task 3.0 in stage 3.0 (TID 15)
19/03/14 09:26:32 INFO storage.BlockManager: Found block rdd_2_2 locally
19/03/14 09:26:32 INFO storage.BlockManager: Found block rdd_2_3 locally
19/03/14 09:26:32 INFO storage.BlockManager: Found block rdd_2_1 locally
19/03/14 09:26:32 INFO storage.BlockManager: Found block rdd_2_0 locally
19/03/14 09:26:32 INFO executor.Executor: Finished task 2.0 in stage 3.0 (TID 14). 2240 bytes result sent to driver
19/03/14 09:26:32 INFO executor.Executor: Finished task 1.0 in stage 3.0 (TID 13). 2240 bytes result sent to driver
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 5.0 (TID 16, localhost, partition 0,PROCESS_LOCAL, 1883 bytes)
19/03/14 09:26:32 INFO executor.Executor: Running task 0.0 in stage 5.0 (TID 16)
19/03/14 09:26:32 INFO executor.Executor: Finished task 0.0 in stage 3.0 (TID 12). 2240 bytes result sent to driver
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 5.0 (TID 17, localhost, partition 1,PROCESS_LOCAL, 1883 bytes)
19/03/14 09:26:32 INFO executor.Executor: Running task 1.0 in stage 5.0 (TID 17)
19/03/14 09:26:32 INFO storage.BlockManager: Found block rdd_6_0 locally
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 5.0 (TID 18, localhost, partition 2,PROCESS_LOCAL, 1883 bytes)
19/03/14 09:26:32 INFO executor.Executor: Running task 2.0 in stage 5.0 (TID 18)
19/03/14 09:26:32 INFO storage.BlockManager: Found block rdd_6_1 locally
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 3.0 (TID 14) in 9 ms on localhost (1/4)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 3.0 (TID 13) in 11 ms on localhost (2/4)
19/03/14 09:26:32 INFO storage.BlockManager: Found block rdd_6_2 locally
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 3.0 (TID 12) in 14 ms on localhost (3/4)
19/03/14 09:26:32 INFO executor.Executor: Finished task 3.0 in stage 3.0 (TID 15). 2240 bytes result sent to driver
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 5.0 (TID 19, localhost, partition 3,PROCESS_LOCAL, 1883 bytes)
19/03/14 09:26:32 INFO executor.Executor: Running task 3.0 in stage 5.0 (TID 19)
19/03/14 09:26:32 INFO storage.BlockManager: Found block rdd_6_3 locally
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 3.0 (TID 15) in 13 ms on localhost (4/4)
19/03/14 09:26:32 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 3.0, whose tasks have all completed, from pool 
19/03/14 09:26:32 INFO scheduler.DAGScheduler: ShuffleMapStage 3 (flatMap at PanelBases.scala:46) finished in 0.017 s
19/03/14 09:26:32 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:32 INFO scheduler.DAGScheduler: running: Set(ShuffleMapStage 5)
19/03/14 09:26:32 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 6)
19/03/14 09:26:32 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:32 INFO executor.Executor: Finished task 2.0 in stage 5.0 (TID 18). 2240 bytes result sent to driver
19/03/14 09:26:32 INFO executor.Executor: Finished task 1.0 in stage 5.0 (TID 17). 2240 bytes result sent to driver
19/03/14 09:26:32 INFO executor.Executor: Finished task 0.0 in stage 5.0 (TID 16). 2240 bytes result sent to driver
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 5.0 (TID 18) in 12 ms on localhost (1/4)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 5.0 (TID 16) in 14 ms on localhost (2/4)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 5.0 (TID 17) in 14 ms on localhost (3/4)
19/03/14 09:26:32 INFO executor.Executor: Finished task 3.0 in stage 5.0 (TID 19). 2240 bytes result sent to driver
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 5.0 (TID 19) in 11 ms on localhost (4/4)
19/03/14 09:26:32 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 5.0, whose tasks have all completed, from pool 
19/03/14 09:26:32 INFO scheduler.DAGScheduler: ShuffleMapStage 5 (distinct at PanelBases.scala:59) finished in 0.021 s
19/03/14 09:26:32 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:32 INFO scheduler.DAGScheduler: running: Set()
19/03/14 09:26:32 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 6)
19/03/14 09:26:32 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Submitting ResultStage 6 (MapPartitionsRDD[10] at filter at PanelBases.scala:64), which has no missing parents
19/03/14 09:26:32 INFO storage.MemoryStore: Block broadcast_5 stored as values in memory (estimated size 3.4 KB, free 42.4 KB)
19/03/14 09:26:32 INFO storage.MemoryStore: Block broadcast_5_piece0 stored as bytes in memory (estimated size 1980.0 B, free 44.4 KB)
19/03/14 09:26:32 INFO storage.BlockManagerInfo: Added broadcast_5_piece0 in memory on localhost:39737 (size: 1980.0 B, free: 501.0 MB)
19/03/14 09:26:32 INFO spark.SparkContext: Created broadcast 5 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ResultStage 6 (MapPartitionsRDD[10] at filter at PanelBases.scala:64)
19/03/14 09:26:32 INFO scheduler.TaskSchedulerImpl: Adding task set 6.0 with 4 tasks
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 6.0 (TID 20, localhost, partition 0,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 6.0 (TID 21, localhost, partition 1,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 6.0 (TID 22, localhost, partition 2,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 6.0 (TID 23, localhost, partition 3,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:32 INFO executor.Executor: Running task 0.0 in stage 6.0 (TID 20)
19/03/14 09:26:32 INFO executor.Executor: Running task 3.0 in stage 6.0 (TID 23)
19/03/14 09:26:32 INFO executor.Executor: Running task 2.0 in stage 6.0 (TID 22)
19/03/14 09:26:32 INFO executor.Executor: Running task 1.0 in stage 6.0 (TID 21)
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Getting 4 non-empty blocks out of 4 blocks
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Getting 4 non-empty blocks out of 4 blocks
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Getting 4 non-empty blocks out of 4 blocks
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Getting 4 non-empty blocks out of 4 blocks
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:32 INFO executor.Executor: Finished task 3.0 in stage 6.0 (TID 23). 1123 bytes result sent to driver
19/03/14 09:26:32 INFO storage.BlockManagerInfo: Removed broadcast_4_piece0 on localhost:39737 in memory (size: 1931.0 B, free: 501.0 MB)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 6.0 (TID 23) in 32 ms on localhost (1/4)
19/03/14 09:26:32 INFO storage.BlockManagerInfo: Removed broadcast_3_piece0 on localhost:39737 in memory (size: 1633.0 B, free: 501.0 MB)
19/03/14 09:26:32 INFO storage.BlockManagerInfo: Removed broadcast_2_piece0 on localhost:39737 in memory (size: 1840.0 B, free: 501.0 MB)
19/03/14 09:26:32 INFO spark.ContextCleaner: Cleaned accumulator 63
19/03/14 09:26:32 INFO storage.BlockManagerInfo: Removed broadcast_1_piece0 on localhost:39737 in memory (size: 1761.0 B, free: 501.0 MB)
19/03/14 09:26:32 INFO spark.ContextCleaner: Cleaned accumulator 62
19/03/14 09:26:32 INFO storage.BlockManagerInfo: Removed broadcast_0_piece0 on localhost:39737 in memory (size: 1207.0 B, free: 501.0 MB)
19/03/14 09:26:32 INFO spark.ContextCleaner: Cleaned accumulator 61
19/03/14 09:26:32 INFO executor.Executor: Finished task 0.0 in stage 6.0 (TID 20). 1123 bytes result sent to driver
19/03/14 09:26:32 INFO executor.Executor: Finished task 1.0 in stage 6.0 (TID 21). 1123 bytes result sent to driver
19/03/14 09:26:32 INFO executor.Executor: Finished task 2.0 in stage 6.0 (TID 22). 1123 bytes result sent to driver
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 6.0 (TID 20) in 39 ms on localhost (2/4)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 6.0 (TID 22) in 39 ms on localhost (3/4)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 6.0 (TID 21) in 39 ms on localhost (4/4)
19/03/14 09:26:32 INFO scheduler.DAGScheduler: ResultStage 6 (count at PanelBases.scala:69) finished in 0.040 s
19/03/14 09:26:32 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 6.0, whose tasks have all completed, from pool 
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Job 2 finished: count at PanelBases.scala:69, took 0.080067 s
19/03/14 09:26:32 INFO rdd.MapPartitionsRDD: Removing RDD 2 from persistence list
19/03/14 09:26:32 INFO storage.BlockManager: Removing RDD 2
19/03/14 09:26:32 INFO rdd.MapPartitionsRDD: Removing RDD 6 from persistence list
19/03/14 09:26:32 INFO storage.BlockManager: Removing RDD 6
19/03/14 09:26:32 INFO spark.MapOutputTrackerMasterEndpoint: MapOutputTrackerMasterEndpoint stopped!
19/03/14 09:26:32 INFO storage.MemoryStore: MemoryStore cleared
19/03/14 09:26:32 INFO storage.BlockManager: BlockManager stopped
19/03/14 09:26:32 INFO storage.BlockManagerMaster: BlockManagerMaster stopped
19/03/14 09:26:32 INFO scheduler.OutputCommitCoordinator$OutputCommitCoordinatorEndpoint: OutputCommitCoordinator stopped!
19/03/14 09:26:32 INFO remote.RemoteActorRefProvider$RemotingTerminator: Shutting down remote daemon.
19/03/14 09:26:32 INFO remote.RemoteActorRefProvider$RemotingTerminator: Remote daemon shut down; proceeding with flushing remote transports.
19/03/14 09:26:32 INFO spark.SparkContext: Successfully stopped SparkContext
- compute coverage for a panel with two baits and one target
19/03/14 09:26:32 INFO spark.SparkContext: Running Spark version 1.6.1
19/03/14 09:26:32 INFO remote.RemoteActorRefProvider$RemotingTerminator: Remoting shut down.
19/03/14 09:26:32 INFO spark.SecurityManager: Changing view acls to: jenkins
19/03/14 09:26:32 INFO spark.SecurityManager: Changing modify acls to: jenkins
19/03/14 09:26:32 INFO spark.SecurityManager: SecurityManager: authentication disabled; ui acls disabled; users with view permissions: Set(jenkins); users with modify permissions: Set(jenkins)
19/03/14 09:26:32 INFO util.Utils: Successfully started service 'sparkDriver' on port 54693.
19/03/14 09:26:32 INFO slf4j.Slf4jLogger: Slf4jLogger started
19/03/14 09:26:32 INFO Remoting: Starting remoting
19/03/14 09:26:32 INFO Remoting: Remoting started; listening on addresses :[akka.tcp://sparkDriverActorSystem@localhost:54694]
19/03/14 09:26:32 INFO util.Utils: Successfully started service 'sparkDriverActorSystem' on port 54694.
19/03/14 09:26:32 INFO spark.SparkEnv: Registering MapOutputTracker
19/03/14 09:26:32 INFO spark.SparkEnv: Registering BlockManagerMaster
19/03/14 09:26:32 INFO storage.DiskBlockManager: Created local directory at /tmp/blockmgr-e5e78acf-9803-4bb8-953c-88103461375c
19/03/14 09:26:32 INFO storage.MemoryStore: MemoryStore started with capacity 500.3 MB
19/03/14 09:26:32 INFO spark.SparkEnv: Registering OutputCommitCoordinator
19/03/14 09:26:32 INFO executor.Executor: Starting executor ID driver on host localhost
19/03/14 09:26:32 INFO util.Utils: Successfully started service 'org.apache.spark.network.netty.NettyBlockTransferService' on port 46243.
19/03/14 09:26:32 INFO netty.NettyBlockTransferService: Server created on 46243
19/03/14 09:26:32 INFO storage.BlockManagerMaster: Trying to register BlockManager
19/03/14 09:26:32 INFO storage.BlockManagerMasterEndpoint: Registering block manager localhost:46243 with 500.3 MB RAM, BlockManagerId(driver, localhost, 46243)
19/03/14 09:26:32 INFO storage.BlockManagerMaster: Registered BlockManager
19/03/14 09:26:32 INFO spark.SparkContext: Starting job: count at PanelBases.scala:67
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Got job 0 (count at PanelBases.scala:67) with 4 output partitions
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Final stage: ResultStage 0 (count at PanelBases.scala:67)
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Parents of final stage: List()
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Missing parents: List()
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Submitting ResultStage 0 (MapPartitionsRDD[2] at flatMap at PanelBases.scala:46), which has no missing parents
19/03/14 09:26:32 INFO storage.MemoryStore: Block broadcast_0 stored as values in memory (estimated size 1840.0 B, free 1840.0 B)
19/03/14 09:26:32 INFO storage.MemoryStore: Block broadcast_0_piece0 stored as bytes in memory (estimated size 1207.0 B, free 3.0 KB)
19/03/14 09:26:32 INFO storage.BlockManagerInfo: Added broadcast_0_piece0 in memory on localhost:46243 (size: 1207.0 B, free: 500.2 MB)
19/03/14 09:26:32 INFO spark.SparkContext: Created broadcast 0 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ResultStage 0 (MapPartitionsRDD[2] at flatMap at PanelBases.scala:46)
19/03/14 09:26:32 INFO scheduler.TaskSchedulerImpl: Adding task set 0.0 with 4 tasks
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 0.0 (TID 0, localhost, partition 0,PROCESS_LOCAL, 2015 bytes)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 0.0 (TID 1, localhost, partition 1,PROCESS_LOCAL, 2015 bytes)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 0.0 (TID 2, localhost, partition 2,PROCESS_LOCAL, 2015 bytes)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 0.0 (TID 3, localhost, partition 3,PROCESS_LOCAL, 2050 bytes)
19/03/14 09:26:32 INFO executor.Executor: Running task 0.0 in stage 0.0 (TID 0)
19/03/14 09:26:32 INFO executor.Executor: Running task 1.0 in stage 0.0 (TID 1)
19/03/14 09:26:32 INFO executor.Executor: Running task 2.0 in stage 0.0 (TID 2)
19/03/14 09:26:32 INFO executor.Executor: Running task 3.0 in stage 0.0 (TID 3)
19/03/14 09:26:32 INFO spark.CacheManager: Partition rdd_2_2 not found, computing it
19/03/14 09:26:32 INFO spark.CacheManager: Partition rdd_2_0 not found, computing it
19/03/14 09:26:32 INFO spark.CacheManager: Partition rdd_2_1 not found, computing it
19/03/14 09:26:32 INFO spark.CacheManager: Partition rdd_2_3 not found, computing it
19/03/14 09:26:32 INFO storage.MemoryStore: Block rdd_2_2 stored as values in memory (estimated size 16.0 B, free 3.0 KB)
19/03/14 09:26:32 INFO storage.BlockManagerInfo: Added rdd_2_2 in memory on localhost:46243 (size: 16.0 B, free: 500.2 MB)
19/03/14 09:26:32 INFO storage.MemoryStore: Block rdd_2_0 stored as values in memory (estimated size 16.0 B, free 3.0 KB)
19/03/14 09:26:32 INFO storage.MemoryStore: Block rdd_2_1 stored as values in memory (estimated size 16.0 B, free 3.0 KB)
19/03/14 09:26:32 INFO storage.BlockManagerInfo: Added rdd_2_0 in memory on localhost:46243 (size: 16.0 B, free: 500.2 MB)
19/03/14 09:26:32 INFO storage.BlockManagerInfo: Added rdd_2_1 in memory on localhost:46243 (size: 16.0 B, free: 500.2 MB)
19/03/14 09:26:32 INFO storage.MemoryStore: Block rdd_2_3 stored as values in memory (estimated size 5.5 KB, free 8.5 KB)
19/03/14 09:26:32 INFO executor.Executor: Finished task 2.0 in stage 0.0 (TID 2). 1487 bytes result sent to driver
19/03/14 09:26:32 INFO storage.BlockManagerInfo: Added rdd_2_3 in memory on localhost:46243 (size: 5.5 KB, free: 500.2 MB)
19/03/14 09:26:32 INFO executor.Executor: Finished task 0.0 in stage 0.0 (TID 0). 1487 bytes result sent to driver
19/03/14 09:26:32 INFO executor.Executor: Finished task 1.0 in stage 0.0 (TID 1). 1487 bytes result sent to driver
19/03/14 09:26:32 INFO executor.Executor: Finished task 3.0 in stage 0.0 (TID 3). 1488 bytes result sent to driver
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 0.0 (TID 2) in 11 ms on localhost (1/4)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 0.0 (TID 0) in 15 ms on localhost (2/4)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 0.0 (TID 1) in 13 ms on localhost (3/4)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 0.0 (TID 3) in 12 ms on localhost (4/4)
19/03/14 09:26:32 INFO scheduler.DAGScheduler: ResultStage 0 (count at PanelBases.scala:67) finished in 0.017 s
19/03/14 09:26:32 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 0.0, whose tasks have all completed, from pool 
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Job 0 finished: count at PanelBases.scala:67, took 0.023921 s
19/03/14 09:26:32 INFO spark.SparkContext: Starting job: count at PanelBases.scala:68
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Registering RDD 4 (distinct at PanelBases.scala:59)
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Got job 1 (count at PanelBases.scala:68) with 4 output partitions
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Final stage: ResultStage 2 (count at PanelBases.scala:68)
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 1)
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Missing parents: List(ShuffleMapStage 1)
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 1 (MapPartitionsRDD[4] at distinct at PanelBases.scala:59), which has no missing parents
19/03/14 09:26:32 INFO storage.MemoryStore: Block broadcast_1 stored as values in memory (estimated size 2.9 KB, free 11.4 KB)
19/03/14 09:26:32 INFO storage.MemoryStore: Block broadcast_1_piece0 stored as bytes in memory (estimated size 1761.0 B, free 13.1 KB)
19/03/14 09:26:32 INFO storage.BlockManagerInfo: Added broadcast_1_piece0 in memory on localhost:46243 (size: 1761.0 B, free: 500.2 MB)
19/03/14 09:26:32 INFO spark.SparkContext: Created broadcast 1 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 1 (MapPartitionsRDD[4] at distinct at PanelBases.scala:59)
19/03/14 09:26:32 INFO scheduler.TaskSchedulerImpl: Adding task set 1.0 with 4 tasks
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 1.0 (TID 4, localhost, partition 0,PROCESS_LOCAL, 2004 bytes)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 1.0 (TID 5, localhost, partition 1,PROCESS_LOCAL, 2039 bytes)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 1.0 (TID 6, localhost, partition 2,PROCESS_LOCAL, 2004 bytes)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 1.0 (TID 7, localhost, partition 3,PROCESS_LOCAL, 2039 bytes)
19/03/14 09:26:32 INFO executor.Executor: Running task 0.0 in stage 1.0 (TID 4)
19/03/14 09:26:32 INFO executor.Executor: Running task 2.0 in stage 1.0 (TID 6)
19/03/14 09:26:32 INFO executor.Executor: Running task 3.0 in stage 1.0 (TID 7)
19/03/14 09:26:32 INFO executor.Executor: Running task 1.0 in stage 1.0 (TID 5)
19/03/14 09:26:32 INFO executor.Executor: Finished task 0.0 in stage 1.0 (TID 4). 1090 bytes result sent to driver
19/03/14 09:26:32 INFO executor.Executor: Finished task 2.0 in stage 1.0 (TID 6). 1090 bytes result sent to driver
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 1.0 (TID 4) in 14 ms on localhost (1/4)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 1.0 (TID 6) in 11 ms on localhost (2/4)
19/03/14 09:26:32 INFO executor.Executor: Finished task 3.0 in stage 1.0 (TID 7). 1090 bytes result sent to driver
19/03/14 09:26:32 INFO executor.Executor: Finished task 1.0 in stage 1.0 (TID 5). 1090 bytes result sent to driver
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 1.0 (TID 7) in 12 ms on localhost (3/4)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 1.0 (TID 5) in 16 ms on localhost (4/4)
19/03/14 09:26:32 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 1.0, whose tasks have all completed, from pool 
19/03/14 09:26:32 INFO scheduler.DAGScheduler: ShuffleMapStage 1 (distinct at PanelBases.scala:59) finished in 0.017 s
19/03/14 09:26:32 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:32 INFO scheduler.DAGScheduler: running: Set()
19/03/14 09:26:32 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 2)
19/03/14 09:26:32 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Submitting ResultStage 2 (MapPartitionsRDD[6] at distinct at PanelBases.scala:59), which has no missing parents
19/03/14 09:26:32 INFO storage.MemoryStore: Block broadcast_2 stored as values in memory (estimated size 3.1 KB, free 16.2 KB)
19/03/14 09:26:32 INFO storage.MemoryStore: Block broadcast_2_piece0 stored as bytes in memory (estimated size 1840.0 B, free 18.0 KB)
19/03/14 09:26:32 INFO storage.BlockManagerInfo: Added broadcast_2_piece0 in memory on localhost:46243 (size: 1840.0 B, free: 500.2 MB)
19/03/14 09:26:32 INFO spark.SparkContext: Created broadcast 2 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ResultStage 2 (MapPartitionsRDD[6] at distinct at PanelBases.scala:59)
19/03/14 09:26:32 INFO scheduler.TaskSchedulerImpl: Adding task set 2.0 with 4 tasks
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 2.0 (TID 8, localhost, partition 0,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 2.0 (TID 9, localhost, partition 1,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 2.0 (TID 10, localhost, partition 2,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 2.0 (TID 11, localhost, partition 3,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:32 INFO executor.Executor: Running task 1.0 in stage 2.0 (TID 9)
19/03/14 09:26:32 INFO executor.Executor: Running task 2.0 in stage 2.0 (TID 10)
19/03/14 09:26:32 INFO executor.Executor: Running task 0.0 in stage 2.0 (TID 8)
19/03/14 09:26:32 INFO executor.Executor: Running task 3.0 in stage 2.0 (TID 11)
19/03/14 09:26:32 INFO spark.CacheManager: Partition rdd_6_3 not found, computing it
19/03/14 09:26:32 INFO spark.CacheManager: Partition rdd_6_1 not found, computing it
19/03/14 09:26:32 INFO spark.CacheManager: Partition rdd_6_0 not found, computing it
19/03/14 09:26:32 INFO spark.CacheManager: Partition rdd_6_2 not found, computing it
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Getting 2 non-empty blocks out of 4 blocks
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Getting 2 non-empty blocks out of 4 blocks
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Getting 2 non-empty blocks out of 4 blocks
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Getting 2 non-empty blocks out of 4 blocks
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:32 INFO storage.MemoryStore: Block rdd_6_3 stored as values in memory (estimated size 2.7 KB, free 20.7 KB)
19/03/14 09:26:32 INFO storage.BlockManagerInfo: Added rdd_6_3 in memory on localhost:46243 (size: 2.7 KB, free: 500.2 MB)
19/03/14 09:26:32 INFO storage.MemoryStore: Block rdd_6_1 stored as values in memory (estimated size 2.5 KB, free 23.2 KB)
19/03/14 09:26:32 INFO storage.BlockManagerInfo: Added rdd_6_1 in memory on localhost:46243 (size: 2.5 KB, free: 500.2 MB)
19/03/14 09:26:32 INFO storage.MemoryStore: Block rdd_6_2 stored as values in memory (estimated size 3.2 KB, free 26.4 KB)
19/03/14 09:26:32 INFO storage.BlockManagerInfo: Added rdd_6_2 in memory on localhost:46243 (size: 3.2 KB, free: 500.2 MB)
19/03/14 09:26:32 INFO storage.MemoryStore: Block rdd_6_0 stored as values in memory (estimated size 3.4 KB, free 29.8 KB)
19/03/14 09:26:32 INFO storage.BlockManagerInfo: Added rdd_6_0 in memory on localhost:46243 (size: 3.4 KB, free: 500.2 MB)
19/03/14 09:26:32 INFO executor.Executor: Finished task 3.0 in stage 2.0 (TID 11). 1703 bytes result sent to driver
19/03/14 09:26:32 INFO executor.Executor: Finished task 1.0 in stage 2.0 (TID 9). 1703 bytes result sent to driver
19/03/14 09:26:32 INFO executor.Executor: Finished task 2.0 in stage 2.0 (TID 10). 1703 bytes result sent to driver
19/03/14 09:26:32 INFO executor.Executor: Finished task 0.0 in stage 2.0 (TID 8). 1703 bytes result sent to driver
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 2.0 (TID 9) in 11 ms on localhost (1/4)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 2.0 (TID 11) in 11 ms on localhost (2/4)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 2.0 (TID 10) in 11 ms on localhost (3/4)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 2.0 (TID 8) in 12 ms on localhost (4/4)
19/03/14 09:26:32 INFO scheduler.DAGScheduler: ResultStage 2 (count at PanelBases.scala:68) finished in 0.012 s
19/03/14 09:26:32 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 2.0, whose tasks have all completed, from pool 
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Job 1 finished: count at PanelBases.scala:68, took 0.045045 s
19/03/14 09:26:32 INFO spark.SparkContext: Starting job: count at PanelBases.scala:69
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Registering RDD 2 (flatMap at PanelBases.scala:46)
19/03/14 09:26:32 INFO spark.MapOutputTrackerMaster: Size of output statuses for shuffle 0 is 165 bytes
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Registering RDD 6 (distinct at PanelBases.scala:59)
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Got job 2 (count at PanelBases.scala:69) with 4 output partitions
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Final stage: ResultStage 6 (count at PanelBases.scala:69)
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 5, ShuffleMapStage 3)
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Missing parents: List(ShuffleMapStage 5, ShuffleMapStage 3)
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 3 (MapPartitionsRDD[2] at flatMap at PanelBases.scala:46), which has no missing parents
19/03/14 09:26:32 INFO storage.MemoryStore: Block broadcast_3 stored as values in memory (estimated size 2.6 KB, free 32.3 KB)
19/03/14 09:26:32 INFO storage.MemoryStore: Block broadcast_3_piece0 stored as bytes in memory (estimated size 1633.0 B, free 33.9 KB)
19/03/14 09:26:32 INFO storage.BlockManagerInfo: Added broadcast_3_piece0 in memory on localhost:46243 (size: 1633.0 B, free: 500.2 MB)
19/03/14 09:26:32 INFO spark.SparkContext: Created broadcast 3 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 3 (MapPartitionsRDD[2] at flatMap at PanelBases.scala:46)
19/03/14 09:26:32 INFO scheduler.TaskSchedulerImpl: Adding task set 3.0 with 4 tasks
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 5 (MapPartitionsRDD[6] at distinct at PanelBases.scala:59), which has no missing parents
19/03/14 09:26:32 INFO storage.MemoryStore: Block broadcast_4 stored as values in memory (estimated size 3.2 KB, free 37.1 KB)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 3.0 (TID 12, localhost, partition 0,PROCESS_LOCAL, 2004 bytes)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 3.0 (TID 13, localhost, partition 1,PROCESS_LOCAL, 2004 bytes)
19/03/14 09:26:32 INFO storage.MemoryStore: Block broadcast_4_piece0 stored as bytes in memory (estimated size 1931.0 B, free 39.0 KB)
19/03/14 09:26:32 INFO storage.BlockManagerInfo: Added broadcast_4_piece0 in memory on localhost:46243 (size: 1931.0 B, free: 500.2 MB)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 3.0 (TID 14, localhost, partition 2,PROCESS_LOCAL, 2004 bytes)
19/03/14 09:26:32 INFO spark.SparkContext: Created broadcast 4 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 5 (MapPartitionsRDD[6] at distinct at PanelBases.scala:59)
19/03/14 09:26:32 INFO scheduler.TaskSchedulerImpl: Adding task set 5.0 with 4 tasks
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 3.0 (TID 15, localhost, partition 3,PROCESS_LOCAL, 2039 bytes)
19/03/14 09:26:32 INFO executor.Executor: Running task 3.0 in stage 3.0 (TID 15)
19/03/14 09:26:32 INFO executor.Executor: Running task 1.0 in stage 3.0 (TID 13)
19/03/14 09:26:32 INFO executor.Executor: Running task 2.0 in stage 3.0 (TID 14)
19/03/14 09:26:32 INFO executor.Executor: Running task 0.0 in stage 3.0 (TID 12)
19/03/14 09:26:32 INFO storage.BlockManager: Found block rdd_2_1 locally
19/03/14 09:26:32 INFO storage.BlockManager: Found block rdd_2_3 locally
19/03/14 09:26:32 INFO storage.BlockManager: Found block rdd_2_0 locally
19/03/14 09:26:32 INFO storage.BlockManager: Found block rdd_2_2 locally
19/03/14 09:26:32 INFO executor.Executor: Finished task 1.0 in stage 3.0 (TID 13). 2240 bytes result sent to driver
19/03/14 09:26:32 INFO executor.Executor: Finished task 0.0 in stage 3.0 (TID 12). 2240 bytes result sent to driver
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 5.0 (TID 16, localhost, partition 0,PROCESS_LOCAL, 1883 bytes)
19/03/14 09:26:32 INFO executor.Executor: Running task 0.0 in stage 5.0 (TID 16)
19/03/14 09:26:32 INFO executor.Executor: Finished task 2.0 in stage 3.0 (TID 14). 2240 bytes result sent to driver
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 5.0 (TID 17, localhost, partition 1,PROCESS_LOCAL, 1883 bytes)
19/03/14 09:26:32 INFO executor.Executor: Running task 1.0 in stage 5.0 (TID 17)
19/03/14 09:26:32 INFO storage.BlockManager: Found block rdd_6_0 locally
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 5.0 (TID 18, localhost, partition 2,PROCESS_LOCAL, 1883 bytes)
19/03/14 09:26:32 INFO executor.Executor: Running task 2.0 in stage 5.0 (TID 18)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 3.0 (TID 13) in 9 ms on localhost (1/4)
19/03/14 09:26:32 INFO storage.BlockManager: Found block rdd_6_1 locally
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 3.0 (TID 12) in 10 ms on localhost (2/4)
19/03/14 09:26:32 INFO storage.BlockManager: Found block rdd_6_2 locally
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 3.0 (TID 14) in 9 ms on localhost (3/4)
19/03/14 09:26:32 INFO executor.Executor: Finished task 3.0 in stage 3.0 (TID 15). 2240 bytes result sent to driver
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 5.0 (TID 19, localhost, partition 3,PROCESS_LOCAL, 1883 bytes)
19/03/14 09:26:32 INFO executor.Executor: Running task 3.0 in stage 5.0 (TID 19)
19/03/14 09:26:32 INFO storage.BlockManager: Found block rdd_6_3 locally
19/03/14 09:26:32 INFO executor.Executor: Finished task 0.0 in stage 5.0 (TID 16). 2240 bytes result sent to driver
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 3.0 (TID 15) in 14 ms on localhost (4/4)
19/03/14 09:26:32 INFO scheduler.DAGScheduler: ShuffleMapStage 3 (flatMap at PanelBases.scala:46) finished in 0.018 s
19/03/14 09:26:32 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:32 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 3.0, whose tasks have all completed, from pool 
19/03/14 09:26:32 INFO scheduler.DAGScheduler: running: Set(ShuffleMapStage 5)
19/03/14 09:26:32 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 6)
19/03/14 09:26:32 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 5.0 (TID 16) in 10 ms on localhost (1/4)
19/03/14 09:26:32 INFO executor.Executor: Finished task 1.0 in stage 5.0 (TID 17). 2240 bytes result sent to driver
19/03/14 09:26:32 INFO executor.Executor: Finished task 2.0 in stage 5.0 (TID 18). 2240 bytes result sent to driver
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 5.0 (TID 17) in 14 ms on localhost (2/4)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 5.0 (TID 18) in 13 ms on localhost (3/4)
19/03/14 09:26:32 INFO executor.Executor: Finished task 3.0 in stage 5.0 (TID 19). 2240 bytes result sent to driver
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 5.0 (TID 19) in 11 ms on localhost (4/4)
19/03/14 09:26:32 INFO scheduler.DAGScheduler: ShuffleMapStage 5 (distinct at PanelBases.scala:59) finished in 0.021 s
19/03/14 09:26:32 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 5.0, whose tasks have all completed, from pool 
19/03/14 09:26:32 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:32 INFO scheduler.DAGScheduler: running: Set()
19/03/14 09:26:32 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 6)
19/03/14 09:26:32 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Submitting ResultStage 6 (MapPartitionsRDD[10] at filter at PanelBases.scala:64), which has no missing parents
19/03/14 09:26:32 INFO storage.MemoryStore: Block broadcast_5 stored as values in memory (estimated size 3.4 KB, free 42.4 KB)
19/03/14 09:26:32 INFO storage.MemoryStore: Block broadcast_5_piece0 stored as bytes in memory (estimated size 1980.0 B, free 44.4 KB)
19/03/14 09:26:32 INFO storage.BlockManagerInfo: Added broadcast_5_piece0 in memory on localhost:46243 (size: 1980.0 B, free: 500.2 MB)
19/03/14 09:26:32 INFO spark.SparkContext: Created broadcast 5 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ResultStage 6 (MapPartitionsRDD[10] at filter at PanelBases.scala:64)
19/03/14 09:26:32 INFO scheduler.TaskSchedulerImpl: Adding task set 6.0 with 4 tasks
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 6.0 (TID 20, localhost, partition 0,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 6.0 (TID 21, localhost, partition 1,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 6.0 (TID 22, localhost, partition 2,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 6.0 (TID 23, localhost, partition 3,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:32 INFO executor.Executor: Running task 0.0 in stage 6.0 (TID 20)
19/03/14 09:26:32 INFO executor.Executor: Running task 3.0 in stage 6.0 (TID 23)
19/03/14 09:26:32 INFO executor.Executor: Running task 1.0 in stage 6.0 (TID 21)
19/03/14 09:26:32 INFO executor.Executor: Running task 2.0 in stage 6.0 (TID 22)
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 1 ms
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Getting 4 non-empty blocks out of 4 blocks
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Getting 4 non-empty blocks out of 4 blocks
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Getting 4 non-empty blocks out of 4 blocks
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Getting 4 non-empty blocks out of 4 blocks
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:32 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:32 INFO executor.Executor: Finished task 3.0 in stage 6.0 (TID 23). 1123 bytes result sent to driver
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 6.0 (TID 23) in 9 ms on localhost (1/4)
19/03/14 09:26:32 INFO executor.Executor: Finished task 1.0 in stage 6.0 (TID 21). 1123 bytes result sent to driver
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 6.0 (TID 21) in 11 ms on localhost (2/4)
19/03/14 09:26:32 INFO executor.Executor: Finished task 0.0 in stage 6.0 (TID 20). 1123 bytes result sent to driver
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 6.0 (TID 20) in 16 ms on localhost (3/4)
19/03/14 09:26:32 INFO executor.Executor: Finished task 2.0 in stage 6.0 (TID 22). 1123 bytes result sent to driver
19/03/14 09:26:32 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 6.0 (TID 22) in 17 ms on localhost (4/4)
19/03/14 09:26:32 INFO scheduler.DAGScheduler: ResultStage 6 (count at PanelBases.scala:69) finished in 0.018 s
19/03/14 09:26:32 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 6.0, whose tasks have all completed, from pool 
19/03/14 09:26:32 INFO scheduler.DAGScheduler: Job 2 finished: count at PanelBases.scala:69, took 0.055421 s
19/03/14 09:26:32 INFO rdd.MapPartitionsRDD: Removing RDD 2 from persistence list
19/03/14 09:26:32 INFO storage.BlockManager: Removing RDD 2
19/03/14 09:26:32 INFO rdd.MapPartitionsRDD: Removing RDD 6 from persistence list
19/03/14 09:26:32 INFO storage.BlockManager: Removing RDD 6
19/03/14 09:26:32 INFO spark.MapOutputTrackerMasterEndpoint: MapOutputTrackerMasterEndpoint stopped!
19/03/14 09:26:32 INFO storage.MemoryStore: MemoryStore cleared
19/03/14 09:26:32 INFO storage.BlockManager: BlockManager stopped
19/03/14 09:26:32 INFO storage.BlockManagerMaster: BlockManagerMaster stopped
19/03/14 09:26:32 INFO scheduler.OutputCommitCoordinator$OutputCommitCoordinatorEndpoint: OutputCommitCoordinator stopped!
19/03/14 09:26:32 INFO remote.RemoteActorRefProvider$RemotingTerminator: Shutting down remote daemon.
19/03/14 09:26:32 INFO remote.RemoteActorRefProvider$RemotingTerminator: Remote daemon shut down; proceeding with flushing remote transports.
19/03/14 09:26:32 INFO spark.SparkContext: Successfully stopped SparkContext
- compute coverage for a panel with two overlapping baits and one target
19/03/14 09:26:32 INFO remote.RemoteActorRefProvider$RemotingTerminator: Remoting shut down.
19/03/14 09:26:32 INFO spark.SparkContext: Running Spark version 1.6.1
19/03/14 09:26:32 INFO spark.SecurityManager: Changing view acls to: jenkins
19/03/14 09:26:32 INFO spark.SecurityManager: Changing modify acls to: jenkins
19/03/14 09:26:32 INFO spark.SecurityManager: SecurityManager: authentication disabled; ui acls disabled; users with view permissions: Set(jenkins); users with modify permissions: Set(jenkins)
RNASeqReadCountsSuite:
- check stats for an unaligned read
19/03/14 09:26:32 INFO util.Utils: Successfully started service 'sparkDriver' on port 58194.
- check stats for an unique read, mapped on the forward strand
- check stats for an unique read, mapped on the reverse strand
- check stats for a duplicated read, mapped on the forward strand
- check stats for a duplicated read, mapped on the reverse strand
19/03/14 09:26:32 INFO slf4j.Slf4jLogger: Slf4jLogger started
19/03/14 09:26:32 INFO Remoting: Starting remoting
19/03/14 09:26:33 INFO Remoting: Remoting started; listening on addresses :[akka.tcp://sparkDriverActorSystem@localhost:58195]
19/03/14 09:26:33 INFO util.Utils: Successfully started service 'sparkDriverActorSystem' on port 58195.
19/03/14 09:26:33 INFO spark.SparkEnv: Registering MapOutputTracker
19/03/14 09:26:33 INFO spark.SparkEnv: Registering BlockManagerMaster
19/03/14 09:26:33 INFO storage.DiskBlockManager: Created local directory at /tmp/blockmgr-d848fbb2-9982-40b0-9c14-ad55cf92256d
19/03/14 09:26:33 INFO storage.MemoryStore: MemoryStore started with capacity 500.3 MB
19/03/14 09:26:33 INFO spark.SparkEnv: Registering OutputCommitCoordinator
19/03/14 09:26:33 INFO executor.Executor: Starting executor ID driver on host localhost
19/03/14 09:26:33 INFO util.Utils: Successfully started service 'org.apache.spark.network.netty.NettyBlockTransferService' on port 37697.
19/03/14 09:26:33 INFO netty.NettyBlockTransferService: Server created on 37697
19/03/14 09:26:33 INFO storage.BlockManagerMaster: Trying to register BlockManager
19/03/14 09:26:33 INFO storage.BlockManagerMasterEndpoint: Registering block manager localhost:37697 with 500.3 MB RAM, BlockManagerId(driver, localhost, 37697)
19/03/14 09:26:33 INFO storage.BlockManagerMaster: Registered BlockManager
19/03/14 09:26:33 INFO spark.SparkContext: Starting job: reduce at RNASeqReadCounts.scala:80
19/03/14 09:26:33 INFO scheduler.DAGScheduler: Got job 0 (reduce at RNASeqReadCounts.scala:80) with 4 output partitions
19/03/14 09:26:33 INFO scheduler.DAGScheduler: Final stage: ResultStage 0 (reduce at RNASeqReadCounts.scala:80)
19/03/14 09:26:33 INFO scheduler.DAGScheduler: Parents of final stage: List()
19/03/14 09:26:33 INFO scheduler.DAGScheduler: Missing parents: List()
19/03/14 09:26:33 INFO scheduler.DAGScheduler: Submitting ResultStage 0 (MapPartitionsRDD[1] at map at RNASeqReadCounts.scala:79), which has no missing parents
19/03/14 09:26:33 INFO storage.MemoryStore: Block broadcast_0 stored as values in memory (estimated size 2.0 KB, free 2.0 KB)
19/03/14 09:26:33 INFO storage.MemoryStore: Block broadcast_0_piece0 stored as bytes in memory (estimated size 1324.0 B, free 3.3 KB)
19/03/14 09:26:33 INFO storage.BlockManagerInfo: Added broadcast_0_piece0 in memory on localhost:37697 (size: 1324.0 B, free: 500.2 MB)
19/03/14 09:26:33 INFO spark.SparkContext: Created broadcast 0 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:33 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ResultStage 0 (MapPartitionsRDD[1] at map at RNASeqReadCounts.scala:79)
19/03/14 09:26:33 INFO scheduler.TaskSchedulerImpl: Adding task set 0.0 with 4 tasks
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 0.0 (TID 0, localhost, partition 0,PROCESS_LOCAL, 2090 bytes)
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 0.0 (TID 1, localhost, partition 1,PROCESS_LOCAL, 2090 bytes)
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 0.0 (TID 2, localhost, partition 2,PROCESS_LOCAL, 2090 bytes)
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 0.0 (TID 3, localhost, partition 3,PROCESS_LOCAL, 2157 bytes)
19/03/14 09:26:33 INFO executor.Executor: Running task 0.0 in stage 0.0 (TID 0)
19/03/14 09:26:33 INFO executor.Executor: Running task 1.0 in stage 0.0 (TID 1)
19/03/14 09:26:33 INFO executor.Executor: Running task 2.0 in stage 0.0 (TID 2)
19/03/14 09:26:33 INFO executor.Executor: Running task 3.0 in stage 0.0 (TID 3)
19/03/14 09:26:33 INFO executor.Executor: Finished task 2.0 in stage 0.0 (TID 2). 934 bytes result sent to driver
19/03/14 09:26:33 INFO executor.Executor: Finished task 3.0 in stage 0.0 (TID 3). 934 bytes result sent to driver
19/03/14 09:26:33 INFO executor.Executor: Finished task 0.0 in stage 0.0 (TID 0). 934 bytes result sent to driver
19/03/14 09:26:33 INFO executor.Executor: Finished task 1.0 in stage 0.0 (TID 1). 934 bytes result sent to driver
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 0.0 (TID 2) in 12 ms on localhost (1/4)
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 0.0 (TID 3) in 11 ms on localhost (2/4)
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 0.0 (TID 1) in 14 ms on localhost (3/4)
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 0.0 (TID 0) in 16 ms on localhost (4/4)
19/03/14 09:26:33 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 0.0, whose tasks have all completed, from pool 
19/03/14 09:26:33 INFO scheduler.DAGScheduler: ResultStage 0 (reduce at RNASeqReadCounts.scala:80) finished in 0.017 s
19/03/14 09:26:33 INFO scheduler.DAGScheduler: Job 0 finished: reduce at RNASeqReadCounts.scala:80, took 0.022088 s
19/03/14 09:26:33 INFO spark.MapOutputTrackerMasterEndpoint: MapOutputTrackerMasterEndpoint stopped!
19/03/14 09:26:33 INFO storage.MemoryStore: MemoryStore cleared
19/03/14 09:26:33 INFO storage.BlockManager: BlockManager stopped
19/03/14 09:26:33 INFO storage.BlockManagerMaster: BlockManagerMaster stopped
19/03/14 09:26:33 INFO scheduler.OutputCommitCoordinator$OutputCommitCoordinatorEndpoint: OutputCommitCoordinator stopped!
19/03/14 09:26:33 INFO remote.RemoteActorRefProvider$RemotingTerminator: Shutting down remote daemon.
19/03/14 09:26:33 INFO remote.RemoteActorRefProvider$RemotingTerminator: Remote daemon shut down; proceeding with flushing remote transports.
19/03/14 09:26:33 INFO spark.SparkContext: Successfully stopped SparkContext
- run simple roll up
19/03/14 09:26:33 INFO spark.SparkContext: Running Spark version 1.6.1
19/03/14 09:26:33 INFO remote.RemoteActorRefProvider$RemotingTerminator: Remoting shut down.
19/03/14 09:26:33 INFO spark.SecurityManager: Changing view acls to: jenkins
19/03/14 09:26:33 INFO spark.SecurityManager: Changing modify acls to: jenkins
19/03/14 09:26:33 INFO spark.SecurityManager: SecurityManager: authentication disabled; ui acls disabled; users with view permissions: Set(jenkins); users with modify permissions: Set(jenkins)
ComparisonTraversalEngineSuite:
19/03/14 09:26:33 INFO util.Utils: Successfully started service 'sparkDriver' on port 57418.
19/03/14 09:26:33 INFO slf4j.Slf4jLogger: Slf4jLogger started
19/03/14 09:26:33 INFO Remoting: Starting remoting
19/03/14 09:26:33 INFO Remoting: Remoting started; listening on addresses :[akka.tcp://sparkDriverActorSystem@localhost:57419]
19/03/14 09:26:33 INFO util.Utils: Successfully started service 'sparkDriverActorSystem' on port 57419.
19/03/14 09:26:33 INFO spark.SparkEnv: Registering MapOutputTracker
19/03/14 09:26:33 INFO spark.SparkEnv: Registering BlockManagerMaster
19/03/14 09:26:33 INFO storage.DiskBlockManager: Created local directory at /tmp/blockmgr-1ad17753-aed5-43db-8f49-4d96347e19ef
19/03/14 09:26:33 INFO storage.MemoryStore: MemoryStore started with capacity 500.3 MB
19/03/14 09:26:33 INFO spark.SparkEnv: Registering OutputCommitCoordinator
19/03/14 09:26:33 INFO executor.Executor: Starting executor ID driver on host localhost
19/03/14 09:26:33 INFO util.Utils: Successfully started service 'org.apache.spark.network.netty.NettyBlockTransferService' on port 39259.
19/03/14 09:26:33 INFO netty.NettyBlockTransferService: Server created on 39259
19/03/14 09:26:33 INFO storage.BlockManagerMaster: Trying to register BlockManager
19/03/14 09:26:33 INFO storage.BlockManagerMasterEndpoint: Registering block manager localhost:39259 with 500.3 MB RAM, BlockManagerId(driver, localhost, 39259)
19/03/14 09:26:33 INFO storage.BlockManagerMaster: Registered BlockManager
19/03/14 09:26:33 INFO spark.SparkContext: Starting job: collect at ComparisonTraversalEngineSuite.scala:66
19/03/14 09:26:33 INFO scheduler.DAGScheduler: Registering RDD 2 (groupBy at SingleReadBucket.scala:34)
19/03/14 09:26:33 INFO scheduler.DAGScheduler: Registering RDD 6 (keyBy at ComparisonTraversalEngine.scala:43)
19/03/14 09:26:33 INFO scheduler.DAGScheduler: Registering RDD 7 (groupBy at SingleReadBucket.scala:34)
19/03/14 09:26:33 INFO scheduler.DAGScheduler: Registering RDD 11 (keyBy at ComparisonTraversalEngine.scala:45)
19/03/14 09:26:33 INFO scheduler.DAGScheduler: Got job 0 (collect at ComparisonTraversalEngineSuite.scala:66) with 4 output partitions
19/03/14 09:26:33 INFO scheduler.DAGScheduler: Final stage: ResultStage 4 (collect at ComparisonTraversalEngineSuite.scala:66)
19/03/14 09:26:33 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 1, ShuffleMapStage 3)
19/03/14 09:26:33 INFO scheduler.DAGScheduler: Missing parents: List(ShuffleMapStage 1, ShuffleMapStage 3)
19/03/14 09:26:33 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 0 (MapPartitionsRDD[2] at groupBy at SingleReadBucket.scala:34), which has no missing parents
19/03/14 09:26:33 INFO storage.MemoryStore: Block broadcast_0 stored as values in memory (estimated size 3.5 KB, free 3.5 KB)
19/03/14 09:26:33 INFO storage.MemoryStore: Block broadcast_0_piece0 stored as bytes in memory (estimated size 1913.0 B, free 5.4 KB)
19/03/14 09:26:33 INFO storage.BlockManagerInfo: Added broadcast_0_piece0 in memory on localhost:39259 (size: 1913.0 B, free: 500.2 MB)
19/03/14 09:26:33 INFO spark.SparkContext: Created broadcast 0 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:33 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 0 (MapPartitionsRDD[2] at groupBy at SingleReadBucket.scala:34)
19/03/14 09:26:33 INFO scheduler.TaskSchedulerImpl: Adding task set 0.0 with 4 tasks
19/03/14 09:26:33 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 2 (MapPartitionsRDD[7] at groupBy at SingleReadBucket.scala:34), which has no missing parents
19/03/14 09:26:33 INFO storage.MemoryStore: Block broadcast_1 stored as values in memory (estimated size 3.5 KB, free 8.9 KB)
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 0.0 (TID 0, localhost, partition 0,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 0.0 (TID 1, localhost, partition 1,PROCESS_LOCAL, 2144 bytes)
19/03/14 09:26:33 INFO storage.MemoryStore: Block broadcast_1_piece0 stored as bytes in memory (estimated size 1915.0 B, free 10.7 KB)
19/03/14 09:26:33 INFO storage.BlockManagerInfo: Added broadcast_1_piece0 in memory on localhost:39259 (size: 1915.0 B, free: 500.2 MB)
19/03/14 09:26:33 INFO spark.SparkContext: Created broadcast 1 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:33 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 2 (MapPartitionsRDD[7] at groupBy at SingleReadBucket.scala:34)
19/03/14 09:26:33 INFO scheduler.TaskSchedulerImpl: Adding task set 2.0 with 4 tasks
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 0.0 (TID 2, localhost, partition 2,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 0.0 (TID 3, localhost, partition 3,PROCESS_LOCAL, 2144 bytes)
19/03/14 09:26:33 INFO executor.Executor: Running task 0.0 in stage 0.0 (TID 0)
19/03/14 09:26:33 INFO executor.Executor: Running task 1.0 in stage 0.0 (TID 1)
19/03/14 09:26:33 INFO executor.Executor: Running task 2.0 in stage 0.0 (TID 2)
19/03/14 09:26:33 INFO executor.Executor: Running task 3.0 in stage 0.0 (TID 3)
19/03/14 09:26:33 INFO executor.Executor: Finished task 0.0 in stage 0.0 (TID 0). 1090 bytes result sent to driver
19/03/14 09:26:33 INFO executor.Executor: Finished task 2.0 in stage 0.0 (TID 2). 1090 bytes result sent to driver
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 2.0 (TID 4, localhost, partition 0,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:33 INFO executor.Executor: Running task 0.0 in stage 2.0 (TID 4)
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 2.0 (TID 5, localhost, partition 1,PROCESS_LOCAL, 2144 bytes)
19/03/14 09:26:33 INFO executor.Executor: Running task 1.0 in stage 2.0 (TID 5)
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 0.0 (TID 0) in 16 ms on localhost (1/4)
19/03/14 09:26:33 INFO executor.Executor: Finished task 0.0 in stage 2.0 (TID 4). 1090 bytes result sent to driver
19/03/14 09:26:33 INFO executor.Executor: Finished task 1.0 in stage 0.0 (TID 1). 1090 bytes result sent to driver
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 0.0 (TID 2) in 15 ms on localhost (2/4)
19/03/14 09:26:33 INFO executor.Executor: Finished task 3.0 in stage 0.0 (TID 3). 1090 bytes result sent to driver
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 2.0 (TID 6, localhost, partition 2,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:33 INFO executor.Executor: Running task 2.0 in stage 2.0 (TID 6)
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 2.0 (TID 7, localhost, partition 3,PROCESS_LOCAL, 2144 bytes)
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 2.0 (TID 4) in 9 ms on localhost (1/4)
19/03/14 09:26:33 INFO executor.Executor: Running task 3.0 in stage 2.0 (TID 7)
19/03/14 09:26:33 INFO executor.Executor: Finished task 2.0 in stage 2.0 (TID 6). 1090 bytes result sent to driver
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 0.0 (TID 1) in 23 ms on localhost (3/4)
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 0.0 (TID 3) in 20 ms on localhost (4/4)
19/03/14 09:26:33 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 0.0, whose tasks have all completed, from pool 
19/03/14 09:26:33 INFO scheduler.DAGScheduler: ShuffleMapStage 0 (groupBy at SingleReadBucket.scala:34) finished in 0.025 s
19/03/14 09:26:33 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:33 INFO scheduler.DAGScheduler: running: Set(ShuffleMapStage 2)
19/03/14 09:26:33 INFO scheduler.DAGScheduler: waiting: Set(ShuffleMapStage 1, ShuffleMapStage 3, ResultStage 4)
19/03/14 09:26:33 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:33 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 1 (MapPartitionsRDD[6] at keyBy at ComparisonTraversalEngine.scala:43), which has no missing parents
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 2.0 (TID 6) in 6 ms on localhost (2/4)
19/03/14 09:26:33 INFO executor.Executor: Finished task 1.0 in stage 2.0 (TID 5). 1090 bytes result sent to driver
19/03/14 09:26:33 INFO storage.MemoryStore: Block broadcast_2 stored as values in memory (estimated size 5.1 KB, free 15.8 KB)
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 2.0 (TID 5) in 16 ms on localhost (3/4)
19/03/14 09:26:33 INFO storage.MemoryStore: Block broadcast_2_piece0 stored as bytes in memory (estimated size 2.5 KB, free 18.4 KB)
19/03/14 09:26:33 INFO storage.BlockManagerInfo: Added broadcast_2_piece0 in memory on localhost:39259 (size: 2.5 KB, free: 500.2 MB)
19/03/14 09:26:33 INFO spark.SparkContext: Created broadcast 2 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:33 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 1 (MapPartitionsRDD[6] at keyBy at ComparisonTraversalEngine.scala:43)
19/03/14 09:26:33 INFO scheduler.TaskSchedulerImpl: Adding task set 1.0 with 4 tasks
19/03/14 09:26:33 INFO executor.Executor: Finished task 3.0 in stage 2.0 (TID 7). 1090 bytes result sent to driver
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 1.0 (TID 8, localhost, partition 0,NODE_LOCAL, 1883 bytes)
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 1.0 (TID 9, localhost, partition 1,NODE_LOCAL, 1883 bytes)
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 1.0 (TID 10, localhost, partition 2,NODE_LOCAL, 1883 bytes)
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 1.0 (TID 11, localhost, partition 3,NODE_LOCAL, 1883 bytes)
19/03/14 09:26:33 INFO executor.Executor: Running task 0.0 in stage 1.0 (TID 8)
19/03/14 09:26:33 INFO executor.Executor: Running task 3.0 in stage 1.0 (TID 11)
19/03/14 09:26:33 INFO executor.Executor: Running task 2.0 in stage 1.0 (TID 10)
19/03/14 09:26:33 INFO executor.Executor: Running task 1.0 in stage 1.0 (TID 9)
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 2.0 (TID 7) in 15 ms on localhost (4/4)
19/03/14 09:26:33 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 2.0, whose tasks have all completed, from pool 
19/03/14 09:26:33 INFO scheduler.DAGScheduler: ShuffleMapStage 2 (groupBy at SingleReadBucket.scala:34) finished in 0.030 s
19/03/14 09:26:33 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:33 INFO scheduler.DAGScheduler: running: Set(ShuffleMapStage 1)
19/03/14 09:26:33 INFO scheduler.DAGScheduler: waiting: Set(ShuffleMapStage 3, ResultStage 4)
19/03/14 09:26:33 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:33 INFO storage.ShuffleBlockFetcherIterator: Getting 2 non-empty blocks out of 4 blocks
19/03/14 09:26:33 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:33 INFO storage.ShuffleBlockFetcherIterator: Getting 2 non-empty blocks out of 4 blocks
19/03/14 09:26:33 INFO storage.ShuffleBlockFetcherIterator: Getting 2 non-empty blocks out of 4 blocks
19/03/14 09:26:33 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:33 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:33 INFO storage.ShuffleBlockFetcherIterator: Getting 2 non-empty blocks out of 4 blocks
19/03/14 09:26:33 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 3 (MapPartitionsRDD[11] at keyBy at ComparisonTraversalEngine.scala:45), which has no missing parents
19/03/14 09:26:33 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:33 INFO storage.MemoryStore: Block broadcast_3 stored as values in memory (estimated size 5.1 KB, free 23.5 KB)
19/03/14 09:26:33 INFO storage.MemoryStore: Block broadcast_3_piece0 stored as bytes in memory (estimated size 2.5 KB, free 26.0 KB)
19/03/14 09:26:33 INFO storage.BlockManagerInfo: Added broadcast_3_piece0 in memory on localhost:39259 (size: 2.5 KB, free: 500.2 MB)
19/03/14 09:26:33 INFO executor.Executor: Finished task 3.0 in stage 1.0 (TID 11). 1306 bytes result sent to driver
19/03/14 09:26:33 INFO executor.Executor: Finished task 2.0 in stage 1.0 (TID 10). 1306 bytes result sent to driver
19/03/14 09:26:33 INFO spark.SparkContext: Created broadcast 3 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:33 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 3 (MapPartitionsRDD[11] at keyBy at ComparisonTraversalEngine.scala:45)
19/03/14 09:26:33 INFO scheduler.TaskSchedulerImpl: Adding task set 3.0 with 4 tasks
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 3.0 (TID 12, localhost, partition 0,NODE_LOCAL, 1883 bytes)
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 3.0 (TID 13, localhost, partition 1,NODE_LOCAL, 1883 bytes)
19/03/14 09:26:33 INFO executor.Executor: Running task 0.0 in stage 3.0 (TID 12)
19/03/14 09:26:33 INFO executor.Executor: Running task 1.0 in stage 3.0 (TID 13)
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 1.0 (TID 10) in 9 ms on localhost (1/4)
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 1.0 (TID 11) in 9 ms on localhost (2/4)
19/03/14 09:26:33 INFO storage.ShuffleBlockFetcherIterator: Getting 2 non-empty blocks out of 4 blocks
19/03/14 09:26:33 INFO storage.ShuffleBlockFetcherIterator: Getting 2 non-empty blocks out of 4 blocks
19/03/14 09:26:33 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:33 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:33 INFO executor.Executor: Finished task 0.0 in stage 1.0 (TID 8). 1306 bytes result sent to driver
19/03/14 09:26:33 INFO executor.Executor: Finished task 1.0 in stage 1.0 (TID 9). 1306 bytes result sent to driver
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 3.0 (TID 14, localhost, partition 2,NODE_LOCAL, 1883 bytes)
19/03/14 09:26:33 INFO executor.Executor: Running task 2.0 in stage 3.0 (TID 14)
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 3.0 (TID 15, localhost, partition 3,NODE_LOCAL, 1883 bytes)
19/03/14 09:26:33 INFO executor.Executor: Running task 3.0 in stage 3.0 (TID 15)
19/03/14 09:26:33 INFO storage.ShuffleBlockFetcherIterator: Getting 2 non-empty blocks out of 4 blocks
19/03/14 09:26:33 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 1.0 (TID 8) in 20 ms on localhost (3/4)
19/03/14 09:26:33 INFO storage.ShuffleBlockFetcherIterator: Getting 2 non-empty blocks out of 4 blocks
19/03/14 09:26:33 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 1.0 (TID 9) in 19 ms on localhost (4/4)
19/03/14 09:26:33 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 1.0, whose tasks have all completed, from pool 
19/03/14 09:26:33 INFO scheduler.DAGScheduler: ShuffleMapStage 1 (keyBy at ComparisonTraversalEngine.scala:43) finished in 0.020 s
19/03/14 09:26:33 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:33 INFO executor.Executor: Finished task 1.0 in stage 3.0 (TID 13). 1306 bytes result sent to driver
19/03/14 09:26:33 INFO scheduler.DAGScheduler: running: Set(ShuffleMapStage 3)
19/03/14 09:26:33 INFO executor.Executor: Finished task 0.0 in stage 3.0 (TID 12). 1306 bytes result sent to driver
19/03/14 09:26:33 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 4)
19/03/14 09:26:33 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 3.0 (TID 13) in 14 ms on localhost (1/4)
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 3.0 (TID 12) in 15 ms on localhost (2/4)
19/03/14 09:26:33 INFO executor.Executor: Finished task 2.0 in stage 3.0 (TID 14). 1306 bytes result sent to driver
19/03/14 09:26:33 INFO executor.Executor: Finished task 3.0 in stage 3.0 (TID 15). 1306 bytes result sent to driver
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 3.0 (TID 14) in 7 ms on localhost (3/4)
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 3.0 (TID 15) in 6 ms on localhost (4/4)
19/03/14 09:26:33 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 3.0, whose tasks have all completed, from pool 
19/03/14 09:26:33 INFO scheduler.DAGScheduler: ShuffleMapStage 3 (keyBy at ComparisonTraversalEngine.scala:45) finished in 0.017 s
19/03/14 09:26:33 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:33 INFO scheduler.DAGScheduler: running: Set()
19/03/14 09:26:33 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 4)
19/03/14 09:26:33 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:33 INFO scheduler.DAGScheduler: Submitting ResultStage 4 (MapPartitionsRDD[15] at map at ComparisonTraversalEngine.scala:76), which has no missing parents
19/03/14 09:26:33 INFO storage.MemoryStore: Block broadcast_4 stored as values in memory (estimated size 3.6 KB, free 29.6 KB)
19/03/14 09:26:33 INFO storage.MemoryStore: Block broadcast_4_piece0 stored as bytes in memory (estimated size 2.0 KB, free 31.6 KB)
19/03/14 09:26:33 INFO storage.BlockManagerInfo: Added broadcast_4_piece0 in memory on localhost:39259 (size: 2.0 KB, free: 500.2 MB)
19/03/14 09:26:33 INFO spark.SparkContext: Created broadcast 4 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:33 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ResultStage 4 (MapPartitionsRDD[15] at map at ComparisonTraversalEngine.scala:76)
19/03/14 09:26:33 INFO scheduler.TaskSchedulerImpl: Adding task set 4.0 with 4 tasks
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 4.0 (TID 16, localhost, partition 0,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 4.0 (TID 17, localhost, partition 1,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 4.0 (TID 18, localhost, partition 2,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 4.0 (TID 19, localhost, partition 3,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:33 INFO executor.Executor: Running task 1.0 in stage 4.0 (TID 17)
19/03/14 09:26:33 INFO executor.Executor: Running task 3.0 in stage 4.0 (TID 19)
19/03/14 09:26:33 INFO executor.Executor: Running task 2.0 in stage 4.0 (TID 18)
19/03/14 09:26:33 INFO executor.Executor: Running task 0.0 in stage 4.0 (TID 16)
19/03/14 09:26:33 INFO storage.ShuffleBlockFetcherIterator: Getting 2 non-empty blocks out of 4 blocks
19/03/14 09:26:33 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:33 INFO storage.ShuffleBlockFetcherIterator: Getting 2 non-empty blocks out of 4 blocks
19/03/14 09:26:33 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:33 INFO storage.ShuffleBlockFetcherIterator: Getting 2 non-empty blocks out of 4 blocks
19/03/14 09:26:33 INFO storage.ShuffleBlockFetcherIterator: Getting 2 non-empty blocks out of 4 blocks
19/03/14 09:26:33 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:33 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:33 INFO storage.ShuffleBlockFetcherIterator: Getting 2 non-empty blocks out of 4 blocks
19/03/14 09:26:33 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:33 INFO storage.ShuffleBlockFetcherIterator: Getting 2 non-empty blocks out of 4 blocks
19/03/14 09:26:33 INFO storage.ShuffleBlockFetcherIterator: Getting 2 non-empty blocks out of 4 blocks
19/03/14 09:26:33 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:33 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:33 INFO storage.ShuffleBlockFetcherIterator: Getting 2 non-empty blocks out of 4 blocks
19/03/14 09:26:33 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:33 INFO executor.Executor: Finished task 1.0 in stage 4.0 (TID 17). 1124 bytes result sent to driver
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 4.0 (TID 17) in 9 ms on localhost (1/4)
19/03/14 09:26:33 INFO executor.Executor: Finished task 0.0 in stage 4.0 (TID 16). 1124 bytes result sent to driver
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 4.0 (TID 16) in 12 ms on localhost (2/4)
19/03/14 09:26:33 INFO executor.Executor: Finished task 2.0 in stage 4.0 (TID 18). 1139 bytes result sent to driver
19/03/14 09:26:33 INFO executor.Executor: Finished task 3.0 in stage 4.0 (TID 19). 1139 bytes result sent to driver
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 4.0 (TID 18) in 14 ms on localhost (3/4)
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 4.0 (TID 19) in 13 ms on localhost (4/4)
19/03/14 09:26:33 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 4.0, whose tasks have all completed, from pool 
19/03/14 09:26:33 INFO scheduler.DAGScheduler: ResultStage 4 (collect at ComparisonTraversalEngineSuite.scala:66) finished in 0.014 s
19/03/14 09:26:33 INFO scheduler.DAGScheduler: Job 0 finished: collect at ComparisonTraversalEngineSuite.scala:66, took 0.088285 s
19/03/14 09:26:33 INFO spark.MapOutputTrackerMasterEndpoint: MapOutputTrackerMasterEndpoint stopped!
19/03/14 09:26:33 INFO storage.MemoryStore: MemoryStore cleared
19/03/14 09:26:33 INFO storage.BlockManager: BlockManager stopped
19/03/14 09:26:33 INFO storage.BlockManagerMaster: BlockManagerMaster stopped
19/03/14 09:26:33 INFO scheduler.OutputCommitCoordinator$OutputCommitCoordinatorEndpoint: OutputCommitCoordinator stopped!
19/03/14 09:26:33 INFO remote.RemoteActorRefProvider$RemotingTerminator: Shutting down remote daemon.
19/03/14 09:26:33 INFO remote.RemoteActorRefProvider$RemotingTerminator: Remote daemon shut down; proceeding with flushing remote transports.
19/03/14 09:26:33 INFO spark.SparkContext: Successfully stopped SparkContext
- generate works on a simple RDD
19/03/14 09:26:33 INFO spark.SparkContext: Running Spark version 1.6.1
19/03/14 09:26:33 INFO remote.RemoteActorRefProvider$RemotingTerminator: Remoting shut down.
19/03/14 09:26:33 INFO spark.SecurityManager: Changing view acls to: jenkins
19/03/14 09:26:33 INFO spark.SecurityManager: Changing modify acls to: jenkins
19/03/14 09:26:33 INFO spark.SecurityManager: SecurityManager: authentication disabled; ui acls disabled; users with view permissions: Set(jenkins); users with modify permissions: Set(jenkins)
19/03/14 09:26:33 INFO util.Utils: Successfully started service 'sparkDriver' on port 53035.
19/03/14 09:26:33 INFO slf4j.Slf4jLogger: Slf4jLogger started
19/03/14 09:26:33 INFO Remoting: Starting remoting
19/03/14 09:26:33 INFO Remoting: Remoting started; listening on addresses :[akka.tcp://sparkDriverActorSystem@localhost:53036]
19/03/14 09:26:33 INFO util.Utils: Successfully started service 'sparkDriverActorSystem' on port 53036.
19/03/14 09:26:33 INFO spark.SparkEnv: Registering MapOutputTracker
19/03/14 09:26:33 INFO spark.SparkEnv: Registering BlockManagerMaster
19/03/14 09:26:33 INFO storage.DiskBlockManager: Created local directory at /tmp/blockmgr-60e0c409-7b31-478d-829f-55b00505ceec
19/03/14 09:26:33 INFO storage.MemoryStore: MemoryStore started with capacity 500.3 MB
19/03/14 09:26:33 INFO spark.SparkEnv: Registering OutputCommitCoordinator
19/03/14 09:26:33 INFO executor.Executor: Starting executor ID driver on host localhost
19/03/14 09:26:33 INFO util.Utils: Successfully started service 'org.apache.spark.network.netty.NettyBlockTransferService' on port 45850.
