Console Output

Started by upstream project "ADAM-prb" build number 3089
originally caused by:
 GitHub pull request #2255 of commit a43c6c125a9503910e560f85f85df362fb7aba52 automatically merged.
[EnvInject] - Loading node environment variables.
Building remotely on amp-jenkins-staging-worker-02 (ubuntu ubuntu-gpu ubuntu-avx2 staging-02 staging) in workspace /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu
Wiping out workspace first.
Cloning the remote Git repository
Cloning repository https://github.com/bigdatagenomics/adam.git
 > git init /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu # timeout=10
Fetching upstream changes from https://github.com/bigdatagenomics/adam.git
 > git --version # timeout=10
 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/heads/*:refs/remotes/origin/* # timeout=15
 > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10
 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10
 > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10
Fetching upstream changes from https://github.com/bigdatagenomics/adam.git
 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/*:refs/remotes/origin/pr/* # timeout=15
Checking out Revision a22048c1fec9ce21d390188a350d1f98b0a505b3 (origin/pr/2255/merge)
 > git config core.sparsecheckout # timeout=10
 > git checkout -f a22048c1fec9ce21d390188a350d1f98b0a505b3
 > git rev-list 97972c50f938fdb7c84c10111bdac9513c564757 # timeout=10
First time build. Skipping changelog.
[ubuntu] $ /bin/bash /tmp/hudson8542979002473185730.sh
+ set -e
+ unset SPARK_TESTING
+ export JAVA_HOME=/usr/lib/jvm/java-8-oracle
+ JAVA_HOME=/usr/lib/jvm/java-8-oracle
+ export CONDA_BIN=/home/anaconda/bin/
+ CONDA_BIN=/home/anaconda/bin/
+ export PATH=/usr/lib/jvm/java-8-oracle/bin/:/home/anaconda/bin/:/home/jenkins/gems/bin:/usr/local/go/bin:/home/jenkins/go-projects/bin:/home/jenkins/anaconda2/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games
+ PATH=/usr/lib/jvm/java-8-oracle/bin/:/home/anaconda/bin/:/home/jenkins/gems/bin:/usr/local/go/bin:/home/jenkins/go-projects/bin:/home/jenkins/anaconda2/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games
+ set +x
+ /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/scripts/jenkins-test

# make a tempdir for writing maven cruft to
ADAM_MVN_TMP_DIR=$(mktemp -d -t adamTestMvnXXXXXXX)
mktemp -d -t adamTestMvnXXXXXXX
++ mktemp -d -t adamTestMvnXXXXXXX
+ ADAM_MVN_TMP_DIR=/tmp/adamTestMvnoZ6o5c1

# add this tempdir to the poms...
find . -name pom.xml \
    -exec sed -i.bak \
    -e "s:sun.io.serialization.extendedDebugInfo=true:sun.io.serialization.extendedDebugInfo=true -Djava.io.tmpdir=${ADAM_MVN_TMP_DIR}:g" \
    {} \;
+ find . -name pom.xml -exec sed -i.bak -e 's:sun.io.serialization.extendedDebugInfo=true:sun.io.serialization.extendedDebugInfo=true -Djava.io.tmpdir=/tmp/adamTestMvnoZ6o5c1:g' '{}' ';'
find . -name "*.bak" -exec rm -f {} \;
+ find . -name '*.bak' -exec rm -f '{}' ';'

