SuccessConsole Output

Skipping 68 KB.. Full Log
embly-spark3_2.12 ---
[INFO] Modified 0 of 1 .scala files
[INFO] 
[INFO] --- maven-license-plugin:1.10.b1:format (default-cli) @ cannoli-assembly-spark3_2.12 ---
[INFO] Updating license headers...
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary for Cannoli_2.12 0.11.0-SNAPSHOT:
[INFO] 
[INFO] Cannoli_2.12 ....................................... SUCCESS [  2.093 s]
[INFO] Cannoli_2.12: Builder .............................. SUCCESS [  0.012 s]
[INFO] Cannoli_2.12: Core ................................. SUCCESS [  0.444 s]
[INFO] Cannoli_2.12: CLI .................................. SUCCESS [  0.254 s]
[INFO] Cannoli_2.12: Assembly ............................. SUCCESS [  0.014 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESS
[INFO] ------------------------------------------------------------------------
[INFO] Total time:  3.000 s
[INFO] Finished at: 2020-10-11T05:39:34-07:00
[INFO] ------------------------------------------------------------------------
+ popd
~/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu
if test -n "$(git status --porcelain)"
then
    echo "Please run './scripts/format-source'"
    exit 1
fi
git status --porcelain
++ git status --porcelain
+ test -n ''

echo
+ echo

echo "All the tests passed"
+ echo 'All the tests passed'
All the tests passed
echo
+ echo

+ '[' 2.11 == 2.11 ']'
+ echo 'Moving build to Scala 2.11...'
Moving build to Scala 2.11...
+ set +e
+ /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/scripts/move_to_scala_2.11.sh
+ set -e
+ '[' 2.11 == 2.12 ']'
+ '[' 2.4.6 == 2.4.6 ']'
+ echo 'Moving build to Spark 2.x...'
Moving build to Spark 2.x...
+ set +e
+ /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/scripts/move_to_spark_2.sh
+ set -e
+ '[' 2.4.6 == 3.0.1 ']'
+ mvn --settings=/home/jenkins/workspace/settings.xml deploy -DskipTests -Pdistribution
[INFO] Scanning for projects...
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Build Order:
[INFO] 
[INFO] Cannoli_2.11                                                       [pom]
[INFO] Cannoli_2.11: Builder                                              [jar]
[INFO] Cannoli_2.11: Core                                                 [jar]
[INFO] Cannoli_2.11: CLI                                                  [jar]
[INFO] Cannoli_2.11: Assembly                                             [jar]
[INFO] Cannoli_2.11: Distribution                                         [pom]
[INFO] 
[INFO] ---------< org.bdgenomics.cannoli:cannoli-parent-spark2_2.11 >----------
[INFO] Building Cannoli_2.11 0.11.0-SNAPSHOT                              [1/6]
[INFO] --------------------------------[ pom ]---------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.2:enforce (enforce-maven) @ cannoli-parent-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.2:enforce (enforce-java) @ cannoli-parent-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ cannoli-parent-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ cannoli-parent-spark2_2.11 ---
[INFO] Modified 0 of 54 .scala files
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ cannoli-parent-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ cannoli-parent-spark2_2.11 ---
[INFO] Test Source directory: /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/src/test/scala added.
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ cannoli-parent-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-source-plugin:3.0.1:jar-no-fork (attach-sources) @ cannoli-parent-spark2_2.11 ---
[INFO] 
[INFO] --- maven-javadoc-plugin:3.1.0:jar (attach-javadocs) @ cannoli-parent-spark2_2.11 ---
[INFO] 
[INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ cannoli-parent-spark2_2.11 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.2:enforce (enforce-maven) @ cannoli-parent-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.2:enforce (enforce-java) @ cannoli-parent-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ cannoli-parent-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/src/main/scala added.
[INFO] 
[INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ cannoli-parent-spark2_2.11 <<<
[INFO] 
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ cannoli-parent-spark2_2.11 ---
[INFO] No source files found
[INFO] 
[INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-javadocs) > generate-sources @ cannoli-parent-spark2_2.11 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.2:enforce (enforce-maven) @ cannoli-parent-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.2:enforce (enforce-java) @ cannoli-parent-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ cannoli-parent-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/src/main/scala added.
[INFO] 
[INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-javadocs) < generate-sources @ cannoli-parent-spark2_2.11 <<<
[INFO] 
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-javadocs) @ cannoli-parent-spark2_2.11 ---
[INFO] No source files found
[INFO] 
[INFO] --- maven-license-plugin:1.10.b1:check (default) @ cannoli-parent-spark2_2.11 ---
[INFO] Checking licenses...
[INFO] 
[INFO] --- maven-install-plugin:3.0.0-M1:install (default-install) @ cannoli-parent-spark2_2.11 ---
[INFO] Installing /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/pom.xml to /home/jenkins/.m2/repository/org/bdgenomics/cannoli/cannoli-parent-spark2_2.11/0.11.0-SNAPSHOT/cannoli-parent-spark2_2.11-0.11.0-SNAPSHOT.pom
[INFO] 
[INFO] --- maven-deploy-plugin:3.0.0-M1:deploy (default-deploy) @ cannoli-parent-spark2_2.11 ---
Downloading from sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/cannoli/cannoli-parent-spark2_2.11/0.11.0-SNAPSHOT/maven-metadata.xml
Progress (1): 629 B
                   
Downloaded from sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/cannoli/cannoli-parent-spark2_2.11/0.11.0-SNAPSHOT/maven-metadata.xml (629 B at 1.1 kB/s)
Uploading to sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/cannoli/cannoli-parent-spark2_2.11/0.11.0-SNAPSHOT/cannoli-parent-spark2_2.11-0.11.0-20201011.123940-58.pom
Progress (1): 4.1/21 kB
Progress (1): 8.2/21 kB
Progress (1): 12/21 kB 
Progress (1): 16/21 kB
Progress (1): 20/21 kB
Progress (1): 21 kB   
                   
Uploaded to sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/cannoli/cannoli-parent-spark2_2.11/0.11.0-SNAPSHOT/cannoli-parent-spark2_2.11-0.11.0-20201011.123940-58.pom (21 kB at 34 kB/s)
Downloading from sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/cannoli/cannoli-parent-spark2_2.11/maven-metadata.xml
Progress (1): 370 B
                   
Downloaded from sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/cannoli/cannoli-parent-spark2_2.11/maven-metadata.xml (370 B at 2.1 kB/s)
Uploading to sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/cannoli/cannoli-parent-spark2_2.11/0.11.0-SNAPSHOT/maven-metadata.xml
Progress (1): 629 B
                   
Uploaded to sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/cannoli/cannoli-parent-spark2_2.11/0.11.0-SNAPSHOT/maven-metadata.xml (629 B at 1.2 kB/s)
Uploading to sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/cannoli/cannoli-parent-spark2_2.11/maven-metadata.xml
Progress (1): 370 B
                   
Uploaded to sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/cannoli/cannoli-parent-spark2_2.11/maven-metadata.xml (370 B at 678 B/s)
[INFO] 
[INFO] ---------< org.bdgenomics.cannoli:cannoli-builder-spark2_2.11 >---------
[INFO] Building Cannoli_2.11: Builder 0.11.0-SNAPSHOT                     [2/6]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.2:enforce (enforce-maven) @ cannoli-builder-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.2:enforce (enforce-java) @ cannoli-builder-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ cannoli-builder-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/builder/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ cannoli-builder-spark2_2.11 ---
[INFO] Modified 0 of 0 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ cannoli-builder-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/builder/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ cannoli-builder-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ cannoli-builder-spark2_2.11 ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 7 source files to /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/builder/target/scala-2.11.12/classes
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ cannoli-builder-spark2_2.11 ---
[INFO] Test Source directory: /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/builder/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ cannoli-builder-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/builder/src/test/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ cannoli-builder-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ cannoli-builder-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ cannoli-builder-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- maven-jar-plugin:3.1.2:jar (default-jar) @ cannoli-builder-spark2_2.11 ---
[INFO] Building jar: /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/builder/target/cannoli-builder-spark2_2.11-0.11.0-SNAPSHOT.jar
[INFO] 
[INFO] --- maven-source-plugin:3.0.1:jar-no-fork (attach-sources) @ cannoli-builder-spark2_2.11 ---
[INFO] Building jar: /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/builder/target/cannoli-builder-spark2_2.11-0.11.0-SNAPSHOT-sources.jar
[INFO] 
[INFO] --- maven-javadoc-plugin:3.1.0:jar (attach-javadocs) @ cannoli-builder-spark2_2.11 ---
[INFO] 
Loading source files for package org.bdgenomics.cannoli.builder...