19/03/14 09:26:33 INFO netty.NettyBlockTransferService: Server created on 45850
19/03/14 09:26:33 INFO storage.BlockManagerMaster: Trying to register BlockManager
19/03/14 09:26:33 INFO storage.BlockManagerMasterEndpoint: Registering block manager localhost:45850 with 500.3 MB RAM, BlockManagerId(driver, localhost, 45850)
19/03/14 09:26:33 INFO storage.BlockManagerMaster: Registered BlockManager
19/03/14 09:26:33 INFO spark.SparkContext: Starting job: aggregate at ComparisonTraversalEngine.scala:88
19/03/14 09:26:33 INFO scheduler.DAGScheduler: Registering RDD 2 (groupBy at SingleReadBucket.scala:34)
19/03/14 09:26:33 INFO scheduler.DAGScheduler: Registering RDD 6 (keyBy at ComparisonTraversalEngine.scala:43)
19/03/14 09:26:33 INFO scheduler.DAGScheduler: Registering RDD 7 (groupBy at SingleReadBucket.scala:34)
19/03/14 09:26:33 INFO scheduler.DAGScheduler: Registering RDD 11 (keyBy at ComparisonTraversalEngine.scala:45)
19/03/14 09:26:33 INFO scheduler.DAGScheduler: Got job 0 (aggregate at ComparisonTraversalEngine.scala:88) with 4 output partitions
19/03/14 09:26:33 INFO scheduler.DAGScheduler: Final stage: ResultStage 4 (aggregate at ComparisonTraversalEngine.scala:88)
19/03/14 09:26:33 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 1, ShuffleMapStage 3)
19/03/14 09:26:33 INFO scheduler.DAGScheduler: Missing parents: List(ShuffleMapStage 1, ShuffleMapStage 3)
19/03/14 09:26:33 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 0 (MapPartitionsRDD[2] at groupBy at SingleReadBucket.scala:34), which has no missing parents
19/03/14 09:26:33 INFO storage.MemoryStore: Block broadcast_0 stored as values in memory (estimated size 3.5 KB, free 3.5 KB)
19/03/14 09:26:33 INFO storage.MemoryStore: Block broadcast_0_piece0 stored as bytes in memory (estimated size 1913.0 B, free 5.4 KB)
19/03/14 09:26:33 INFO storage.BlockManagerInfo: Added broadcast_0_piece0 in memory on localhost:45850 (size: 1913.0 B, free: 500.2 MB)
19/03/14 09:26:33 INFO spark.SparkContext: Created broadcast 0 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:33 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 0 (MapPartitionsRDD[2] at groupBy at SingleReadBucket.scala:34)
19/03/14 09:26:33 INFO scheduler.TaskSchedulerImpl: Adding task set 0.0 with 4 tasks
19/03/14 09:26:33 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 2 (MapPartitionsRDD[7] at groupBy at SingleReadBucket.scala:34), which has no missing parents
19/03/14 09:26:33 INFO storage.MemoryStore: Block broadcast_1 stored as values in memory (estimated size 3.5 KB, free 8.9 KB)
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 0.0 (TID 0, localhost, partition 0,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:33 INFO storage.MemoryStore: Block broadcast_1_piece0 stored as bytes in memory (estimated size 1915.0 B, free 10.7 KB)
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 0.0 (TID 1, localhost, partition 1,PROCESS_LOCAL, 2144 bytes)
19/03/14 09:26:33 INFO storage.BlockManagerInfo: Added broadcast_1_piece0 in memory on localhost:45850 (size: 1915.0 B, free: 500.2 MB)
19/03/14 09:26:33 INFO spark.SparkContext: Created broadcast 1 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:33 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 2 (MapPartitionsRDD[7] at groupBy at SingleReadBucket.scala:34)
19/03/14 09:26:33 INFO scheduler.TaskSchedulerImpl: Adding task set 2.0 with 4 tasks
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 0.0 (TID 2, localhost, partition 2,PROCESS_LOCAL, 2144 bytes)
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 0.0 (TID 3, localhost, partition 3,PROCESS_LOCAL, 2144 bytes)
19/03/14 09:26:33 INFO executor.Executor: Running task 0.0 in stage 0.0 (TID 0)
19/03/14 09:26:33 INFO executor.Executor: Running task 1.0 in stage 0.0 (TID 1)
19/03/14 09:26:33 INFO executor.Executor: Running task 2.0 in stage 0.0 (TID 2)
19/03/14 09:26:33 INFO executor.Executor: Running task 3.0 in stage 0.0 (TID 3)
19/03/14 09:26:33 INFO executor.Executor: Finished task 0.0 in stage 0.0 (TID 0). 1090 bytes result sent to driver
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 2.0 (TID 4, localhost, partition 0,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:33 INFO executor.Executor: Running task 0.0 in stage 2.0 (TID 4)
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 0.0 (TID 0) in 39 ms on localhost (1/4)
19/03/14 09:26:33 INFO executor.Executor: Finished task 0.0 in stage 2.0 (TID 4). 1090 bytes result sent to driver
19/03/14 09:26:33 INFO executor.Executor: Finished task 2.0 in stage 0.0 (TID 2). 1090 bytes result sent to driver
19/03/14 09:26:33 INFO executor.Executor: Finished task 1.0 in stage 0.0 (TID 1). 1090 bytes result sent to driver
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 2.0 (TID 5, localhost, partition 1,PROCESS_LOCAL, 2144 bytes)
19/03/14 09:26:33 INFO executor.Executor: Running task 1.0 in stage 2.0 (TID 5)
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 2.0 (TID 6, localhost, partition 2,PROCESS_LOCAL, 2144 bytes)
19/03/14 09:26:33 INFO executor.Executor: Running task 2.0 in stage 2.0 (TID 6)
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 2.0 (TID 4) in 13 ms on localhost (1/4)
19/03/14 09:26:33 INFO executor.Executor: Finished task 3.0 in stage 0.0 (TID 3). 1090 bytes result sent to driver
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 2.0 (TID 7, localhost, partition 3,PROCESS_LOCAL, 2144 bytes)
19/03/14 09:26:33 INFO executor.Executor: Running task 3.0 in stage 2.0 (TID 7)
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 0.0 (TID 2) in 46 ms on localhost (2/4)
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 0.0 (TID 1) in 49 ms on localhost (3/4)
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 0.0 (TID 3) in 46 ms on localhost (4/4)
19/03/14 09:26:33 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 0.0, whose tasks have all completed, from pool 
19/03/14 09:26:33 INFO scheduler.DAGScheduler: ShuffleMapStage 0 (groupBy at SingleReadBucket.scala:34) finished in 0.054 s
19/03/14 09:26:33 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:33 INFO scheduler.DAGScheduler: running: Set(ShuffleMapStage 2)
19/03/14 09:26:33 INFO scheduler.DAGScheduler: waiting: Set(ShuffleMapStage 1, ShuffleMapStage 3, ResultStage 4)
19/03/14 09:26:33 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:33 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 1 (MapPartitionsRDD[6] at keyBy at ComparisonTraversalEngine.scala:43), which has no missing parents
19/03/14 09:26:33 INFO storage.MemoryStore: Block broadcast_2 stored as values in memory (estimated size 5.1 KB, free 15.8 KB)
19/03/14 09:26:33 INFO storage.MemoryStore: Block broadcast_2_piece0 stored as bytes in memory (estimated size 2.5 KB, free 18.4 KB)
19/03/14 09:26:33 INFO executor.Executor: Finished task 1.0 in stage 2.0 (TID 5). 1090 bytes result sent to driver
19/03/14 09:26:33 INFO storage.BlockManagerInfo: Added broadcast_2_piece0 in memory on localhost:45850 (size: 2.5 KB, free: 500.2 MB)
19/03/14 09:26:33 INFO spark.SparkContext: Created broadcast 2 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:33 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 1 (MapPartitionsRDD[6] at keyBy at ComparisonTraversalEngine.scala:43)
19/03/14 09:26:33 INFO scheduler.TaskSchedulerImpl: Adding task set 1.0 with 4 tasks
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 1.0 (TID 8, localhost, partition 0,NODE_LOCAL, 1883 bytes)
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 1.0 (TID 9, localhost, partition 1,NODE_LOCAL, 1883 bytes)
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 2.0 (TID 5) in 16 ms on localhost (2/4)
19/03/14 09:26:33 INFO executor.Executor: Running task 1.0 in stage 1.0 (TID 9)
19/03/14 09:26:33 INFO executor.Executor: Running task 0.0 in stage 1.0 (TID 8)
19/03/14 09:26:33 INFO executor.Executor: Finished task 2.0 in stage 2.0 (TID 6). 1090 bytes result sent to driver
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 1.0 (TID 10, localhost, partition 2,NODE_LOCAL, 1883 bytes)
19/03/14 09:26:33 INFO executor.Executor: Running task 2.0 in stage 1.0 (TID 10)
19/03/14 09:26:33 INFO storage.ShuffleBlockFetcherIterator: Getting 3 non-empty blocks out of 4 blocks
19/03/14 09:26:33 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:33 INFO storage.ShuffleBlockFetcherIterator: Getting 3 non-empty blocks out of 4 blocks
19/03/14 09:26:33 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:33 INFO storage.ShuffleBlockFetcherIterator: Getting 3 non-empty blocks out of 4 blocks
19/03/14 09:26:33 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 2.0 (TID 6) in 16 ms on localhost (3/4)
19/03/14 09:26:33 INFO executor.Executor: Finished task 3.0 in stage 2.0 (TID 7). 1090 bytes result sent to driver
19/03/14 09:26:33 INFO executor.Executor: Finished task 2.0 in stage 1.0 (TID 10). 1306 bytes result sent to driver
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 1.0 (TID 11, localhost, partition 3,NODE_LOCAL, 1883 bytes)
19/03/14 09:26:33 INFO executor.Executor: Running task 3.0 in stage 1.0 (TID 11)
19/03/14 09:26:33 INFO storage.ShuffleBlockFetcherIterator: Getting 3 non-empty blocks out of 4 blocks
19/03/14 09:26:33 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 2.0 (TID 7) in 19 ms on localhost (4/4)
19/03/14 09:26:33 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 2.0, whose tasks have all completed, from pool 
19/03/14 09:26:33 INFO scheduler.DAGScheduler: ShuffleMapStage 2 (groupBy at SingleReadBucket.scala:34) finished in 0.059 s
19/03/14 09:26:33 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 1.0 (TID 10) in 9 ms on localhost (1/4)
19/03/14 09:26:33 INFO scheduler.DAGScheduler: running: Set(ShuffleMapStage 1)
19/03/14 09:26:33 INFO scheduler.DAGScheduler: waiting: Set(ShuffleMapStage 3, ResultStage 4)
19/03/14 09:26:33 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:33 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 3 (MapPartitionsRDD[11] at keyBy at ComparisonTraversalEngine.scala:45), which has no missing parents
19/03/14 09:26:33 INFO storage.MemoryStore: Block broadcast_3 stored as values in memory (estimated size 5.1 KB, free 23.5 KB)
19/03/14 09:26:33 INFO executor.Executor: Finished task 3.0 in stage 1.0 (TID 11). 1306 bytes result sent to driver
19/03/14 09:26:33 INFO storage.MemoryStore: Block broadcast_3_piece0 stored as bytes in memory (estimated size 2.5 KB, free 26.0 KB)
19/03/14 09:26:33 INFO executor.Executor: Finished task 0.0 in stage 1.0 (TID 8). 1306 bytes result sent to driver
19/03/14 09:26:33 INFO storage.BlockManagerInfo: Added broadcast_3_piece0 in memory on localhost:45850 (size: 2.5 KB, free: 500.2 MB)
19/03/14 09:26:33 INFO spark.SparkContext: Created broadcast 3 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:33 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 3 (MapPartitionsRDD[11] at keyBy at ComparisonTraversalEngine.scala:45)
19/03/14 09:26:33 INFO scheduler.TaskSchedulerImpl: Adding task set 3.0 with 4 tasks
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 3.0 (TID 12, localhost, partition 0,NODE_LOCAL, 1883 bytes)
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 3.0 (TID 13, localhost, partition 1,NODE_LOCAL, 1883 bytes)
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 3.0 (TID 14, localhost, partition 2,NODE_LOCAL, 1883 bytes)
19/03/14 09:26:33 INFO executor.Executor: Running task 2.0 in stage 3.0 (TID 14)
19/03/14 09:26:33 INFO executor.Executor: Running task 0.0 in stage 3.0 (TID 12)
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 1.0 (TID 8) in 17 ms on localhost (2/4)
19/03/14 09:26:33 INFO executor.Executor: Running task 1.0 in stage 3.0 (TID 13)
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 1.0 (TID 11) in 10 ms on localhost (3/4)
19/03/14 09:26:33 INFO storage.ShuffleBlockFetcherIterator: Getting 3 non-empty blocks out of 4 blocks
19/03/14 09:26:33 INFO storage.ShuffleBlockFetcherIterator: Getting 3 non-empty blocks out of 4 blocks
19/03/14 09:26:33 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:33 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:33 INFO storage.ShuffleBlockFetcherIterator: Getting 3 non-empty blocks out of 4 blocks
19/03/14 09:26:33 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:33 INFO executor.Executor: Finished task 1.0 in stage 1.0 (TID 9). 1306 bytes result sent to driver
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 3.0 (TID 15, localhost, partition 3,NODE_LOCAL, 1883 bytes)
19/03/14 09:26:33 INFO executor.Executor: Running task 3.0 in stage 3.0 (TID 15)
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 1.0 (TID 9) in 22 ms on localhost (4/4)
19/03/14 09:26:33 INFO storage.ShuffleBlockFetcherIterator: Getting 3 non-empty blocks out of 4 blocks
19/03/14 09:26:33 INFO scheduler.DAGScheduler: ShuffleMapStage 1 (keyBy at ComparisonTraversalEngine.scala:43) finished in 0.022 s
19/03/14 09:26:33 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:33 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:33 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 1.0, whose tasks have all completed, from pool 
19/03/14 09:26:33 INFO scheduler.DAGScheduler: running: Set(ShuffleMapStage 3)
19/03/14 09:26:33 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 4)
19/03/14 09:26:33 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:33 INFO executor.Executor: Finished task 2.0 in stage 3.0 (TID 14). 1306 bytes result sent to driver
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 3.0 (TID 14) in 8 ms on localhost (1/4)
19/03/14 09:26:33 INFO executor.Executor: Finished task 3.0 in stage 3.0 (TID 15). 1306 bytes result sent to driver
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 3.0 (TID 15) in 7 ms on localhost (2/4)
19/03/14 09:26:33 INFO executor.Executor: Finished task 0.0 in stage 3.0 (TID 12). 1306 bytes result sent to driver
19/03/14 09:26:33 INFO executor.Executor: Finished task 1.0 in stage 3.0 (TID 13). 1306 bytes result sent to driver
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 3.0 (TID 12) in 15 ms on localhost (3/4)
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 3.0 (TID 13) in 14 ms on localhost (4/4)
19/03/14 09:26:33 INFO scheduler.DAGScheduler: ShuffleMapStage 3 (keyBy at ComparisonTraversalEngine.scala:45) finished in 0.015 s
19/03/14 09:26:33 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 3.0, whose tasks have all completed, from pool 
19/03/14 09:26:33 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:33 INFO scheduler.DAGScheduler: running: Set()
19/03/14 09:26:33 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 4)
19/03/14 09:26:33 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:33 INFO scheduler.DAGScheduler: Submitting ResultStage 4 (MapPartitionsRDD[15] at map at ComparisonTraversalEngine.scala:76), which has no missing parents
19/03/14 09:26:33 INFO storage.MemoryStore: Block broadcast_4 stored as values in memory (estimated size 4.3 KB, free 30.3 KB)
19/03/14 09:26:33 INFO storage.MemoryStore: Block broadcast_4_piece0 stored as bytes in memory (estimated size 2.3 KB, free 32.6 KB)
19/03/14 09:26:33 INFO storage.BlockManagerInfo: Added broadcast_4_piece0 in memory on localhost:45850 (size: 2.3 KB, free: 500.2 MB)
19/03/14 09:26:33 INFO spark.SparkContext: Created broadcast 4 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:33 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ResultStage 4 (MapPartitionsRDD[15] at map at ComparisonTraversalEngine.scala:76)
19/03/14 09:26:33 INFO scheduler.TaskSchedulerImpl: Adding task set 4.0 with 4 tasks
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 4.0 (TID 16, localhost, partition 0,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 4.0 (TID 17, localhost, partition 1,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 4.0 (TID 18, localhost, partition 2,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 4.0 (TID 19, localhost, partition 3,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:33 INFO executor.Executor: Running task 0.0 in stage 4.0 (TID 16)
19/03/14 09:26:33 INFO executor.Executor: Running task 3.0 in stage 4.0 (TID 19)
19/03/14 09:26:33 INFO executor.Executor: Running task 1.0 in stage 4.0 (TID 17)
19/03/14 09:26:33 INFO executor.Executor: Running task 2.0 in stage 4.0 (TID 18)
19/03/14 09:26:33 INFO storage.ShuffleBlockFetcherIterator: Getting 2 non-empty blocks out of 4 blocks
19/03/14 09:26:33 INFO storage.ShuffleBlockFetcherIterator: Getting 2 non-empty blocks out of 4 blocks
19/03/14 09:26:33 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:33 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:33 INFO storage.ShuffleBlockFetcherIterator: Getting 2 non-empty blocks out of 4 blocks
19/03/14 09:26:33 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:33 INFO storage.ShuffleBlockFetcherIterator: Getting 2 non-empty blocks out of 4 blocks
19/03/14 09:26:33 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 1 ms
19/03/14 09:26:33 INFO storage.ShuffleBlockFetcherIterator: Getting 2 non-empty blocks out of 4 blocks
19/03/14 09:26:33 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:33 INFO storage.ShuffleBlockFetcherIterator: Getting 2 non-empty blocks out of 4 blocks
19/03/14 09:26:33 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:33 INFO storage.ShuffleBlockFetcherIterator: Getting 2 non-empty blocks out of 4 blocks
19/03/14 09:26:33 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:33 INFO storage.ShuffleBlockFetcherIterator: Getting 2 non-empty blocks out of 4 blocks
19/03/14 09:26:33 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:33 INFO executor.Executor: Finished task 1.0 in stage 4.0 (TID 17). 1206 bytes result sent to driver
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 4.0 (TID 17) in 10 ms on localhost (1/4)
19/03/14 09:26:33 INFO executor.Executor: Finished task 0.0 in stage 4.0 (TID 16). 1171 bytes result sent to driver
19/03/14 09:26:33 INFO executor.Executor: Finished task 2.0 in stage 4.0 (TID 18). 1171 bytes result sent to driver
19/03/14 09:26:33 INFO executor.Executor: Finished task 3.0 in stage 4.0 (TID 19). 1171 bytes result sent to driver
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 4.0 (TID 18) in 15 ms on localhost (2/4)
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 4.0 (TID 16) in 15 ms on localhost (3/4)
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 4.0 (TID 19) in 15 ms on localhost (4/4)
19/03/14 09:26:33 INFO scheduler.DAGScheduler: ResultStage 4 (aggregate at ComparisonTraversalEngine.scala:88) finished in 0.016 s
19/03/14 09:26:33 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 4.0, whose tasks have all completed, from pool 
19/03/14 09:26:33 INFO scheduler.DAGScheduler: Job 0 finished: aggregate at ComparisonTraversalEngine.scala:88, took 0.120840 s
19/03/14 09:26:33 INFO spark.MapOutputTrackerMasterEndpoint: MapOutputTrackerMasterEndpoint stopped!
19/03/14 09:26:33 INFO storage.MemoryStore: MemoryStore cleared
19/03/14 09:26:33 INFO storage.BlockManager: BlockManager stopped
19/03/14 09:26:33 INFO storage.BlockManagerMaster: BlockManagerMaster stopped
19/03/14 09:26:33 INFO scheduler.OutputCommitCoordinator$OutputCommitCoordinatorEndpoint: OutputCommitCoordinator stopped!
19/03/14 09:26:33 INFO remote.RemoteActorRefProvider$RemotingTerminator: Shutting down remote daemon.
19/03/14 09:26:33 INFO remote.RemoteActorRefProvider$RemotingTerminator: Remote daemon shut down; proceeding with flushing remote transports.
19/03/14 09:26:33 INFO spark.SparkContext: Successfully stopped SparkContext
- combine works on a simple RDD
19/03/14 09:26:33 INFO spark.SparkContext: Running Spark version 1.6.1
19/03/14 09:26:33 INFO remote.RemoteActorRefProvider$RemotingTerminator: Remoting shut down.
19/03/14 09:26:33 INFO spark.SecurityManager: Changing view acls to: jenkins
19/03/14 09:26:33 INFO spark.SecurityManager: Changing modify acls to: jenkins
19/03/14 09:26:33 INFO spark.SecurityManager: SecurityManager: authentication disabled; ui acls disabled; users with view permissions: Set(jenkins); users with modify permissions: Set(jenkins)
AFFromVCFSuite:
19/03/14 09:26:33 INFO util.Utils: Successfully started service 'sparkDriver' on port 51221.
19/03/14 09:26:33 INFO slf4j.Slf4jLogger: Slf4jLogger started
19/03/14 09:26:33 INFO Remoting: Starting remoting
19/03/14 09:26:33 INFO Remoting: Remoting started; listening on addresses :[akka.tcp://sparkDriverActorSystem@localhost:51222]
19/03/14 09:26:33 INFO util.Utils: Successfully started service 'sparkDriverActorSystem' on port 51222.
19/03/14 09:26:33 INFO spark.SparkEnv: Registering MapOutputTracker
19/03/14 09:26:33 INFO spark.SparkEnv: Registering BlockManagerMaster
19/03/14 09:26:33 INFO storage.DiskBlockManager: Created local directory at /tmp/blockmgr-4fb143e0-ad93-4d10-b56b-775a4767e55d
19/03/14 09:26:33 INFO storage.MemoryStore: MemoryStore started with capacity 522.4 MB
19/03/14 09:26:33 INFO spark.SparkEnv: Registering OutputCommitCoordinator
19/03/14 09:26:33 INFO executor.Executor: Starting executor ID driver on host localhost
19/03/14 09:26:33 INFO util.Utils: Successfully started service 'org.apache.spark.network.netty.NettyBlockTransferService' on port 46697.
19/03/14 09:26:33 INFO netty.NettyBlockTransferService: Server created on 46697
19/03/14 09:26:33 INFO storage.BlockManagerMaster: Trying to register BlockManager
19/03/14 09:26:33 INFO storage.BlockManagerMasterEndpoint: Registering block manager localhost:46697 with 522.4 MB RAM, BlockManagerId(driver, localhost, 46697)
19/03/14 09:26:33 INFO storage.BlockManagerMaster: Registered BlockManager
19/03/14 09:26:33 INFO storage.MemoryStore: Block broadcast_0 stored as values in memory (estimated size 33.1 KB, free 33.1 KB)
19/03/14 09:26:33 INFO storage.MemoryStore: Block broadcast_0_piece0 stored as bytes in memory (estimated size 3.7 KB, free 36.8 KB)
19/03/14 09:26:33 INFO storage.BlockManagerInfo: Added broadcast_0_piece0 in memory on localhost:46697 (size: 3.7 KB, free: 522.4 MB)
19/03/14 09:26:33 INFO spark.SparkContext: Created broadcast 0 from newAPIHadoopFile at AFFromVCF.scala:40
19/03/14 09:26:33 INFO input.FileInputFormat: Total input paths to process : 1
19/03/14 09:26:33 INFO spark.SparkContext: Starting job: count at AFFromVCFSuite.scala:27
19/03/14 09:26:33 INFO scheduler.DAGScheduler: Got job 0 (count at AFFromVCFSuite.scala:27) with 1 output partitions
19/03/14 09:26:33 INFO scheduler.DAGScheduler: Final stage: ResultStage 0 (count at AFFromVCFSuite.scala:27)
19/03/14 09:26:33 INFO scheduler.DAGScheduler: Parents of final stage: List()
19/03/14 09:26:33 INFO scheduler.DAGScheduler: Missing parents: List()
19/03/14 09:26:33 INFO scheduler.DAGScheduler: Submitting ResultStage 0 (MapPartitionsRDD[2] at flatMap at AFFromVCF.scala:34), which has no missing parents
19/03/14 09:26:33 INFO storage.MemoryStore: Block broadcast_1 stored as values in memory (estimated size 2.7 KB, free 39.5 KB)
19/03/14 09:26:33 INFO storage.MemoryStore: Block broadcast_1_piece0 stored as bytes in memory (estimated size 1633.0 B, free 41.1 KB)
19/03/14 09:26:33 INFO storage.BlockManagerInfo: Added broadcast_1_piece0 in memory on localhost:46697 (size: 1633.0 B, free: 522.4 MB)
19/03/14 09:26:33 INFO spark.SparkContext: Created broadcast 1 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:33 INFO scheduler.DAGScheduler: Submitting 1 missing tasks from ResultStage 0 (MapPartitionsRDD[2] at flatMap at AFFromVCF.scala:34)
19/03/14 09:26:33 INFO scheduler.TaskSchedulerImpl: Adding task set 0.0 with 1 tasks
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 0.0 (TID 0, localhost, partition 0,PROCESS_LOCAL, 2257 bytes)
19/03/14 09:26:33 INFO executor.Executor: Running task 0.0 in stage 0.0 (TID 0)
19/03/14 09:26:33 INFO rdd.NewHadoopRDD: Input split: file:/home/jenkins/workspace/quinine/hadoop.version/1.0.4/label/centos/quinine-core/target/scala-2.10.4/test-classes/af.vcf:0+365
19/03/14 09:26:33 INFO executor.Executor: Finished task 0.0 in stage 0.0 (TID 0). 2057 bytes result sent to driver
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 0.0 (TID 0) in 75 ms on localhost (1/1)
19/03/14 09:26:33 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 0.0, whose tasks have all completed, from pool 
19/03/14 09:26:33 INFO scheduler.DAGScheduler: ResultStage 0 (count at AFFromVCFSuite.scala:27) finished in 0.075 s
19/03/14 09:26:33 INFO scheduler.DAGScheduler: Job 0 finished: count at AFFromVCFSuite.scala:27, took 0.091123 s
19/03/14 09:26:33 INFO spark.MapOutputTrackerMasterEndpoint: MapOutputTrackerMasterEndpoint stopped!
19/03/14 09:26:33 INFO storage.MemoryStore: MemoryStore cleared
19/03/14 09:26:33 INFO storage.BlockManager: BlockManager stopped
19/03/14 09:26:33 INFO storage.BlockManagerMaster: BlockManagerMaster stopped
19/03/14 09:26:33 INFO scheduler.OutputCommitCoordinator$OutputCommitCoordinatorEndpoint: OutputCommitCoordinator stopped!
19/03/14 09:26:33 INFO remote.RemoteActorRefProvider$RemotingTerminator: Shutting down remote daemon.
19/03/14 09:26:33 INFO remote.RemoteActorRefProvider$RemotingTerminator: Remote daemon shut down; proceeding with flushing remote transports.
19/03/14 09:26:33 INFO spark.SparkContext: Successfully stopped SparkContext
- converting variant contexts
19/03/14 09:26:33 INFO spark.SparkContext: Running Spark version 1.6.1
19/03/14 09:26:33 INFO remote.RemoteActorRefProvider$RemotingTerminator: Remoting shut down.
19/03/14 09:26:33 INFO spark.SecurityManager: Changing view acls to: jenkins
19/03/14 09:26:33 INFO spark.SecurityManager: Changing modify acls to: jenkins
19/03/14 09:26:33 INFO spark.SecurityManager: SecurityManager: authentication disabled; ui acls disabled; users with view permissions: Set(jenkins); users with modify permissions: Set(jenkins)
ComparisonsSuite:
19/03/14 09:26:33 INFO util.Utils: Successfully started service 'sparkDriver' on port 51904.
19/03/14 09:26:33 INFO slf4j.Slf4jLogger: Slf4jLogger started
19/03/14 09:26:33 INFO Remoting: Starting remoting
19/03/14 09:26:33 INFO Remoting: Remoting started; listening on addresses :[akka.tcp://sparkDriverActorSystem@localhost:51905]
19/03/14 09:26:33 INFO util.Utils: Successfully started service 'sparkDriverActorSystem' on port 51905.
19/03/14 09:26:33 INFO spark.SparkEnv: Registering MapOutputTracker
19/03/14 09:26:33 INFO spark.SparkEnv: Registering BlockManagerMaster
19/03/14 09:26:33 INFO storage.DiskBlockManager: Created local directory at /tmp/blockmgr-234bbe21-a741-4e60-b6b4-6d6c528bbde5
19/03/14 09:26:33 INFO storage.MemoryStore: MemoryStore started with capacity 522.4 MB
19/03/14 09:26:33 INFO spark.SparkEnv: Registering OutputCommitCoordinator
19/03/14 09:26:33 INFO executor.Executor: Starting executor ID driver on host localhost
19/03/14 09:26:33 INFO util.Utils: Successfully started service 'org.apache.spark.network.netty.NettyBlockTransferService' on port 42121.
19/03/14 09:26:33 INFO netty.NettyBlockTransferService: Server created on 42121
19/03/14 09:26:33 INFO storage.BlockManagerMaster: Trying to register BlockManager
19/03/14 09:26:33 INFO storage.BlockManagerMasterEndpoint: Registering block manager localhost:42121 with 522.4 MB RAM, BlockManagerId(driver, localhost, 42121)
19/03/14 09:26:33 INFO storage.BlockManagerMaster: Registered BlockManager
19/03/14 09:26:33 INFO spark.SparkContext: Starting job: first at ComparisonsSuite.scala:40
19/03/14 09:26:33 INFO scheduler.DAGScheduler: Registering RDD 1 (groupBy at SingleReadBucket.scala:34)
19/03/14 09:26:33 INFO scheduler.DAGScheduler: Got job 0 (first at ComparisonsSuite.scala:40) with 1 output partitions
19/03/14 09:26:33 INFO scheduler.DAGScheduler: Final stage: ResultStage 1 (first at ComparisonsSuite.scala:40)
19/03/14 09:26:33 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 0)
19/03/14 09:26:33 INFO scheduler.DAGScheduler: Missing parents: List(ShuffleMapStage 0)
19/03/14 09:26:33 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 0 (MapPartitionsRDD[1] at groupBy at SingleReadBucket.scala:34), which has no missing parents
19/03/14 09:26:33 INFO storage.MemoryStore: Block broadcast_0 stored as values in memory (estimated size 3.5 KB, free 3.5 KB)
19/03/14 09:26:33 INFO storage.MemoryStore: Block broadcast_0_piece0 stored as bytes in memory (estimated size 1915.0 B, free 5.4 KB)
19/03/14 09:26:33 INFO storage.BlockManagerInfo: Added broadcast_0_piece0 in memory on localhost:42121 (size: 1915.0 B, free: 522.4 MB)
19/03/14 09:26:33 INFO spark.SparkContext: Created broadcast 0 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:33 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 0 (MapPartitionsRDD[1] at groupBy at SingleReadBucket.scala:34)
19/03/14 09:26:33 INFO scheduler.TaskSchedulerImpl: Adding task set 0.0 with 4 tasks
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 0.0 (TID 0, localhost, partition 0,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 0.0 (TID 1, localhost, partition 1,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 0.0 (TID 2, localhost, partition 2,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 0.0 (TID 3, localhost, partition 3,PROCESS_LOCAL, 2144 bytes)
19/03/14 09:26:33 INFO executor.Executor: Running task 0.0 in stage 0.0 (TID 0)
19/03/14 09:26:33 INFO executor.Executor: Running task 1.0 in stage 0.0 (TID 1)
19/03/14 09:26:33 INFO executor.Executor: Running task 2.0 in stage 0.0 (TID 2)
19/03/14 09:26:33 INFO executor.Executor: Running task 3.0 in stage 0.0 (TID 3)
19/03/14 09:26:33 INFO executor.Executor: Finished task 2.0 in stage 0.0 (TID 2). 1090 bytes result sent to driver
19/03/14 09:26:33 INFO executor.Executor: Finished task 0.0 in stage 0.0 (TID 0). 1090 bytes result sent to driver
19/03/14 09:26:33 INFO executor.Executor: Finished task 1.0 in stage 0.0 (TID 1). 1090 bytes result sent to driver
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 0.0 (TID 1) in 16 ms on localhost (1/4)
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 0.0 (TID 2) in 14 ms on localhost (2/4)
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 0.0 (TID 0) in 19 ms on localhost (3/4)
19/03/14 09:26:33 INFO executor.Executor: Finished task 3.0 in stage 0.0 (TID 3). 1090 bytes result sent to driver
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 0.0 (TID 3) in 17 ms on localhost (4/4)
19/03/14 09:26:33 INFO scheduler.DAGScheduler: ShuffleMapStage 0 (groupBy at SingleReadBucket.scala:34) finished in 0.025 s
19/03/14 09:26:33 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 0.0, whose tasks have all completed, from pool 
19/03/14 09:26:33 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:33 INFO scheduler.DAGScheduler: running: Set()
19/03/14 09:26:33 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 1)
19/03/14 09:26:33 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:33 INFO scheduler.DAGScheduler: Submitting ResultStage 1 (MapPartitionsRDD[3] at map at SingleReadBucket.scala:35), which has no missing parents
19/03/14 09:26:33 INFO storage.MemoryStore: Block broadcast_1 stored as values in memory (estimated size 4.6 KB, free 9.9 KB)
19/03/14 09:26:33 INFO storage.MemoryStore: Block broadcast_1_piece0 stored as bytes in memory (estimated size 2.3 KB, free 12.2 KB)
19/03/14 09:26:33 INFO storage.BlockManagerInfo: Added broadcast_1_piece0 in memory on localhost:42121 (size: 2.3 KB, free: 522.4 MB)
19/03/14 09:26:33 INFO spark.SparkContext: Created broadcast 1 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:33 INFO scheduler.DAGScheduler: Submitting 1 missing tasks from ResultStage 1 (MapPartitionsRDD[3] at map at SingleReadBucket.scala:35)
19/03/14 09:26:33 INFO scheduler.TaskSchedulerImpl: Adding task set 1.0 with 1 tasks
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 1.0 (TID 4, localhost, partition 0,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:33 INFO executor.Executor: Running task 0.0 in stage 1.0 (TID 4)
19/03/14 09:26:33 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:33 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:33 INFO executor.Executor: Finished task 0.0 in stage 1.0 (TID 4). 1171 bytes result sent to driver
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 1.0 (TID 4) in 9 ms on localhost (1/1)
19/03/14 09:26:33 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 1.0, whose tasks have all completed, from pool 
19/03/14 09:26:33 INFO scheduler.DAGScheduler: ResultStage 1 (first at ComparisonsSuite.scala:40) finished in 0.009 s
19/03/14 09:26:33 INFO scheduler.DAGScheduler: Job 0 finished: first at ComparisonsSuite.scala:40, took 0.045559 s
19/03/14 09:26:33 INFO spark.SparkContext: Starting job: first at ComparisonsSuite.scala:40
19/03/14 09:26:33 INFO spark.MapOutputTrackerMaster: Size of output statuses for shuffle 0 is 158 bytes
19/03/14 09:26:33 INFO scheduler.DAGScheduler: Got job 1 (first at ComparisonsSuite.scala:40) with 3 output partitions
19/03/14 09:26:33 INFO scheduler.DAGScheduler: Final stage: ResultStage 3 (first at ComparisonsSuite.scala:40)
19/03/14 09:26:33 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 2)
19/03/14 09:26:33 INFO scheduler.DAGScheduler: Missing parents: List()
19/03/14 09:26:33 INFO scheduler.DAGScheduler: Submitting ResultStage 3 (MapPartitionsRDD[3] at map at SingleReadBucket.scala:35), which has no missing parents
19/03/14 09:26:33 INFO storage.MemoryStore: Block broadcast_2 stored as values in memory (estimated size 4.6 KB, free 16.8 KB)
19/03/14 09:26:33 INFO storage.MemoryStore: Block broadcast_2_piece0 stored as bytes in memory (estimated size 2.3 KB, free 19.1 KB)
19/03/14 09:26:33 INFO storage.BlockManagerInfo: Added broadcast_2_piece0 in memory on localhost:42121 (size: 2.3 KB, free: 522.4 MB)
19/03/14 09:26:33 INFO spark.SparkContext: Created broadcast 2 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:33 INFO scheduler.DAGScheduler: Submitting 3 missing tasks from ResultStage 3 (MapPartitionsRDD[3] at map at SingleReadBucket.scala:35)
19/03/14 09:26:33 INFO scheduler.TaskSchedulerImpl: Adding task set 3.0 with 3 tasks
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 3.0 (TID 5, localhost, partition 1,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 3.0 (TID 6, localhost, partition 2,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 3.0 (TID 7, localhost, partition 3,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:33 INFO executor.Executor: Running task 2.0 in stage 3.0 (TID 7)
19/03/14 09:26:33 INFO executor.Executor: Running task 1.0 in stage 3.0 (TID 6)
19/03/14 09:26:33 INFO executor.Executor: Running task 0.0 in stage 3.0 (TID 5)
19/03/14 09:26:33 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:33 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:33 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:33 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 1 ms
19/03/14 09:26:33 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 1 ms
19/03/14 09:26:33 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 1 ms
19/03/14 09:26:33 INFO executor.Executor: Finished task 2.0 in stage 3.0 (TID 7). 1171 bytes result sent to driver
19/03/14 09:26:33 INFO executor.Executor: Finished task 0.0 in stage 3.0 (TID 5). 1171 bytes result sent to driver
19/03/14 09:26:33 INFO executor.Executor: Finished task 1.0 in stage 3.0 (TID 6). 1306 bytes result sent to driver
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 3.0 (TID 5) in 13 ms on localhost (1/3)
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 3.0 (TID 7) in 13 ms on localhost (2/3)
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 3.0 (TID 6) in 15 ms on localhost (3/3)
19/03/14 09:26:33 INFO scheduler.DAGScheduler: ResultStage 3 (first at ComparisonsSuite.scala:40) finished in 0.016 s
19/03/14 09:26:33 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 3.0, whose tasks have all completed, from pool 
19/03/14 09:26:33 INFO scheduler.DAGScheduler: Job 1 finished: first at ComparisonsSuite.scala:40, took 0.021988 s
19/03/14 09:26:33 INFO spark.SparkContext: Starting job: first at ComparisonsSuite.scala:40
19/03/14 09:26:33 INFO scheduler.DAGScheduler: Registering RDD 5 (groupBy at SingleReadBucket.scala:34)
19/03/14 09:26:33 INFO scheduler.DAGScheduler: Got job 2 (first at ComparisonsSuite.scala:40) with 1 output partitions
19/03/14 09:26:33 INFO scheduler.DAGScheduler: Final stage: ResultStage 5 (first at ComparisonsSuite.scala:40)
19/03/14 09:26:33 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 4)
19/03/14 09:26:33 INFO scheduler.DAGScheduler: Missing parents: List(ShuffleMapStage 4)
19/03/14 09:26:33 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 4 (MapPartitionsRDD[5] at groupBy at SingleReadBucket.scala:34), which has no missing parents
19/03/14 09:26:33 INFO storage.MemoryStore: Block broadcast_3 stored as values in memory (estimated size 3.5 KB, free 22.6 KB)
19/03/14 09:26:33 INFO storage.MemoryStore: Block broadcast_3_piece0 stored as bytes in memory (estimated size 1912.0 B, free 24.5 KB)
19/03/14 09:26:33 INFO storage.BlockManagerInfo: Added broadcast_3_piece0 in memory on localhost:42121 (size: 1912.0 B, free: 522.4 MB)
19/03/14 09:26:33 INFO spark.SparkContext: Created broadcast 3 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:33 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 4 (MapPartitionsRDD[5] at groupBy at SingleReadBucket.scala:34)
19/03/14 09:26:33 INFO scheduler.TaskSchedulerImpl: Adding task set 4.0 with 4 tasks
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 4.0 (TID 8, localhost, partition 0,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 4.0 (TID 9, localhost, partition 1,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 4.0 (TID 10, localhost, partition 2,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 4.0 (TID 11, localhost, partition 3,PROCESS_LOCAL, 2144 bytes)
19/03/14 09:26:33 INFO executor.Executor: Running task 3.0 in stage 4.0 (TID 11)
19/03/14 09:26:33 INFO executor.Executor: Running task 1.0 in stage 4.0 (TID 9)
19/03/14 09:26:33 INFO executor.Executor: Running task 2.0 in stage 4.0 (TID 10)
19/03/14 09:26:33 INFO executor.Executor: Running task 0.0 in stage 4.0 (TID 8)
19/03/14 09:26:33 INFO executor.Executor: Finished task 2.0 in stage 4.0 (TID 10). 1090 bytes result sent to driver
19/03/14 09:26:33 INFO executor.Executor: Finished task 0.0 in stage 4.0 (TID 8). 1090 bytes result sent to driver
19/03/14 09:26:33 INFO executor.Executor: Finished task 1.0 in stage 4.0 (TID 9). 1090 bytes result sent to driver
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 4.0 (TID 10) in 10 ms on localhost (1/4)
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 4.0 (TID 9) in 11 ms on localhost (2/4)
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 4.0 (TID 8) in 13 ms on localhost (3/4)
19/03/14 09:26:33 INFO executor.Executor: Finished task 3.0 in stage 4.0 (TID 11). 1090 bytes result sent to driver
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 4.0 (TID 11) in 14 ms on localhost (4/4)
19/03/14 09:26:33 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 4.0, whose tasks have all completed, from pool 
19/03/14 09:26:33 INFO scheduler.DAGScheduler: ShuffleMapStage 4 (groupBy at SingleReadBucket.scala:34) finished in 0.019 s
19/03/14 09:26:33 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:33 INFO scheduler.DAGScheduler: running: Set()
19/03/14 09:26:33 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 5)
19/03/14 09:26:33 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:33 INFO scheduler.DAGScheduler: Submitting ResultStage 5 (MapPartitionsRDD[7] at map at SingleReadBucket.scala:35), which has no missing parents
19/03/14 09:26:33 INFO storage.MemoryStore: Block broadcast_4 stored as values in memory (estimated size 4.6 KB, free 29.0 KB)
19/03/14 09:26:33 INFO storage.MemoryStore: Block broadcast_4_piece0 stored as bytes in memory (estimated size 2.3 KB, free 31.4 KB)
19/03/14 09:26:33 INFO storage.BlockManagerInfo: Added broadcast_4_piece0 in memory on localhost:42121 (size: 2.3 KB, free: 522.4 MB)
19/03/14 09:26:33 INFO spark.SparkContext: Created broadcast 4 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:33 INFO scheduler.DAGScheduler: Submitting 1 missing tasks from ResultStage 5 (MapPartitionsRDD[7] at map at SingleReadBucket.scala:35)
19/03/14 09:26:33 INFO scheduler.TaskSchedulerImpl: Adding task set 5.0 with 1 tasks
19/03/14 09:26:33 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 5.0 (TID 12, localhost, partition 0,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:33 INFO executor.Executor: Running task 0.0 in stage 5.0 (TID 12)
19/03/14 09:26:33 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:33 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:34 INFO executor.Executor: Finished task 0.0 in stage 5.0 (TID 12). 1171 bytes result sent to driver
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 5.0 (TID 12) in 7 ms on localhost (1/1)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: ResultStage 5 (first at ComparisonsSuite.scala:40) finished in 0.008 s
19/03/14 09:26:34 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 5.0, whose tasks have all completed, from pool 
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Job 2 finished: first at ComparisonsSuite.scala:40, took 0.037687 s
19/03/14 09:26:34 INFO spark.SparkContext: Starting job: first at ComparisonsSuite.scala:40
19/03/14 09:26:34 INFO spark.MapOutputTrackerMaster: Size of output statuses for shuffle 1 is 158 bytes
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Got job 3 (first at ComparisonsSuite.scala:40) with 3 output partitions
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Final stage: ResultStage 7 (first at ComparisonsSuite.scala:40)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 6)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Missing parents: List()
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Submitting ResultStage 7 (MapPartitionsRDD[7] at map at SingleReadBucket.scala:35), which has no missing parents
19/03/14 09:26:34 INFO storage.MemoryStore: Block broadcast_5 stored as values in memory (estimated size 4.6 KB, free 35.9 KB)
19/03/14 09:26:34 INFO storage.MemoryStore: Block broadcast_5_piece0 stored as bytes in memory (estimated size 2.3 KB, free 38.2 KB)
19/03/14 09:26:34 INFO storage.BlockManagerInfo: Added broadcast_5_piece0 in memory on localhost:42121 (size: 2.3 KB, free: 522.4 MB)
19/03/14 09:26:34 INFO spark.SparkContext: Created broadcast 5 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Submitting 3 missing tasks from ResultStage 7 (MapPartitionsRDD[7] at map at SingleReadBucket.scala:35)
19/03/14 09:26:34 INFO scheduler.TaskSchedulerImpl: Adding task set 7.0 with 3 tasks
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 7.0 (TID 13, localhost, partition 1,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 7.0 (TID 14, localhost, partition 2,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 7.0 (TID 15, localhost, partition 3,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:34 INFO executor.Executor: Running task 0.0 in stage 7.0 (TID 13)
19/03/14 09:26:34 INFO executor.Executor: Running task 1.0 in stage 7.0 (TID 14)
19/03/14 09:26:34 INFO executor.Executor: Running task 2.0 in stage 7.0 (TID 15)
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:34 INFO executor.Executor: Finished task 0.0 in stage 7.0 (TID 13). 1171 bytes result sent to driver
19/03/14 09:26:34 INFO executor.Executor: Finished task 1.0 in stage 7.0 (TID 14). 1306 bytes result sent to driver
19/03/14 09:26:34 INFO executor.Executor: Finished task 2.0 in stage 7.0 (TID 15). 1171 bytes result sent to driver
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 7.0 (TID 13) in 7 ms on localhost (1/3)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 7.0 (TID 15) in 8 ms on localhost (2/3)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 7.0 (TID 14) in 9 ms on localhost (3/3)
19/03/14 09:26:34 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 7.0, whose tasks have all completed, from pool 
19/03/14 09:26:34 INFO scheduler.DAGScheduler: ResultStage 7 (first at ComparisonsSuite.scala:40) finished in 0.010 s
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Job 3 finished: first at ComparisonsSuite.scala:40, took 0.016231 s
19/03/14 09:26:34 INFO spark.SparkContext: Starting job: first at ComparisonsSuite.scala:40
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Registering RDD 9 (groupBy at SingleReadBucket.scala:34)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Got job 4 (first at ComparisonsSuite.scala:40) with 1 output partitions
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Final stage: ResultStage 9 (first at ComparisonsSuite.scala:40)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 8)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Missing parents: List(ShuffleMapStage 8)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 8 (MapPartitionsRDD[9] at groupBy at SingleReadBucket.scala:34), which has no missing parents
19/03/14 09:26:34 INFO storage.MemoryStore: Block broadcast_6 stored as values in memory (estimated size 3.5 KB, free 41.7 KB)
19/03/14 09:26:34 INFO storage.MemoryStore: Block broadcast_6_piece0 stored as bytes in memory (estimated size 1915.0 B, free 43.6 KB)
19/03/14 09:26:34 INFO storage.BlockManagerInfo: Added broadcast_6_piece0 in memory on localhost:42121 (size: 1915.0 B, free: 522.4 MB)
19/03/14 09:26:34 INFO spark.SparkContext: Created broadcast 6 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 8 (MapPartitionsRDD[9] at groupBy at SingleReadBucket.scala:34)
19/03/14 09:26:34 INFO scheduler.TaskSchedulerImpl: Adding task set 8.0 with 4 tasks
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 8.0 (TID 16, localhost, partition 0,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 8.0 (TID 17, localhost, partition 1,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 8.0 (TID 18, localhost, partition 2,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 8.0 (TID 19, localhost, partition 3,PROCESS_LOCAL, 2144 bytes)
19/03/14 09:26:34 INFO executor.Executor: Running task 2.0 in stage 8.0 (TID 18)
19/03/14 09:26:34 INFO executor.Executor: Running task 3.0 in stage 8.0 (TID 19)
19/03/14 09:26:34 INFO executor.Executor: Running task 1.0 in stage 8.0 (TID 17)
19/03/14 09:26:34 INFO executor.Executor: Running task 0.0 in stage 8.0 (TID 16)
19/03/14 09:26:34 INFO executor.Executor: Finished task 2.0 in stage 8.0 (TID 18). 1090 bytes result sent to driver
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 8.0 (TID 18) in 8 ms on localhost (1/4)
19/03/14 09:26:34 INFO executor.Executor: Finished task 0.0 in stage 8.0 (TID 16). 1090 bytes result sent to driver
19/03/14 09:26:34 INFO executor.Executor: Finished task 1.0 in stage 8.0 (TID 17). 1090 bytes result sent to driver
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 8.0 (TID 16) in 16 ms on localhost (2/4)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 8.0 (TID 17) in 13 ms on localhost (3/4)
19/03/14 09:26:34 INFO executor.Executor: Finished task 3.0 in stage 8.0 (TID 19). 1090 bytes result sent to driver
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 8.0 (TID 19) in 16 ms on localhost (4/4)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: ShuffleMapStage 8 (groupBy at SingleReadBucket.scala:34) finished in 0.023 s
19/03/14 09:26:34 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 8.0, whose tasks have all completed, from pool 
19/03/14 09:26:34 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:34 INFO scheduler.DAGScheduler: running: Set()
19/03/14 09:26:34 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 9)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Submitting ResultStage 9 (MapPartitionsRDD[11] at map at SingleReadBucket.scala:35), which has no missing parents
19/03/14 09:26:34 INFO storage.MemoryStore: Block broadcast_7 stored as values in memory (estimated size 4.6 KB, free 48.2 KB)
19/03/14 09:26:34 INFO storage.MemoryStore: Block broadcast_7_piece0 stored as bytes in memory (estimated size 2.3 KB, free 50.5 KB)
19/03/14 09:26:34 INFO storage.BlockManagerInfo: Added broadcast_7_piece0 in memory on localhost:42121 (size: 2.3 KB, free: 522.4 MB)
19/03/14 09:26:34 INFO spark.SparkContext: Created broadcast 7 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Submitting 1 missing tasks from ResultStage 9 (MapPartitionsRDD[11] at map at SingleReadBucket.scala:35)
19/03/14 09:26:34 INFO scheduler.TaskSchedulerImpl: Adding task set 9.0 with 1 tasks
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 9.0 (TID 20, localhost, partition 0,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:34 INFO executor.Executor: Running task 0.0 in stage 9.0 (TID 20)
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:34 INFO executor.Executor: Finished task 0.0 in stage 9.0 (TID 20). 1171 bytes result sent to driver
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 9.0 (TID 20) in 8 ms on localhost (1/1)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: ResultStage 9 (first at ComparisonsSuite.scala:40) finished in 0.009 s
19/03/14 09:26:34 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 9.0, whose tasks have all completed, from pool 
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Job 4 finished: first at ComparisonsSuite.scala:40, took 0.043582 s
19/03/14 09:26:34 INFO spark.SparkContext: Starting job: first at ComparisonsSuite.scala:40
19/03/14 09:26:34 INFO spark.MapOutputTrackerMaster: Size of output statuses for shuffle 2 is 158 bytes
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Got job 5 (first at ComparisonsSuite.scala:40) with 3 output partitions
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Final stage: ResultStage 11 (first at ComparisonsSuite.scala:40)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 10)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Missing parents: List()
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Submitting ResultStage 11 (MapPartitionsRDD[11] at map at SingleReadBucket.scala:35), which has no missing parents
19/03/14 09:26:34 INFO storage.MemoryStore: Block broadcast_8 stored as values in memory (estimated size 4.6 KB, free 55.0 KB)
19/03/14 09:26:34 INFO storage.MemoryStore: Block broadcast_8_piece0 stored as bytes in memory (estimated size 2.3 KB, free 57.4 KB)
19/03/14 09:26:34 INFO storage.BlockManagerInfo: Added broadcast_8_piece0 in memory on localhost:42121 (size: 2.3 KB, free: 522.4 MB)
19/03/14 09:26:34 INFO spark.SparkContext: Created broadcast 8 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Submitting 3 missing tasks from ResultStage 11 (MapPartitionsRDD[11] at map at SingleReadBucket.scala:35)
19/03/14 09:26:34 INFO scheduler.TaskSchedulerImpl: Adding task set 11.0 with 3 tasks
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 11.0 (TID 21, localhost, partition 1,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 11.0 (TID 22, localhost, partition 2,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 11.0 (TID 23, localhost, partition 3,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:34 INFO executor.Executor: Running task 0.0 in stage 11.0 (TID 21)
19/03/14 09:26:34 INFO executor.Executor: Running task 2.0 in stage 11.0 (TID 23)
19/03/14 09:26:34 INFO executor.Executor: Running task 1.0 in stage 11.0 (TID 22)
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:34 INFO executor.Executor: Finished task 0.0 in stage 11.0 (TID 21). 1171 bytes result sent to driver
19/03/14 09:26:34 INFO executor.Executor: Finished task 2.0 in stage 11.0 (TID 23). 1171 bytes result sent to driver
19/03/14 09:26:34 INFO executor.Executor: Finished task 1.0 in stage 11.0 (TID 22). 1306 bytes result sent to driver
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 11.0 (TID 21) in 11 ms on localhost (1/3)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 11.0 (TID 23) in 10 ms on localhost (2/3)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 11.0 (TID 22) in 10 ms on localhost (3/3)
19/03/14 09:26:34 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 11.0, whose tasks have all completed, from pool 
19/03/14 09:26:34 INFO scheduler.DAGScheduler: ResultStage 11 (first at ComparisonsSuite.scala:40) finished in 0.011 s
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Job 5 finished: first at ComparisonsSuite.scala:40, took 0.021826 s
19/03/14 09:26:34 INFO spark.SparkContext: Starting job: first at ComparisonsSuite.scala:40
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Registering RDD 13 (groupBy at SingleReadBucket.scala:34)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Got job 6 (first at ComparisonsSuite.scala:40) with 1 output partitions
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Final stage: ResultStage 13 (first at ComparisonsSuite.scala:40)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 12)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Missing parents: List(ShuffleMapStage 12)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 12 (MapPartitionsRDD[13] at groupBy at SingleReadBucket.scala:34), which has no missing parents
19/03/14 09:26:34 INFO storage.MemoryStore: Block broadcast_9 stored as values in memory (estimated size 3.5 KB, free 60.9 KB)
19/03/14 09:26:34 INFO storage.MemoryStore: Block broadcast_9_piece0 stored as bytes in memory (estimated size 1914.0 B, free 62.7 KB)
19/03/14 09:26:34 INFO storage.BlockManagerInfo: Added broadcast_9_piece0 in memory on localhost:42121 (size: 1914.0 B, free: 522.4 MB)
19/03/14 09:26:34 INFO spark.SparkContext: Created broadcast 9 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 12 (MapPartitionsRDD[13] at groupBy at SingleReadBucket.scala:34)
19/03/14 09:26:34 INFO scheduler.TaskSchedulerImpl: Adding task set 12.0 with 4 tasks
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 12.0 (TID 24, localhost, partition 0,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 12.0 (TID 25, localhost, partition 1,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 12.0 (TID 26, localhost, partition 2,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 12.0 (TID 27, localhost, partition 3,PROCESS_LOCAL, 2144 bytes)
19/03/14 09:26:34 INFO executor.Executor: Running task 0.0 in stage 12.0 (TID 24)
19/03/14 09:26:34 INFO executor.Executor: Running task 1.0 in stage 12.0 (TID 25)
19/03/14 09:26:34 INFO executor.Executor: Running task 3.0 in stage 12.0 (TID 27)
19/03/14 09:26:34 INFO executor.Executor: Running task 2.0 in stage 12.0 (TID 26)
19/03/14 09:26:34 INFO executor.Executor: Finished task 0.0 in stage 12.0 (TID 24). 1090 bytes result sent to driver
19/03/14 09:26:34 INFO executor.Executor: Finished task 1.0 in stage 12.0 (TID 25). 1090 bytes result sent to driver
19/03/14 09:26:34 INFO executor.Executor: Finished task 2.0 in stage 12.0 (TID 26). 1090 bytes result sent to driver
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 12.0 (TID 24) in 12 ms on localhost (1/4)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 12.0 (TID 26) in 10 ms on localhost (2/4)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 12.0 (TID 25) in 11 ms on localhost (3/4)
19/03/14 09:26:34 INFO executor.Executor: Finished task 3.0 in stage 12.0 (TID 27). 1090 bytes result sent to driver
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 12.0 (TID 27) in 12 ms on localhost (4/4)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: ShuffleMapStage 12 (groupBy at SingleReadBucket.scala:34) finished in 0.017 s
19/03/14 09:26:34 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 12.0, whose tasks have all completed, from pool 
19/03/14 09:26:34 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:34 INFO scheduler.DAGScheduler: running: Set()
19/03/14 09:26:34 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 13)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Submitting ResultStage 13 (MapPartitionsRDD[15] at map at SingleReadBucket.scala:35), which has no missing parents
19/03/14 09:26:34 INFO storage.MemoryStore: Block broadcast_10 stored as values in memory (estimated size 4.6 KB, free 67.3 KB)
19/03/14 09:26:34 INFO storage.MemoryStore: Block broadcast_10_piece0 stored as bytes in memory (estimated size 2.3 KB, free 69.6 KB)
19/03/14 09:26:34 INFO storage.BlockManagerInfo: Added broadcast_10_piece0 in memory on localhost:42121 (size: 2.3 KB, free: 522.4 MB)
19/03/14 09:26:34 INFO spark.SparkContext: Created broadcast 10 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Submitting 1 missing tasks from ResultStage 13 (MapPartitionsRDD[15] at map at SingleReadBucket.scala:35)
19/03/14 09:26:34 INFO scheduler.TaskSchedulerImpl: Adding task set 13.0 with 1 tasks
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 13.0 (TID 28, localhost, partition 0,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:34 INFO executor.Executor: Running task 0.0 in stage 13.0 (TID 28)
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:34 INFO executor.Executor: Finished task 0.0 in stage 13.0 (TID 28). 1171 bytes result sent to driver
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 13.0 (TID 28) in 7 ms on localhost (1/1)
19/03/14 09:26:34 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 13.0, whose tasks have all completed, from pool 
19/03/14 09:26:34 INFO scheduler.DAGScheduler: ResultStage 13 (first at ComparisonsSuite.scala:40) finished in 0.007 s
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Job 6 finished: first at ComparisonsSuite.scala:40, took 0.036078 s
19/03/14 09:26:34 INFO spark.SparkContext: Starting job: first at ComparisonsSuite.scala:40
19/03/14 09:26:34 INFO spark.MapOutputTrackerMaster: Size of output statuses for shuffle 3 is 158 bytes
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Got job 7 (first at ComparisonsSuite.scala:40) with 3 output partitions
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Final stage: ResultStage 15 (first at ComparisonsSuite.scala:40)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 14)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Missing parents: List()
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Submitting ResultStage 15 (MapPartitionsRDD[15] at map at SingleReadBucket.scala:35), which has no missing parents
19/03/14 09:26:34 INFO storage.MemoryStore: Block broadcast_11 stored as values in memory (estimated size 4.6 KB, free 74.2 KB)
19/03/14 09:26:34 INFO storage.MemoryStore: Block broadcast_11_piece0 stored as bytes in memory (estimated size 2.3 KB, free 76.5 KB)
19/03/14 09:26:34 INFO storage.BlockManagerInfo: Added broadcast_11_piece0 in memory on localhost:42121 (size: 2.3 KB, free: 522.3 MB)
19/03/14 09:26:34 INFO spark.SparkContext: Created broadcast 11 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Submitting 3 missing tasks from ResultStage 15 (MapPartitionsRDD[15] at map at SingleReadBucket.scala:35)
19/03/14 09:26:34 INFO scheduler.TaskSchedulerImpl: Adding task set 15.0 with 3 tasks
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 15.0 (TID 29, localhost, partition 1,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 15.0 (TID 30, localhost, partition 2,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 15.0 (TID 31, localhost, partition 3,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:34 INFO executor.Executor: Running task 0.0 in stage 15.0 (TID 29)
19/03/14 09:26:34 INFO executor.Executor: Running task 1.0 in stage 15.0 (TID 30)
19/03/14 09:26:34 INFO executor.Executor: Running task 2.0 in stage 15.0 (TID 31)
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:34 INFO executor.Executor: Finished task 0.0 in stage 15.0 (TID 29). 1171 bytes result sent to driver
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 15.0 (TID 29) in 7 ms on localhost (1/3)
19/03/14 09:26:34 INFO executor.Executor: Finished task 2.0 in stage 15.0 (TID 31). 1171 bytes result sent to driver
19/03/14 09:26:34 INFO executor.Executor: Finished task 1.0 in stage 15.0 (TID 30). 1306 bytes result sent to driver
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 15.0 (TID 31) in 10 ms on localhost (2/3)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 15.0 (TID 30) in 11 ms on localhost (3/3)
19/03/14 09:26:34 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 15.0, whose tasks have all completed, from pool 
19/03/14 09:26:34 INFO scheduler.DAGScheduler: ResultStage 15 (first at ComparisonsSuite.scala:40) finished in 0.011 s
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Job 7 finished: first at ComparisonsSuite.scala:40, took 0.019419 s
19/03/14 09:26:34 INFO spark.SparkContext: Starting job: first at ComparisonsSuite.scala:40
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Registering RDD 17 (groupBy at SingleReadBucket.scala:34)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Got job 8 (first at ComparisonsSuite.scala:40) with 1 output partitions
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Final stage: ResultStage 17 (first at ComparisonsSuite.scala:40)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 16)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Missing parents: List(ShuffleMapStage 16)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 16 (MapPartitionsRDD[17] at groupBy at SingleReadBucket.scala:34), which has no missing parents
19/03/14 09:26:34 INFO storage.MemoryStore: Block broadcast_12 stored as values in memory (estimated size 3.5 KB, free 80.0 KB)
19/03/14 09:26:34 INFO storage.MemoryStore: Block broadcast_12_piece0 stored as bytes in memory (estimated size 1913.0 B, free 81.9 KB)
19/03/14 09:26:34 INFO storage.BlockManagerInfo: Added broadcast_12_piece0 in memory on localhost:42121 (size: 1913.0 B, free: 522.3 MB)
19/03/14 09:26:34 INFO spark.SparkContext: Created broadcast 12 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 16 (MapPartitionsRDD[17] at groupBy at SingleReadBucket.scala:34)
19/03/14 09:26:34 INFO scheduler.TaskSchedulerImpl: Adding task set 16.0 with 4 tasks
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 16.0 (TID 32, localhost, partition 0,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 16.0 (TID 33, localhost, partition 1,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 16.0 (TID 34, localhost, partition 2,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 16.0 (TID 35, localhost, partition 3,PROCESS_LOCAL, 2144 bytes)
19/03/14 09:26:34 INFO executor.Executor: Running task 1.0 in stage 16.0 (TID 33)
19/03/14 09:26:34 INFO executor.Executor: Running task 3.0 in stage 16.0 (TID 35)
19/03/14 09:26:34 INFO executor.Executor: Running task 0.0 in stage 16.0 (TID 32)
19/03/14 09:26:34 INFO executor.Executor: Running task 2.0 in stage 16.0 (TID 34)
19/03/14 09:26:34 INFO executor.Executor: Finished task 2.0 in stage 16.0 (TID 34). 1090 bytes result sent to driver
19/03/14 09:26:34 INFO executor.Executor: Finished task 0.0 in stage 16.0 (TID 32). 1090 bytes result sent to driver
19/03/14 09:26:34 INFO executor.Executor: Finished task 1.0 in stage 16.0 (TID 33). 1090 bytes result sent to driver
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 16.0 (TID 34) in 9 ms on localhost (1/4)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 16.0 (TID 33) in 13 ms on localhost (2/4)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 16.0 (TID 32) in 16 ms on localhost (3/4)
19/03/14 09:26:34 INFO executor.Executor: Finished task 3.0 in stage 16.0 (TID 35). 1090 bytes result sent to driver
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 16.0 (TID 35) in 16 ms on localhost (4/4)
19/03/14 09:26:34 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 16.0, whose tasks have all completed, from pool 
19/03/14 09:26:34 INFO scheduler.DAGScheduler: ShuffleMapStage 16 (groupBy at SingleReadBucket.scala:34) finished in 0.022 s
19/03/14 09:26:34 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:34 INFO scheduler.DAGScheduler: running: Set()
19/03/14 09:26:34 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 17)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Submitting ResultStage 17 (MapPartitionsRDD[19] at map at SingleReadBucket.scala:35), which has no missing parents
19/03/14 09:26:34 INFO storage.MemoryStore: Block broadcast_13 stored as values in memory (estimated size 4.6 KB, free 86.4 KB)
19/03/14 09:26:34 INFO storage.MemoryStore: Block broadcast_13_piece0 stored as bytes in memory (estimated size 2.3 KB, free 88.7 KB)
19/03/14 09:26:34 INFO storage.BlockManagerInfo: Added broadcast_13_piece0 in memory on localhost:42121 (size: 2.3 KB, free: 522.3 MB)
19/03/14 09:26:34 INFO spark.SparkContext: Created broadcast 13 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Submitting 1 missing tasks from ResultStage 17 (MapPartitionsRDD[19] at map at SingleReadBucket.scala:35)
19/03/14 09:26:34 INFO scheduler.TaskSchedulerImpl: Adding task set 17.0 with 1 tasks
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 17.0 (TID 36, localhost, partition 0,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:34 INFO executor.Executor: Running task 0.0 in stage 17.0 (TID 36)
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:34 INFO executor.Executor: Finished task 0.0 in stage 17.0 (TID 36). 1171 bytes result sent to driver
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 17.0 (TID 36) in 7 ms on localhost (1/1)
19/03/14 09:26:34 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 17.0, whose tasks have all completed, from pool 
19/03/14 09:26:34 INFO scheduler.DAGScheduler: ResultStage 17 (first at ComparisonsSuite.scala:40) finished in 0.007 s
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Job 8 finished: first at ComparisonsSuite.scala:40, took 0.040373 s
19/03/14 09:26:34 INFO spark.SparkContext: Starting job: first at ComparisonsSuite.scala:40
19/03/14 09:26:34 INFO spark.MapOutputTrackerMaster: Size of output statuses for shuffle 4 is 158 bytes
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Got job 9 (first at ComparisonsSuite.scala:40) with 3 output partitions
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Final stage: ResultStage 19 (first at ComparisonsSuite.scala:40)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 18)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Missing parents: List()
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Submitting ResultStage 19 (MapPartitionsRDD[19] at map at SingleReadBucket.scala:35), which has no missing parents
19/03/14 09:26:34 INFO storage.MemoryStore: Block broadcast_14 stored as values in memory (estimated size 4.6 KB, free 93.3 KB)
19/03/14 09:26:34 INFO storage.MemoryStore: Block broadcast_14_piece0 stored as bytes in memory (estimated size 2.3 KB, free 95.6 KB)
19/03/14 09:26:34 INFO storage.BlockManagerInfo: Added broadcast_14_piece0 in memory on localhost:42121 (size: 2.3 KB, free: 522.3 MB)
19/03/14 09:26:34 INFO spark.SparkContext: Created broadcast 14 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Submitting 3 missing tasks from ResultStage 19 (MapPartitionsRDD[19] at map at SingleReadBucket.scala:35)
19/03/14 09:26:34 INFO scheduler.TaskSchedulerImpl: Adding task set 19.0 with 3 tasks
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 19.0 (TID 37, localhost, partition 1,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 19.0 (TID 38, localhost, partition 2,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 19.0 (TID 39, localhost, partition 3,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:34 INFO executor.Executor: Running task 1.0 in stage 19.0 (TID 38)
19/03/14 09:26:34 INFO executor.Executor: Running task 2.0 in stage 19.0 (TID 39)
19/03/14 09:26:34 INFO executor.Executor: Running task 0.0 in stage 19.0 (TID 37)
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:34 INFO executor.Executor: Finished task 0.0 in stage 19.0 (TID 37). 1171 bytes result sent to driver
19/03/14 09:26:34 INFO executor.Executor: Finished task 1.0 in stage 19.0 (TID 38). 1306 bytes result sent to driver
19/03/14 09:26:34 INFO executor.Executor: Finished task 2.0 in stage 19.0 (TID 39). 1171 bytes result sent to driver
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 19.0 (TID 37) in 8 ms on localhost (1/3)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 19.0 (TID 38) in 8 ms on localhost (2/3)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 19.0 (TID 39) in 9 ms on localhost (3/3)
19/03/14 09:26:34 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 19.0, whose tasks have all completed, from pool 
19/03/14 09:26:34 INFO scheduler.DAGScheduler: ResultStage 19 (first at ComparisonsSuite.scala:40) finished in 0.009 s
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Job 9 finished: first at ComparisonsSuite.scala:40, took 0.016187 s
19/03/14 09:26:34 INFO spark.SparkContext: Starting job: first at ComparisonsSuite.scala:40
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Registering RDD 21 (groupBy at SingleReadBucket.scala:34)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Got job 10 (first at ComparisonsSuite.scala:40) with 1 output partitions
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Final stage: ResultStage 21 (first at ComparisonsSuite.scala:40)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 20)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Missing parents: List(ShuffleMapStage 20)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 20 (MapPartitionsRDD[21] at groupBy at SingleReadBucket.scala:34), which has no missing parents
19/03/14 09:26:34 INFO storage.MemoryStore: Block broadcast_15 stored as values in memory (estimated size 3.5 KB, free 99.1 KB)
19/03/14 09:26:34 INFO storage.MemoryStore: Block broadcast_15_piece0 stored as bytes in memory (estimated size 1914.0 B, free 101.0 KB)
19/03/14 09:26:34 INFO storage.BlockManagerInfo: Added broadcast_15_piece0 in memory on localhost:42121 (size: 1914.0 B, free: 522.3 MB)
19/03/14 09:26:34 INFO storage.BlockManagerInfo: Removed broadcast_6_piece0 on localhost:42121 in memory (size: 1915.0 B, free: 522.3 MB)
19/03/14 09:26:34 INFO spark.SparkContext: Created broadcast 15 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 20 (MapPartitionsRDD[21] at groupBy at SingleReadBucket.scala:34)
19/03/14 09:26:34 INFO scheduler.TaskSchedulerImpl: Adding task set 20.0 with 4 tasks
19/03/14 09:26:34 INFO spark.ContextCleaner: Cleaned accumulator 91
19/03/14 09:26:34 INFO spark.ContextCleaner: Cleaned shuffle 2
19/03/14 09:26:34 INFO storage.BlockManagerInfo: Removed broadcast_5_piece0 on localhost:42121 in memory (size: 2.3 KB, free: 522.3 MB)
19/03/14 09:26:34 INFO spark.ContextCleaner: Cleaned accumulator 90
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 20.0 (TID 40, localhost, partition 0,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:34 INFO storage.BlockManagerInfo: Removed broadcast_4_piece0 on localhost:42121 in memory (size: 2.3 KB, free: 522.3 MB)
19/03/14 09:26:34 INFO spark.ContextCleaner: Cleaned accumulator 89
19/03/14 09:26:34 INFO storage.BlockManagerInfo: Removed broadcast_3_piece0 on localhost:42121 in memory (size: 1912.0 B, free: 522.3 MB)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 20.0 (TID 41, localhost, partition 1,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:34 INFO spark.ContextCleaner: Cleaned accumulator 88
19/03/14 09:26:34 INFO spark.ContextCleaner: Cleaned shuffle 1
19/03/14 09:26:34 INFO storage.BlockManagerInfo: Removed broadcast_2_piece0 on localhost:42121 in memory (size: 2.3 KB, free: 522.4 MB)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 20.0 (TID 42, localhost, partition 2,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:34 INFO spark.ContextCleaner: Cleaned accumulator 87
19/03/14 09:26:34 INFO storage.BlockManagerInfo: Removed broadcast_1_piece0 on localhost:42121 in memory (size: 2.3 KB, free: 522.4 MB)
19/03/14 09:26:34 INFO spark.ContextCleaner: Cleaned accumulator 86
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 20.0 (TID 43, localhost, partition 3,PROCESS_LOCAL, 2144 bytes)
19/03/14 09:26:34 INFO storage.BlockManagerInfo: Removed broadcast_0_piece0 on localhost:42121 in memory (size: 1915.0 B, free: 522.4 MB)
19/03/14 09:26:34 INFO executor.Executor: Running task 1.0 in stage 20.0 (TID 41)
19/03/14 09:26:34 INFO executor.Executor: Running task 3.0 in stage 20.0 (TID 43)
19/03/14 09:26:34 INFO executor.Executor: Running task 2.0 in stage 20.0 (TID 42)
19/03/14 09:26:34 INFO executor.Executor: Running task 0.0 in stage 20.0 (TID 40)
19/03/14 09:26:34 INFO spark.ContextCleaner: Cleaned accumulator 85
19/03/14 09:26:34 INFO spark.ContextCleaner: Cleaned shuffle 0
19/03/14 09:26:34 INFO storage.BlockManagerInfo: Removed broadcast_14_piece0 on localhost:42121 in memory (size: 2.3 KB, free: 522.4 MB)
19/03/14 09:26:34 INFO spark.ContextCleaner: Cleaned accumulator 99
19/03/14 09:26:34 INFO storage.BlockManagerInfo: Removed broadcast_13_piece0 on localhost:42121 in memory (size: 2.3 KB, free: 522.4 MB)
19/03/14 09:26:34 INFO spark.ContextCleaner: Cleaned accumulator 98
19/03/14 09:26:34 INFO storage.BlockManagerInfo: Removed broadcast_12_piece0 on localhost:42121 in memory (size: 1913.0 B, free: 522.4 MB)
19/03/14 09:26:34 INFO spark.ContextCleaner: Cleaned accumulator 97
19/03/14 09:26:34 INFO spark.ContextCleaner: Cleaned shuffle 4
19/03/14 09:26:34 INFO executor.Executor: Finished task 2.0 in stage 20.0 (TID 42). 1090 bytes result sent to driver
19/03/14 09:26:34 INFO executor.Executor: Finished task 1.0 in stage 20.0 (TID 41). 1090 bytes result sent to driver
19/03/14 09:26:34 INFO storage.BlockManagerInfo: Removed broadcast_11_piece0 on localhost:42121 in memory (size: 2.3 KB, free: 522.4 MB)
19/03/14 09:26:34 INFO spark.ContextCleaner: Cleaned accumulator 96
19/03/14 09:26:34 INFO storage.BlockManagerInfo: Removed broadcast_10_piece0 on localhost:42121 in memory (size: 2.3 KB, free: 522.4 MB)
19/03/14 09:26:34 INFO executor.Executor: Finished task 0.0 in stage 20.0 (TID 40). 1090 bytes result sent to driver
19/03/14 09:26:34 INFO spark.ContextCleaner: Cleaned accumulator 95
19/03/14 09:26:34 INFO storage.BlockManagerInfo: Removed broadcast_9_piece0 on localhost:42121 in memory (size: 1914.0 B, free: 522.4 MB)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 20.0 (TID 41) in 10 ms on localhost (1/4)
19/03/14 09:26:34 INFO spark.ContextCleaner: Cleaned accumulator 94
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 20.0 (TID 42) in 9 ms on localhost (2/4)
19/03/14 09:26:34 INFO spark.ContextCleaner: Cleaned shuffle 3
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 20.0 (TID 40) in 12 ms on localhost (3/4)
19/03/14 09:26:34 INFO storage.BlockManagerInfo: Removed broadcast_8_piece0 on localhost:42121 in memory (size: 2.3 KB, free: 522.4 MB)
19/03/14 09:26:34 INFO spark.ContextCleaner: Cleaned accumulator 93
19/03/14 09:26:34 INFO storage.BlockManagerInfo: Removed broadcast_7_piece0 on localhost:42121 in memory (size: 2.3 KB, free: 522.4 MB)
19/03/14 09:26:34 INFO spark.ContextCleaner: Cleaned accumulator 92
19/03/14 09:26:34 INFO executor.Executor: Finished task 3.0 in stage 20.0 (TID 43). 1090 bytes result sent to driver
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 20.0 (TID 43) in 12 ms on localhost (4/4)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: ShuffleMapStage 20 (groupBy at SingleReadBucket.scala:34) finished in 0.017 s
19/03/14 09:26:34 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 20.0, whose tasks have all completed, from pool 
19/03/14 09:26:34 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:34 INFO scheduler.DAGScheduler: running: Set()
19/03/14 09:26:34 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 21)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Submitting ResultStage 21 (MapPartitionsRDD[23] at map at SingleReadBucket.scala:35), which has no missing parents
19/03/14 09:26:34 INFO storage.MemoryStore: Block broadcast_16 stored as values in memory (estimated size 4.6 KB, free 9.9 KB)
19/03/14 09:26:34 INFO storage.MemoryStore: Block broadcast_16_piece0 stored as bytes in memory (estimated size 2.3 KB, free 12.2 KB)
19/03/14 09:26:34 INFO storage.BlockManagerInfo: Added broadcast_16_piece0 in memory on localhost:42121 (size: 2.3 KB, free: 522.4 MB)
19/03/14 09:26:34 INFO spark.SparkContext: Created broadcast 16 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Submitting 1 missing tasks from ResultStage 21 (MapPartitionsRDD[23] at map at SingleReadBucket.scala:35)
19/03/14 09:26:34 INFO scheduler.TaskSchedulerImpl: Adding task set 21.0 with 1 tasks
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 21.0 (TID 44, localhost, partition 0,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:34 INFO executor.Executor: Running task 0.0 in stage 21.0 (TID 44)
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:34 INFO executor.Executor: Finished task 0.0 in stage 21.0 (TID 44). 1171 bytes result sent to driver
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 21.0 (TID 44) in 6 ms on localhost (1/1)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: ResultStage 21 (first at ComparisonsSuite.scala:40) finished in 0.006 s
19/03/14 09:26:34 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 21.0, whose tasks have all completed, from pool 
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Job 10 finished: first at ComparisonsSuite.scala:40, took 0.044250 s
19/03/14 09:26:34 INFO spark.SparkContext: Starting job: first at ComparisonsSuite.scala:40
19/03/14 09:26:34 INFO spark.MapOutputTrackerMaster: Size of output statuses for shuffle 5 is 158 bytes
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Got job 11 (first at ComparisonsSuite.scala:40) with 3 output partitions
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Final stage: ResultStage 23 (first at ComparisonsSuite.scala:40)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 22)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Missing parents: List()
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Submitting ResultStage 23 (MapPartitionsRDD[23] at map at SingleReadBucket.scala:35), which has no missing parents
19/03/14 09:26:34 INFO storage.MemoryStore: Block broadcast_17 stored as values in memory (estimated size 4.6 KB, free 16.8 KB)
19/03/14 09:26:34 INFO storage.MemoryStore: Block broadcast_17_piece0 stored as bytes in memory (estimated size 2.3 KB, free 19.1 KB)
19/03/14 09:26:34 INFO storage.BlockManagerInfo: Added broadcast_17_piece0 in memory on localhost:42121 (size: 2.3 KB, free: 522.4 MB)
19/03/14 09:26:34 INFO spark.SparkContext: Created broadcast 17 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Submitting 3 missing tasks from ResultStage 23 (MapPartitionsRDD[23] at map at SingleReadBucket.scala:35)
19/03/14 09:26:34 INFO scheduler.TaskSchedulerImpl: Adding task set 23.0 with 3 tasks
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 23.0 (TID 45, localhost, partition 1,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 23.0 (TID 46, localhost, partition 2,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 23.0 (TID 47, localhost, partition 3,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:34 INFO executor.Executor: Running task 0.0 in stage 23.0 (TID 45)
19/03/14 09:26:34 INFO executor.Executor: Running task 1.0 in stage 23.0 (TID 46)
19/03/14 09:26:34 INFO executor.Executor: Running task 2.0 in stage 23.0 (TID 47)
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:34 INFO executor.Executor: Finished task 0.0 in stage 23.0 (TID 45). 1171 bytes result sent to driver
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 23.0 (TID 45) in 6 ms on localhost (1/3)
19/03/14 09:26:34 INFO executor.Executor: Finished task 2.0 in stage 23.0 (TID 47). 1171 bytes result sent to driver
19/03/14 09:26:34 INFO executor.Executor: Finished task 1.0 in stage 23.0 (TID 46). 1306 bytes result sent to driver
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 23.0 (TID 47) in 9 ms on localhost (2/3)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 23.0 (TID 46) in 10 ms on localhost (3/3)
19/03/14 09:26:34 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 23.0, whose tasks have all completed, from pool 
19/03/14 09:26:34 INFO scheduler.DAGScheduler: ResultStage 23 (first at ComparisonsSuite.scala:40) finished in 0.011 s
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Job 11 finished: first at ComparisonsSuite.scala:40, took 0.015747 s
19/03/14 09:26:34 INFO spark.SparkContext: Starting job: first at ComparisonsSuite.scala:40
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Registering RDD 25 (groupBy at SingleReadBucket.scala:34)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Got job 12 (first at ComparisonsSuite.scala:40) with 1 output partitions
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Final stage: ResultStage 25 (first at ComparisonsSuite.scala:40)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 24)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Missing parents: List(ShuffleMapStage 24)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 24 (MapPartitionsRDD[25] at groupBy at SingleReadBucket.scala:34), which has no missing parents
19/03/14 09:26:34 INFO storage.MemoryStore: Block broadcast_18 stored as values in memory (estimated size 3.5 KB, free 22.6 KB)
19/03/14 09:26:34 INFO storage.MemoryStore: Block broadcast_18_piece0 stored as bytes in memory (estimated size 1915.0 B, free 24.5 KB)
19/03/14 09:26:34 INFO storage.BlockManagerInfo: Added broadcast_18_piece0 in memory on localhost:42121 (size: 1915.0 B, free: 522.4 MB)
19/03/14 09:26:34 INFO spark.SparkContext: Created broadcast 18 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 24 (MapPartitionsRDD[25] at groupBy at SingleReadBucket.scala:34)
19/03/14 09:26:34 INFO scheduler.TaskSchedulerImpl: Adding task set 24.0 with 4 tasks
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 24.0 (TID 48, localhost, partition 0,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 24.0 (TID 49, localhost, partition 1,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 24.0 (TID 50, localhost, partition 2,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 24.0 (TID 51, localhost, partition 3,PROCESS_LOCAL, 2144 bytes)
19/03/14 09:26:34 INFO executor.Executor: Running task 0.0 in stage 24.0 (TID 48)
19/03/14 09:26:34 INFO executor.Executor: Running task 2.0 in stage 24.0 (TID 50)
19/03/14 09:26:34 INFO executor.Executor: Running task 3.0 in stage 24.0 (TID 51)
19/03/14 09:26:34 INFO executor.Executor: Running task 1.0 in stage 24.0 (TID 49)
19/03/14 09:26:34 INFO executor.Executor: Finished task 2.0 in stage 24.0 (TID 50). 1090 bytes result sent to driver
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 24.0 (TID 50) in 8 ms on localhost (1/4)
19/03/14 09:26:34 INFO executor.Executor: Finished task 0.0 in stage 24.0 (TID 48). 1090 bytes result sent to driver
19/03/14 09:26:34 INFO executor.Executor: Finished task 1.0 in stage 24.0 (TID 49). 1090 bytes result sent to driver
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 24.0 (TID 49) in 11 ms on localhost (2/4)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 24.0 (TID 48) in 12 ms on localhost (3/4)
19/03/14 09:26:34 INFO executor.Executor: Finished task 3.0 in stage 24.0 (TID 51). 1090 bytes result sent to driver
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 24.0 (TID 51) in 17 ms on localhost (4/4)
19/03/14 09:26:34 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 24.0, whose tasks have all completed, from pool 
19/03/14 09:26:34 INFO scheduler.DAGScheduler: ShuffleMapStage 24 (groupBy at SingleReadBucket.scala:34) finished in 0.020 s
19/03/14 09:26:34 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:34 INFO scheduler.DAGScheduler: running: Set()
19/03/14 09:26:34 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 25)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Submitting ResultStage 25 (MapPartitionsRDD[27] at map at SingleReadBucket.scala:35), which has no missing parents
19/03/14 09:26:34 INFO storage.MemoryStore: Block broadcast_19 stored as values in memory (estimated size 4.6 KB, free 29.0 KB)
19/03/14 09:26:34 INFO storage.MemoryStore: Block broadcast_19_piece0 stored as bytes in memory (estimated size 2.3 KB, free 31.4 KB)
19/03/14 09:26:34 INFO storage.BlockManagerInfo: Added broadcast_19_piece0 in memory on localhost:42121 (size: 2.3 KB, free: 522.4 MB)
19/03/14 09:26:34 INFO spark.SparkContext: Created broadcast 19 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Submitting 1 missing tasks from ResultStage 25 (MapPartitionsRDD[27] at map at SingleReadBucket.scala:35)
19/03/14 09:26:34 INFO scheduler.TaskSchedulerImpl: Adding task set 25.0 with 1 tasks
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 25.0 (TID 52, localhost, partition 0,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:34 INFO executor.Executor: Running task 0.0 in stage 25.0 (TID 52)
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:34 INFO executor.Executor: Finished task 0.0 in stage 25.0 (TID 52). 1171 bytes result sent to driver
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 25.0 (TID 52) in 10 ms on localhost (1/1)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: ResultStage 25 (first at ComparisonsSuite.scala:40) finished in 0.010 s
19/03/14 09:26:34 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 25.0, whose tasks have all completed, from pool 
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Job 12 finished: first at ComparisonsSuite.scala:40, took 0.040223 s
19/03/14 09:26:34 INFO spark.SparkContext: Starting job: first at ComparisonsSuite.scala:40
19/03/14 09:26:34 INFO spark.MapOutputTrackerMaster: Size of output statuses for shuffle 6 is 158 bytes
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Got job 13 (first at ComparisonsSuite.scala:40) with 3 output partitions
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Final stage: ResultStage 27 (first at ComparisonsSuite.scala:40)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 26)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Missing parents: List()
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Submitting ResultStage 27 (MapPartitionsRDD[27] at map at SingleReadBucket.scala:35), which has no missing parents
19/03/14 09:26:34 INFO storage.MemoryStore: Block broadcast_20 stored as values in memory (estimated size 4.6 KB, free 35.9 KB)
19/03/14 09:26:34 INFO storage.MemoryStore: Block broadcast_20_piece0 stored as bytes in memory (estimated size 2.3 KB, free 38.2 KB)
19/03/14 09:26:34 INFO storage.BlockManagerInfo: Added broadcast_20_piece0 in memory on localhost:42121 (size: 2.3 KB, free: 522.4 MB)
19/03/14 09:26:34 INFO spark.SparkContext: Created broadcast 20 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Submitting 3 missing tasks from ResultStage 27 (MapPartitionsRDD[27] at map at SingleReadBucket.scala:35)
19/03/14 09:26:34 INFO scheduler.TaskSchedulerImpl: Adding task set 27.0 with 3 tasks
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 27.0 (TID 53, localhost, partition 1,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 27.0 (TID 54, localhost, partition 2,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 27.0 (TID 55, localhost, partition 3,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:34 INFO executor.Executor: Running task 1.0 in stage 27.0 (TID 54)
19/03/14 09:26:34 INFO executor.Executor: Running task 2.0 in stage 27.0 (TID 55)
19/03/14 09:26:34 INFO executor.Executor: Running task 0.0 in stage 27.0 (TID 53)
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:34 INFO executor.Executor: Finished task 2.0 in stage 27.0 (TID 55). 1171 bytes result sent to driver
19/03/14 09:26:34 INFO executor.Executor: Finished task 1.0 in stage 27.0 (TID 54). 1306 bytes result sent to driver
19/03/14 09:26:34 INFO executor.Executor: Finished task 0.0 in stage 27.0 (TID 53). 1171 bytes result sent to driver
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 27.0 (TID 55) in 8 ms on localhost (1/3)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 27.0 (TID 53) in 10 ms on localhost (2/3)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 27.0 (TID 54) in 11 ms on localhost (3/3)
19/03/14 09:26:34 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 27.0, whose tasks have all completed, from pool 
19/03/14 09:26:34 INFO scheduler.DAGScheduler: ResultStage 27 (first at ComparisonsSuite.scala:40) finished in 0.011 s
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Job 13 finished: first at ComparisonsSuite.scala:40, took 0.017118 s
19/03/14 09:26:34 INFO spark.SparkContext: Starting job: first at ComparisonsSuite.scala:40
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Registering RDD 29 (groupBy at SingleReadBucket.scala:34)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Got job 14 (first at ComparisonsSuite.scala:40) with 1 output partitions
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Final stage: ResultStage 29 (first at ComparisonsSuite.scala:40)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 28)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Missing parents: List(ShuffleMapStage 28)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 28 (MapPartitionsRDD[29] at groupBy at SingleReadBucket.scala:34), which has no missing parents
19/03/14 09:26:34 INFO storage.MemoryStore: Block broadcast_21 stored as values in memory (estimated size 3.5 KB, free 41.7 KB)
19/03/14 09:26:34 INFO storage.MemoryStore: Block broadcast_21_piece0 stored as bytes in memory (estimated size 1913.0 B, free 43.6 KB)
19/03/14 09:26:34 INFO storage.BlockManagerInfo: Added broadcast_21_piece0 in memory on localhost:42121 (size: 1913.0 B, free: 522.4 MB)
19/03/14 09:26:34 INFO spark.SparkContext: Created broadcast 21 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 28 (MapPartitionsRDD[29] at groupBy at SingleReadBucket.scala:34)
19/03/14 09:26:34 INFO scheduler.TaskSchedulerImpl: Adding task set 28.0 with 4 tasks
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 28.0 (TID 56, localhost, partition 0,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 28.0 (TID 57, localhost, partition 1,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 28.0 (TID 58, localhost, partition 2,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 28.0 (TID 59, localhost, partition 3,PROCESS_LOCAL, 2144 bytes)
19/03/14 09:26:34 INFO executor.Executor: Running task 3.0 in stage 28.0 (TID 59)
19/03/14 09:26:34 INFO executor.Executor: Running task 0.0 in stage 28.0 (TID 56)
19/03/14 09:26:34 INFO executor.Executor: Running task 2.0 in stage 28.0 (TID 58)
19/03/14 09:26:34 INFO executor.Executor: Running task 1.0 in stage 28.0 (TID 57)
19/03/14 09:26:34 INFO executor.Executor: Finished task 1.0 in stage 28.0 (TID 57). 1090 bytes result sent to driver
19/03/14 09:26:34 INFO executor.Executor: Finished task 2.0 in stage 28.0 (TID 58). 1090 bytes result sent to driver
19/03/14 09:26:34 INFO executor.Executor: Finished task 0.0 in stage 28.0 (TID 56). 1090 bytes result sent to driver
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 28.0 (TID 57) in 10 ms on localhost (1/4)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 28.0 (TID 58) in 9 ms on localhost (2/4)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 28.0 (TID 56) in 12 ms on localhost (3/4)
19/03/14 09:26:34 INFO executor.Executor: Finished task 3.0 in stage 28.0 (TID 59). 1090 bytes result sent to driver
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 28.0 (TID 59) in 12 ms on localhost (4/4)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: ShuffleMapStage 28 (groupBy at SingleReadBucket.scala:34) finished in 0.017 s
19/03/14 09:26:34 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 28.0, whose tasks have all completed, from pool 
19/03/14 09:26:34 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:34 INFO scheduler.DAGScheduler: running: Set()
19/03/14 09:26:34 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 29)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Submitting ResultStage 29 (MapPartitionsRDD[31] at map at SingleReadBucket.scala:35), which has no missing parents
19/03/14 09:26:34 INFO storage.MemoryStore: Block broadcast_22 stored as values in memory (estimated size 4.6 KB, free 48.2 KB)
19/03/14 09:26:34 INFO storage.MemoryStore: Block broadcast_22_piece0 stored as bytes in memory (estimated size 2.3 KB, free 50.5 KB)
19/03/14 09:26:34 INFO storage.BlockManagerInfo: Added broadcast_22_piece0 in memory on localhost:42121 (size: 2.3 KB, free: 522.4 MB)
19/03/14 09:26:34 INFO spark.SparkContext: Created broadcast 22 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Submitting 1 missing tasks from ResultStage 29 (MapPartitionsRDD[31] at map at SingleReadBucket.scala:35)
19/03/14 09:26:34 INFO scheduler.TaskSchedulerImpl: Adding task set 29.0 with 1 tasks
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 29.0 (TID 60, localhost, partition 0,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:34 INFO executor.Executor: Running task 0.0 in stage 29.0 (TID 60)
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:34 INFO executor.Executor: Finished task 0.0 in stage 29.0 (TID 60). 1171 bytes result sent to driver
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 29.0 (TID 60) in 9 ms on localhost (1/1)
19/03/14 09:26:34 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 29.0, whose tasks have all completed, from pool 
19/03/14 09:26:34 INFO scheduler.DAGScheduler: ResultStage 29 (first at ComparisonsSuite.scala:40) finished in 0.009 s
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Job 14 finished: first at ComparisonsSuite.scala:40, took 0.037469 s
19/03/14 09:26:34 INFO spark.SparkContext: Starting job: first at ComparisonsSuite.scala:40
19/03/14 09:26:34 INFO spark.MapOutputTrackerMaster: Size of output statuses for shuffle 7 is 158 bytes
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Got job 15 (first at ComparisonsSuite.scala:40) with 3 output partitions
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Final stage: ResultStage 31 (first at ComparisonsSuite.scala:40)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 30)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Missing parents: List()
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Submitting ResultStage 31 (MapPartitionsRDD[31] at map at SingleReadBucket.scala:35), which has no missing parents
19/03/14 09:26:34 INFO storage.MemoryStore: Block broadcast_23 stored as values in memory (estimated size 4.6 KB, free 55.0 KB)
19/03/14 09:26:34 INFO storage.MemoryStore: Block broadcast_23_piece0 stored as bytes in memory (estimated size 2.3 KB, free 57.4 KB)
19/03/14 09:26:34 INFO storage.BlockManagerInfo: Added broadcast_23_piece0 in memory on localhost:42121 (size: 2.3 KB, free: 522.4 MB)
19/03/14 09:26:34 INFO spark.SparkContext: Created broadcast 23 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Submitting 3 missing tasks from ResultStage 31 (MapPartitionsRDD[31] at map at SingleReadBucket.scala:35)
19/03/14 09:26:34 INFO scheduler.TaskSchedulerImpl: Adding task set 31.0 with 3 tasks
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 31.0 (TID 61, localhost, partition 1,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 31.0 (TID 62, localhost, partition 2,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 31.0 (TID 63, localhost, partition 3,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:34 INFO executor.Executor: Running task 0.0 in stage 31.0 (TID 61)
19/03/14 09:26:34 INFO executor.Executor: Running task 2.0 in stage 31.0 (TID 63)
19/03/14 09:26:34 INFO executor.Executor: Running task 1.0 in stage 31.0 (TID 62)
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:34 INFO executor.Executor: Finished task 0.0 in stage 31.0 (TID 61). 1171 bytes result sent to driver
19/03/14 09:26:34 INFO executor.Executor: Finished task 2.0 in stage 31.0 (TID 63). 1171 bytes result sent to driver
19/03/14 09:26:34 INFO executor.Executor: Finished task 1.0 in stage 31.0 (TID 62). 1306 bytes result sent to driver
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 31.0 (TID 61) in 7 ms on localhost (1/3)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 31.0 (TID 63) in 7 ms on localhost (2/3)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 31.0 (TID 62) in 8 ms on localhost (3/3)
19/03/14 09:26:34 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 31.0, whose tasks have all completed, from pool 
19/03/14 09:26:34 INFO scheduler.DAGScheduler: ResultStage 31 (first at ComparisonsSuite.scala:40) finished in 0.009 s
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Job 15 finished: first at ComparisonsSuite.scala:40, took 0.015099 s
19/03/14 09:26:34 INFO spark.MapOutputTrackerMasterEndpoint: MapOutputTrackerMasterEndpoint stopped!