# variable declarations
export PATH=${JAVA_HOME}/bin/:${PATH}
+ export PATH=/usr/lib/jvm/java-8-oracle/bin/:/usr/lib/jvm/java-8-oracle/bin/:/home/anaconda/bin/:/home/jenkins/gems/bin:/usr/local/go/bin:/home/jenkins/go-projects/bin:/home/jenkins/anaconda2/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games
+ PATH=/usr/lib/jvm/java-8-oracle/bin/:/usr/lib/jvm/java-8-oracle/bin/:/home/anaconda/bin/:/home/jenkins/gems/bin:/usr/local/go/bin:/home/jenkins/go-projects/bin:/home/jenkins/anaconda2/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games
export MAVEN_OPTS="-Xmx1536m -XX:MaxPermSize=1g -Dfile.encoding=utf-8"
+ export 'MAVEN_OPTS=-Xmx1536m -XX:MaxPermSize=1g -Dfile.encoding=utf-8'
+ MAVEN_OPTS='-Xmx1536m -XX:MaxPermSize=1g -Dfile.encoding=utf-8'
DIR=$( cd $( dirname ${BASH_SOURCE[0]} ) && pwd )
 cd $( dirname ${BASH_SOURCE[0]} ) && pwd 
 dirname ${BASH_SOURCE[0]} 
+++ dirname /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/scripts/jenkins-test
++ cd /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/scripts
++ pwd
+ DIR=/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/scripts
PROJECT_ROOT=${DIR}/..
+ PROJECT_ROOT=/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/scripts/..
VERSION=$(grep "<version>" ${PROJECT_ROOT}/pom.xml  | head -2 | tail -1 | sed 's/ *<version>//g' | sed 's/<\/version>//g')
grep "<version>" ${PROJECT_ROOT}/pom.xml  | head -2 | tail -1 | sed 's/ *<version>//g' | sed 's/<\/version>//g'
++ grep '<version>' /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/scripts/../pom.xml
++ head -2
++ tail -1
++ sed 's/ *<version>//g'
++ sed 's/<\/version>//g'
+ VERSION=0.32.0-SNAPSHOT

# is the hadoop version set?
if ! [[ ${HADOOP_VERSION} ]];
then
    echo "HADOOP_VERSION environment variable is not set."
    echo "Please set this variable before running."
    
    exit 1
fi
+ [[ -n 2.7.5 ]]

# is the spark version set?
if ! [[ ${SPARK_VERSION} ]];
then
    echo "SPARK_VERSION environment variable is not set."
    echo "Please set this variable before running."
    
    exit 1
fi
+ [[ -n 2.4.5 ]]

set -e
+ set -e

# build defaults to Scala 2.11
if [ ${SCALAVER} == 2.11 ];
then
    # shouldn't be able to move to scala 2.11 twice
    set +e
    ./scripts/move_to_scala_2.11.sh
    if [[ $? == 0 ]];
    then
        echo "We have already moved to Scala 2.11, so running move_to_scala_2.11.sh a second time should fail, but error code was 0 (success)."
        exit 1
    fi
    set -e
fi
+ '[' 2.12 == 2.11 ']'

# move to Scala 2.12 if requested
if [ ${SCALAVER} == 2.12 ];
then
    set +e
    ./scripts/move_to_scala_2.12.sh
    set -e
fi
+ '[' 2.12 == 2.12 ']'
+ set +e
+ ./scripts/move_to_scala_2.12.sh
+ set -e

# print versions
echo "Testing ADAM version ${VERSION} on Spark ${SPARK_VERSION} and Hadoop ${HADOOP_VERSION}"
+ echo 'Testing ADAM version 0.32.0-SNAPSHOT on Spark 2.4.5 and Hadoop 2.7.5'
Testing ADAM version 0.32.0-SNAPSHOT on Spark 2.4.5 and Hadoop 2.7.5

# first, build the sources, run the unit tests, and generate a coverage report
mvn clean \
    -Dhadoop.version=${HADOOP_VERSION}
+ mvn clean -Dhadoop.version=2.7.5
Java HotSpot(TM) 64-Bit Server VM warning: ignoring option MaxPermSize=1g; support was removed in 8.0
[INFO] Scanning for projects...
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Build Order:
[INFO] 
[INFO] ADAM_2.12
[INFO] ADAM_2.12: Shader workaround
[INFO] ADAM_2.12: Avro-to-Dataset codegen utils
[INFO] ADAM_2.12: Core
[INFO] ADAM_2.12: APIs for Java, Python
[INFO] ADAM_2.12: CLI
[INFO] ADAM_2.12: Assembly
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ADAM_2.12 0.32.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ adam-parent-spark2_2.12 ---
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ADAM_2.12: Shader workaround 0.32.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ adam-shade-spark2_2.12 ---
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ADAM_2.12: Avro-to-Dataset codegen utils 0.32.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ adam-codegen-spark2_2.12 ---
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ADAM_2.12: Core 0.32.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ adam-core-spark2_2.12 ---
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ADAM_2.12: APIs for Java, Python 0.32.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ adam-apis-spark2_2.12 ---
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ADAM_2.12: CLI 0.32.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ adam-cli-spark2_2.12 ---
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ADAM_2.12: Assembly 0.32.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ adam-assembly-spark2_2.12 ---
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO] 
[INFO] ADAM_2.12 .......................................... SUCCESS [  0.203 s]
[INFO] ADAM_2.12: Shader workaround ....................... SUCCESS [  0.009 s]
[INFO] ADAM_2.12: Avro-to-Dataset codegen utils ........... SUCCESS [  0.008 s]
[INFO] ADAM_2.12: Core .................................... SUCCESS [  0.011 s]
[INFO] ADAM_2.12: APIs for Java, Python ................... SUCCESS [  0.002 s]
[INFO] ADAM_2.12: CLI ..................................... SUCCESS [  0.024 s]
[INFO] ADAM_2.12: Assembly ................................ SUCCESS [  0.001 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESS
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 0.476 s
[INFO] Finished at: 2020-03-09T09:47:49-07:00
[INFO] Final Memory: 22M/1472M
[INFO] ------------------------------------------------------------------------
    