Constructing Javadoc information...
Standard Doclet version 1.8.0_191
Building tree for all the packages and classes...
Generating /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/builder/target/apidocs/org/bdgenomics/cannoli/builder/CommandBuilder.html...
Generating /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/builder/target/apidocs/org/bdgenomics/cannoli/builder/CommandBuilders.html...
Generating /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/builder/target/apidocs/org/bdgenomics/cannoli/builder/DockerBuilder.html...
Generating /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/builder/target/apidocs/org/bdgenomics/cannoli/builder/LocalBuilder.html...
Generating /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/builder/target/apidocs/org/bdgenomics/cannoli/builder/SingularityBuilder.html...
Generating /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/builder/target/apidocs/org/bdgenomics/cannoli/builder/package-frame.html...
Generating /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/builder/target/apidocs/org/bdgenomics/cannoli/builder/package-summary.html...
Generating /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/builder/target/apidocs/org/bdgenomics/cannoli/builder/package-tree.html...
Generating /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/builder/target/apidocs/constant-values.html...
Generating /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/builder/target/apidocs/serialized-form.html...
Generating /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/builder/target/apidocs/org/bdgenomics/cannoli/builder/class-use/CommandBuilder.html...
Generating /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/builder/target/apidocs/org/bdgenomics/cannoli/builder/class-use/CommandBuilders.html...
Generating /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/builder/target/apidocs/org/bdgenomics/cannoli/builder/class-use/LocalBuilder.html...
Generating /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/builder/target/apidocs/org/bdgenomics/cannoli/builder/class-use/SingularityBuilder.html...
Generating /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/builder/target/apidocs/org/bdgenomics/cannoli/builder/class-use/DockerBuilder.html...
Generating /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/builder/target/apidocs/org/bdgenomics/cannoli/builder/package-use.html...
Building index for all the packages and classes...
Generating /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/builder/target/apidocs/overview-tree.html...
Generating /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/builder/target/apidocs/index-all.html...
Generating /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/builder/target/apidocs/deprecated-list.html...
Building index for all classes...
Generating /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/builder/target/apidocs/allclasses-frame.html...
Generating /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/builder/target/apidocs/allclasses-noframe.html...
Generating /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/builder/target/apidocs/index.html...
Generating /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/builder/target/apidocs/help-doc.html...
[INFO] Building jar: /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/builder/target/cannoli-builder-spark2_2.11-0.11.0-SNAPSHOT-javadoc.jar
[INFO] 
[INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ cannoli-builder-spark2_2.11 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.2:enforce (enforce-maven) @ cannoli-builder-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.2:enforce (enforce-java) @ cannoli-builder-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ cannoli-builder-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/builder/src/main/scala added.
[INFO] 
[INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ cannoli-builder-spark2_2.11 <<<
[INFO] 
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ cannoli-builder-spark2_2.11 ---
model contains 10 documentable templates
[INFO] Building jar: /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/builder/target/cannoli-builder-spark2_2.11-0.11.0-SNAPSHOT-javadoc.jar
[INFO] 
[INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-javadocs) > generate-sources @ cannoli-builder-spark2_2.11 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.2:enforce (enforce-maven) @ cannoli-builder-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.2:enforce (enforce-java) @ cannoli-builder-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ cannoli-builder-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/builder/src/main/scala added.
[INFO] 
[INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-javadocs) < generate-sources @ cannoli-builder-spark2_2.11 <<<
[INFO] 
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-javadocs) @ cannoli-builder-spark2_2.11 ---
model contains 10 documentable templates
[INFO] Building jar: /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/builder/target/cannoli-builder-spark2_2.11-0.11.0-SNAPSHOT-javadoc.jar
[INFO] 
[INFO] --- maven-license-plugin:1.10.b1:check (default) @ cannoli-builder-spark2_2.11 ---
[INFO] Checking licenses...