19/03/14 09:26:34 INFO storage.MemoryStore: MemoryStore cleared
19/03/14 09:26:34 INFO storage.BlockManager: BlockManager stopped
19/03/14 09:26:34 INFO storage.BlockManagerMaster: BlockManagerMaster stopped
19/03/14 09:26:34 INFO scheduler.OutputCommitCoordinator$OutputCommitCoordinatorEndpoint: OutputCommitCoordinator stopped!
19/03/14 09:26:34 INFO remote.RemoteActorRefProvider$RemotingTerminator: Shutting down remote daemon.
19/03/14 09:26:34 INFO remote.RemoteActorRefProvider$RemotingTerminator: Remote daemon shut down; proceeding with flushing remote transports.
19/03/14 09:26:34 INFO spark.SparkContext: Successfully stopped SparkContext
19/03/14 09:26:34 INFO spark.SparkContext: Running Spark version 1.6.1
19/03/14 09:26:34 INFO remote.RemoteActorRefProvider$RemotingTerminator: Remoting shut down.
19/03/14 09:26:34 INFO spark.SecurityManager: Changing view acls to: jenkins
19/03/14 09:26:34 INFO spark.SecurityManager: Changing modify acls to: jenkins
19/03/14 09:26:34 INFO spark.SecurityManager: SecurityManager: authentication disabled; ui acls disabled; users with view permissions: Set(jenkins); users with modify permissions: Set(jenkins)
19/03/14 09:26:34 INFO util.Utils: Successfully started service 'sparkDriver' on port 50337.
19/03/14 09:26:34 INFO slf4j.Slf4jLogger: Slf4jLogger started
19/03/14 09:26:34 INFO Remoting: Starting remoting
19/03/14 09:26:34 INFO Remoting: Remoting started; listening on addresses :[akka.tcp://sparkDriverActorSystem@localhost:50338]
19/03/14 09:26:34 INFO util.Utils: Successfully started service 'sparkDriverActorSystem' on port 50338.
19/03/14 09:26:34 INFO spark.SparkEnv: Registering MapOutputTracker
19/03/14 09:26:34 INFO spark.SparkEnv: Registering BlockManagerMaster
19/03/14 09:26:34 INFO storage.DiskBlockManager: Created local directory at /tmp/blockmgr-6549cd40-228f-4f08-98c7-db426f0f0d59
19/03/14 09:26:34 INFO storage.MemoryStore: MemoryStore started with capacity 522.0 MB
19/03/14 09:26:34 INFO spark.SparkEnv: Registering OutputCommitCoordinator
19/03/14 09:26:34 INFO executor.Executor: Starting executor ID driver on host localhost
19/03/14 09:26:34 INFO util.Utils: Successfully started service 'org.apache.spark.network.netty.NettyBlockTransferService' on port 34632.
19/03/14 09:26:34 INFO netty.NettyBlockTransferService: Server created on 34632
19/03/14 09:26:34 INFO storage.BlockManagerMaster: Trying to register BlockManager
19/03/14 09:26:34 INFO storage.BlockManagerMasterEndpoint: Registering block manager localhost:34632 with 522.0 MB RAM, BlockManagerId(driver, localhost, 34632)
19/03/14 09:26:34 INFO storage.BlockManagerMaster: Registered BlockManager
19/03/14 09:26:34 INFO spark.MapOutputTrackerMasterEndpoint: MapOutputTrackerMasterEndpoint stopped!
19/03/14 09:26:34 INFO storage.MemoryStore: MemoryStore cleared
19/03/14 09:26:34 INFO storage.BlockManager: BlockManager stopped
19/03/14 09:26:34 INFO storage.BlockManagerMaster: BlockManagerMaster stopped
19/03/14 09:26:34 INFO scheduler.OutputCommitCoordinator$OutputCommitCoordinatorEndpoint: OutputCommitCoordinator stopped!
19/03/14 09:26:34 INFO remote.RemoteActorRefProvider$RemotingTerminator: Shutting down remote daemon.
19/03/14 09:26:34 INFO remote.RemoteActorRefProvider$RemotingTerminator: Remote daemon shut down; proceeding with flushing remote transports.
19/03/14 09:26:34 INFO spark.SparkContext: Successfully stopped SparkContext
- Dupe mismatches found
19/03/14 09:26:34 INFO spark.SparkContext: Running Spark version 1.6.1
19/03/14 09:26:34 INFO remote.RemoteActorRefProvider$RemotingTerminator: Remoting shut down.
19/03/14 09:26:34 INFO spark.SecurityManager: Changing view acls to: jenkins
19/03/14 09:26:34 INFO spark.SecurityManager: Changing modify acls to: jenkins
19/03/14 09:26:34 INFO spark.SecurityManager: SecurityManager: authentication disabled; ui acls disabled; users with view permissions: Set(jenkins); users with modify permissions: Set(jenkins)
19/03/14 09:26:34 INFO util.Utils: Successfully started service 'sparkDriver' on port 58603.
19/03/14 09:26:34 INFO slf4j.Slf4jLogger: Slf4jLogger started
19/03/14 09:26:34 INFO Remoting: Starting remoting
19/03/14 09:26:34 INFO Remoting: Remoting started; listening on addresses :[akka.tcp://sparkDriverActorSystem@localhost:58604]
19/03/14 09:26:34 INFO util.Utils: Successfully started service 'sparkDriverActorSystem' on port 58604.
19/03/14 09:26:34 INFO spark.SparkEnv: Registering MapOutputTracker
19/03/14 09:26:34 INFO spark.SparkEnv: Registering BlockManagerMaster
19/03/14 09:26:34 INFO storage.DiskBlockManager: Created local directory at /tmp/blockmgr-7dffe0d8-4a5f-4fe4-b678-ae5cdcf473b1
19/03/14 09:26:34 INFO storage.MemoryStore: MemoryStore started with capacity 522.0 MB
19/03/14 09:26:34 INFO spark.SparkEnv: Registering OutputCommitCoordinator
19/03/14 09:26:34 INFO executor.Executor: Starting executor ID driver on host localhost
19/03/14 09:26:34 INFO util.Utils: Successfully started service 'org.apache.spark.network.netty.NettyBlockTransferService' on port 37380.
19/03/14 09:26:34 INFO netty.NettyBlockTransferService: Server created on 37380
19/03/14 09:26:34 INFO storage.BlockManagerMaster: Trying to register BlockManager
19/03/14 09:26:34 INFO storage.BlockManagerMasterEndpoint: Registering block manager localhost:37380 with 522.0 MB RAM, BlockManagerId(driver, localhost, 37380)
19/03/14 09:26:34 INFO storage.BlockManagerMaster: Registered BlockManager
19/03/14 09:26:34 INFO spark.SparkContext: Starting job: first at ComparisonsSuite.scala:40
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Registering RDD 1 (groupBy at SingleReadBucket.scala:34)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Got job 0 (first at ComparisonsSuite.scala:40) with 1 output partitions
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Final stage: ResultStage 1 (first at ComparisonsSuite.scala:40)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 0)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Missing parents: List(ShuffleMapStage 0)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 0 (MapPartitionsRDD[1] at groupBy at SingleReadBucket.scala:34), which has no missing parents
19/03/14 09:26:34 INFO storage.MemoryStore: Block broadcast_0 stored as values in memory (estimated size 3.5 KB, free 3.5 KB)
19/03/14 09:26:34 INFO storage.MemoryStore: Block broadcast_0_piece0 stored as bytes in memory (estimated size 1915.0 B, free 5.4 KB)
19/03/14 09:26:34 INFO storage.BlockManagerInfo: Added broadcast_0_piece0 in memory on localhost:37380 (size: 1915.0 B, free: 522.0 MB)
19/03/14 09:26:34 INFO spark.SparkContext: Created broadcast 0 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 0 (MapPartitionsRDD[1] at groupBy at SingleReadBucket.scala:34)
19/03/14 09:26:34 INFO scheduler.TaskSchedulerImpl: Adding task set 0.0 with 4 tasks
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 0.0 (TID 0, localhost, partition 0,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 0.0 (TID 1, localhost, partition 1,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 0.0 (TID 2, localhost, partition 2,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 0.0 (TID 3, localhost, partition 3,PROCESS_LOCAL, 2144 bytes)
19/03/14 09:26:34 INFO executor.Executor: Running task 0.0 in stage 0.0 (TID 0)
19/03/14 09:26:34 INFO executor.Executor: Running task 1.0 in stage 0.0 (TID 1)
19/03/14 09:26:34 INFO executor.Executor: Running task 2.0 in stage 0.0 (TID 2)
19/03/14 09:26:34 INFO executor.Executor: Running task 3.0 in stage 0.0 (TID 3)
19/03/14 09:26:34 INFO executor.Executor: Finished task 2.0 in stage 0.0 (TID 2). 1090 bytes result sent to driver
19/03/14 09:26:34 INFO executor.Executor: Finished task 1.0 in stage 0.0 (TID 1). 1090 bytes result sent to driver
19/03/14 09:26:34 INFO executor.Executor: Finished task 0.0 in stage 0.0 (TID 0). 1090 bytes result sent to driver
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 0.0 (TID 2) in 11 ms on localhost (1/4)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 0.0 (TID 1) in 12 ms on localhost (2/4)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 0.0 (TID 0) in 14 ms on localhost (3/4)
19/03/14 09:26:34 INFO executor.Executor: Finished task 3.0 in stage 0.0 (TID 3). 1090 bytes result sent to driver
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 0.0 (TID 3) in 14 ms on localhost (4/4)
19/03/14 09:26:34 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 0.0, whose tasks have all completed, from pool 
19/03/14 09:26:34 INFO scheduler.DAGScheduler: ShuffleMapStage 0 (groupBy at SingleReadBucket.scala:34) finished in 0.018 s
19/03/14 09:26:34 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:34 INFO scheduler.DAGScheduler: running: Set()
19/03/14 09:26:34 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 1)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Submitting ResultStage 1 (MapPartitionsRDD[3] at map at SingleReadBucket.scala:35), which has no missing parents
19/03/14 09:26:34 INFO storage.MemoryStore: Block broadcast_1 stored as values in memory (estimated size 4.6 KB, free 9.9 KB)
19/03/14 09:26:34 INFO storage.MemoryStore: Block broadcast_1_piece0 stored as bytes in memory (estimated size 2.3 KB, free 12.2 KB)
19/03/14 09:26:34 INFO storage.BlockManagerInfo: Added broadcast_1_piece0 in memory on localhost:37380 (size: 2.3 KB, free: 522.0 MB)
19/03/14 09:26:34 INFO spark.SparkContext: Created broadcast 1 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Submitting 1 missing tasks from ResultStage 1 (MapPartitionsRDD[3] at map at SingleReadBucket.scala:35)
19/03/14 09:26:34 INFO scheduler.TaskSchedulerImpl: Adding task set 1.0 with 1 tasks
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 1.0 (TID 4, localhost, partition 0,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:34 INFO executor.Executor: Running task 0.0 in stage 1.0 (TID 4)
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:34 INFO executor.Executor: Finished task 0.0 in stage 1.0 (TID 4). 1171 bytes result sent to driver
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 1.0 (TID 4) in 8 ms on localhost (1/1)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: ResultStage 1 (first at ComparisonsSuite.scala:40) finished in 0.008 s
19/03/14 09:26:34 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 1.0, whose tasks have all completed, from pool 
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Job 0 finished: first at ComparisonsSuite.scala:40, took 0.039169 s
19/03/14 09:26:34 INFO spark.SparkContext: Starting job: first at ComparisonsSuite.scala:40
19/03/14 09:26:34 INFO spark.MapOutputTrackerMaster: Size of output statuses for shuffle 0 is 158 bytes
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Got job 1 (first at ComparisonsSuite.scala:40) with 3 output partitions
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Final stage: ResultStage 3 (first at ComparisonsSuite.scala:40)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 2)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Missing parents: List()
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Submitting ResultStage 3 (MapPartitionsRDD[3] at map at SingleReadBucket.scala:35), which has no missing parents
19/03/14 09:26:34 INFO storage.MemoryStore: Block broadcast_2 stored as values in memory (estimated size 4.6 KB, free 16.8 KB)
19/03/14 09:26:34 INFO storage.MemoryStore: Block broadcast_2_piece0 stored as bytes in memory (estimated size 2.3 KB, free 19.1 KB)
19/03/14 09:26:34 INFO storage.BlockManagerInfo: Added broadcast_2_piece0 in memory on localhost:37380 (size: 2.3 KB, free: 522.0 MB)
19/03/14 09:26:34 INFO spark.SparkContext: Created broadcast 2 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Submitting 3 missing tasks from ResultStage 3 (MapPartitionsRDD[3] at map at SingleReadBucket.scala:35)
19/03/14 09:26:34 INFO scheduler.TaskSchedulerImpl: Adding task set 3.0 with 3 tasks
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 3.0 (TID 5, localhost, partition 1,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 3.0 (TID 6, localhost, partition 2,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 3.0 (TID 7, localhost, partition 3,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:34 INFO executor.Executor: Running task 1.0 in stage 3.0 (TID 6)
19/03/14 09:26:34 INFO executor.Executor: Running task 0.0 in stage 3.0 (TID 5)
19/03/14 09:26:34 INFO executor.Executor: Running task 2.0 in stage 3.0 (TID 7)
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 1 ms
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 1 ms
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:34 INFO executor.Executor: Finished task 2.0 in stage 3.0 (TID 7). 1171 bytes result sent to driver
19/03/14 09:26:34 INFO executor.Executor: Finished task 0.0 in stage 3.0 (TID 5). 1171 bytes result sent to driver
19/03/14 09:26:34 INFO executor.Executor: Finished task 1.0 in stage 3.0 (TID 6). 1306 bytes result sent to driver
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 3.0 (TID 7) in 7 ms on localhost (1/3)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 3.0 (TID 5) in 8 ms on localhost (2/3)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 3.0 (TID 6) in 9 ms on localhost (3/3)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: ResultStage 3 (first at ComparisonsSuite.scala:40) finished in 0.010 s
19/03/14 09:26:34 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 3.0, whose tasks have all completed, from pool 
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Job 1 finished: first at ComparisonsSuite.scala:40, took 0.016003 s
19/03/14 09:26:34 INFO spark.SparkContext: Starting job: first at ComparisonsSuite.scala:40
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Registering RDD 5 (groupBy at SingleReadBucket.scala:34)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Got job 2 (first at ComparisonsSuite.scala:40) with 1 output partitions
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Final stage: ResultStage 5 (first at ComparisonsSuite.scala:40)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 4)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Missing parents: List(ShuffleMapStage 4)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 4 (MapPartitionsRDD[5] at groupBy at SingleReadBucket.scala:34), which has no missing parents
19/03/14 09:26:34 INFO storage.MemoryStore: Block broadcast_3 stored as values in memory (estimated size 3.5 KB, free 22.6 KB)
19/03/14 09:26:34 INFO storage.MemoryStore: Block broadcast_3_piece0 stored as bytes in memory (estimated size 1912.0 B, free 24.5 KB)
19/03/14 09:26:34 INFO storage.BlockManagerInfo: Added broadcast_3_piece0 in memory on localhost:37380 (size: 1912.0 B, free: 522.0 MB)
19/03/14 09:26:34 INFO spark.SparkContext: Created broadcast 3 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 4 (MapPartitionsRDD[5] at groupBy at SingleReadBucket.scala:34)
19/03/14 09:26:34 INFO scheduler.TaskSchedulerImpl: Adding task set 4.0 with 4 tasks
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 4.0 (TID 8, localhost, partition 0,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 4.0 (TID 9, localhost, partition 1,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 4.0 (TID 10, localhost, partition 2,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 4.0 (TID 11, localhost, partition 3,PROCESS_LOCAL, 2144 bytes)
19/03/14 09:26:34 INFO executor.Executor: Running task 0.0 in stage 4.0 (TID 8)
19/03/14 09:26:34 INFO executor.Executor: Running task 1.0 in stage 4.0 (TID 9)
19/03/14 09:26:34 INFO executor.Executor: Running task 3.0 in stage 4.0 (TID 11)
19/03/14 09:26:34 INFO executor.Executor: Running task 2.0 in stage 4.0 (TID 10)
19/03/14 09:26:34 INFO executor.Executor: Finished task 2.0 in stage 4.0 (TID 10). 1090 bytes result sent to driver
19/03/14 09:26:34 INFO executor.Executor: Finished task 0.0 in stage 4.0 (TID 8). 1090 bytes result sent to driver
19/03/14 09:26:34 INFO executor.Executor: Finished task 1.0 in stage 4.0 (TID 9). 1090 bytes result sent to driver
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 4.0 (TID 8) in 16 ms on localhost (1/4)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 4.0 (TID 10) in 11 ms on localhost (2/4)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 4.0 (TID 9) in 14 ms on localhost (3/4)
19/03/14 09:26:34 INFO executor.Executor: Finished task 3.0 in stage 4.0 (TID 11). 1090 bytes result sent to driver
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 4.0 (TID 11) in 16 ms on localhost (4/4)
19/03/14 09:26:34 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 4.0, whose tasks have all completed, from pool 
19/03/14 09:26:34 INFO scheduler.DAGScheduler: ShuffleMapStage 4 (groupBy at SingleReadBucket.scala:34) finished in 0.027 s
19/03/14 09:26:34 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:34 INFO scheduler.DAGScheduler: running: Set()
19/03/14 09:26:34 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 5)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Submitting ResultStage 5 (MapPartitionsRDD[7] at map at SingleReadBucket.scala:35), which has no missing parents
19/03/14 09:26:34 INFO storage.MemoryStore: Block broadcast_4 stored as values in memory (estimated size 4.6 KB, free 29.0 KB)
19/03/14 09:26:34 INFO storage.MemoryStore: Block broadcast_4_piece0 stored as bytes in memory (estimated size 2.3 KB, free 31.4 KB)
19/03/14 09:26:34 INFO storage.BlockManagerInfo: Added broadcast_4_piece0 in memory on localhost:37380 (size: 2.3 KB, free: 522.0 MB)
19/03/14 09:26:34 INFO spark.SparkContext: Created broadcast 4 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Submitting 1 missing tasks from ResultStage 5 (MapPartitionsRDD[7] at map at SingleReadBucket.scala:35)
19/03/14 09:26:34 INFO scheduler.TaskSchedulerImpl: Adding task set 5.0 with 1 tasks
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 5.0 (TID 12, localhost, partition 0,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:34 INFO executor.Executor: Running task 0.0 in stage 5.0 (TID 12)
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 1 ms
19/03/14 09:26:34 INFO executor.Executor: Finished task 0.0 in stage 5.0 (TID 12). 1171 bytes result sent to driver
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 5.0 (TID 12) in 10 ms on localhost (1/1)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: ResultStage 5 (first at ComparisonsSuite.scala:40) finished in 0.010 s
19/03/14 09:26:34 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 5.0, whose tasks have all completed, from pool 
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Job 2 finished: first at ComparisonsSuite.scala:40, took 0.048125 s
19/03/14 09:26:34 INFO spark.SparkContext: Starting job: first at ComparisonsSuite.scala:40
19/03/14 09:26:34 INFO spark.MapOutputTrackerMaster: Size of output statuses for shuffle 1 is 158 bytes
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Got job 3 (first at ComparisonsSuite.scala:40) with 3 output partitions
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Final stage: ResultStage 7 (first at ComparisonsSuite.scala:40)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 6)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Missing parents: List()
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Submitting ResultStage 7 (MapPartitionsRDD[7] at map at SingleReadBucket.scala:35), which has no missing parents
19/03/14 09:26:34 INFO storage.MemoryStore: Block broadcast_5 stored as values in memory (estimated size 4.6 KB, free 35.9 KB)
19/03/14 09:26:34 INFO storage.MemoryStore: Block broadcast_5_piece0 stored as bytes in memory (estimated size 2.3 KB, free 38.2 KB)
19/03/14 09:26:34 INFO storage.BlockManagerInfo: Added broadcast_5_piece0 in memory on localhost:37380 (size: 2.3 KB, free: 522.0 MB)
19/03/14 09:26:34 INFO spark.SparkContext: Created broadcast 5 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Submitting 3 missing tasks from ResultStage 7 (MapPartitionsRDD[7] at map at SingleReadBucket.scala:35)
19/03/14 09:26:34 INFO scheduler.TaskSchedulerImpl: Adding task set 7.0 with 3 tasks
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 7.0 (TID 13, localhost, partition 1,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 7.0 (TID 14, localhost, partition 2,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 7.0 (TID 15, localhost, partition 3,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:34 INFO executor.Executor: Running task 0.0 in stage 7.0 (TID 13)
19/03/14 09:26:34 INFO executor.Executor: Running task 1.0 in stage 7.0 (TID 14)
19/03/14 09:26:34 INFO executor.Executor: Running task 2.0 in stage 7.0 (TID 15)
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:34 INFO executor.Executor: Finished task 0.0 in stage 7.0 (TID 13). 1171 bytes result sent to driver
19/03/14 09:26:34 INFO executor.Executor: Finished task 2.0 in stage 7.0 (TID 15). 1171 bytes result sent to driver
19/03/14 09:26:34 INFO executor.Executor: Finished task 1.0 in stage 7.0 (TID 14). 1306 bytes result sent to driver
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 7.0 (TID 13) in 9 ms on localhost (1/3)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 7.0 (TID 15) in 8 ms on localhost (2/3)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 7.0 (TID 14) in 8 ms on localhost (3/3)
19/03/14 09:26:34 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 7.0, whose tasks have all completed, from pool 
19/03/14 09:26:34 INFO scheduler.DAGScheduler: ResultStage 7 (first at ComparisonsSuite.scala:40) finished in 0.009 s
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Job 3 finished: first at ComparisonsSuite.scala:40, took 0.015582 s
19/03/14 09:26:34 INFO spark.SparkContext: Starting job: first at ComparisonsSuite.scala:40
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Registering RDD 9 (groupBy at SingleReadBucket.scala:34)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Got job 4 (first at ComparisonsSuite.scala:40) with 1 output partitions
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Final stage: ResultStage 9 (first at ComparisonsSuite.scala:40)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 8)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Missing parents: List(ShuffleMapStage 8)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 8 (MapPartitionsRDD[9] at groupBy at SingleReadBucket.scala:34), which has no missing parents
19/03/14 09:26:34 INFO storage.MemoryStore: Block broadcast_6 stored as values in memory (estimated size 3.5 KB, free 41.7 KB)
19/03/14 09:26:34 INFO storage.MemoryStore: Block broadcast_6_piece0 stored as bytes in memory (estimated size 1915.0 B, free 43.6 KB)
19/03/14 09:26:34 INFO storage.BlockManagerInfo: Added broadcast_6_piece0 in memory on localhost:37380 (size: 1915.0 B, free: 522.0 MB)
19/03/14 09:26:34 INFO spark.SparkContext: Created broadcast 6 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 8 (MapPartitionsRDD[9] at groupBy at SingleReadBucket.scala:34)
19/03/14 09:26:34 INFO scheduler.TaskSchedulerImpl: Adding task set 8.0 with 4 tasks
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 8.0 (TID 16, localhost, partition 0,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 8.0 (TID 17, localhost, partition 1,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 8.0 (TID 18, localhost, partition 2,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 8.0 (TID 19, localhost, partition 3,PROCESS_LOCAL, 2144 bytes)
19/03/14 09:26:34 INFO executor.Executor: Running task 0.0 in stage 8.0 (TID 16)
19/03/14 09:26:34 INFO executor.Executor: Running task 1.0 in stage 8.0 (TID 17)
19/03/14 09:26:34 INFO executor.Executor: Running task 3.0 in stage 8.0 (TID 19)
19/03/14 09:26:34 INFO executor.Executor: Running task 2.0 in stage 8.0 (TID 18)
19/03/14 09:26:34 INFO executor.Executor: Finished task 1.0 in stage 8.0 (TID 17). 1090 bytes result sent to driver
19/03/14 09:26:34 INFO executor.Executor: Finished task 0.0 in stage 8.0 (TID 16). 1090 bytes result sent to driver
19/03/14 09:26:34 INFO executor.Executor: Finished task 2.0 in stage 8.0 (TID 18). 1090 bytes result sent to driver
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 8.0 (TID 17) in 9 ms on localhost (1/4)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 8.0 (TID 16) in 12 ms on localhost (2/4)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 8.0 (TID 18) in 9 ms on localhost (3/4)
19/03/14 09:26:34 INFO executor.Executor: Finished task 3.0 in stage 8.0 (TID 19). 1090 bytes result sent to driver
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 8.0 (TID 19) in 16 ms on localhost (4/4)
19/03/14 09:26:34 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 8.0, whose tasks have all completed, from pool 
19/03/14 09:26:34 INFO scheduler.DAGScheduler: ShuffleMapStage 8 (groupBy at SingleReadBucket.scala:34) finished in 0.022 s
19/03/14 09:26:34 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:34 INFO scheduler.DAGScheduler: running: Set()
19/03/14 09:26:34 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 9)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Submitting ResultStage 9 (MapPartitionsRDD[11] at map at SingleReadBucket.scala:35), which has no missing parents
19/03/14 09:26:34 INFO storage.MemoryStore: Block broadcast_7 stored as values in memory (estimated size 4.6 KB, free 48.2 KB)
19/03/14 09:26:34 INFO storage.MemoryStore: Block broadcast_7_piece0 stored as bytes in memory (estimated size 2.3 KB, free 50.5 KB)
19/03/14 09:26:34 INFO storage.BlockManagerInfo: Added broadcast_7_piece0 in memory on localhost:37380 (size: 2.3 KB, free: 522.0 MB)
19/03/14 09:26:34 INFO spark.SparkContext: Created broadcast 7 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Submitting 1 missing tasks from ResultStage 9 (MapPartitionsRDD[11] at map at SingleReadBucket.scala:35)
19/03/14 09:26:34 INFO scheduler.TaskSchedulerImpl: Adding task set 9.0 with 1 tasks
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 9.0 (TID 20, localhost, partition 0,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:34 INFO executor.Executor: Running task 0.0 in stage 9.0 (TID 20)
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:34 INFO executor.Executor: Finished task 0.0 in stage 9.0 (TID 20). 1171 bytes result sent to driver
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 9.0 (TID 20) in 6 ms on localhost (1/1)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: ResultStage 9 (first at ComparisonsSuite.scala:40) finished in 0.006 s
19/03/14 09:26:34 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 9.0, whose tasks have all completed, from pool 
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Job 4 finished: first at ComparisonsSuite.scala:40, took 0.039187 s
19/03/14 09:26:34 INFO spark.SparkContext: Starting job: first at ComparisonsSuite.scala:40
19/03/14 09:26:34 INFO spark.MapOutputTrackerMaster: Size of output statuses for shuffle 2 is 158 bytes
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Got job 5 (first at ComparisonsSuite.scala:40) with 3 output partitions
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Final stage: ResultStage 11 (first at ComparisonsSuite.scala:40)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 10)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Missing parents: List()
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Submitting ResultStage 11 (MapPartitionsRDD[11] at map at SingleReadBucket.scala:35), which has no missing parents
19/03/14 09:26:34 INFO storage.MemoryStore: Block broadcast_8 stored as values in memory (estimated size 4.6 KB, free 55.0 KB)
19/03/14 09:26:34 INFO storage.MemoryStore: Block broadcast_8_piece0 stored as bytes in memory (estimated size 2.3 KB, free 57.4 KB)
19/03/14 09:26:34 INFO storage.BlockManagerInfo: Added broadcast_8_piece0 in memory on localhost:37380 (size: 2.3 KB, free: 522.0 MB)
19/03/14 09:26:34 INFO spark.SparkContext: Created broadcast 8 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Submitting 3 missing tasks from ResultStage 11 (MapPartitionsRDD[11] at map at SingleReadBucket.scala:35)
19/03/14 09:26:34 INFO scheduler.TaskSchedulerImpl: Adding task set 11.0 with 3 tasks
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 11.0 (TID 21, localhost, partition 1,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 11.0 (TID 22, localhost, partition 2,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 11.0 (TID 23, localhost, partition 3,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:34 INFO executor.Executor: Running task 1.0 in stage 11.0 (TID 22)
19/03/14 09:26:34 INFO executor.Executor: Running task 2.0 in stage 11.0 (TID 23)
19/03/14 09:26:34 INFO executor.Executor: Running task 0.0 in stage 11.0 (TID 21)
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 1 ms
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:34 INFO executor.Executor: Finished task 0.0 in stage 11.0 (TID 21). 1171 bytes result sent to driver
19/03/14 09:26:34 INFO executor.Executor: Finished task 2.0 in stage 11.0 (TID 23). 1171 bytes result sent to driver
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 11.0 (TID 21) in 8 ms on localhost (1/3)
19/03/14 09:26:34 INFO executor.Executor: Finished task 1.0 in stage 11.0 (TID 22). 1306 bytes result sent to driver
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 11.0 (TID 23) in 8 ms on localhost (2/3)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 11.0 (TID 22) in 9 ms on localhost (3/3)
19/03/14 09:26:34 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 11.0, whose tasks have all completed, from pool 
19/03/14 09:26:34 INFO scheduler.DAGScheduler: ResultStage 11 (first at ComparisonsSuite.scala:40) finished in 0.010 s
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Job 5 finished: first at ComparisonsSuite.scala:40, took 0.016237 s
19/03/14 09:26:34 INFO spark.SparkContext: Starting job: first at ComparisonsSuite.scala:40
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Registering RDD 13 (groupBy at SingleReadBucket.scala:34)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Got job 6 (first at ComparisonsSuite.scala:40) with 1 output partitions
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Final stage: ResultStage 13 (first at ComparisonsSuite.scala:40)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 12)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Missing parents: List(ShuffleMapStage 12)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 12 (MapPartitionsRDD[13] at groupBy at SingleReadBucket.scala:34), which has no missing parents
19/03/14 09:26:34 INFO storage.MemoryStore: Block broadcast_9 stored as values in memory (estimated size 3.5 KB, free 60.9 KB)
19/03/14 09:26:34 INFO storage.MemoryStore: Block broadcast_9_piece0 stored as bytes in memory (estimated size 1914.0 B, free 62.7 KB)
19/03/14 09:26:34 INFO storage.BlockManagerInfo: Added broadcast_9_piece0 in memory on localhost:37380 (size: 1914.0 B, free: 522.0 MB)
19/03/14 09:26:34 INFO spark.SparkContext: Created broadcast 9 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 12 (MapPartitionsRDD[13] at groupBy at SingleReadBucket.scala:34)
19/03/14 09:26:34 INFO scheduler.TaskSchedulerImpl: Adding task set 12.0 with 4 tasks
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 12.0 (TID 24, localhost, partition 0,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 12.0 (TID 25, localhost, partition 1,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 12.0 (TID 26, localhost, partition 2,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 12.0 (TID 27, localhost, partition 3,PROCESS_LOCAL, 2144 bytes)
19/03/14 09:26:34 INFO executor.Executor: Running task 0.0 in stage 12.0 (TID 24)
19/03/14 09:26:34 INFO executor.Executor: Running task 3.0 in stage 12.0 (TID 27)
19/03/14 09:26:34 INFO executor.Executor: Running task 1.0 in stage 12.0 (TID 25)
19/03/14 09:26:34 INFO executor.Executor: Running task 2.0 in stage 12.0 (TID 26)
19/03/14 09:26:34 INFO executor.Executor: Finished task 1.0 in stage 12.0 (TID 25). 1090 bytes result sent to driver
19/03/14 09:26:34 INFO executor.Executor: Finished task 2.0 in stage 12.0 (TID 26). 1090 bytes result sent to driver
19/03/14 09:26:34 INFO executor.Executor: Finished task 0.0 in stage 12.0 (TID 24). 1090 bytes result sent to driver
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 12.0 (TID 26) in 8 ms on localhost (1/4)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 12.0 (TID 24) in 11 ms on localhost (2/4)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 12.0 (TID 25) in 9 ms on localhost (3/4)
19/03/14 09:26:34 INFO executor.Executor: Finished task 3.0 in stage 12.0 (TID 27). 1090 bytes result sent to driver
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 12.0 (TID 27) in 12 ms on localhost (4/4)
19/03/14 09:26:34 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 12.0, whose tasks have all completed, from pool 
19/03/14 09:26:34 INFO scheduler.DAGScheduler: ShuffleMapStage 12 (groupBy at SingleReadBucket.scala:34) finished in 0.016 s
19/03/14 09:26:34 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:34 INFO scheduler.DAGScheduler: running: Set()
19/03/14 09:26:34 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 13)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Submitting ResultStage 13 (MapPartitionsRDD[15] at map at SingleReadBucket.scala:35), which has no missing parents
19/03/14 09:26:34 INFO storage.MemoryStore: Block broadcast_10 stored as values in memory (estimated size 4.6 KB, free 67.3 KB)
19/03/14 09:26:34 INFO storage.MemoryStore: Block broadcast_10_piece0 stored as bytes in memory (estimated size 2.3 KB, free 69.6 KB)
19/03/14 09:26:34 INFO storage.BlockManagerInfo: Added broadcast_10_piece0 in memory on localhost:37380 (size: 2.3 KB, free: 522.0 MB)
19/03/14 09:26:34 INFO spark.SparkContext: Created broadcast 10 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Submitting 1 missing tasks from ResultStage 13 (MapPartitionsRDD[15] at map at SingleReadBucket.scala:35)
19/03/14 09:26:34 INFO scheduler.TaskSchedulerImpl: Adding task set 13.0 with 1 tasks
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 13.0 (TID 28, localhost, partition 0,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:34 INFO executor.Executor: Running task 0.0 in stage 13.0 (TID 28)
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:34 INFO executor.Executor: Finished task 0.0 in stage 13.0 (TID 28). 1171 bytes result sent to driver
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 13.0 (TID 28) in 6 ms on localhost (1/1)
19/03/14 09:26:34 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 13.0, whose tasks have all completed, from pool 
19/03/14 09:26:34 INFO scheduler.DAGScheduler: ResultStage 13 (first at ComparisonsSuite.scala:40) finished in 0.007 s
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Job 6 finished: first at ComparisonsSuite.scala:40, took 0.033351 s
19/03/14 09:26:34 INFO spark.SparkContext: Starting job: first at ComparisonsSuite.scala:40
19/03/14 09:26:34 INFO spark.MapOutputTrackerMaster: Size of output statuses for shuffle 3 is 158 bytes
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Got job 7 (first at ComparisonsSuite.scala:40) with 3 output partitions
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Final stage: ResultStage 15 (first at ComparisonsSuite.scala:40)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 14)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Missing parents: List()
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Submitting ResultStage 15 (MapPartitionsRDD[15] at map at SingleReadBucket.scala:35), which has no missing parents
19/03/14 09:26:34 INFO storage.MemoryStore: Block broadcast_11 stored as values in memory (estimated size 4.6 KB, free 74.2 KB)
19/03/14 09:26:34 INFO storage.MemoryStore: Block broadcast_11_piece0 stored as bytes in memory (estimated size 2.3 KB, free 76.5 KB)
19/03/14 09:26:34 INFO storage.BlockManagerInfo: Added broadcast_11_piece0 in memory on localhost:37380 (size: 2.3 KB, free: 522.0 MB)
19/03/14 09:26:34 INFO spark.SparkContext: Created broadcast 11 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Submitting 3 missing tasks from ResultStage 15 (MapPartitionsRDD[15] at map at SingleReadBucket.scala:35)
19/03/14 09:26:34 INFO scheduler.TaskSchedulerImpl: Adding task set 15.0 with 3 tasks
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 15.0 (TID 29, localhost, partition 1,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 15.0 (TID 30, localhost, partition 2,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 15.0 (TID 31, localhost, partition 3,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:34 INFO executor.Executor: Running task 1.0 in stage 15.0 (TID 30)
19/03/14 09:26:34 INFO executor.Executor: Running task 0.0 in stage 15.0 (TID 29)
19/03/14 09:26:34 INFO executor.Executor: Running task 2.0 in stage 15.0 (TID 31)
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:34 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 1 ms
19/03/14 09:26:34 INFO executor.Executor: Finished task 0.0 in stage 15.0 (TID 29). 1171 bytes result sent to driver
19/03/14 09:26:34 INFO executor.Executor: Finished task 2.0 in stage 15.0 (TID 31). 1171 bytes result sent to driver
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 15.0 (TID 31) in 7 ms on localhost (1/3)
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 15.0 (TID 29) in 7 ms on localhost (2/3)
19/03/14 09:26:34 INFO executor.Executor: Finished task 1.0 in stage 15.0 (TID 30). 1306 bytes result sent to driver
19/03/14 09:26:34 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 15.0 (TID 30) in 11 ms on localhost (3/3)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: ResultStage 15 (first at ComparisonsSuite.scala:40) finished in 0.012 s
19/03/14 09:26:34 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 15.0, whose tasks have all completed, from pool 
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Job 7 finished: first at ComparisonsSuite.scala:40, took 0.017571 s
19/03/14 09:26:34 INFO spark.SparkContext: Starting job: first at ComparisonsSuite.scala:40
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Registering RDD 17 (groupBy at SingleReadBucket.scala:34)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Got job 8 (first at ComparisonsSuite.scala:40) with 1 output partitions
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Final stage: ResultStage 17 (first at ComparisonsSuite.scala:40)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 16)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Missing parents: List(ShuffleMapStage 16)
19/03/14 09:26:34 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 16 (MapPartitionsRDD[17] at groupBy at SingleReadBucket.scala:34), which has no missing parents
19/03/14 09:26:34 INFO storage.MemoryStore: Block broadcast_12 stored as values in memory (estimated size 3.5 KB, free 80.0 KB)
19/03/14 09:26:35 INFO storage.MemoryStore: Block broadcast_12_piece0 stored as bytes in memory (estimated size 1913.0 B, free 81.9 KB)
19/03/14 09:26:35 INFO storage.BlockManagerInfo: Added broadcast_12_piece0 in memory on localhost:37380 (size: 1913.0 B, free: 522.0 MB)
19/03/14 09:26:35 INFO spark.SparkContext: Created broadcast 12 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 16 (MapPartitionsRDD[17] at groupBy at SingleReadBucket.scala:34)
19/03/14 09:26:35 INFO scheduler.TaskSchedulerImpl: Adding task set 16.0 with 4 tasks
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 16.0 (TID 32, localhost, partition 0,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 16.0 (TID 33, localhost, partition 1,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 16.0 (TID 34, localhost, partition 2,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 16.0 (TID 35, localhost, partition 3,PROCESS_LOCAL, 2144 bytes)
19/03/14 09:26:35 INFO executor.Executor: Running task 0.0 in stage 16.0 (TID 32)
19/03/14 09:26:35 INFO executor.Executor: Running task 3.0 in stage 16.0 (TID 35)
19/03/14 09:26:35 INFO executor.Executor: Running task 2.0 in stage 16.0 (TID 34)
19/03/14 09:26:35 INFO executor.Executor: Running task 1.0 in stage 16.0 (TID 33)
19/03/14 09:26:35 INFO executor.Executor: Finished task 1.0 in stage 16.0 (TID 33). 1090 bytes result sent to driver
19/03/14 09:26:35 INFO executor.Executor: Finished task 2.0 in stage 16.0 (TID 34). 1090 bytes result sent to driver
19/03/14 09:26:35 INFO executor.Executor: Finished task 0.0 in stage 16.0 (TID 32). 1090 bytes result sent to driver
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 16.0 (TID 33) in 8 ms on localhost (1/4)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 16.0 (TID 34) in 8 ms on localhost (2/4)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 16.0 (TID 32) in 12 ms on localhost (3/4)
19/03/14 09:26:35 INFO executor.Executor: Finished task 3.0 in stage 16.0 (TID 35). 1090 bytes result sent to driver
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 16.0 (TID 35) in 12 ms on localhost (4/4)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: ShuffleMapStage 16 (groupBy at SingleReadBucket.scala:34) finished in 0.016 s
19/03/14 09:26:35 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:35 INFO scheduler.DAGScheduler: running: Set()
19/03/14 09:26:35 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 17)
19/03/14 09:26:35 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 16.0, whose tasks have all completed, from pool 
19/03/14 09:26:35 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Submitting ResultStage 17 (MapPartitionsRDD[19] at map at SingleReadBucket.scala:35), which has no missing parents
19/03/14 09:26:35 INFO storage.MemoryStore: Block broadcast_13 stored as values in memory (estimated size 4.6 KB, free 86.4 KB)
19/03/14 09:26:35 INFO storage.MemoryStore: Block broadcast_13_piece0 stored as bytes in memory (estimated size 2.3 KB, free 88.7 KB)
19/03/14 09:26:35 INFO storage.BlockManagerInfo: Added broadcast_13_piece0 in memory on localhost:37380 (size: 2.3 KB, free: 522.0 MB)
19/03/14 09:26:35 INFO spark.SparkContext: Created broadcast 13 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Submitting 1 missing tasks from ResultStage 17 (MapPartitionsRDD[19] at map at SingleReadBucket.scala:35)
19/03/14 09:26:35 INFO scheduler.TaskSchedulerImpl: Adding task set 17.0 with 1 tasks
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 17.0 (TID 36, localhost, partition 0,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:35 INFO executor.Executor: Running task 0.0 in stage 17.0 (TID 36)
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:35 INFO executor.Executor: Finished task 0.0 in stage 17.0 (TID 36). 1171 bytes result sent to driver
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 17.0 (TID 36) in 7 ms on localhost (1/1)
19/03/14 09:26:35 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 17.0, whose tasks have all completed, from pool 
19/03/14 09:26:35 INFO scheduler.DAGScheduler: ResultStage 17 (first at ComparisonsSuite.scala:40) finished in 0.007 s
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Job 8 finished: first at ComparisonsSuite.scala:40, took 0.034753 s
19/03/14 09:26:35 INFO spark.SparkContext: Starting job: first at ComparisonsSuite.scala:40
19/03/14 09:26:35 INFO spark.MapOutputTrackerMaster: Size of output statuses for shuffle 4 is 158 bytes
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Got job 9 (first at ComparisonsSuite.scala:40) with 3 output partitions
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Final stage: ResultStage 19 (first at ComparisonsSuite.scala:40)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 18)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Missing parents: List()
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Submitting ResultStage 19 (MapPartitionsRDD[19] at map at SingleReadBucket.scala:35), which has no missing parents
19/03/14 09:26:35 INFO storage.MemoryStore: Block broadcast_14 stored as values in memory (estimated size 4.6 KB, free 93.3 KB)
19/03/14 09:26:35 INFO storage.MemoryStore: Block broadcast_14_piece0 stored as bytes in memory (estimated size 2.3 KB, free 95.6 KB)
19/03/14 09:26:35 INFO storage.BlockManagerInfo: Added broadcast_14_piece0 in memory on localhost:37380 (size: 2.3 KB, free: 522.0 MB)
19/03/14 09:26:35 INFO spark.SparkContext: Created broadcast 14 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Submitting 3 missing tasks from ResultStage 19 (MapPartitionsRDD[19] at map at SingleReadBucket.scala:35)
19/03/14 09:26:35 INFO scheduler.TaskSchedulerImpl: Adding task set 19.0 with 3 tasks
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 19.0 (TID 37, localhost, partition 1,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 19.0 (TID 38, localhost, partition 2,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 19.0 (TID 39, localhost, partition 3,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:35 INFO executor.Executor: Running task 0.0 in stage 19.0 (TID 37)
19/03/14 09:26:35 INFO executor.Executor: Running task 1.0 in stage 19.0 (TID 38)
19/03/14 09:26:35 INFO executor.Executor: Running task 2.0 in stage 19.0 (TID 39)
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 1 ms
19/03/14 09:26:35 INFO executor.Executor: Finished task 0.0 in stage 19.0 (TID 37). 1171 bytes result sent to driver
19/03/14 09:26:35 INFO executor.Executor: Finished task 2.0 in stage 19.0 (TID 39). 1171 bytes result sent to driver
19/03/14 09:26:35 INFO executor.Executor: Finished task 1.0 in stage 19.0 (TID 38). 1306 bytes result sent to driver
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 19.0 (TID 37) in 8 ms on localhost (1/3)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 19.0 (TID 38) in 7 ms on localhost (2/3)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 19.0 (TID 39) in 8 ms on localhost (3/3)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: ResultStage 19 (first at ComparisonsSuite.scala:40) finished in 0.009 s
19/03/14 09:26:35 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 19.0, whose tasks have all completed, from pool 
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Job 9 finished: first at ComparisonsSuite.scala:40, took 0.014993 s
19/03/14 09:26:35 INFO spark.SparkContext: Starting job: first at ComparisonsSuite.scala:40
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Registering RDD 21 (groupBy at SingleReadBucket.scala:34)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Got job 10 (first at ComparisonsSuite.scala:40) with 1 output partitions
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Final stage: ResultStage 21 (first at ComparisonsSuite.scala:40)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 20)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Missing parents: List(ShuffleMapStage 20)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 20 (MapPartitionsRDD[21] at groupBy at SingleReadBucket.scala:34), which has no missing parents
19/03/14 09:26:35 INFO storage.MemoryStore: Block broadcast_15 stored as values in memory (estimated size 3.5 KB, free 99.1 KB)
19/03/14 09:26:35 INFO storage.MemoryStore: Block broadcast_15_piece0 stored as bytes in memory (estimated size 1914.0 B, free 101.0 KB)
19/03/14 09:26:35 INFO spark.ContextCleaner: Cleaned shuffle 0
19/03/14 09:26:35 INFO storage.BlockManagerInfo: Added broadcast_15_piece0 in memory on localhost:37380 (size: 1914.0 B, free: 522.0 MB)
19/03/14 09:26:35 INFO spark.SparkContext: Created broadcast 15 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 20 (MapPartitionsRDD[21] at groupBy at SingleReadBucket.scala:34)
19/03/14 09:26:35 INFO scheduler.TaskSchedulerImpl: Adding task set 20.0 with 4 tasks
19/03/14 09:26:35 INFO storage.BlockManagerInfo: Removed broadcast_3_piece0 on localhost:37380 in memory (size: 1912.0 B, free: 522.0 MB)
19/03/14 09:26:35 INFO spark.ContextCleaner: Cleaned accumulator 112
19/03/14 09:26:35 INFO spark.ContextCleaner: Cleaned shuffle 1
19/03/14 09:26:35 INFO storage.BlockManagerInfo: Removed broadcast_2_piece0 on localhost:37380 in memory (size: 2.3 KB, free: 522.0 MB)
19/03/14 09:26:35 INFO spark.ContextCleaner: Cleaned accumulator 111
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 20.0 (TID 40, localhost, partition 0,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:35 INFO storage.BlockManagerInfo: Removed broadcast_1_piece0 on localhost:37380 in memory (size: 2.3 KB, free: 522.0 MB)
19/03/14 09:26:35 INFO spark.ContextCleaner: Cleaned accumulator 110
19/03/14 09:26:35 INFO storage.BlockManagerInfo: Removed broadcast_0_piece0 on localhost:37380 in memory (size: 1915.0 B, free: 522.0 MB)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 20.0 (TID 41, localhost, partition 1,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:35 INFO spark.ContextCleaner: Cleaned accumulator 109
19/03/14 09:26:35 INFO storage.BlockManagerInfo: Removed broadcast_14_piece0 on localhost:37380 in memory (size: 2.3 KB, free: 522.0 MB)
19/03/14 09:26:35 INFO spark.ContextCleaner: Cleaned accumulator 123
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 20.0 (TID 42, localhost, partition 2,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:35 INFO storage.BlockManagerInfo: Removed broadcast_13_piece0 on localhost:37380 in memory (size: 2.3 KB, free: 522.0 MB)
19/03/14 09:26:35 INFO spark.ContextCleaner: Cleaned accumulator 122
19/03/14 09:26:35 INFO storage.BlockManagerInfo: Removed broadcast_12_piece0 on localhost:37380 in memory (size: 1913.0 B, free: 522.0 MB)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 20.0 (TID 43, localhost, partition 3,PROCESS_LOCAL, 2144 bytes)
19/03/14 09:26:35 INFO spark.ContextCleaner: Cleaned accumulator 121
19/03/14 09:26:35 INFO executor.Executor: Running task 0.0 in stage 20.0 (TID 40)
19/03/14 09:26:35 INFO executor.Executor: Running task 1.0 in stage 20.0 (TID 41)
19/03/14 09:26:35 INFO executor.Executor: Running task 3.0 in stage 20.0 (TID 43)
19/03/14 09:26:35 INFO spark.ContextCleaner: Cleaned shuffle 4
19/03/14 09:26:35 INFO executor.Executor: Running task 2.0 in stage 20.0 (TID 42)
19/03/14 09:26:35 INFO storage.BlockManagerInfo: Removed broadcast_11_piece0 on localhost:37380 in memory (size: 2.3 KB, free: 522.0 MB)
19/03/14 09:26:35 INFO spark.ContextCleaner: Cleaned accumulator 120
19/03/14 09:26:35 INFO storage.BlockManagerInfo: Removed broadcast_10_piece0 on localhost:37380 in memory (size: 2.3 KB, free: 522.0 MB)
19/03/14 09:26:35 INFO spark.ContextCleaner: Cleaned accumulator 119
19/03/14 09:26:35 INFO storage.BlockManagerInfo: Removed broadcast_9_piece0 on localhost:37380 in memory (size: 1914.0 B, free: 522.0 MB)
19/03/14 09:26:35 INFO spark.ContextCleaner: Cleaned accumulator 118
19/03/14 09:26:35 INFO spark.ContextCleaner: Cleaned shuffle 3
19/03/14 09:26:35 INFO executor.Executor: Finished task 0.0 in stage 20.0 (TID 40). 1090 bytes result sent to driver
19/03/14 09:26:35 INFO storage.BlockManagerInfo: Removed broadcast_8_piece0 on localhost:37380 in memory (size: 2.3 KB, free: 522.0 MB)
19/03/14 09:26:35 INFO executor.Executor: Finished task 2.0 in stage 20.0 (TID 42). 1090 bytes result sent to driver
19/03/14 09:26:35 INFO executor.Executor: Finished task 1.0 in stage 20.0 (TID 41). 1090 bytes result sent to driver
19/03/14 09:26:35 INFO spark.ContextCleaner: Cleaned accumulator 117
19/03/14 09:26:35 INFO storage.BlockManagerInfo: Removed broadcast_7_piece0 on localhost:37380 in memory (size: 2.3 KB, free: 522.0 MB)
19/03/14 09:26:35 INFO spark.ContextCleaner: Cleaned accumulator 116
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 20.0 (TID 40) in 11 ms on localhost (1/4)
19/03/14 09:26:35 INFO storage.BlockManagerInfo: Removed broadcast_6_piece0 on localhost:37380 in memory (size: 1915.0 B, free: 522.0 MB)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 20.0 (TID 42) in 8 ms on localhost (2/4)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 20.0 (TID 41) in 10 ms on localhost (3/4)
19/03/14 09:26:35 INFO spark.ContextCleaner: Cleaned accumulator 115
19/03/14 09:26:35 INFO spark.ContextCleaner: Cleaned shuffle 2
19/03/14 09:26:35 INFO storage.BlockManagerInfo: Removed broadcast_5_piece0 on localhost:37380 in memory (size: 2.3 KB, free: 522.0 MB)
19/03/14 09:26:35 INFO spark.ContextCleaner: Cleaned accumulator 114
19/03/14 09:26:35 INFO storage.BlockManagerInfo: Removed broadcast_4_piece0 on localhost:37380 in memory (size: 2.3 KB, free: 522.0 MB)
19/03/14 09:26:35 INFO spark.ContextCleaner: Cleaned accumulator 113
19/03/14 09:26:35 INFO executor.Executor: Finished task 3.0 in stage 20.0 (TID 43). 1090 bytes result sent to driver
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 20.0 (TID 43) in 12 ms on localhost (4/4)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: ShuffleMapStage 20 (groupBy at SingleReadBucket.scala:34) finished in 0.017 s
19/03/14 09:26:35 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:35 INFO scheduler.DAGScheduler: running: Set()
19/03/14 09:26:35 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 20.0, whose tasks have all completed, from pool 
19/03/14 09:26:35 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 21)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Submitting ResultStage 21 (MapPartitionsRDD[23] at map at SingleReadBucket.scala:35), which has no missing parents
19/03/14 09:26:35 INFO storage.MemoryStore: Block broadcast_16 stored as values in memory (estimated size 4.6 KB, free 9.9 KB)
19/03/14 09:26:35 INFO storage.MemoryStore: Block broadcast_16_piece0 stored as bytes in memory (estimated size 2.3 KB, free 12.2 KB)
19/03/14 09:26:35 INFO storage.BlockManagerInfo: Added broadcast_16_piece0 in memory on localhost:37380 (size: 2.3 KB, free: 522.0 MB)
19/03/14 09:26:35 INFO spark.SparkContext: Created broadcast 16 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Submitting 1 missing tasks from ResultStage 21 (MapPartitionsRDD[23] at map at SingleReadBucket.scala:35)
19/03/14 09:26:35 INFO scheduler.TaskSchedulerImpl: Adding task set 21.0 with 1 tasks
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 21.0 (TID 44, localhost, partition 0,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:35 INFO executor.Executor: Running task 0.0 in stage 21.0 (TID 44)
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:35 INFO executor.Executor: Finished task 0.0 in stage 21.0 (TID 44). 1171 bytes result sent to driver
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 21.0 (TID 44) in 7 ms on localhost (1/1)
19/03/14 09:26:35 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 21.0, whose tasks have all completed, from pool 
19/03/14 09:26:35 INFO scheduler.DAGScheduler: ResultStage 21 (first at ComparisonsSuite.scala:40) finished in 0.007 s
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Job 10 finished: first at ComparisonsSuite.scala:40, took 0.045074 s
19/03/14 09:26:35 INFO spark.SparkContext: Starting job: first at ComparisonsSuite.scala:40
19/03/14 09:26:35 INFO spark.MapOutputTrackerMaster: Size of output statuses for shuffle 5 is 158 bytes
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Got job 11 (first at ComparisonsSuite.scala:40) with 3 output partitions
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Final stage: ResultStage 23 (first at ComparisonsSuite.scala:40)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 22)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Missing parents: List()
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Submitting ResultStage 23 (MapPartitionsRDD[23] at map at SingleReadBucket.scala:35), which has no missing parents
19/03/14 09:26:35 INFO storage.MemoryStore: Block broadcast_17 stored as values in memory (estimated size 4.6 KB, free 16.8 KB)
19/03/14 09:26:35 INFO storage.MemoryStore: Block broadcast_17_piece0 stored as bytes in memory (estimated size 2.3 KB, free 19.1 KB)
19/03/14 09:26:35 INFO storage.BlockManagerInfo: Added broadcast_17_piece0 in memory on localhost:37380 (size: 2.3 KB, free: 522.0 MB)
19/03/14 09:26:35 INFO spark.SparkContext: Created broadcast 17 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Submitting 3 missing tasks from ResultStage 23 (MapPartitionsRDD[23] at map at SingleReadBucket.scala:35)
19/03/14 09:26:35 INFO scheduler.TaskSchedulerImpl: Adding task set 23.0 with 3 tasks
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 23.0 (TID 45, localhost, partition 1,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 23.0 (TID 46, localhost, partition 2,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 23.0 (TID 47, localhost, partition 3,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:35 INFO executor.Executor: Running task 2.0 in stage 23.0 (TID 47)
19/03/14 09:26:35 INFO executor.Executor: Running task 0.0 in stage 23.0 (TID 45)
19/03/14 09:26:35 INFO executor.Executor: Running task 1.0 in stage 23.0 (TID 46)
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:35 INFO executor.Executor: Finished task 2.0 in stage 23.0 (TID 47). 1171 bytes result sent to driver
19/03/14 09:26:35 INFO executor.Executor: Finished task 0.0 in stage 23.0 (TID 45). 1171 bytes result sent to driver
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 23.0 (TID 47) in 6 ms on localhost (1/3)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 23.0 (TID 45) in 8 ms on localhost (2/3)
19/03/14 09:26:35 INFO executor.Executor: Finished task 1.0 in stage 23.0 (TID 46). 1306 bytes result sent to driver
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 23.0 (TID 46) in 10 ms on localhost (3/3)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: ResultStage 23 (first at ComparisonsSuite.scala:40) finished in 0.010 s
19/03/14 09:26:35 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 23.0, whose tasks have all completed, from pool 
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Job 11 finished: first at ComparisonsSuite.scala:40, took 0.017754 s
19/03/14 09:26:35 INFO spark.SparkContext: Starting job: first at ComparisonsSuite.scala:40
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Registering RDD 25 (groupBy at SingleReadBucket.scala:34)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Got job 12 (first at ComparisonsSuite.scala:40) with 1 output partitions
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Final stage: ResultStage 25 (first at ComparisonsSuite.scala:40)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 24)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Missing parents: List(ShuffleMapStage 24)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 24 (MapPartitionsRDD[25] at groupBy at SingleReadBucket.scala:34), which has no missing parents
19/03/14 09:26:35 INFO storage.MemoryStore: Block broadcast_18 stored as values in memory (estimated size 3.5 KB, free 22.6 KB)
19/03/14 09:26:35 INFO storage.MemoryStore: Block broadcast_18_piece0 stored as bytes in memory (estimated size 1915.0 B, free 24.5 KB)
19/03/14 09:26:35 INFO storage.BlockManagerInfo: Added broadcast_18_piece0 in memory on localhost:37380 (size: 1915.0 B, free: 522.0 MB)
19/03/14 09:26:35 INFO spark.SparkContext: Created broadcast 18 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 24 (MapPartitionsRDD[25] at groupBy at SingleReadBucket.scala:34)
19/03/14 09:26:35 INFO scheduler.TaskSchedulerImpl: Adding task set 24.0 with 4 tasks
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 24.0 (TID 48, localhost, partition 0,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 24.0 (TID 49, localhost, partition 1,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 24.0 (TID 50, localhost, partition 2,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 24.0 (TID 51, localhost, partition 3,PROCESS_LOCAL, 2144 bytes)
19/03/14 09:26:35 INFO executor.Executor: Running task 0.0 in stage 24.0 (TID 48)
19/03/14 09:26:35 INFO executor.Executor: Running task 1.0 in stage 24.0 (TID 49)
19/03/14 09:26:35 INFO executor.Executor: Running task 2.0 in stage 24.0 (TID 50)
19/03/14 09:26:35 INFO executor.Executor: Running task 3.0 in stage 24.0 (TID 51)
19/03/14 09:26:35 INFO executor.Executor: Finished task 2.0 in stage 24.0 (TID 50). 1090 bytes result sent to driver
19/03/14 09:26:35 INFO executor.Executor: Finished task 1.0 in stage 24.0 (TID 49). 1090 bytes result sent to driver
19/03/14 09:26:35 INFO executor.Executor: Finished task 0.0 in stage 24.0 (TID 48). 1090 bytes result sent to driver
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 24.0 (TID 50) in 8 ms on localhost (1/4)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 24.0 (TID 49) in 10 ms on localhost (2/4)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 24.0 (TID 48) in 12 ms on localhost (3/4)
19/03/14 09:26:35 INFO executor.Executor: Finished task 3.0 in stage 24.0 (TID 51). 1090 bytes result sent to driver
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 24.0 (TID 51) in 14 ms on localhost (4/4)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: ShuffleMapStage 24 (groupBy at SingleReadBucket.scala:34) finished in 0.019 s
19/03/14 09:26:35 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 24.0, whose tasks have all completed, from pool 
19/03/14 09:26:35 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:35 INFO scheduler.DAGScheduler: running: Set()
19/03/14 09:26:35 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 25)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Submitting ResultStage 25 (MapPartitionsRDD[27] at map at SingleReadBucket.scala:35), which has no missing parents
19/03/14 09:26:35 INFO storage.MemoryStore: Block broadcast_19 stored as values in memory (estimated size 4.6 KB, free 29.0 KB)
19/03/14 09:26:35 INFO storage.MemoryStore: Block broadcast_19_piece0 stored as bytes in memory (estimated size 2.3 KB, free 31.4 KB)
19/03/14 09:26:35 INFO storage.BlockManagerInfo: Added broadcast_19_piece0 in memory on localhost:37380 (size: 2.3 KB, free: 522.0 MB)
19/03/14 09:26:35 INFO spark.SparkContext: Created broadcast 19 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Submitting 1 missing tasks from ResultStage 25 (MapPartitionsRDD[27] at map at SingleReadBucket.scala:35)
19/03/14 09:26:35 INFO scheduler.TaskSchedulerImpl: Adding task set 25.0 with 1 tasks
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 25.0 (TID 52, localhost, partition 0,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:35 INFO executor.Executor: Running task 0.0 in stage 25.0 (TID 52)
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:35 INFO executor.Executor: Finished task 0.0 in stage 25.0 (TID 52). 1171 bytes result sent to driver
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 25.0 (TID 52) in 7 ms on localhost (1/1)
19/03/14 09:26:35 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 25.0, whose tasks have all completed, from pool 
19/03/14 09:26:35 INFO scheduler.DAGScheduler: ResultStage 25 (first at ComparisonsSuite.scala:40) finished in 0.007 s
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Job 12 finished: first at ComparisonsSuite.scala:40, took 0.036866 s
19/03/14 09:26:35 INFO spark.SparkContext: Starting job: first at ComparisonsSuite.scala:40
19/03/14 09:26:35 INFO spark.MapOutputTrackerMaster: Size of output statuses for shuffle 6 is 158 bytes
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Got job 13 (first at ComparisonsSuite.scala:40) with 3 output partitions
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Final stage: ResultStage 27 (first at ComparisonsSuite.scala:40)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 26)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Missing parents: List()
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Submitting ResultStage 27 (MapPartitionsRDD[27] at map at SingleReadBucket.scala:35), which has no missing parents
19/03/14 09:26:35 INFO storage.MemoryStore: Block broadcast_20 stored as values in memory (estimated size 4.6 KB, free 35.9 KB)
19/03/14 09:26:35 INFO storage.MemoryStore: Block broadcast_20_piece0 stored as bytes in memory (estimated size 2.3 KB, free 38.2 KB)
19/03/14 09:26:35 INFO storage.BlockManagerInfo: Added broadcast_20_piece0 in memory on localhost:37380 (size: 2.3 KB, free: 522.0 MB)
19/03/14 09:26:35 INFO spark.SparkContext: Created broadcast 20 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Submitting 3 missing tasks from ResultStage 27 (MapPartitionsRDD[27] at map at SingleReadBucket.scala:35)
19/03/14 09:26:35 INFO scheduler.TaskSchedulerImpl: Adding task set 27.0 with 3 tasks
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 27.0 (TID 53, localhost, partition 1,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 27.0 (TID 54, localhost, partition 2,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 27.0 (TID 55, localhost, partition 3,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:35 INFO executor.Executor: Running task 2.0 in stage 27.0 (TID 55)
19/03/14 09:26:35 INFO executor.Executor: Running task 0.0 in stage 27.0 (TID 53)
19/03/14 09:26:35 INFO executor.Executor: Running task 1.0 in stage 27.0 (TID 54)
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:35 INFO executor.Executor: Finished task 2.0 in stage 27.0 (TID 55). 1171 bytes result sent to driver
19/03/14 09:26:35 INFO executor.Executor: Finished task 1.0 in stage 27.0 (TID 54). 1306 bytes result sent to driver
19/03/14 09:26:35 INFO executor.Executor: Finished task 0.0 in stage 27.0 (TID 53). 1171 bytes result sent to driver
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 27.0 (TID 55) in 7 ms on localhost (1/3)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 27.0 (TID 54) in 7 ms on localhost (2/3)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 27.0 (TID 53) in 8 ms on localhost (3/3)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: ResultStage 27 (first at ComparisonsSuite.scala:40) finished in 0.009 s
19/03/14 09:26:35 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 27.0, whose tasks have all completed, from pool 
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Job 13 finished: first at ComparisonsSuite.scala:40, took 0.014483 s
19/03/14 09:26:35 INFO spark.SparkContext: Starting job: first at ComparisonsSuite.scala:40
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Registering RDD 29 (groupBy at SingleReadBucket.scala:34)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Got job 14 (first at ComparisonsSuite.scala:40) with 1 output partitions
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Final stage: ResultStage 29 (first at ComparisonsSuite.scala:40)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 28)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Missing parents: List(ShuffleMapStage 28)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 28 (MapPartitionsRDD[29] at groupBy at SingleReadBucket.scala:34), which has no missing parents
19/03/14 09:26:35 INFO storage.MemoryStore: Block broadcast_21 stored as values in memory (estimated size 3.5 KB, free 41.7 KB)
19/03/14 09:26:35 INFO storage.MemoryStore: Block broadcast_21_piece0 stored as bytes in memory (estimated size 1913.0 B, free 43.6 KB)
19/03/14 09:26:35 INFO storage.BlockManagerInfo: Added broadcast_21_piece0 in memory on localhost:37380 (size: 1913.0 B, free: 522.0 MB)
19/03/14 09:26:35 INFO spark.SparkContext: Created broadcast 21 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 28 (MapPartitionsRDD[29] at groupBy at SingleReadBucket.scala:34)
19/03/14 09:26:35 INFO scheduler.TaskSchedulerImpl: Adding task set 28.0 with 4 tasks
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 28.0 (TID 56, localhost, partition 0,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 28.0 (TID 57, localhost, partition 1,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 28.0 (TID 58, localhost, partition 2,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 28.0 (TID 59, localhost, partition 3,PROCESS_LOCAL, 2144 bytes)
19/03/14 09:26:35 INFO executor.Executor: Running task 0.0 in stage 28.0 (TID 56)
19/03/14 09:26:35 INFO executor.Executor: Running task 2.0 in stage 28.0 (TID 58)
19/03/14 09:26:35 INFO executor.Executor: Running task 1.0 in stage 28.0 (TID 57)
19/03/14 09:26:35 INFO executor.Executor: Running task 3.0 in stage 28.0 (TID 59)
19/03/14 09:26:35 INFO executor.Executor: Finished task 0.0 in stage 28.0 (TID 56). 1090 bytes result sent to driver
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 28.0 (TID 56) in 11 ms on localhost (1/4)
19/03/14 09:26:35 INFO executor.Executor: Finished task 1.0 in stage 28.0 (TID 57). 1090 bytes result sent to driver
19/03/14 09:26:35 INFO executor.Executor: Finished task 2.0 in stage 28.0 (TID 58). 1090 bytes result sent to driver
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 28.0 (TID 58) in 10 ms on localhost (2/4)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 28.0 (TID 57) in 11 ms on localhost (3/4)
19/03/14 09:26:35 INFO executor.Executor: Finished task 3.0 in stage 28.0 (TID 59). 1090 bytes result sent to driver
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 28.0 (TID 59) in 14 ms on localhost (4/4)
19/03/14 09:26:35 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 28.0, whose tasks have all completed, from pool 
19/03/14 09:26:35 INFO scheduler.DAGScheduler: ShuffleMapStage 28 (groupBy at SingleReadBucket.scala:34) finished in 0.019 s
19/03/14 09:26:35 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:35 INFO scheduler.DAGScheduler: running: Set()
19/03/14 09:26:35 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 29)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Submitting ResultStage 29 (MapPartitionsRDD[31] at map at SingleReadBucket.scala:35), which has no missing parents
19/03/14 09:26:35 INFO storage.MemoryStore: Block broadcast_22 stored as values in memory (estimated size 4.6 KB, free 48.2 KB)
19/03/14 09:26:35 INFO storage.MemoryStore: Block broadcast_22_piece0 stored as bytes in memory (estimated size 2.3 KB, free 50.5 KB)
19/03/14 09:26:35 INFO storage.BlockManagerInfo: Added broadcast_22_piece0 in memory on localhost:37380 (size: 2.3 KB, free: 522.0 MB)
19/03/14 09:26:35 INFO spark.SparkContext: Created broadcast 22 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Submitting 1 missing tasks from ResultStage 29 (MapPartitionsRDD[31] at map at SingleReadBucket.scala:35)
19/03/14 09:26:35 INFO scheduler.TaskSchedulerImpl: Adding task set 29.0 with 1 tasks
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 29.0 (TID 60, localhost, partition 0,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:35 INFO executor.Executor: Running task 0.0 in stage 29.0 (TID 60)
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:35 INFO executor.Executor: Finished task 0.0 in stage 29.0 (TID 60). 1171 bytes result sent to driver
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 29.0 (TID 60) in 6 ms on localhost (1/1)
19/03/14 09:26:35 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 29.0, whose tasks have all completed, from pool 
19/03/14 09:26:35 INFO scheduler.DAGScheduler: ResultStage 29 (first at ComparisonsSuite.scala:40) finished in 0.007 s
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Job 14 finished: first at ComparisonsSuite.scala:40, took 0.035465 s
19/03/14 09:26:35 INFO spark.SparkContext: Starting job: first at ComparisonsSuite.scala:40
19/03/14 09:26:35 INFO spark.MapOutputTrackerMaster: Size of output statuses for shuffle 7 is 158 bytes
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Got job 15 (first at ComparisonsSuite.scala:40) with 3 output partitions
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Final stage: ResultStage 31 (first at ComparisonsSuite.scala:40)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 30)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Missing parents: List()
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Submitting ResultStage 31 (MapPartitionsRDD[31] at map at SingleReadBucket.scala:35), which has no missing parents
19/03/14 09:26:35 INFO storage.MemoryStore: Block broadcast_23 stored as values in memory (estimated size 4.6 KB, free 55.0 KB)
19/03/14 09:26:35 INFO storage.MemoryStore: Block broadcast_23_piece0 stored as bytes in memory (estimated size 2.3 KB, free 57.4 KB)
19/03/14 09:26:35 INFO storage.BlockManagerInfo: Added broadcast_23_piece0 in memory on localhost:37380 (size: 2.3 KB, free: 522.0 MB)
19/03/14 09:26:35 INFO spark.SparkContext: Created broadcast 23 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Submitting 3 missing tasks from ResultStage 31 (MapPartitionsRDD[31] at map at SingleReadBucket.scala:35)
19/03/14 09:26:35 INFO scheduler.TaskSchedulerImpl: Adding task set 31.0 with 3 tasks
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 31.0 (TID 61, localhost, partition 1,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 31.0 (TID 62, localhost, partition 2,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 31.0 (TID 63, localhost, partition 3,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:35 INFO executor.Executor: Running task 0.0 in stage 31.0 (TID 61)
19/03/14 09:26:35 INFO executor.Executor: Running task 2.0 in stage 31.0 (TID 63)
19/03/14 09:26:35 INFO executor.Executor: Running task 1.0 in stage 31.0 (TID 62)
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 1 ms
19/03/14 09:26:35 INFO executor.Executor: Finished task 0.0 in stage 31.0 (TID 61). 1171 bytes result sent to driver
19/03/14 09:26:35 INFO executor.Executor: Finished task 2.0 in stage 31.0 (TID 63). 1171 bytes result sent to driver
19/03/14 09:26:35 INFO executor.Executor: Finished task 1.0 in stage 31.0 (TID 62). 1306 bytes result sent to driver
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 31.0 (TID 61) in 9 ms on localhost (1/3)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 31.0 (TID 63) in 8 ms on localhost (2/3)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 31.0 (TID 62) in 10 ms on localhost (3/3)
19/03/14 09:26:35 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 31.0, whose tasks have all completed, from pool 
19/03/14 09:26:35 INFO scheduler.DAGScheduler: ResultStage 31 (first at ComparisonsSuite.scala:40) finished in 0.010 s
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Job 15 finished: first at ComparisonsSuite.scala:40, took 0.016353 s
19/03/14 09:26:35 INFO spark.MapOutputTrackerMasterEndpoint: MapOutputTrackerMasterEndpoint stopped!