# if this is a pull request, we need to set the coveralls pr id
if [[ ! -z $ghprbPullId ]];
then
    COVERALLS_PRB_OPTION="-DpullRequest=${ghprbPullId}"
fi
+ [[ ! -z 2255 ]]
+ COVERALLS_PRB_OPTION=-DpullRequest=2255

# coveralls token should not be visible
set +x +v
+ set +x +v
Java HotSpot(TM) 64-Bit Server VM warning: ignoring option MaxPermSize=1g; support was removed in 8.0
[INFO] Scanning for projects...
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Build Order:
[INFO] 
[INFO] ADAM_2.12
[INFO] ADAM_2.12: Shader workaround
[INFO] ADAM_2.12: Avro-to-Dataset codegen utils
[INFO] ADAM_2.12: Core
[INFO] ADAM_2.12: APIs for Java, Python
[INFO] ADAM_2.12: CLI
[INFO] ADAM_2.12: Assembly
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ADAM_2.12 0.32.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-parent-spark2_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-parent-spark2_2.12 ---
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-parent-spark2_2.12 ---
[INFO] Modified 0 of 241 .scala files
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-parent-spark2_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-parent-spark2_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] >>> scoverage-maven-plugin:1.1.1:report (default-cli) > [scoverage]test @ adam-parent-spark2_2.12 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-parent-spark2_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-parent-spark2_2.12 ---
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-parent-spark2_2.12 ---
[INFO] Modified 0 of 241 .scala files
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:pre-compile (default-cli) @ adam-parent-spark2_2.12 ---
[INFO] Skipping SCoverage execution for project with packaging type 'pom'
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-parent-spark2_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:post-compile (default-cli) @ adam-parent-spark2_2.12 ---
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-parent-spark2_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] <<< scoverage-maven-plugin:1.1.1:report (default-cli) < [scoverage]test @ adam-parent-spark2_2.12 <<<
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:report (default-cli) @ adam-parent-spark2_2.12 ---
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ADAM_2.12: Shader workaround 0.32.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-shade-spark2_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-shade-spark2_2.12 ---
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-shade-spark2_2.12 ---
[INFO] Modified 0 of 0 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-shade-spark2_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-shade/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-shade-spark2_2.12 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-shade/src/main/java:-1: info: compiling
[INFO] Compiling 1 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-shade/target/2.12.8/classes at 1583772481762
[INFO] prepare-compile in 0 s
[INFO] compile in 2 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-shade-spark2_2.12 ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 1 source file to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-shade/target/2.12.8/classes
[INFO] 
[INFO] --- plexus-component-metadata:1.5.5:generate-metadata (default) @ adam-shade-spark2_2.12 ---
[INFO] Discovered 1 component descriptors(s)
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-shade-spark2_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-shade/src/test/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-shade-spark2_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-shade-spark2_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-shade-spark2_2.12 ---
[INFO] No tests to run.
[INFO] 
[INFO] >>> scoverage-maven-plugin:1.1.1:report (default-cli) > [scoverage]test @ adam-shade-spark2_2.12 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-shade-spark2_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-shade-spark2_2.12 ---
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-shade-spark2_2.12 ---
[INFO] Modified 0 of 0 .scala files
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:pre-compile (default-cli) @ adam-shade-spark2_2.12 ---
[WARNING] Skipping SCoverage execution - unsupported Scala version "2.12.8"
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-shade-spark2_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-shade/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-shade-spark2_2.12 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-shade/src/main/java:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-shade/target/generated-sources/annotations:-1: info: compiling
[INFO] Compiling 1 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-shade/target/2.12.8/classes at 1583772485157
[INFO] prepare-compile in 0 s
[INFO] compile in 2 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-shade-spark2_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- plexus-component-metadata:1.5.5:generate-metadata (default) @ adam-shade-spark2_2.12 ---
[INFO] Discovered 1 component descriptors(s)
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:post-compile (default-cli) @ adam-shade-spark2_2.12 ---