[INFO] 
[INFO] --- maven-install-plugin:3.0.0-M1:install (default-install) @ cannoli-builder-spark2_2.11 ---
[INFO] Installing /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/builder/target/cannoli-builder-spark2_2.11-0.11.0-SNAPSHOT.jar to /home/jenkins/.m2/repository/org/bdgenomics/cannoli/cannoli-builder-spark2_2.11/0.11.0-SNAPSHOT/cannoli-builder-spark2_2.11-0.11.0-SNAPSHOT.jar
[INFO] Installing /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/builder/pom.xml to /home/jenkins/.m2/repository/org/bdgenomics/cannoli/cannoli-builder-spark2_2.11/0.11.0-SNAPSHOT/cannoli-builder-spark2_2.11-0.11.0-SNAPSHOT.pom
[INFO] Installing /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/builder/target/cannoli-builder-spark2_2.11-0.11.0-SNAPSHOT-sources.jar to /home/jenkins/.m2/repository/org/bdgenomics/cannoli/cannoli-builder-spark2_2.11/0.11.0-SNAPSHOT/cannoli-builder-spark2_2.11-0.11.0-SNAPSHOT-sources.jar
[INFO] Installing /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/builder/target/cannoli-builder-spark2_2.11-0.11.0-SNAPSHOT-javadoc.jar to /home/jenkins/.m2/repository/org/bdgenomics/cannoli/cannoli-builder-spark2_2.11/0.11.0-SNAPSHOT/cannoli-builder-spark2_2.11-0.11.0-SNAPSHOT-javadoc.jar
[INFO] Installing /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/builder/target/cannoli-builder-spark2_2.11-0.11.0-SNAPSHOT-javadoc.jar to /home/jenkins/.m2/repository/org/bdgenomics/cannoli/cannoli-builder-spark2_2.11/0.11.0-SNAPSHOT/cannoli-builder-spark2_2.11-0.11.0-SNAPSHOT-javadoc.jar
[INFO] Installing /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/builder/target/cannoli-builder-spark2_2.11-0.11.0-SNAPSHOT-javadoc.jar to /home/jenkins/.m2/repository/org/bdgenomics/cannoli/cannoli-builder-spark2_2.11/0.11.0-SNAPSHOT/cannoli-builder-spark2_2.11-0.11.0-SNAPSHOT-javadoc.jar
[INFO] 
[INFO] --- maven-deploy-plugin:3.0.0-M1:deploy (default-deploy) @ cannoli-builder-spark2_2.11 ---
Downloading from sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/cannoli/cannoli-builder-spark2_2.11/0.11.0-SNAPSHOT/maven-metadata.xml
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Uploading to sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/cannoli/cannoli-builder-spark2_2.11/0.11.0-SNAPSHOT/cannoli-builder-spark2_2.11-0.11.0-20201011.123951-58.jar
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Uploading to sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/cannoli/cannoli-builder-spark2_2.11/0.11.0-SNAPSHOT/cannoli-builder-spark2_2.11-0.11.0-20201011.123951-58-javadoc.jar
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Uploading to sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/cannoli/cannoli-builder-spark2_2.11/0.11.0-SNAPSHOT/cannoli-builder-spark2_2.11-0.11.0-20201011.123951-58-javadoc.jar
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Uploading to sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/cannoli/cannoli-builder-spark2_2.11/0.11.0-SNAPSHOT/cannoli-builder-spark2_2.11-0.11.0-20201011.123951-58-javadoc.jar
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Uploaded to sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/cannoli/cannoli-builder-spark2_2.11/0.11.0-SNAPSHOT/cannoli-builder-spark2_2.11-0.11.0-20201011.123951-58-javadoc.jar (375 kB at 683 kB/s)
Downloading from sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/cannoli/cannoli-builder-spark2_2.11/maven-metadata.xml
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Downloaded from sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/cannoli/cannoli-builder-spark2_2.11/maven-metadata.xml (371 B at 2.2 kB/s)
Uploading to sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/cannoli/cannoli-builder-spark2_2.11/0.11.0-SNAPSHOT/maven-metadata.xml
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Uploaded to sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/cannoli/cannoli-builder-spark2_2.11/0.11.0-SNAPSHOT/maven-metadata.xml (1.2 kB at 2.4 kB/s)
Uploading to sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/cannoli/cannoli-builder-spark2_2.11/maven-metadata.xml
Progress (1): 371 B
                   
Uploaded to sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/cannoli/cannoli-builder-spark2_2.11/maven-metadata.xml (371 B at 712 B/s)
[INFO] 
[INFO] ----------< org.bdgenomics.cannoli:cannoli-core-spark2_2.11 >-----------
[INFO] Building Cannoli_2.11: Core 0.11.0-SNAPSHOT                        [3/6]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.2:enforce (enforce-maven) @ cannoli-core-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.2:enforce (enforce-java) @ cannoli-core-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ cannoli-core-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/core/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ cannoli-core-spark2_2.11 ---
[INFO] Modified 0 of 27 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ cannoli-core-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/core/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ cannoli-core-spark2_2.11 ---
[WARNING]  Expected all dependencies to require Scala version: 2.11.12
[WARNING]  com.twitter:chill_2.11:0.9.3 requires scala version: 2.11.12
[WARNING]  org.apache.spark:spark-core_2.11:2.4.6 requires scala version: 2.11.12
[WARNING]  org.json4s:json4s-jackson_2.11:3.5.3 requires scala version: 2.11.11
[WARNING] Multiple versions of scala libraries detected!
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ cannoli-core-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ cannoli-core-spark2_2.11 ---
[INFO] Test Source directory: /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/core/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ cannoli-core-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/core/src/test/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ cannoli-core-spark2_2.11 ---
[WARNING]  Expected all dependencies to require Scala version: 2.11.12
[WARNING]  com.twitter:chill_2.11:0.9.3 requires scala version: 2.11.12
[WARNING]  org.apache.spark:spark-core_2.11:2.4.6 requires scala version: 2.11.12
[WARNING]  org.json4s:json4s-jackson_2.11:3.5.3 requires scala version: 2.11.11
[WARNING] Multiple versions of scala libraries detected!
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ cannoli-core-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ cannoli-core-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ cannoli-core-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- maven-jar-plugin:3.1.2:jar (default-jar) @ cannoli-core-spark2_2.11 ---
[INFO] Building jar: /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/core/target/cannoli-core-spark2_2.11-0.11.0-SNAPSHOT.jar
[INFO] 
[INFO] --- maven-source-plugin:3.0.1:jar-no-fork (attach-sources) @ cannoli-core-spark2_2.11 ---
[INFO] Building jar: /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/core/target/cannoli-core-spark2_2.11-0.11.0-SNAPSHOT-sources.jar
[INFO] 
[INFO] --- maven-javadoc-plugin:3.1.0:jar (attach-javadocs) @ cannoli-core-spark2_2.11 ---
[INFO] 
[INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ cannoli-core-spark2_2.11 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.2:enforce (enforce-maven) @ cannoli-core-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.2:enforce (enforce-java) @ cannoli-core-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ cannoli-core-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/core/src/main/scala added.
[INFO] 
[INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ cannoli-core-spark2_2.11 <<<
[INFO] 
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ cannoli-core-spark2_2.11 ---
[WARNING]  Expected all dependencies to require Scala version: 2.11.12
[WARNING]  com.twitter:chill_2.11:0.9.3 requires scala version: 2.11.12
[WARNING]  org.apache.spark:spark-core_2.11:2.4.6 requires scala version: 2.11.12
[WARNING]  org.json4s:json4s-jackson_2.11:3.5.3 requires scala version: 2.11.11
[WARNING] Multiple versions of scala libraries detected!
[WARNING]  Expected all dependencies to require Scala version: 2.11.12
[WARNING]  com.twitter:chill_2.11:0.9.3 requires scala version: 2.11.12
[WARNING]  org.apache.spark:spark-core_2.11:2.4.6 requires scala version: 2.11.12
[WARNING]  org.json4s:json4s-jackson_2.11:3.5.3 requires scala version: 2.11.11
[WARNING] Multiple versions of scala libraries detected!
model contains 54 documentable templates
[INFO] Building jar: /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/core/target/cannoli-core-spark2_2.11-0.11.0-SNAPSHOT-javadoc.jar
[INFO] 
[INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-javadocs) > generate-sources @ cannoli-core-spark2_2.11 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.2:enforce (enforce-maven) @ cannoli-core-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.2:enforce (enforce-java) @ cannoli-core-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ cannoli-core-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/core/src/main/scala added.