19/03/14 09:26:35 INFO storage.MemoryStore: MemoryStore cleared
19/03/14 09:26:35 INFO storage.BlockManager: BlockManager stopped
19/03/14 09:26:35 INFO storage.BlockManagerMaster: BlockManagerMaster stopped
19/03/14 09:26:35 INFO scheduler.OutputCommitCoordinator$OutputCommitCoordinatorEndpoint: OutputCommitCoordinator stopped!
19/03/14 09:26:35 INFO remote.RemoteActorRefProvider$RemotingTerminator: Shutting down remote daemon.
19/03/14 09:26:35 INFO remote.RemoteActorRefProvider$RemotingTerminator: Remote daemon shut down; proceeding with flushing remote transports.
19/03/14 09:26:35 INFO spark.SparkContext: Successfully stopped SparkContext
19/03/14 09:26:35 INFO spark.SparkContext: Running Spark version 1.6.1
19/03/14 09:26:35 INFO remote.RemoteActorRefProvider$RemotingTerminator: Remoting shut down.
19/03/14 09:26:35 INFO spark.SecurityManager: Changing view acls to: jenkins
19/03/14 09:26:35 INFO spark.SecurityManager: Changing modify acls to: jenkins
19/03/14 09:26:35 INFO spark.SecurityManager: SecurityManager: authentication disabled; ui acls disabled; users with view permissions: Set(jenkins); users with modify permissions: Set(jenkins)
19/03/14 09:26:35 INFO util.Utils: Successfully started service 'sparkDriver' on port 54898.
19/03/14 09:26:35 INFO slf4j.Slf4jLogger: Slf4jLogger started
19/03/14 09:26:35 INFO Remoting: Starting remoting
19/03/14 09:26:35 INFO Remoting: Remoting started; listening on addresses :[akka.tcp://sparkDriverActorSystem@localhost:54899]
19/03/14 09:26:35 INFO util.Utils: Successfully started service 'sparkDriverActorSystem' on port 54899.
19/03/14 09:26:35 INFO spark.SparkEnv: Registering MapOutputTracker
19/03/14 09:26:35 INFO spark.SparkEnv: Registering BlockManagerMaster
19/03/14 09:26:35 INFO storage.DiskBlockManager: Created local directory at /tmp/blockmgr-a21e254c-d00a-4dde-af46-2896c2636cbe
19/03/14 09:26:35 INFO storage.MemoryStore: MemoryStore started with capacity 522.0 MB
19/03/14 09:26:35 INFO spark.SparkEnv: Registering OutputCommitCoordinator
19/03/14 09:26:35 INFO executor.Executor: Starting executor ID driver on host localhost
19/03/14 09:26:35 INFO util.Utils: Successfully started service 'org.apache.spark.network.netty.NettyBlockTransferService' on port 44722.
19/03/14 09:26:35 INFO netty.NettyBlockTransferService: Server created on 44722
19/03/14 09:26:35 INFO storage.BlockManagerMaster: Trying to register BlockManager
19/03/14 09:26:35 INFO storage.BlockManagerMasterEndpoint: Registering block manager localhost:44722 with 522.0 MB RAM, BlockManagerId(driver, localhost, 44722)
19/03/14 09:26:35 INFO storage.BlockManagerMaster: Registered BlockManager
19/03/14 09:26:35 INFO spark.MapOutputTrackerMasterEndpoint: MapOutputTrackerMasterEndpoint stopped!
19/03/14 09:26:35 INFO storage.MemoryStore: MemoryStore cleared
19/03/14 09:26:35 INFO storage.BlockManager: BlockManager stopped
19/03/14 09:26:35 INFO storage.BlockManagerMaster: BlockManagerMaster stopped
19/03/14 09:26:35 INFO scheduler.OutputCommitCoordinator$OutputCommitCoordinatorEndpoint: OutputCommitCoordinator stopped!
19/03/14 09:26:35 INFO remote.RemoteActorRefProvider$RemotingTerminator: Shutting down remote daemon.
19/03/14 09:26:35 INFO remote.RemoteActorRefProvider$RemotingTerminator: Remote daemon shut down; proceeding with flushing remote transports.
19/03/14 09:26:35 INFO spark.SparkContext: Successfully stopped SparkContext
- Mismatched mapped positions histogram generated
19/03/14 09:26:35 INFO spark.SparkContext: Running Spark version 1.6.1
19/03/14 09:26:35 INFO remote.RemoteActorRefProvider$RemotingTerminator: Remoting shut down.
19/03/14 09:26:35 INFO spark.SecurityManager: Changing view acls to: jenkins
19/03/14 09:26:35 INFO spark.SecurityManager: Changing modify acls to: jenkins
19/03/14 09:26:35 INFO spark.SecurityManager: SecurityManager: authentication disabled; ui acls disabled; users with view permissions: Set(jenkins); users with modify permissions: Set(jenkins)
19/03/14 09:26:35 INFO util.Utils: Successfully started service 'sparkDriver' on port 53320.
19/03/14 09:26:35 INFO slf4j.Slf4jLogger: Slf4jLogger started
19/03/14 09:26:35 INFO Remoting: Starting remoting
19/03/14 09:26:35 INFO Remoting: Remoting started; listening on addresses :[akka.tcp://sparkDriverActorSystem@localhost:53321]
19/03/14 09:26:35 INFO util.Utils: Successfully started service 'sparkDriverActorSystem' on port 53321.
19/03/14 09:26:35 INFO spark.SparkEnv: Registering MapOutputTracker
19/03/14 09:26:35 INFO spark.SparkEnv: Registering BlockManagerMaster
19/03/14 09:26:35 INFO storage.DiskBlockManager: Created local directory at /tmp/blockmgr-fea815f6-1b16-4f33-be7d-9e09dd2a30cb
19/03/14 09:26:35 INFO storage.MemoryStore: MemoryStore started with capacity 522.0 MB
19/03/14 09:26:35 INFO spark.SparkEnv: Registering OutputCommitCoordinator
19/03/14 09:26:35 INFO executor.Executor: Starting executor ID driver on host localhost
19/03/14 09:26:35 INFO util.Utils: Successfully started service 'org.apache.spark.network.netty.NettyBlockTransferService' on port 37759.
19/03/14 09:26:35 INFO netty.NettyBlockTransferService: Server created on 37759
19/03/14 09:26:35 INFO storage.BlockManagerMaster: Trying to register BlockManager
19/03/14 09:26:35 INFO storage.BlockManagerMasterEndpoint: Registering block manager localhost:37759 with 522.0 MB RAM, BlockManagerId(driver, localhost, 37759)
19/03/14 09:26:35 INFO storage.BlockManagerMaster: Registered BlockManager
19/03/14 09:26:35 INFO spark.SparkContext: Starting job: first at ComparisonsSuite.scala:40
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Registering RDD 1 (groupBy at SingleReadBucket.scala:34)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Got job 0 (first at ComparisonsSuite.scala:40) with 1 output partitions
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Final stage: ResultStage 1 (first at ComparisonsSuite.scala:40)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 0)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Missing parents: List(ShuffleMapStage 0)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 0 (MapPartitionsRDD[1] at groupBy at SingleReadBucket.scala:34), which has no missing parents
19/03/14 09:26:35 INFO storage.MemoryStore: Block broadcast_0 stored as values in memory (estimated size 3.5 KB, free 3.5 KB)
19/03/14 09:26:35 INFO storage.MemoryStore: Block broadcast_0_piece0 stored as bytes in memory (estimated size 1915.0 B, free 5.4 KB)
19/03/14 09:26:35 INFO storage.BlockManagerInfo: Added broadcast_0_piece0 in memory on localhost:37759 (size: 1915.0 B, free: 522.0 MB)
19/03/14 09:26:35 INFO spark.SparkContext: Created broadcast 0 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 0 (MapPartitionsRDD[1] at groupBy at SingleReadBucket.scala:34)
19/03/14 09:26:35 INFO scheduler.TaskSchedulerImpl: Adding task set 0.0 with 4 tasks
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 0.0 (TID 0, localhost, partition 0,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 0.0 (TID 1, localhost, partition 1,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 0.0 (TID 2, localhost, partition 2,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 0.0 (TID 3, localhost, partition 3,PROCESS_LOCAL, 2144 bytes)
19/03/14 09:26:35 INFO executor.Executor: Running task 0.0 in stage 0.0 (TID 0)
19/03/14 09:26:35 INFO executor.Executor: Running task 1.0 in stage 0.0 (TID 1)
19/03/14 09:26:35 INFO executor.Executor: Running task 2.0 in stage 0.0 (TID 2)
19/03/14 09:26:35 INFO executor.Executor: Running task 3.0 in stage 0.0 (TID 3)
19/03/14 09:26:35 INFO executor.Executor: Finished task 2.0 in stage 0.0 (TID 2). 1090 bytes result sent to driver
19/03/14 09:26:35 INFO executor.Executor: Finished task 1.0 in stage 0.0 (TID 1). 1090 bytes result sent to driver
19/03/14 09:26:35 INFO executor.Executor: Finished task 0.0 in stage 0.0 (TID 0). 1090 bytes result sent to driver
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 0.0 (TID 0) in 14 ms on localhost (1/4)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 0.0 (TID 2) in 11 ms on localhost (2/4)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 0.0 (TID 1) in 12 ms on localhost (3/4)
19/03/14 09:26:35 INFO executor.Executor: Finished task 3.0 in stage 0.0 (TID 3). 1090 bytes result sent to driver
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 0.0 (TID 3) in 14 ms on localhost (4/4)
19/03/14 09:26:35 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 0.0, whose tasks have all completed, from pool 
19/03/14 09:26:35 INFO scheduler.DAGScheduler: ShuffleMapStage 0 (groupBy at SingleReadBucket.scala:34) finished in 0.019 s
19/03/14 09:26:35 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:35 INFO scheduler.DAGScheduler: running: Set()
19/03/14 09:26:35 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 1)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Submitting ResultStage 1 (MapPartitionsRDD[3] at map at SingleReadBucket.scala:35), which has no missing parents
19/03/14 09:26:35 INFO storage.MemoryStore: Block broadcast_1 stored as values in memory (estimated size 4.6 KB, free 9.9 KB)
19/03/14 09:26:35 INFO storage.MemoryStore: Block broadcast_1_piece0 stored as bytes in memory (estimated size 2.3 KB, free 12.2 KB)
19/03/14 09:26:35 INFO storage.BlockManagerInfo: Added broadcast_1_piece0 in memory on localhost:37759 (size: 2.3 KB, free: 522.0 MB)
19/03/14 09:26:35 INFO spark.SparkContext: Created broadcast 1 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Submitting 1 missing tasks from ResultStage 1 (MapPartitionsRDD[3] at map at SingleReadBucket.scala:35)
19/03/14 09:26:35 INFO scheduler.TaskSchedulerImpl: Adding task set 1.0 with 1 tasks
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 1.0 (TID 4, localhost, partition 0,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:35 INFO executor.Executor: Running task 0.0 in stage 1.0 (TID 4)
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:35 INFO executor.Executor: Finished task 0.0 in stage 1.0 (TID 4). 1171 bytes result sent to driver
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 1.0 (TID 4) in 6 ms on localhost (1/1)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: ResultStage 1 (first at ComparisonsSuite.scala:40) finished in 0.006 s
19/03/14 09:26:35 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 1.0, whose tasks have all completed, from pool 
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Job 0 finished: first at ComparisonsSuite.scala:40, took 0.034938 s
19/03/14 09:26:35 INFO spark.SparkContext: Starting job: first at ComparisonsSuite.scala:40
19/03/14 09:26:35 INFO spark.MapOutputTrackerMaster: Size of output statuses for shuffle 0 is 158 bytes
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Got job 1 (first at ComparisonsSuite.scala:40) with 3 output partitions
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Final stage: ResultStage 3 (first at ComparisonsSuite.scala:40)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 2)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Missing parents: List()
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Submitting ResultStage 3 (MapPartitionsRDD[3] at map at SingleReadBucket.scala:35), which has no missing parents
19/03/14 09:26:35 INFO storage.MemoryStore: Block broadcast_2 stored as values in memory (estimated size 4.6 KB, free 16.8 KB)
19/03/14 09:26:35 INFO storage.MemoryStore: Block broadcast_2_piece0 stored as bytes in memory (estimated size 2.3 KB, free 19.1 KB)
19/03/14 09:26:35 INFO storage.BlockManagerInfo: Added broadcast_2_piece0 in memory on localhost:37759 (size: 2.3 KB, free: 522.0 MB)
19/03/14 09:26:35 INFO spark.SparkContext: Created broadcast 2 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Submitting 3 missing tasks from ResultStage 3 (MapPartitionsRDD[3] at map at SingleReadBucket.scala:35)
19/03/14 09:26:35 INFO scheduler.TaskSchedulerImpl: Adding task set 3.0 with 3 tasks
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 3.0 (TID 5, localhost, partition 1,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 3.0 (TID 6, localhost, partition 2,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 3.0 (TID 7, localhost, partition 3,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:35 INFO executor.Executor: Running task 1.0 in stage 3.0 (TID 6)
19/03/14 09:26:35 INFO executor.Executor: Running task 2.0 in stage 3.0 (TID 7)
19/03/14 09:26:35 INFO executor.Executor: Running task 0.0 in stage 3.0 (TID 5)
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:35 INFO executor.Executor: Finished task 2.0 in stage 3.0 (TID 7). 1171 bytes result sent to driver
19/03/14 09:26:35 INFO executor.Executor: Finished task 1.0 in stage 3.0 (TID 6). 1306 bytes result sent to driver
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 3.0 (TID 7) in 6 ms on localhost (1/3)
19/03/14 09:26:35 INFO executor.Executor: Finished task 0.0 in stage 3.0 (TID 5). 1171 bytes result sent to driver
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 3.0 (TID 6) in 8 ms on localhost (2/3)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 3.0 (TID 5) in 9 ms on localhost (3/3)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: ResultStage 3 (first at ComparisonsSuite.scala:40) finished in 0.010 s
19/03/14 09:26:35 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 3.0, whose tasks have all completed, from pool 
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Job 1 finished: first at ComparisonsSuite.scala:40, took 0.015012 s
19/03/14 09:26:35 INFO spark.SparkContext: Starting job: first at ComparisonsSuite.scala:40
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Registering RDD 5 (groupBy at SingleReadBucket.scala:34)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Got job 2 (first at ComparisonsSuite.scala:40) with 1 output partitions
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Final stage: ResultStage 5 (first at ComparisonsSuite.scala:40)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 4)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Missing parents: List(ShuffleMapStage 4)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 4 (MapPartitionsRDD[5] at groupBy at SingleReadBucket.scala:34), which has no missing parents
19/03/14 09:26:35 INFO storage.MemoryStore: Block broadcast_3 stored as values in memory (estimated size 3.5 KB, free 22.6 KB)
19/03/14 09:26:35 INFO storage.MemoryStore: Block broadcast_3_piece0 stored as bytes in memory (estimated size 1912.0 B, free 24.5 KB)
19/03/14 09:26:35 INFO storage.BlockManagerInfo: Added broadcast_3_piece0 in memory on localhost:37759 (size: 1912.0 B, free: 522.0 MB)
19/03/14 09:26:35 INFO spark.SparkContext: Created broadcast 3 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 4 (MapPartitionsRDD[5] at groupBy at SingleReadBucket.scala:34)
19/03/14 09:26:35 INFO scheduler.TaskSchedulerImpl: Adding task set 4.0 with 4 tasks
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 4.0 (TID 8, localhost, partition 0,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 4.0 (TID 9, localhost, partition 1,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 4.0 (TID 10, localhost, partition 2,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 4.0 (TID 11, localhost, partition 3,PROCESS_LOCAL, 2144 bytes)
19/03/14 09:26:35 INFO executor.Executor: Running task 2.0 in stage 4.0 (TID 10)
19/03/14 09:26:35 INFO executor.Executor: Running task 1.0 in stage 4.0 (TID 9)
19/03/14 09:26:35 INFO executor.Executor: Running task 0.0 in stage 4.0 (TID 8)
19/03/14 09:26:35 INFO executor.Executor: Running task 3.0 in stage 4.0 (TID 11)
19/03/14 09:26:35 INFO executor.Executor: Finished task 2.0 in stage 4.0 (TID 10). 1090 bytes result sent to driver
19/03/14 09:26:35 INFO executor.Executor: Finished task 1.0 in stage 4.0 (TID 9). 1090 bytes result sent to driver
19/03/14 09:26:35 INFO executor.Executor: Finished task 0.0 in stage 4.0 (TID 8). 1090 bytes result sent to driver
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 4.0 (TID 10) in 8 ms on localhost (1/4)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 4.0 (TID 9) in 10 ms on localhost (2/4)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 4.0 (TID 8) in 12 ms on localhost (3/4)
19/03/14 09:26:35 INFO executor.Executor: Finished task 3.0 in stage 4.0 (TID 11). 1090 bytes result sent to driver
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 4.0 (TID 11) in 16 ms on localhost (4/4)
19/03/14 09:26:35 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 4.0, whose tasks have all completed, from pool 
19/03/14 09:26:35 INFO scheduler.DAGScheduler: ShuffleMapStage 4 (groupBy at SingleReadBucket.scala:34) finished in 0.021 s
19/03/14 09:26:35 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:35 INFO scheduler.DAGScheduler: running: Set()
19/03/14 09:26:35 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 5)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Submitting ResultStage 5 (MapPartitionsRDD[7] at map at SingleReadBucket.scala:35), which has no missing parents
19/03/14 09:26:35 INFO storage.MemoryStore: Block broadcast_4 stored as values in memory (estimated size 4.6 KB, free 29.0 KB)
19/03/14 09:26:35 INFO storage.MemoryStore: Block broadcast_4_piece0 stored as bytes in memory (estimated size 2.3 KB, free 31.4 KB)
19/03/14 09:26:35 INFO storage.BlockManagerInfo: Added broadcast_4_piece0 in memory on localhost:37759 (size: 2.3 KB, free: 522.0 MB)
19/03/14 09:26:35 INFO spark.SparkContext: Created broadcast 4 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Submitting 1 missing tasks from ResultStage 5 (MapPartitionsRDD[7] at map at SingleReadBucket.scala:35)
19/03/14 09:26:35 INFO scheduler.TaskSchedulerImpl: Adding task set 5.0 with 1 tasks
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 5.0 (TID 12, localhost, partition 0,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:35 INFO executor.Executor: Running task 0.0 in stage 5.0 (TID 12)
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:35 INFO executor.Executor: Finished task 0.0 in stage 5.0 (TID 12). 1171 bytes result sent to driver
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 5.0 (TID 12) in 10 ms on localhost (1/1)
19/03/14 09:26:35 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 5.0, whose tasks have all completed, from pool 
19/03/14 09:26:35 INFO scheduler.DAGScheduler: ResultStage 5 (first at ComparisonsSuite.scala:40) finished in 0.010 s
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Job 2 finished: first at ComparisonsSuite.scala:40, took 0.042387 s
19/03/14 09:26:35 INFO spark.SparkContext: Starting job: first at ComparisonsSuite.scala:40
19/03/14 09:26:35 INFO spark.MapOutputTrackerMaster: Size of output statuses for shuffle 1 is 158 bytes
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Got job 3 (first at ComparisonsSuite.scala:40) with 3 output partitions
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Final stage: ResultStage 7 (first at ComparisonsSuite.scala:40)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 6)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Missing parents: List()
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Submitting ResultStage 7 (MapPartitionsRDD[7] at map at SingleReadBucket.scala:35), which has no missing parents
19/03/14 09:26:35 INFO storage.MemoryStore: Block broadcast_5 stored as values in memory (estimated size 4.6 KB, free 35.9 KB)
19/03/14 09:26:35 INFO storage.MemoryStore: Block broadcast_5_piece0 stored as bytes in memory (estimated size 2.3 KB, free 38.2 KB)
19/03/14 09:26:35 INFO storage.BlockManagerInfo: Added broadcast_5_piece0 in memory on localhost:37759 (size: 2.3 KB, free: 522.0 MB)
19/03/14 09:26:35 INFO spark.SparkContext: Created broadcast 5 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Submitting 3 missing tasks from ResultStage 7 (MapPartitionsRDD[7] at map at SingleReadBucket.scala:35)
19/03/14 09:26:35 INFO scheduler.TaskSchedulerImpl: Adding task set 7.0 with 3 tasks
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 7.0 (TID 13, localhost, partition 1,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 7.0 (TID 14, localhost, partition 2,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 7.0 (TID 15, localhost, partition 3,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:35 INFO executor.Executor: Running task 0.0 in stage 7.0 (TID 13)
19/03/14 09:26:35 INFO executor.Executor: Running task 1.0 in stage 7.0 (TID 14)
19/03/14 09:26:35 INFO executor.Executor: Running task 2.0 in stage 7.0 (TID 15)
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:35 INFO executor.Executor: Finished task 0.0 in stage 7.0 (TID 13). 1171 bytes result sent to driver
19/03/14 09:26:35 INFO executor.Executor: Finished task 2.0 in stage 7.0 (TID 15). 1171 bytes result sent to driver
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 7.0 (TID 13) in 7 ms on localhost (1/3)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 7.0 (TID 15) in 6 ms on localhost (2/3)
19/03/14 09:26:35 INFO executor.Executor: Finished task 1.0 in stage 7.0 (TID 14). 1306 bytes result sent to driver
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 7.0 (TID 14) in 10 ms on localhost (3/3)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: ResultStage 7 (first at ComparisonsSuite.scala:40) finished in 0.010 s
19/03/14 09:26:35 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 7.0, whose tasks have all completed, from pool 
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Job 3 finished: first at ComparisonsSuite.scala:40, took 0.016121 s
19/03/14 09:26:35 INFO spark.SparkContext: Starting job: first at ComparisonsSuite.scala:40
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Registering RDD 9 (groupBy at SingleReadBucket.scala:34)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Got job 4 (first at ComparisonsSuite.scala:40) with 1 output partitions
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Final stage: ResultStage 9 (first at ComparisonsSuite.scala:40)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 8)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Missing parents: List(ShuffleMapStage 8)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 8 (MapPartitionsRDD[9] at groupBy at SingleReadBucket.scala:34), which has no missing parents
19/03/14 09:26:35 INFO storage.MemoryStore: Block broadcast_6 stored as values in memory (estimated size 3.5 KB, free 41.7 KB)
19/03/14 09:26:35 INFO storage.MemoryStore: Block broadcast_6_piece0 stored as bytes in memory (estimated size 1915.0 B, free 43.6 KB)
19/03/14 09:26:35 INFO storage.BlockManagerInfo: Added broadcast_6_piece0 in memory on localhost:37759 (size: 1915.0 B, free: 522.0 MB)
19/03/14 09:26:35 INFO spark.SparkContext: Created broadcast 6 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 8 (MapPartitionsRDD[9] at groupBy at SingleReadBucket.scala:34)
19/03/14 09:26:35 INFO scheduler.TaskSchedulerImpl: Adding task set 8.0 with 4 tasks
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 8.0 (TID 16, localhost, partition 0,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 8.0 (TID 17, localhost, partition 1,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 8.0 (TID 18, localhost, partition 2,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 8.0 (TID 19, localhost, partition 3,PROCESS_LOCAL, 2144 bytes)
19/03/14 09:26:35 INFO executor.Executor: Running task 1.0 in stage 8.0 (TID 17)
19/03/14 09:26:35 INFO executor.Executor: Running task 0.0 in stage 8.0 (TID 16)
19/03/14 09:26:35 INFO executor.Executor: Running task 3.0 in stage 8.0 (TID 19)
19/03/14 09:26:35 INFO executor.Executor: Running task 2.0 in stage 8.0 (TID 18)
19/03/14 09:26:35 INFO executor.Executor: Finished task 1.0 in stage 8.0 (TID 17). 1090 bytes result sent to driver
19/03/14 09:26:35 INFO executor.Executor: Finished task 2.0 in stage 8.0 (TID 18). 1090 bytes result sent to driver
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 8.0 (TID 17) in 7 ms on localhost (1/4)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 8.0 (TID 18) in 7 ms on localhost (2/4)
19/03/14 09:26:35 INFO executor.Executor: Finished task 0.0 in stage 8.0 (TID 16). 1090 bytes result sent to driver
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 8.0 (TID 16) in 11 ms on localhost (3/4)
19/03/14 09:26:35 INFO executor.Executor: Finished task 3.0 in stage 8.0 (TID 19). 1090 bytes result sent to driver
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 8.0 (TID 19) in 10 ms on localhost (4/4)
19/03/14 09:26:35 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 8.0, whose tasks have all completed, from pool 
19/03/14 09:26:35 INFO scheduler.DAGScheduler: ShuffleMapStage 8 (groupBy at SingleReadBucket.scala:34) finished in 0.014 s
19/03/14 09:26:35 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:35 INFO scheduler.DAGScheduler: running: Set()
19/03/14 09:26:35 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 9)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Submitting ResultStage 9 (MapPartitionsRDD[11] at map at SingleReadBucket.scala:35), which has no missing parents
19/03/14 09:26:35 INFO storage.MemoryStore: Block broadcast_7 stored as values in memory (estimated size 4.6 KB, free 48.2 KB)
19/03/14 09:26:35 INFO storage.MemoryStore: Block broadcast_7_piece0 stored as bytes in memory (estimated size 2.3 KB, free 50.5 KB)
19/03/14 09:26:35 INFO storage.BlockManagerInfo: Added broadcast_7_piece0 in memory on localhost:37759 (size: 2.3 KB, free: 522.0 MB)
19/03/14 09:26:35 INFO spark.SparkContext: Created broadcast 7 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Submitting 1 missing tasks from ResultStage 9 (MapPartitionsRDD[11] at map at SingleReadBucket.scala:35)
19/03/14 09:26:35 INFO scheduler.TaskSchedulerImpl: Adding task set 9.0 with 1 tasks
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 9.0 (TID 20, localhost, partition 0,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:35 INFO executor.Executor: Running task 0.0 in stage 9.0 (TID 20)
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:35 INFO executor.Executor: Finished task 0.0 in stage 9.0 (TID 20). 1171 bytes result sent to driver
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 9.0 (TID 20) in 10 ms on localhost (1/1)
19/03/14 09:26:35 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 9.0, whose tasks have all completed, from pool 
19/03/14 09:26:35 INFO scheduler.DAGScheduler: ResultStage 9 (first at ComparisonsSuite.scala:40) finished in 0.011 s
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Job 4 finished: first at ComparisonsSuite.scala:40, took 0.035299 s
19/03/14 09:26:35 INFO spark.SparkContext: Starting job: first at ComparisonsSuite.scala:40
19/03/14 09:26:35 INFO spark.MapOutputTrackerMaster: Size of output statuses for shuffle 2 is 158 bytes
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Got job 5 (first at ComparisonsSuite.scala:40) with 3 output partitions
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Final stage: ResultStage 11 (first at ComparisonsSuite.scala:40)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 10)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Missing parents: List()
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Submitting ResultStage 11 (MapPartitionsRDD[11] at map at SingleReadBucket.scala:35), which has no missing parents
19/03/14 09:26:35 INFO storage.MemoryStore: Block broadcast_8 stored as values in memory (estimated size 4.6 KB, free 55.0 KB)
19/03/14 09:26:35 INFO storage.MemoryStore: Block broadcast_8_piece0 stored as bytes in memory (estimated size 2.3 KB, free 57.4 KB)
19/03/14 09:26:35 INFO storage.BlockManagerInfo: Added broadcast_8_piece0 in memory on localhost:37759 (size: 2.3 KB, free: 522.0 MB)
19/03/14 09:26:35 INFO spark.SparkContext: Created broadcast 8 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Submitting 3 missing tasks from ResultStage 11 (MapPartitionsRDD[11] at map at SingleReadBucket.scala:35)
19/03/14 09:26:35 INFO scheduler.TaskSchedulerImpl: Adding task set 11.0 with 3 tasks
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 11.0 (TID 21, localhost, partition 1,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 11.0 (TID 22, localhost, partition 2,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 11.0 (TID 23, localhost, partition 3,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:35 INFO executor.Executor: Running task 0.0 in stage 11.0 (TID 21)
19/03/14 09:26:35 INFO executor.Executor: Running task 1.0 in stage 11.0 (TID 22)
19/03/14 09:26:35 INFO executor.Executor: Running task 2.0 in stage 11.0 (TID 23)
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:35 INFO executor.Executor: Finished task 0.0 in stage 11.0 (TID 21). 1171 bytes result sent to driver
19/03/14 09:26:35 INFO executor.Executor: Finished task 2.0 in stage 11.0 (TID 23). 1171 bytes result sent to driver
19/03/14 09:26:35 INFO executor.Executor: Finished task 1.0 in stage 11.0 (TID 22). 1306 bytes result sent to driver
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 11.0 (TID 21) in 8 ms on localhost (1/3)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 11.0 (TID 23) in 7 ms on localhost (2/3)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 11.0 (TID 22) in 7 ms on localhost (3/3)
19/03/14 09:26:35 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 11.0, whose tasks have all completed, from pool 
19/03/14 09:26:35 INFO scheduler.DAGScheduler: ResultStage 11 (first at ComparisonsSuite.scala:40) finished in 0.009 s
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Job 5 finished: first at ComparisonsSuite.scala:40, took 0.014679 s
19/03/14 09:26:35 INFO spark.SparkContext: Starting job: first at ComparisonsSuite.scala:40
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Registering RDD 13 (groupBy at SingleReadBucket.scala:34)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Got job 6 (first at ComparisonsSuite.scala:40) with 1 output partitions
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Final stage: ResultStage 13 (first at ComparisonsSuite.scala:40)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 12)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Missing parents: List(ShuffleMapStage 12)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 12 (MapPartitionsRDD[13] at groupBy at SingleReadBucket.scala:34), which has no missing parents
19/03/14 09:26:35 INFO storage.MemoryStore: Block broadcast_9 stored as values in memory (estimated size 3.5 KB, free 60.9 KB)
19/03/14 09:26:35 INFO storage.MemoryStore: Block broadcast_9_piece0 stored as bytes in memory (estimated size 1914.0 B, free 62.7 KB)
19/03/14 09:26:35 INFO storage.BlockManagerInfo: Added broadcast_9_piece0 in memory on localhost:37759 (size: 1914.0 B, free: 522.0 MB)
19/03/14 09:26:35 INFO spark.SparkContext: Created broadcast 9 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 12 (MapPartitionsRDD[13] at groupBy at SingleReadBucket.scala:34)
19/03/14 09:26:35 INFO scheduler.TaskSchedulerImpl: Adding task set 12.0 with 4 tasks
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 12.0 (TID 24, localhost, partition 0,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 12.0 (TID 25, localhost, partition 1,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 12.0 (TID 26, localhost, partition 2,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 12.0 (TID 27, localhost, partition 3,PROCESS_LOCAL, 2144 bytes)
19/03/14 09:26:35 INFO executor.Executor: Running task 0.0 in stage 12.0 (TID 24)
19/03/14 09:26:35 INFO executor.Executor: Running task 2.0 in stage 12.0 (TID 26)
19/03/14 09:26:35 INFO executor.Executor: Running task 3.0 in stage 12.0 (TID 27)
19/03/14 09:26:35 INFO executor.Executor: Running task 1.0 in stage 12.0 (TID 25)
19/03/14 09:26:35 INFO executor.Executor: Finished task 2.0 in stage 12.0 (TID 26). 1090 bytes result sent to driver
19/03/14 09:26:35 INFO executor.Executor: Finished task 0.0 in stage 12.0 (TID 24). 1090 bytes result sent to driver
19/03/14 09:26:35 INFO executor.Executor: Finished task 1.0 in stage 12.0 (TID 25). 1090 bytes result sent to driver
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 12.0 (TID 26) in 8 ms on localhost (1/4)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 12.0 (TID 24) in 10 ms on localhost (2/4)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 12.0 (TID 25) in 10 ms on localhost (3/4)
19/03/14 09:26:35 INFO executor.Executor: Finished task 3.0 in stage 12.0 (TID 27). 1090 bytes result sent to driver
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 12.0 (TID 27) in 11 ms on localhost (4/4)
19/03/14 09:26:35 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 12.0, whose tasks have all completed, from pool 
19/03/14 09:26:35 INFO scheduler.DAGScheduler: ShuffleMapStage 12 (groupBy at SingleReadBucket.scala:34) finished in 0.016 s
19/03/14 09:26:35 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:35 INFO scheduler.DAGScheduler: running: Set()
19/03/14 09:26:35 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 13)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Submitting ResultStage 13 (MapPartitionsRDD[15] at map at SingleReadBucket.scala:35), which has no missing parents
19/03/14 09:26:35 INFO storage.MemoryStore: Block broadcast_10 stored as values in memory (estimated size 4.6 KB, free 67.3 KB)
19/03/14 09:26:35 INFO storage.MemoryStore: Block broadcast_10_piece0 stored as bytes in memory (estimated size 2.3 KB, free 69.6 KB)
19/03/14 09:26:35 INFO storage.BlockManagerInfo: Added broadcast_10_piece0 in memory on localhost:37759 (size: 2.3 KB, free: 522.0 MB)
19/03/14 09:26:35 INFO spark.SparkContext: Created broadcast 10 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Submitting 1 missing tasks from ResultStage 13 (MapPartitionsRDD[15] at map at SingleReadBucket.scala:35)
19/03/14 09:26:35 INFO scheduler.TaskSchedulerImpl: Adding task set 13.0 with 1 tasks
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 13.0 (TID 28, localhost, partition 0,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:35 INFO executor.Executor: Running task 0.0 in stage 13.0 (TID 28)
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:35 INFO executor.Executor: Finished task 0.0 in stage 13.0 (TID 28). 1171 bytes result sent to driver
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 13.0 (TID 28) in 6 ms on localhost (1/1)
19/03/14 09:26:35 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 13.0, whose tasks have all completed, from pool 
19/03/14 09:26:35 INFO scheduler.DAGScheduler: ResultStage 13 (first at ComparisonsSuite.scala:40) finished in 0.006 s
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Job 6 finished: first at ComparisonsSuite.scala:40, took 0.032086 s
19/03/14 09:26:35 INFO spark.SparkContext: Starting job: first at ComparisonsSuite.scala:40
19/03/14 09:26:35 INFO spark.MapOutputTrackerMaster: Size of output statuses for shuffle 3 is 158 bytes
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Got job 7 (first at ComparisonsSuite.scala:40) with 3 output partitions
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Final stage: ResultStage 15 (first at ComparisonsSuite.scala:40)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 14)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Missing parents: List()
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Submitting ResultStage 15 (MapPartitionsRDD[15] at map at SingleReadBucket.scala:35), which has no missing parents
19/03/14 09:26:35 INFO storage.MemoryStore: Block broadcast_11 stored as values in memory (estimated size 4.6 KB, free 74.2 KB)
19/03/14 09:26:35 INFO storage.MemoryStore: Block broadcast_11_piece0 stored as bytes in memory (estimated size 2.3 KB, free 76.5 KB)
19/03/14 09:26:35 INFO storage.BlockManagerInfo: Added broadcast_11_piece0 in memory on localhost:37759 (size: 2.3 KB, free: 522.0 MB)
19/03/14 09:26:35 INFO spark.SparkContext: Created broadcast 11 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Submitting 3 missing tasks from ResultStage 15 (MapPartitionsRDD[15] at map at SingleReadBucket.scala:35)
19/03/14 09:26:35 INFO scheduler.TaskSchedulerImpl: Adding task set 15.0 with 3 tasks
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 15.0 (TID 29, localhost, partition 1,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 15.0 (TID 30, localhost, partition 2,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 15.0 (TID 31, localhost, partition 3,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:35 INFO executor.Executor: Running task 0.0 in stage 15.0 (TID 29)
19/03/14 09:26:35 INFO executor.Executor: Running task 2.0 in stage 15.0 (TID 31)
19/03/14 09:26:35 INFO executor.Executor: Running task 1.0 in stage 15.0 (TID 30)
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:35 INFO executor.Executor: Finished task 0.0 in stage 15.0 (TID 29). 1171 bytes result sent to driver
19/03/14 09:26:35 INFO executor.Executor: Finished task 2.0 in stage 15.0 (TID 31). 1171 bytes result sent to driver
19/03/14 09:26:35 INFO executor.Executor: Finished task 1.0 in stage 15.0 (TID 30). 1306 bytes result sent to driver
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 15.0 (TID 29) in 8 ms on localhost (1/3)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 15.0 (TID 31) in 7 ms on localhost (2/3)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 15.0 (TID 30) in 8 ms on localhost (3/3)
19/03/14 09:26:35 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 15.0, whose tasks have all completed, from pool 
19/03/14 09:26:35 INFO scheduler.DAGScheduler: ResultStage 15 (first at ComparisonsSuite.scala:40) finished in 0.008 s
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Job 7 finished: first at ComparisonsSuite.scala:40, took 0.014813 s
19/03/14 09:26:35 INFO spark.SparkContext: Starting job: first at ComparisonsSuite.scala:40
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Registering RDD 17 (groupBy at SingleReadBucket.scala:34)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Got job 8 (first at ComparisonsSuite.scala:40) with 1 output partitions
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Final stage: ResultStage 17 (first at ComparisonsSuite.scala:40)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 16)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Missing parents: List(ShuffleMapStage 16)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 16 (MapPartitionsRDD[17] at groupBy at SingleReadBucket.scala:34), which has no missing parents
19/03/14 09:26:35 INFO storage.MemoryStore: Block broadcast_12 stored as values in memory (estimated size 3.5 KB, free 80.0 KB)
19/03/14 09:26:35 INFO storage.MemoryStore: Block broadcast_12_piece0 stored as bytes in memory (estimated size 1913.0 B, free 81.9 KB)
19/03/14 09:26:35 INFO storage.BlockManagerInfo: Added broadcast_12_piece0 in memory on localhost:37759 (size: 1913.0 B, free: 522.0 MB)
19/03/14 09:26:35 INFO spark.SparkContext: Created broadcast 12 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 16 (MapPartitionsRDD[17] at groupBy at SingleReadBucket.scala:34)
19/03/14 09:26:35 INFO scheduler.TaskSchedulerImpl: Adding task set 16.0 with 4 tasks
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 16.0 (TID 32, localhost, partition 0,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 16.0 (TID 33, localhost, partition 1,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 16.0 (TID 34, localhost, partition 2,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 16.0 (TID 35, localhost, partition 3,PROCESS_LOCAL, 2144 bytes)
19/03/14 09:26:35 INFO executor.Executor: Running task 0.0 in stage 16.0 (TID 32)
19/03/14 09:26:35 INFO executor.Executor: Running task 2.0 in stage 16.0 (TID 34)
19/03/14 09:26:35 INFO executor.Executor: Running task 3.0 in stage 16.0 (TID 35)
19/03/14 09:26:35 INFO executor.Executor: Running task 1.0 in stage 16.0 (TID 33)
19/03/14 09:26:35 INFO executor.Executor: Finished task 1.0 in stage 16.0 (TID 33). 1090 bytes result sent to driver
19/03/14 09:26:35 INFO executor.Executor: Finished task 2.0 in stage 16.0 (TID 34). 1090 bytes result sent to driver
19/03/14 09:26:35 INFO executor.Executor: Finished task 0.0 in stage 16.0 (TID 32). 1090 bytes result sent to driver
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 16.0 (TID 33) in 8 ms on localhost (1/4)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 16.0 (TID 34) in 9 ms on localhost (2/4)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 16.0 (TID 32) in 11 ms on localhost (3/4)
19/03/14 09:26:35 INFO executor.Executor: Finished task 3.0 in stage 16.0 (TID 35). 1090 bytes result sent to driver
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 16.0 (TID 35) in 16 ms on localhost (4/4)
19/03/14 09:26:35 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 16.0, whose tasks have all completed, from pool 
19/03/14 09:26:35 INFO scheduler.DAGScheduler: ShuffleMapStage 16 (groupBy at SingleReadBucket.scala:34) finished in 0.019 s
19/03/14 09:26:35 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:35 INFO scheduler.DAGScheduler: running: Set()
19/03/14 09:26:35 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 17)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Submitting ResultStage 17 (MapPartitionsRDD[19] at map at SingleReadBucket.scala:35), which has no missing parents
19/03/14 09:26:35 INFO storage.MemoryStore: Block broadcast_13 stored as values in memory (estimated size 4.6 KB, free 86.4 KB)
19/03/14 09:26:35 INFO storage.MemoryStore: Block broadcast_13_piece0 stored as bytes in memory (estimated size 2.3 KB, free 88.7 KB)
19/03/14 09:26:35 INFO storage.BlockManagerInfo: Added broadcast_13_piece0 in memory on localhost:37759 (size: 2.3 KB, free: 522.0 MB)
19/03/14 09:26:35 INFO spark.SparkContext: Created broadcast 13 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Submitting 1 missing tasks from ResultStage 17 (MapPartitionsRDD[19] at map at SingleReadBucket.scala:35)
19/03/14 09:26:35 INFO scheduler.TaskSchedulerImpl: Adding task set 17.0 with 1 tasks
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 17.0 (TID 36, localhost, partition 0,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:35 INFO executor.Executor: Running task 0.0 in stage 17.0 (TID 36)
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:35 INFO executor.Executor: Finished task 0.0 in stage 17.0 (TID 36). 1171 bytes result sent to driver
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 17.0 (TID 36) in 9 ms on localhost (1/1)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: ResultStage 17 (first at ComparisonsSuite.scala:40) finished in 0.009 s
19/03/14 09:26:35 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 17.0, whose tasks have all completed, from pool 
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Job 8 finished: first at ComparisonsSuite.scala:40, took 0.039835 s
19/03/14 09:26:35 INFO spark.SparkContext: Starting job: first at ComparisonsSuite.scala:40
19/03/14 09:26:35 INFO spark.MapOutputTrackerMaster: Size of output statuses for shuffle 4 is 158 bytes
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Got job 9 (first at ComparisonsSuite.scala:40) with 3 output partitions
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Final stage: ResultStage 19 (first at ComparisonsSuite.scala:40)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 18)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Missing parents: List()
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Submitting ResultStage 19 (MapPartitionsRDD[19] at map at SingleReadBucket.scala:35), which has no missing parents
19/03/14 09:26:35 INFO storage.MemoryStore: Block broadcast_14 stored as values in memory (estimated size 4.6 KB, free 93.3 KB)
19/03/14 09:26:35 INFO storage.MemoryStore: Block broadcast_14_piece0 stored as bytes in memory (estimated size 2.3 KB, free 95.6 KB)
19/03/14 09:26:35 INFO storage.BlockManagerInfo: Added broadcast_14_piece0 in memory on localhost:37759 (size: 2.3 KB, free: 522.0 MB)
19/03/14 09:26:35 INFO spark.SparkContext: Created broadcast 14 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Submitting 3 missing tasks from ResultStage 19 (MapPartitionsRDD[19] at map at SingleReadBucket.scala:35)
19/03/14 09:26:35 INFO scheduler.TaskSchedulerImpl: Adding task set 19.0 with 3 tasks
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 19.0 (TID 37, localhost, partition 1,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 19.0 (TID 38, localhost, partition 2,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 19.0 (TID 39, localhost, partition 3,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:35 INFO executor.Executor: Running task 0.0 in stage 19.0 (TID 37)
19/03/14 09:26:35 INFO executor.Executor: Running task 1.0 in stage 19.0 (TID 38)
19/03/14 09:26:35 INFO executor.Executor: Running task 2.0 in stage 19.0 (TID 39)
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:35 INFO executor.Executor: Finished task 2.0 in stage 19.0 (TID 39). 1171 bytes result sent to driver
19/03/14 09:26:35 INFO executor.Executor: Finished task 0.0 in stage 19.0 (TID 37). 1171 bytes result sent to driver
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 19.0 (TID 39) in 7 ms on localhost (1/3)
19/03/14 09:26:35 INFO executor.Executor: Finished task 1.0 in stage 19.0 (TID 38). 1306 bytes result sent to driver
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 19.0 (TID 37) in 8 ms on localhost (2/3)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 19.0 (TID 38) in 9 ms on localhost (3/3)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: ResultStage 19 (first at ComparisonsSuite.scala:40) finished in 0.010 s
19/03/14 09:26:35 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 19.0, whose tasks have all completed, from pool 
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Job 9 finished: first at ComparisonsSuite.scala:40, took 0.017069 s
19/03/14 09:26:35 INFO spark.SparkContext: Starting job: first at ComparisonsSuite.scala:40
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Registering RDD 21 (groupBy at SingleReadBucket.scala:34)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Got job 10 (first at ComparisonsSuite.scala:40) with 1 output partitions
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Final stage: ResultStage 21 (first at ComparisonsSuite.scala:40)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 20)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Missing parents: List(ShuffleMapStage 20)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 20 (MapPartitionsRDD[21] at groupBy at SingleReadBucket.scala:34), which has no missing parents
19/03/14 09:26:35 INFO storage.MemoryStore: Block broadcast_15 stored as values in memory (estimated size 3.5 KB, free 99.1 KB)
19/03/14 09:26:35 INFO storage.MemoryStore: Block broadcast_15_piece0 stored as bytes in memory (estimated size 1914.0 B, free 101.0 KB)
19/03/14 09:26:35 INFO spark.ContextCleaner: Cleaned shuffle 0
19/03/14 09:26:35 INFO storage.BlockManagerInfo: Added broadcast_15_piece0 in memory on localhost:37759 (size: 1914.0 B, free: 522.0 MB)
19/03/14 09:26:35 INFO spark.SparkContext: Created broadcast 15 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 20 (MapPartitionsRDD[21] at groupBy at SingleReadBucket.scala:34)
19/03/14 09:26:35 INFO scheduler.TaskSchedulerImpl: Adding task set 20.0 with 4 tasks
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 20.0 (TID 40, localhost, partition 0,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:35 INFO storage.BlockManagerInfo: Removed broadcast_14_piece0 on localhost:37759 in memory (size: 2.3 KB, free: 522.0 MB)
19/03/14 09:26:35 INFO spark.ContextCleaner: Cleaned accumulator 147
19/03/14 09:26:35 INFO storage.BlockManagerInfo: Removed broadcast_13_piece0 on localhost:37759 in memory (size: 2.3 KB, free: 522.0 MB)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 20.0 (TID 41, localhost, partition 1,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:35 INFO spark.ContextCleaner: Cleaned accumulator 146
19/03/14 09:26:35 INFO storage.BlockManagerInfo: Removed broadcast_12_piece0 on localhost:37759 in memory (size: 1913.0 B, free: 522.0 MB)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 20.0 (TID 42, localhost, partition 2,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:35 INFO spark.ContextCleaner: Cleaned accumulator 145
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 20.0 (TID 43, localhost, partition 3,PROCESS_LOCAL, 2144 bytes)
19/03/14 09:26:35 INFO executor.Executor: Running task 0.0 in stage 20.0 (TID 40)
19/03/14 09:26:35 INFO executor.Executor: Running task 3.0 in stage 20.0 (TID 43)
19/03/14 09:26:35 INFO executor.Executor: Running task 2.0 in stage 20.0 (TID 42)
19/03/14 09:26:35 INFO spark.ContextCleaner: Cleaned shuffle 4
19/03/14 09:26:35 INFO storage.BlockManagerInfo: Removed broadcast_11_piece0 on localhost:37759 in memory (size: 2.3 KB, free: 522.0 MB)
19/03/14 09:26:35 INFO spark.ContextCleaner: Cleaned accumulator 144
19/03/14 09:26:35 INFO executor.Executor: Running task 1.0 in stage 20.0 (TID 41)
19/03/14 09:26:35 INFO storage.BlockManagerInfo: Removed broadcast_10_piece0 on localhost:37759 in memory (size: 2.3 KB, free: 522.0 MB)
19/03/14 09:26:35 INFO spark.ContextCleaner: Cleaned accumulator 143
19/03/14 09:26:35 INFO storage.BlockManagerInfo: Removed broadcast_9_piece0 on localhost:37759 in memory (size: 1914.0 B, free: 522.0 MB)
19/03/14 09:26:35 INFO spark.ContextCleaner: Cleaned accumulator 142
19/03/14 09:26:35 INFO spark.ContextCleaner: Cleaned shuffle 3
19/03/14 09:26:35 INFO storage.BlockManagerInfo: Removed broadcast_8_piece0 on localhost:37759 in memory (size: 2.3 KB, free: 522.0 MB)
19/03/14 09:26:35 INFO executor.Executor: Finished task 2.0 in stage 20.0 (TID 42). 1090 bytes result sent to driver
19/03/14 09:26:35 INFO executor.Executor: Finished task 0.0 in stage 20.0 (TID 40). 1090 bytes result sent to driver
19/03/14 09:26:35 INFO spark.ContextCleaner: Cleaned accumulator 141
19/03/14 09:26:35 INFO storage.BlockManagerInfo: Removed broadcast_7_piece0 on localhost:37759 in memory (size: 2.3 KB, free: 522.0 MB)
19/03/14 09:26:35 INFO spark.ContextCleaner: Cleaned accumulator 140
19/03/14 09:26:35 INFO storage.BlockManagerInfo: Removed broadcast_6_piece0 on localhost:37759 in memory (size: 1915.0 B, free: 522.0 MB)
19/03/14 09:26:35 INFO spark.ContextCleaner: Cleaned accumulator 137
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 20.0 (TID 42) in 9 ms on localhost (1/4)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 20.0 (TID 40) in 12 ms on localhost (2/4)
19/03/14 09:26:35 INFO executor.Executor: Finished task 1.0 in stage 20.0 (TID 41). 1090 bytes result sent to driver
19/03/14 09:26:35 INFO storage.BlockManagerInfo: Removed broadcast_3_piece0 on localhost:37759 in memory (size: 1912.0 B, free: 522.0 MB)
19/03/14 09:26:35 INFO spark.ContextCleaner: Cleaned accumulator 136
19/03/14 09:26:35 INFO spark.ContextCleaner: Cleaned shuffle 1
19/03/14 09:26:35 INFO storage.BlockManagerInfo: Removed broadcast_2_piece0 on localhost:37759 in memory (size: 2.3 KB, free: 522.0 MB)
19/03/14 09:26:35 INFO spark.ContextCleaner: Cleaned accumulator 135
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 20.0 (TID 41) in 12 ms on localhost (3/4)
19/03/14 09:26:35 INFO storage.BlockManagerInfo: Removed broadcast_1_piece0 on localhost:37759 in memory (size: 2.3 KB, free: 522.0 MB)
19/03/14 09:26:35 INFO spark.ContextCleaner: Cleaned accumulator 134
19/03/14 09:26:35 INFO storage.BlockManagerInfo: Removed broadcast_0_piece0 on localhost:37759 in memory (size: 1915.0 B, free: 522.0 MB)
19/03/14 09:26:35 INFO spark.ContextCleaner: Cleaned accumulator 133
19/03/14 09:26:35 INFO spark.ContextCleaner: Cleaned accumulator 139
19/03/14 09:26:35 INFO spark.ContextCleaner: Cleaned shuffle 2
19/03/14 09:26:35 INFO executor.Executor: Finished task 3.0 in stage 20.0 (TID 43). 1090 bytes result sent to driver
19/03/14 09:26:35 INFO storage.BlockManagerInfo: Removed broadcast_5_piece0 on localhost:37759 in memory (size: 2.3 KB, free: 522.0 MB)
19/03/14 09:26:35 INFO spark.ContextCleaner: Cleaned accumulator 138
19/03/14 09:26:35 INFO storage.BlockManagerInfo: Removed broadcast_4_piece0 on localhost:37759 in memory (size: 2.3 KB, free: 522.0 MB)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 20.0 (TID 43) in 14 ms on localhost (4/4)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: ShuffleMapStage 20 (groupBy at SingleReadBucket.scala:34) finished in 0.019 s
19/03/14 09:26:35 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:35 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 20.0, whose tasks have all completed, from pool 
19/03/14 09:26:35 INFO scheduler.DAGScheduler: running: Set()
19/03/14 09:26:35 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 21)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Submitting ResultStage 21 (MapPartitionsRDD[23] at map at SingleReadBucket.scala:35), which has no missing parents
19/03/14 09:26:35 INFO storage.MemoryStore: Block broadcast_16 stored as values in memory (estimated size 4.6 KB, free 9.9 KB)
19/03/14 09:26:35 INFO storage.MemoryStore: Block broadcast_16_piece0 stored as bytes in memory (estimated size 2.3 KB, free 12.2 KB)
19/03/14 09:26:35 INFO storage.BlockManagerInfo: Added broadcast_16_piece0 in memory on localhost:37759 (size: 2.3 KB, free: 522.0 MB)
19/03/14 09:26:35 INFO spark.SparkContext: Created broadcast 16 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Submitting 1 missing tasks from ResultStage 21 (MapPartitionsRDD[23] at map at SingleReadBucket.scala:35)
19/03/14 09:26:35 INFO scheduler.TaskSchedulerImpl: Adding task set 21.0 with 1 tasks
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 21.0 (TID 44, localhost, partition 0,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:35 INFO executor.Executor: Running task 0.0 in stage 21.0 (TID 44)
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:35 INFO executor.Executor: Finished task 0.0 in stage 21.0 (TID 44). 1171 bytes result sent to driver
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 21.0 (TID 44) in 6 ms on localhost (1/1)
19/03/14 09:26:35 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 21.0, whose tasks have all completed, from pool 
19/03/14 09:26:35 INFO scheduler.DAGScheduler: ResultStage 21 (first at ComparisonsSuite.scala:40) finished in 0.006 s
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Job 10 finished: first at ComparisonsSuite.scala:40, took 0.045637 s
19/03/14 09:26:35 INFO spark.SparkContext: Starting job: first at ComparisonsSuite.scala:40
19/03/14 09:26:35 INFO spark.MapOutputTrackerMaster: Size of output statuses for shuffle 5 is 158 bytes
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Got job 11 (first at ComparisonsSuite.scala:40) with 3 output partitions
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Final stage: ResultStage 23 (first at ComparisonsSuite.scala:40)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 22)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Missing parents: List()
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Submitting ResultStage 23 (MapPartitionsRDD[23] at map at SingleReadBucket.scala:35), which has no missing parents
19/03/14 09:26:35 INFO storage.MemoryStore: Block broadcast_17 stored as values in memory (estimated size 4.6 KB, free 16.8 KB)
19/03/14 09:26:35 INFO storage.MemoryStore: Block broadcast_17_piece0 stored as bytes in memory (estimated size 2.3 KB, free 19.1 KB)
19/03/14 09:26:35 INFO storage.BlockManagerInfo: Added broadcast_17_piece0 in memory on localhost:37759 (size: 2.3 KB, free: 522.0 MB)
19/03/14 09:26:35 INFO spark.SparkContext: Created broadcast 17 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Submitting 3 missing tasks from ResultStage 23 (MapPartitionsRDD[23] at map at SingleReadBucket.scala:35)
19/03/14 09:26:35 INFO scheduler.TaskSchedulerImpl: Adding task set 23.0 with 3 tasks
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 23.0 (TID 45, localhost, partition 1,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 23.0 (TID 46, localhost, partition 2,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 23.0 (TID 47, localhost, partition 3,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:35 INFO executor.Executor: Running task 2.0 in stage 23.0 (TID 47)
19/03/14 09:26:35 INFO executor.Executor: Running task 1.0 in stage 23.0 (TID 46)
19/03/14 09:26:35 INFO executor.Executor: Running task 0.0 in stage 23.0 (TID 45)
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 1 ms
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 1 ms
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:35 INFO executor.Executor: Finished task 2.0 in stage 23.0 (TID 47). 1171 bytes result sent to driver
19/03/14 09:26:35 INFO executor.Executor: Finished task 0.0 in stage 23.0 (TID 45). 1171 bytes result sent to driver
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 23.0 (TID 47) in 6 ms on localhost (1/3)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 23.0 (TID 45) in 7 ms on localhost (2/3)
19/03/14 09:26:35 INFO executor.Executor: Finished task 1.0 in stage 23.0 (TID 46). 1306 bytes result sent to driver
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 23.0 (TID 46) in 8 ms on localhost (3/3)
19/03/14 09:26:35 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 23.0, whose tasks have all completed, from pool 
19/03/14 09:26:35 INFO scheduler.DAGScheduler: ResultStage 23 (first at ComparisonsSuite.scala:40) finished in 0.010 s
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Job 11 finished: first at ComparisonsSuite.scala:40, took 0.014740 s
19/03/14 09:26:35 INFO spark.SparkContext: Starting job: first at ComparisonsSuite.scala:40
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Registering RDD 25 (groupBy at SingleReadBucket.scala:34)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Got job 12 (first at ComparisonsSuite.scala:40) with 1 output partitions
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Final stage: ResultStage 25 (first at ComparisonsSuite.scala:40)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 24)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Missing parents: List(ShuffleMapStage 24)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 24 (MapPartitionsRDD[25] at groupBy at SingleReadBucket.scala:34), which has no missing parents
19/03/14 09:26:35 INFO storage.MemoryStore: Block broadcast_18 stored as values in memory (estimated size 3.5 KB, free 22.6 KB)
19/03/14 09:26:35 INFO storage.MemoryStore: Block broadcast_18_piece0 stored as bytes in memory (estimated size 1915.0 B, free 24.5 KB)
19/03/14 09:26:35 INFO storage.BlockManagerInfo: Added broadcast_18_piece0 in memory on localhost:37759 (size: 1915.0 B, free: 522.0 MB)
19/03/14 09:26:35 INFO spark.SparkContext: Created broadcast 18 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 24 (MapPartitionsRDD[25] at groupBy at SingleReadBucket.scala:34)
19/03/14 09:26:35 INFO scheduler.TaskSchedulerImpl: Adding task set 24.0 with 4 tasks
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 24.0 (TID 48, localhost, partition 0,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 24.0 (TID 49, localhost, partition 1,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 24.0 (TID 50, localhost, partition 2,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 24.0 (TID 51, localhost, partition 3,PROCESS_LOCAL, 2144 bytes)
19/03/14 09:26:35 INFO executor.Executor: Running task 2.0 in stage 24.0 (TID 50)
19/03/14 09:26:35 INFO executor.Executor: Running task 1.0 in stage 24.0 (TID 49)
19/03/14 09:26:35 INFO executor.Executor: Running task 0.0 in stage 24.0 (TID 48)
19/03/14 09:26:35 INFO executor.Executor: Running task 3.0 in stage 24.0 (TID 51)
19/03/14 09:26:35 INFO executor.Executor: Finished task 2.0 in stage 24.0 (TID 50). 1090 bytes result sent to driver
19/03/14 09:26:35 INFO executor.Executor: Finished task 1.0 in stage 24.0 (TID 49). 1090 bytes result sent to driver
19/03/14 09:26:35 INFO executor.Executor: Finished task 0.0 in stage 24.0 (TID 48). 1090 bytes result sent to driver
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 24.0 (TID 50) in 7 ms on localhost (1/4)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 24.0 (TID 49) in 8 ms on localhost (2/4)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 24.0 (TID 48) in 10 ms on localhost (3/4)
19/03/14 09:26:35 INFO executor.Executor: Finished task 3.0 in stage 24.0 (TID 51). 1090 bytes result sent to driver
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 24.0 (TID 51) in 10 ms on localhost (4/4)
19/03/14 09:26:35 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 24.0, whose tasks have all completed, from pool 
19/03/14 09:26:35 INFO scheduler.DAGScheduler: ShuffleMapStage 24 (groupBy at SingleReadBucket.scala:34) finished in 0.015 s
19/03/14 09:26:35 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:35 INFO scheduler.DAGScheduler: running: Set()
19/03/14 09:26:35 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 25)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Submitting ResultStage 25 (MapPartitionsRDD[27] at map at SingleReadBucket.scala:35), which has no missing parents
19/03/14 09:26:35 INFO storage.MemoryStore: Block broadcast_19 stored as values in memory (estimated size 4.6 KB, free 29.0 KB)
19/03/14 09:26:35 INFO storage.MemoryStore: Block broadcast_19_piece0 stored as bytes in memory (estimated size 2.3 KB, free 31.4 KB)
19/03/14 09:26:35 INFO storage.BlockManagerInfo: Added broadcast_19_piece0 in memory on localhost:37759 (size: 2.3 KB, free: 522.0 MB)
19/03/14 09:26:35 INFO spark.SparkContext: Created broadcast 19 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Submitting 1 missing tasks from ResultStage 25 (MapPartitionsRDD[27] at map at SingleReadBucket.scala:35)
19/03/14 09:26:35 INFO scheduler.TaskSchedulerImpl: Adding task set 25.0 with 1 tasks
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 25.0 (TID 52, localhost, partition 0,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:35 INFO executor.Executor: Running task 0.0 in stage 25.0 (TID 52)
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:35 INFO executor.Executor: Finished task 0.0 in stage 25.0 (TID 52). 1171 bytes result sent to driver
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 25.0 (TID 52) in 6 ms on localhost (1/1)
19/03/14 09:26:35 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 25.0, whose tasks have all completed, from pool 
19/03/14 09:26:35 INFO scheduler.DAGScheduler: ResultStage 25 (first at ComparisonsSuite.scala:40) finished in 0.006 s
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Job 12 finished: first at ComparisonsSuite.scala:40, took 0.031722 s
19/03/14 09:26:35 INFO spark.SparkContext: Starting job: first at ComparisonsSuite.scala:40
19/03/14 09:26:35 INFO spark.MapOutputTrackerMaster: Size of output statuses for shuffle 6 is 158 bytes
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Got job 13 (first at ComparisonsSuite.scala:40) with 3 output partitions
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Final stage: ResultStage 27 (first at ComparisonsSuite.scala:40)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 26)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Missing parents: List()
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Submitting ResultStage 27 (MapPartitionsRDD[27] at map at SingleReadBucket.scala:35), which has no missing parents
19/03/14 09:26:35 INFO storage.MemoryStore: Block broadcast_20 stored as values in memory (estimated size 4.6 KB, free 35.9 KB)
19/03/14 09:26:35 INFO storage.MemoryStore: Block broadcast_20_piece0 stored as bytes in memory (estimated size 2.3 KB, free 38.2 KB)
19/03/14 09:26:35 INFO storage.BlockManagerInfo: Added broadcast_20_piece0 in memory on localhost:37759 (size: 2.3 KB, free: 522.0 MB)
19/03/14 09:26:35 INFO spark.SparkContext: Created broadcast 20 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Submitting 3 missing tasks from ResultStage 27 (MapPartitionsRDD[27] at map at SingleReadBucket.scala:35)
19/03/14 09:26:35 INFO scheduler.TaskSchedulerImpl: Adding task set 27.0 with 3 tasks
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 27.0 (TID 53, localhost, partition 1,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 27.0 (TID 54, localhost, partition 2,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 27.0 (TID 55, localhost, partition 3,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:35 INFO executor.Executor: Running task 0.0 in stage 27.0 (TID 53)
19/03/14 09:26:35 INFO executor.Executor: Running task 1.0 in stage 27.0 (TID 54)
19/03/14 09:26:35 INFO executor.Executor: Running task 2.0 in stage 27.0 (TID 55)
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:35 INFO executor.Executor: Finished task 0.0 in stage 27.0 (TID 53). 1171 bytes result sent to driver
19/03/14 09:26:35 INFO executor.Executor: Finished task 2.0 in stage 27.0 (TID 55). 1171 bytes result sent to driver
19/03/14 09:26:35 INFO executor.Executor: Finished task 1.0 in stage 27.0 (TID 54). 1306 bytes result sent to driver
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 27.0 (TID 53) in 7 ms on localhost (1/3)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 27.0 (TID 55) in 7 ms on localhost (2/3)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 27.0 (TID 54) in 7 ms on localhost (3/3)
19/03/14 09:26:35 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 27.0, whose tasks have all completed, from pool 
19/03/14 09:26:35 INFO scheduler.DAGScheduler: ResultStage 27 (first at ComparisonsSuite.scala:40) finished in 0.009 s
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Job 13 finished: first at ComparisonsSuite.scala:40, took 0.013659 s
19/03/14 09:26:35 INFO spark.SparkContext: Starting job: first at ComparisonsSuite.scala:40
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Registering RDD 29 (groupBy at SingleReadBucket.scala:34)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Got job 14 (first at ComparisonsSuite.scala:40) with 1 output partitions
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Final stage: ResultStage 29 (first at ComparisonsSuite.scala:40)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 28)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Missing parents: List(ShuffleMapStage 28)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 28 (MapPartitionsRDD[29] at groupBy at SingleReadBucket.scala:34), which has no missing parents
19/03/14 09:26:35 INFO storage.MemoryStore: Block broadcast_21 stored as values in memory (estimated size 3.5 KB, free 41.7 KB)
19/03/14 09:26:35 INFO storage.MemoryStore: Block broadcast_21_piece0 stored as bytes in memory (estimated size 1913.0 B, free 43.6 KB)
19/03/14 09:26:35 INFO storage.BlockManagerInfo: Added broadcast_21_piece0 in memory on localhost:37759 (size: 1913.0 B, free: 522.0 MB)
19/03/14 09:26:35 INFO spark.SparkContext: Created broadcast 21 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 28 (MapPartitionsRDD[29] at groupBy at SingleReadBucket.scala:34)
19/03/14 09:26:35 INFO scheduler.TaskSchedulerImpl: Adding task set 28.0 with 4 tasks
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 28.0 (TID 56, localhost, partition 0,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 28.0 (TID 57, localhost, partition 1,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 28.0 (TID 58, localhost, partition 2,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 28.0 (TID 59, localhost, partition 3,PROCESS_LOCAL, 2144 bytes)
19/03/14 09:26:35 INFO executor.Executor: Running task 2.0 in stage 28.0 (TID 58)
19/03/14 09:26:35 INFO executor.Executor: Running task 1.0 in stage 28.0 (TID 57)
19/03/14 09:26:35 INFO executor.Executor: Running task 0.0 in stage 28.0 (TID 56)
19/03/14 09:26:35 INFO executor.Executor: Running task 3.0 in stage 28.0 (TID 59)
19/03/14 09:26:35 INFO executor.Executor: Finished task 2.0 in stage 28.0 (TID 58). 1090 bytes result sent to driver
19/03/14 09:26:35 INFO executor.Executor: Finished task 0.0 in stage 28.0 (TID 56). 1090 bytes result sent to driver
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 28.0 (TID 58) in 6 ms on localhost (1/4)
19/03/14 09:26:35 INFO executor.Executor: Finished task 1.0 in stage 28.0 (TID 57). 1090 bytes result sent to driver
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 28.0 (TID 57) in 9 ms on localhost (2/4)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 28.0 (TID 56) in 12 ms on localhost (3/4)
19/03/14 09:26:35 INFO executor.Executor: Finished task 3.0 in stage 28.0 (TID 59). 1090 bytes result sent to driver
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 28.0 (TID 59) in 10 ms on localhost (4/4)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: ShuffleMapStage 28 (groupBy at SingleReadBucket.scala:34) finished in 0.014 s
19/03/14 09:26:35 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 28.0, whose tasks have all completed, from pool 
19/03/14 09:26:35 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:35 INFO scheduler.DAGScheduler: running: Set()
19/03/14 09:26:35 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 29)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Submitting ResultStage 29 (MapPartitionsRDD[31] at map at SingleReadBucket.scala:35), which has no missing parents
19/03/14 09:26:35 INFO storage.MemoryStore: Block broadcast_22 stored as values in memory (estimated size 4.6 KB, free 48.2 KB)
19/03/14 09:26:35 INFO storage.MemoryStore: Block broadcast_22_piece0 stored as bytes in memory (estimated size 2.3 KB, free 50.5 KB)
19/03/14 09:26:35 INFO storage.BlockManagerInfo: Added broadcast_22_piece0 in memory on localhost:37759 (size: 2.3 KB, free: 522.0 MB)
19/03/14 09:26:35 INFO spark.SparkContext: Created broadcast 22 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Submitting 1 missing tasks from ResultStage 29 (MapPartitionsRDD[31] at map at SingleReadBucket.scala:35)
19/03/14 09:26:35 INFO scheduler.TaskSchedulerImpl: Adding task set 29.0 with 1 tasks
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 29.0 (TID 60, localhost, partition 0,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:35 INFO executor.Executor: Running task 0.0 in stage 29.0 (TID 60)
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:35 INFO executor.Executor: Finished task 0.0 in stage 29.0 (TID 60). 1171 bytes result sent to driver
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 29.0 (TID 60) in 9 ms on localhost (1/1)
19/03/14 09:26:35 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 29.0, whose tasks have all completed, from pool 
19/03/14 09:26:35 INFO scheduler.DAGScheduler: ResultStage 29 (first at ComparisonsSuite.scala:40) finished in 0.009 s
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Job 14 finished: first at ComparisonsSuite.scala:40, took 0.031693 s
19/03/14 09:26:35 INFO spark.SparkContext: Starting job: first at ComparisonsSuite.scala:40
19/03/14 09:26:35 INFO spark.MapOutputTrackerMaster: Size of output statuses for shuffle 7 is 158 bytes
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Got job 15 (first at ComparisonsSuite.scala:40) with 3 output partitions
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Final stage: ResultStage 31 (first at ComparisonsSuite.scala:40)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 30)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Missing parents: List()
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Submitting ResultStage 31 (MapPartitionsRDD[31] at map at SingleReadBucket.scala:35), which has no missing parents
19/03/14 09:26:35 INFO storage.MemoryStore: Block broadcast_23 stored as values in memory (estimated size 4.6 KB, free 55.0 KB)
19/03/14 09:26:35 INFO storage.MemoryStore: Block broadcast_23_piece0 stored as bytes in memory (estimated size 2.3 KB, free 57.4 KB)
19/03/14 09:26:35 INFO storage.BlockManagerInfo: Added broadcast_23_piece0 in memory on localhost:37759 (size: 2.3 KB, free: 522.0 MB)
19/03/14 09:26:35 INFO spark.SparkContext: Created broadcast 23 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Submitting 3 missing tasks from ResultStage 31 (MapPartitionsRDD[31] at map at SingleReadBucket.scala:35)
19/03/14 09:26:35 INFO scheduler.TaskSchedulerImpl: Adding task set 31.0 with 3 tasks
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 31.0 (TID 61, localhost, partition 1,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 31.0 (TID 62, localhost, partition 2,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 31.0 (TID 63, localhost, partition 3,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:35 INFO executor.Executor: Running task 1.0 in stage 31.0 (TID 62)
19/03/14 09:26:35 INFO executor.Executor: Running task 2.0 in stage 31.0 (TID 63)
19/03/14 09:26:35 INFO executor.Executor: Running task 0.0 in stage 31.0 (TID 61)
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 1 ms
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:35 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:35 INFO executor.Executor: Finished task 1.0 in stage 31.0 (TID 62). 1306 bytes result sent to driver
19/03/14 09:26:35 INFO executor.Executor: Finished task 2.0 in stage 31.0 (TID 63). 1171 bytes result sent to driver
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 31.0 (TID 62) in 6 ms on localhost (1/3)
19/03/14 09:26:35 INFO executor.Executor: Finished task 0.0 in stage 31.0 (TID 61). 1171 bytes result sent to driver
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 31.0 (TID 63) in 7 ms on localhost (2/3)
19/03/14 09:26:35 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 31.0 (TID 61) in 8 ms on localhost (3/3)
19/03/14 09:26:35 INFO scheduler.DAGScheduler: ResultStage 31 (first at ComparisonsSuite.scala:40) finished in 0.009 s
19/03/14 09:26:35 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 31.0, whose tasks have all completed, from pool 
19/03/14 09:26:35 INFO scheduler.DAGScheduler: Job 15 finished: first at ComparisonsSuite.scala:40, took 0.013814 s
19/03/14 09:26:35 INFO spark.MapOutputTrackerMasterEndpoint: MapOutputTrackerMasterEndpoint stopped!