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-shade-spark2_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-shade/src/test/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-shade-spark2_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-shade-spark2_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-shade-spark2_2.12 ---
[INFO] No tests to run.
[INFO] Skipping execution of surefire because it has already been run for this configuration
[INFO] 
[INFO] <<< scoverage-maven-plugin:1.1.1:report (default-cli) < [scoverage]test @ adam-shade-spark2_2.12 <<<
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:report (default-cli) @ adam-shade-spark2_2.12 ---
[INFO] Skipping SCoverage report generation
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ADAM_2.12: Avro-to-Dataset codegen utils 0.32.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-codegen-spark2_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-codegen-spark2_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-codegen-spark2_2.12 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-codegen/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-codegen-spark2_2.12 ---
[INFO] Modified 0 of 4 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-codegen-spark2_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-codegen/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-codegen-spark2_2.12 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-codegen/src/main/scala:-1: info: compiling
[INFO] Compiling 4 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-codegen/target/2.12.8/classes at 1583772487730
[WARNING] warning: there were 5 deprecation warnings (since 2.12.0); re-run with -deprecation for details
[WARNING] one warning found
[INFO] prepare-compile in 0 s
[INFO] compile in 4 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-codegen-spark2_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-codegen-spark2_2.12 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-codegen/src/test/scala added.
[INFO] 
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[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-codegen/src/test/resources
[INFO] 
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[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-codegen-spark2_2.12 ---
[INFO] No sources to compile
[INFO] 
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[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-codegen-spark2_2.12 ---
Discovery starting.
Discovery completed in 95 milliseconds.
Run starting. Expected test count is: 0
DiscoverySuite:
Run completed in 150 milliseconds.
Total number of tests run: 0
Suites: completed 1, aborted 0
Tests: succeeded 0, failed 0, canceled 0, ignored 0, pending 0
No tests were executed.
[INFO] 
[INFO] >>> scoverage-maven-plugin:1.1.1:report (default-cli) > [scoverage]test @ adam-codegen-spark2_2.12 >>>
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[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-codegen-spark2_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-codegen-spark2_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-codegen-spark2_2.12 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-codegen/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-codegen-spark2_2.12 ---
[INFO] Modified 0 of 4 .scala files
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:pre-compile (default-cli) @ adam-codegen-spark2_2.12 ---
[WARNING] Skipping SCoverage execution - unsupported Scala version "2.12.8"
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-codegen-spark2_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-codegen/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-codegen-spark2_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-codegen-spark2_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:post-compile (default-cli) @ adam-codegen-spark2_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-codegen-spark2_2.12 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-codegen/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-codegen-spark2_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-codegen/src/test/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-codegen-spark2_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-codegen-spark2_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-codegen-spark2_2.12 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-codegen-spark2_2.12 ---
Discovery starting.
Discovery completed in 95 milliseconds.
Run starting. Expected test count is: 0
DiscoverySuite:
Run completed in 144 milliseconds.
Total number of tests run: 0
Suites: completed 1, aborted 0
Tests: succeeded 0, failed 0, canceled 0, ignored 0, pending 0
No tests were executed.
[INFO] 
[INFO] <<< scoverage-maven-plugin:1.1.1:report (default-cli) < [scoverage]test @ adam-codegen-spark2_2.12 <<<
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:report (default-cli) @ adam-codegen-spark2_2.12 ---
[INFO] Skipping SCoverage report generation
[INFO]                                                                         
[INFO] ------------------------------------------------------------------------
[INFO] Building ADAM_2.12: Core 0.32.0-SNAPSHOT
[INFO] ------------------------------------------------------------------------
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[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-core-spark2_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-core-spark2_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-core-spark2_2.12 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-core/src/main/scala added.