[INFO] 
[INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-javadocs) < generate-sources @ cannoli-core-spark2_2.11 <<<
[INFO] 
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-javadocs) @ cannoli-core-spark2_2.11 ---
[WARNING]  Expected all dependencies to require Scala version: 2.11.12
[WARNING]  com.twitter:chill_2.11:0.9.3 requires scala version: 2.11.12
[WARNING]  org.apache.spark:spark-core_2.11:2.4.6 requires scala version: 2.11.12
[WARNING]  org.json4s:json4s-jackson_2.11:3.5.3 requires scala version: 2.11.11
[WARNING] Multiple versions of scala libraries detected!
[WARNING]  Expected all dependencies to require Scala version: 2.11.12
[WARNING]  com.twitter:chill_2.11:0.9.3 requires scala version: 2.11.12
[WARNING]  org.apache.spark:spark-core_2.11:2.4.6 requires scala version: 2.11.12
[WARNING]  org.json4s:json4s-jackson_2.11:3.5.3 requires scala version: 2.11.11
[WARNING] Multiple versions of scala libraries detected!
model contains 54 documentable templates
[INFO] Building jar: /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/core/target/cannoli-core-spark2_2.11-0.11.0-SNAPSHOT-javadoc.jar
[INFO] 
[INFO] --- maven-license-plugin:1.10.b1:check (default) @ cannoli-core-spark2_2.11 ---
[INFO] Checking licenses...
[INFO] 
[INFO] --- maven-install-plugin:3.0.0-M1:install (default-install) @ cannoli-core-spark2_2.11 ---
[INFO] Installing /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/core/target/cannoli-core-spark2_2.11-0.11.0-SNAPSHOT.jar to /home/jenkins/.m2/repository/org/bdgenomics/cannoli/cannoli-core-spark2_2.11/0.11.0-SNAPSHOT/cannoli-core-spark2_2.11-0.11.0-SNAPSHOT.jar
[INFO] Installing /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/core/pom.xml to /home/jenkins/.m2/repository/org/bdgenomics/cannoli/cannoli-core-spark2_2.11/0.11.0-SNAPSHOT/cannoli-core-spark2_2.11-0.11.0-SNAPSHOT.pom
[INFO] Installing /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/core/target/cannoli-core-spark2_2.11-0.11.0-SNAPSHOT-sources.jar to /home/jenkins/.m2/repository/org/bdgenomics/cannoli/cannoli-core-spark2_2.11/0.11.0-SNAPSHOT/cannoli-core-spark2_2.11-0.11.0-SNAPSHOT-sources.jar
[INFO] Installing /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/core/target/cannoli-core-spark2_2.11-0.11.0-SNAPSHOT-javadoc.jar to /home/jenkins/.m2/repository/org/bdgenomics/cannoli/cannoli-core-spark2_2.11/0.11.0-SNAPSHOT/cannoli-core-spark2_2.11-0.11.0-SNAPSHOT-javadoc.jar
[INFO] Installing /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/core/target/cannoli-core-spark2_2.11-0.11.0-SNAPSHOT-javadoc.jar to /home/jenkins/.m2/repository/org/bdgenomics/cannoli/cannoli-core-spark2_2.11/0.11.0-SNAPSHOT/cannoli-core-spark2_2.11-0.11.0-SNAPSHOT-javadoc.jar
[INFO] 
[INFO] --- maven-deploy-plugin:3.0.0-M1:deploy (default-deploy) @ cannoli-core-spark2_2.11 ---
Downloading from sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/cannoli/cannoli-core-spark2_2.11/0.11.0-SNAPSHOT/maven-metadata.xml
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Uploading to sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/cannoli/cannoli-core-spark2_2.11/0.11.0-SNAPSHOT/cannoli-core-spark2_2.11-0.11.0-20201011.124011-58-sources.jar
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Uploading to sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/cannoli/cannoli-core-spark2_2.11/0.11.0-SNAPSHOT/cannoli-core-spark2_2.11-0.11.0-20201011.124011-58-javadoc.jar
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Uploading to sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/cannoli/cannoli-core-spark2_2.11/0.11.0-SNAPSHOT/cannoli-core-spark2_2.11-0.11.0-20201011.124011-58-javadoc.jar
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Downloading from sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/cannoli/cannoli-core-spark2_2.11/maven-metadata.xml
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Uploading to sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/cannoli/cannoli-core-spark2_2.11/0.11.0-SNAPSHOT/maven-metadata.xml
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Uploaded to sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/cannoli/cannoli-core-spark2_2.11/0.11.0-SNAPSHOT/maven-metadata.xml (1.2 kB at 2.4 kB/s)
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Progress (1): 368 B
                   
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[INFO] 
[INFO] -----------< org.bdgenomics.cannoli:cannoli-cli-spark2_2.11 >-----------
[INFO] Building Cannoli_2.11: CLI 0.11.0-SNAPSHOT                         [4/6]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.2:enforce (enforce-maven) @ cannoli-cli-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.2:enforce (enforce-java) @ cannoli-cli-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:timestamp-property (timestamp-property) @ cannoli-cli-spark2_2.11 ---
[INFO] 
[INFO] --- git-commit-id-plugin:2.2.2:revision (default) @ cannoli-cli-spark2_2.11 ---
[INFO] 
[INFO] --- templating-maven-plugin:1.0.0:filter-sources (filter-src) @ cannoli-cli-spark2_2.11 ---
[INFO] Coping files with filtering to temporary directory.
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 1 resource
[INFO] No files needs to be copied to output directory. Up to date: /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/cli/target/generated-sources/java-templates
[INFO] Source directory: /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/cli/target/generated-sources/java-templates added.
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ cannoli-cli-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/cli/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ cannoli-cli-spark2_2.11 ---
[INFO] Modified 0 of 26 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ cannoli-cli-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/cli/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ cannoli-cli-spark2_2.11 ---
[WARNING]  Expected all dependencies to require Scala version: 2.11.12
[WARNING]  com.twitter:chill_2.11:0.9.3 requires scala version: 2.11.12
[WARNING]  org.apache.spark:spark-core_2.11:2.4.6 requires scala version: 2.11.12
[WARNING]  org.json4s:json4s-jackson_2.11:3.5.3 requires scala version: 2.11.11
[WARNING] Multiple versions of scala libraries detected!
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ cannoli-cli-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ cannoli-cli-spark2_2.11 ---
[INFO] Test Source directory: /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/cli/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ cannoli-cli-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 5 resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ cannoli-cli-spark2_2.11 ---
[WARNING]  Expected all dependencies to require Scala version: 2.11.12
[WARNING]  com.twitter:chill_2.11:0.9.3 requires scala version: 2.11.12
[WARNING]  org.apache.spark:spark-core_2.11:2.4.6 requires scala version: 2.11.12
[WARNING]  org.json4s:json4s-jackson_2.11:3.5.3 requires scala version: 2.11.11
[WARNING] Multiple versions of scala libraries detected!