19/03/14 09:26:35 INFO storage.MemoryStore: MemoryStore cleared
19/03/14 09:26:35 INFO storage.BlockManager: BlockManager stopped
19/03/14 09:26:35 INFO storage.BlockManagerMaster: BlockManagerMaster stopped
19/03/14 09:26:35 INFO scheduler.OutputCommitCoordinator$OutputCommitCoordinatorEndpoint: OutputCommitCoordinator stopped!
19/03/14 09:26:35 INFO remote.RemoteActorRefProvider$RemotingTerminator: Shutting down remote daemon.
19/03/14 09:26:35 INFO remote.RemoteActorRefProvider$RemotingTerminator: Remote daemon shut down; proceeding with flushing remote transports.
19/03/14 09:26:36 INFO spark.SparkContext: Successfully stopped SparkContext
19/03/14 09:26:36 INFO spark.SparkContext: Running Spark version 1.6.1
19/03/14 09:26:36 INFO remote.RemoteActorRefProvider$RemotingTerminator: Remoting shut down.
19/03/14 09:26:36 INFO spark.SecurityManager: Changing view acls to: jenkins
19/03/14 09:26:36 INFO spark.SecurityManager: Changing modify acls to: jenkins
19/03/14 09:26:36 INFO spark.SecurityManager: SecurityManager: authentication disabled; ui acls disabled; users with view permissions: Set(jenkins); users with modify permissions: Set(jenkins)
19/03/14 09:26:36 INFO util.Utils: Successfully started service 'sparkDriver' on port 53485.
19/03/14 09:26:36 INFO slf4j.Slf4jLogger: Slf4jLogger started
19/03/14 09:26:36 INFO Remoting: Starting remoting
19/03/14 09:26:36 INFO Remoting: Remoting started; listening on addresses :[akka.tcp://sparkDriverActorSystem@localhost:53486]
19/03/14 09:26:36 INFO util.Utils: Successfully started service 'sparkDriverActorSystem' on port 53486.
19/03/14 09:26:36 INFO spark.SparkEnv: Registering MapOutputTracker
19/03/14 09:26:36 INFO spark.SparkEnv: Registering BlockManagerMaster
19/03/14 09:26:36 INFO storage.DiskBlockManager: Created local directory at /tmp/blockmgr-a4c9e605-af9e-423c-96f3-1c95f9c01b8b
19/03/14 09:26:36 INFO storage.MemoryStore: MemoryStore started with capacity 522.4 MB
19/03/14 09:26:36 INFO spark.SparkEnv: Registering OutputCommitCoordinator
19/03/14 09:26:36 INFO executor.Executor: Starting executor ID driver on host localhost
19/03/14 09:26:36 INFO util.Utils: Successfully started service 'org.apache.spark.network.netty.NettyBlockTransferService' on port 36419.
19/03/14 09:26:36 INFO netty.NettyBlockTransferService: Server created on 36419
19/03/14 09:26:36 INFO storage.BlockManagerMaster: Trying to register BlockManager
19/03/14 09:26:36 INFO storage.BlockManagerMasterEndpoint: Registering block manager localhost:36419 with 522.4 MB RAM, BlockManagerId(driver, localhost, 36419)
19/03/14 09:26:36 INFO storage.BlockManagerMaster: Registered BlockManager
19/03/14 09:26:36 INFO spark.MapOutputTrackerMasterEndpoint: MapOutputTrackerMasterEndpoint stopped!
19/03/14 09:26:36 INFO storage.MemoryStore: MemoryStore cleared
19/03/14 09:26:36 INFO storage.BlockManager: BlockManager stopped
19/03/14 09:26:36 INFO storage.BlockManagerMaster: BlockManagerMaster stopped
19/03/14 09:26:36 INFO scheduler.OutputCommitCoordinator$OutputCommitCoordinatorEndpoint: OutputCommitCoordinator stopped!
19/03/14 09:26:36 INFO remote.RemoteActorRefProvider$RemotingTerminator: Shutting down remote daemon.
19/03/14 09:26:36 INFO remote.RemoteActorRefProvider$RemotingTerminator: Remote daemon shut down; proceeding with flushing remote transports.
19/03/14 09:26:36 INFO spark.SparkContext: Successfully stopped SparkContext
- Test map quality scores
19/03/14 09:26:36 INFO spark.SparkContext: Running Spark version 1.6.1
19/03/14 09:26:36 INFO remote.RemoteActorRefProvider$RemotingTerminator: Remoting shut down.
19/03/14 09:26:36 INFO spark.SecurityManager: Changing view acls to: jenkins
19/03/14 09:26:36 INFO spark.SecurityManager: Changing modify acls to: jenkins
19/03/14 09:26:36 INFO spark.SecurityManager: SecurityManager: authentication disabled; ui acls disabled; users with view permissions: Set(jenkins); users with modify permissions: Set(jenkins)
19/03/14 09:26:36 INFO util.Utils: Successfully started service 'sparkDriver' on port 53051.
19/03/14 09:26:36 INFO slf4j.Slf4jLogger: Slf4jLogger started
19/03/14 09:26:36 INFO Remoting: Starting remoting
19/03/14 09:26:36 INFO Remoting: Remoting started; listening on addresses :[akka.tcp://sparkDriverActorSystem@localhost:53052]
19/03/14 09:26:36 INFO util.Utils: Successfully started service 'sparkDriverActorSystem' on port 53052.
19/03/14 09:26:36 INFO spark.SparkEnv: Registering MapOutputTracker
19/03/14 09:26:36 INFO spark.SparkEnv: Registering BlockManagerMaster
19/03/14 09:26:36 INFO storage.DiskBlockManager: Created local directory at /tmp/blockmgr-e3640b1b-7e46-4409-be37-83c44b238197
19/03/14 09:26:36 INFO storage.MemoryStore: MemoryStore started with capacity 522.4 MB
19/03/14 09:26:36 INFO spark.SparkEnv: Registering OutputCommitCoordinator
19/03/14 09:26:36 INFO executor.Executor: Starting executor ID driver on host localhost
19/03/14 09:26:36 INFO util.Utils: Successfully started service 'org.apache.spark.network.netty.NettyBlockTransferService' on port 33915.
19/03/14 09:26:36 INFO netty.NettyBlockTransferService: Server created on 33915
19/03/14 09:26:36 INFO storage.BlockManagerMaster: Trying to register BlockManager
19/03/14 09:26:36 INFO storage.BlockManagerMasterEndpoint: Registering block manager localhost:33915 with 522.4 MB RAM, BlockManagerId(driver, localhost, 33915)
19/03/14 09:26:36 INFO storage.BlockManagerMaster: Registered BlockManager
19/03/14 09:26:36 INFO spark.SparkContext: Starting job: first at ComparisonsSuite.scala:40
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Registering RDD 1 (groupBy at SingleReadBucket.scala:34)
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Got job 0 (first at ComparisonsSuite.scala:40) with 1 output partitions
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Final stage: ResultStage 1 (first at ComparisonsSuite.scala:40)
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 0)
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Missing parents: List(ShuffleMapStage 0)
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 0 (MapPartitionsRDD[1] at groupBy at SingleReadBucket.scala:34), which has no missing parents
19/03/14 09:26:36 INFO storage.MemoryStore: Block broadcast_0 stored as values in memory (estimated size 3.5 KB, free 3.5 KB)
19/03/14 09:26:36 INFO storage.MemoryStore: Block broadcast_0_piece0 stored as bytes in memory (estimated size 1915.0 B, free 5.4 KB)
19/03/14 09:26:36 INFO storage.BlockManagerInfo: Added broadcast_0_piece0 in memory on localhost:33915 (size: 1915.0 B, free: 522.4 MB)
19/03/14 09:26:36 INFO spark.SparkContext: Created broadcast 0 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 0 (MapPartitionsRDD[1] at groupBy at SingleReadBucket.scala:34)
19/03/14 09:26:36 INFO scheduler.TaskSchedulerImpl: Adding task set 0.0 with 4 tasks
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 0.0 (TID 0, localhost, partition 0,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 0.0 (TID 1, localhost, partition 1,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 0.0 (TID 2, localhost, partition 2,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 0.0 (TID 3, localhost, partition 3,PROCESS_LOCAL, 2144 bytes)
19/03/14 09:26:36 INFO executor.Executor: Running task 0.0 in stage 0.0 (TID 0)
19/03/14 09:26:36 INFO executor.Executor: Running task 1.0 in stage 0.0 (TID 1)
19/03/14 09:26:36 INFO executor.Executor: Running task 2.0 in stage 0.0 (TID 2)
19/03/14 09:26:36 INFO executor.Executor: Running task 3.0 in stage 0.0 (TID 3)
19/03/14 09:26:36 INFO executor.Executor: Finished task 0.0 in stage 0.0 (TID 0). 1090 bytes result sent to driver
19/03/14 09:26:36 INFO executor.Executor: Finished task 1.0 in stage 0.0 (TID 1). 1090 bytes result sent to driver
19/03/14 09:26:36 INFO executor.Executor: Finished task 2.0 in stage 0.0 (TID 2). 1090 bytes result sent to driver
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 0.0 (TID 0) in 13 ms on localhost (1/4)
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 0.0 (TID 1) in 13 ms on localhost (2/4)
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 0.0 (TID 2) in 11 ms on localhost (3/4)
19/03/14 09:26:36 INFO executor.Executor: Finished task 3.0 in stage 0.0 (TID 3). 1090 bytes result sent to driver
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 0.0 (TID 3) in 15 ms on localhost (4/4)
19/03/14 09:26:36 INFO scheduler.DAGScheduler: ShuffleMapStage 0 (groupBy at SingleReadBucket.scala:34) finished in 0.020 s
19/03/14 09:26:36 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 0.0, whose tasks have all completed, from pool 
19/03/14 09:26:36 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:36 INFO scheduler.DAGScheduler: running: Set()
19/03/14 09:26:36 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 1)
19/03/14 09:26:36 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Submitting ResultStage 1 (MapPartitionsRDD[3] at map at SingleReadBucket.scala:35), which has no missing parents
19/03/14 09:26:36 INFO storage.MemoryStore: Block broadcast_1 stored as values in memory (estimated size 4.6 KB, free 9.9 KB)
19/03/14 09:26:36 INFO storage.MemoryStore: Block broadcast_1_piece0 stored as bytes in memory (estimated size 2.3 KB, free 12.2 KB)
19/03/14 09:26:36 INFO storage.BlockManagerInfo: Added broadcast_1_piece0 in memory on localhost:33915 (size: 2.3 KB, free: 522.4 MB)
19/03/14 09:26:36 INFO spark.SparkContext: Created broadcast 1 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Submitting 1 missing tasks from ResultStage 1 (MapPartitionsRDD[3] at map at SingleReadBucket.scala:35)
19/03/14 09:26:36 INFO scheduler.TaskSchedulerImpl: Adding task set 1.0 with 1 tasks
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 1.0 (TID 4, localhost, partition 0,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:36 INFO executor.Executor: Running task 0.0 in stage 1.0 (TID 4)
19/03/14 09:26:36 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:36 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:36 INFO executor.Executor: Finished task 0.0 in stage 1.0 (TID 4). 1171 bytes result sent to driver
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 1.0 (TID 4) in 6 ms on localhost (1/1)
19/03/14 09:26:36 INFO scheduler.DAGScheduler: ResultStage 1 (first at ComparisonsSuite.scala:40) finished in 0.007 s
19/03/14 09:26:36 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 1.0, whose tasks have all completed, from pool 
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Job 0 finished: first at ComparisonsSuite.scala:40, took 0.037213 s
19/03/14 09:26:36 INFO spark.SparkContext: Starting job: first at ComparisonsSuite.scala:40
19/03/14 09:26:36 INFO spark.MapOutputTrackerMaster: Size of output statuses for shuffle 0 is 157 bytes
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Got job 1 (first at ComparisonsSuite.scala:40) with 3 output partitions
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Final stage: ResultStage 3 (first at ComparisonsSuite.scala:40)
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 2)
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Missing parents: List()
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Submitting ResultStage 3 (MapPartitionsRDD[3] at map at SingleReadBucket.scala:35), which has no missing parents
19/03/14 09:26:36 INFO storage.MemoryStore: Block broadcast_2 stored as values in memory (estimated size 4.6 KB, free 16.8 KB)
19/03/14 09:26:36 INFO storage.MemoryStore: Block broadcast_2_piece0 stored as bytes in memory (estimated size 2.3 KB, free 19.1 KB)
19/03/14 09:26:36 INFO storage.BlockManagerInfo: Added broadcast_2_piece0 in memory on localhost:33915 (size: 2.3 KB, free: 522.4 MB)
19/03/14 09:26:36 INFO spark.SparkContext: Created broadcast 2 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Submitting 3 missing tasks from ResultStage 3 (MapPartitionsRDD[3] at map at SingleReadBucket.scala:35)
19/03/14 09:26:36 INFO scheduler.TaskSchedulerImpl: Adding task set 3.0 with 3 tasks
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 3.0 (TID 5, localhost, partition 1,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 3.0 (TID 6, localhost, partition 2,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 3.0 (TID 7, localhost, partition 3,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:36 INFO executor.Executor: Running task 2.0 in stage 3.0 (TID 7)
19/03/14 09:26:36 INFO executor.Executor: Running task 1.0 in stage 3.0 (TID 6)
19/03/14 09:26:36 INFO executor.Executor: Running task 0.0 in stage 3.0 (TID 5)
19/03/14 09:26:36 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:36 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:36 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:36 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:36 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:36 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:36 INFO executor.Executor: Finished task 0.0 in stage 3.0 (TID 5). 1171 bytes result sent to driver
19/03/14 09:26:36 INFO executor.Executor: Finished task 2.0 in stage 3.0 (TID 7). 1171 bytes result sent to driver
19/03/14 09:26:36 INFO executor.Executor: Finished task 1.0 in stage 3.0 (TID 6). 1306 bytes result sent to driver
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 3.0 (TID 5) in 7 ms on localhost (1/3)
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 3.0 (TID 7) in 7 ms on localhost (2/3)
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 3.0 (TID 6) in 8 ms on localhost (3/3)
19/03/14 09:26:36 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 3.0, whose tasks have all completed, from pool 
19/03/14 09:26:36 INFO scheduler.DAGScheduler: ResultStage 3 (first at ComparisonsSuite.scala:40) finished in 0.009 s
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Job 1 finished: first at ComparisonsSuite.scala:40, took 0.014799 s
19/03/14 09:26:36 INFO spark.SparkContext: Starting job: first at ComparisonsSuite.scala:40
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Registering RDD 5 (groupBy at SingleReadBucket.scala:34)
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Got job 2 (first at ComparisonsSuite.scala:40) with 1 output partitions
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Final stage: ResultStage 5 (first at ComparisonsSuite.scala:40)
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 4)
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Missing parents: List(ShuffleMapStage 4)
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 4 (MapPartitionsRDD[5] at groupBy at SingleReadBucket.scala:34), which has no missing parents
19/03/14 09:26:36 INFO storage.MemoryStore: Block broadcast_3 stored as values in memory (estimated size 3.5 KB, free 22.6 KB)
19/03/14 09:26:36 INFO storage.MemoryStore: Block broadcast_3_piece0 stored as bytes in memory (estimated size 1912.0 B, free 24.5 KB)
19/03/14 09:26:36 INFO storage.BlockManagerInfo: Added broadcast_3_piece0 in memory on localhost:33915 (size: 1912.0 B, free: 522.4 MB)
19/03/14 09:26:36 INFO spark.SparkContext: Created broadcast 3 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 4 (MapPartitionsRDD[5] at groupBy at SingleReadBucket.scala:34)
19/03/14 09:26:36 INFO scheduler.TaskSchedulerImpl: Adding task set 4.0 with 4 tasks
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 4.0 (TID 8, localhost, partition 0,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 4.0 (TID 9, localhost, partition 1,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 4.0 (TID 10, localhost, partition 2,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 4.0 (TID 11, localhost, partition 3,PROCESS_LOCAL, 2144 bytes)
19/03/14 09:26:36 INFO executor.Executor: Running task 1.0 in stage 4.0 (TID 9)
19/03/14 09:26:36 INFO executor.Executor: Running task 0.0 in stage 4.0 (TID 8)
19/03/14 09:26:36 INFO executor.Executor: Running task 2.0 in stage 4.0 (TID 10)
19/03/14 09:26:36 INFO executor.Executor: Running task 3.0 in stage 4.0 (TID 11)
19/03/14 09:26:36 INFO executor.Executor: Finished task 0.0 in stage 4.0 (TID 8). 1090 bytes result sent to driver
19/03/14 09:26:36 INFO executor.Executor: Finished task 1.0 in stage 4.0 (TID 9). 1090 bytes result sent to driver
19/03/14 09:26:36 INFO executor.Executor: Finished task 2.0 in stage 4.0 (TID 10). 1090 bytes result sent to driver
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 4.0 (TID 8) in 12 ms on localhost (1/4)
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 4.0 (TID 9) in 10 ms on localhost (2/4)
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 4.0 (TID 10) in 11 ms on localhost (3/4)
19/03/14 09:26:36 INFO executor.Executor: Finished task 3.0 in stage 4.0 (TID 11). 1090 bytes result sent to driver
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 4.0 (TID 11) in 15 ms on localhost (4/4)
19/03/14 09:26:36 INFO scheduler.DAGScheduler: ShuffleMapStage 4 (groupBy at SingleReadBucket.scala:34) finished in 0.021 s
19/03/14 09:26:36 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 4.0, whose tasks have all completed, from pool 
19/03/14 09:26:36 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:36 INFO scheduler.DAGScheduler: running: Set()
19/03/14 09:26:36 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 5)
19/03/14 09:26:36 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Submitting ResultStage 5 (MapPartitionsRDD[7] at map at SingleReadBucket.scala:35), which has no missing parents
19/03/14 09:26:36 INFO storage.MemoryStore: Block broadcast_4 stored as values in memory (estimated size 4.6 KB, free 29.0 KB)
19/03/14 09:26:36 INFO storage.MemoryStore: Block broadcast_4_piece0 stored as bytes in memory (estimated size 2.3 KB, free 31.4 KB)
19/03/14 09:26:36 INFO storage.BlockManagerInfo: Added broadcast_4_piece0 in memory on localhost:33915 (size: 2.3 KB, free: 522.4 MB)
19/03/14 09:26:36 INFO spark.SparkContext: Created broadcast 4 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Submitting 1 missing tasks from ResultStage 5 (MapPartitionsRDD[7] at map at SingleReadBucket.scala:35)
19/03/14 09:26:36 INFO scheduler.TaskSchedulerImpl: Adding task set 5.0 with 1 tasks
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 5.0 (TID 12, localhost, partition 0,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:36 INFO executor.Executor: Running task 0.0 in stage 5.0 (TID 12)
19/03/14 09:26:36 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:36 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:36 INFO executor.Executor: Finished task 0.0 in stage 5.0 (TID 12). 1171 bytes result sent to driver
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 5.0 (TID 12) in 7 ms on localhost (1/1)
19/03/14 09:26:36 INFO scheduler.DAGScheduler: ResultStage 5 (first at ComparisonsSuite.scala:40) finished in 0.007 s
19/03/14 09:26:36 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 5.0, whose tasks have all completed, from pool 
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Job 2 finished: first at ComparisonsSuite.scala:40, took 0.038894 s
19/03/14 09:26:36 INFO spark.SparkContext: Starting job: first at ComparisonsSuite.scala:40
19/03/14 09:26:36 INFO spark.MapOutputTrackerMaster: Size of output statuses for shuffle 1 is 157 bytes
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Got job 3 (first at ComparisonsSuite.scala:40) with 3 output partitions
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Final stage: ResultStage 7 (first at ComparisonsSuite.scala:40)
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 6)
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Missing parents: List()
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Submitting ResultStage 7 (MapPartitionsRDD[7] at map at SingleReadBucket.scala:35), which has no missing parents
19/03/14 09:26:36 INFO storage.MemoryStore: Block broadcast_5 stored as values in memory (estimated size 4.6 KB, free 35.9 KB)
19/03/14 09:26:36 INFO storage.MemoryStore: Block broadcast_5_piece0 stored as bytes in memory (estimated size 2.3 KB, free 38.2 KB)
19/03/14 09:26:36 INFO storage.BlockManagerInfo: Added broadcast_5_piece0 in memory on localhost:33915 (size: 2.3 KB, free: 522.4 MB)
19/03/14 09:26:36 INFO spark.SparkContext: Created broadcast 5 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Submitting 3 missing tasks from ResultStage 7 (MapPartitionsRDD[7] at map at SingleReadBucket.scala:35)
19/03/14 09:26:36 INFO scheduler.TaskSchedulerImpl: Adding task set 7.0 with 3 tasks
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 7.0 (TID 13, localhost, partition 1,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 7.0 (TID 14, localhost, partition 2,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 7.0 (TID 15, localhost, partition 3,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:36 INFO executor.Executor: Running task 0.0 in stage 7.0 (TID 13)
19/03/14 09:26:36 INFO executor.Executor: Running task 2.0 in stage 7.0 (TID 15)
19/03/14 09:26:36 INFO executor.Executor: Running task 1.0 in stage 7.0 (TID 14)
19/03/14 09:26:36 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:36 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:36 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:36 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:36 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:36 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:36 INFO executor.Executor: Finished task 2.0 in stage 7.0 (TID 15). 1171 bytes result sent to driver
19/03/14 09:26:36 INFO executor.Executor: Finished task 0.0 in stage 7.0 (TID 13). 1171 bytes result sent to driver
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 7.0 (TID 15) in 6 ms on localhost (1/3)
19/03/14 09:26:36 INFO executor.Executor: Finished task 1.0 in stage 7.0 (TID 14). 1306 bytes result sent to driver
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 7.0 (TID 13) in 8 ms on localhost (2/3)
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 7.0 (TID 14) in 9 ms on localhost (3/3)
19/03/14 09:26:36 INFO scheduler.DAGScheduler: ResultStage 7 (first at ComparisonsSuite.scala:40) finished in 0.009 s
19/03/14 09:26:36 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 7.0, whose tasks have all completed, from pool 
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Job 3 finished: first at ComparisonsSuite.scala:40, took 0.015590 s
19/03/14 09:26:36 INFO spark.SparkContext: Starting job: first at ComparisonsSuite.scala:40
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Registering RDD 9 (groupBy at SingleReadBucket.scala:34)
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Got job 4 (first at ComparisonsSuite.scala:40) with 1 output partitions
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Final stage: ResultStage 9 (first at ComparisonsSuite.scala:40)
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 8)
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Missing parents: List(ShuffleMapStage 8)
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 8 (MapPartitionsRDD[9] at groupBy at SingleReadBucket.scala:34), which has no missing parents
19/03/14 09:26:36 INFO storage.MemoryStore: Block broadcast_6 stored as values in memory (estimated size 3.5 KB, free 41.7 KB)
19/03/14 09:26:36 INFO storage.MemoryStore: Block broadcast_6_piece0 stored as bytes in memory (estimated size 1915.0 B, free 43.6 KB)
19/03/14 09:26:36 INFO storage.BlockManagerInfo: Added broadcast_6_piece0 in memory on localhost:33915 (size: 1915.0 B, free: 522.4 MB)
19/03/14 09:26:36 INFO spark.SparkContext: Created broadcast 6 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 8 (MapPartitionsRDD[9] at groupBy at SingleReadBucket.scala:34)
19/03/14 09:26:36 INFO scheduler.TaskSchedulerImpl: Adding task set 8.0 with 4 tasks
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 8.0 (TID 16, localhost, partition 0,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 8.0 (TID 17, localhost, partition 1,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 8.0 (TID 18, localhost, partition 2,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 8.0 (TID 19, localhost, partition 3,PROCESS_LOCAL, 2144 bytes)
19/03/14 09:26:36 INFO executor.Executor: Running task 1.0 in stage 8.0 (TID 17)
19/03/14 09:26:36 INFO executor.Executor: Running task 3.0 in stage 8.0 (TID 19)
19/03/14 09:26:36 INFO executor.Executor: Running task 2.0 in stage 8.0 (TID 18)
19/03/14 09:26:36 INFO executor.Executor: Running task 0.0 in stage 8.0 (TID 16)
19/03/14 09:26:36 INFO executor.Executor: Finished task 1.0 in stage 8.0 (TID 17). 1090 bytes result sent to driver
19/03/14 09:26:36 INFO executor.Executor: Finished task 2.0 in stage 8.0 (TID 18). 1090 bytes result sent to driver
19/03/14 09:26:36 INFO executor.Executor: Finished task 0.0 in stage 8.0 (TID 16). 1090 bytes result sent to driver
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 8.0 (TID 17) in 8 ms on localhost (1/4)
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 8.0 (TID 18) in 7 ms on localhost (2/4)
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 8.0 (TID 16) in 11 ms on localhost (3/4)
19/03/14 09:26:36 INFO executor.Executor: Finished task 3.0 in stage 8.0 (TID 19). 1090 bytes result sent to driver
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 8.0 (TID 19) in 12 ms on localhost (4/4)
19/03/14 09:26:36 INFO scheduler.DAGScheduler: ShuffleMapStage 8 (groupBy at SingleReadBucket.scala:34) finished in 0.016 s
19/03/14 09:26:36 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 8.0, whose tasks have all completed, from pool 
19/03/14 09:26:36 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:36 INFO scheduler.DAGScheduler: running: Set()
19/03/14 09:26:36 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 9)
19/03/14 09:26:36 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Submitting ResultStage 9 (MapPartitionsRDD[11] at map at SingleReadBucket.scala:35), which has no missing parents
19/03/14 09:26:36 INFO storage.MemoryStore: Block broadcast_7 stored as values in memory (estimated size 4.6 KB, free 48.2 KB)
19/03/14 09:26:36 INFO storage.MemoryStore: Block broadcast_7_piece0 stored as bytes in memory (estimated size 2.3 KB, free 50.5 KB)
19/03/14 09:26:36 INFO storage.BlockManagerInfo: Added broadcast_7_piece0 in memory on localhost:33915 (size: 2.3 KB, free: 522.4 MB)
19/03/14 09:26:36 INFO spark.SparkContext: Created broadcast 7 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Submitting 1 missing tasks from ResultStage 9 (MapPartitionsRDD[11] at map at SingleReadBucket.scala:35)
19/03/14 09:26:36 INFO scheduler.TaskSchedulerImpl: Adding task set 9.0 with 1 tasks
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 9.0 (TID 20, localhost, partition 0,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:36 INFO executor.Executor: Running task 0.0 in stage 9.0 (TID 20)
19/03/14 09:26:36 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:36 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:36 INFO executor.Executor: Finished task 0.0 in stage 9.0 (TID 20). 1171 bytes result sent to driver
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 9.0 (TID 20) in 7 ms on localhost (1/1)
19/03/14 09:26:36 INFO scheduler.DAGScheduler: ResultStage 9 (first at ComparisonsSuite.scala:40) finished in 0.007 s
19/03/14 09:26:36 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 9.0, whose tasks have all completed, from pool 
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Job 4 finished: first at ComparisonsSuite.scala:40, took 0.033068 s
19/03/14 09:26:36 INFO spark.SparkContext: Starting job: first at ComparisonsSuite.scala:40
19/03/14 09:26:36 INFO spark.MapOutputTrackerMaster: Size of output statuses for shuffle 2 is 157 bytes
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Got job 5 (first at ComparisonsSuite.scala:40) with 3 output partitions
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Final stage: ResultStage 11 (first at ComparisonsSuite.scala:40)
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 10)
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Missing parents: List()
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Submitting ResultStage 11 (MapPartitionsRDD[11] at map at SingleReadBucket.scala:35), which has no missing parents
19/03/14 09:26:36 INFO storage.MemoryStore: Block broadcast_8 stored as values in memory (estimated size 4.6 KB, free 55.0 KB)
19/03/14 09:26:36 INFO storage.MemoryStore: Block broadcast_8_piece0 stored as bytes in memory (estimated size 2.3 KB, free 57.4 KB)
19/03/14 09:26:36 INFO storage.BlockManagerInfo: Added broadcast_8_piece0 in memory on localhost:33915 (size: 2.3 KB, free: 522.4 MB)
19/03/14 09:26:36 INFO spark.SparkContext: Created broadcast 8 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Submitting 3 missing tasks from ResultStage 11 (MapPartitionsRDD[11] at map at SingleReadBucket.scala:35)
19/03/14 09:26:36 INFO scheduler.TaskSchedulerImpl: Adding task set 11.0 with 3 tasks
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 11.0 (TID 21, localhost, partition 1,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 11.0 (TID 22, localhost, partition 2,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 11.0 (TID 23, localhost, partition 3,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:36 INFO executor.Executor: Running task 2.0 in stage 11.0 (TID 23)
19/03/14 09:26:36 INFO executor.Executor: Running task 0.0 in stage 11.0 (TID 21)
19/03/14 09:26:36 INFO executor.Executor: Running task 1.0 in stage 11.0 (TID 22)
19/03/14 09:26:36 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:36 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:36 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:36 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:36 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:36 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:36 INFO executor.Executor: Finished task 2.0 in stage 11.0 (TID 23). 1171 bytes result sent to driver
19/03/14 09:26:36 INFO executor.Executor: Finished task 0.0 in stage 11.0 (TID 21). 1171 bytes result sent to driver
19/03/14 09:26:36 INFO executor.Executor: Finished task 1.0 in stage 11.0 (TID 22). 1306 bytes result sent to driver
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 11.0 (TID 23) in 6 ms on localhost (1/3)
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 11.0 (TID 21) in 7 ms on localhost (2/3)
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 11.0 (TID 22) in 7 ms on localhost (3/3)
19/03/14 09:26:36 INFO scheduler.DAGScheduler: ResultStage 11 (first at ComparisonsSuite.scala:40) finished in 0.008 s
19/03/14 09:26:36 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 11.0, whose tasks have all completed, from pool 
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Job 5 finished: first at ComparisonsSuite.scala:40, took 0.013826 s
19/03/14 09:26:36 INFO spark.SparkContext: Starting job: first at ComparisonsSuite.scala:40
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Registering RDD 13 (groupBy at SingleReadBucket.scala:34)
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Got job 6 (first at ComparisonsSuite.scala:40) with 1 output partitions
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Final stage: ResultStage 13 (first at ComparisonsSuite.scala:40)
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 12)
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Missing parents: List(ShuffleMapStage 12)
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 12 (MapPartitionsRDD[13] at groupBy at SingleReadBucket.scala:34), which has no missing parents
19/03/14 09:26:36 INFO storage.MemoryStore: Block broadcast_9 stored as values in memory (estimated size 3.5 KB, free 60.9 KB)
19/03/14 09:26:36 INFO storage.MemoryStore: Block broadcast_9_piece0 stored as bytes in memory (estimated size 1914.0 B, free 62.7 KB)
19/03/14 09:26:36 INFO storage.BlockManagerInfo: Added broadcast_9_piece0 in memory on localhost:33915 (size: 1914.0 B, free: 522.4 MB)
19/03/14 09:26:36 INFO spark.SparkContext: Created broadcast 9 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 12 (MapPartitionsRDD[13] at groupBy at SingleReadBucket.scala:34)
19/03/14 09:26:36 INFO scheduler.TaskSchedulerImpl: Adding task set 12.0 with 4 tasks
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 12.0 (TID 24, localhost, partition 0,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 12.0 (TID 25, localhost, partition 1,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 12.0 (TID 26, localhost, partition 2,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 12.0 (TID 27, localhost, partition 3,PROCESS_LOCAL, 2144 bytes)
19/03/14 09:26:36 INFO executor.Executor: Running task 1.0 in stage 12.0 (TID 25)
19/03/14 09:26:36 INFO executor.Executor: Running task 2.0 in stage 12.0 (TID 26)
19/03/14 09:26:36 INFO executor.Executor: Running task 0.0 in stage 12.0 (TID 24)
19/03/14 09:26:36 INFO executor.Executor: Running task 3.0 in stage 12.0 (TID 27)
19/03/14 09:26:36 INFO executor.Executor: Finished task 2.0 in stage 12.0 (TID 26). 1090 bytes result sent to driver
19/03/14 09:26:36 INFO executor.Executor: Finished task 1.0 in stage 12.0 (TID 25). 1090 bytes result sent to driver
19/03/14 09:26:36 INFO executor.Executor: Finished task 0.0 in stage 12.0 (TID 24). 1090 bytes result sent to driver
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 12.0 (TID 26) in 8 ms on localhost (1/4)
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 12.0 (TID 25) in 10 ms on localhost (2/4)
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 12.0 (TID 24) in 15 ms on localhost (3/4)
19/03/14 09:26:36 INFO executor.Executor: Finished task 3.0 in stage 12.0 (TID 27). 1090 bytes result sent to driver
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 12.0 (TID 27) in 12 ms on localhost (4/4)
19/03/14 09:26:36 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 12.0, whose tasks have all completed, from pool 
19/03/14 09:26:36 INFO scheduler.DAGScheduler: ShuffleMapStage 12 (groupBy at SingleReadBucket.scala:34) finished in 0.019 s
19/03/14 09:26:36 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:36 INFO scheduler.DAGScheduler: running: Set()
19/03/14 09:26:36 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 13)
19/03/14 09:26:36 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Submitting ResultStage 13 (MapPartitionsRDD[15] at map at SingleReadBucket.scala:35), which has no missing parents
19/03/14 09:26:36 INFO storage.MemoryStore: Block broadcast_10 stored as values in memory (estimated size 4.6 KB, free 67.3 KB)
19/03/14 09:26:36 INFO storage.MemoryStore: Block broadcast_10_piece0 stored as bytes in memory (estimated size 2.3 KB, free 69.6 KB)
19/03/14 09:26:36 INFO storage.BlockManagerInfo: Added broadcast_10_piece0 in memory on localhost:33915 (size: 2.3 KB, free: 522.4 MB)
19/03/14 09:26:36 INFO spark.SparkContext: Created broadcast 10 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Submitting 1 missing tasks from ResultStage 13 (MapPartitionsRDD[15] at map at SingleReadBucket.scala:35)
19/03/14 09:26:36 INFO scheduler.TaskSchedulerImpl: Adding task set 13.0 with 1 tasks
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 13.0 (TID 28, localhost, partition 0,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:36 INFO executor.Executor: Running task 0.0 in stage 13.0 (TID 28)
19/03/14 09:26:36 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:36 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:36 INFO executor.Executor: Finished task 0.0 in stage 13.0 (TID 28). 1171 bytes result sent to driver
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 13.0 (TID 28) in 7 ms on localhost (1/1)
19/03/14 09:26:36 INFO scheduler.DAGScheduler: ResultStage 13 (first at ComparisonsSuite.scala:40) finished in 0.007 s
19/03/14 09:26:36 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 13.0, whose tasks have all completed, from pool 
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Job 6 finished: first at ComparisonsSuite.scala:40, took 0.044552 s
19/03/14 09:26:36 INFO spark.SparkContext: Starting job: first at ComparisonsSuite.scala:40
19/03/14 09:26:36 INFO spark.MapOutputTrackerMaster: Size of output statuses for shuffle 3 is 157 bytes
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Got job 7 (first at ComparisonsSuite.scala:40) with 3 output partitions
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Final stage: ResultStage 15 (first at ComparisonsSuite.scala:40)
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 14)
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Missing parents: List()
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Submitting ResultStage 15 (MapPartitionsRDD[15] at map at SingleReadBucket.scala:35), which has no missing parents
19/03/14 09:26:36 INFO storage.MemoryStore: Block broadcast_11 stored as values in memory (estimated size 4.6 KB, free 74.2 KB)
19/03/14 09:26:36 INFO storage.MemoryStore: Block broadcast_11_piece0 stored as bytes in memory (estimated size 2.3 KB, free 76.5 KB)
19/03/14 09:26:36 INFO storage.BlockManagerInfo: Added broadcast_11_piece0 in memory on localhost:33915 (size: 2.3 KB, free: 522.3 MB)
19/03/14 09:26:36 INFO spark.SparkContext: Created broadcast 11 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Submitting 3 missing tasks from ResultStage 15 (MapPartitionsRDD[15] at map at SingleReadBucket.scala:35)
19/03/14 09:26:36 INFO scheduler.TaskSchedulerImpl: Adding task set 15.0 with 3 tasks
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 15.0 (TID 29, localhost, partition 1,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 15.0 (TID 30, localhost, partition 2,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 15.0 (TID 31, localhost, partition 3,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:36 INFO executor.Executor: Running task 0.0 in stage 15.0 (TID 29)
19/03/14 09:26:36 INFO executor.Executor: Running task 1.0 in stage 15.0 (TID 30)
19/03/14 09:26:36 INFO executor.Executor: Running task 2.0 in stage 15.0 (TID 31)
19/03/14 09:26:36 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:36 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:36 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:36 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 1 ms
19/03/14 09:26:36 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:36 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:36 INFO executor.Executor: Finished task 2.0 in stage 15.0 (TID 31). 1171 bytes result sent to driver
19/03/14 09:26:36 INFO executor.Executor: Finished task 0.0 in stage 15.0 (TID 29). 1171 bytes result sent to driver
19/03/14 09:26:36 INFO executor.Executor: Finished task 1.0 in stage 15.0 (TID 30). 1306 bytes result sent to driver
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 15.0 (TID 30) in 9 ms on localhost (1/3)
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 15.0 (TID 31) in 10 ms on localhost (2/3)
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 15.0 (TID 29) in 10 ms on localhost (3/3)
19/03/14 09:26:36 INFO scheduler.DAGScheduler: ResultStage 15 (first at ComparisonsSuite.scala:40) finished in 0.010 s
19/03/14 09:26:36 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 15.0, whose tasks have all completed, from pool 
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Job 7 finished: first at ComparisonsSuite.scala:40, took 0.016158 s
19/03/14 09:26:36 INFO spark.SparkContext: Starting job: first at ComparisonsSuite.scala:40
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Registering RDD 17 (groupBy at SingleReadBucket.scala:34)
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Got job 8 (first at ComparisonsSuite.scala:40) with 1 output partitions
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Final stage: ResultStage 17 (first at ComparisonsSuite.scala:40)
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 16)
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Missing parents: List(ShuffleMapStage 16)
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 16 (MapPartitionsRDD[17] at groupBy at SingleReadBucket.scala:34), which has no missing parents
19/03/14 09:26:36 INFO storage.MemoryStore: Block broadcast_12 stored as values in memory (estimated size 3.5 KB, free 80.0 KB)
19/03/14 09:26:36 INFO storage.MemoryStore: Block broadcast_12_piece0 stored as bytes in memory (estimated size 1913.0 B, free 81.9 KB)
19/03/14 09:26:36 INFO storage.BlockManagerInfo: Added broadcast_12_piece0 in memory on localhost:33915 (size: 1913.0 B, free: 522.3 MB)
19/03/14 09:26:36 INFO spark.SparkContext: Created broadcast 12 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 16 (MapPartitionsRDD[17] at groupBy at SingleReadBucket.scala:34)
19/03/14 09:26:36 INFO scheduler.TaskSchedulerImpl: Adding task set 16.0 with 4 tasks
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 16.0 (TID 32, localhost, partition 0,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 16.0 (TID 33, localhost, partition 1,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 16.0 (TID 34, localhost, partition 2,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 16.0 (TID 35, localhost, partition 3,PROCESS_LOCAL, 2144 bytes)
19/03/14 09:26:36 INFO executor.Executor: Running task 0.0 in stage 16.0 (TID 32)
19/03/14 09:26:36 INFO executor.Executor: Running task 3.0 in stage 16.0 (TID 35)
19/03/14 09:26:36 INFO executor.Executor: Running task 1.0 in stage 16.0 (TID 33)
19/03/14 09:26:36 INFO executor.Executor: Running task 2.0 in stage 16.0 (TID 34)
19/03/14 09:26:36 INFO executor.Executor: Finished task 2.0 in stage 16.0 (TID 34). 1090 bytes result sent to driver
19/03/14 09:26:36 INFO executor.Executor: Finished task 0.0 in stage 16.0 (TID 32). 1090 bytes result sent to driver
19/03/14 09:26:36 INFO executor.Executor: Finished task 1.0 in stage 16.0 (TID 33). 1090 bytes result sent to driver
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 16.0 (TID 34) in 7 ms on localhost (1/4)
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 16.0 (TID 32) in 10 ms on localhost (2/4)
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 16.0 (TID 33) in 8 ms on localhost (3/4)
19/03/14 09:26:36 INFO executor.Executor: Finished task 3.0 in stage 16.0 (TID 35). 1090 bytes result sent to driver
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 16.0 (TID 35) in 14 ms on localhost (4/4)
19/03/14 09:26:36 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 16.0, whose tasks have all completed, from pool 
19/03/14 09:26:36 INFO scheduler.DAGScheduler: ShuffleMapStage 16 (groupBy at SingleReadBucket.scala:34) finished in 0.018 s
19/03/14 09:26:36 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:36 INFO scheduler.DAGScheduler: running: Set()
19/03/14 09:26:36 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 17)
19/03/14 09:26:36 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Submitting ResultStage 17 (MapPartitionsRDD[19] at map at SingleReadBucket.scala:35), which has no missing parents
19/03/14 09:26:36 INFO storage.MemoryStore: Block broadcast_13 stored as values in memory (estimated size 4.6 KB, free 86.4 KB)
19/03/14 09:26:36 INFO storage.MemoryStore: Block broadcast_13_piece0 stored as bytes in memory (estimated size 2.3 KB, free 88.7 KB)
19/03/14 09:26:36 INFO storage.BlockManagerInfo: Added broadcast_13_piece0 in memory on localhost:33915 (size: 2.3 KB, free: 522.3 MB)
19/03/14 09:26:36 INFO spark.SparkContext: Created broadcast 13 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Submitting 1 missing tasks from ResultStage 17 (MapPartitionsRDD[19] at map at SingleReadBucket.scala:35)
19/03/14 09:26:36 INFO scheduler.TaskSchedulerImpl: Adding task set 17.0 with 1 tasks
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 17.0 (TID 36, localhost, partition 0,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:36 INFO executor.Executor: Running task 0.0 in stage 17.0 (TID 36)
19/03/14 09:26:36 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:36 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:36 INFO executor.Executor: Finished task 0.0 in stage 17.0 (TID 36). 1171 bytes result sent to driver
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 17.0 (TID 36) in 9 ms on localhost (1/1)
19/03/14 09:26:36 INFO scheduler.DAGScheduler: ResultStage 17 (first at ComparisonsSuite.scala:40) finished in 0.009 s
19/03/14 09:26:36 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 17.0, whose tasks have all completed, from pool 
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Job 8 finished: first at ComparisonsSuite.scala:40, took 0.038734 s
19/03/14 09:26:36 INFO spark.SparkContext: Starting job: first at ComparisonsSuite.scala:40
19/03/14 09:26:36 INFO spark.MapOutputTrackerMaster: Size of output statuses for shuffle 4 is 157 bytes
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Got job 9 (first at ComparisonsSuite.scala:40) with 3 output partitions
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Final stage: ResultStage 19 (first at ComparisonsSuite.scala:40)
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 18)
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Missing parents: List()
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Submitting ResultStage 19 (MapPartitionsRDD[19] at map at SingleReadBucket.scala:35), which has no missing parents
19/03/14 09:26:36 INFO storage.MemoryStore: Block broadcast_14 stored as values in memory (estimated size 4.6 KB, free 93.3 KB)
19/03/14 09:26:36 INFO storage.MemoryStore: Block broadcast_14_piece0 stored as bytes in memory (estimated size 2.3 KB, free 95.6 KB)
19/03/14 09:26:36 INFO storage.BlockManagerInfo: Added broadcast_14_piece0 in memory on localhost:33915 (size: 2.3 KB, free: 522.3 MB)
19/03/14 09:26:36 INFO spark.SparkContext: Created broadcast 14 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Submitting 3 missing tasks from ResultStage 19 (MapPartitionsRDD[19] at map at SingleReadBucket.scala:35)
19/03/14 09:26:36 INFO scheduler.TaskSchedulerImpl: Adding task set 19.0 with 3 tasks
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 19.0 (TID 37, localhost, partition 1,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 19.0 (TID 38, localhost, partition 2,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 19.0 (TID 39, localhost, partition 3,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:36 INFO executor.Executor: Running task 2.0 in stage 19.0 (TID 39)
19/03/14 09:26:36 INFO executor.Executor: Running task 1.0 in stage 19.0 (TID 38)
19/03/14 09:26:36 INFO executor.Executor: Running task 0.0 in stage 19.0 (TID 37)
19/03/14 09:26:36 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:36 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:36 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 1 ms
19/03/14 09:26:36 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 1 ms
19/03/14 09:26:36 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:36 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 1 ms
19/03/14 09:26:36 INFO executor.Executor: Finished task 2.0 in stage 19.0 (TID 39). 1171 bytes result sent to driver
19/03/14 09:26:36 INFO executor.Executor: Finished task 0.0 in stage 19.0 (TID 37). 1171 bytes result sent to driver
19/03/14 09:26:36 INFO executor.Executor: Finished task 1.0 in stage 19.0 (TID 38). 1306 bytes result sent to driver
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 19.0 (TID 39) in 7 ms on localhost (1/3)
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 19.0 (TID 37) in 8 ms on localhost (2/3)
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 19.0 (TID 38) in 8 ms on localhost (3/3)
19/03/14 09:26:36 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 19.0, whose tasks have all completed, from pool 
19/03/14 09:26:36 INFO scheduler.DAGScheduler: ResultStage 19 (first at ComparisonsSuite.scala:40) finished in 0.009 s
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Job 9 finished: first at ComparisonsSuite.scala:40, took 0.016494 s
19/03/14 09:26:36 INFO spark.SparkContext: Starting job: first at ComparisonsSuite.scala:40
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Registering RDD 21 (groupBy at SingleReadBucket.scala:34)
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Got job 10 (first at ComparisonsSuite.scala:40) with 1 output partitions
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Final stage: ResultStage 21 (first at ComparisonsSuite.scala:40)
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 20)
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Missing parents: List(ShuffleMapStage 20)
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 20 (MapPartitionsRDD[21] at groupBy at SingleReadBucket.scala:34), which has no missing parents
19/03/14 09:26:36 INFO storage.MemoryStore: Block broadcast_15 stored as values in memory (estimated size 3.5 KB, free 99.1 KB)
19/03/14 09:26:36 INFO storage.MemoryStore: Block broadcast_15_piece0 stored as bytes in memory (estimated size 1914.0 B, free 101.0 KB)
19/03/14 09:26:36 INFO storage.BlockManagerInfo: Added broadcast_15_piece0 in memory on localhost:33915 (size: 1914.0 B, free: 522.3 MB)
19/03/14 09:26:36 INFO spark.SparkContext: Created broadcast 15 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:36 INFO storage.BlockManagerInfo: Removed broadcast_7_piece0 on localhost:33915 in memory (size: 2.3 KB, free: 522.3 MB)
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 20 (MapPartitionsRDD[21] at groupBy at SingleReadBucket.scala:34)
19/03/14 09:26:36 INFO scheduler.TaskSchedulerImpl: Adding task set 20.0 with 4 tasks
19/03/14 09:26:36 INFO spark.ContextCleaner: Cleaned accumulator 157
19/03/14 09:26:36 INFO spark.ContextCleaner: Cleaned shuffle 0
19/03/14 09:26:36 INFO storage.BlockManagerInfo: Removed broadcast_11_piece0 on localhost:33915 in memory (size: 2.3 KB, free: 522.3 MB)
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 20.0 (TID 40, localhost, partition 0,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:36 INFO spark.ContextCleaner: Cleaned accumulator 168
19/03/14 09:26:36 INFO storage.BlockManagerInfo: Removed broadcast_10_piece0 on localhost:33915 in memory (size: 2.3 KB, free: 522.3 MB)
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 20.0 (TID 41, localhost, partition 1,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:36 INFO spark.ContextCleaner: Cleaned accumulator 167
19/03/14 09:26:36 INFO storage.BlockManagerInfo: Removed broadcast_9_piece0 on localhost:33915 in memory (size: 1914.0 B, free: 522.3 MB)
19/03/14 09:26:36 INFO spark.ContextCleaner: Cleaned accumulator 166
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 20.0 (TID 42, localhost, partition 2,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:36 INFO spark.ContextCleaner: Cleaned shuffle 3
19/03/14 09:26:36 INFO storage.BlockManagerInfo: Removed broadcast_8_piece0 on localhost:33915 in memory (size: 2.3 KB, free: 522.4 MB)
19/03/14 09:26:36 INFO spark.ContextCleaner: Cleaned accumulator 165
19/03/14 09:26:36 INFO spark.ContextCleaner: Cleaned accumulator 164
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 20.0 (TID 43, localhost, partition 3,PROCESS_LOCAL, 2144 bytes)
19/03/14 09:26:36 INFO executor.Executor: Running task 2.0 in stage 20.0 (TID 42)
19/03/14 09:26:36 INFO executor.Executor: Running task 3.0 in stage 20.0 (TID 43)
19/03/14 09:26:36 INFO executor.Executor: Running task 1.0 in stage 20.0 (TID 41)
19/03/14 09:26:36 INFO executor.Executor: Running task 0.0 in stage 20.0 (TID 40)
19/03/14 09:26:36 INFO storage.BlockManagerInfo: Removed broadcast_6_piece0 on localhost:33915 in memory (size: 1915.0 B, free: 522.4 MB)
19/03/14 09:26:36 INFO spark.ContextCleaner: Cleaned accumulator 163
19/03/14 09:26:36 INFO spark.ContextCleaner: Cleaned shuffle 2
19/03/14 09:26:36 INFO storage.BlockManagerInfo: Removed broadcast_5_piece0 on localhost:33915 in memory (size: 2.3 KB, free: 522.4 MB)
19/03/14 09:26:36 INFO spark.ContextCleaner: Cleaned accumulator 162
19/03/14 09:26:36 INFO storage.BlockManagerInfo: Removed broadcast_4_piece0 on localhost:33915 in memory (size: 2.3 KB, free: 522.4 MB)
19/03/14 09:26:36 INFO spark.ContextCleaner: Cleaned accumulator 161
19/03/14 09:26:36 INFO storage.BlockManagerInfo: Removed broadcast_3_piece0 on localhost:33915 in memory (size: 1912.0 B, free: 522.4 MB)
19/03/14 09:26:36 INFO spark.ContextCleaner: Cleaned accumulator 160
19/03/14 09:26:36 INFO executor.Executor: Finished task 2.0 in stage 20.0 (TID 42). 1090 bytes result sent to driver
19/03/14 09:26:36 INFO spark.ContextCleaner: Cleaned shuffle 1
19/03/14 09:26:36 INFO executor.Executor: Finished task 1.0 in stage 20.0 (TID 41). 1090 bytes result sent to driver
19/03/14 09:26:36 INFO executor.Executor: Finished task 0.0 in stage 20.0 (TID 40). 1090 bytes result sent to driver
19/03/14 09:26:36 INFO storage.BlockManagerInfo: Removed broadcast_2_piece0 on localhost:33915 in memory (size: 2.3 KB, free: 522.4 MB)
19/03/14 09:26:36 INFO spark.ContextCleaner: Cleaned accumulator 159
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 20.0 (TID 42) in 7 ms on localhost (1/4)
19/03/14 09:26:36 INFO storage.BlockManagerInfo: Removed broadcast_1_piece0 on localhost:33915 in memory (size: 2.3 KB, free: 522.4 MB)
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 20.0 (TID 41) in 8 ms on localhost (2/4)
19/03/14 09:26:36 INFO spark.ContextCleaner: Cleaned accumulator 158
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 20.0 (TID 40) in 11 ms on localhost (3/4)
19/03/14 09:26:36 INFO storage.BlockManagerInfo: Removed broadcast_0_piece0 on localhost:33915 in memory (size: 1915.0 B, free: 522.4 MB)
19/03/14 09:26:36 INFO storage.BlockManagerInfo: Removed broadcast_14_piece0 on localhost:33915 in memory (size: 2.3 KB, free: 522.4 MB)
19/03/14 09:26:36 INFO spark.ContextCleaner: Cleaned accumulator 171
19/03/14 09:26:36 INFO storage.BlockManagerInfo: Removed broadcast_13_piece0 on localhost:33915 in memory (size: 2.3 KB, free: 522.4 MB)
19/03/14 09:26:36 INFO spark.ContextCleaner: Cleaned accumulator 170
19/03/14 09:26:36 INFO storage.BlockManagerInfo: Removed broadcast_12_piece0 on localhost:33915 in memory (size: 1913.0 B, free: 522.4 MB)
19/03/14 09:26:36 INFO spark.ContextCleaner: Cleaned accumulator 169
19/03/14 09:26:36 INFO spark.ContextCleaner: Cleaned shuffle 4
19/03/14 09:26:36 INFO executor.Executor: Finished task 3.0 in stage 20.0 (TID 43). 1090 bytes result sent to driver
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 20.0 (TID 43) in 11 ms on localhost (4/4)
19/03/14 09:26:36 INFO scheduler.DAGScheduler: ShuffleMapStage 20 (groupBy at SingleReadBucket.scala:34) finished in 0.016 s
19/03/14 09:26:36 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 20.0, whose tasks have all completed, from pool 
19/03/14 09:26:36 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:36 INFO scheduler.DAGScheduler: running: Set()
19/03/14 09:26:36 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 21)
19/03/14 09:26:36 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Submitting ResultStage 21 (MapPartitionsRDD[23] at map at SingleReadBucket.scala:35), which has no missing parents
19/03/14 09:26:36 INFO storage.MemoryStore: Block broadcast_16 stored as values in memory (estimated size 4.6 KB, free 9.9 KB)
19/03/14 09:26:36 INFO storage.MemoryStore: Block broadcast_16_piece0 stored as bytes in memory (estimated size 2.3 KB, free 12.2 KB)
19/03/14 09:26:36 INFO storage.BlockManagerInfo: Added broadcast_16_piece0 in memory on localhost:33915 (size: 2.3 KB, free: 522.4 MB)
19/03/14 09:26:36 INFO spark.SparkContext: Created broadcast 16 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Submitting 1 missing tasks from ResultStage 21 (MapPartitionsRDD[23] at map at SingleReadBucket.scala:35)
19/03/14 09:26:36 INFO scheduler.TaskSchedulerImpl: Adding task set 21.0 with 1 tasks
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 21.0 (TID 44, localhost, partition 0,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:36 INFO executor.Executor: Running task 0.0 in stage 21.0 (TID 44)
19/03/14 09:26:36 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:36 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:36 INFO executor.Executor: Finished task 0.0 in stage 21.0 (TID 44). 1171 bytes result sent to driver
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 21.0 (TID 44) in 5 ms on localhost (1/1)
19/03/14 09:26:36 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 21.0, whose tasks have all completed, from pool 
19/03/14 09:26:36 INFO scheduler.DAGScheduler: ResultStage 21 (first at ComparisonsSuite.scala:40) finished in 0.006 s
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Job 10 finished: first at ComparisonsSuite.scala:40, took 0.041855 s
19/03/14 09:26:36 INFO spark.SparkContext: Starting job: first at ComparisonsSuite.scala:40
19/03/14 09:26:36 INFO spark.MapOutputTrackerMaster: Size of output statuses for shuffle 5 is 157 bytes
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Got job 11 (first at ComparisonsSuite.scala:40) with 3 output partitions
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Final stage: ResultStage 23 (first at ComparisonsSuite.scala:40)
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 22)
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Missing parents: List()
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Submitting ResultStage 23 (MapPartitionsRDD[23] at map at SingleReadBucket.scala:35), which has no missing parents
19/03/14 09:26:36 INFO storage.MemoryStore: Block broadcast_17 stored as values in memory (estimated size 4.6 KB, free 16.8 KB)
19/03/14 09:26:36 INFO storage.MemoryStore: Block broadcast_17_piece0 stored as bytes in memory (estimated size 2.3 KB, free 19.1 KB)
19/03/14 09:26:36 INFO storage.BlockManagerInfo: Added broadcast_17_piece0 in memory on localhost:33915 (size: 2.3 KB, free: 522.4 MB)
19/03/14 09:26:36 INFO spark.SparkContext: Created broadcast 17 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Submitting 3 missing tasks from ResultStage 23 (MapPartitionsRDD[23] at map at SingleReadBucket.scala:35)
19/03/14 09:26:36 INFO scheduler.TaskSchedulerImpl: Adding task set 23.0 with 3 tasks
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 23.0 (TID 45, localhost, partition 1,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 23.0 (TID 46, localhost, partition 2,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 23.0 (TID 47, localhost, partition 3,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:36 INFO executor.Executor: Running task 0.0 in stage 23.0 (TID 45)
19/03/14 09:26:36 INFO executor.Executor: Running task 2.0 in stage 23.0 (TID 47)
19/03/14 09:26:36 INFO executor.Executor: Running task 1.0 in stage 23.0 (TID 46)
19/03/14 09:26:36 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:36 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:36 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:36 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:36 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:36 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:36 INFO executor.Executor: Finished task 2.0 in stage 23.0 (TID 47). 1171 bytes result sent to driver
19/03/14 09:26:36 INFO executor.Executor: Finished task 0.0 in stage 23.0 (TID 45). 1171 bytes result sent to driver
19/03/14 09:26:36 INFO executor.Executor: Finished task 1.0 in stage 23.0 (TID 46). 1306 bytes result sent to driver
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 23.0 (TID 47) in 6 ms on localhost (1/3)
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 23.0 (TID 45) in 7 ms on localhost (2/3)
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 23.0 (TID 46) in 8 ms on localhost (3/3)
19/03/14 09:26:36 INFO scheduler.DAGScheduler: ResultStage 23 (first at ComparisonsSuite.scala:40) finished in 0.008 s
19/03/14 09:26:36 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 23.0, whose tasks have all completed, from pool 
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Job 11 finished: first at ComparisonsSuite.scala:40, took 0.013626 s
19/03/14 09:26:36 INFO spark.SparkContext: Starting job: first at ComparisonsSuite.scala:40
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Registering RDD 25 (groupBy at SingleReadBucket.scala:34)
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Got job 12 (first at ComparisonsSuite.scala:40) with 1 output partitions
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Final stage: ResultStage 25 (first at ComparisonsSuite.scala:40)
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 24)
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Missing parents: List(ShuffleMapStage 24)
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 24 (MapPartitionsRDD[25] at groupBy at SingleReadBucket.scala:34), which has no missing parents
19/03/14 09:26:36 INFO storage.MemoryStore: Block broadcast_18 stored as values in memory (estimated size 3.5 KB, free 22.6 KB)
19/03/14 09:26:36 INFO storage.MemoryStore: Block broadcast_18_piece0 stored as bytes in memory (estimated size 1915.0 B, free 24.5 KB)
19/03/14 09:26:36 INFO storage.BlockManagerInfo: Added broadcast_18_piece0 in memory on localhost:33915 (size: 1915.0 B, free: 522.4 MB)
19/03/14 09:26:36 INFO spark.SparkContext: Created broadcast 18 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 24 (MapPartitionsRDD[25] at groupBy at SingleReadBucket.scala:34)
19/03/14 09:26:36 INFO scheduler.TaskSchedulerImpl: Adding task set 24.0 with 4 tasks
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 24.0 (TID 48, localhost, partition 0,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 24.0 (TID 49, localhost, partition 1,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 24.0 (TID 50, localhost, partition 2,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 24.0 (TID 51, localhost, partition 3,PROCESS_LOCAL, 2144 bytes)
19/03/14 09:26:36 INFO executor.Executor: Running task 2.0 in stage 24.0 (TID 50)
19/03/14 09:26:36 INFO executor.Executor: Running task 1.0 in stage 24.0 (TID 49)
19/03/14 09:26:36 INFO executor.Executor: Running task 0.0 in stage 24.0 (TID 48)
19/03/14 09:26:36 INFO executor.Executor: Running task 3.0 in stage 24.0 (TID 51)
19/03/14 09:26:36 INFO executor.Executor: Finished task 2.0 in stage 24.0 (TID 50). 1090 bytes result sent to driver
19/03/14 09:26:36 INFO executor.Executor: Finished task 1.0 in stage 24.0 (TID 49). 1090 bytes result sent to driver
19/03/14 09:26:36 INFO executor.Executor: Finished task 0.0 in stage 24.0 (TID 48). 1090 bytes result sent to driver
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 24.0 (TID 50) in 9 ms on localhost (1/4)
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 24.0 (TID 49) in 11 ms on localhost (2/4)
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 24.0 (TID 48) in 14 ms on localhost (3/4)
19/03/14 09:26:36 INFO executor.Executor: Finished task 3.0 in stage 24.0 (TID 51). 1090 bytes result sent to driver
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 24.0 (TID 51) in 12 ms on localhost (4/4)
19/03/14 09:26:36 INFO scheduler.DAGScheduler: ShuffleMapStage 24 (groupBy at SingleReadBucket.scala:34) finished in 0.018 s
19/03/14 09:26:36 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 24.0, whose tasks have all completed, from pool 
19/03/14 09:26:36 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:36 INFO scheduler.DAGScheduler: running: Set()
19/03/14 09:26:36 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 25)
19/03/14 09:26:36 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Submitting ResultStage 25 (MapPartitionsRDD[27] at map at SingleReadBucket.scala:35), which has no missing parents
19/03/14 09:26:36 INFO storage.MemoryStore: Block broadcast_19 stored as values in memory (estimated size 4.6 KB, free 29.0 KB)
19/03/14 09:26:36 INFO storage.MemoryStore: Block broadcast_19_piece0 stored as bytes in memory (estimated size 2.3 KB, free 31.4 KB)
19/03/14 09:26:36 INFO storage.BlockManagerInfo: Added broadcast_19_piece0 in memory on localhost:33915 (size: 2.3 KB, free: 522.4 MB)
19/03/14 09:26:36 INFO spark.SparkContext: Created broadcast 19 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Submitting 1 missing tasks from ResultStage 25 (MapPartitionsRDD[27] at map at SingleReadBucket.scala:35)
19/03/14 09:26:36 INFO scheduler.TaskSchedulerImpl: Adding task set 25.0 with 1 tasks
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 25.0 (TID 52, localhost, partition 0,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:36 INFO executor.Executor: Running task 0.0 in stage 25.0 (TID 52)
19/03/14 09:26:36 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:36 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:36 INFO executor.Executor: Finished task 0.0 in stage 25.0 (TID 52). 1171 bytes result sent to driver
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 25.0 (TID 52) in 6 ms on localhost (1/1)
19/03/14 09:26:36 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 25.0, whose tasks have all completed, from pool 
19/03/14 09:26:36 INFO scheduler.DAGScheduler: ResultStage 25 (first at ComparisonsSuite.scala:40) finished in 0.007 s
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Job 12 finished: first at ComparisonsSuite.scala:40, took 0.036001 s
19/03/14 09:26:36 INFO spark.SparkContext: Starting job: first at ComparisonsSuite.scala:40
19/03/14 09:26:36 INFO spark.MapOutputTrackerMaster: Size of output statuses for shuffle 6 is 157 bytes
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Got job 13 (first at ComparisonsSuite.scala:40) with 3 output partitions
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Final stage: ResultStage 27 (first at ComparisonsSuite.scala:40)
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 26)
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Missing parents: List()
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Submitting ResultStage 27 (MapPartitionsRDD[27] at map at SingleReadBucket.scala:35), which has no missing parents
19/03/14 09:26:36 INFO storage.MemoryStore: Block broadcast_20 stored as values in memory (estimated size 4.6 KB, free 35.9 KB)
19/03/14 09:26:36 INFO storage.MemoryStore: Block broadcast_20_piece0 stored as bytes in memory (estimated size 2.3 KB, free 38.2 KB)
19/03/14 09:26:36 INFO storage.BlockManagerInfo: Added broadcast_20_piece0 in memory on localhost:33915 (size: 2.3 KB, free: 522.4 MB)
19/03/14 09:26:36 INFO spark.SparkContext: Created broadcast 20 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Submitting 3 missing tasks from ResultStage 27 (MapPartitionsRDD[27] at map at SingleReadBucket.scala:35)
19/03/14 09:26:36 INFO scheduler.TaskSchedulerImpl: Adding task set 27.0 with 3 tasks
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 27.0 (TID 53, localhost, partition 1,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 27.0 (TID 54, localhost, partition 2,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 27.0 (TID 55, localhost, partition 3,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:36 INFO executor.Executor: Running task 0.0 in stage 27.0 (TID 53)
19/03/14 09:26:36 INFO executor.Executor: Running task 1.0 in stage 27.0 (TID 54)
19/03/14 09:26:36 INFO executor.Executor: Running task 2.0 in stage 27.0 (TID 55)
19/03/14 09:26:36 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:36 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:36 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:36 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:36 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:36 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:36 INFO executor.Executor: Finished task 1.0 in stage 27.0 (TID 54). 1306 bytes result sent to driver
19/03/14 09:26:36 INFO executor.Executor: Finished task 2.0 in stage 27.0 (TID 55). 1171 bytes result sent to driver
19/03/14 09:26:36 INFO executor.Executor: Finished task 0.0 in stage 27.0 (TID 53). 1171 bytes result sent to driver
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 27.0 (TID 54) in 8 ms on localhost (1/3)
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 27.0 (TID 55) in 9 ms on localhost (2/3)
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 27.0 (TID 53) in 9 ms on localhost (3/3)
19/03/14 09:26:36 INFO scheduler.DAGScheduler: ResultStage 27 (first at ComparisonsSuite.scala:40) finished in 0.009 s
19/03/14 09:26:36 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 27.0, whose tasks have all completed, from pool 
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Job 13 finished: first at ComparisonsSuite.scala:40, took 0.015180 s
19/03/14 09:26:36 INFO spark.SparkContext: Starting job: first at ComparisonsSuite.scala:40
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Registering RDD 29 (groupBy at SingleReadBucket.scala:34)
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Got job 14 (first at ComparisonsSuite.scala:40) with 1 output partitions
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Final stage: ResultStage 29 (first at ComparisonsSuite.scala:40)
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 28)
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Missing parents: List(ShuffleMapStage 28)
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 28 (MapPartitionsRDD[29] at groupBy at SingleReadBucket.scala:34), which has no missing parents
19/03/14 09:26:36 INFO storage.MemoryStore: Block broadcast_21 stored as values in memory (estimated size 3.5 KB, free 41.7 KB)
19/03/14 09:26:36 INFO storage.MemoryStore: Block broadcast_21_piece0 stored as bytes in memory (estimated size 1913.0 B, free 43.6 KB)
19/03/14 09:26:36 INFO storage.BlockManagerInfo: Added broadcast_21_piece0 in memory on localhost:33915 (size: 1913.0 B, free: 522.4 MB)
19/03/14 09:26:36 INFO spark.SparkContext: Created broadcast 21 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 28 (MapPartitionsRDD[29] at groupBy at SingleReadBucket.scala:34)
19/03/14 09:26:36 INFO scheduler.TaskSchedulerImpl: Adding task set 28.0 with 4 tasks
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 28.0 (TID 56, localhost, partition 0,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 28.0 (TID 57, localhost, partition 1,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 28.0 (TID 58, localhost, partition 2,PROCESS_LOCAL, 2012 bytes)
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 28.0 (TID 59, localhost, partition 3,PROCESS_LOCAL, 2144 bytes)
19/03/14 09:26:36 INFO executor.Executor: Running task 1.0 in stage 28.0 (TID 57)
19/03/14 09:26:36 INFO executor.Executor: Running task 2.0 in stage 28.0 (TID 58)
19/03/14 09:26:36 INFO executor.Executor: Running task 3.0 in stage 28.0 (TID 59)
19/03/14 09:26:36 INFO executor.Executor: Running task 0.0 in stage 28.0 (TID 56)
19/03/14 09:26:36 INFO executor.Executor: Finished task 2.0 in stage 28.0 (TID 58). 1090 bytes result sent to driver
19/03/14 09:26:36 INFO executor.Executor: Finished task 1.0 in stage 28.0 (TID 57). 1090 bytes result sent to driver
19/03/14 09:26:36 INFO executor.Executor: Finished task 0.0 in stage 28.0 (TID 56). 1090 bytes result sent to driver
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 28.0 (TID 57) in 8 ms on localhost (1/4)
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 28.0 (TID 58) in 8 ms on localhost (2/4)
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 28.0 (TID 56) in 12 ms on localhost (3/4)
19/03/14 09:26:36 INFO executor.Executor: Finished task 3.0 in stage 28.0 (TID 59). 1090 bytes result sent to driver
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 28.0 (TID 59) in 12 ms on localhost (4/4)
19/03/14 09:26:36 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 28.0, whose tasks have all completed, from pool 
19/03/14 09:26:36 INFO scheduler.DAGScheduler: ShuffleMapStage 28 (groupBy at SingleReadBucket.scala:34) finished in 0.016 s
19/03/14 09:26:36 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:36 INFO scheduler.DAGScheduler: running: Set()
19/03/14 09:26:36 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 29)
19/03/14 09:26:36 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Submitting ResultStage 29 (MapPartitionsRDD[31] at map at SingleReadBucket.scala:35), which has no missing parents
19/03/14 09:26:36 INFO storage.MemoryStore: Block broadcast_22 stored as values in memory (estimated size 4.6 KB, free 48.2 KB)
19/03/14 09:26:36 INFO storage.MemoryStore: Block broadcast_22_piece0 stored as bytes in memory (estimated size 2.3 KB, free 50.5 KB)
19/03/14 09:26:36 INFO storage.BlockManagerInfo: Added broadcast_22_piece0 in memory on localhost:33915 (size: 2.3 KB, free: 522.4 MB)
19/03/14 09:26:36 INFO spark.SparkContext: Created broadcast 22 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Submitting 1 missing tasks from ResultStage 29 (MapPartitionsRDD[31] at map at SingleReadBucket.scala:35)
19/03/14 09:26:36 INFO scheduler.TaskSchedulerImpl: Adding task set 29.0 with 1 tasks
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 29.0 (TID 60, localhost, partition 0,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:36 INFO executor.Executor: Running task 0.0 in stage 29.0 (TID 60)
19/03/14 09:26:36 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:36 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:36 INFO executor.Executor: Finished task 0.0 in stage 29.0 (TID 60). 1171 bytes result sent to driver
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 29.0 (TID 60) in 6 ms on localhost (1/1)
19/03/14 09:26:36 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 29.0, whose tasks have all completed, from pool 
19/03/14 09:26:36 INFO scheduler.DAGScheduler: ResultStage 29 (first at ComparisonsSuite.scala:40) finished in 0.006 s
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Job 14 finished: first at ComparisonsSuite.scala:40, took 0.034095 s
19/03/14 09:26:36 INFO spark.SparkContext: Starting job: first at ComparisonsSuite.scala:40
19/03/14 09:26:36 INFO spark.MapOutputTrackerMaster: Size of output statuses for shuffle 7 is 157 bytes
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Got job 15 (first at ComparisonsSuite.scala:40) with 3 output partitions
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Final stage: ResultStage 31 (first at ComparisonsSuite.scala:40)
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 30)
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Missing parents: List()
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Submitting ResultStage 31 (MapPartitionsRDD[31] at map at SingleReadBucket.scala:35), which has no missing parents
19/03/14 09:26:36 INFO storage.MemoryStore: Block broadcast_23 stored as values in memory (estimated size 4.6 KB, free 55.0 KB)
19/03/14 09:26:36 INFO storage.MemoryStore: Block broadcast_23_piece0 stored as bytes in memory (estimated size 2.3 KB, free 57.4 KB)
19/03/14 09:26:36 INFO storage.BlockManagerInfo: Added broadcast_23_piece0 in memory on localhost:33915 (size: 2.3 KB, free: 522.4 MB)
19/03/14 09:26:36 INFO spark.SparkContext: Created broadcast 23 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Submitting 3 missing tasks from ResultStage 31 (MapPartitionsRDD[31] at map at SingleReadBucket.scala:35)
19/03/14 09:26:36 INFO scheduler.TaskSchedulerImpl: Adding task set 31.0 with 3 tasks
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 31.0 (TID 61, localhost, partition 1,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 31.0 (TID 62, localhost, partition 2,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 31.0 (TID 63, localhost, partition 3,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:36 INFO executor.Executor: Running task 0.0 in stage 31.0 (TID 61)
19/03/14 09:26:36 INFO executor.Executor: Running task 1.0 in stage 31.0 (TID 62)
19/03/14 09:26:36 INFO executor.Executor: Running task 2.0 in stage 31.0 (TID 63)
19/03/14 09:26:36 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:36 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:36 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:36 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:36 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:36 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 1 ms
19/03/14 09:26:36 INFO executor.Executor: Finished task 0.0 in stage 31.0 (TID 61). 1171 bytes result sent to driver
19/03/14 09:26:36 INFO executor.Executor: Finished task 2.0 in stage 31.0 (TID 63). 1171 bytes result sent to driver
19/03/14 09:26:36 INFO executor.Executor: Finished task 1.0 in stage 31.0 (TID 62). 1306 bytes result sent to driver
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 31.0 (TID 61) in 9 ms on localhost (1/3)
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 31.0 (TID 63) in 10 ms on localhost (2/3)
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 31.0 (TID 62) in 10 ms on localhost (3/3)
19/03/14 09:26:36 INFO scheduler.DAGScheduler: ResultStage 31 (first at ComparisonsSuite.scala:40) finished in 0.012 s
19/03/14 09:26:36 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 31.0, whose tasks have all completed, from pool 
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Job 15 finished: first at ComparisonsSuite.scala:40, took 0.017635 s
19/03/14 09:26:36 INFO spark.MapOutputTrackerMasterEndpoint: MapOutputTrackerMasterEndpoint stopped!
19/03/14 09:26:36 INFO storage.MemoryStore: MemoryStore cleared
19/03/14 09:26:36 INFO storage.BlockManager: BlockManager stopped
19/03/14 09:26:36 INFO storage.BlockManagerMaster: BlockManagerMaster stopped
19/03/14 09:26:36 INFO scheduler.OutputCommitCoordinator$OutputCommitCoordinatorEndpoint: OutputCommitCoordinator stopped!
19/03/14 09:26:36 INFO remote.RemoteActorRefProvider$RemotingTerminator: Shutting down remote daemon.
19/03/14 09:26:36 INFO remote.RemoteActorRefProvider$RemotingTerminator: Remote daemon shut down; proceeding with flushing remote transports.
19/03/14 09:26:36 INFO spark.SparkContext: Successfully stopped SparkContext
19/03/14 09:26:36 INFO spark.SparkContext: Running Spark version 1.6.1
19/03/14 09:26:36 INFO remote.RemoteActorRefProvider$RemotingTerminator: Remoting shut down.
19/03/14 09:26:36 INFO spark.SecurityManager: Changing view acls to: jenkins
19/03/14 09:26:36 INFO spark.SecurityManager: Changing modify acls to: jenkins
19/03/14 09:26:36 INFO spark.SecurityManager: SecurityManager: authentication disabled; ui acls disabled; users with view permissions: Set(jenkins); users with modify permissions: Set(jenkins)
19/03/14 09:26:36 INFO util.Utils: Successfully started service 'sparkDriver' on port 52663.
19/03/14 09:26:36 INFO slf4j.Slf4jLogger: Slf4jLogger started
19/03/14 09:26:36 INFO Remoting: Starting remoting
19/03/14 09:26:36 INFO Remoting: Remoting started; listening on addresses :[akka.tcp://sparkDriverActorSystem@localhost:52664]
19/03/14 09:26:36 INFO util.Utils: Successfully started service 'sparkDriverActorSystem' on port 52664.
19/03/14 09:26:36 INFO spark.SparkEnv: Registering MapOutputTracker
19/03/14 09:26:36 INFO spark.SparkEnv: Registering BlockManagerMaster
19/03/14 09:26:36 INFO storage.DiskBlockManager: Created local directory at /tmp/blockmgr-2c56bedf-20f3-42bf-9cb6-4d2ff1d3d67c
19/03/14 09:26:36 INFO storage.MemoryStore: MemoryStore started with capacity 521.6 MB
19/03/14 09:26:36 INFO spark.SparkEnv: Registering OutputCommitCoordinator
19/03/14 09:26:36 INFO executor.Executor: Starting executor ID driver on host localhost
19/03/14 09:26:36 INFO util.Utils: Successfully started service 'org.apache.spark.network.netty.NettyBlockTransferService' on port 35494.