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ cannoli-cli-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ cannoli-cli-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ cannoli-cli-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- maven-jar-plugin:3.1.2:jar (default-jar) @ cannoli-cli-spark2_2.11 ---
[INFO] Building jar: /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/cli/target/cannoli-cli-spark2_2.11-0.11.0-SNAPSHOT.jar
[INFO] 
[INFO] --- maven-source-plugin:3.0.1:jar-no-fork (attach-sources) @ cannoli-cli-spark2_2.11 ---
[INFO] Building jar: /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/cli/target/cannoli-cli-spark2_2.11-0.11.0-SNAPSHOT-sources.jar
[INFO] 
[INFO] --- maven-javadoc-plugin:3.1.0:jar (attach-javadocs) @ cannoli-cli-spark2_2.11 ---
[INFO] The goal 'org.apache.maven.plugins:maven-javadoc-plugin:3.1.0:javadoc' has not been previously called for the module: 'org.bdgenomics.cannoli:cannoli-core-spark2_2.11:jar:0.11.0-SNAPSHOT'. Trying to invoke it...
[WARNING] Creating fake javadoc directory to prevent repeated invocations: /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/core/target/apidocs
[ERROR] Error fetching link: /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/core/target/apidocs. Ignored it.
[INFO] 
Loading source files for package org.bdgenomics.cannoli.cli...
Constructing Javadoc information...
Standard Doclet version 1.8.0_191
Building tree for all the packages and classes...
Generating /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/cli/target/apidocs/org/bdgenomics/cannoli/cli/About.html...
Generating /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/cli/target/apidocs/org/bdgenomics/cannoli/cli/package-frame.html...
Generating /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/cli/target/apidocs/org/bdgenomics/cannoli/cli/package-summary.html...
Generating /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/cli/target/apidocs/org/bdgenomics/cannoli/cli/package-tree.html...
Generating /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/cli/target/apidocs/constant-values.html...
Generating /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/cli/target/apidocs/org/bdgenomics/cannoli/cli/class-use/About.html...
Generating /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/cli/target/apidocs/org/bdgenomics/cannoli/cli/package-use.html...
Building index for all the packages and classes...
Generating /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/cli/target/apidocs/overview-tree.html...
Generating /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/cli/target/apidocs/index-all.html...
Generating /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/cli/target/apidocs/deprecated-list.html...
Building index for all classes...
Generating /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/cli/target/apidocs/allclasses-frame.html...
Generating /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/cli/target/apidocs/allclasses-noframe.html...
Generating /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/cli/target/apidocs/index.html...
Generating /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/cli/target/apidocs/help-doc.html...
[INFO] Building jar: /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/cli/target/cannoli-cli-spark2_2.11-0.11.0-SNAPSHOT-javadoc.jar
[INFO] 
[INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ cannoli-cli-spark2_2.11 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.2:enforce (enforce-maven) @ cannoli-cli-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.2:enforce (enforce-java) @ cannoli-cli-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:timestamp-property (timestamp-property) @ cannoli-cli-spark2_2.11 ---
[INFO] 
[INFO] --- git-commit-id-plugin:2.2.2:revision (default) @ cannoli-cli-spark2_2.11 ---
[INFO] 
[INFO] --- templating-maven-plugin:1.0.0:filter-sources (filter-src) @ cannoli-cli-spark2_2.11 ---
[INFO] Coping files with filtering to temporary directory.
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 1 resource
[INFO] No files needs to be copied to output directory. Up to date: /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/cli/target/generated-sources/java-templates
[INFO] Source directory: /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/cli/target/generated-sources/java-templates added.
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ cannoli-cli-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/cli/src/main/scala added.
[INFO] 
[INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ cannoli-cli-spark2_2.11 <<<
[INFO] 
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ cannoli-cli-spark2_2.11 ---
[WARNING]  Expected all dependencies to require Scala version: 2.11.12
[WARNING]  com.twitter:chill_2.11:0.9.3 requires scala version: 2.11.12
[WARNING]  org.apache.spark:spark-core_2.11:2.4.6 requires scala version: 2.11.12
[WARNING]  org.json4s:json4s-jackson_2.11:3.5.3 requires scala version: 2.11.11
[WARNING] Multiple versions of scala libraries detected!
[WARNING]  Expected all dependencies to require Scala version: 2.11.12
[WARNING]  com.twitter:chill_2.11:0.9.3 requires scala version: 2.11.12
[WARNING]  org.apache.spark:spark-core_2.11:2.4.6 requires scala version: 2.11.12
[WARNING]  org.json4s:json4s-jackson_2.11:3.5.3 requires scala version: 2.11.11
[WARNING] Multiple versions of scala libraries detected!
model contains 78 documentable templates
[INFO] Building jar: /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/cli/target/cannoli-cli-spark2_2.11-0.11.0-SNAPSHOT-javadoc.jar
[INFO] 
[INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-javadocs) > generate-sources @ cannoli-cli-spark2_2.11 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.2:enforce (enforce-maven) @ cannoli-cli-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.2:enforce (enforce-java) @ cannoli-cli-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:timestamp-property (timestamp-property) @ cannoli-cli-spark2_2.11 ---
[INFO] 
[INFO] --- git-commit-id-plugin:2.2.2:revision (default) @ cannoli-cli-spark2_2.11 ---
[INFO] 
[INFO] --- templating-maven-plugin:1.0.0:filter-sources (filter-src) @ cannoli-cli-spark2_2.11 ---
[INFO] Coping files with filtering to temporary directory.
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 1 resource
[INFO] No files needs to be copied to output directory. Up to date: /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/cli/target/generated-sources/java-templates
[INFO] Source directory: /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/cli/target/generated-sources/java-templates added.
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ cannoli-cli-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/cli/src/main/scala added.
[INFO] 
[INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-javadocs) < generate-sources @ cannoli-cli-spark2_2.11 <<<
[INFO] 
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-javadocs) @ cannoli-cli-spark2_2.11 ---
[WARNING]  Expected all dependencies to require Scala version: 2.11.12
[WARNING]  com.twitter:chill_2.11:0.9.3 requires scala version: 2.11.12
[WARNING]  org.apache.spark:spark-core_2.11:2.4.6 requires scala version: 2.11.12
[WARNING]  org.json4s:json4s-jackson_2.11:3.5.3 requires scala version: 2.11.11
[WARNING] Multiple versions of scala libraries detected!
[WARNING]  Expected all dependencies to require Scala version: 2.11.12
[WARNING]  com.twitter:chill_2.11:0.9.3 requires scala version: 2.11.12
[WARNING]  org.apache.spark:spark-core_2.11:2.4.6 requires scala version: 2.11.12
[WARNING]  org.json4s:json4s-jackson_2.11:3.5.3 requires scala version: 2.11.11
[WARNING] Multiple versions of scala libraries detected!
model contains 78 documentable templates
[INFO] Building jar: /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/cli/target/cannoli-cli-spark2_2.11-0.11.0-SNAPSHOT-javadoc.jar
[INFO] 
[INFO] --- maven-license-plugin:1.10.b1:check (default) @ cannoli-cli-spark2_2.11 ---
[INFO] Checking licenses...
[INFO] 
[INFO] --- maven-install-plugin:3.0.0-M1:install (default-install) @ cannoli-cli-spark2_2.11 ---
[INFO] Installing /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/cli/target/cannoli-cli-spark2_2.11-0.11.0-SNAPSHOT.jar to /home/jenkins/.m2/repository/org/bdgenomics/cannoli/cannoli-cli-spark2_2.11/0.11.0-SNAPSHOT/cannoli-cli-spark2_2.11-0.11.0-SNAPSHOT.jar
[INFO] Installing /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/cli/pom.xml to /home/jenkins/.m2/repository/org/bdgenomics/cannoli/cannoli-cli-spark2_2.11/0.11.0-SNAPSHOT/cannoli-cli-spark2_2.11-0.11.0-SNAPSHOT.pom
[INFO] Installing /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/cli/target/cannoli-cli-spark2_2.11-0.11.0-SNAPSHOT-sources.jar to /home/jenkins/.m2/repository/org/bdgenomics/cannoli/cannoli-cli-spark2_2.11/0.11.0-SNAPSHOT/cannoli-cli-spark2_2.11-0.11.0-SNAPSHOT-sources.jar
[INFO] Installing /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/cli/target/cannoli-cli-spark2_2.11-0.11.0-SNAPSHOT-javadoc.jar to /home/jenkins/.m2/repository/org/bdgenomics/cannoli/cannoli-cli-spark2_2.11/0.11.0-SNAPSHOT/cannoli-cli-spark2_2.11-0.11.0-SNAPSHOT-javadoc.jar
[INFO] Installing /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/cli/target/cannoli-cli-spark2_2.11-0.11.0-SNAPSHOT-javadoc.jar to /home/jenkins/.m2/repository/org/bdgenomics/cannoli/cannoli-cli-spark2_2.11/0.11.0-SNAPSHOT/cannoli-cli-spark2_2.11-0.11.0-SNAPSHOT-javadoc.jar
[INFO] Installing /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/cli/target/cannoli-cli-spark2_2.11-0.11.0-SNAPSHOT-javadoc.jar to /home/jenkins/.m2/repository/org/bdgenomics/cannoli/cannoli-cli-spark2_2.11/0.11.0-SNAPSHOT/cannoli-cli-spark2_2.11-0.11.0-SNAPSHOT-javadoc.jar
[INFO] 
[INFO] --- maven-deploy-plugin:3.0.0-M1:deploy (default-deploy) @ cannoli-cli-spark2_2.11 ---
Downloading from sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/cannoli/cannoli-cli-spark2_2.11/0.11.0-SNAPSHOT/maven-metadata.xml
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Downloaded from sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/cannoli/cannoli-cli-spark2_2.11/0.11.0-SNAPSHOT/maven-metadata.xml (1.2 kB at 7.6 kB/s)
Uploading to sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/cannoli/cannoli-cli-spark2_2.11/0.11.0-SNAPSHOT/cannoli-cli-spark2_2.11-0.11.0-20201011.124037-58.jar
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Uploaded to sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/cannoli/cannoli-cli-spark2_2.11/0.11.0-SNAPSHOT/cannoli-cli-spark2_2.11-0.11.0-20201011.124037-58.jar (233 kB at 293 kB/s)
Uploading to sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/cannoli/cannoli-cli-spark2_2.11/0.11.0-SNAPSHOT/cannoli-cli-spark2_2.11-0.11.0-20201011.124037-58.pom
Progress (1): 3.7 kB
                    
Uploaded to sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/cannoli/cannoli-cli-spark2_2.11/0.11.0-SNAPSHOT/cannoli-cli-spark2_2.11-0.11.0-20201011.124037-58.pom (3.7 kB at 6.2 kB/s)
Uploading to sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/cannoli/cannoli-cli-spark2_2.11/0.11.0-SNAPSHOT/cannoli-cli-spark2_2.11-0.11.0-20201011.124037-58-sources.jar
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Uploaded to sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/cannoli/cannoli-cli-spark2_2.11/0.11.0-SNAPSHOT/cannoli-cli-spark2_2.11-0.11.0-20201011.124037-58-sources.jar (44 kB at 85 kB/s)
Uploading to sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/cannoli/cannoli-cli-spark2_2.11/0.11.0-SNAPSHOT/cannoli-cli-spark2_2.11-0.11.0-20201011.124037-58-javadoc.jar
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Uploaded to sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/cannoli/cannoli-cli-spark2_2.11/0.11.0-SNAPSHOT/cannoli-cli-spark2_2.11-0.11.0-20201011.124037-58-javadoc.jar (638 kB at 1.1 MB/s)
Uploading to sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/cannoli/cannoli-cli-spark2_2.11/0.11.0-SNAPSHOT/cannoli-cli-spark2_2.11-0.11.0-20201011.124037-58-javadoc.jar
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Uploaded to sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/cannoli/cannoli-cli-spark2_2.11/0.11.0-SNAPSHOT/cannoli-cli-spark2_2.11-0.11.0-20201011.124037-58-javadoc.jar (638 kB at 1.2 MB/s)
Uploading to sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/cannoli/cannoli-cli-spark2_2.11/0.11.0-SNAPSHOT/cannoli-cli-spark2_2.11-0.11.0-20201011.124037-58-javadoc.jar
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Uploaded to sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/cannoli/cannoli-cli-spark2_2.11/0.11.0-SNAPSHOT/cannoli-cli-spark2_2.11-0.11.0-20201011.124037-58-javadoc.jar (638 kB at 1.1 MB/s)
Downloading from sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/cannoli/cannoli-cli-spark2_2.11/maven-metadata.xml
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Downloaded from sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/cannoli/cannoli-cli-spark2_2.11/maven-metadata.xml (367 B at 2.1 kB/s)
Uploading to sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/cannoli/cannoli-cli-spark2_2.11/0.11.0-SNAPSHOT/maven-metadata.xml
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Uploaded to sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/cannoli/cannoli-cli-spark2_2.11/0.11.0-SNAPSHOT/maven-metadata.xml (1.2 kB at 2.4 kB/s)
Uploading to sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/cannoli/cannoli-cli-spark2_2.11/maven-metadata.xml
Progress (1): 367 B
                   
Uploaded to sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/cannoli/cannoli-cli-spark2_2.11/maven-metadata.xml (367 B at 715 B/s)
[INFO] 
[INFO] --------< org.bdgenomics.cannoli:cannoli-assembly-spark2_2.11 >---------
[INFO] Building Cannoli_2.11: Assembly 0.11.0-SNAPSHOT                    [5/6]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.2:enforce (enforce-maven) @ cannoli-assembly-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.2:enforce (enforce-java) @ cannoli-assembly-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ cannoli-assembly-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/assembly/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ cannoli-assembly-spark2_2.11 ---
[INFO] Modified 0 of 1 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ cannoli-assembly-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/assembly/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ cannoli-assembly-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ cannoli-assembly-spark2_2.11 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ cannoli-assembly-spark2_2.11 ---
[INFO] Test Source directory: /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/assembly/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ cannoli-assembly-spark2_2.11 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/assembly/src/test/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ cannoli-assembly-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ cannoli-assembly-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ cannoli-assembly-spark2_2.11 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- maven-jar-plugin:3.1.2:jar (default-jar) @ cannoli-assembly-spark2_2.11 ---
[INFO] Building jar: /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/assembly/target/cannoli-assembly-spark2_2.11-0.11.0-SNAPSHOT.jar
[INFO] 
[INFO] --- maven-source-plugin:3.0.1:jar-no-fork (attach-sources) @ cannoli-assembly-spark2_2.11 ---
[INFO] Building jar: /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/assembly/target/cannoli-assembly-spark2_2.11-0.11.0-SNAPSHOT-sources.jar
[INFO] 
[INFO] --- maven-javadoc-plugin:3.1.0:jar (attach-javadocs) @ cannoli-assembly-spark2_2.11 ---
[INFO] 
[INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ cannoli-assembly-spark2_2.11 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.2:enforce (enforce-maven) @ cannoli-assembly-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.2:enforce (enforce-java) @ cannoli-assembly-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ cannoli-assembly-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/assembly/src/main/scala added.