19/03/14 09:26:36 INFO netty.NettyBlockTransferService: Server created on 35494
19/03/14 09:26:36 INFO storage.BlockManagerMaster: Trying to register BlockManager
19/03/14 09:26:36 INFO storage.BlockManagerMasterEndpoint: Registering block manager localhost:35494 with 521.6 MB RAM, BlockManagerId(driver, localhost, 35494)
19/03/14 09:26:36 INFO storage.BlockManagerMaster: Registered BlockManager
19/03/14 09:26:36 INFO spark.MapOutputTrackerMasterEndpoint: MapOutputTrackerMasterEndpoint stopped!
19/03/14 09:26:36 INFO storage.MemoryStore: MemoryStore cleared
19/03/14 09:26:36 INFO storage.BlockManager: BlockManager stopped
19/03/14 09:26:36 INFO storage.BlockManagerMaster: BlockManagerMaster stopped
19/03/14 09:26:36 INFO scheduler.OutputCommitCoordinator$OutputCommitCoordinatorEndpoint: OutputCommitCoordinator stopped!
19/03/14 09:26:36 INFO remote.RemoteActorRefProvider$RemotingTerminator: Shutting down remote daemon.
19/03/14 09:26:36 INFO remote.RemoteActorRefProvider$RemotingTerminator: Remote daemon shut down; proceeding with flushing remote transports.
19/03/14 09:26:36 INFO spark.SparkContext: Successfully stopped SparkContext
- Test base quality scores
19/03/14 09:26:36 INFO remote.RemoteActorRefProvider$RemotingTerminator: Remoting shut down.
19/03/14 09:26:36 WARN contamination.VariantSite: Failed to create observation for read null due to java.lang.StringIndexOutOfBoundsException: String index out of range: 0. Dropping...
19/03/14 09:26:36 INFO spark.SparkContext: Running Spark version 1.6.1
19/03/14 09:26:36 INFO spark.SecurityManager: Changing view acls to: jenkins
19/03/14 09:26:36 INFO spark.SecurityManager: Changing modify acls to: jenkins
19/03/14 09:26:36 INFO spark.SecurityManager: SecurityManager: authentication disabled; ui acls disabled; users with view permissions: Set(jenkins); users with modify permissions: Set(jenkins)
VariantSiteSuite:
- read overlaps a site and agrees with the reference
- read overlaps a site and agrees with the alt
- read overlaps a site and is an other-alt
- read has no bases and should fail on conversion
ReadStatsSuite:
- perfect read
- noQualRead should be equivalent to the perfect read, and should not NPE
- read failed vendor qc
- read is a dupe
- all of the bases in a read are low quality
- the start/end of the read have low quality scores
- read's mapping quality is zero
- read is mapped with low, but non-zero mapping quality
- first-of-pair read overlaps mate
- second-of-pair read overlaps mate
- unpaired, but otherwise perfect read
- merge two read stats instances
19/03/14 09:26:36 INFO util.Utils: Successfully started service 'sparkDriver' on port 59520.
19/03/14 09:26:36 INFO slf4j.Slf4jLogger: Slf4jLogger started
19/03/14 09:26:36 INFO Remoting: Starting remoting
19/03/14 09:26:36 INFO Remoting: Remoting started; listening on addresses :[akka.tcp://sparkDriverActorSystem@localhost:59521]
19/03/14 09:26:36 INFO util.Utils: Successfully started service 'sparkDriverActorSystem' on port 59521.
19/03/14 09:26:36 INFO spark.SparkEnv: Registering MapOutputTracker
19/03/14 09:26:36 INFO spark.SparkEnv: Registering BlockManagerMaster
19/03/14 09:26:36 INFO storage.DiskBlockManager: Created local directory at /tmp/blockmgr-6816edd6-4bc8-48fd-81b5-297d53ea4629
19/03/14 09:26:36 INFO storage.MemoryStore: MemoryStore started with capacity 521.6 MB
19/03/14 09:26:36 INFO spark.SparkEnv: Registering OutputCommitCoordinator
19/03/14 09:26:36 INFO executor.Executor: Starting executor ID driver on host localhost
19/03/14 09:26:36 INFO util.Utils: Successfully started service 'org.apache.spark.network.netty.NettyBlockTransferService' on port 36872.
19/03/14 09:26:36 INFO netty.NettyBlockTransferService: Server created on 36872
19/03/14 09:26:36 INFO storage.BlockManagerMaster: Trying to register BlockManager
19/03/14 09:26:36 INFO storage.BlockManagerMasterEndpoint: Registering block manager localhost:36872 with 521.6 MB RAM, BlockManagerId(driver, localhost, 36872)
19/03/14 09:26:36 INFO storage.BlockManagerMaster: Registered BlockManager
19/03/14 09:26:36 INFO spark.SparkContext: Starting job: reduce at ReadStats.scala:253
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Got job 0 (reduce at ReadStats.scala:253) with 4 output partitions
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Final stage: ResultStage 0 (reduce at ReadStats.scala:253)
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Parents of final stage: List()
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Missing parents: List()
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Submitting ResultStage 0 (MapPartitionsRDD[1] at map at ReadStats.scala:252), which has no missing parents
19/03/14 09:26:36 INFO storage.MemoryStore: Block broadcast_0 stored as values in memory (estimated size 2.2 KB, free 2.2 KB)
19/03/14 09:26:36 INFO storage.MemoryStore: Block broadcast_0_piece0 stored as bytes in memory (estimated size 1430.0 B, free 3.6 KB)
19/03/14 09:26:36 INFO storage.BlockManagerInfo: Added broadcast_0_piece0 in memory on localhost:36872 (size: 1430.0 B, free: 521.6 MB)
19/03/14 09:26:36 INFO spark.SparkContext: Created broadcast 0 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ResultStage 0 (MapPartitionsRDD[1] at map at ReadStats.scala:252)
19/03/14 09:26:36 INFO scheduler.TaskSchedulerImpl: Adding task set 0.0 with 4 tasks
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 0.0 (TID 0, localhost, partition 0,PROCESS_LOCAL, 2290 bytes)
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 0.0 (TID 1, localhost, partition 1,PROCESS_LOCAL, 2422 bytes)
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 0.0 (TID 2, localhost, partition 2,PROCESS_LOCAL, 2290 bytes)
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 0.0 (TID 3, localhost, partition 3,PROCESS_LOCAL, 2422 bytes)
19/03/14 09:26:36 INFO executor.Executor: Running task 0.0 in stage 0.0 (TID 0)
19/03/14 09:26:36 INFO executor.Executor: Running task 1.0 in stage 0.0 (TID 1)
19/03/14 09:26:36 INFO executor.Executor: Running task 2.0 in stage 0.0 (TID 2)
19/03/14 09:26:36 INFO executor.Executor: Running task 3.0 in stage 0.0 (TID 3)
19/03/14 09:26:36 INFO executor.Executor: Finished task 0.0 in stage 0.0 (TID 0). 952 bytes result sent to driver
19/03/14 09:26:36 INFO executor.Executor: Finished task 1.0 in stage 0.0 (TID 1). 952 bytes result sent to driver
19/03/14 09:26:36 INFO executor.Executor: Finished task 3.0 in stage 0.0 (TID 3). 952 bytes result sent to driver
19/03/14 09:26:36 INFO executor.Executor: Finished task 2.0 in stage 0.0 (TID 2). 952 bytes result sent to driver
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 0.0 (TID 0) in 19 ms on localhost (1/4)
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 0.0 (TID 3) in 13 ms on localhost (2/4)
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 0.0 (TID 1) in 18 ms on localhost (3/4)
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 0.0 (TID 2) in 16 ms on localhost (4/4)
19/03/14 09:26:36 INFO scheduler.DAGScheduler: ResultStage 0 (reduce at ReadStats.scala:253) finished in 0.020 s
19/03/14 09:26:36 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 0.0, whose tasks have all completed, from pool 
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Job 0 finished: reduce at ReadStats.scala:253, took 0.027064 s
19/03/14 09:26:36 INFO spark.MapOutputTrackerMasterEndpoint: MapOutputTrackerMasterEndpoint stopped!
19/03/14 09:26:36 INFO storage.MemoryStore: MemoryStore cleared
19/03/14 09:26:36 INFO storage.BlockManager: BlockManager stopped
19/03/14 09:26:36 INFO storage.BlockManagerMaster: BlockManagerMaster stopped
19/03/14 09:26:36 INFO scheduler.OutputCommitCoordinator$OutputCommitCoordinatorEndpoint: OutputCommitCoordinator stopped!
19/03/14 09:26:36 INFO remote.RemoteActorRefProvider$RemotingTerminator: Shutting down remote daemon.
19/03/14 09:26:36 INFO remote.RemoteActorRefProvider$RemotingTerminator: Remote daemon shut down; proceeding with flushing remote transports.
19/03/14 09:26:36 INFO spark.SparkContext: Successfully stopped SparkContext
- run an aggregate across all reads
19/03/14 09:26:36 INFO remote.RemoteActorRefProvider$RemotingTerminator: Remoting shut down.
19/03/14 09:26:36 WARN rna.RNASeqAlignmentCounts: Found unknown feature type random. Ignoring.
19/03/14 09:26:36 WARN rna.RNASeqAlignmentCounts: Found unknown feature type SO:0000110. Ignoring.
19/03/14 09:26:36 INFO spark.SparkContext: Running Spark version 1.6.1
19/03/14 09:26:36 INFO spark.SecurityManager: Changing view acls to: jenkins
19/03/14 09:26:36 INFO spark.SecurityManager: Changing modify acls to: jenkins
19/03/14 09:26:36 INFO spark.SecurityManager: SecurityManager: authentication disabled; ui acls disabled; users with view permissions: Set(jenkins); users with modify permissions: Set(jenkins)
RNASeqAlignmentCountsSuite:
- should get an intergenic count if we pass a None
- should get an intragenic count if we pass a transcript
- should get an exonic count if we pass an exon
- should get an intronic count if we pass an intron
- should get an rRNA count if we pass an rRNA site
- should get nothing if we pass a random feature
- should get an intragenic count if we pass an SO transcript
- should get an exonic count if we pass an SO exon
- should get an intronic count if we pass an SO intron
- should get an rRNA count if we pass an SO rRNA site
- should get nothing if we pass a random SO feature
19/03/14 09:26:36 INFO util.Utils: Successfully started service 'sparkDriver' on port 58543.
19/03/14 09:26:36 INFO slf4j.Slf4jLogger: Slf4jLogger started
19/03/14 09:26:36 INFO Remoting: Starting remoting
19/03/14 09:26:36 INFO Remoting: Remoting started; listening on addresses :[akka.tcp://sparkDriverActorSystem@localhost:58544]
19/03/14 09:26:36 INFO util.Utils: Successfully started service 'sparkDriverActorSystem' on port 58544.
19/03/14 09:26:36 INFO spark.SparkEnv: Registering MapOutputTracker
19/03/14 09:26:36 INFO spark.SparkEnv: Registering BlockManagerMaster
19/03/14 09:26:36 INFO storage.DiskBlockManager: Created local directory at /tmp/blockmgr-f14d560c-5a43-4705-9e3d-16f94d50f508
19/03/14 09:26:36 INFO storage.MemoryStore: MemoryStore started with capacity 521.6 MB
19/03/14 09:26:36 INFO spark.SparkEnv: Registering OutputCommitCoordinator
19/03/14 09:26:36 INFO executor.Executor: Starting executor ID driver on host localhost
19/03/14 09:26:36 INFO util.Utils: Successfully started service 'org.apache.spark.network.netty.NettyBlockTransferService' on port 36194.
19/03/14 09:26:36 INFO netty.NettyBlockTransferService: Server created on 36194
19/03/14 09:26:36 INFO storage.BlockManagerMaster: Trying to register BlockManager
19/03/14 09:26:36 INFO storage.BlockManagerMasterEndpoint: Registering block manager localhost:36194 with 521.6 MB RAM, BlockManagerId(driver, localhost, 36194)
19/03/14 09:26:36 INFO storage.BlockManagerMaster: Registered BlockManager
19/03/14 09:26:36 INFO spark.SparkContext: Starting job: reduce at RNASeqAlignmentCounts.scala:72
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Got job 0 (reduce at RNASeqAlignmentCounts.scala:72) with 4 output partitions
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Final stage: ResultStage 0 (reduce at RNASeqAlignmentCounts.scala:72)
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Parents of final stage: List()
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Missing parents: List()
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Submitting ResultStage 0 (MapPartitionsRDD[1] at flatMap at RNASeqAlignmentCounts.scala:71), which has no missing parents
19/03/14 09:26:36 INFO storage.MemoryStore: Block broadcast_0 stored as values in memory (estimated size 2032.0 B, free 2032.0 B)
19/03/14 09:26:36 INFO storage.MemoryStore: Block broadcast_0_piece0 stored as bytes in memory (estimated size 1266.0 B, free 3.2 KB)
19/03/14 09:26:36 INFO storage.BlockManagerInfo: Added broadcast_0_piece0 in memory on localhost:36194 (size: 1266.0 B, free: 521.6 MB)
19/03/14 09:26:36 INFO spark.SparkContext: Created broadcast 0 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:36 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ResultStage 0 (MapPartitionsRDD[1] at flatMap at RNASeqAlignmentCounts.scala:71)
19/03/14 09:26:36 INFO scheduler.TaskSchedulerImpl: Adding task set 0.0 with 4 tasks
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 0.0 (TID 0, localhost, partition 0,PROCESS_LOCAL, 2014 bytes)
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 0.0 (TID 1, localhost, partition 1,PROCESS_LOCAL, 2054 bytes)
19/03/14 09:26:36 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 0.0 (TID 2, localhost, partition 2,PROCESS_LOCAL, 2067 bytes)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 0.0 (TID 3, localhost, partition 3,PROCESS_LOCAL, 2087 bytes)
19/03/14 09:26:37 INFO executor.Executor: Running task 0.0 in stage 0.0 (TID 0)
19/03/14 09:26:37 INFO executor.Executor: Running task 1.0 in stage 0.0 (TID 1)
19/03/14 09:26:37 INFO executor.Executor: Running task 2.0 in stage 0.0 (TID 2)
19/03/14 09:26:37 INFO executor.Executor: Running task 3.0 in stage 0.0 (TID 3)
19/03/14 09:26:37 INFO executor.Executor: Finished task 0.0 in stage 0.0 (TID 0). 937 bytes result sent to driver
19/03/14 09:26:37 INFO executor.Executor: Finished task 1.0 in stage 0.0 (TID 1). 937 bytes result sent to driver
19/03/14 09:26:37 INFO executor.Executor: Finished task 2.0 in stage 0.0 (TID 2). 937 bytes result sent to driver
19/03/14 09:26:37 INFO executor.Executor: Finished task 3.0 in stage 0.0 (TID 3). 937 bytes result sent to driver
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 0.0 (TID 0) in 12 ms on localhost (1/4)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 0.0 (TID 1) in 12 ms on localhost (2/4)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 0.0 (TID 2) in 13 ms on localhost (3/4)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 0.0 (TID 3) in 11 ms on localhost (4/4)
19/03/14 09:26:37 INFO scheduler.DAGScheduler: ResultStage 0 (reduce at RNASeqAlignmentCounts.scala:72) finished in 0.016 s
19/03/14 09:26:37 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 0.0, whose tasks have all completed, from pool 
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Job 0 finished: reduce at RNASeqAlignmentCounts.scala:72, took 0.020680 s
19/03/14 09:26:37 INFO spark.MapOutputTrackerMasterEndpoint: MapOutputTrackerMasterEndpoint stopped!
19/03/14 09:26:37 INFO storage.MemoryStore: MemoryStore cleared
19/03/14 09:26:37 INFO storage.BlockManager: BlockManager stopped
19/03/14 09:26:37 INFO storage.BlockManagerMaster: BlockManagerMaster stopped
19/03/14 09:26:37 INFO scheduler.OutputCommitCoordinator$OutputCommitCoordinatorEndpoint: OutputCommitCoordinator stopped!
19/03/14 09:26:37 INFO remote.RemoteActorRefProvider$RemotingTerminator: Shutting down remote daemon.
19/03/14 09:26:37 INFO remote.RemoteActorRefProvider$RemotingTerminator: Remote daemon shut down; proceeding with flushing remote transports.
19/03/14 09:26:37 INFO spark.SparkContext: Successfully stopped SparkContext
- run aggregate
19/03/14 09:26:37 INFO spark.SparkContext: Running Spark version 1.6.1
19/03/14 09:26:37 INFO remote.RemoteActorRefProvider$RemotingTerminator: Remoting shut down.
19/03/14 09:26:37 INFO spark.SecurityManager: Changing view acls to: jenkins
19/03/14 09:26:37 INFO spark.SecurityManager: Changing modify acls to: jenkins
19/03/14 09:26:37 INFO spark.SecurityManager: SecurityManager: authentication disabled; ui acls disabled; users with view permissions: Set(jenkins); users with modify permissions: Set(jenkins)
GenotypeConcordanceRDDFunctionsSuite:
19/03/14 09:26:37 INFO util.Utils: Successfully started service 'sparkDriver' on port 58442.
19/03/14 09:26:37 INFO slf4j.Slf4jLogger: Slf4jLogger started
19/03/14 09:26:37 INFO Remoting: Starting remoting
19/03/14 09:26:37 INFO Remoting: Remoting started; listening on addresses :[akka.tcp://sparkDriverActorSystem@localhost:58443]
19/03/14 09:26:37 INFO util.Utils: Successfully started service 'sparkDriverActorSystem' on port 58443.
19/03/14 09:26:37 INFO spark.SparkEnv: Registering MapOutputTracker
19/03/14 09:26:37 INFO spark.SparkEnv: Registering BlockManagerMaster
19/03/14 09:26:37 INFO storage.DiskBlockManager: Created local directory at /tmp/blockmgr-3cda4ba6-7326-425e-829c-326536b4b675
19/03/14 09:26:37 INFO storage.MemoryStore: MemoryStore started with capacity 521.6 MB
19/03/14 09:26:37 INFO spark.SparkEnv: Registering OutputCommitCoordinator
19/03/14 09:26:37 INFO executor.Executor: Starting executor ID driver on host localhost
19/03/14 09:26:37 INFO util.Utils: Successfully started service 'org.apache.spark.network.netty.NettyBlockTransferService' on port 34330.
19/03/14 09:26:37 INFO netty.NettyBlockTransferService: Server created on 34330
19/03/14 09:26:37 INFO storage.BlockManagerMaster: Trying to register BlockManager
19/03/14 09:26:37 INFO storage.BlockManagerMasterEndpoint: Registering block manager localhost:34330 with 521.6 MB RAM, BlockManagerId(driver, localhost, 34330)
19/03/14 09:26:37 INFO storage.BlockManagerMaster: Registered BlockManager
19/03/14 09:26:37 INFO spark.SparkContext: Starting job: collectAsMap at GenotypeConcordanceRDDFunctionsSuite.scala:42
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Registering RDD 5 (keyBy at GenotypeConcordanceRDDFunctions.scala:51)
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Registering RDD 3 (keyBy at GenotypeConcordanceRDDFunctions.scala:49)
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Registering RDD 5 (keyBy at GenotypeConcordanceRDDFunctions.scala:51)
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Registering RDD 12 (union at GenotypeConcordanceRDDFunctions.scala:65)
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Got job 0 (collectAsMap at GenotypeConcordanceRDDFunctionsSuite.scala:42) with 8 output partitions
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Final stage: ResultStage 4 (collectAsMap at GenotypeConcordanceRDDFunctionsSuite.scala:42)
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 3)
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Missing parents: List(ShuffleMapStage 3)
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 0 (MapPartitionsRDD[5] at keyBy at GenotypeConcordanceRDDFunctions.scala:51), which has no missing parents
19/03/14 09:26:37 INFO storage.MemoryStore: Block broadcast_0 stored as values in memory (estimated size 2.8 KB, free 2.8 KB)
19/03/14 09:26:37 INFO storage.MemoryStore: Block broadcast_0_piece0 stored as bytes in memory (estimated size 1705.0 B, free 4.5 KB)
19/03/14 09:26:37 INFO storage.BlockManagerInfo: Added broadcast_0_piece0 in memory on localhost:34330 (size: 1705.0 B, free: 521.6 MB)
19/03/14 09:26:37 INFO spark.SparkContext: Created broadcast 0 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 0 (MapPartitionsRDD[5] at keyBy at GenotypeConcordanceRDDFunctions.scala:51)
19/03/14 09:26:37 INFO scheduler.TaskSchedulerImpl: Adding task set 0.0 with 4 tasks
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 1 (MapPartitionsRDD[3] at keyBy at GenotypeConcordanceRDDFunctions.scala:49), which has no missing parents
19/03/14 09:26:37 INFO storage.MemoryStore: Block broadcast_1 stored as values in memory (estimated size 2.8 KB, free 7.4 KB)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 0.0 (TID 0, localhost, partition 0,PROCESS_LOCAL, 2005 bytes)
19/03/14 09:26:37 INFO storage.MemoryStore: Block broadcast_1_piece0 stored as bytes in memory (estimated size 1709.0 B, free 9.0 KB)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 0.0 (TID 1, localhost, partition 1,PROCESS_LOCAL, 2005 bytes)
19/03/14 09:26:37 INFO storage.BlockManagerInfo: Added broadcast_1_piece0 in memory on localhost:34330 (size: 1709.0 B, free: 521.6 MB)
19/03/14 09:26:37 INFO spark.SparkContext: Created broadcast 1 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 1 (MapPartitionsRDD[3] at keyBy at GenotypeConcordanceRDDFunctions.scala:49)
19/03/14 09:26:37 INFO scheduler.TaskSchedulerImpl: Adding task set 1.0 with 4 tasks
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 0.0 (TID 2, localhost, partition 2,PROCESS_LOCAL, 2005 bytes)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 0.0 (TID 3, localhost, partition 3,PROCESS_LOCAL, 2072 bytes)
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 2 (MapPartitionsRDD[5] at keyBy at GenotypeConcordanceRDDFunctions.scala:51), which has no missing parents
19/03/14 09:26:37 INFO executor.Executor: Running task 0.0 in stage 0.0 (TID 0)
19/03/14 09:26:37 INFO executor.Executor: Running task 1.0 in stage 0.0 (TID 1)
19/03/14 09:26:37 INFO storage.MemoryStore: Block broadcast_2 stored as values in memory (estimated size 2.8 KB, free 11.9 KB)
19/03/14 09:26:37 INFO executor.Executor: Running task 2.0 in stage 0.0 (TID 2)
19/03/14 09:26:37 INFO executor.Executor: Running task 3.0 in stage 0.0 (TID 3)
19/03/14 09:26:37 INFO storage.MemoryStore: Block broadcast_2_piece0 stored as bytes in memory (estimated size 1676.0 B, free 13.5 KB)
19/03/14 09:26:37 INFO storage.BlockManagerInfo: Added broadcast_2_piece0 in memory on localhost:34330 (size: 1676.0 B, free: 521.6 MB)
19/03/14 09:26:37 INFO spark.SparkContext: Created broadcast 2 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 2 (MapPartitionsRDD[5] at keyBy at GenotypeConcordanceRDDFunctions.scala:51)
19/03/14 09:26:37 INFO scheduler.TaskSchedulerImpl: Adding task set 2.0 with 4 tasks
19/03/14 09:26:37 INFO executor.Executor: Finished task 0.0 in stage 0.0 (TID 0). 1090 bytes result sent to driver
19/03/14 09:26:37 INFO executor.Executor: Finished task 1.0 in stage 0.0 (TID 1). 1090 bytes result sent to driver
19/03/14 09:26:37 INFO executor.Executor: Finished task 2.0 in stage 0.0 (TID 2). 1090 bytes result sent to driver
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 1.0 (TID 4, localhost, partition 0,PROCESS_LOCAL, 2005 bytes)
19/03/14 09:26:37 INFO executor.Executor: Running task 0.0 in stage 1.0 (TID 4)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 1.0 (TID 5, localhost, partition 1,PROCESS_LOCAL, 2005 bytes)
19/03/14 09:26:37 INFO executor.Executor: Running task 1.0 in stage 1.0 (TID 5)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 0.0 (TID 0) in 21 ms on localhost (1/4)
19/03/14 09:26:37 INFO executor.Executor: Finished task 0.0 in stage 1.0 (TID 4). 1090 bytes result sent to driver
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 1.0 (TID 6, localhost, partition 2,PROCESS_LOCAL, 2005 bytes)
19/03/14 09:26:37 INFO executor.Executor: Running task 2.0 in stage 1.0 (TID 6)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 0.0 (TID 1) in 21 ms on localhost (2/4)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 1.0 (TID 7, localhost, partition 3,PROCESS_LOCAL, 2072 bytes)
19/03/14 09:26:37 INFO executor.Executor: Finished task 1.0 in stage 1.0 (TID 5). 1090 bytes result sent to driver
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 0.0 (TID 2) in 23 ms on localhost (3/4)
19/03/14 09:26:37 INFO executor.Executor: Running task 3.0 in stage 1.0 (TID 7)
19/03/14 09:26:37 INFO executor.Executor: Finished task 2.0 in stage 1.0 (TID 6). 1090 bytes result sent to driver
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 2.0 (TID 8, localhost, partition 0,PROCESS_LOCAL, 2005 bytes)
19/03/14 09:26:37 INFO executor.Executor: Running task 0.0 in stage 2.0 (TID 8)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 1.0 (TID 4) in 12 ms on localhost (1/4)
19/03/14 09:26:37 INFO executor.Executor: Finished task 3.0 in stage 0.0 (TID 3). 1090 bytes result sent to driver
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 2.0 (TID 9, localhost, partition 1,PROCESS_LOCAL, 2005 bytes)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 1.0 (TID 5) in 10 ms on localhost (2/4)
19/03/14 09:26:37 INFO executor.Executor: Running task 1.0 in stage 2.0 (TID 9)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 2.0 (TID 10, localhost, partition 2,PROCESS_LOCAL, 2005 bytes)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 1.0 (TID 6) in 9 ms on localhost (3/4)
19/03/14 09:26:37 INFO executor.Executor: Running task 2.0 in stage 2.0 (TID 10)
19/03/14 09:26:37 INFO executor.Executor: Finished task 0.0 in stage 2.0 (TID 8). 1090 bytes result sent to driver
19/03/14 09:26:37 INFO executor.Executor: Finished task 1.0 in stage 2.0 (TID 9). 1090 bytes result sent to driver
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 2.0 (TID 11, localhost, partition 3,PROCESS_LOCAL, 2072 bytes)
19/03/14 09:26:37 INFO executor.Executor: Finished task 2.0 in stage 2.0 (TID 10). 1090 bytes result sent to driver
19/03/14 09:26:37 INFO executor.Executor: Running task 3.0 in stage 2.0 (TID 11)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 0.0 (TID 3) in 30 ms on localhost (4/4)
19/03/14 09:26:37 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 0.0, whose tasks have all completed, from pool 
19/03/14 09:26:37 INFO scheduler.DAGScheduler: ShuffleMapStage 0 (keyBy at GenotypeConcordanceRDDFunctions.scala:51) finished in 0.035 s
19/03/14 09:26:37 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:37 INFO scheduler.DAGScheduler: running: Set(ShuffleMapStage 1, ShuffleMapStage 2)
19/03/14 09:26:37 INFO scheduler.DAGScheduler: waiting: Set(ShuffleMapStage 3, ResultStage 4)
19/03/14 09:26:37 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 2.0 (TID 8) in 10 ms on localhost (1/4)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 2.0 (TID 9) in 8 ms on localhost (2/4)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 2.0 (TID 10) in 6 ms on localhost (3/4)
19/03/14 09:26:37 INFO executor.Executor: Finished task 3.0 in stage 1.0 (TID 7). 1090 bytes result sent to driver
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 1.0 (TID 7) in 15 ms on localhost (4/4)
19/03/14 09:26:37 INFO scheduler.DAGScheduler: ShuffleMapStage 1 (keyBy at GenotypeConcordanceRDDFunctions.scala:49) finished in 0.033 s
19/03/14 09:26:37 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 1.0, whose tasks have all completed, from pool 
19/03/14 09:26:37 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:37 INFO scheduler.DAGScheduler: running: Set(ShuffleMapStage 2)
19/03/14 09:26:37 INFO scheduler.DAGScheduler: waiting: Set(ShuffleMapStage 3, ResultStage 4)
19/03/14 09:26:37 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:37 INFO executor.Executor: Finished task 3.0 in stage 2.0 (TID 11). 1090 bytes result sent to driver
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 2.0 (TID 11) in 11 ms on localhost (4/4)
19/03/14 09:26:37 INFO scheduler.DAGScheduler: ShuffleMapStage 2 (keyBy at GenotypeConcordanceRDDFunctions.scala:51) finished in 0.034 s
19/03/14 09:26:37 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 2.0, whose tasks have all completed, from pool 
19/03/14 09:26:37 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:37 INFO scheduler.DAGScheduler: running: Set()
19/03/14 09:26:37 INFO scheduler.DAGScheduler: waiting: Set(ShuffleMapStage 3, ResultStage 4)
19/03/14 09:26:37 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 3 (UnionRDD[12] at union at GenotypeConcordanceRDDFunctions.scala:65), which has no missing parents
19/03/14 09:26:37 INFO storage.MemoryStore: Block broadcast_3 stored as values in memory (estimated size 4.7 KB, free 18.2 KB)
19/03/14 09:26:37 INFO storage.MemoryStore: Block broadcast_3_piece0 stored as bytes in memory (estimated size 2.4 KB, free 20.6 KB)
19/03/14 09:26:37 INFO storage.BlockManagerInfo: Added broadcast_3_piece0 in memory on localhost:34330 (size: 2.4 KB, free: 521.6 MB)
19/03/14 09:26:37 INFO spark.SparkContext: Created broadcast 3 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Submitting 8 missing tasks from ShuffleMapStage 3 (UnionRDD[12] at union at GenotypeConcordanceRDDFunctions.scala:65)
19/03/14 09:26:37 INFO scheduler.TaskSchedulerImpl: Adding task set 3.0 with 8 tasks
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 3.0 (TID 12, localhost, partition 0,PROCESS_LOCAL, 2065 bytes)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 3.0 (TID 13, localhost, partition 1,PROCESS_LOCAL, 2065 bytes)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 3.0 (TID 14, localhost, partition 2,PROCESS_LOCAL, 2065 bytes)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 3.0 (TID 15, localhost, partition 3,PROCESS_LOCAL, 2065 bytes)
19/03/14 09:26:37 INFO executor.Executor: Running task 2.0 in stage 3.0 (TID 14)
19/03/14 09:26:37 INFO executor.Executor: Running task 3.0 in stage 3.0 (TID 15)
19/03/14 09:26:37 INFO executor.Executor: Running task 1.0 in stage 3.0 (TID 13)
19/03/14 09:26:37 INFO executor.Executor: Running task 0.0 in stage 3.0 (TID 12)
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 1 ms
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 1 ms
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 1 ms
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:37 INFO executor.Executor: Finished task 1.0 in stage 3.0 (TID 13). 1310 bytes result sent to driver
19/03/14 09:26:37 INFO executor.Executor: Finished task 0.0 in stage 3.0 (TID 12). 1310 bytes result sent to driver
19/03/14 09:26:37 INFO executor.Executor: Finished task 2.0 in stage 3.0 (TID 14). 1310 bytes result sent to driver
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Starting task 4.0 in stage 3.0 (TID 16, localhost, partition 4,PROCESS_LOCAL, 2173 bytes)
19/03/14 09:26:37 INFO executor.Executor: Running task 4.0 in stage 3.0 (TID 16)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Starting task 5.0 in stage 3.0 (TID 17, localhost, partition 5,PROCESS_LOCAL, 2173 bytes)
19/03/14 09:26:37 INFO executor.Executor: Running task 5.0 in stage 3.0 (TID 17)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Starting task 6.0 in stage 3.0 (TID 18, localhost, partition 6,PROCESS_LOCAL, 2173 bytes)
19/03/14 09:26:37 INFO executor.Executor: Running task 6.0 in stage 3.0 (TID 18)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 3.0 (TID 13) in 14 ms on localhost (1/8)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 3.0 (TID 12) in 16 ms on localhost (2/8)
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 3.0 (TID 14) in 15 ms on localhost (3/8)
19/03/14 09:26:37 INFO executor.Executor: Finished task 3.0 in stage 3.0 (TID 15). 1310 bytes result sent to driver
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Starting task 7.0 in stage 3.0 (TID 19, localhost, partition 7,PROCESS_LOCAL, 2173 bytes)
19/03/14 09:26:37 INFO executor.Executor: Running task 7.0 in stage 3.0 (TID 19)
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 1 ms
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 3.0 (TID 15) in 18 ms on localhost (4/8)
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:37 INFO executor.Executor: Finished task 6.0 in stage 3.0 (TID 18). 1310 bytes result sent to driver
19/03/14 09:26:37 INFO executor.Executor: Finished task 4.0 in stage 3.0 (TID 16). 1310 bytes result sent to driver
19/03/14 09:26:37 INFO executor.Executor: Finished task 5.0 in stage 3.0 (TID 17). 1310 bytes result sent to driver
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 6.0 in stage 3.0 (TID 18) in 12 ms on localhost (5/8)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 4.0 in stage 3.0 (TID 16) in 15 ms on localhost (6/8)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 5.0 in stage 3.0 (TID 17) in 13 ms on localhost (7/8)
19/03/14 09:26:37 INFO executor.Executor: Finished task 7.0 in stage 3.0 (TID 19). 1310 bytes result sent to driver
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 7.0 in stage 3.0 (TID 19) in 16 ms on localhost (8/8)
19/03/14 09:26:37 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 3.0, whose tasks have all completed, from pool 
19/03/14 09:26:37 INFO scheduler.DAGScheduler: ShuffleMapStage 3 (union at GenotypeConcordanceRDDFunctions.scala:65) finished in 0.034 s
19/03/14 09:26:37 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:37 INFO scheduler.DAGScheduler: running: Set()
19/03/14 09:26:37 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 4)
19/03/14 09:26:37 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Submitting ResultStage 4 (ShuffledRDD[13] at combineByKey at GenotypeConcordanceRDDFunctions.scala:65), which has no missing parents
19/03/14 09:26:37 INFO storage.MemoryStore: Block broadcast_4 stored as values in memory (estimated size 2.6 KB, free 23.1 KB)
19/03/14 09:26:37 INFO storage.MemoryStore: Block broadcast_4_piece0 stored as bytes in memory (estimated size 1474.0 B, free 24.6 KB)
19/03/14 09:26:37 INFO storage.BlockManagerInfo: Added broadcast_4_piece0 in memory on localhost:34330 (size: 1474.0 B, free: 521.6 MB)
19/03/14 09:26:37 INFO spark.SparkContext: Created broadcast 4 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Submitting 8 missing tasks from ResultStage 4 (ShuffledRDD[13] at combineByKey at GenotypeConcordanceRDDFunctions.scala:65)
19/03/14 09:26:37 INFO scheduler.TaskSchedulerImpl: Adding task set 4.0 with 8 tasks
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Starting task 5.0 in stage 4.0 (TID 20, localhost, partition 5,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 4.0 (TID 21, localhost, partition 0,PROCESS_LOCAL, 1894 bytes)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 4.0 (TID 22, localhost, partition 1,PROCESS_LOCAL, 1894 bytes)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 4.0 (TID 23, localhost, partition 2,PROCESS_LOCAL, 1894 bytes)
19/03/14 09:26:37 INFO executor.Executor: Running task 5.0 in stage 4.0 (TID 20)
19/03/14 09:26:37 INFO executor.Executor: Running task 2.0 in stage 4.0 (TID 23)
19/03/14 09:26:37 INFO executor.Executor: Running task 0.0 in stage 4.0 (TID 21)
19/03/14 09:26:37 INFO executor.Executor: Running task 1.0 in stage 4.0 (TID 22)
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Getting 0 non-empty blocks out of 8 blocks
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 8 blocks
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Getting 0 non-empty blocks out of 8 blocks
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Getting 0 non-empty blocks out of 8 blocks
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:37 INFO executor.Executor: Finished task 2.0 in stage 4.0 (TID 23). 1124 bytes result sent to driver
19/03/14 09:26:37 INFO executor.Executor: Finished task 1.0 in stage 4.0 (TID 22). 1124 bytes result sent to driver
19/03/14 09:26:37 INFO executor.Executor: Finished task 0.0 in stage 4.0 (TID 21). 1124 bytes result sent to driver
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 4.0 (TID 24, localhost, partition 3,PROCESS_LOCAL, 1894 bytes)
19/03/14 09:26:37 INFO executor.Executor: Running task 3.0 in stage 4.0 (TID 24)
19/03/14 09:26:37 INFO executor.Executor: Finished task 5.0 in stage 4.0 (TID 20). 1217 bytes result sent to driver
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Starting task 4.0 in stage 4.0 (TID 25, localhost, partition 4,PROCESS_LOCAL, 1894 bytes)
19/03/14 09:26:37 INFO executor.Executor: Running task 4.0 in stage 4.0 (TID 25)
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Getting 0 non-empty blocks out of 8 blocks
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 1 ms
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Starting task 6.0 in stage 4.0 (TID 26, localhost, partition 6,PROCESS_LOCAL, 1894 bytes)
19/03/14 09:26:37 INFO executor.Executor: Running task 6.0 in stage 4.0 (TID 26)
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Getting 0 non-empty blocks out of 8 blocks
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Starting task 7.0 in stage 4.0 (TID 27, localhost, partition 7,PROCESS_LOCAL, 1894 bytes)
19/03/14 09:26:37 INFO executor.Executor: Running task 7.0 in stage 4.0 (TID 27)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 4.0 (TID 23) in 8 ms on localhost (1/8)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 4.0 (TID 22) in 9 ms on localhost (2/8)
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Getting 0 non-empty blocks out of 8 blocks
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Getting 0 non-empty blocks out of 8 blocks
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 5.0 in stage 4.0 (TID 20) in 9 ms on localhost (3/8)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 4.0 (TID 21) in 9 ms on localhost (4/8)
19/03/14 09:26:37 INFO executor.Executor: Finished task 4.0 in stage 4.0 (TID 25). 1124 bytes result sent to driver
19/03/14 09:26:37 INFO executor.Executor: Finished task 3.0 in stage 4.0 (TID 24). 1124 bytes result sent to driver
19/03/14 09:26:37 INFO executor.Executor: Finished task 6.0 in stage 4.0 (TID 26). 1124 bytes result sent to driver
19/03/14 09:26:37 INFO executor.Executor: Finished task 7.0 in stage 4.0 (TID 27). 1124 bytes result sent to driver
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 4.0 in stage 4.0 (TID 25) in 6 ms on localhost (5/8)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 4.0 (TID 24) in 7 ms on localhost (6/8)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 6.0 in stage 4.0 (TID 26) in 6 ms on localhost (7/8)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 7.0 in stage 4.0 (TID 27) in 6 ms on localhost (8/8)
19/03/14 09:26:37 INFO scheduler.DAGScheduler: ResultStage 4 (collectAsMap at GenotypeConcordanceRDDFunctionsSuite.scala:42) finished in 0.015 s
19/03/14 09:26:37 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 4.0, whose tasks have all completed, from pool 
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Job 0 finished: collectAsMap at GenotypeConcordanceRDDFunctionsSuite.scala:42, took 0.120449 s
19/03/14 09:26:37 INFO spark.SparkContext: Starting job: collectAsMap at GenotypeConcordanceRDDFunctionsSuite.scala:50
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Registering RDD 19 (keyBy at GenotypeConcordanceRDDFunctions.scala:51)
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Registering RDD 17 (keyBy at GenotypeConcordanceRDDFunctions.scala:49)
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Registering RDD 19 (keyBy at GenotypeConcordanceRDDFunctions.scala:51)
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Registering RDD 26 (union at GenotypeConcordanceRDDFunctions.scala:65)
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Got job 1 (collectAsMap at GenotypeConcordanceRDDFunctionsSuite.scala:50) with 8 output partitions
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Final stage: ResultStage 9 (collectAsMap at GenotypeConcordanceRDDFunctionsSuite.scala:50)
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 8)
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Missing parents: List(ShuffleMapStage 8)
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 5 (MapPartitionsRDD[19] at keyBy at GenotypeConcordanceRDDFunctions.scala:51), which has no missing parents
19/03/14 09:26:37 INFO storage.MemoryStore: Block broadcast_5 stored as values in memory (estimated size 2.8 KB, free 27.4 KB)
19/03/14 09:26:37 INFO storage.MemoryStore: Block broadcast_5_piece0 stored as bytes in memory (estimated size 1711.0 B, free 29.1 KB)
19/03/14 09:26:37 INFO storage.BlockManagerInfo: Added broadcast_5_piece0 in memory on localhost:34330 (size: 1711.0 B, free: 521.6 MB)
19/03/14 09:26:37 INFO spark.SparkContext: Created broadcast 5 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 5 (MapPartitionsRDD[19] at keyBy at GenotypeConcordanceRDDFunctions.scala:51)
19/03/14 09:26:37 INFO scheduler.TaskSchedulerImpl: Adding task set 5.0 with 4 tasks
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 6 (MapPartitionsRDD[17] at keyBy at GenotypeConcordanceRDDFunctions.scala:49), which has no missing parents
19/03/14 09:26:37 INFO storage.MemoryStore: Block broadcast_6 stored as values in memory (estimated size 2.8 KB, free 31.9 KB)
19/03/14 09:26:37 INFO storage.MemoryStore: Block broadcast_6_piece0 stored as bytes in memory (estimated size 1707.0 B, free 33.6 KB)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 5.0 (TID 28, localhost, partition 0,PROCESS_LOCAL, 2005 bytes)
19/03/14 09:26:37 INFO storage.BlockManagerInfo: Added broadcast_6_piece0 in memory on localhost:34330 (size: 1707.0 B, free: 521.6 MB)
19/03/14 09:26:37 INFO spark.SparkContext: Created broadcast 6 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 6 (MapPartitionsRDD[17] at keyBy at GenotypeConcordanceRDDFunctions.scala:49)
19/03/14 09:26:37 INFO scheduler.TaskSchedulerImpl: Adding task set 6.0 with 4 tasks
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 5.0 (TID 29, localhost, partition 1,PROCESS_LOCAL, 2005 bytes)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 5.0 (TID 30, localhost, partition 2,PROCESS_LOCAL, 2005 bytes)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 5.0 (TID 31, localhost, partition 3,PROCESS_LOCAL, 2072 bytes)
19/03/14 09:26:37 INFO executor.Executor: Running task 0.0 in stage 5.0 (TID 28)
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 7 (MapPartitionsRDD[19] at keyBy at GenotypeConcordanceRDDFunctions.scala:51), which has no missing parents
19/03/14 09:26:37 INFO storage.MemoryStore: Block broadcast_7 stored as values in memory (estimated size 2.8 KB, free 36.4 KB)
19/03/14 09:26:37 INFO executor.Executor: Running task 1.0 in stage 5.0 (TID 29)
19/03/14 09:26:37 INFO executor.Executor: Running task 3.0 in stage 5.0 (TID 31)
19/03/14 09:26:37 INFO executor.Executor: Running task 2.0 in stage 5.0 (TID 30)
19/03/14 09:26:37 INFO storage.MemoryStore: Block broadcast_7_piece0 stored as bytes in memory (estimated size 1680.0 B, free 38.1 KB)
19/03/14 09:26:37 INFO executor.Executor: Finished task 0.0 in stage 5.0 (TID 28). 1090 bytes result sent to driver
19/03/14 09:26:37 INFO storage.BlockManagerInfo: Added broadcast_7_piece0 in memory on localhost:34330 (size: 1680.0 B, free: 521.6 MB)
19/03/14 09:26:37 INFO spark.SparkContext: Created broadcast 7 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:37 INFO storage.BlockManagerInfo: Removed broadcast_4_piece0 on localhost:34330 in memory (size: 1474.0 B, free: 521.6 MB)
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 7 (MapPartitionsRDD[19] at keyBy at GenotypeConcordanceRDDFunctions.scala:51)
19/03/14 09:26:37 INFO scheduler.TaskSchedulerImpl: Adding task set 7.0 with 4 tasks
19/03/14 09:26:37 INFO executor.Executor: Finished task 1.0 in stage 5.0 (TID 29). 1090 bytes result sent to driver
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 6.0 (TID 32, localhost, partition 0,PROCESS_LOCAL, 2005 bytes)
19/03/14 09:26:37 INFO executor.Executor: Finished task 2.0 in stage 5.0 (TID 30). 1090 bytes result sent to driver
19/03/14 09:26:37 INFO spark.ContextCleaner: Cleaned accumulator 187
19/03/14 09:26:37 INFO executor.Executor: Running task 0.0 in stage 6.0 (TID 32)
19/03/14 09:26:37 INFO storage.BlockManagerInfo: Removed broadcast_3_piece0 on localhost:34330 in memory (size: 2.4 KB, free: 521.6 MB)
19/03/14 09:26:37 INFO spark.ContextCleaner: Cleaned accumulator 186
19/03/14 09:26:37 INFO storage.BlockManagerInfo: Removed broadcast_2_piece0 on localhost:34330 in memory (size: 1676.0 B, free: 521.6 MB)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 6.0 (TID 33, localhost, partition 1,PROCESS_LOCAL, 2005 bytes)
19/03/14 09:26:37 INFO spark.ContextCleaner: Cleaned accumulator 185
19/03/14 09:26:37 INFO executor.Executor: Running task 1.0 in stage 6.0 (TID 33)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 5.0 (TID 28) in 40 ms on localhost (1/4)
19/03/14 09:26:37 INFO storage.BlockManagerInfo: Removed broadcast_1_piece0 on localhost:34330 in memory (size: 1709.0 B, free: 521.6 MB)
19/03/14 09:26:37 INFO spark.ContextCleaner: Cleaned accumulator 184
19/03/14 09:26:37 INFO storage.BlockManagerInfo: Removed broadcast_0_piece0 on localhost:34330 in memory (size: 1705.0 B, free: 521.6 MB)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 6.0 (TID 34, localhost, partition 2,PROCESS_LOCAL, 2005 bytes)
19/03/14 09:26:37 INFO spark.ContextCleaner: Cleaned accumulator 183
19/03/14 09:26:37 INFO executor.Executor: Running task 2.0 in stage 6.0 (TID 34)
19/03/14 09:26:37 INFO executor.Executor: Finished task 0.0 in stage 6.0 (TID 32). 1090 bytes result sent to driver
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 5.0 (TID 29) in 38 ms on localhost (2/4)
19/03/14 09:26:37 INFO spark.ContextCleaner: Cleaned shuffle 3
19/03/14 09:26:37 INFO spark.ContextCleaner: Cleaned shuffle 2
19/03/14 09:26:37 INFO spark.ContextCleaner: Cleaned shuffle 1
19/03/14 09:26:37 INFO spark.ContextCleaner: Cleaned shuffle 0
19/03/14 09:26:37 INFO executor.Executor: Finished task 1.0 in stage 6.0 (TID 33). 1090 bytes result sent to driver
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 6.0 (TID 35, localhost, partition 3,PROCESS_LOCAL, 2072 bytes)
19/03/14 09:26:37 INFO executor.Executor: Running task 3.0 in stage 6.0 (TID 35)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 5.0 (TID 30) in 38 ms on localhost (3/4)
19/03/14 09:26:37 INFO executor.Executor: Finished task 2.0 in stage 6.0 (TID 34). 1090 bytes result sent to driver
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 7.0 (TID 36, localhost, partition 0,PROCESS_LOCAL, 2005 bytes)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 6.0 (TID 32) in 10 ms on localhost (1/4)
19/03/14 09:26:37 INFO executor.Executor: Running task 0.0 in stage 7.0 (TID 36)
19/03/14 09:26:37 INFO executor.Executor: Finished task 3.0 in stage 5.0 (TID 31). 1090 bytes result sent to driver
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 7.0 (TID 37, localhost, partition 1,PROCESS_LOCAL, 2005 bytes)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 6.0 (TID 33) in 10 ms on localhost (2/4)
19/03/14 09:26:37 INFO executor.Executor: Running task 1.0 in stage 7.0 (TID 37)
19/03/14 09:26:37 INFO executor.Executor: Finished task 0.0 in stage 7.0 (TID 36). 1090 bytes result sent to driver
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 7.0 (TID 38, localhost, partition 2,PROCESS_LOCAL, 2005 bytes)
19/03/14 09:26:37 INFO executor.Executor: Running task 2.0 in stage 7.0 (TID 38)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 6.0 (TID 34) in 10 ms on localhost (3/4)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 7.0 (TID 39, localhost, partition 3,PROCESS_LOCAL, 2072 bytes)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 5.0 (TID 31) in 43 ms on localhost (4/4)
19/03/14 09:26:37 INFO executor.Executor: Running task 3.0 in stage 7.0 (TID 39)
19/03/14 09:26:37 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 5.0, whose tasks have all completed, from pool 
19/03/14 09:26:37 INFO executor.Executor: Finished task 1.0 in stage 7.0 (TID 37). 1090 bytes result sent to driver
19/03/14 09:26:37 INFO scheduler.DAGScheduler: ShuffleMapStage 5 (keyBy at GenotypeConcordanceRDDFunctions.scala:51) finished in 0.052 s
19/03/14 09:26:37 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:37 INFO scheduler.DAGScheduler: running: Set(ShuffleMapStage 6, ShuffleMapStage 7)
19/03/14 09:26:37 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 9, ShuffleMapStage 8)
19/03/14 09:26:37 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 7.0 (TID 36) in 9 ms on localhost (1/4)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 7.0 (TID 37) in 6 ms on localhost (2/4)
19/03/14 09:26:37 INFO executor.Executor: Finished task 2.0 in stage 7.0 (TID 38). 1090 bytes result sent to driver
19/03/14 09:26:37 INFO executor.Executor: Finished task 3.0 in stage 6.0 (TID 35). 1090 bytes result sent to driver
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 7.0 (TID 38) in 7 ms on localhost (3/4)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 6.0 (TID 35) in 14 ms on localhost (4/4)
19/03/14 09:26:37 INFO scheduler.DAGScheduler: ShuffleMapStage 6 (keyBy at GenotypeConcordanceRDDFunctions.scala:49) finished in 0.041 s
19/03/14 09:26:37 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 6.0, whose tasks have all completed, from pool 
19/03/14 09:26:37 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:37 INFO scheduler.DAGScheduler: running: Set(ShuffleMapStage 7)
19/03/14 09:26:37 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 9, ShuffleMapStage 8)
19/03/14 09:26:37 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:37 INFO executor.Executor: Finished task 3.0 in stage 7.0 (TID 39). 1090 bytes result sent to driver
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 7.0 (TID 39) in 15 ms on localhost (4/4)
19/03/14 09:26:37 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 7.0, whose tasks have all completed, from pool 
19/03/14 09:26:37 INFO scheduler.DAGScheduler: ShuffleMapStage 7 (keyBy at GenotypeConcordanceRDDFunctions.scala:51) finished in 0.027 s
19/03/14 09:26:37 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:37 INFO scheduler.DAGScheduler: running: Set()
19/03/14 09:26:37 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 9, ShuffleMapStage 8)
19/03/14 09:26:37 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 8 (UnionRDD[26] at union at GenotypeConcordanceRDDFunctions.scala:65), which has no missing parents
19/03/14 09:26:37 INFO storage.MemoryStore: Block broadcast_8 stored as values in memory (estimated size 4.7 KB, free 18.2 KB)
19/03/14 09:26:37 INFO storage.MemoryStore: Block broadcast_8_piece0 stored as bytes in memory (estimated size 2.4 KB, free 20.6 KB)
19/03/14 09:26:37 INFO storage.BlockManagerInfo: Added broadcast_8_piece0 in memory on localhost:34330 (size: 2.4 KB, free: 521.6 MB)
19/03/14 09:26:37 INFO spark.SparkContext: Created broadcast 8 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Submitting 8 missing tasks from ShuffleMapStage 8 (UnionRDD[26] at union at GenotypeConcordanceRDDFunctions.scala:65)
19/03/14 09:26:37 INFO scheduler.TaskSchedulerImpl: Adding task set 8.0 with 8 tasks
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 8.0 (TID 40, localhost, partition 0,PROCESS_LOCAL, 2065 bytes)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 8.0 (TID 41, localhost, partition 1,PROCESS_LOCAL, 2065 bytes)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 8.0 (TID 42, localhost, partition 2,PROCESS_LOCAL, 2065 bytes)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 8.0 (TID 43, localhost, partition 3,PROCESS_LOCAL, 2065 bytes)
19/03/14 09:26:37 INFO executor.Executor: Running task 3.0 in stage 8.0 (TID 43)
19/03/14 09:26:37 INFO executor.Executor: Running task 1.0 in stage 8.0 (TID 41)
19/03/14 09:26:37 INFO executor.Executor: Running task 2.0 in stage 8.0 (TID 42)
19/03/14 09:26:37 INFO executor.Executor: Running task 0.0 in stage 8.0 (TID 40)
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:37 INFO executor.Executor: Finished task 0.0 in stage 8.0 (TID 40). 1310 bytes result sent to driver
19/03/14 09:26:37 INFO executor.Executor: Finished task 2.0 in stage 8.0 (TID 42). 1310 bytes result sent to driver
19/03/14 09:26:37 INFO executor.Executor: Finished task 1.0 in stage 8.0 (TID 41). 1310 bytes result sent to driver
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Starting task 4.0 in stage 8.0 (TID 44, localhost, partition 4,PROCESS_LOCAL, 2173 bytes)
19/03/14 09:26:37 INFO executor.Executor: Running task 4.0 in stage 8.0 (TID 44)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Starting task 5.0 in stage 8.0 (TID 45, localhost, partition 5,PROCESS_LOCAL, 2173 bytes)
19/03/14 09:26:37 INFO executor.Executor: Running task 5.0 in stage 8.0 (TID 45)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Starting task 6.0 in stage 8.0 (TID 46, localhost, partition 6,PROCESS_LOCAL, 2173 bytes)
19/03/14 09:26:37 INFO executor.Executor: Running task 6.0 in stage 8.0 (TID 46)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 8.0 (TID 40) in 12 ms on localhost (1/8)
19/03/14 09:26:37 INFO executor.Executor: Finished task 3.0 in stage 8.0 (TID 43). 1310 bytes result sent to driver
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Starting task 7.0 in stage 8.0 (TID 47, localhost, partition 7,PROCESS_LOCAL, 2173 bytes)
19/03/14 09:26:37 INFO executor.Executor: Running task 7.0 in stage 8.0 (TID 47)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 8.0 (TID 41) in 13 ms on localhost (2/8)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 8.0 (TID 42) in 12 ms on localhost (3/8)
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 1 ms
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 8.0 (TID 43) in 14 ms on localhost (4/8)
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:37 INFO executor.Executor: Finished task 6.0 in stage 8.0 (TID 46). 1310 bytes result sent to driver
19/03/14 09:26:37 INFO executor.Executor: Finished task 4.0 in stage 8.0 (TID 44). 1310 bytes result sent to driver
19/03/14 09:26:37 INFO executor.Executor: Finished task 5.0 in stage 8.0 (TID 45). 1310 bytes result sent to driver
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 6.0 in stage 8.0 (TID 46) in 10 ms on localhost (5/8)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 5.0 in stage 8.0 (TID 45) in 11 ms on localhost (6/8)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 4.0 in stage 8.0 (TID 44) in 12 ms on localhost (7/8)
19/03/14 09:26:37 INFO executor.Executor: Finished task 7.0 in stage 8.0 (TID 47). 1310 bytes result sent to driver
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 7.0 in stage 8.0 (TID 47) in 16 ms on localhost (8/8)
19/03/14 09:26:37 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 8.0, whose tasks have all completed, from pool 
19/03/14 09:26:37 INFO scheduler.DAGScheduler: ShuffleMapStage 8 (union at GenotypeConcordanceRDDFunctions.scala:65) finished in 0.028 s
19/03/14 09:26:37 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:37 INFO scheduler.DAGScheduler: running: Set()
19/03/14 09:26:37 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 9)
19/03/14 09:26:37 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Submitting ResultStage 9 (ShuffledRDD[27] at combineByKey at GenotypeConcordanceRDDFunctions.scala:65), which has no missing parents
19/03/14 09:26:37 INFO storage.MemoryStore: Block broadcast_9 stored as values in memory (estimated size 2.6 KB, free 23.1 KB)
19/03/14 09:26:37 INFO storage.MemoryStore: Block broadcast_9_piece0 stored as bytes in memory (estimated size 1475.0 B, free 24.6 KB)
19/03/14 09:26:37 INFO storage.BlockManagerInfo: Added broadcast_9_piece0 in memory on localhost:34330 (size: 1475.0 B, free: 521.6 MB)
19/03/14 09:26:37 INFO spark.SparkContext: Created broadcast 9 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Submitting 8 missing tasks from ResultStage 9 (ShuffledRDD[27] at combineByKey at GenotypeConcordanceRDDFunctions.scala:65)
19/03/14 09:26:37 INFO scheduler.TaskSchedulerImpl: Adding task set 9.0 with 8 tasks
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Starting task 5.0 in stage 9.0 (TID 48, localhost, partition 5,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 9.0 (TID 49, localhost, partition 0,PROCESS_LOCAL, 1894 bytes)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 9.0 (TID 50, localhost, partition 1,PROCESS_LOCAL, 1894 bytes)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 9.0 (TID 51, localhost, partition 2,PROCESS_LOCAL, 1894 bytes)
19/03/14 09:26:37 INFO executor.Executor: Running task 5.0 in stage 9.0 (TID 48)
19/03/14 09:26:37 INFO executor.Executor: Running task 2.0 in stage 9.0 (TID 51)
19/03/14 09:26:37 INFO executor.Executor: Running task 0.0 in stage 9.0 (TID 49)
19/03/14 09:26:37 INFO executor.Executor: Running task 1.0 in stage 9.0 (TID 50)
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 8 blocks
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Getting 0 non-empty blocks out of 8 blocks
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Getting 0 non-empty blocks out of 8 blocks
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Getting 0 non-empty blocks out of 8 blocks
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:37 INFO executor.Executor: Finished task 5.0 in stage 9.0 (TID 48). 1217 bytes result sent to driver
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 9.0 (TID 52, localhost, partition 3,PROCESS_LOCAL, 1894 bytes)
19/03/14 09:26:37 INFO executor.Executor: Running task 3.0 in stage 9.0 (TID 52)
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Getting 0 non-empty blocks out of 8 blocks
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 5.0 in stage 9.0 (TID 48) in 9 ms on localhost (1/8)
19/03/14 09:26:37 INFO executor.Executor: Finished task 0.0 in stage 9.0 (TID 49). 1124 bytes result sent to driver
19/03/14 09:26:37 INFO executor.Executor: Finished task 1.0 in stage 9.0 (TID 50). 1124 bytes result sent to driver
19/03/14 09:26:37 INFO executor.Executor: Finished task 2.0 in stage 9.0 (TID 51). 1124 bytes result sent to driver
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Starting task 4.0 in stage 9.0 (TID 53, localhost, partition 4,PROCESS_LOCAL, 1894 bytes)
19/03/14 09:26:37 INFO executor.Executor: Running task 4.0 in stage 9.0 (TID 53)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Starting task 6.0 in stage 9.0 (TID 54, localhost, partition 6,PROCESS_LOCAL, 1894 bytes)
19/03/14 09:26:37 INFO executor.Executor: Running task 6.0 in stage 9.0 (TID 54)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Starting task 7.0 in stage 9.0 (TID 55, localhost, partition 7,PROCESS_LOCAL, 1894 bytes)
19/03/14 09:26:37 INFO executor.Executor: Running task 7.0 in stage 9.0 (TID 55)
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Getting 0 non-empty blocks out of 8 blocks
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Getting 0 non-empty blocks out of 8 blocks
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 9.0 (TID 49) in 11 ms on localhost (2/8)
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Getting 0 non-empty blocks out of 8 blocks
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 9.0 (TID 50) in 10 ms on localhost (3/8)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 9.0 (TID 51) in 11 ms on localhost (4/8)
19/03/14 09:26:37 INFO executor.Executor: Finished task 3.0 in stage 9.0 (TID 52). 1124 bytes result sent to driver
19/03/14 09:26:37 INFO executor.Executor: Finished task 6.0 in stage 9.0 (TID 54). 1124 bytes result sent to driver
19/03/14 09:26:37 INFO executor.Executor: Finished task 7.0 in stage 9.0 (TID 55). 1124 bytes result sent to driver
19/03/14 09:26:37 INFO executor.Executor: Finished task 4.0 in stage 9.0 (TID 53). 1124 bytes result sent to driver
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 9.0 (TID 52) in 8 ms on localhost (5/8)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 6.0 in stage 9.0 (TID 54) in 5 ms on localhost (6/8)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 7.0 in stage 9.0 (TID 55) in 5 ms on localhost (7/8)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 4.0 in stage 9.0 (TID 53) in 6 ms on localhost (8/8)
19/03/14 09:26:37 INFO scheduler.DAGScheduler: ResultStage 9 (collectAsMap at GenotypeConcordanceRDDFunctionsSuite.scala:50) finished in 0.016 s
19/03/14 09:26:37 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 9.0, whose tasks have all completed, from pool 
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Job 1 finished: collectAsMap at GenotypeConcordanceRDDFunctionsSuite.scala:50, took 0.128585 s
19/03/14 09:26:37 INFO spark.MapOutputTrackerMasterEndpoint: MapOutputTrackerMasterEndpoint stopped!
19/03/14 09:26:37 INFO storage.MemoryStore: MemoryStore cleared
19/03/14 09:26:37 INFO storage.BlockManager: BlockManager stopped
19/03/14 09:26:37 INFO storage.BlockManagerMaster: BlockManagerMaster stopped
19/03/14 09:26:37 INFO scheduler.OutputCommitCoordinator$OutputCommitCoordinatorEndpoint: OutputCommitCoordinator stopped!
19/03/14 09:26:37 INFO remote.RemoteActorRefProvider$RemotingTerminator: Shutting down remote daemon.
19/03/14 09:26:37 INFO remote.RemoteActorRefProvider$RemotingTerminator: Remote daemon shut down; proceeding with flushing remote transports.
19/03/14 09:26:37 INFO spark.SparkContext: Successfully stopped SparkContext
- concordance of identical and non-identical genotypes
19/03/14 09:26:37 INFO spark.SparkContext: Running Spark version 1.6.1
19/03/14 09:26:37 INFO remote.RemoteActorRefProvider$RemotingTerminator: Remoting shut down.
19/03/14 09:26:37 INFO spark.SecurityManager: Changing view acls to: jenkins
19/03/14 09:26:37 INFO spark.SecurityManager: Changing modify acls to: jenkins
19/03/14 09:26:37 INFO spark.SecurityManager: SecurityManager: authentication disabled; ui acls disabled; users with view permissions: Set(jenkins); users with modify permissions: Set(jenkins)
19/03/14 09:26:37 INFO util.Utils: Successfully started service 'sparkDriver' on port 59522.
19/03/14 09:26:37 INFO slf4j.Slf4jLogger: Slf4jLogger started
19/03/14 09:26:37 INFO Remoting: Starting remoting
19/03/14 09:26:37 INFO Remoting: Remoting started; listening on addresses :[akka.tcp://sparkDriverActorSystem@localhost:59523]
19/03/14 09:26:37 INFO util.Utils: Successfully started service 'sparkDriverActorSystem' on port 59523.
19/03/14 09:26:37 INFO spark.SparkEnv: Registering MapOutputTracker
19/03/14 09:26:37 INFO spark.SparkEnv: Registering BlockManagerMaster
19/03/14 09:26:37 INFO storage.DiskBlockManager: Created local directory at /tmp/blockmgr-267e20b5-1ea5-45c5-b97f-27a4d3adfc9b
19/03/14 09:26:37 INFO storage.MemoryStore: MemoryStore started with capacity 522.0 MB
19/03/14 09:26:37 INFO spark.SparkEnv: Registering OutputCommitCoordinator
19/03/14 09:26:37 INFO executor.Executor: Starting executor ID driver on host localhost
19/03/14 09:26:37 INFO util.Utils: Successfully started service 'org.apache.spark.network.netty.NettyBlockTransferService' on port 33927.
19/03/14 09:26:37 INFO netty.NettyBlockTransferService: Server created on 33927
19/03/14 09:26:37 INFO storage.BlockManagerMaster: Trying to register BlockManager
19/03/14 09:26:37 INFO storage.BlockManagerMasterEndpoint: Registering block manager localhost:33927 with 522.0 MB RAM, BlockManagerId(driver, localhost, 33927)
19/03/14 09:26:37 INFO storage.BlockManagerMaster: Registered BlockManager
19/03/14 09:26:37 INFO rdd.ADAMContext: Loading /home/jenkins/workspace/quinine/hadoop.version/1.0.4/label/centos/quinine-core/target/scala-2.10.4/test-classes/small.vcf as VCF, and converting to Genotypes. Projection is ignored.
19/03/14 09:26:37 INFO storage.MemoryStore: Block broadcast_0 stored as values in memory (estimated size 33.1 KB, free 33.1 KB)
19/03/14 09:26:37 INFO storage.MemoryStore: Block broadcast_0_piece0 stored as bytes in memory (estimated size 3.7 KB, free 36.8 KB)
19/03/14 09:26:37 INFO storage.BlockManagerInfo: Added broadcast_0_piece0 in memory on localhost:33927 (size: 3.7 KB, free: 522.0 MB)
19/03/14 09:26:37 INFO spark.SparkContext: Created broadcast 0 from newAPIHadoopFile at ADAMContext.scala:586
19/03/14 09:26:37 INFO input.FileInputFormat: Total input paths to process : 1
19/03/14 09:26:37 INFO spark.SparkContext: Starting job: count at GenotypeConcordanceRDDFunctionsSuite.scala:60
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Got job 0 (count at GenotypeConcordanceRDDFunctionsSuite.scala:60) with 1 output partitions
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Final stage: ResultStage 0 (count at GenotypeConcordanceRDDFunctionsSuite.scala:60)
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Parents of final stage: List()
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Missing parents: List()
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Submitting ResultStage 0 (MapPartitionsRDD[3] at filter at GenotypeConcordanceRDDFunctionsSuite.scala:60), which has no missing parents
19/03/14 09:26:37 INFO storage.MemoryStore: Block broadcast_1 stored as values in memory (estimated size 3.1 KB, free 39.9 KB)
19/03/14 09:26:37 INFO storage.MemoryStore: Block broadcast_1_piece0 stored as bytes in memory (estimated size 1853.0 B, free 41.7 KB)
19/03/14 09:26:37 INFO storage.BlockManagerInfo: Added broadcast_1_piece0 in memory on localhost:33927 (size: 1853.0 B, free: 522.0 MB)
19/03/14 09:26:37 INFO spark.SparkContext: Created broadcast 1 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Submitting 1 missing tasks from ResultStage 0 (MapPartitionsRDD[3] at filter at GenotypeConcordanceRDDFunctionsSuite.scala:60)
19/03/14 09:26:37 INFO scheduler.TaskSchedulerImpl: Adding task set 0.0 with 1 tasks
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 0.0 (TID 0, localhost, partition 0,PROCESS_LOCAL, 2260 bytes)
19/03/14 09:26:37 INFO executor.Executor: Running task 0.0 in stage 0.0 (TID 0)
19/03/14 09:26:37 INFO rdd.NewHadoopRDD: Input split: file:/home/jenkins/workspace/quinine/hadoop.version/1.0.4/label/centos/quinine-core/target/scala-2.10.4/test-classes/small.vcf:0+15651
19/03/14 09:26:37 INFO executor.Executor: Finished task 0.0 in stage 0.0 (TID 0). 2057 bytes result sent to driver
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 0.0 (TID 0) in 53 ms on localhost (1/1)
19/03/14 09:26:37 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 0.0, whose tasks have all completed, from pool 
19/03/14 09:26:37 INFO scheduler.DAGScheduler: ResultStage 0 (count at GenotypeConcordanceRDDFunctionsSuite.scala:60) finished in 0.053 s
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Job 0 finished: count at GenotypeConcordanceRDDFunctionsSuite.scala:60, took 0.059946 s
19/03/14 09:26:37 INFO spark.SparkContext: Starting job: collectAsMap at GenotypeConcordanceRDDFunctionsSuite.scala:62
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Registering RDD 7 (keyBy at GenotypeConcordanceRDDFunctions.scala:51)
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Registering RDD 5 (keyBy at GenotypeConcordanceRDDFunctions.scala:49)
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Registering RDD 7 (keyBy at GenotypeConcordanceRDDFunctions.scala:51)
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Registering RDD 14 (union at GenotypeConcordanceRDDFunctions.scala:65)
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Got job 1 (collectAsMap at GenotypeConcordanceRDDFunctionsSuite.scala:62) with 2 output partitions
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Final stage: ResultStage 5 (collectAsMap at GenotypeConcordanceRDDFunctionsSuite.scala:62)
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 4)
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Missing parents: List(ShuffleMapStage 4)
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 1 (MapPartitionsRDD[7] at keyBy at GenotypeConcordanceRDDFunctions.scala:51), which has no missing parents
19/03/14 09:26:37 INFO storage.MemoryStore: Block broadcast_2 stored as values in memory (estimated size 4.1 KB, free 45.8 KB)
19/03/14 09:26:37 INFO storage.MemoryStore: Block broadcast_2_piece0 stored as bytes in memory (estimated size 2.3 KB, free 48.1 KB)
19/03/14 09:26:37 INFO storage.BlockManagerInfo: Added broadcast_2_piece0 in memory on localhost:33927 (size: 2.3 KB, free: 522.0 MB)
19/03/14 09:26:37 INFO spark.SparkContext: Created broadcast 2 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Submitting 1 missing tasks from ShuffleMapStage 1 (MapPartitionsRDD[7] at keyBy at GenotypeConcordanceRDDFunctions.scala:51)
19/03/14 09:26:37 INFO scheduler.TaskSchedulerImpl: Adding task set 1.0 with 1 tasks
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 2 (MapPartitionsRDD[5] at keyBy at GenotypeConcordanceRDDFunctions.scala:49), which has no missing parents
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 1.0 (TID 1, localhost, partition 0,PROCESS_LOCAL, 2249 bytes)
19/03/14 09:26:37 INFO executor.Executor: Running task 0.0 in stage 1.0 (TID 1)
19/03/14 09:26:37 INFO storage.MemoryStore: Block broadcast_3 stored as values in memory (estimated size 4.1 KB, free 52.2 KB)
19/03/14 09:26:37 INFO rdd.NewHadoopRDD: Input split: file:/home/jenkins/workspace/quinine/hadoop.version/1.0.4/label/centos/quinine-core/target/scala-2.10.4/test-classes/small.vcf:0+15651
19/03/14 09:26:37 INFO storage.MemoryStore: Block broadcast_3_piece0 stored as bytes in memory (estimated size 2.3 KB, free 54.4 KB)
19/03/14 09:26:37 INFO storage.BlockManagerInfo: Added broadcast_3_piece0 in memory on localhost:33927 (size: 2.3 KB, free: 522.0 MB)
19/03/14 09:26:37 INFO spark.SparkContext: Created broadcast 3 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Submitting 1 missing tasks from ShuffleMapStage 2 (MapPartitionsRDD[5] at keyBy at GenotypeConcordanceRDDFunctions.scala:49)
19/03/14 09:26:37 INFO scheduler.TaskSchedulerImpl: Adding task set 2.0 with 1 tasks
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 3 (MapPartitionsRDD[7] at keyBy at GenotypeConcordanceRDDFunctions.scala:51), which has no missing parents
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 2.0 (TID 2, localhost, partition 0,PROCESS_LOCAL, 2249 bytes)
19/03/14 09:26:37 INFO storage.MemoryStore: Block broadcast_4 stored as values in memory (estimated size 4.1 KB, free 58.5 KB)
19/03/14 09:26:37 INFO executor.Executor: Running task 0.0 in stage 2.0 (TID 2)
19/03/14 09:26:37 INFO rdd.NewHadoopRDD: Input split: file:/home/jenkins/workspace/quinine/hadoop.version/1.0.4/label/centos/quinine-core/target/scala-2.10.4/test-classes/small.vcf:0+15651
19/03/14 09:26:37 INFO storage.MemoryStore: Block broadcast_4_piece0 stored as bytes in memory (estimated size 2.3 KB, free 60.8 KB)
19/03/14 09:26:37 INFO storage.BlockManagerInfo: Added broadcast_4_piece0 in memory on localhost:33927 (size: 2.3 KB, free: 522.0 MB)
19/03/14 09:26:37 INFO spark.SparkContext: Created broadcast 4 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Submitting 1 missing tasks from ShuffleMapStage 3 (MapPartitionsRDD[7] at keyBy at GenotypeConcordanceRDDFunctions.scala:51)
19/03/14 09:26:37 INFO scheduler.TaskSchedulerImpl: Adding task set 3.0 with 1 tasks
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 3.0 (TID 3, localhost, partition 0,PROCESS_LOCAL, 2249 bytes)
19/03/14 09:26:37 INFO executor.Executor: Running task 0.0 in stage 3.0 (TID 3)
19/03/14 09:26:37 INFO rdd.NewHadoopRDD: Input split: file:/home/jenkins/workspace/quinine/hadoop.version/1.0.4/label/centos/quinine-core/target/scala-2.10.4/test-classes/small.vcf:0+15651
19/03/14 09:26:37 INFO executor.Executor: Finished task 0.0 in stage 1.0 (TID 1). 2237 bytes result sent to driver
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 1.0 (TID 1) in 25 ms on localhost (1/1)
19/03/14 09:26:37 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 1.0, whose tasks have all completed, from pool 
19/03/14 09:26:37 INFO scheduler.DAGScheduler: ShuffleMapStage 1 (keyBy at GenotypeConcordanceRDDFunctions.scala:51) finished in 0.026 s
19/03/14 09:26:37 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:37 INFO scheduler.DAGScheduler: running: Set(ShuffleMapStage 2, ShuffleMapStage 3)
19/03/14 09:26:37 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 5, ShuffleMapStage 4)
19/03/14 09:26:37 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:37 INFO executor.Executor: Finished task 0.0 in stage 2.0 (TID 2). 2237 bytes result sent to driver
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 2.0 (TID 2) in 26 ms on localhost (1/1)
19/03/14 09:26:37 INFO scheduler.DAGScheduler: ShuffleMapStage 2 (keyBy at GenotypeConcordanceRDDFunctions.scala:49) finished in 0.026 s
19/03/14 09:26:37 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 2.0, whose tasks have all completed, from pool 
19/03/14 09:26:37 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:37 INFO scheduler.DAGScheduler: running: Set(ShuffleMapStage 3)
19/03/14 09:26:37 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 5, ShuffleMapStage 4)
19/03/14 09:26:37 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:37 INFO executor.Executor: Finished task 0.0 in stage 3.0 (TID 3). 2237 bytes result sent to driver
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 3.0 (TID 3) in 25 ms on localhost (1/1)
19/03/14 09:26:37 INFO scheduler.DAGScheduler: ShuffleMapStage 3 (keyBy at GenotypeConcordanceRDDFunctions.scala:51) finished in 0.027 s
19/03/14 09:26:37 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 3.0, whose tasks have all completed, from pool 
19/03/14 09:26:37 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:37 INFO scheduler.DAGScheduler: running: Set()
19/03/14 09:26:37 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 5, ShuffleMapStage 4)
19/03/14 09:26:37 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 4 (UnionRDD[14] at union at GenotypeConcordanceRDDFunctions.scala:65), which has no missing parents
19/03/14 09:26:37 INFO storage.MemoryStore: Block broadcast_5 stored as values in memory (estimated size 4.7 KB, free 65.5 KB)
19/03/14 09:26:37 INFO storage.MemoryStore: Block broadcast_5_piece0 stored as bytes in memory (estimated size 2.4 KB, free 67.9 KB)
19/03/14 09:26:37 INFO storage.BlockManagerInfo: Added broadcast_5_piece0 in memory on localhost:33927 (size: 2.4 KB, free: 522.0 MB)
19/03/14 09:26:37 INFO spark.SparkContext: Created broadcast 5 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Submitting 2 missing tasks from ShuffleMapStage 4 (UnionRDD[14] at union at GenotypeConcordanceRDDFunctions.scala:65)
19/03/14 09:26:37 INFO scheduler.TaskSchedulerImpl: Adding task set 4.0 with 2 tasks
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 4.0 (TID 4, localhost, partition 0,PROCESS_LOCAL, 2065 bytes)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 4.0 (TID 5, localhost, partition 1,PROCESS_LOCAL, 2173 bytes)
19/03/14 09:26:37 INFO executor.Executor: Running task 0.0 in stage 4.0 (TID 4)
19/03/14 09:26:37 INFO executor.Executor: Running task 1.0 in stage 4.0 (TID 5)
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 1 blocks
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 1 blocks
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 1 blocks
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 1 blocks
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 1 blocks
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 1 ms
19/03/14 09:26:37 INFO executor.Executor: Finished task 0.0 in stage 4.0 (TID 4). 1304 bytes result sent to driver
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 4.0 (TID 4) in 37 ms on localhost (1/2)
19/03/14 09:26:37 INFO executor.Executor: Finished task 1.0 in stage 4.0 (TID 5). 1304 bytes result sent to driver
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 4.0 (TID 5) in 43 ms on localhost (2/2)
19/03/14 09:26:37 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 4.0, whose tasks have all completed, from pool 
19/03/14 09:26:37 INFO scheduler.DAGScheduler: ShuffleMapStage 4 (union at GenotypeConcordanceRDDFunctions.scala:65) finished in 0.044 s
19/03/14 09:26:37 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:37 INFO scheduler.DAGScheduler: running: Set()
19/03/14 09:26:37 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 5)
19/03/14 09:26:37 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Submitting ResultStage 5 (ShuffledRDD[15] at combineByKey at GenotypeConcordanceRDDFunctions.scala:65), which has no missing parents
19/03/14 09:26:37 INFO storage.MemoryStore: Block broadcast_6 stored as values in memory (estimated size 2.6 KB, free 70.4 KB)
19/03/14 09:26:37 INFO storage.MemoryStore: Block broadcast_6_piece0 stored as bytes in memory (estimated size 1475.0 B, free 71.9 KB)
19/03/14 09:26:37 INFO storage.BlockManagerInfo: Added broadcast_6_piece0 in memory on localhost:33927 (size: 1475.0 B, free: 522.0 MB)
19/03/14 09:26:37 INFO spark.SparkContext: Created broadcast 6 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Submitting 2 missing tasks from ResultStage 5 (ShuffledRDD[15] at combineByKey at GenotypeConcordanceRDDFunctions.scala:65)
19/03/14 09:26:37 INFO scheduler.TaskSchedulerImpl: Adding task set 5.0 with 2 tasks
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 5.0 (TID 6, localhost, partition 0,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 5.0 (TID 7, localhost, partition 1,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:37 INFO executor.Executor: Running task 1.0 in stage 5.0 (TID 7)
19/03/14 09:26:37 INFO executor.Executor: Running task 0.0 in stage 5.0 (TID 6)
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 2 blocks
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 2 blocks
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:37 INFO executor.Executor: Finished task 0.0 in stage 5.0 (TID 6). 1217 bytes result sent to driver
19/03/14 09:26:37 INFO executor.Executor: Finished task 1.0 in stage 5.0 (TID 7). 1257 bytes result sent to driver
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 5.0 (TID 6) in 7 ms on localhost (1/2)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 5.0 (TID 7) in 7 ms on localhost (2/2)
19/03/14 09:26:37 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 5.0, whose tasks have all completed, from pool 
19/03/14 09:26:37 INFO scheduler.DAGScheduler: ResultStage 5 (collectAsMap at GenotypeConcordanceRDDFunctionsSuite.scala:62) finished in 0.008 s
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Job 1 finished: collectAsMap at GenotypeConcordanceRDDFunctionsSuite.scala:62, took 0.103306 s
19/03/14 09:26:37 INFO spark.MapOutputTrackerMasterEndpoint: MapOutputTrackerMasterEndpoint stopped!