[INFO] 
[INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ cannoli-assembly-spark2_2.11 <<<
[INFO] 
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ cannoli-assembly-spark2_2.11 ---
model contains 6 documentable templates
[INFO] Building jar: /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/assembly/target/cannoli-assembly-spark2_2.11-0.11.0-SNAPSHOT-javadoc.jar
[INFO] 
[INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-javadocs) > generate-sources @ cannoli-assembly-spark2_2.11 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.2:enforce (enforce-maven) @ cannoli-assembly-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.2:enforce (enforce-java) @ cannoli-assembly-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ cannoli-assembly-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/assembly/src/main/scala added.
[INFO] 
[INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-javadocs) < generate-sources @ cannoli-assembly-spark2_2.11 <<<
[INFO] 
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-javadocs) @ cannoli-assembly-spark2_2.11 ---
model contains 6 documentable templates
[INFO] Building jar: /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/assembly/target/cannoli-assembly-spark2_2.11-0.11.0-SNAPSHOT-javadoc.jar
[INFO] 
[INFO] --- maven-shade-plugin:3.2.0:shade (default) @ cannoli-assembly-spark2_2.11 ---
[INFO] Including org.bdgenomics.cannoli:cannoli-cli-spark2_2.11:jar:0.11.0-SNAPSHOT in the shaded jar.
[INFO] Including org.bdgenomics.adam:adam-cli-spark2_2.11:jar:0.32.0 in the shaded jar.
[INFO] Including org.bdgenomics.utils:utils-misc-spark2_2.11:jar:0.3.0 in the shaded jar.
[INFO] Including org.scala-lang:scala-library:jar:2.11.12 in the shaded jar.
[INFO] Including org.bdgenomics.utils:utils-io-spark2_2.11:jar:0.3.0 in the shaded jar.
[INFO] Including org.apache.httpcomponents:httpclient:jar:4.5.7 in the shaded jar.
[INFO] Including org.apache.httpcomponents:httpcore:jar:4.4.11 in the shaded jar.
[INFO] Including commons-logging:commons-logging:jar:1.2 in the shaded jar.
[INFO] Including commons-codec:commons-codec:jar:1.11 in the shaded jar.
[INFO] Including org.bdgenomics.utils:utils-cli-spark2_2.11:jar:0.3.0 in the shaded jar.
[INFO] Including org.clapper:grizzled-slf4j_2.11:jar:1.3.4 in the shaded jar.
[INFO] Including org.slf4j:slf4j-api:jar:1.7.9 in the shaded jar.
[INFO] Including org.apache.parquet:parquet-avro:jar:1.10.1 in the shaded jar.
[INFO] Including org.apache.parquet:parquet-column:jar:1.10.1 in the shaded jar.
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[INFO] Including org.apache.parquet:parquet-jackson:jar:1.10.1 in the shaded jar.
[INFO] Including commons-pool:commons-pool:jar:1.6 in the shaded jar.
[INFO] Including org.apache.parquet:parquet-format:jar:2.4.0 in the shaded jar.
[INFO] Including org.bdgenomics.bdg-formats:bdg-formats:jar:0.15.0 in the shaded jar.
[INFO] Including org.apache.avro:avro:jar:1.8.2 in the shaded jar.
[INFO] Including org.codehaus.jackson:jackson-core-asl:jar:1.9.13 in the shaded jar.
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[INFO] Including org.apache.commons:commons-compress:jar:1.8.1 in the shaded jar.
[INFO] Including org.tukaani:xz:jar:1.5 in the shaded jar.
[INFO] Including org.bdgenomics.adam:adam-core-spark2_2.11:jar:0.32.0 in the shaded jar.
[INFO] Including org.bdgenomics.utils:utils-intervalrdd-spark2_2.11:jar:0.3.0 in the shaded jar.
[INFO] Including com.esotericsoftware.kryo:kryo:jar:2.24.0 in the shaded jar.
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[INFO] Including com.github.samtools:htsjdk:jar:2.19.0 in the shaded jar.
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[INFO] Including org.codehaus.mojo:animal-sniffer-annotations:jar:1.17 in the shaded jar.
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[INFO] Including org.bdgenomics.cannoli:cannoli-core-spark2_2.11:jar:0.11.0-SNAPSHOT in the shaded jar.
[INFO] Including org.bdgenomics.cannoli:cannoli-builder-spark2_2.11:jar:0.11.0-SNAPSHOT in the shaded jar.
[WARNING] WORKAROUND:  refusing to add class org/apache/parquet/avro/AvroSchemaConverter$2.class from jar /home/jenkins/.m2/repository/org/apache/parquet/parquet-avro/1.10.1/parquet-avro-1.10.1.jar
[WARNING] WORKAROUND:  refusing to add class org/apache/parquet/avro/AvroSchemaConverter.class from jar /home/jenkins/.m2/repository/org/apache/parquet/parquet-avro/1.10.1/parquet-avro-1.10.1.jar
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[INFO] Replacing original artifact with shaded artifact.
[INFO] Replacing /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/assembly/target/cannoli-assembly-spark2_2.11-0.11.0-SNAPSHOT.jar with /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/assembly/target/cannoli-assembly-spark2_2.11-0.11.0-SNAPSHOT-shaded.jar
[INFO] 
[INFO] --- maven-license-plugin:1.10.b1:check (default) @ cannoli-assembly-spark2_2.11 ---
[INFO] Checking licenses...
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[INFO] --- maven-install-plugin:3.0.0-M1:install (default-install) @ cannoli-assembly-spark2_2.11 ---
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[INFO] Installing /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/assembly/pom.xml to /home/jenkins/.m2/repository/org/bdgenomics/cannoli/cannoli-assembly-spark2_2.11/0.11.0-SNAPSHOT/cannoli-assembly-spark2_2.11-0.11.0-SNAPSHOT.pom
[INFO] Installing /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/assembly/target/cannoli-assembly-spark2_2.11-0.11.0-SNAPSHOT-sources.jar to /home/jenkins/.m2/repository/org/bdgenomics/cannoli/cannoli-assembly-spark2_2.11/0.11.0-SNAPSHOT/cannoli-assembly-spark2_2.11-0.11.0-SNAPSHOT-sources.jar
[INFO] Installing /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/assembly/target/cannoli-assembly-spark2_2.11-0.11.0-SNAPSHOT-javadoc.jar to /home/jenkins/.m2/repository/org/bdgenomics/cannoli/cannoli-assembly-spark2_2.11/0.11.0-SNAPSHOT/cannoli-assembly-spark2_2.11-0.11.0-SNAPSHOT-javadoc.jar
[INFO] Installing /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/assembly/target/cannoli-assembly-spark2_2.11-0.11.0-SNAPSHOT-javadoc.jar to /home/jenkins/.m2/repository/org/bdgenomics/cannoli/cannoli-assembly-spark2_2.11/0.11.0-SNAPSHOT/cannoli-assembly-spark2_2.11-0.11.0-SNAPSHOT-javadoc.jar
[INFO] 
[INFO] --- maven-deploy-plugin:3.0.0-M1:deploy (default-deploy) @ cannoli-assembly-spark2_2.11 ---
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Uploading to sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/cannoli/cannoli-assembly-spark2_2.11/0.11.0-SNAPSHOT/cannoli-assembly-spark2_2.11-0.11.0-20201011.124052-58-javadoc.jar
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Downloading from sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/cannoli/cannoli-assembly-spark2_2.11/maven-metadata.xml
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Downloaded from sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/cannoli/cannoli-assembly-spark2_2.11/maven-metadata.xml (372 B at 2.2 kB/s)
Uploading to sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/cannoli/cannoli-assembly-spark2_2.11/0.11.0-SNAPSHOT/maven-metadata.xml
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Uploading to sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/cannoli/cannoli-assembly-spark2_2.11/maven-metadata.xml
Progress (1): 372 B
                   
Uploaded to sonatype-nexus-snapshots: https://oss.sonatype.org/content/repositories/snapshots/org/bdgenomics/cannoli/cannoli-assembly-spark2_2.11/maven-metadata.xml (372 B at 709 B/s)
[INFO] 
[INFO] ------< org.bdgenomics.cannoli:cannoli-distribution-spark2_2.11 >-------
[INFO] Building Cannoli_2.11: Distribution 0.11.0-SNAPSHOT                [6/6]
[INFO] --------------------------------[ pom ]---------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.2:enforce (enforce-maven) @ cannoli-distribution-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.2:enforce (enforce-java) @ cannoli-distribution-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ cannoli-distribution-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/distribution/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ cannoli-distribution-spark2_2.11 ---
[INFO] Modified 0 of 0 .scala files
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ cannoli-distribution-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ cannoli-distribution-spark2_2.11 ---
[INFO] Test Source directory: /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/distribution/src/test/scala added.
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ cannoli-distribution-spark2_2.11 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-source-plugin:3.0.1:jar-no-fork (attach-sources) @ cannoli-distribution-spark2_2.11 ---
[INFO] 
[INFO] --- maven-javadoc-plugin:3.1.0:jar (attach-javadocs) @ cannoli-distribution-spark2_2.11 ---
[INFO] 
[INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ cannoli-distribution-spark2_2.11 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.2:enforce (enforce-maven) @ cannoli-distribution-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.2:enforce (enforce-java) @ cannoli-distribution-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ cannoli-distribution-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/distribution/src/main/scala added.
[INFO] 
[INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ cannoli-distribution-spark2_2.11 <<<
[INFO] 
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ cannoli-distribution-spark2_2.11 ---
[INFO] No source files found
[INFO] 
[INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-javadocs) > generate-sources @ cannoli-distribution-spark2_2.11 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.2:enforce (enforce-maven) @ cannoli-distribution-spark2_2.11 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.2:enforce (enforce-java) @ cannoli-distribution-spark2_2.11 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ cannoli-distribution-spark2_2.11 ---
[INFO] Source directory: /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/distribution/src/main/scala added.
[INFO] 
[INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-javadocs) < generate-sources @ cannoli-distribution-spark2_2.11 <<<
[INFO] 
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-javadocs) @ cannoli-distribution-spark2_2.11 ---
[INFO] No source files found
[INFO] 
[INFO] --- maven-assembly-plugin:3.1.0:single (default) @ cannoli-distribution-spark2_2.11 ---
[INFO] Reading assembly descriptor: src/main/assembly/assembly.xml
[INFO] Building tar: /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/distribution/target/cannoli-distribution-spark2_2.11-0.11.0-SNAPSHOT-bin.tar.gz
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[INFO] Building tar: /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/distribution/target/cannoli-distribution-spark2_2.11-0.11.0-SNAPSHOT-bin.tar.bz2
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[INFO] Building zip: /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/distribution/target/cannoli-distribution-spark2_2.11-0.11.0-SNAPSHOT-bin.zip
[INFO] 
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[INFO] Checking licenses...
[INFO] 
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[INFO] Installing /home/jenkins/workspace/cannoli/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.11/SPARK_VERSION/2.4.6/label/ubuntu/distribution/target/cannoli-distribution-spark2_2.11-0.11.0-SNAPSHOT-bin.tar.gz to /home/jenkins/.m2/repository/org/bdgenomics/cannoli/cannoli-distribution-spark2_2.11/0.11.0-SNAPSHOT/cannoli-distribution-spark2_2.11-0.11.0-SNAPSHOT-bin.tar.gz
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[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary for Cannoli_2.11 0.11.0-SNAPSHOT:
[INFO] 
[INFO] Cannoli_2.11 ....................................... SUCCESS [  6.390 s]
[INFO] Cannoli_2.11: Builder .............................. SUCCESS [ 13.252 s]
[INFO] Cannoli_2.11: Core ................................. SUCCESS [ 20.323 s]
[INFO] Cannoli_2.11: CLI .................................. SUCCESS [ 26.101 s]
[INFO] Cannoli_2.11: Assembly ............................. SUCCESS [ 16.719 s]
[INFO] Cannoli_2.11: Distribution ......................... SUCCESS [ 31.112 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESS
[INFO] ------------------------------------------------------------------------
[INFO] Total time:  01:54 min
[INFO] Finished at: 2020-10-11T05:41:30-07:00
[INFO] ------------------------------------------------------------------------
Recording test results
Publishing Scoverage XML and HTML report...
Sending e-mails to: heuermh@gmail.com fnothaft@berkeley.edu
Finished: SUCCESS