19/03/14 09:26:37 INFO storage.MemoryStore: MemoryStore cleared
19/03/14 09:26:37 INFO storage.BlockManager: BlockManager stopped
19/03/14 09:26:37 INFO storage.BlockManagerMaster: BlockManagerMaster stopped
19/03/14 09:26:37 INFO scheduler.OutputCommitCoordinator$OutputCommitCoordinatorEndpoint: OutputCommitCoordinator stopped!
19/03/14 09:26:37 INFO remote.RemoteActorRefProvider$RemotingTerminator: Shutting down remote daemon.
19/03/14 09:26:37 INFO remote.RemoteActorRefProvider$RemotingTerminator: Remote daemon shut down; proceeding with flushing remote transports.
19/03/14 09:26:37 INFO spark.SparkContext: Successfully stopped SparkContext
- concordance of identical VCFs should be 1.0
19/03/14 09:26:37 INFO spark.SparkContext: Running Spark version 1.6.1
19/03/14 09:26:37 INFO remote.RemoteActorRefProvider$RemotingTerminator: Remoting shut down.
19/03/14 09:26:37 INFO spark.SecurityManager: Changing view acls to: jenkins
19/03/14 09:26:37 INFO spark.SecurityManager: Changing modify acls to: jenkins
19/03/14 09:26:37 INFO spark.SecurityManager: SecurityManager: authentication disabled; ui acls disabled; users with view permissions: Set(jenkins); users with modify permissions: Set(jenkins)
GenotypesSummarySuite:
19/03/14 09:26:37 INFO util.Utils: Successfully started service 'sparkDriver' on port 56584.
19/03/14 09:26:37 INFO slf4j.Slf4jLogger: Slf4jLogger started
19/03/14 09:26:37 INFO Remoting: Starting remoting
19/03/14 09:26:37 INFO Remoting: Remoting started; listening on addresses :[akka.tcp://sparkDriverActorSystem@localhost:56585]
19/03/14 09:26:37 INFO util.Utils: Successfully started service 'sparkDriverActorSystem' on port 56585.
19/03/14 09:26:37 INFO spark.SparkEnv: Registering MapOutputTracker
19/03/14 09:26:37 INFO spark.SparkEnv: Registering BlockManagerMaster
19/03/14 09:26:37 INFO storage.DiskBlockManager: Created local directory at /tmp/blockmgr-5ff5edfa-0010-4b86-8c88-e7d1d15b83f6
19/03/14 09:26:37 INFO storage.MemoryStore: MemoryStore started with capacity 522.0 MB
19/03/14 09:26:37 INFO spark.SparkEnv: Registering OutputCommitCoordinator
19/03/14 09:26:37 INFO executor.Executor: Starting executor ID driver on host localhost
19/03/14 09:26:37 INFO util.Utils: Successfully started service 'org.apache.spark.network.netty.NettyBlockTransferService' on port 38703.
19/03/14 09:26:37 INFO netty.NettyBlockTransferService: Server created on 38703
19/03/14 09:26:37 INFO storage.BlockManagerMaster: Trying to register BlockManager
19/03/14 09:26:37 INFO storage.BlockManagerMasterEndpoint: Registering block manager localhost:38703 with 522.0 MB RAM, BlockManagerId(driver, localhost, 38703)
19/03/14 09:26:37 INFO storage.BlockManagerMaster: Registered BlockManager
19/03/14 09:26:37 INFO spark.SparkContext: Starting job: fold at GenotypesSummary.scala:196
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Got job 0 (fold at GenotypesSummary.scala:196) with 4 output partitions
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Final stage: ResultStage 0 (fold at GenotypesSummary.scala:196)
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Parents of final stage: List()
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Missing parents: List()
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Submitting ResultStage 0 (MapPartitionsRDD[1] at map at GenotypesSummary.scala:195), which has no missing parents
19/03/14 09:26:37 INFO storage.MemoryStore: Block broadcast_0 stored as values in memory (estimated size 2.1 KB, free 2.1 KB)
19/03/14 09:26:37 INFO storage.MemoryStore: Block broadcast_0_piece0 stored as bytes in memory (estimated size 1295.0 B, free 3.4 KB)
19/03/14 09:26:37 INFO storage.BlockManagerInfo: Added broadcast_0_piece0 in memory on localhost:38703 (size: 1295.0 B, free: 522.0 MB)
19/03/14 09:26:37 INFO spark.SparkContext: Created broadcast 0 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ResultStage 0 (MapPartitionsRDD[1] at map at GenotypesSummary.scala:195)
19/03/14 09:26:37 INFO scheduler.TaskSchedulerImpl: Adding task set 0.0 with 4 tasks
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 0.0 (TID 0, localhost, partition 0,PROCESS_LOCAL, 2220 bytes)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 0.0 (TID 1, localhost, partition 1,PROCESS_LOCAL, 2287 bytes)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 0.0 (TID 2, localhost, partition 2,PROCESS_LOCAL, 2287 bytes)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 0.0 (TID 3, localhost, partition 3,PROCESS_LOCAL, 2287 bytes)
19/03/14 09:26:37 INFO executor.Executor: Running task 0.0 in stage 0.0 (TID 0)
19/03/14 09:26:37 INFO executor.Executor: Running task 1.0 in stage 0.0 (TID 1)
19/03/14 09:26:37 INFO executor.Executor: Running task 2.0 in stage 0.0 (TID 2)
19/03/14 09:26:37 INFO executor.Executor: Running task 3.0 in stage 0.0 (TID 3)
19/03/14 09:26:37 INFO executor.Executor: Finished task 2.0 in stage 0.0 (TID 2). 1135 bytes result sent to driver
19/03/14 09:26:37 INFO executor.Executor: Finished task 1.0 in stage 0.0 (TID 1). 1138 bytes result sent to driver
19/03/14 09:26:37 INFO executor.Executor: Finished task 0.0 in stage 0.0 (TID 0). 1138 bytes result sent to driver
19/03/14 09:26:37 INFO executor.Executor: Finished task 3.0 in stage 0.0 (TID 3). 1240 bytes result sent to driver
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 0.0 (TID 2) in 18 ms on localhost (1/4)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 0.0 (TID 1) in 19 ms on localhost (2/4)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 0.0 (TID 3) in 16 ms on localhost (3/4)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 0.0 (TID 0) in 22 ms on localhost (4/4)
19/03/14 09:26:37 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 0.0, whose tasks have all completed, from pool 
19/03/14 09:26:37 INFO scheduler.DAGScheduler: ResultStage 0 (fold at GenotypesSummary.scala:196) finished in 0.023 s
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Job 0 finished: fold at GenotypesSummary.scala:196, took 0.030399 s
19/03/14 09:26:37 INFO spark.SparkContext: Starting job: countByValue at GenotypesSummary.scala:202
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Registering RDD 5 (countByValue at GenotypesSummary.scala:202)
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Got job 1 (countByValue at GenotypesSummary.scala:202) with 4 output partitions
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Final stage: ResultStage 2 (countByValue at GenotypesSummary.scala:202)
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 1)
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Missing parents: List(ShuffleMapStage 1)
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 1 (MapPartitionsRDD[5] at countByValue at GenotypesSummary.scala:202), which has no missing parents
19/03/14 09:26:37 INFO storage.MemoryStore: Block broadcast_1 stored as values in memory (estimated size 3.4 KB, free 6.7 KB)
19/03/14 09:26:37 INFO storage.MemoryStore: Block broadcast_1_piece0 stored as bytes in memory (estimated size 1878.0 B, free 8.6 KB)
19/03/14 09:26:37 INFO storage.BlockManagerInfo: Added broadcast_1_piece0 in memory on localhost:38703 (size: 1878.0 B, free: 522.0 MB)
19/03/14 09:26:37 INFO spark.SparkContext: Created broadcast 1 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 1 (MapPartitionsRDD[5] at countByValue at GenotypesSummary.scala:202)
19/03/14 09:26:37 INFO scheduler.TaskSchedulerImpl: Adding task set 1.0 with 4 tasks
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 1.0 (TID 4, localhost, partition 0,PROCESS_LOCAL, 2209 bytes)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 1.0 (TID 5, localhost, partition 1,PROCESS_LOCAL, 2276 bytes)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 1.0 (TID 6, localhost, partition 2,PROCESS_LOCAL, 2276 bytes)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 1.0 (TID 7, localhost, partition 3,PROCESS_LOCAL, 2276 bytes)
19/03/14 09:26:37 INFO executor.Executor: Running task 2.0 in stage 1.0 (TID 6)
19/03/14 09:26:37 INFO executor.Executor: Running task 0.0 in stage 1.0 (TID 4)
19/03/14 09:26:37 INFO executor.Executor: Running task 1.0 in stage 1.0 (TID 5)
19/03/14 09:26:37 INFO executor.Executor: Running task 3.0 in stage 1.0 (TID 7)
19/03/14 09:26:37 INFO executor.Executor: Finished task 3.0 in stage 1.0 (TID 7). 1090 bytes result sent to driver
19/03/14 09:26:37 INFO executor.Executor: Finished task 2.0 in stage 1.0 (TID 6). 1090 bytes result sent to driver
19/03/14 09:26:37 INFO executor.Executor: Finished task 0.0 in stage 1.0 (TID 4). 1090 bytes result sent to driver
19/03/14 09:26:37 INFO executor.Executor: Finished task 1.0 in stage 1.0 (TID 5). 1090 bytes result sent to driver
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 1.0 (TID 7) in 10 ms on localhost (1/4)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 1.0 (TID 6) in 12 ms on localhost (2/4)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 1.0 (TID 4) in 15 ms on localhost (3/4)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 1.0 (TID 5) in 14 ms on localhost (4/4)
19/03/14 09:26:37 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 1.0, whose tasks have all completed, from pool 
19/03/14 09:26:37 INFO scheduler.DAGScheduler: ShuffleMapStage 1 (countByValue at GenotypesSummary.scala:202) finished in 0.016 s
19/03/14 09:26:37 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:37 INFO scheduler.DAGScheduler: running: Set()
19/03/14 09:26:37 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 2)
19/03/14 09:26:37 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Submitting ResultStage 2 (ShuffledRDD[6] at countByValue at GenotypesSummary.scala:202), which has no missing parents
19/03/14 09:26:37 INFO storage.MemoryStore: Block broadcast_2 stored as values in memory (estimated size 2.6 KB, free 11.2 KB)
19/03/14 09:26:37 INFO storage.MemoryStore: Block broadcast_2_piece0 stored as bytes in memory (estimated size 1583.0 B, free 12.8 KB)
19/03/14 09:26:37 INFO storage.BlockManagerInfo: Added broadcast_2_piece0 in memory on localhost:38703 (size: 1583.0 B, free: 522.0 MB)
19/03/14 09:26:37 INFO spark.SparkContext: Created broadcast 2 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ResultStage 2 (ShuffledRDD[6] at countByValue at GenotypesSummary.scala:202)
19/03/14 09:26:37 INFO scheduler.TaskSchedulerImpl: Adding task set 2.0 with 4 tasks
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 2.0 (TID 8, localhost, partition 0,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 2.0 (TID 9, localhost, partition 1,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 2.0 (TID 10, localhost, partition 2,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 2.0 (TID 11, localhost, partition 3,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:37 INFO executor.Executor: Running task 0.0 in stage 2.0 (TID 8)
19/03/14 09:26:37 INFO executor.Executor: Running task 2.0 in stage 2.0 (TID 10)
19/03/14 09:26:37 INFO executor.Executor: Running task 3.0 in stage 2.0 (TID 11)
19/03/14 09:26:37 INFO executor.Executor: Running task 1.0 in stage 2.0 (TID 9)
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Getting 3 non-empty blocks out of 4 blocks
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Getting 3 non-empty blocks out of 4 blocks
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Getting 2 non-empty blocks out of 4 blocks
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:37 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:37 INFO executor.Executor: Finished task 2.0 in stage 2.0 (TID 10). 1159 bytes result sent to driver
19/03/14 09:26:37 INFO executor.Executor: Finished task 3.0 in stage 2.0 (TID 11). 1300 bytes result sent to driver
19/03/14 09:26:37 INFO executor.Executor: Finished task 1.0 in stage 2.0 (TID 9). 1229 bytes result sent to driver
19/03/14 09:26:37 INFO executor.Executor: Finished task 0.0 in stage 2.0 (TID 8). 1159 bytes result sent to driver
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 2.0 (TID 9) in 8 ms on localhost (1/4)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 2.0 (TID 11) in 9 ms on localhost (2/4)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 2.0 (TID 10) in 9 ms on localhost (3/4)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 2.0 (TID 8) in 10 ms on localhost (4/4)
19/03/14 09:26:37 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 2.0, whose tasks have all completed, from pool 
19/03/14 09:26:37 INFO scheduler.DAGScheduler: ResultStage 2 (countByValue at GenotypesSummary.scala:202) finished in 0.010 s
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Job 1 finished: countByValue at GenotypesSummary.scala:202, took 0.039273 s
19/03/14 09:26:37 INFO spark.MapOutputTrackerMasterEndpoint: MapOutputTrackerMasterEndpoint stopped!
19/03/14 09:26:37 INFO storage.MemoryStore: MemoryStore cleared
19/03/14 09:26:37 INFO storage.BlockManager: BlockManager stopped
19/03/14 09:26:37 INFO storage.BlockManagerMaster: BlockManagerMaster stopped
19/03/14 09:26:37 INFO scheduler.OutputCommitCoordinator$OutputCommitCoordinatorEndpoint: OutputCommitCoordinator stopped!
19/03/14 09:26:37 INFO remote.RemoteActorRefProvider$RemotingTerminator: Shutting down remote daemon.
19/03/14 09:26:37 INFO remote.RemoteActorRefProvider$RemotingTerminator: Remote daemon shut down; proceeding with flushing remote transports.
19/03/14 09:26:37 INFO spark.SparkContext: Successfully stopped SparkContext
- simple genotypes summary
19/03/14 09:26:37 INFO spark.SparkContext: Running Spark version 1.6.1
19/03/14 09:26:37 INFO remote.RemoteActorRefProvider$RemotingTerminator: Remoting shut down.
19/03/14 09:26:37 INFO spark.SecurityManager: Changing view acls to: jenkins
19/03/14 09:26:37 INFO spark.SecurityManager: Changing modify acls to: jenkins
19/03/14 09:26:37 INFO spark.SecurityManager: SecurityManager: authentication disabled; ui acls disabled; users with view permissions: Set(jenkins); users with modify permissions: Set(jenkins)
19/03/14 09:26:37 INFO util.Utils: Successfully started service 'sparkDriver' on port 56242.
19/03/14 09:26:37 INFO slf4j.Slf4jLogger: Slf4jLogger started
19/03/14 09:26:37 INFO Remoting: Starting remoting
19/03/14 09:26:37 INFO Remoting: Remoting started; listening on addresses :[akka.tcp://sparkDriverActorSystem@localhost:56243]
19/03/14 09:26:37 INFO util.Utils: Successfully started service 'sparkDriverActorSystem' on port 56243.
19/03/14 09:26:37 INFO spark.SparkEnv: Registering MapOutputTracker
19/03/14 09:26:37 INFO spark.SparkEnv: Registering BlockManagerMaster
19/03/14 09:26:37 INFO storage.DiskBlockManager: Created local directory at /tmp/blockmgr-5c1cf9ac-98f2-4cca-ba9b-67e42fa6203e
19/03/14 09:26:37 INFO storage.MemoryStore: MemoryStore started with capacity 522.0 MB
19/03/14 09:26:37 INFO spark.SparkEnv: Registering OutputCommitCoordinator
19/03/14 09:26:37 INFO executor.Executor: Starting executor ID driver on host localhost
19/03/14 09:26:37 INFO util.Utils: Successfully started service 'org.apache.spark.network.netty.NettyBlockTransferService' on port 44161.
19/03/14 09:26:37 INFO netty.NettyBlockTransferService: Server created on 44161
19/03/14 09:26:37 INFO storage.BlockManagerMaster: Trying to register BlockManager
19/03/14 09:26:37 INFO storage.BlockManagerMasterEndpoint: Registering block manager localhost:44161 with 522.0 MB RAM, BlockManagerId(driver, localhost, 44161)
19/03/14 09:26:37 INFO storage.BlockManagerMaster: Registered BlockManager
19/03/14 09:26:37 INFO spark.SparkContext: Starting job: fold at GenotypesSummary.scala:196
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Got job 0 (fold at GenotypesSummary.scala:196) with 4 output partitions
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Final stage: ResultStage 0 (fold at GenotypesSummary.scala:196)
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Parents of final stage: List()
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Missing parents: List()
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Submitting ResultStage 0 (MapPartitionsRDD[1] at map at GenotypesSummary.scala:195), which has no missing parents
19/03/14 09:26:37 INFO storage.MemoryStore: Block broadcast_0 stored as values in memory (estimated size 2.1 KB, free 2.1 KB)
19/03/14 09:26:37 INFO storage.MemoryStore: Block broadcast_0_piece0 stored as bytes in memory (estimated size 1295.0 B, free 3.4 KB)
19/03/14 09:26:37 INFO storage.BlockManagerInfo: Added broadcast_0_piece0 in memory on localhost:44161 (size: 1295.0 B, free: 522.0 MB)
19/03/14 09:26:37 INFO spark.SparkContext: Created broadcast 0 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ResultStage 0 (MapPartitionsRDD[1] at map at GenotypesSummary.scala:195)
19/03/14 09:26:37 INFO scheduler.TaskSchedulerImpl: Adding task set 0.0 with 4 tasks
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 0.0 (TID 0, localhost, partition 0,PROCESS_LOCAL, 2016 bytes)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 0.0 (TID 1, localhost, partition 1,PROCESS_LOCAL, 2016 bytes)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 0.0 (TID 2, localhost, partition 2,PROCESS_LOCAL, 2016 bytes)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 0.0 (TID 3, localhost, partition 3,PROCESS_LOCAL, 2083 bytes)
19/03/14 09:26:37 INFO executor.Executor: Running task 0.0 in stage 0.0 (TID 0)
19/03/14 09:26:37 INFO executor.Executor: Running task 1.0 in stage 0.0 (TID 1)
19/03/14 09:26:37 INFO executor.Executor: Running task 2.0 in stage 0.0 (TID 2)
19/03/14 09:26:37 INFO executor.Executor: Running task 3.0 in stage 0.0 (TID 3)
19/03/14 09:26:37 INFO executor.Executor: Finished task 2.0 in stage 0.0 (TID 2). 915 bytes result sent to driver
19/03/14 09:26:37 INFO executor.Executor: Finished task 0.0 in stage 0.0 (TID 0). 915 bytes result sent to driver
19/03/14 09:26:37 INFO executor.Executor: Finished task 1.0 in stage 0.0 (TID 1). 915 bytes result sent to driver
19/03/14 09:26:37 INFO executor.Executor: Finished task 3.0 in stage 0.0 (TID 3). 1065 bytes result sent to driver
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 0.0 (TID 2) in 13 ms on localhost (1/4)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 0.0 (TID 0) in 18 ms on localhost (2/4)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 0.0 (TID 1) in 16 ms on localhost (3/4)
19/03/14 09:26:37 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 0.0 (TID 3) in 13 ms on localhost (4/4)
19/03/14 09:26:37 INFO scheduler.DAGScheduler: ResultStage 0 (fold at GenotypesSummary.scala:196) finished in 0.020 s
19/03/14 09:26:37 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 0.0, whose tasks have all completed, from pool 
19/03/14 09:26:37 INFO scheduler.DAGScheduler: Job 0 finished: fold at GenotypesSummary.scala:196, took 0.026064 s
19/03/14 09:26:38 INFO spark.SparkContext: Starting job: countByValue at GenotypesSummary.scala:202
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Registering RDD 5 (countByValue at GenotypesSummary.scala:202)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Got job 1 (countByValue at GenotypesSummary.scala:202) with 4 output partitions
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Final stage: ResultStage 2 (countByValue at GenotypesSummary.scala:202)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 1)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Missing parents: List(ShuffleMapStage 1)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 1 (MapPartitionsRDD[5] at countByValue at GenotypesSummary.scala:202), which has no missing parents
19/03/14 09:26:38 INFO storage.MemoryStore: Block broadcast_1 stored as values in memory (estimated size 3.4 KB, free 6.7 KB)
19/03/14 09:26:38 INFO storage.MemoryStore: Block broadcast_1_piece0 stored as bytes in memory (estimated size 1878.0 B, free 8.6 KB)
19/03/14 09:26:38 INFO storage.BlockManagerInfo: Added broadcast_1_piece0 in memory on localhost:44161 (size: 1878.0 B, free: 522.0 MB)
19/03/14 09:26:38 INFO spark.SparkContext: Created broadcast 1 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 1 (MapPartitionsRDD[5] at countByValue at GenotypesSummary.scala:202)
19/03/14 09:26:38 INFO scheduler.TaskSchedulerImpl: Adding task set 1.0 with 4 tasks
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 1.0 (TID 4, localhost, partition 0,PROCESS_LOCAL, 2005 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 1.0 (TID 5, localhost, partition 1,PROCESS_LOCAL, 2005 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 1.0 (TID 6, localhost, partition 2,PROCESS_LOCAL, 2005 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 1.0 (TID 7, localhost, partition 3,PROCESS_LOCAL, 2072 bytes)
19/03/14 09:26:38 INFO executor.Executor: Running task 0.0 in stage 1.0 (TID 4)
19/03/14 09:26:38 INFO executor.Executor: Running task 3.0 in stage 1.0 (TID 7)
19/03/14 09:26:38 INFO executor.Executor: Running task 2.0 in stage 1.0 (TID 6)
19/03/14 09:26:38 INFO executor.Executor: Running task 1.0 in stage 1.0 (TID 5)
19/03/14 09:26:38 INFO executor.Executor: Finished task 2.0 in stage 1.0 (TID 6). 1090 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 1.0 in stage 1.0 (TID 5). 1090 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 3.0 in stage 1.0 (TID 7). 1090 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 0.0 in stage 1.0 (TID 4). 1090 bytes result sent to driver
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 1.0 (TID 6) in 13 ms on localhost (1/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 1.0 (TID 4) in 17 ms on localhost (2/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 1.0 (TID 5) in 14 ms on localhost (3/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 1.0 (TID 7) in 11 ms on localhost (4/4)
19/03/14 09:26:38 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 1.0, whose tasks have all completed, from pool 
19/03/14 09:26:38 INFO scheduler.DAGScheduler: ShuffleMapStage 1 (countByValue at GenotypesSummary.scala:202) finished in 0.018 s
19/03/14 09:26:38 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:38 INFO scheduler.DAGScheduler: running: Set()
19/03/14 09:26:38 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 2)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Submitting ResultStage 2 (ShuffledRDD[6] at countByValue at GenotypesSummary.scala:202), which has no missing parents
19/03/14 09:26:38 INFO storage.MemoryStore: Block broadcast_2 stored as values in memory (estimated size 2.6 KB, free 11.2 KB)
19/03/14 09:26:38 INFO storage.MemoryStore: Block broadcast_2_piece0 stored as bytes in memory (estimated size 1583.0 B, free 12.8 KB)
19/03/14 09:26:38 INFO storage.BlockManagerInfo: Added broadcast_2_piece0 in memory on localhost:44161 (size: 1583.0 B, free: 522.0 MB)
19/03/14 09:26:38 INFO spark.SparkContext: Created broadcast 2 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ResultStage 2 (ShuffledRDD[6] at countByValue at GenotypesSummary.scala:202)
19/03/14 09:26:38 INFO scheduler.TaskSchedulerImpl: Adding task set 2.0 with 4 tasks
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 2.0 (TID 8, localhost, partition 0,PROCESS_LOCAL, 1894 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 2.0 (TID 9, localhost, partition 1,PROCESS_LOCAL, 1894 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 2.0 (TID 10, localhost, partition 2,PROCESS_LOCAL, 1894 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 2.0 (TID 11, localhost, partition 3,PROCESS_LOCAL, 1894 bytes)
19/03/14 09:26:38 INFO executor.Executor: Running task 0.0 in stage 2.0 (TID 8)
19/03/14 09:26:38 INFO executor.Executor: Running task 3.0 in stage 2.0 (TID 11)
19/03/14 09:26:38 INFO executor.Executor: Running task 2.0 in stage 2.0 (TID 10)
19/03/14 09:26:38 INFO executor.Executor: Running task 1.0 in stage 2.0 (TID 9)
19/03/14 09:26:38 INFO storage.ShuffleBlockFetcherIterator: Getting 0 non-empty blocks out of 4 blocks
19/03/14 09:26:38 INFO storage.ShuffleBlockFetcherIterator: Getting 0 non-empty blocks out of 4 blocks
19/03/14 09:26:38 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:38 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:38 INFO storage.ShuffleBlockFetcherIterator: Getting 0 non-empty blocks out of 4 blocks
19/03/14 09:26:38 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:38 INFO storage.ShuffleBlockFetcherIterator: Getting 0 non-empty blocks out of 4 blocks
19/03/14 09:26:38 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:38 INFO executor.Executor: Finished task 1.0 in stage 2.0 (TID 9). 1124 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 3.0 in stage 2.0 (TID 11). 1124 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 2.0 in stage 2.0 (TID 10). 1124 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 0.0 in stage 2.0 (TID 8). 1124 bytes result sent to driver
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 2.0 (TID 9) in 7 ms on localhost (1/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 2.0 (TID 11) in 7 ms on localhost (2/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 2.0 (TID 10) in 7 ms on localhost (3/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 2.0 (TID 8) in 9 ms on localhost (4/4)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: ResultStage 2 (countByValue at GenotypesSummary.scala:202) finished in 0.009 s
19/03/14 09:26:38 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 2.0, whose tasks have all completed, from pool 
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Job 1 finished: countByValue at GenotypesSummary.scala:202, took 0.042225 s
19/03/14 09:26:38 INFO spark.MapOutputTrackerMasterEndpoint: MapOutputTrackerMasterEndpoint stopped!
19/03/14 09:26:38 INFO storage.MemoryStore: MemoryStore cleared
19/03/14 09:26:38 INFO storage.BlockManager: BlockManager stopped
19/03/14 09:26:38 INFO storage.BlockManagerMaster: BlockManagerMaster stopped
19/03/14 09:26:38 INFO scheduler.OutputCommitCoordinator$OutputCommitCoordinatorEndpoint: OutputCommitCoordinator stopped!
19/03/14 09:26:38 INFO remote.RemoteActorRefProvider$RemotingTerminator: Shutting down remote daemon.
19/03/14 09:26:38 INFO remote.RemoteActorRefProvider$RemotingTerminator: Remote daemon shut down; proceeding with flushing remote transports.
19/03/14 09:26:38 INFO spark.SparkContext: Successfully stopped SparkContext
- empty genotypes summary
19/03/14 09:26:38 INFO remote.RemoteActorRefProvider$RemotingTerminator: Remoting shut down.
19/03/14 09:26:38 INFO spark.SparkContext: Running Spark version 1.6.1
19/03/14 09:26:38 INFO spark.SecurityManager: Changing view acls to: jenkins
19/03/14 09:26:38 INFO spark.SecurityManager: Changing modify acls to: jenkins
19/03/14 09:26:38 INFO spark.SecurityManager: SecurityManager: authentication disabled; ui acls disabled; users with view permissions: Set(jenkins); users with modify permissions: Set(jenkins)
CoverageStatsSuite:
- take simple mean of all equally weighted points
- take simple mean of inequally weighted points
- take simple median of all equally weighted points
- take simple median of inequally weighted points
- take median when it lies between points
- covered at 0 should return all sites
- covered at 2 should return fewer sites
- covered at 5 should return no sites
GeneratorFilterSuite:
- CombinedFilter combines two independent filters
19/03/14 09:26:38 INFO util.Utils: Successfully started service 'sparkDriver' on port 54476.
ReadCoverageSuite:
- unmapped reads should emit no coverage observations
- generate coverage observations for a mapped read
19/03/14 09:26:38 INFO slf4j.Slf4jLogger: Slf4jLogger started
19/03/14 09:26:38 INFO Remoting: Starting remoting
19/03/14 09:26:38 INFO Remoting: Remoting started; listening on addresses :[akka.tcp://sparkDriverActorSystem@localhost:54477]
19/03/14 09:26:38 INFO util.Utils: Successfully started service 'sparkDriverActorSystem' on port 54477.
19/03/14 09:26:38 INFO spark.SparkEnv: Registering MapOutputTracker
19/03/14 09:26:38 INFO spark.SparkEnv: Registering BlockManagerMaster
19/03/14 09:26:38 INFO storage.DiskBlockManager: Created local directory at /tmp/blockmgr-8507c3bd-cec3-4a65-91c0-a2a70f3a7d08
19/03/14 09:26:38 INFO storage.MemoryStore: MemoryStore started with capacity 522.0 MB
19/03/14 09:26:38 INFO spark.SparkEnv: Registering OutputCommitCoordinator
19/03/14 09:26:38 INFO executor.Executor: Starting executor ID driver on host localhost
19/03/14 09:26:38 INFO util.Utils: Successfully started service 'org.apache.spark.network.netty.NettyBlockTransferService' on port 44339.
19/03/14 09:26:38 INFO netty.NettyBlockTransferService: Server created on 44339
19/03/14 09:26:38 INFO storage.BlockManagerMaster: Trying to register BlockManager
19/03/14 09:26:38 INFO storage.BlockManagerMasterEndpoint: Registering block manager localhost:44339 with 522.0 MB RAM, BlockManagerId(driver, localhost, 44339)
19/03/14 09:26:38 INFO storage.BlockManagerMaster: Registered BlockManager
19/03/14 09:26:38 INFO spark.SparkContext: Starting job: collect at ReadCoverageSuite.scala:70
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Registering RDD 1 (flatMap at ReadCoverage.scala:59)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Got job 0 (collect at ReadCoverageSuite.scala:70) with 4 output partitions
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Final stage: ResultStage 1 (collect at ReadCoverageSuite.scala:70)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 0)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Missing parents: List(ShuffleMapStage 0)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 0 (MapPartitionsRDD[1] at flatMap at ReadCoverage.scala:59), which has no missing parents
19/03/14 09:26:38 INFO storage.MemoryStore: Block broadcast_0 stored as values in memory (estimated size 2.7 KB, free 2.7 KB)
19/03/14 09:26:38 INFO storage.MemoryStore: Block broadcast_0_piece0 stored as bytes in memory (estimated size 1681.0 B, free 4.4 KB)
19/03/14 09:26:38 INFO storage.BlockManagerInfo: Added broadcast_0_piece0 in memory on localhost:44339 (size: 1681.0 B, free: 522.0 MB)
19/03/14 09:26:38 INFO spark.SparkContext: Created broadcast 0 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 0 (MapPartitionsRDD[1] at flatMap at ReadCoverage.scala:59)
19/03/14 09:26:38 INFO scheduler.TaskSchedulerImpl: Adding task set 0.0 with 4 tasks
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 0.0 (TID 0, localhost, partition 0,PROCESS_LOCAL, 2216 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 0.0 (TID 1, localhost, partition 1,PROCESS_LOCAL, 2216 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 0.0 (TID 2, localhost, partition 2,PROCESS_LOCAL, 2216 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 0.0 (TID 3, localhost, partition 3,PROCESS_LOCAL, 2216 bytes)
19/03/14 09:26:38 INFO executor.Executor: Running task 0.0 in stage 0.0 (TID 0)
19/03/14 09:26:38 INFO executor.Executor: Running task 1.0 in stage 0.0 (TID 1)
19/03/14 09:26:38 INFO executor.Executor: Running task 2.0 in stage 0.0 (TID 2)
19/03/14 09:26:38 INFO executor.Executor: Running task 3.0 in stage 0.0 (TID 3)
19/03/14 09:26:38 INFO executor.Executor: Finished task 0.0 in stage 0.0 (TID 0). 1090 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 3.0 in stage 0.0 (TID 3). 1090 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 1.0 in stage 0.0 (TID 1). 1090 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 2.0 in stage 0.0 (TID 2). 1090 bytes result sent to driver
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 0.0 (TID 0) in 22 ms on localhost (1/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 0.0 (TID 3) in 15 ms on localhost (2/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 0.0 (TID 1) in 21 ms on localhost (3/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 0.0 (TID 2) in 19 ms on localhost (4/4)
19/03/14 09:26:38 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 0.0, whose tasks have all completed, from pool 
19/03/14 09:26:38 INFO scheduler.DAGScheduler: ShuffleMapStage 0 (flatMap at ReadCoverage.scala:59) finished in 0.025 s
19/03/14 09:26:38 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:38 INFO scheduler.DAGScheduler: running: Set()
19/03/14 09:26:38 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 1)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Submitting ResultStage 1 (ShuffledRDD[2] at reduceByKey at ReadCoverage.scala:60), which has no missing parents
19/03/14 09:26:38 INFO storage.MemoryStore: Block broadcast_1 stored as values in memory (estimated size 2.8 KB, free 7.2 KB)
19/03/14 09:26:38 INFO storage.MemoryStore: Block broadcast_1_piece0 stored as bytes in memory (estimated size 1708.0 B, free 8.8 KB)
19/03/14 09:26:38 INFO storage.BlockManagerInfo: Added broadcast_1_piece0 in memory on localhost:44339 (size: 1708.0 B, free: 522.0 MB)
19/03/14 09:26:38 INFO spark.SparkContext: Created broadcast 1 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ResultStage 1 (ShuffledRDD[2] at reduceByKey at ReadCoverage.scala:60)
19/03/14 09:26:38 INFO scheduler.TaskSchedulerImpl: Adding task set 1.0 with 4 tasks
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 1.0 (TID 4, localhost, partition 1,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 1.0 (TID 5, localhost, partition 3,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 1.0 (TID 6, localhost, partition 0,PROCESS_LOCAL, 1894 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 1.0 (TID 7, localhost, partition 2,PROCESS_LOCAL, 1894 bytes)
19/03/14 09:26:38 INFO executor.Executor: Running task 1.0 in stage 1.0 (TID 4)
19/03/14 09:26:38 INFO executor.Executor: Running task 3.0 in stage 1.0 (TID 5)
19/03/14 09:26:38 INFO executor.Executor: Running task 2.0 in stage 1.0 (TID 7)
19/03/14 09:26:38 INFO executor.Executor: Running task 0.0 in stage 1.0 (TID 6)
19/03/14 09:26:38 INFO storage.ShuffleBlockFetcherIterator: Getting 0 non-empty blocks out of 4 blocks
19/03/14 09:26:38 INFO storage.ShuffleBlockFetcherIterator: Getting 4 non-empty blocks out of 4 blocks
19/03/14 09:26:38 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:38 INFO storage.ShuffleBlockFetcherIterator: Getting 0 non-empty blocks out of 4 blocks
19/03/14 09:26:38 INFO storage.ShuffleBlockFetcherIterator: Getting 4 non-empty blocks out of 4 blocks
19/03/14 09:26:38 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:38 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:38 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:38 INFO executor.Executor: Finished task 2.0 in stage 1.0 (TID 7). 1124 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 0.0 in stage 1.0 (TID 6). 1124 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 1.0 in stage 1.0 (TID 4). 1292 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 3.0 in stage 1.0 (TID 5). 1271 bytes result sent to driver
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 1.0 (TID 7) in 6 ms on localhost (1/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 1.0 (TID 6) in 7 ms on localhost (2/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 1.0 (TID 4) in 8 ms on localhost (3/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 1.0 (TID 5) in 8 ms on localhost (4/4)
19/03/14 09:26:38 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 1.0, whose tasks have all completed, from pool 
19/03/14 09:26:38 INFO scheduler.DAGScheduler: ResultStage 1 (collect at ReadCoverageSuite.scala:70) finished in 0.009 s
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Job 0 finished: collect at ReadCoverageSuite.scala:70, took 0.048494 s
19/03/14 09:26:38 INFO spark.MapOutputTrackerMasterEndpoint: MapOutputTrackerMasterEndpoint stopped!
19/03/14 09:26:38 INFO storage.MemoryStore: MemoryStore cleared
19/03/14 09:26:38 INFO storage.BlockManager: BlockManager stopped
19/03/14 09:26:38 INFO storage.BlockManagerMaster: BlockManagerMaster stopped
19/03/14 09:26:38 INFO scheduler.OutputCommitCoordinator$OutputCommitCoordinatorEndpoint: OutputCommitCoordinator stopped!
19/03/14 09:26:38 INFO remote.RemoteActorRefProvider$RemotingTerminator: Shutting down remote daemon.
19/03/14 09:26:38 INFO remote.RemoteActorRefProvider$RemotingTerminator: Remote daemon shut down; proceeding with flushing remote transports.
19/03/14 09:26:38 INFO spark.SparkContext: Successfully stopped SparkContext
- generate coverage observations for several mapped reads, and an unaligned read
19/03/14 09:26:38 INFO spark.SparkContext: Running Spark version 1.6.1
19/03/14 09:26:38 INFO remote.RemoteActorRefProvider$RemotingTerminator: Remoting shut down.
19/03/14 09:26:38 INFO spark.SecurityManager: Changing view acls to: jenkins
19/03/14 09:26:38 INFO spark.SecurityManager: Changing modify acls to: jenkins
19/03/14 09:26:38 INFO spark.SecurityManager: SecurityManager: authentication disabled; ui acls disabled; users with view permissions: Set(jenkins); users with modify permissions: Set(jenkins)
ContaminationEstimatorSuite:
19/03/14 09:26:38 INFO util.Utils: Successfully started service 'sparkDriver' on port 55193.
19/03/14 09:26:38 INFO slf4j.Slf4jLogger: Slf4jLogger started
19/03/14 09:26:38 INFO Remoting: Starting remoting
19/03/14 09:26:38 INFO Remoting: Remoting started; listening on addresses :[akka.tcp://sparkDriverActorSystem@localhost:55194]
19/03/14 09:26:38 INFO util.Utils: Successfully started service 'sparkDriverActorSystem' on port 55194.
19/03/14 09:26:38 INFO spark.SparkEnv: Registering MapOutputTracker
19/03/14 09:26:38 INFO spark.SparkEnv: Registering BlockManagerMaster
19/03/14 09:26:38 INFO storage.DiskBlockManager: Created local directory at /tmp/blockmgr-da830d44-3267-48a9-882e-d94674b4c955
19/03/14 09:26:38 INFO storage.MemoryStore: MemoryStore started with capacity 521.3 MB
19/03/14 09:26:38 INFO spark.SparkEnv: Registering OutputCommitCoordinator
19/03/14 09:26:38 INFO executor.Executor: Starting executor ID driver on host localhost
19/03/14 09:26:38 INFO util.Utils: Successfully started service 'org.apache.spark.network.netty.NettyBlockTransferService' on port 42107.
19/03/14 09:26:38 INFO netty.NettyBlockTransferService: Server created on 42107
19/03/14 09:26:38 INFO storage.BlockManagerMaster: Trying to register BlockManager
19/03/14 09:26:38 INFO storage.BlockManagerMasterEndpoint: Registering block manager localhost:42107 with 521.3 MB RAM, BlockManagerId(driver, localhost, 42107)
19/03/14 09:26:38 INFO storage.BlockManagerMaster: Registered BlockManager
19/03/14 09:26:38 INFO spark.SparkContext: Starting job: collect at BroadcastRegionJoin.scala:100
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Registering RDD 6 (keyBy at BroadcastRegionJoin.scala:98)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Got job 0 (collect at BroadcastRegionJoin.scala:100) with 4 output partitions
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Final stage: ResultStage 1 (collect at BroadcastRegionJoin.scala:100)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 0)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Missing parents: List(ShuffleMapStage 0)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 0 (MapPartitionsRDD[6] at keyBy at BroadcastRegionJoin.scala:98), which has no missing parents
19/03/14 09:26:38 INFO storage.MemoryStore: Block broadcast_0 stored as values in memory (estimated size 4.1 KB, free 4.1 KB)
19/03/14 09:26:38 INFO storage.MemoryStore: Block broadcast_0_piece0 stored as bytes in memory (estimated size 2.2 KB, free 6.3 KB)
19/03/14 09:26:38 INFO storage.BlockManagerInfo: Added broadcast_0_piece0 in memory on localhost:42107 (size: 2.2 KB, free: 521.2 MB)
19/03/14 09:26:38 INFO spark.SparkContext: Created broadcast 0 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 0 (MapPartitionsRDD[6] at keyBy at BroadcastRegionJoin.scala:98)
19/03/14 09:26:38 INFO scheduler.TaskSchedulerImpl: Adding task set 0.0 with 4 tasks
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 0.0 (TID 0, localhost, partition 0,PROCESS_LOCAL, 2082 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 0.0 (TID 1, localhost, partition 1,PROCESS_LOCAL, 2082 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 0.0 (TID 2, localhost, partition 2,PROCESS_LOCAL, 2082 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 0.0 (TID 3, localhost, partition 3,PROCESS_LOCAL, 2128 bytes)
19/03/14 09:26:38 INFO executor.Executor: Running task 0.0 in stage 0.0 (TID 0)
19/03/14 09:26:38 INFO executor.Executor: Running task 1.0 in stage 0.0 (TID 1)
19/03/14 09:26:38 INFO executor.Executor: Running task 2.0 in stage 0.0 (TID 2)
19/03/14 09:26:38 INFO executor.Executor: Running task 3.0 in stage 0.0 (TID 3)
19/03/14 09:26:38 INFO executor.Executor: Finished task 0.0 in stage 0.0 (TID 0). 1090 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 1.0 in stage 0.0 (TID 1). 1090 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 2.0 in stage 0.0 (TID 2). 1090 bytes result sent to driver
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 0.0 (TID 0) in 16 ms on localhost (1/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 0.0 (TID 1) in 15 ms on localhost (2/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 0.0 (TID 2) in 14 ms on localhost (3/4)
19/03/14 09:26:38 INFO executor.Executor: Finished task 3.0 in stage 0.0 (TID 3). 1090 bytes result sent to driver
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 0.0 (TID 3) in 17 ms on localhost (4/4)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: ShuffleMapStage 0 (keyBy at BroadcastRegionJoin.scala:98) finished in 0.022 s
19/03/14 09:26:38 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 0.0, whose tasks have all completed, from pool 
19/03/14 09:26:38 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:38 INFO scheduler.DAGScheduler: running: Set()
19/03/14 09:26:38 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 1)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Submitting ResultStage 1 (ShuffledRDD[7] at groupByKey at BroadcastRegionJoin.scala:99), which has no missing parents
19/03/14 09:26:38 INFO storage.MemoryStore: Block broadcast_1 stored as values in memory (estimated size 4.9 KB, free 11.2 KB)
19/03/14 09:26:38 INFO storage.MemoryStore: Block broadcast_1_piece0 stored as bytes in memory (estimated size 2.5 KB, free 13.7 KB)
19/03/14 09:26:38 INFO storage.BlockManagerInfo: Added broadcast_1_piece0 in memory on localhost:42107 (size: 2.5 KB, free: 521.2 MB)
19/03/14 09:26:38 INFO spark.SparkContext: Created broadcast 1 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ResultStage 1 (ShuffledRDD[7] at groupByKey at BroadcastRegionJoin.scala:99)
19/03/14 09:26:38 INFO scheduler.TaskSchedulerImpl: Adding task set 1.0 with 4 tasks
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 1.0 (TID 4, localhost, partition 0,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 1.0 (TID 5, localhost, partition 1,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 1.0 (TID 6, localhost, partition 2,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 1.0 (TID 7, localhost, partition 3,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:38 INFO executor.Executor: Running task 0.0 in stage 1.0 (TID 4)
19/03/14 09:26:38 INFO executor.Executor: Running task 3.0 in stage 1.0 (TID 7)
19/03/14 09:26:38 INFO executor.Executor: Running task 1.0 in stage 1.0 (TID 5)
19/03/14 09:26:38 INFO executor.Executor: Running task 2.0 in stage 1.0 (TID 6)
19/03/14 09:26:38 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:38 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:38 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:38 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:38 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:38 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:38 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:38 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:38 INFO executor.Executor: Finished task 0.0 in stage 1.0 (TID 4). 1124 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 3.0 in stage 1.0 (TID 7). 1124 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 2.0 in stage 1.0 (TID 6). 1228 bytes result sent to driver
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 1.0 (TID 4) in 7 ms on localhost (1/4)
19/03/14 09:26:38 INFO executor.Executor: Finished task 1.0 in stage 1.0 (TID 5). 1124 bytes result sent to driver
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 1.0 (TID 7) in 7 ms on localhost (2/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 1.0 (TID 5) in 9 ms on localhost (3/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 1.0 (TID 6) in 10 ms on localhost (4/4)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: ResultStage 1 (collect at BroadcastRegionJoin.scala:100) finished in 0.011 s
19/03/14 09:26:38 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 1.0, whose tasks have all completed, from pool 
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Job 0 finished: collect at BroadcastRegionJoin.scala:100, took 0.045601 s
19/03/14 09:26:38 INFO storage.MemoryStore: Block broadcast_2 stored as values in memory (estimated size 216.0 B, free 13.9 KB)
19/03/14 09:26:38 INFO storage.MemoryStore: Block broadcast_2_piece0 stored as bytes in memory (estimated size 124.0 B, free 14.0 KB)
19/03/14 09:26:38 INFO storage.BlockManagerInfo: Added broadcast_2_piece0 in memory on localhost:42107 (size: 124.0 B, free: 521.2 MB)
19/03/14 09:26:38 INFO spark.SparkContext: Created broadcast 2 from broadcast at BroadcastRegionJoin.scala:109
19/03/14 09:26:38 INFO spark.SparkContext: Starting job: count at ContaminationEstimator.scala:85
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Registering RDD 8 (map at BroadcastRegionJoin.scala:113)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Registering RDD 10 (flatMap at BroadcastRegionJoin.scala:118)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Got job 1 (count at ContaminationEstimator.scala:85) with 4 output partitions
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Final stage: ResultStage 4 (count at ContaminationEstimator.scala:85)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 2, ShuffleMapStage 3)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Missing parents: List(ShuffleMapStage 2, ShuffleMapStage 3)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 2 (MapPartitionsRDD[8] at map at BroadcastRegionJoin.scala:113), which has no missing parents
19/03/14 09:26:38 INFO storage.MemoryStore: Block broadcast_3 stored as values in memory (estimated size 3.5 KB, free 17.5 KB)
19/03/14 09:26:38 INFO storage.MemoryStore: Block broadcast_3_piece0 stored as bytes in memory (estimated size 2.1 KB, free 19.6 KB)
19/03/14 09:26:38 INFO storage.BlockManagerInfo: Added broadcast_3_piece0 in memory on localhost:42107 (size: 2.1 KB, free: 521.2 MB)
19/03/14 09:26:38 INFO spark.SparkContext: Created broadcast 3 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 2 (MapPartitionsRDD[8] at map at BroadcastRegionJoin.scala:113)
19/03/14 09:26:38 INFO scheduler.TaskSchedulerImpl: Adding task set 2.0 with 4 tasks
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 3 (MapPartitionsRDD[10] at flatMap at BroadcastRegionJoin.scala:118), which has no missing parents
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 2.0 (TID 8, localhost, partition 0,PROCESS_LOCAL, 2082 bytes)
19/03/14 09:26:38 INFO storage.MemoryStore: Block broadcast_4 stored as values in memory (estimated size 3.9 KB, free 23.5 KB)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 2.0 (TID 9, localhost, partition 1,PROCESS_LOCAL, 2082 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 2.0 (TID 10, localhost, partition 2,PROCESS_LOCAL, 2082 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 2.0 (TID 11, localhost, partition 3,PROCESS_LOCAL, 2128 bytes)
19/03/14 09:26:38 INFO storage.MemoryStore: Block broadcast_4_piece0 stored as bytes in memory (estimated size 2.2 KB, free 25.6 KB)
19/03/14 09:26:38 INFO executor.Executor: Running task 2.0 in stage 2.0 (TID 10)
19/03/14 09:26:38 INFO executor.Executor: Running task 3.0 in stage 2.0 (TID 11)
19/03/14 09:26:38 INFO executor.Executor: Running task 1.0 in stage 2.0 (TID 9)
19/03/14 09:26:38 INFO executor.Executor: Running task 0.0 in stage 2.0 (TID 8)
19/03/14 09:26:38 INFO storage.BlockManagerInfo: Added broadcast_4_piece0 in memory on localhost:42107 (size: 2.2 KB, free: 521.2 MB)
19/03/14 09:26:38 INFO spark.SparkContext: Created broadcast 4 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 3 (MapPartitionsRDD[10] at flatMap at BroadcastRegionJoin.scala:118)
19/03/14 09:26:38 INFO scheduler.TaskSchedulerImpl: Adding task set 3.0 with 4 tasks
19/03/14 09:26:38 INFO executor.Executor: Finished task 0.0 in stage 2.0 (TID 8). 1090 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 1.0 in stage 2.0 (TID 9). 1090 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 2.0 in stage 2.0 (TID 10). 1090 bytes result sent to driver
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 3.0 (TID 12, localhost, partition 0,PROCESS_LOCAL, 2279 bytes)
19/03/14 09:26:38 INFO executor.Executor: Running task 0.0 in stage 3.0 (TID 12)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 3.0 (TID 13, localhost, partition 1,PROCESS_LOCAL, 2411 bytes)
19/03/14 09:26:38 INFO executor.Executor: Running task 1.0 in stage 3.0 (TID 13)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 2.0 (TID 8) in 12 ms on localhost (1/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 3.0 (TID 14, localhost, partition 2,PROCESS_LOCAL, 2279 bytes)
19/03/14 09:26:38 INFO executor.Executor: Running task 2.0 in stage 3.0 (TID 14)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 2.0 (TID 9) in 13 ms on localhost (2/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 2.0 (TID 10) in 13 ms on localhost (3/4)
19/03/14 09:26:38 INFO executor.Executor: Finished task 3.0 in stage 2.0 (TID 11). 1090 bytes result sent to driver
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 3.0 (TID 15, localhost, partition 3,PROCESS_LOCAL, 2411 bytes)
19/03/14 09:26:38 INFO executor.Executor: Running task 3.0 in stage 3.0 (TID 15)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 2.0 (TID 11) in 15 ms on localhost (4/4)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: ShuffleMapStage 2 (map at BroadcastRegionJoin.scala:113) finished in 0.020 s
19/03/14 09:26:38 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 2.0, whose tasks have all completed, from pool 
19/03/14 09:26:38 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:38 INFO scheduler.DAGScheduler: running: Set(ShuffleMapStage 3)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 4)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:38 INFO executor.Executor: Finished task 0.0 in stage 3.0 (TID 12). 1090 bytes result sent to driver
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 3.0 (TID 12) in 13 ms on localhost (1/4)
19/03/14 09:26:38 INFO executor.Executor: Finished task 1.0 in stage 3.0 (TID 13). 1090 bytes result sent to driver
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 3.0 (TID 13) in 12 ms on localhost (2/4)
19/03/14 09:26:38 INFO executor.Executor: Finished task 2.0 in stage 3.0 (TID 14). 1090 bytes result sent to driver
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 3.0 (TID 14) in 13 ms on localhost (3/4)
19/03/14 09:26:38 INFO executor.Executor: Finished task 3.0 in stage 3.0 (TID 15). 1090 bytes result sent to driver
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 3.0 (TID 15) in 18 ms on localhost (4/4)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: ShuffleMapStage 3 (flatMap at BroadcastRegionJoin.scala:118) finished in 0.028 s
19/03/14 09:26:38 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:38 INFO scheduler.DAGScheduler: running: Set()
19/03/14 09:26:38 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 3.0, whose tasks have all completed, from pool 
19/03/14 09:26:38 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 4)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Submitting ResultStage 4 (MapPartitionsRDD[16] at flatMap at ContaminationEstimator.scala:78), which has no missing parents
19/03/14 09:26:38 INFO storage.MemoryStore: Block broadcast_5 stored as values in memory (estimated size 3.9 KB, free 29.5 KB)
19/03/14 09:26:38 INFO storage.MemoryStore: Block broadcast_5_piece0 stored as bytes in memory (estimated size 2.1 KB, free 31.6 KB)
19/03/14 09:26:38 INFO storage.BlockManagerInfo: Added broadcast_5_piece0 in memory on localhost:42107 (size: 2.1 KB, free: 521.2 MB)
19/03/14 09:26:38 INFO spark.SparkContext: Created broadcast 5 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ResultStage 4 (MapPartitionsRDD[16] at flatMap at ContaminationEstimator.scala:78)
19/03/14 09:26:38 INFO scheduler.TaskSchedulerImpl: Adding task set 4.0 with 4 tasks
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 4.0 (TID 16, localhost, partition 0,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 4.0 (TID 17, localhost, partition 1,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 4.0 (TID 18, localhost, partition 2,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 4.0 (TID 19, localhost, partition 3,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO executor.Executor: Running task 1.0 in stage 4.0 (TID 17)
19/03/14 09:26:38 INFO executor.Executor: Running task 0.0 in stage 4.0 (TID 16)
19/03/14 09:26:38 INFO executor.Executor: Running task 3.0 in stage 4.0 (TID 19)
19/03/14 09:26:38 INFO executor.Executor: Running task 2.0 in stage 4.0 (TID 18)
19/03/14 09:26:38 INFO spark.CacheManager: Partition rdd_16_1 not found, computing it
19/03/14 09:26:38 INFO spark.CacheManager: Partition rdd_16_2 not found, computing it
19/03/14 09:26:38 INFO spark.CacheManager: Partition rdd_16_3 not found, computing it
19/03/14 09:26:38 INFO spark.CacheManager: Partition rdd_16_0 not found, computing it
19/03/14 09:26:38 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:38 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:38 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:38 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:38 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:38 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:38 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:38 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:38 INFO storage.ShuffleBlockFetcherIterator: Getting 4 non-empty blocks out of 4 blocks
19/03/14 09:26:38 INFO storage.ShuffleBlockFetcherIterator: Getting 4 non-empty blocks out of 4 blocks
19/03/14 09:26:38 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:38 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:38 INFO storage.ShuffleBlockFetcherIterator: Getting 4 non-empty blocks out of 4 blocks
19/03/14 09:26:38 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 0 ms
19/03/14 09:26:38 INFO storage.ShuffleBlockFetcherIterator: Getting 4 non-empty blocks out of 4 blocks
19/03/14 09:26:38 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in 1 ms
19/03/14 09:26:38 INFO storage.MemoryStore: Block rdd_16_1 stored as values in memory (estimated size 16.0 B, free 31.6 KB)
19/03/14 09:26:38 INFO storage.MemoryStore: Block rdd_16_3 stored as values in memory (estimated size 16.0 B, free 31.6 KB)
19/03/14 09:26:38 INFO storage.BlockManagerInfo: Added rdd_16_1 in memory on localhost:42107 (size: 16.0 B, free: 521.2 MB)
19/03/14 09:26:38 INFO storage.MemoryStore: Block rdd_16_0 stored as values in memory (estimated size 16.0 B, free 31.6 KB)
19/03/14 09:26:38 INFO storage.BlockManagerInfo: Added rdd_16_3 in memory on localhost:42107 (size: 16.0 B, free: 521.2 MB)
19/03/14 09:26:38 INFO storage.BlockManagerInfo: Added rdd_16_0 in memory on localhost:42107 (size: 16.0 B, free: 521.2 MB)
19/03/14 09:26:38 INFO executor.Executor: Finished task 1.0 in stage 4.0 (TID 17). 1703 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 3.0 in stage 4.0 (TID 19). 1703 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 0.0 in stage 4.0 (TID 16). 1703 bytes result sent to driver
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 4.0 (TID 17) in 10 ms on localhost (1/4)
19/03/14 09:26:38 INFO storage.MemoryStore: Block rdd_16_2 stored as values in memory (estimated size 616.0 B, free 32.2 KB)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 4.0 (TID 16) in 11 ms on localhost (2/4)
19/03/14 09:26:38 INFO storage.BlockManagerInfo: Added rdd_16_2 in memory on localhost:42107 (size: 616.0 B, free: 521.2 MB)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 4.0 (TID 19) in 10 ms on localhost (3/4)
19/03/14 09:26:38 INFO executor.Executor: Finished task 2.0 in stage 4.0 (TID 18). 1703 bytes result sent to driver
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 4.0 (TID 18) in 13 ms on localhost (4/4)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: ResultStage 4 (count at ContaminationEstimator.scala:85) finished in 0.014 s
19/03/14 09:26:38 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 4.0, whose tasks have all completed, from pool 
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Job 1 finished: count at ContaminationEstimator.scala:85, took 0.060372 s
19/03/14 09:26:38 INFO spark.SparkContext: Starting job: reduce at ContaminationEstimator.scala:115
19/03/14 09:26:38 INFO spark.MapOutputTrackerMaster: Size of output statuses for shuffle 1 is 158 bytes
19/03/14 09:26:38 INFO spark.MapOutputTrackerMaster: Size of output statuses for shuffle 2 is 160 bytes
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Got job 2 (reduce at ContaminationEstimator.scala:115) with 4 output partitions
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Final stage: ResultStage 7 (reduce at ContaminationEstimator.scala:115)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 5, ShuffleMapStage 6)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Missing parents: List()
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Submitting ResultStage 7 (MapPartitionsRDD[17] at map at ContaminationEstimator.scala:114), which has no missing parents
19/03/14 09:26:38 INFO storage.MemoryStore: Block broadcast_6 stored as values in memory (estimated size 4.4 KB, free 36.6 KB)
19/03/14 09:26:38 INFO storage.MemoryStore: Block broadcast_6_piece0 stored as bytes in memory (estimated size 2.3 KB, free 38.9 KB)
19/03/14 09:26:38 INFO storage.BlockManagerInfo: Added broadcast_6_piece0 in memory on localhost:42107 (size: 2.3 KB, free: 521.2 MB)
19/03/14 09:26:38 INFO spark.SparkContext: Created broadcast 6 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ResultStage 7 (MapPartitionsRDD[17] at map at ContaminationEstimator.scala:114)
19/03/14 09:26:38 INFO scheduler.TaskSchedulerImpl: Adding task set 7.0 with 4 tasks
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 7.0 (TID 20, localhost, partition 0,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 7.0 (TID 21, localhost, partition 1,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 7.0 (TID 22, localhost, partition 2,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 7.0 (TID 23, localhost, partition 3,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO executor.Executor: Running task 0.0 in stage 7.0 (TID 20)
19/03/14 09:26:38 INFO executor.Executor: Running task 3.0 in stage 7.0 (TID 23)
19/03/14 09:26:38 INFO executor.Executor: Running task 2.0 in stage 7.0 (TID 22)
19/03/14 09:26:38 INFO executor.Executor: Running task 1.0 in stage 7.0 (TID 21)
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_0 locally
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_3 locally
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_2 locally
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_1 locally
19/03/14 09:26:38 INFO executor.Executor: Finished task 3.0 in stage 7.0 (TID 23). 2058 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 0.0 in stage 7.0 (TID 20). 2058 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 1.0 in stage 7.0 (TID 21). 2058 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 2.0 in stage 7.0 (TID 22). 2066 bytes result sent to driver
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 7.0 (TID 23) in 4 ms on localhost (1/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 7.0 (TID 20) in 6 ms on localhost (2/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 7.0 (TID 21) in 6 ms on localhost (3/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 7.0 (TID 22) in 6 ms on localhost (4/4)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: ResultStage 7 (reduce at ContaminationEstimator.scala:115) finished in 0.007 s
19/03/14 09:26:38 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 7.0, whose tasks have all completed, from pool 
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Job 2 finished: reduce at ContaminationEstimator.scala:115, took 0.014575 s
19/03/14 09:26:38 INFO spark.SparkContext: Starting job: reduce at ContaminationEstimator.scala:115
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Got job 3 (reduce at ContaminationEstimator.scala:115) with 4 output partitions
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Final stage: ResultStage 10 (reduce at ContaminationEstimator.scala:115)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 9, ShuffleMapStage 8)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Missing parents: List()
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Submitting ResultStage 10 (MapPartitionsRDD[18] at map at ContaminationEstimator.scala:114), which has no missing parents
19/03/14 09:26:38 INFO storage.MemoryStore: Block broadcast_7 stored as values in memory (estimated size 4.4 KB, free 43.2 KB)
19/03/14 09:26:38 INFO storage.MemoryStore: Block broadcast_7_piece0 stored as bytes in memory (estimated size 2.3 KB, free 45.5 KB)
19/03/14 09:26:38 INFO storage.BlockManagerInfo: Added broadcast_7_piece0 in memory on localhost:42107 (size: 2.3 KB, free: 521.2 MB)
19/03/14 09:26:38 INFO spark.SparkContext: Created broadcast 7 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ResultStage 10 (MapPartitionsRDD[18] at map at ContaminationEstimator.scala:114)
19/03/14 09:26:38 INFO scheduler.TaskSchedulerImpl: Adding task set 10.0 with 4 tasks
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 10.0 (TID 24, localhost, partition 0,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 10.0 (TID 25, localhost, partition 1,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 10.0 (TID 26, localhost, partition 2,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 10.0 (TID 27, localhost, partition 3,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO executor.Executor: Running task 0.0 in stage 10.0 (TID 24)
19/03/14 09:26:38 INFO executor.Executor: Running task 1.0 in stage 10.0 (TID 25)
19/03/14 09:26:38 INFO executor.Executor: Running task 2.0 in stage 10.0 (TID 26)
19/03/14 09:26:38 INFO executor.Executor: Running task 3.0 in stage 10.0 (TID 27)
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_3 locally
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_0 locally
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_2 locally
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_1 locally
19/03/14 09:26:38 INFO executor.Executor: Finished task 2.0 in stage 10.0 (TID 26). 2066 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 3.0 in stage 10.0 (TID 27). 2058 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 0.0 in stage 10.0 (TID 24). 2058 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 1.0 in stage 10.0 (TID 25). 2058 bytes result sent to driver
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 10.0 (TID 26) in 4 ms on localhost (1/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 10.0 (TID 27) in 5 ms on localhost (2/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 10.0 (TID 24) in 6 ms on localhost (3/4)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: ResultStage 10 (reduce at ContaminationEstimator.scala:115) finished in 0.006 s
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 10.0 (TID 25) in 5 ms on localhost (4/4)
19/03/14 09:26:38 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 10.0, whose tasks have all completed, from pool 
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Job 3 finished: reduce at ContaminationEstimator.scala:115, took 0.012474 s
19/03/14 09:26:38 INFO spark.SparkContext: Starting job: reduce at ContaminationEstimator.scala:115
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Got job 4 (reduce at ContaminationEstimator.scala:115) with 4 output partitions
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Final stage: ResultStage 13 (reduce at ContaminationEstimator.scala:115)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 12, ShuffleMapStage 11)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Missing parents: List()
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Submitting ResultStage 13 (MapPartitionsRDD[19] at map at ContaminationEstimator.scala:114), which has no missing parents
19/03/14 09:26:38 INFO storage.MemoryStore: Block broadcast_8 stored as values in memory (estimated size 4.4 KB, free 49.9 KB)
19/03/14 09:26:38 INFO storage.MemoryStore: Block broadcast_8_piece0 stored as bytes in memory (estimated size 2.3 KB, free 52.1 KB)
19/03/14 09:26:38 INFO storage.BlockManagerInfo: Added broadcast_8_piece0 in memory on localhost:42107 (size: 2.3 KB, free: 521.2 MB)
19/03/14 09:26:38 INFO spark.SparkContext: Created broadcast 8 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ResultStage 13 (MapPartitionsRDD[19] at map at ContaminationEstimator.scala:114)
19/03/14 09:26:38 INFO scheduler.TaskSchedulerImpl: Adding task set 13.0 with 4 tasks
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 13.0 (TID 28, localhost, partition 0,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 13.0 (TID 29, localhost, partition 1,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 13.0 (TID 30, localhost, partition 2,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 13.0 (TID 31, localhost, partition 3,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO executor.Executor: Running task 0.0 in stage 13.0 (TID 28)
19/03/14 09:26:38 INFO executor.Executor: Running task 3.0 in stage 13.0 (TID 31)
19/03/14 09:26:38 INFO executor.Executor: Running task 2.0 in stage 13.0 (TID 30)
19/03/14 09:26:38 INFO executor.Executor: Running task 1.0 in stage 13.0 (TID 29)
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_0 locally
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_1 locally
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_2 locally
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_3 locally
19/03/14 09:26:38 INFO executor.Executor: Finished task 0.0 in stage 13.0 (TID 28). 2058 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 1.0 in stage 13.0 (TID 29). 2058 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 2.0 in stage 13.0 (TID 30). 2066 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 3.0 in stage 13.0 (TID 31). 2058 bytes result sent to driver
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 13.0 (TID 28) in 6 ms on localhost (1/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 13.0 (TID 29) in 6 ms on localhost (2/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 13.0 (TID 30) in 6 ms on localhost (3/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 13.0 (TID 31) in 6 ms on localhost (4/4)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: ResultStage 13 (reduce at ContaminationEstimator.scala:115) finished in 0.007 s
19/03/14 09:26:38 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 13.0, whose tasks have all completed, from pool 
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Job 4 finished: reduce at ContaminationEstimator.scala:115, took 0.013502 s
19/03/14 09:26:38 INFO spark.SparkContext: Starting job: reduce at ContaminationEstimator.scala:115
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Got job 5 (reduce at ContaminationEstimator.scala:115) with 4 output partitions
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Final stage: ResultStage 16 (reduce at ContaminationEstimator.scala:115)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 15, ShuffleMapStage 14)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Missing parents: List()
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Submitting ResultStage 16 (MapPartitionsRDD[20] at map at ContaminationEstimator.scala:114), which has no missing parents
19/03/14 09:26:38 INFO storage.MemoryStore: Block broadcast_9 stored as values in memory (estimated size 4.4 KB, free 56.5 KB)
19/03/14 09:26:38 INFO storage.MemoryStore: Block broadcast_9_piece0 stored as bytes in memory (estimated size 2.3 KB, free 58.7 KB)
19/03/14 09:26:38 INFO storage.BlockManagerInfo: Added broadcast_9_piece0 in memory on localhost:42107 (size: 2.3 KB, free: 521.2 MB)
19/03/14 09:26:38 INFO spark.SparkContext: Created broadcast 9 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ResultStage 16 (MapPartitionsRDD[20] at map at ContaminationEstimator.scala:114)
19/03/14 09:26:38 INFO scheduler.TaskSchedulerImpl: Adding task set 16.0 with 4 tasks
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 16.0 (TID 32, localhost, partition 0,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 16.0 (TID 33, localhost, partition 1,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 16.0 (TID 34, localhost, partition 2,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 16.0 (TID 35, localhost, partition 3,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO executor.Executor: Running task 1.0 in stage 16.0 (TID 33)
19/03/14 09:26:38 INFO executor.Executor: Running task 3.0 in stage 16.0 (TID 35)
19/03/14 09:26:38 INFO executor.Executor: Running task 0.0 in stage 16.0 (TID 32)
19/03/14 09:26:38 INFO executor.Executor: Running task 2.0 in stage 16.0 (TID 34)
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_1 locally
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_2 locally
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_3 locally
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_0 locally
19/03/14 09:26:38 INFO executor.Executor: Finished task 1.0 in stage 16.0 (TID 33). 2058 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 2.0 in stage 16.0 (TID 34). 2066 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 3.0 in stage 16.0 (TID 35). 2058 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 0.0 in stage 16.0 (TID 32). 2058 bytes result sent to driver
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 16.0 (TID 33) in 5 ms on localhost (1/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 16.0 (TID 35) in 5 ms on localhost (2/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 16.0 (TID 34) in 6 ms on localhost (3/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 16.0 (TID 32) in 6 ms on localhost (4/4)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: ResultStage 16 (reduce at ContaminationEstimator.scala:115) finished in 0.007 s
19/03/14 09:26:38 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 16.0, whose tasks have all completed, from pool 
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Job 5 finished: reduce at ContaminationEstimator.scala:115, took 0.013433 s
19/03/14 09:26:38 INFO spark.SparkContext: Starting job: reduce at ContaminationEstimator.scala:115
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Got job 6 (reduce at ContaminationEstimator.scala:115) with 4 output partitions
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Final stage: ResultStage 19 (reduce at ContaminationEstimator.scala:115)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 17, ShuffleMapStage 18)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Missing parents: List()
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Submitting ResultStage 19 (MapPartitionsRDD[21] at map at ContaminationEstimator.scala:114), which has no missing parents
19/03/14 09:26:38 INFO storage.MemoryStore: Block broadcast_10 stored as values in memory (estimated size 4.4 KB, free 63.1 KB)
19/03/14 09:26:38 INFO storage.MemoryStore: Block broadcast_10_piece0 stored as bytes in memory (estimated size 2.3 KB, free 65.4 KB)
19/03/14 09:26:38 INFO storage.BlockManagerInfo: Added broadcast_10_piece0 in memory on localhost:42107 (size: 2.3 KB, free: 521.2 MB)
19/03/14 09:26:38 INFO spark.SparkContext: Created broadcast 10 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ResultStage 19 (MapPartitionsRDD[21] at map at ContaminationEstimator.scala:114)
19/03/14 09:26:38 INFO scheduler.TaskSchedulerImpl: Adding task set 19.0 with 4 tasks
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 19.0 (TID 36, localhost, partition 0,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 19.0 (TID 37, localhost, partition 1,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 19.0 (TID 38, localhost, partition 2,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 19.0 (TID 39, localhost, partition 3,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO executor.Executor: Running task 0.0 in stage 19.0 (TID 36)
19/03/14 09:26:38 INFO executor.Executor: Running task 3.0 in stage 19.0 (TID 39)
19/03/14 09:26:38 INFO executor.Executor: Running task 2.0 in stage 19.0 (TID 38)
19/03/14 09:26:38 INFO executor.Executor: Running task 1.0 in stage 19.0 (TID 37)
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_0 locally
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_3 locally
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_2 locally
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_1 locally
19/03/14 09:26:38 INFO executor.Executor: Finished task 3.0 in stage 19.0 (TID 39). 2058 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 0.0 in stage 19.0 (TID 36). 2058 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 2.0 in stage 19.0 (TID 38). 2066 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 1.0 in stage 19.0 (TID 37). 2058 bytes result sent to driver
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 19.0 (TID 39) in 4 ms on localhost (1/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 19.0 (TID 36) in 5 ms on localhost (2/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 19.0 (TID 38) in 5 ms on localhost (3/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 19.0 (TID 37) in 6 ms on localhost (4/4)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: ResultStage 19 (reduce at ContaminationEstimator.scala:115) finished in 0.006 s
19/03/14 09:26:38 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 19.0, whose tasks have all completed, from pool 
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Job 6 finished: reduce at ContaminationEstimator.scala:115, took 0.012924 s
19/03/14 09:26:38 INFO spark.SparkContext: Starting job: reduce at ContaminationEstimator.scala:115
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Got job 7 (reduce at ContaminationEstimator.scala:115) with 4 output partitions
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Final stage: ResultStage 22 (reduce at ContaminationEstimator.scala:115)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 20, ShuffleMapStage 21)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Missing parents: List()
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Submitting ResultStage 22 (MapPartitionsRDD[22] at map at ContaminationEstimator.scala:114), which has no missing parents
19/03/14 09:26:38 INFO storage.MemoryStore: Block broadcast_11 stored as values in memory (estimated size 4.4 KB, free 69.7 KB)
19/03/14 09:26:38 INFO storage.MemoryStore: Block broadcast_11_piece0 stored as bytes in memory (estimated size 2.3 KB, free 72.0 KB)
19/03/14 09:26:38 INFO storage.BlockManagerInfo: Added broadcast_11_piece0 in memory on localhost:42107 (size: 2.3 KB, free: 521.2 MB)
19/03/14 09:26:38 INFO spark.SparkContext: Created broadcast 11 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ResultStage 22 (MapPartitionsRDD[22] at map at ContaminationEstimator.scala:114)
19/03/14 09:26:38 INFO scheduler.TaskSchedulerImpl: Adding task set 22.0 with 4 tasks
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 22.0 (TID 40, localhost, partition 0,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 22.0 (TID 41, localhost, partition 1,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 22.0 (TID 42, localhost, partition 2,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 22.0 (TID 43, localhost, partition 3,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO executor.Executor: Running task 1.0 in stage 22.0 (TID 41)
19/03/14 09:26:38 INFO executor.Executor: Running task 0.0 in stage 22.0 (TID 40)
19/03/14 09:26:38 INFO executor.Executor: Running task 2.0 in stage 22.0 (TID 42)
19/03/14 09:26:38 INFO executor.Executor: Running task 3.0 in stage 22.0 (TID 43)
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_3 locally
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_1 locally
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_0 locally
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_2 locally
19/03/14 09:26:38 INFO executor.Executor: Finished task 3.0 in stage 22.0 (TID 43). 2058 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 1.0 in stage 22.0 (TID 41). 2058 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 0.0 in stage 22.0 (TID 40). 2058 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 2.0 in stage 22.0 (TID 42). 2066 bytes result sent to driver
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 22.0 (TID 43) in 5 ms on localhost (1/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 22.0 (TID 41) in 5 ms on localhost (2/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 22.0 (TID 42) in 5 ms on localhost (3/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 22.0 (TID 40) in 5 ms on localhost (4/4)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: ResultStage 22 (reduce at ContaminationEstimator.scala:115) finished in 0.005 s
19/03/14 09:26:38 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 22.0, whose tasks have all completed, from pool 
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Job 7 finished: reduce at ContaminationEstimator.scala:115, took 0.013011 s
19/03/14 09:26:38 INFO spark.SparkContext: Starting job: reduce at ContaminationEstimator.scala:115
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Got job 8 (reduce at ContaminationEstimator.scala:115) with 4 output partitions
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Final stage: ResultStage 25 (reduce at ContaminationEstimator.scala:115)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 24, ShuffleMapStage 23)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Missing parents: List()
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Submitting ResultStage 25 (MapPartitionsRDD[23] at map at ContaminationEstimator.scala:114), which has no missing parents
19/03/14 09:26:38 INFO storage.MemoryStore: Block broadcast_12 stored as values in memory (estimated size 4.4 KB, free 76.4 KB)
19/03/14 09:26:38 INFO storage.MemoryStore: Block broadcast_12_piece0 stored as bytes in memory (estimated size 2.3 KB, free 78.6 KB)
19/03/14 09:26:38 INFO storage.BlockManagerInfo: Added broadcast_12_piece0 in memory on localhost:42107 (size: 2.3 KB, free: 521.2 MB)
19/03/14 09:26:38 INFO spark.SparkContext: Created broadcast 12 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ResultStage 25 (MapPartitionsRDD[23] at map at ContaminationEstimator.scala:114)
19/03/14 09:26:38 INFO scheduler.TaskSchedulerImpl: Adding task set 25.0 with 4 tasks
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 25.0 (TID 44, localhost, partition 0,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 25.0 (TID 45, localhost, partition 1,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 25.0 (TID 46, localhost, partition 2,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 25.0 (TID 47, localhost, partition 3,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO executor.Executor: Running task 0.0 in stage 25.0 (TID 44)
19/03/14 09:26:38 INFO executor.Executor: Running task 3.0 in stage 25.0 (TID 47)
19/03/14 09:26:38 INFO executor.Executor: Running task 2.0 in stage 25.0 (TID 46)
19/03/14 09:26:38 INFO executor.Executor: Running task 1.0 in stage 25.0 (TID 45)
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_0 locally
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_2 locally
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_3 locally
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_1 locally
19/03/14 09:26:38 INFO executor.Executor: Finished task 0.0 in stage 25.0 (TID 44). 2058 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 2.0 in stage 25.0 (TID 46). 2066 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 1.0 in stage 25.0 (TID 45). 2058 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 3.0 in stage 25.0 (TID 47). 2058 bytes result sent to driver
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 25.0 (TID 44) in 5 ms on localhost (1/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 25.0 (TID 47) in 5 ms on localhost (2/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 25.0 (TID 45) in 6 ms on localhost (3/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 25.0 (TID 46) in 5 ms on localhost (4/4)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: ResultStage 25 (reduce at ContaminationEstimator.scala:115) finished in 0.006 s
19/03/14 09:26:38 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 25.0, whose tasks have all completed, from pool 
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Job 8 finished: reduce at ContaminationEstimator.scala:115, took 0.012594 s
19/03/14 09:26:38 INFO spark.SparkContext: Starting job: reduce at ContaminationEstimator.scala:115
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Got job 9 (reduce at ContaminationEstimator.scala:115) with 4 output partitions
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Final stage: ResultStage 28 (reduce at ContaminationEstimator.scala:115)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 27, ShuffleMapStage 26)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Missing parents: List()
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Submitting ResultStage 28 (MapPartitionsRDD[24] at map at ContaminationEstimator.scala:114), which has no missing parents
19/03/14 09:26:38 INFO storage.MemoryStore: Block broadcast_13 stored as values in memory (estimated size 4.4 KB, free 83.0 KB)
19/03/14 09:26:38 INFO storage.MemoryStore: Block broadcast_13_piece0 stored as bytes in memory (estimated size 2.3 KB, free 85.2 KB)
19/03/14 09:26:38 INFO storage.BlockManagerInfo: Added broadcast_13_piece0 in memory on localhost:42107 (size: 2.3 KB, free: 521.2 MB)
19/03/14 09:26:38 INFO spark.SparkContext: Created broadcast 13 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ResultStage 28 (MapPartitionsRDD[24] at map at ContaminationEstimator.scala:114)
19/03/14 09:26:38 INFO scheduler.TaskSchedulerImpl: Adding task set 28.0 with 4 tasks
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 28.0 (TID 48, localhost, partition 0,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 28.0 (TID 49, localhost, partition 1,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 28.0 (TID 50, localhost, partition 2,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 28.0 (TID 51, localhost, partition 3,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO executor.Executor: Running task 0.0 in stage 28.0 (TID 48)
19/03/14 09:26:38 INFO executor.Executor: Running task 3.0 in stage 28.0 (TID 51)
19/03/14 09:26:38 INFO executor.Executor: Running task 1.0 in stage 28.0 (TID 49)
19/03/14 09:26:38 INFO executor.Executor: Running task 2.0 in stage 28.0 (TID 50)
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_3 locally
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_0 locally
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_2 locally
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_1 locally
19/03/14 09:26:38 INFO executor.Executor: Finished task 3.0 in stage 28.0 (TID 51). 2058 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 2.0 in stage 28.0 (TID 50). 2066 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 1.0 in stage 28.0 (TID 49). 2058 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 0.0 in stage 28.0 (TID 48). 2058 bytes result sent to driver
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 28.0 (TID 51) in 4 ms on localhost (1/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 28.0 (TID 49) in 5 ms on localhost (2/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 28.0 (TID 50) in 5 ms on localhost (3/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 28.0 (TID 48) in 6 ms on localhost (4/4)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: ResultStage 28 (reduce at ContaminationEstimator.scala:115) finished in 0.007 s
19/03/14 09:26:38 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 28.0, whose tasks have all completed, from pool 
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Job 9 finished: reduce at ContaminationEstimator.scala:115, took 0.012092 s
19/03/14 09:26:38 INFO spark.SparkContext: Starting job: reduce at ContaminationEstimator.scala:115
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Got job 10 (reduce at ContaminationEstimator.scala:115) with 4 output partitions
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Final stage: ResultStage 31 (reduce at ContaminationEstimator.scala:115)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 30, ShuffleMapStage 29)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Missing parents: List()
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Submitting ResultStage 31 (MapPartitionsRDD[25] at map at ContaminationEstimator.scala:114), which has no missing parents
19/03/14 09:26:38 INFO storage.MemoryStore: Block broadcast_14 stored as values in memory (estimated size 4.4 KB, free 89.6 KB)
19/03/14 09:26:38 INFO storage.MemoryStore: Block broadcast_14_piece0 stored as bytes in memory (estimated size 2.3 KB, free 91.9 KB)
19/03/14 09:26:38 INFO storage.BlockManagerInfo: Added broadcast_14_piece0 in memory on localhost:42107 (size: 2.3 KB, free: 521.2 MB)
19/03/14 09:26:38 INFO spark.SparkContext: Created broadcast 14 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ResultStage 31 (MapPartitionsRDD[25] at map at ContaminationEstimator.scala:114)
19/03/14 09:26:38 INFO scheduler.TaskSchedulerImpl: Adding task set 31.0 with 4 tasks
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 31.0 (TID 52, localhost, partition 0,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 31.0 (TID 53, localhost, partition 1,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 31.0 (TID 54, localhost, partition 2,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 31.0 (TID 55, localhost, partition 3,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO executor.Executor: Running task 0.0 in stage 31.0 (TID 52)
19/03/14 09:26:38 INFO executor.Executor: Running task 2.0 in stage 31.0 (TID 54)
19/03/14 09:26:38 INFO executor.Executor: Running task 1.0 in stage 31.0 (TID 53)
19/03/14 09:26:38 INFO executor.Executor: Running task 3.0 in stage 31.0 (TID 55)
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_0 locally
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_2 locally
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_1 locally
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_3 locally
19/03/14 09:26:38 INFO executor.Executor: Finished task 0.0 in stage 31.0 (TID 52). 2058 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 2.0 in stage 31.0 (TID 54). 2066 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 1.0 in stage 31.0 (TID 53). 2058 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 3.0 in stage 31.0 (TID 55). 2058 bytes result sent to driver
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 31.0 (TID 52) in 5 ms on localhost (1/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 31.0 (TID 53) in 6 ms on localhost (2/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 31.0 (TID 54) in 6 ms on localhost (3/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 31.0 (TID 55) in 5 ms on localhost (4/4)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: ResultStage 31 (reduce at ContaminationEstimator.scala:115) finished in 0.006 s
19/03/14 09:26:38 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 31.0, whose tasks have all completed, from pool 
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Job 10 finished: reduce at ContaminationEstimator.scala:115, took 0.012614 s
19/03/14 09:26:38 INFO spark.SparkContext: Starting job: reduce at ContaminationEstimator.scala:115
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Got job 11 (reduce at ContaminationEstimator.scala:115) with 4 output partitions
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Final stage: ResultStage 34 (reduce at ContaminationEstimator.scala:115)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 33, ShuffleMapStage 32)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Missing parents: List()
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Submitting ResultStage 34 (MapPartitionsRDD[26] at map at ContaminationEstimator.scala:114), which has no missing parents
19/03/14 09:26:38 INFO storage.MemoryStore: Block broadcast_15 stored as values in memory (estimated size 4.4 KB, free 96.2 KB)
19/03/14 09:26:38 INFO storage.MemoryStore: Block broadcast_15_piece0 stored as bytes in memory (estimated size 2.3 KB, free 98.5 KB)
19/03/14 09:26:38 INFO storage.BlockManagerInfo: Added broadcast_15_piece0 in memory on localhost:42107 (size: 2.3 KB, free: 521.2 MB)
19/03/14 09:26:38 INFO spark.SparkContext: Created broadcast 15 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ResultStage 34 (MapPartitionsRDD[26] at map at ContaminationEstimator.scala:114)
19/03/14 09:26:38 INFO scheduler.TaskSchedulerImpl: Adding task set 34.0 with 4 tasks
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 34.0 (TID 56, localhost, partition 0,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 34.0 (TID 57, localhost, partition 1,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 34.0 (TID 58, localhost, partition 2,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 34.0 (TID 59, localhost, partition 3,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO executor.Executor: Running task 0.0 in stage 34.0 (TID 56)
19/03/14 09:26:38 INFO executor.Executor: Running task 3.0 in stage 34.0 (TID 59)
19/03/14 09:26:38 INFO executor.Executor: Running task 2.0 in stage 34.0 (TID 58)
19/03/14 09:26:38 INFO executor.Executor: Running task 1.0 in stage 34.0 (TID 57)
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_0 locally
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_3 locally
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_2 locally
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_1 locally
19/03/14 09:26:38 INFO executor.Executor: Finished task 1.0 in stage 34.0 (TID 57). 2058 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 0.0 in stage 34.0 (TID 56). 2058 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 2.0 in stage 34.0 (TID 58). 2066 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 3.0 in stage 34.0 (TID 59). 2058 bytes result sent to driver
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 34.0 (TID 57) in 5 ms on localhost (1/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 34.0 (TID 56) in 6 ms on localhost (2/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 34.0 (TID 58) in 6 ms on localhost (3/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 34.0 (TID 59) in 6 ms on localhost (4/4)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: ResultStage 34 (reduce at ContaminationEstimator.scala:115) finished in 0.008 s
19/03/14 09:26:38 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 34.0, whose tasks have all completed, from pool 
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Job 11 finished: reduce at ContaminationEstimator.scala:115, took 0.016327 s
19/03/14 09:26:38 INFO spark.SparkContext: Starting job: reduce at ContaminationEstimator.scala:115
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Got job 12 (reduce at ContaminationEstimator.scala:115) with 4 output partitions
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Final stage: ResultStage 37 (reduce at ContaminationEstimator.scala:115)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 35, ShuffleMapStage 36)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Missing parents: List()
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Submitting ResultStage 37 (MapPartitionsRDD[27] at map at ContaminationEstimator.scala:114), which has no missing parents
19/03/14 09:26:38 INFO storage.MemoryStore: Block broadcast_16 stored as values in memory (estimated size 4.4 KB, free 102.9 KB)
19/03/14 09:26:38 INFO storage.MemoryStore: Block broadcast_16_piece0 stored as bytes in memory (estimated size 2.3 KB, free 105.1 KB)
19/03/14 09:26:38 INFO storage.BlockManagerInfo: Added broadcast_16_piece0 in memory on localhost:42107 (size: 2.3 KB, free: 521.2 MB)
19/03/14 09:26:38 INFO spark.SparkContext: Created broadcast 16 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ResultStage 37 (MapPartitionsRDD[27] at map at ContaminationEstimator.scala:114)
19/03/14 09:26:38 INFO scheduler.TaskSchedulerImpl: Adding task set 37.0 with 4 tasks
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 37.0 (TID 60, localhost, partition 0,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 37.0 (TID 61, localhost, partition 1,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 37.0 (TID 62, localhost, partition 2,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 37.0 (TID 63, localhost, partition 3,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO executor.Executor: Running task 0.0 in stage 37.0 (TID 60)
19/03/14 09:26:38 INFO executor.Executor: Running task 2.0 in stage 37.0 (TID 62)
19/03/14 09:26:38 INFO executor.Executor: Running task 3.0 in stage 37.0 (TID 63)
19/03/14 09:26:38 INFO executor.Executor: Running task 1.0 in stage 37.0 (TID 61)
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_2 locally
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_0 locally
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_3 locally
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_1 locally
19/03/14 09:26:38 INFO executor.Executor: Finished task 2.0 in stage 37.0 (TID 62). 2066 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 0.0 in stage 37.0 (TID 60). 2058 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 3.0 in stage 37.0 (TID 63). 2058 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 1.0 in stage 37.0 (TID 61). 2058 bytes result sent to driver
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 37.0 (TID 62) in 4 ms on localhost (1/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 37.0 (TID 60) in 5 ms on localhost (2/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 37.0 (TID 61) in 5 ms on localhost (3/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 37.0 (TID 63) in 5 ms on localhost (4/4)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: ResultStage 37 (reduce at ContaminationEstimator.scala:115) finished in 0.006 s
19/03/14 09:26:38 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 37.0, whose tasks have all completed, from pool 
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Job 12 finished: reduce at ContaminationEstimator.scala:115, took 0.012112 s
19/03/14 09:26:38 INFO spark.SparkContext: Starting job: reduce at ContaminationEstimator.scala:115
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Got job 13 (reduce at ContaminationEstimator.scala:115) with 4 output partitions
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Final stage: ResultStage 40 (reduce at ContaminationEstimator.scala:115)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 38, ShuffleMapStage 39)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Missing parents: List()
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Submitting ResultStage 40 (MapPartitionsRDD[28] at map at ContaminationEstimator.scala:114), which has no missing parents
19/03/14 09:26:38 INFO storage.MemoryStore: Block broadcast_17 stored as values in memory (estimated size 4.4 KB, free 109.5 KB)
19/03/14 09:26:38 INFO storage.MemoryStore: Block broadcast_17_piece0 stored as bytes in memory (estimated size 2.3 KB, free 111.7 KB)
19/03/14 09:26:38 INFO storage.BlockManagerInfo: Added broadcast_17_piece0 in memory on localhost:42107 (size: 2.3 KB, free: 521.2 MB)
19/03/14 09:26:38 INFO spark.SparkContext: Created broadcast 17 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ResultStage 40 (MapPartitionsRDD[28] at map at ContaminationEstimator.scala:114)
19/03/14 09:26:38 INFO scheduler.TaskSchedulerImpl: Adding task set 40.0 with 4 tasks
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 40.0 (TID 64, localhost, partition 0,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 40.0 (TID 65, localhost, partition 1,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 40.0 (TID 66, localhost, partition 2,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 40.0 (TID 67, localhost, partition 3,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO executor.Executor: Running task 1.0 in stage 40.0 (TID 65)
19/03/14 09:26:38 INFO executor.Executor: Running task 0.0 in stage 40.0 (TID 64)
19/03/14 09:26:38 INFO executor.Executor: Running task 3.0 in stage 40.0 (TID 67)
19/03/14 09:26:38 INFO executor.Executor: Running task 2.0 in stage 40.0 (TID 66)
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_1 locally
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_2 locally
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_0 locally
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_3 locally
19/03/14 09:26:38 INFO executor.Executor: Finished task 2.0 in stage 40.0 (TID 66). 2066 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 3.0 in stage 40.0 (TID 67). 2058 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 1.0 in stage 40.0 (TID 65). 2058 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 0.0 in stage 40.0 (TID 64). 2058 bytes result sent to driver
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 40.0 (TID 66) in 4 ms on localhost (1/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 40.0 (TID 67) in 4 ms on localhost (2/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 40.0 (TID 64) in 6 ms on localhost (3/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 40.0 (TID 65) in 7 ms on localhost (4/4)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: ResultStage 40 (reduce at ContaminationEstimator.scala:115) finished in 0.007 s
19/03/14 09:26:38 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 40.0, whose tasks have all completed, from pool 
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Job 13 finished: reduce at ContaminationEstimator.scala:115, took 0.016220 s
19/03/14 09:26:38 INFO spark.SparkContext: Starting job: reduce at ContaminationEstimator.scala:115
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Got job 14 (reduce at ContaminationEstimator.scala:115) with 4 output partitions
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Final stage: ResultStage 43 (reduce at ContaminationEstimator.scala:115)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 42, ShuffleMapStage 41)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Missing parents: List()
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Submitting ResultStage 43 (MapPartitionsRDD[29] at map at ContaminationEstimator.scala:114), which has no missing parents
19/03/14 09:26:38 INFO storage.MemoryStore: Block broadcast_18 stored as values in memory (estimated size 4.4 KB, free 116.1 KB)
19/03/14 09:26:38 INFO storage.MemoryStore: Block broadcast_18_piece0 stored as bytes in memory (estimated size 2.3 KB, free 118.4 KB)
19/03/14 09:26:38 INFO storage.BlockManagerInfo: Added broadcast_18_piece0 in memory on localhost:42107 (size: 2.3 KB, free: 521.2 MB)
19/03/14 09:26:38 INFO spark.SparkContext: Created broadcast 18 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ResultStage 43 (MapPartitionsRDD[29] at map at ContaminationEstimator.scala:114)
19/03/14 09:26:38 INFO scheduler.TaskSchedulerImpl: Adding task set 43.0 with 4 tasks
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 43.0 (TID 68, localhost, partition 0,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 43.0 (TID 69, localhost, partition 1,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 43.0 (TID 70, localhost, partition 2,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 43.0 (TID 71, localhost, partition 3,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO executor.Executor: Running task 2.0 in stage 43.0 (TID 70)
19/03/14 09:26:38 INFO executor.Executor: Running task 3.0 in stage 43.0 (TID 71)
19/03/14 09:26:38 INFO executor.Executor: Running task 1.0 in stage 43.0 (TID 69)
19/03/14 09:26:38 INFO executor.Executor: Running task 0.0 in stage 43.0 (TID 68)
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_2 locally
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_3 locally
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_1 locally
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_0 locally
19/03/14 09:26:38 INFO executor.Executor: Finished task 2.0 in stage 43.0 (TID 70). 2066 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 3.0 in stage 43.0 (TID 71). 2058 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 1.0 in stage 43.0 (TID 69). 2058 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 0.0 in stage 43.0 (TID 68). 2058 bytes result sent to driver
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 43.0 (TID 70) in 4 ms on localhost (1/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 43.0 (TID 71) in 5 ms on localhost (2/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 43.0 (TID 69) in 5 ms on localhost (3/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 43.0 (TID 68) in 6 ms on localhost (4/4)
19/03/14 09:26:38 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 43.0, whose tasks have all completed, from pool 
19/03/14 09:26:38 INFO scheduler.DAGScheduler: ResultStage 43 (reduce at ContaminationEstimator.scala:115) finished in 0.007 s
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Job 14 finished: reduce at ContaminationEstimator.scala:115, took 0.012555 s
19/03/14 09:26:38 INFO spark.SparkContext: Starting job: reduce at ContaminationEstimator.scala:115
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Got job 15 (reduce at ContaminationEstimator.scala:115) with 4 output partitions
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Final stage: ResultStage 46 (reduce at ContaminationEstimator.scala:115)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 45, ShuffleMapStage 44)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Missing parents: List()
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Submitting ResultStage 46 (MapPartitionsRDD[30] at map at ContaminationEstimator.scala:114), which has no missing parents
19/03/14 09:26:38 INFO storage.MemoryStore: Block broadcast_19 stored as values in memory (estimated size 4.4 KB, free 122.7 KB)
19/03/14 09:26:38 INFO storage.MemoryStore: Block broadcast_19_piece0 stored as bytes in memory (estimated size 2.3 KB, free 125.0 KB)
19/03/14 09:26:38 INFO storage.BlockManagerInfo: Added broadcast_19_piece0 in memory on localhost:42107 (size: 2.3 KB, free: 521.2 MB)
19/03/14 09:26:38 INFO spark.SparkContext: Created broadcast 19 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ResultStage 46 (MapPartitionsRDD[30] at map at ContaminationEstimator.scala:114)
19/03/14 09:26:38 INFO scheduler.TaskSchedulerImpl: Adding task set 46.0 with 4 tasks
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 46.0 (TID 72, localhost, partition 0,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 46.0 (TID 73, localhost, partition 1,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 46.0 (TID 74, localhost, partition 2,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 46.0 (TID 75, localhost, partition 3,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO executor.Executor: Running task 3.0 in stage 46.0 (TID 75)
19/03/14 09:26:38 INFO executor.Executor: Running task 0.0 in stage 46.0 (TID 72)
19/03/14 09:26:38 INFO executor.Executor: Running task 1.0 in stage 46.0 (TID 73)
19/03/14 09:26:38 INFO executor.Executor: Running task 2.0 in stage 46.0 (TID 74)
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_3 locally
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_2 locally
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_1 locally
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_0 locally
19/03/14 09:26:38 INFO executor.Executor: Finished task 2.0 in stage 46.0 (TID 74). 2066 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 3.0 in stage 46.0 (TID 75). 2058 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 1.0 in stage 46.0 (TID 73). 2058 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 0.0 in stage 46.0 (TID 72). 2058 bytes result sent to driver
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 46.0 (TID 74) in 4 ms on localhost (1/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 46.0 (TID 75) in 4 ms on localhost (2/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 46.0 (TID 73) in 5 ms on localhost (3/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 46.0 (TID 72) in 5 ms on localhost (4/4)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: ResultStage 46 (reduce at ContaminationEstimator.scala:115) finished in 0.005 s
19/03/14 09:26:38 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 46.0, whose tasks have all completed, from pool 
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Job 15 finished: reduce at ContaminationEstimator.scala:115, took 0.015186 s
19/03/14 09:26:38 INFO spark.SparkContext: Starting job: reduce at ContaminationEstimator.scala:115
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Got job 16 (reduce at ContaminationEstimator.scala:115) with 4 output partitions
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Final stage: ResultStage 49 (reduce at ContaminationEstimator.scala:115)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 48, ShuffleMapStage 47)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Missing parents: List()
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Submitting ResultStage 49 (MapPartitionsRDD[31] at map at ContaminationEstimator.scala:114), which has no missing parents
19/03/14 09:26:38 INFO storage.MemoryStore: Block broadcast_20 stored as values in memory (estimated size 4.4 KB, free 129.4 KB)
19/03/14 09:26:38 INFO storage.MemoryStore: Block broadcast_20_piece0 stored as bytes in memory (estimated size 2.3 KB, free 131.6 KB)
19/03/14 09:26:38 INFO storage.BlockManagerInfo: Added broadcast_20_piece0 in memory on localhost:42107 (size: 2.3 KB, free: 521.2 MB)
19/03/14 09:26:38 INFO spark.SparkContext: Created broadcast 20 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ResultStage 49 (MapPartitionsRDD[31] at map at ContaminationEstimator.scala:114)
19/03/14 09:26:38 INFO scheduler.TaskSchedulerImpl: Adding task set 49.0 with 4 tasks
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 49.0 (TID 76, localhost, partition 0,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 49.0 (TID 77, localhost, partition 1,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 49.0 (TID 78, localhost, partition 2,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 49.0 (TID 79, localhost, partition 3,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO executor.Executor: Running task 1.0 in stage 49.0 (TID 77)
19/03/14 09:26:38 INFO executor.Executor: Running task 2.0 in stage 49.0 (TID 78)
19/03/14 09:26:38 INFO executor.Executor: Running task 3.0 in stage 49.0 (TID 79)
19/03/14 09:26:38 INFO executor.Executor: Running task 0.0 in stage 49.0 (TID 76)
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_2 locally
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_3 locally
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_0 locally
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_1 locally
19/03/14 09:26:38 INFO executor.Executor: Finished task 3.0 in stage 49.0 (TID 79). 2058 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 2.0 in stage 49.0 (TID 78). 2066 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 0.0 in stage 49.0 (TID 76). 2058 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 1.0 in stage 49.0 (TID 77). 2058 bytes result sent to driver
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 49.0 (TID 79) in 5 ms on localhost (1/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 49.0 (TID 78) in 6 ms on localhost (2/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 49.0 (TID 76) in 6 ms on localhost (3/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 49.0 (TID 77) in 6 ms on localhost (4/4)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: ResultStage 49 (reduce at ContaminationEstimator.scala:115) finished in 0.006 s
19/03/14 09:26:38 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 49.0, whose tasks have all completed, from pool 
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Job 16 finished: reduce at ContaminationEstimator.scala:115, took 0.017292 s
19/03/14 09:26:38 INFO spark.SparkContext: Starting job: reduce at ContaminationEstimator.scala:115
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Got job 17 (reduce at ContaminationEstimator.scala:115) with 4 output partitions
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Final stage: ResultStage 52 (reduce at ContaminationEstimator.scala:115)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 51, ShuffleMapStage 50)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Missing parents: List()
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Submitting ResultStage 52 (MapPartitionsRDD[32] at map at ContaminationEstimator.scala:114), which has no missing parents
19/03/14 09:26:38 INFO storage.MemoryStore: Block broadcast_21 stored as values in memory (estimated size 4.4 KB, free 136.0 KB)
19/03/14 09:26:38 INFO storage.MemoryStore: Block broadcast_21_piece0 stored as bytes in memory (estimated size 2.3 KB, free 138.2 KB)
19/03/14 09:26:38 INFO storage.BlockManagerInfo: Added broadcast_21_piece0 in memory on localhost:42107 (size: 2.3 KB, free: 521.2 MB)
19/03/14 09:26:38 INFO spark.SparkContext: Created broadcast 21 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ResultStage 52 (MapPartitionsRDD[32] at map at ContaminationEstimator.scala:114)
19/03/14 09:26:38 INFO scheduler.TaskSchedulerImpl: Adding task set 52.0 with 4 tasks
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 52.0 (TID 80, localhost, partition 0,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 52.0 (TID 81, localhost, partition 1,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 52.0 (TID 82, localhost, partition 2,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 52.0 (TID 83, localhost, partition 3,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO executor.Executor: Running task 2.0 in stage 52.0 (TID 82)
19/03/14 09:26:38 INFO executor.Executor: Running task 3.0 in stage 52.0 (TID 83)
19/03/14 09:26:38 INFO executor.Executor: Running task 0.0 in stage 52.0 (TID 80)
19/03/14 09:26:38 INFO executor.Executor: Running task 1.0 in stage 52.0 (TID 81)
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_3 locally
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_2 locally
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_0 locally
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_1 locally
19/03/14 09:26:38 INFO executor.Executor: Finished task 3.0 in stage 52.0 (TID 83). 2058 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 2.0 in stage 52.0 (TID 82). 2066 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 1.0 in stage 52.0 (TID 81). 2058 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 0.0 in stage 52.0 (TID 80). 2058 bytes result sent to driver
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 52.0 (TID 83) in 4 ms on localhost (1/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 52.0 (TID 82) in 4 ms on localhost (2/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 52.0 (TID 81) in 5 ms on localhost (3/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 52.0 (TID 80) in 6 ms on localhost (4/4)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: ResultStage 52 (reduce at ContaminationEstimator.scala:115) finished in 0.006 s
19/03/14 09:26:38 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 52.0, whose tasks have all completed, from pool 
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Job 17 finished: reduce at ContaminationEstimator.scala:115, took 0.014458 s
19/03/14 09:26:38 INFO spark.SparkContext: Starting job: reduce at ContaminationEstimator.scala:115
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Got job 18 (reduce at ContaminationEstimator.scala:115) with 4 output partitions
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Final stage: ResultStage 55 (reduce at ContaminationEstimator.scala:115)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 53, ShuffleMapStage 54)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Missing parents: List()
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Submitting ResultStage 55 (MapPartitionsRDD[33] at map at ContaminationEstimator.scala:114), which has no missing parents
19/03/14 09:26:38 INFO storage.MemoryStore: Block broadcast_22 stored as values in memory (estimated size 4.4 KB, free 142.6 KB)
19/03/14 09:26:38 INFO storage.MemoryStore: Block broadcast_22_piece0 stored as bytes in memory (estimated size 2.3 KB, free 144.9 KB)
19/03/14 09:26:38 INFO storage.BlockManagerInfo: Added broadcast_22_piece0 in memory on localhost:42107 (size: 2.3 KB, free: 521.2 MB)
19/03/14 09:26:38 INFO spark.SparkContext: Created broadcast 22 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ResultStage 55 (MapPartitionsRDD[33] at map at ContaminationEstimator.scala:114)
19/03/14 09:26:38 INFO scheduler.TaskSchedulerImpl: Adding task set 55.0 with 4 tasks
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 55.0 (TID 84, localhost, partition 0,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 55.0 (TID 85, localhost, partition 1,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 55.0 (TID 86, localhost, partition 2,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 55.0 (TID 87, localhost, partition 3,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO executor.Executor: Running task 2.0 in stage 55.0 (TID 86)
19/03/14 09:26:38 INFO executor.Executor: Running task 3.0 in stage 55.0 (TID 87)
19/03/14 09:26:38 INFO executor.Executor: Running task 1.0 in stage 55.0 (TID 85)
19/03/14 09:26:38 INFO executor.Executor: Running task 0.0 in stage 55.0 (TID 84)
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_2 locally
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_3 locally
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_0 locally
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_1 locally
19/03/14 09:26:38 INFO executor.Executor: Finished task 3.0 in stage 55.0 (TID 87). 2058 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 2.0 in stage 55.0 (TID 86). 2066 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 0.0 in stage 55.0 (TID 84). 2058 bytes result sent to driver
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 55.0 (TID 87) in 8 ms on localhost (1/4)
19/03/14 09:26:38 INFO executor.Executor: Finished task 1.0 in stage 55.0 (TID 85). 2058 bytes result sent to driver
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 55.0 (TID 84) in 10 ms on localhost (2/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 55.0 (TID 86) in 9 ms on localhost (3/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 55.0 (TID 85) in 11 ms on localhost (4/4)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: ResultStage 55 (reduce at ContaminationEstimator.scala:115) finished in 0.012 s
19/03/14 09:26:38 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 55.0, whose tasks have all completed, from pool 
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Job 18 finished: reduce at ContaminationEstimator.scala:115, took 0.019486 s
19/03/14 09:26:38 INFO spark.SparkContext: Starting job: reduce at ContaminationEstimator.scala:115
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Got job 19 (reduce at ContaminationEstimator.scala:115) with 4 output partitions
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Final stage: ResultStage 58 (reduce at ContaminationEstimator.scala:115)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 56, ShuffleMapStage 57)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Missing parents: List()
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Submitting ResultStage 58 (MapPartitionsRDD[34] at map at ContaminationEstimator.scala:114), which has no missing parents
19/03/14 09:26:38 INFO storage.MemoryStore: Block broadcast_23 stored as values in memory (estimated size 4.4 KB, free 149.2 KB)
19/03/14 09:26:38 INFO storage.MemoryStore: Block broadcast_23_piece0 stored as bytes in memory (estimated size 2.3 KB, free 145.2 KB)
19/03/14 09:26:38 INFO storage.BlockManagerInfo: Removed broadcast_0_piece0 on localhost:42107 in memory (size: 2.2 KB, free: 521.2 MB)
19/03/14 09:26:38 INFO storage.BlockManagerInfo: Added broadcast_23_piece0 in memory on localhost:42107 (size: 2.3 KB, free: 521.2 MB)
19/03/14 09:26:38 INFO spark.SparkContext: Created broadcast 23 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ResultStage 58 (MapPartitionsRDD[34] at map at ContaminationEstimator.scala:114)
19/03/14 09:26:38 INFO scheduler.TaskSchedulerImpl: Adding task set 58.0 with 4 tasks
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 58.0 (TID 88, localhost, partition 0,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO spark.ContextCleaner: Cleaned accumulator 209
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 58.0 (TID 89, localhost, partition 1,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 58.0 (TID 90, localhost, partition 2,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO storage.BlockManagerInfo: Removed broadcast_1_piece0 on localhost:42107 in memory (size: 2.5 KB, free: 521.2 MB)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 58.0 (TID 91, localhost, partition 3,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO executor.Executor: Running task 1.0 in stage 58.0 (TID 89)
19/03/14 09:26:38 INFO executor.Executor: Running task 0.0 in stage 58.0 (TID 88)
19/03/14 09:26:38 INFO spark.ContextCleaner: Cleaned accumulator 208
19/03/14 09:26:38 INFO executor.Executor: Running task 3.0 in stage 58.0 (TID 91)
19/03/14 09:26:38 INFO executor.Executor: Running task 2.0 in stage 58.0 (TID 90)
19/03/14 09:26:38 INFO storage.BlockManagerInfo: Removed broadcast_4_piece0 on localhost:42107 in memory (size: 2.2 KB, free: 521.2 MB)
19/03/14 09:26:38 INFO spark.ContextCleaner: Cleaned accumulator 210
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_2 locally
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_3 locally
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_1 locally
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_0 locally
19/03/14 09:26:38 INFO storage.BlockManagerInfo: Removed broadcast_3_piece0 on localhost:42107 in memory (size: 2.1 KB, free: 521.2 MB)
19/03/14 09:26:38 INFO spark.ContextCleaner: Cleaned accumulator 222
19/03/14 09:26:38 INFO storage.BlockManagerInfo: Removed broadcast_15_piece0 on localhost:42107 in memory (size: 2.3 KB, free: 521.2 MB)
19/03/14 09:26:38 INFO spark.ContextCleaner: Cleaned accumulator 221
19/03/14 09:26:38 INFO executor.Executor: Finished task 0.0 in stage 58.0 (TID 88). 2058 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 1.0 in stage 58.0 (TID 89). 2058 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 2.0 in stage 58.0 (TID 90). 2066 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 3.0 in stage 58.0 (TID 91). 2058 bytes result sent to driver
19/03/14 09:26:38 INFO storage.BlockManagerInfo: Removed broadcast_14_piece0 on localhost:42107 in memory (size: 2.3 KB, free: 521.2 MB)
19/03/14 09:26:38 INFO spark.ContextCleaner: Cleaned accumulator 220
19/03/14 09:26:38 INFO storage.BlockManagerInfo: Removed broadcast_13_piece0 on localhost:42107 in memory (size: 2.3 KB, free: 521.2 MB)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 58.0 (TID 89) in 5 ms on localhost (1/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 58.0 (TID 88) in 5 ms on localhost (2/4)
19/03/14 09:26:38 INFO spark.ContextCleaner: Cleaned accumulator 219
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 58.0 (TID 90) in 6 ms on localhost (3/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 58.0 (TID 91) in 5 ms on localhost (4/4)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: ResultStage 58 (reduce at ContaminationEstimator.scala:115) finished in 0.006 s
19/03/14 09:26:38 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 58.0, whose tasks have all completed, from pool 
19/03/14 09:26:38 INFO storage.BlockManagerInfo: Removed broadcast_12_piece0 on localhost:42107 in memory (size: 2.3 KB, free: 521.2 MB)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Job 19 finished: reduce at ContaminationEstimator.scala:115, took 0.025778 s
19/03/14 09:26:38 INFO spark.ContextCleaner: Cleaned accumulator 218
19/03/14 09:26:38 INFO storage.BlockManagerInfo: Removed broadcast_11_piece0 on localhost:42107 in memory (size: 2.3 KB, free: 521.2 MB)
19/03/14 09:26:38 INFO spark.ContextCleaner: Cleaned accumulator 217
19/03/14 09:26:38 INFO storage.BlockManagerInfo: Removed broadcast_10_piece0 on localhost:42107 in memory (size: 2.3 KB, free: 521.2 MB)
19/03/14 09:26:38 INFO spark.ContextCleaner: Cleaned accumulator 216
19/03/14 09:26:38 INFO storage.BlockManagerInfo: Removed broadcast_9_piece0 on localhost:42107 in memory (size: 2.3 KB, free: 521.2 MB)
19/03/14 09:26:38 INFO spark.ContextCleaner: Cleaned accumulator 215
19/03/14 09:26:38 INFO storage.BlockManagerInfo: Removed broadcast_8_piece0 on localhost:42107 in memory (size: 2.3 KB, free: 521.2 MB)
19/03/14 09:26:38 INFO spark.ContextCleaner: Cleaned accumulator 214
19/03/14 09:26:38 INFO storage.BlockManagerInfo: Removed broadcast_7_piece0 on localhost:42107 in memory (size: 2.3 KB, free: 521.2 MB)
19/03/14 09:26:38 INFO spark.ContextCleaner: Cleaned accumulator 213
19/03/14 09:26:38 INFO storage.BlockManagerInfo: Removed broadcast_6_piece0 on localhost:42107 in memory (size: 2.3 KB, free: 521.2 MB)
19/03/14 09:26:38 INFO spark.ContextCleaner: Cleaned accumulator 212
19/03/14 09:26:38 INFO storage.BlockManagerInfo: Removed broadcast_5_piece0 on localhost:42107 in memory (size: 2.1 KB, free: 521.2 MB)
19/03/14 09:26:38 INFO spark.SparkContext: Starting job: reduce at ContaminationEstimator.scala:115
19/03/14 09:26:38 INFO spark.ContextCleaner: Cleaned accumulator 211
19/03/14 09:26:38 INFO storage.BlockManagerInfo: Removed broadcast_22_piece0 on localhost:42107 in memory (size: 2.3 KB, free: 521.2 MB)
19/03/14 09:26:38 INFO spark.ContextCleaner: Cleaned accumulator 228
19/03/14 09:26:38 INFO storage.BlockManagerInfo: Removed broadcast_21_piece0 on localhost:42107 in memory (size: 2.3 KB, free: 521.2 MB)
19/03/14 09:26:38 INFO spark.ContextCleaner: Cleaned accumulator 227
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Got job 20 (reduce at ContaminationEstimator.scala:115) with 4 output partitions
19/03/14 09:26:38 INFO storage.BlockManagerInfo: Removed broadcast_20_piece0 on localhost:42107 in memory (size: 2.3 KB, free: 521.2 MB)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Final stage: ResultStage 61 (reduce at ContaminationEstimator.scala:115)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 60, ShuffleMapStage 59)
19/03/14 09:26:38 INFO spark.ContextCleaner: Cleaned accumulator 226
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Missing parents: List()
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Submitting ResultStage 61 (MapPartitionsRDD[35] at map at ContaminationEstimator.scala:114), which has no missing parents
19/03/14 09:26:38 INFO storage.BlockManagerInfo: Removed broadcast_19_piece0 on localhost:42107 in memory (size: 2.3 KB, free: 521.2 MB)
19/03/14 09:26:38 INFO spark.ContextCleaner: Cleaned accumulator 225
19/03/14 09:26:38 INFO storage.BlockManagerInfo: Removed broadcast_18_piece0 on localhost:42107 in memory (size: 2.3 KB, free: 521.2 MB)
19/03/14 09:26:38 INFO spark.ContextCleaner: Cleaned accumulator 224
19/03/14 09:26:38 INFO storage.MemoryStore: Block broadcast_24 stored as values in memory (estimated size 4.4 KB, free 25.2 KB)
19/03/14 09:26:38 INFO storage.BlockManagerInfo: Removed broadcast_17_piece0 on localhost:42107 in memory (size: 2.3 KB, free: 521.2 MB)
19/03/14 09:26:38 INFO spark.ContextCleaner: Cleaned accumulator 223
19/03/14 09:26:38 INFO storage.BlockManagerInfo: Removed broadcast_16_piece0 on localhost:42107 in memory (size: 2.3 KB, free: 521.2 MB)
19/03/14 09:26:38 INFO spark.ContextCleaner: Cleaned shuffle 0
19/03/14 09:26:38 INFO spark.ContextCleaner: Cleaned accumulator 207
19/03/14 09:26:38 INFO storage.MemoryStore: Block broadcast_24_piece0 stored as bytes in memory (estimated size 2.3 KB, free 14.2 KB)
19/03/14 09:26:38 INFO storage.BlockManagerInfo: Added broadcast_24_piece0 in memory on localhost:42107 (size: 2.3 KB, free: 521.2 MB)
19/03/14 09:26:38 INFO spark.SparkContext: Created broadcast 24 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ResultStage 61 (MapPartitionsRDD[35] at map at ContaminationEstimator.scala:114)
19/03/14 09:26:38 INFO scheduler.TaskSchedulerImpl: Adding task set 61.0 with 4 tasks
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 61.0 (TID 92, localhost, partition 0,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 61.0 (TID 93, localhost, partition 1,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 61.0 (TID 94, localhost, partition 2,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 61.0 (TID 95, localhost, partition 3,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO executor.Executor: Running task 0.0 in stage 61.0 (TID 92)
19/03/14 09:26:38 INFO executor.Executor: Running task 3.0 in stage 61.0 (TID 95)
19/03/14 09:26:38 INFO executor.Executor: Running task 1.0 in stage 61.0 (TID 93)
19/03/14 09:26:38 INFO executor.Executor: Running task 2.0 in stage 61.0 (TID 94)
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_1 locally
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_0 locally
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_2 locally
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_3 locally
19/03/14 09:26:38 INFO executor.Executor: Finished task 0.0 in stage 61.0 (TID 92). 2058 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 1.0 in stage 61.0 (TID 93). 2058 bytes result sent to driver
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 61.0 (TID 92) in 5 ms on localhost (1/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 61.0 (TID 93) in 4 ms on localhost (2/4)
19/03/14 09:26:38 INFO executor.Executor: Finished task 3.0 in stage 61.0 (TID 95). 2058 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 2.0 in stage 61.0 (TID 94). 2066 bytes result sent to driver
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 61.0 (TID 94) in 6 ms on localhost (3/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 61.0 (TID 95) in 6 ms on localhost (4/4)
19/03/14 09:26:38 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 61.0, whose tasks have all completed, from pool 
19/03/14 09:26:38 INFO scheduler.DAGScheduler: ResultStage 61 (reduce at ContaminationEstimator.scala:115) finished in 0.007 s
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Job 20 finished: reduce at ContaminationEstimator.scala:115, took 0.013737 s
19/03/14 09:26:38 INFO spark.SparkContext: Starting job: reduce at ContaminationEstimator.scala:115
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Got job 21 (reduce at ContaminationEstimator.scala:115) with 4 output partitions
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Final stage: ResultStage 64 (reduce at ContaminationEstimator.scala:115)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 63, ShuffleMapStage 62)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Missing parents: List()
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Submitting ResultStage 64 (MapPartitionsRDD[36] at map at ContaminationEstimator.scala:114), which has no missing parents
19/03/14 09:26:38 INFO storage.MemoryStore: Block broadcast_25 stored as values in memory (estimated size 4.4 KB, free 18.6 KB)
19/03/14 09:26:38 INFO storage.MemoryStore: Block broadcast_25_piece0 stored as bytes in memory (estimated size 2.3 KB, free 20.9 KB)
19/03/14 09:26:38 INFO storage.BlockManagerInfo: Added broadcast_25_piece0 in memory on localhost:42107 (size: 2.3 KB, free: 521.2 MB)
19/03/14 09:26:38 INFO spark.SparkContext: Created broadcast 25 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ResultStage 64 (MapPartitionsRDD[36] at map at ContaminationEstimator.scala:114)
19/03/14 09:26:38 INFO scheduler.TaskSchedulerImpl: Adding task set 64.0 with 4 tasks
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 64.0 (TID 96, localhost, partition 0,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 64.0 (TID 97, localhost, partition 1,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 64.0 (TID 98, localhost, partition 2,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 64.0 (TID 99, localhost, partition 3,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO executor.Executor: Running task 1.0 in stage 64.0 (TID 97)
19/03/14 09:26:38 INFO executor.Executor: Running task 0.0 in stage 64.0 (TID 96)
19/03/14 09:26:38 INFO executor.Executor: Running task 2.0 in stage 64.0 (TID 98)
19/03/14 09:26:38 INFO executor.Executor: Running task 3.0 in stage 64.0 (TID 99)
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_1 locally
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_0 locally
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_2 locally
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_3 locally
19/03/14 09:26:38 INFO executor.Executor: Finished task 1.0 in stage 64.0 (TID 97). 2058 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 0.0 in stage 64.0 (TID 96). 2058 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 3.0 in stage 64.0 (TID 99). 2058 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 2.0 in stage 64.0 (TID 98). 2066 bytes result sent to driver
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 64.0 (TID 96) in 6 ms on localhost (1/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 64.0 (TID 97) in 6 ms on localhost (2/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 64.0 (TID 98) in 6 ms on localhost (3/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 64.0 (TID 99) in 7 ms on localhost (4/4)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: ResultStage 64 (reduce at ContaminationEstimator.scala:115) finished in 0.008 s
19/03/14 09:26:38 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 64.0, whose tasks have all completed, from pool 
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Job 21 finished: reduce at ContaminationEstimator.scala:115, took 0.015156 s
19/03/14 09:26:38 INFO spark.SparkContext: Starting job: reduce at ContaminationEstimator.scala:115
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Got job 22 (reduce at ContaminationEstimator.scala:115) with 4 output partitions
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Final stage: ResultStage 67 (reduce at ContaminationEstimator.scala:115)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 66, ShuffleMapStage 65)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Missing parents: List()
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Submitting ResultStage 67 (MapPartitionsRDD[37] at map at ContaminationEstimator.scala:114), which has no missing parents
19/03/14 09:26:38 INFO storage.MemoryStore: Block broadcast_26 stored as values in memory (estimated size 4.4 KB, free 25.2 KB)
19/03/14 09:26:38 INFO storage.MemoryStore: Block broadcast_26_piece0 stored as bytes in memory (estimated size 2.3 KB, free 27.5 KB)
19/03/14 09:26:38 INFO storage.BlockManagerInfo: Added broadcast_26_piece0 in memory on localhost:42107 (size: 2.3 KB, free: 521.2 MB)
19/03/14 09:26:38 INFO spark.SparkContext: Created broadcast 26 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ResultStage 67 (MapPartitionsRDD[37] at map at ContaminationEstimator.scala:114)
19/03/14 09:26:38 INFO scheduler.TaskSchedulerImpl: Adding task set 67.0 with 4 tasks
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 67.0 (TID 100, localhost, partition 0,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 67.0 (TID 101, localhost, partition 1,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 67.0 (TID 102, localhost, partition 2,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 67.0 (TID 103, localhost, partition 3,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO executor.Executor: Running task 0.0 in stage 67.0 (TID 100)
19/03/14 09:26:38 INFO executor.Executor: Running task 1.0 in stage 67.0 (TID 101)
19/03/14 09:26:38 INFO executor.Executor: Running task 3.0 in stage 67.0 (TID 103)
19/03/14 09:26:38 INFO executor.Executor: Running task 2.0 in stage 67.0 (TID 102)
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_1 locally
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_0 locally
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_2 locally
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_3 locally
19/03/14 09:26:38 INFO executor.Executor: Finished task 1.0 in stage 67.0 (TID 101). 2058 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 0.0 in stage 67.0 (TID 100). 2058 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 3.0 in stage 67.0 (TID 103). 2058 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 2.0 in stage 67.0 (TID 102). 2066 bytes result sent to driver
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 67.0 (TID 103) in 4 ms on localhost (1/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 67.0 (TID 101) in 5 ms on localhost (2/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 67.0 (TID 100) in 6 ms on localhost (3/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 67.0 (TID 102) in 5 ms on localhost (4/4)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: ResultStage 67 (reduce at ContaminationEstimator.scala:115) finished in 0.006 s
19/03/14 09:26:38 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 67.0, whose tasks have all completed, from pool 
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Job 22 finished: reduce at ContaminationEstimator.scala:115, took 0.012602 s
19/03/14 09:26:38 INFO spark.SparkContext: Starting job: reduce at ContaminationEstimator.scala:115
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Got job 23 (reduce at ContaminationEstimator.scala:115) with 4 output partitions
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Final stage: ResultStage 70 (reduce at ContaminationEstimator.scala:115)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 68, ShuffleMapStage 69)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Missing parents: List()
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Submitting ResultStage 70 (MapPartitionsRDD[38] at map at ContaminationEstimator.scala:114), which has no missing parents
19/03/14 09:26:38 INFO storage.MemoryStore: Block broadcast_27 stored as values in memory (estimated size 4.4 KB, free 31.8 KB)
19/03/14 09:26:38 INFO storage.MemoryStore: Block broadcast_27_piece0 stored as bytes in memory (estimated size 2.3 KB, free 34.1 KB)
19/03/14 09:26:38 INFO storage.BlockManagerInfo: Added broadcast_27_piece0 in memory on localhost:42107 (size: 2.3 KB, free: 521.2 MB)
19/03/14 09:26:38 INFO spark.SparkContext: Created broadcast 27 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ResultStage 70 (MapPartitionsRDD[38] at map at ContaminationEstimator.scala:114)
19/03/14 09:26:38 INFO scheduler.TaskSchedulerImpl: Adding task set 70.0 with 4 tasks
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 70.0 (TID 104, localhost, partition 0,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 70.0 (TID 105, localhost, partition 1,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 70.0 (TID 106, localhost, partition 2,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 70.0 (TID 107, localhost, partition 3,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO executor.Executor: Running task 1.0 in stage 70.0 (TID 105)
19/03/14 09:26:38 INFO executor.Executor: Running task 0.0 in stage 70.0 (TID 104)
19/03/14 09:26:38 INFO executor.Executor: Running task 2.0 in stage 70.0 (TID 106)
19/03/14 09:26:38 INFO executor.Executor: Running task 3.0 in stage 70.0 (TID 107)
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_3 locally
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_1 locally
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_0 locally
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_2 locally
19/03/14 09:26:38 INFO executor.Executor: Finished task 3.0 in stage 70.0 (TID 107). 2058 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 2.0 in stage 70.0 (TID 106). 2066 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 0.0 in stage 70.0 (TID 104). 2058 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 1.0 in stage 70.0 (TID 105). 2058 bytes result sent to driver
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 70.0 (TID 107) in 4 ms on localhost (1/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 70.0 (TID 106) in 5 ms on localhost (2/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 70.0 (TID 105) in 6 ms on localhost (3/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 70.0 (TID 104) in 6 ms on localhost (4/4)
19/03/14 09:26:38 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 70.0, whose tasks have all completed, from pool 
19/03/14 09:26:38 INFO scheduler.DAGScheduler: ResultStage 70 (reduce at ContaminationEstimator.scala:115) finished in 0.006 s
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Job 23 finished: reduce at ContaminationEstimator.scala:115, took 0.018373 s
19/03/14 09:26:38 INFO spark.SparkContext: Starting job: reduce at ContaminationEstimator.scala:115
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Got job 24 (reduce at ContaminationEstimator.scala:115) with 4 output partitions
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Final stage: ResultStage 73 (reduce at ContaminationEstimator.scala:115)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 71, ShuffleMapStage 72)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Missing parents: List()
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Submitting ResultStage 73 (MapPartitionsRDD[39] at map at ContaminationEstimator.scala:114), which has no missing parents
19/03/14 09:26:38 INFO storage.MemoryStore: Block broadcast_28 stored as values in memory (estimated size 4.4 KB, free 38.5 KB)
19/03/14 09:26:38 INFO storage.MemoryStore: Block broadcast_28_piece0 stored as bytes in memory (estimated size 2.3 KB, free 40.7 KB)
19/03/14 09:26:38 INFO storage.BlockManagerInfo: Added broadcast_28_piece0 in memory on localhost:42107 (size: 2.3 KB, free: 521.2 MB)
19/03/14 09:26:38 INFO spark.SparkContext: Created broadcast 28 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ResultStage 73 (MapPartitionsRDD[39] at map at ContaminationEstimator.scala:114)
19/03/14 09:26:38 INFO scheduler.TaskSchedulerImpl: Adding task set 73.0 with 4 tasks
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 73.0 (TID 108, localhost, partition 0,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 73.0 (TID 109, localhost, partition 1,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 73.0 (TID 110, localhost, partition 2,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 73.0 (TID 111, localhost, partition 3,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO executor.Executor: Running task 0.0 in stage 73.0 (TID 108)
19/03/14 09:26:38 INFO executor.Executor: Running task 3.0 in stage 73.0 (TID 111)
19/03/14 09:26:38 INFO executor.Executor: Running task 2.0 in stage 73.0 (TID 110)
19/03/14 09:26:38 INFO executor.Executor: Running task 1.0 in stage 73.0 (TID 109)
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_0 locally
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_1 locally
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_3 locally
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_2 locally
19/03/14 09:26:38 INFO executor.Executor: Finished task 1.0 in stage 73.0 (TID 109). 2058 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 0.0 in stage 73.0 (TID 108). 2058 bytes result sent to driver
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 73.0 (TID 109) in 4 ms on localhost (1/4)
19/03/14 09:26:38 INFO executor.Executor: Finished task 3.0 in stage 73.0 (TID 111). 2058 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 2.0 in stage 73.0 (TID 110). 2066 bytes result sent to driver
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 73.0 (TID 108) in 7 ms on localhost (2/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 73.0 (TID 111) in 7 ms on localhost (3/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 73.0 (TID 110) in 7 ms on localhost (4/4)
19/03/14 09:26:38 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 73.0, whose tasks have all completed, from pool 
19/03/14 09:26:38 INFO scheduler.DAGScheduler: ResultStage 73 (reduce at ContaminationEstimator.scala:115) finished in 0.008 s
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Job 24 finished: reduce at ContaminationEstimator.scala:115, took 0.014525 s
19/03/14 09:26:38 INFO spark.SparkContext: Starting job: reduce at ContaminationEstimator.scala:115
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Got job 25 (reduce at ContaminationEstimator.scala:115) with 4 output partitions
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Final stage: ResultStage 76 (reduce at ContaminationEstimator.scala:115)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 74, ShuffleMapStage 75)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Missing parents: List()
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Submitting ResultStage 76 (MapPartitionsRDD[40] at map at ContaminationEstimator.scala:114), which has no missing parents
19/03/14 09:26:38 INFO storage.MemoryStore: Block broadcast_29 stored as values in memory (estimated size 4.4 KB, free 45.1 KB)
19/03/14 09:26:38 INFO storage.MemoryStore: Block broadcast_29_piece0 stored as bytes in memory (estimated size 2.3 KB, free 47.3 KB)
19/03/14 09:26:38 INFO storage.BlockManagerInfo: Added broadcast_29_piece0 in memory on localhost:42107 (size: 2.3 KB, free: 521.2 MB)
19/03/14 09:26:38 INFO spark.SparkContext: Created broadcast 29 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ResultStage 76 (MapPartitionsRDD[40] at map at ContaminationEstimator.scala:114)
19/03/14 09:26:38 INFO scheduler.TaskSchedulerImpl: Adding task set 76.0 with 4 tasks
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 76.0 (TID 112, localhost, partition 0,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 76.0 (TID 113, localhost, partition 1,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 76.0 (TID 114, localhost, partition 2,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 76.0 (TID 115, localhost, partition 3,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO executor.Executor: Running task 1.0 in stage 76.0 (TID 113)
19/03/14 09:26:38 INFO executor.Executor: Running task 0.0 in stage 76.0 (TID 112)
19/03/14 09:26:38 INFO executor.Executor: Running task 2.0 in stage 76.0 (TID 114)
19/03/14 09:26:38 INFO executor.Executor: Running task 3.0 in stage 76.0 (TID 115)
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_1 locally
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_0 locally
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_2 locally
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_3 locally
19/03/14 09:26:38 INFO executor.Executor: Finished task 0.0 in stage 76.0 (TID 112). 2058 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 1.0 in stage 76.0 (TID 113). 2058 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 2.0 in stage 76.0 (TID 114). 2066 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 3.0 in stage 76.0 (TID 115). 2058 bytes result sent to driver
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 76.0 (TID 112) in 4 ms on localhost (1/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 76.0 (TID 114) in 5 ms on localhost (2/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 76.0 (TID 113) in 5 ms on localhost (3/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 76.0 (TID 115) in 5 ms on localhost (4/4)
19/03/14 09:26:38 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 76.0, whose tasks have all completed, from pool 
19/03/14 09:26:38 INFO scheduler.DAGScheduler: ResultStage 76 (reduce at ContaminationEstimator.scala:115) finished in 0.006 s
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Job 25 finished: reduce at ContaminationEstimator.scala:115, took 0.014318 s
19/03/14 09:26:38 INFO spark.SparkContext: Starting job: reduce at ContaminationEstimator.scala:115
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Got job 26 (reduce at ContaminationEstimator.scala:115) with 4 output partitions
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Final stage: ResultStage 79 (reduce at ContaminationEstimator.scala:115)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 78, ShuffleMapStage 77)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Missing parents: List()
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Submitting ResultStage 79 (MapPartitionsRDD[41] at map at ContaminationEstimator.scala:114), which has no missing parents
19/03/14 09:26:38 INFO storage.MemoryStore: Block broadcast_30 stored as values in memory (estimated size 4.4 KB, free 51.7 KB)
19/03/14 09:26:38 INFO storage.MemoryStore: Block broadcast_30_piece0 stored as bytes in memory (estimated size 2.3 KB, free 54.0 KB)
19/03/14 09:26:38 INFO storage.BlockManagerInfo: Added broadcast_30_piece0 in memory on localhost:42107 (size: 2.3 KB, free: 521.2 MB)
19/03/14 09:26:38 INFO spark.SparkContext: Created broadcast 30 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ResultStage 79 (MapPartitionsRDD[41] at map at ContaminationEstimator.scala:114)
19/03/14 09:26:38 INFO scheduler.TaskSchedulerImpl: Adding task set 79.0 with 4 tasks
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 79.0 (TID 116, localhost, partition 0,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 79.0 (TID 117, localhost, partition 1,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 79.0 (TID 118, localhost, partition 2,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 79.0 (TID 119, localhost, partition 3,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO executor.Executor: Running task 1.0 in stage 79.0 (TID 117)
19/03/14 09:26:38 INFO executor.Executor: Running task 0.0 in stage 79.0 (TID 116)
19/03/14 09:26:38 INFO executor.Executor: Running task 3.0 in stage 79.0 (TID 119)
19/03/14 09:26:38 INFO executor.Executor: Running task 2.0 in stage 79.0 (TID 118)
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_1 locally
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_2 locally
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_3 locally
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_0 locally
19/03/14 09:26:38 INFO executor.Executor: Finished task 0.0 in stage 79.0 (TID 116). 2058 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 1.0 in stage 79.0 (TID 117). 2058 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 2.0 in stage 79.0 (TID 118). 2066 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 3.0 in stage 79.0 (TID 119). 2058 bytes result sent to driver
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 79.0 (TID 116) in 6 ms on localhost (1/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 79.0 (TID 117) in 6 ms on localhost (2/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 79.0 (TID 118) in 5 ms on localhost (3/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 79.0 (TID 119) in 6 ms on localhost (4/4)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: ResultStage 79 (reduce at ContaminationEstimator.scala:115) finished in 0.008 s
19/03/14 09:26:38 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 79.0, whose tasks have all completed, from pool 
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Job 26 finished: reduce at ContaminationEstimator.scala:115, took 0.012725 s
19/03/14 09:26:38 INFO spark.SparkContext: Starting job: reduce at ContaminationEstimator.scala:115
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Got job 27 (reduce at ContaminationEstimator.scala:115) with 4 output partitions
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Final stage: ResultStage 82 (reduce at ContaminationEstimator.scala:115)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 81, ShuffleMapStage 80)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Missing parents: List()
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Submitting ResultStage 82 (MapPartitionsRDD[42] at map at ContaminationEstimator.scala:114), which has no missing parents
19/03/14 09:26:38 INFO storage.MemoryStore: Block broadcast_31 stored as values in memory (estimated size 4.4 KB, free 58.3 KB)
19/03/14 09:26:38 INFO storage.MemoryStore: Block broadcast_31_piece0 stored as bytes in memory (estimated size 2.3 KB, free 60.6 KB)
19/03/14 09:26:38 INFO storage.BlockManagerInfo: Added broadcast_31_piece0 in memory on localhost:42107 (size: 2.3 KB, free: 521.2 MB)
19/03/14 09:26:38 INFO spark.SparkContext: Created broadcast 31 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ResultStage 82 (MapPartitionsRDD[42] at map at ContaminationEstimator.scala:114)
19/03/14 09:26:38 INFO scheduler.TaskSchedulerImpl: Adding task set 82.0 with 4 tasks
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 82.0 (TID 120, localhost, partition 0,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 82.0 (TID 121, localhost, partition 1,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 82.0 (TID 122, localhost, partition 2,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 82.0 (TID 123, localhost, partition 3,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO executor.Executor: Running task 0.0 in stage 82.0 (TID 120)
19/03/14 09:26:38 INFO executor.Executor: Running task 1.0 in stage 82.0 (TID 121)
19/03/14 09:26:38 INFO executor.Executor: Running task 2.0 in stage 82.0 (TID 122)
19/03/14 09:26:38 INFO executor.Executor: Running task 3.0 in stage 82.0 (TID 123)
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_0 locally
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_2 locally
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_3 locally
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_1 locally
19/03/14 09:26:38 INFO executor.Executor: Finished task 3.0 in stage 82.0 (TID 123). 2058 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 2.0 in stage 82.0 (TID 122). 2066 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 0.0 in stage 82.0 (TID 120). 2058 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 1.0 in stage 82.0 (TID 121). 2058 bytes result sent to driver
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 82.0 (TID 123) in 5 ms on localhost (1/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 82.0 (TID 122) in 5 ms on localhost (2/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 82.0 (TID 120) in 5 ms on localhost (3/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 82.0 (TID 121) in 6 ms on localhost (4/4)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: ResultStage 82 (reduce at ContaminationEstimator.scala:115) finished in 0.007 s
19/03/14 09:26:38 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 82.0, whose tasks have all completed, from pool 
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Job 27 finished: reduce at ContaminationEstimator.scala:115, took 0.015616 s
19/03/14 09:26:38 INFO spark.SparkContext: Starting job: reduce at ContaminationEstimator.scala:115
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Got job 28 (reduce at ContaminationEstimator.scala:115) with 4 output partitions
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Final stage: ResultStage 85 (reduce at ContaminationEstimator.scala:115)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 84, ShuffleMapStage 83)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Missing parents: List()
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Submitting ResultStage 85 (MapPartitionsRDD[43] at map at ContaminationEstimator.scala:114), which has no missing parents
19/03/14 09:26:38 INFO storage.MemoryStore: Block broadcast_32 stored as values in memory (estimated size 4.4 KB, free 64.9 KB)
19/03/14 09:26:38 INFO storage.MemoryStore: Block broadcast_32_piece0 stored as bytes in memory (estimated size 2.3 KB, free 67.2 KB)
19/03/14 09:26:38 INFO storage.BlockManagerInfo: Added broadcast_32_piece0 in memory on localhost:42107 (size: 2.3 KB, free: 521.2 MB)
19/03/14 09:26:38 INFO spark.SparkContext: Created broadcast 32 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ResultStage 85 (MapPartitionsRDD[43] at map at ContaminationEstimator.scala:114)
19/03/14 09:26:38 INFO scheduler.TaskSchedulerImpl: Adding task set 85.0 with 4 tasks
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 85.0 (TID 124, localhost, partition 0,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 85.0 (TID 125, localhost, partition 1,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 85.0 (TID 126, localhost, partition 2,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 85.0 (TID 127, localhost, partition 3,PROCESS_LOCAL, 1967 bytes)
19/03/14 09:26:38 INFO executor.Executor: Running task 1.0 in stage 85.0 (TID 125)
19/03/14 09:26:38 INFO executor.Executor: Running task 2.0 in stage 85.0 (TID 126)
19/03/14 09:26:38 INFO executor.Executor: Running task 0.0 in stage 85.0 (TID 124)
19/03/14 09:26:38 INFO executor.Executor: Running task 3.0 in stage 85.0 (TID 127)
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_1 locally
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_0 locally
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_3 locally
19/03/14 09:26:38 INFO storage.BlockManager: Found block rdd_16_2 locally
19/03/14 09:26:38 INFO executor.Executor: Finished task 1.0 in stage 85.0 (TID 125). 2058 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 0.0 in stage 85.0 (TID 124). 2058 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 2.0 in stage 85.0 (TID 126). 2066 bytes result sent to driver
19/03/14 09:26:38 INFO executor.Executor: Finished task 3.0 in stage 85.0 (TID 127). 2058 bytes result sent to driver
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 85.0 (TID 125) in 5 ms on localhost (1/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 85.0 (TID 124) in 6 ms on localhost (2/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 85.0 (TID 127) in 5 ms on localhost (3/4)
19/03/14 09:26:38 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 85.0 (TID 126) in 5 ms on localhost (4/4)
19/03/14 09:26:38 INFO scheduler.DAGScheduler: ResultStage 85 (reduce at ContaminationEstimator.scala:115) finished in 0.006 s
19/03/14 09:26:38 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 85.0, whose tasks have all completed, from pool 
19/03/14 09:26:38 INFO scheduler.DAGScheduler: Job 28 finished: reduce at ContaminationEstimator.scala:115, took 0.013811 s
19/03/14 09:26:38 INFO spark.MapOutputTrackerMasterEndpoint: MapOutputTrackerMasterEndpoint stopped!
19/03/14 09:26:38 INFO storage.MemoryStore: MemoryStore cleared
19/03/14 09:26:38 INFO storage.BlockManager: BlockManager stopped
19/03/14 09:26:38 INFO storage.BlockManagerMaster: BlockManagerMaster stopped
19/03/14 09:26:38 INFO scheduler.OutputCommitCoordinator$OutputCommitCoordinatorEndpoint: OutputCommitCoordinator stopped!
19/03/14 09:26:38 INFO remote.RemoteActorRefProvider$RemotingTerminator: Shutting down remote daemon.
19/03/14 09:26:38 INFO remote.RemoteActorRefProvider$RemotingTerminator: Remote daemon shut down; proceeding with flushing remote transports.
19/03/14 09:26:38 INFO spark.SparkContext: Successfully stopped SparkContext
- estimate contamination from a read dataset with 10% contamination reads
19/03/14 09:26:38 INFO spark.SparkContext: Running Spark version 1.6.1
19/03/14 09:26:38 INFO remote.RemoteActorRefProvider$RemotingTerminator: Remoting shut down.
19/03/14 09:26:38 INFO spark.SecurityManager: Changing view acls to: jenkins
19/03/14 09:26:38 INFO spark.SecurityManager: Changing modify acls to: jenkins
19/03/14 09:26:38 INFO spark.SecurityManager: SecurityManager: authentication disabled; ui acls disabled; users with view permissions: Set(jenkins); users with modify permissions: Set(jenkins)
19/03/14 09:26:38 INFO util.Utils: Successfully started service 'sparkDriver' on port 58252.
19/03/14 09:26:38 INFO slf4j.Slf4jLogger: Slf4jLogger started
19/03/14 09:26:38 INFO Remoting: Starting remoting
19/03/14 09:26:38 INFO Remoting: Remoting started; listening on addresses :[akka.tcp://sparkDriverActorSystem@localhost:58253]
19/03/14 09:26:38 INFO util.Utils: Successfully started service 'sparkDriverActorSystem' on port 58253.
19/03/14 09:26:38 INFO spark.SparkEnv: Registering MapOutputTracker
19/03/14 09:26:38 INFO spark.SparkEnv: Registering BlockManagerMaster
19/03/14 09:26:38 INFO storage.DiskBlockManager: Created local directory at /tmp/blockmgr-acd7d31c-0ca9-42cd-a496-7bf6d00590a4
19/03/14 09:26:38 INFO storage.MemoryStore: MemoryStore started with capacity 521.6 MB
19/03/14 09:26:38 INFO spark.SparkEnv: Registering OutputCommitCoordinator
19/03/14 09:26:39 INFO executor.Executor: Starting executor ID driver on host localhost
19/03/14 09:26:39 INFO util.Utils: Successfully started service 'org.apache.spark.network.netty.NettyBlockTransferService' on port 39348.
19/03/14 09:26:39 INFO netty.NettyBlockTransferService: Server created on 39348
19/03/14 09:26:39 INFO storage.BlockManagerMaster: Trying to register BlockManager
19/03/14 09:26:39 INFO storage.BlockManagerMasterEndpoint: Registering block manager localhost:39348 with 521.6 MB RAM, BlockManagerId(driver, localhost, 39348)
19/03/14 09:26:39 INFO storage.BlockManagerMaster: Registered BlockManager
19/03/14 09:26:39 INFO spark.SparkContext: Starting job: collect at BroadcastRegionJoin.scala:100
19/03/14 09:26:39 INFO scheduler.DAGScheduler: Registering RDD 6 (keyBy at BroadcastRegionJoin.scala:98)
19/03/14 09:26:39 INFO scheduler.DAGScheduler: Got job 0 (collect at BroadcastRegionJoin.scala:100) with 4 output partitions
19/03/14 09:26:39 INFO scheduler.DAGScheduler: Final stage: ResultStage 1 (collect at BroadcastRegionJoin.scala:100)
19/03/14 09:26:39 INFO scheduler.DAGScheduler: Parents of final stage: List(ShuffleMapStage 0)
19/03/14 09:26:39 INFO scheduler.DAGScheduler: Missing parents: List(ShuffleMapStage 0)
19/03/14 09:26:39 INFO scheduler.DAGScheduler: Submitting ShuffleMapStage 0 (MapPartitionsRDD[6] at keyBy at BroadcastRegionJoin.scala:98), which has no missing parents
19/03/14 09:26:39 INFO storage.MemoryStore: Block broadcast_0 stored as values in memory (estimated size 4.1 KB, free 4.1 KB)
19/03/14 09:26:39 INFO storage.MemoryStore: Block broadcast_0_piece0 stored as bytes in memory (estimated size 2.2 KB, free 6.3 KB)
19/03/14 09:26:39 INFO storage.BlockManagerInfo: Added broadcast_0_piece0 in memory on localhost:39348 (size: 2.2 KB, free: 521.6 MB)
19/03/14 09:26:39 INFO spark.SparkContext: Created broadcast 0 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:39 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ShuffleMapStage 0 (MapPartitionsRDD[6] at keyBy at BroadcastRegionJoin.scala:98)
19/03/14 09:26:39 INFO scheduler.TaskSchedulerImpl: Adding task set 0.0 with 4 tasks
19/03/14 09:26:39 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 0.0 (TID 0, localhost, partition 0,PROCESS_LOCAL, 2082 bytes)
19/03/14 09:26:39 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 0.0 (TID 1, localhost, partition 1,PROCESS_LOCAL, 2082 bytes)
19/03/14 09:26:39 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 0.0 (TID 2, localhost, partition 2,PROCESS_LOCAL, 2082 bytes)
19/03/14 09:26:39 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 0.0 (TID 3, localhost, partition 3,PROCESS_LOCAL, 2128 bytes)
19/03/14 09:26:39 INFO executor.Executor: Running task 0.0 in stage 0.0 (TID 0)
19/03/14 09:26:39 INFO executor.Executor: Running task 1.0 in stage 0.0 (TID 1)
19/03/14 09:26:39 INFO executor.Executor: Running task 2.0 in stage 0.0 (TID 2)
19/03/14 09:26:39 INFO executor.Executor: Running task 3.0 in stage 0.0 (TID 3)
19/03/14 09:26:39 INFO executor.Executor: Finished task 2.0 in stage 0.0 (TID 2). 1090 bytes result sent to driver
19/03/14 09:26:39 INFO executor.Executor: Finished task 0.0 in stage 0.0 (TID 0). 1090 bytes result sent to driver
19/03/14 09:26:39 INFO executor.Executor: Finished task 1.0 in stage 0.0 (TID 1). 1090 bytes result sent to driver
19/03/14 09:26:39 INFO scheduler.TaskSetManager: Finished task 2.0 in stage 0.0 (TID 2) in 13 ms on localhost (1/4)
19/03/14 09:26:39 INFO scheduler.TaskSetManager: Finished task 0.0 in stage 0.0 (TID 0) in 16 ms on localhost (2/4)
19/03/14 09:26:39 INFO scheduler.TaskSetManager: Finished task 1.0 in stage 0.0 (TID 1) in 14 ms on localhost (3/4)
19/03/14 09:26:39 INFO executor.Executor: Finished task 3.0 in stage 0.0 (TID 3). 1090 bytes result sent to driver
19/03/14 09:26:39 INFO scheduler.TaskSetManager: Finished task 3.0 in stage 0.0 (TID 3) in 18 ms on localhost (4/4)
19/03/14 09:26:39 INFO scheduler.TaskSchedulerImpl: Removed TaskSet 0.0, whose tasks have all completed, from pool 
19/03/14 09:26:39 INFO scheduler.DAGScheduler: ShuffleMapStage 0 (keyBy at BroadcastRegionJoin.scala:98) finished in 0.022 s
19/03/14 09:26:39 INFO scheduler.DAGScheduler: looking for newly runnable stages
19/03/14 09:26:39 INFO scheduler.DAGScheduler: running: Set()
19/03/14 09:26:39 INFO scheduler.DAGScheduler: waiting: Set(ResultStage 1)
19/03/14 09:26:39 INFO scheduler.DAGScheduler: failed: Set()
19/03/14 09:26:39 INFO scheduler.DAGScheduler: Submitting ResultStage 1 (ShuffledRDD[7] at groupByKey at BroadcastRegionJoin.scala:99), which has no missing parents
19/03/14 09:26:39 INFO storage.MemoryStore: Block broadcast_1 stored as values in memory (estimated size 4.9 KB, free 11.2 KB)
19/03/14 09:26:39 INFO storage.MemoryStore: Block broadcast_1_piece0 stored as bytes in memory (estimated size 2.5 KB, free 13.7 KB)
19/03/14 09:26:39 INFO storage.BlockManagerInfo: Added broadcast_1_piece0 in memory on localhost:39348 (size: 2.5 KB, free: 521.6 MB)
19/03/14 09:26:39 INFO spark.SparkContext: Created broadcast 1 from broadcast at DAGScheduler.scala:1006
19/03/14 09:26:39 INFO scheduler.DAGScheduler: Submitting 4 missing tasks from ResultStage 1 (ShuffledRDD[7] at groupByKey at BroadcastRegionJoin.scala:99)
19/03/14 09:26:39 INFO scheduler.TaskSchedulerImpl: Adding task set 1.0 with 4 tasks
19/03/14 09:26:39 INFO scheduler.TaskSetManager: Starting task 0.0 in stage 1.0 (TID 4, localhost, partition 0,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:39 INFO scheduler.TaskSetManager: Starting task 1.0 in stage 1.0 (TID 5, localhost, partition 1,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:39 INFO scheduler.TaskSetManager: Starting task 2.0 in stage 1.0 (TID 6, localhost, partition 2,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:39 INFO scheduler.TaskSetManager: Starting task 3.0 in stage 1.0 (TID 7, localhost, partition 3,NODE_LOCAL, 1894 bytes)
19/03/14 09:26:39 INFO executor.Executor: Running task 0.0 in stage 1.0 (TID 4)
19/03/14 09:26:39 INFO executor.Executor: Running task 3.0 in stage 1.0 (TID 7)
19/03/14 09:26:39 INFO executor.Executor: Running task 2.0 in stage 1.0 (TID 6)
19/03/14 09:26:39 INFO executor.Executor: Running task 1.0 in stage 1.0 (TID 5)
19/03/14 09:26:39 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:39 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:39 INFO storage.ShuffleBlockFetcherIterator: Getting 1 non-empty blocks out of 4 blocks
19/03/14 09:26:39 INFO storage.ShuffleBlockFetcherIterator: Started 0 remote fetches in