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-core/target/generated-sources/src/main/scala added.
[INFO] 
[INFO] --- exec-maven-plugin:1.5.0:java (generate-scala-products) @ adam-core-spark2_2.12 ---
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] 
[INFO] --- exec-maven-plugin:1.5.0:java (generate-scala-projection-fields) @ adam-core-spark2_2.12 ---
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-core-spark2_2.12 ---
[INFO] Modified 2 of 203 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-core-spark2_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-core/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-core-spark2_2.12 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-core/src/main/java:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-core/src/main/scala:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-core/target/generated-sources/src/main/scala:-1: info: compiling
[INFO] Compiling 139 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-core/target/2.12.8/classes at 1583772505397
[ERROR] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/util/ADAMShell.scala:55: error: not found: type ASCIITableHeader
[ERROR]     new ASCIITableHeader("Reference Name"),
[ERROR]         ^
[ERROR] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/util/ADAMShell.scala:56: error: not found: type ASCIITableHeader
[ERROR]     new ASCIITableHeader("Start"),
[ERROR]         ^
[ERROR] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/util/ADAMShell.scala:57: error: not found: type ASCIITableHeader
[ERROR]     new ASCIITableHeader("End"),
[ERROR]         ^
[ERROR] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/util/ADAMShell.scala:58: error: not found: type ASCIITableHeader
[ERROR]     new ASCIITableHeader("Read Name"),
[ERROR]         ^
[ERROR] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/util/ADAMShell.scala:59: error: not found: type ASCIITableHeader
[ERROR]     new ASCIITableHeader("Sample"),
[ERROR]         ^
[ERROR] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/util/ADAMShell.scala:60: error: not found: type ASCIITableHeader
[ERROR]     new ASCIITableHeader("Read Group")
[ERROR]         ^
[ERROR] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/util/ADAMShell.scala:96: error: not found: type ASCIITable
[ERROR]     println("\nAlignment Attributes\n" + new ASCIITable(header, rows).toString)
[ERROR]                                              ^
[ERROR] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/util/ADAMShell.scala:101: error: not found: type ASCIITableHeader
[ERROR]     new ASCIITableHeader("Reference Name"),
[ERROR]         ^
[ERROR] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/util/ADAMShell.scala:102: error: not found: type ASCIITableHeader
[ERROR]     new ASCIITableHeader("Start"),
[ERROR]         ^
[ERROR] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/util/ADAMShell.scala:103: error: not found: type ASCIITableHeader
[ERROR]     new ASCIITableHeader("End"),
[ERROR]         ^
[ERROR] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/util/ADAMShell.scala:104: error: not found: type ASCIITableHeader
[ERROR]     new ASCIITableHeader("Strand"),
[ERROR]         ^
[ERROR] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/util/ADAMShell.scala:105: error: not found: type ASCIITableHeader
[ERROR]     new ASCIITableHeader("Name"),
[ERROR]         ^
[ERROR] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/util/ADAMShell.scala:106: error: not found: type ASCIITableHeader
[ERROR]     new ASCIITableHeader("Identifier"),
[ERROR]         ^
[ERROR] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/util/ADAMShell.scala:107: error: not found: type ASCIITableHeader
[ERROR]     new ASCIITableHeader("Type"),
[ERROR]         ^
[ERROR] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/util/ADAMShell.scala:108: error: not found: type ASCIITableHeader
[ERROR]     new ASCIITableHeader("Score")
[ERROR]         ^
[ERROR] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/util/ADAMShell.scala:142: error: not found: type ASCIITable
[ERROR]     println("\nFeature Attributes\n" + new ASCIITable(header, rows).toString)
[ERROR]                                            ^
[ERROR] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/util/ADAMShell.scala:158: error: not found: type ASCIITableHeader
[ERROR]     new ASCIITableHeader("Reference Name"),
[ERROR]         ^
[ERROR] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/util/ADAMShell.scala:159: error: not found: type ASCIITableHeader
[ERROR]     new ASCIITableHeader("Start"),
[ERROR]         ^
[ERROR] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/util/ADAMShell.scala:160: error: not found: type ASCIITableHeader
[ERROR]     new ASCIITableHeader("End"),
[ERROR]         ^
[ERROR] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/util/ADAMShell.scala:161: error: not found: type ASCIITableHeader
[ERROR]     new ASCIITableHeader("Ref", TextAlignment.Left),
[ERROR]         ^
[ERROR] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/util/ADAMShell.scala:162: error: not found: type ASCIITableHeader
[ERROR]     new ASCIITableHeader("Alt", TextAlignment.Left),
[ERROR]         ^
[ERROR] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/util/ADAMShell.scala:163: error: not found: type ASCIITableHeader
[ERROR]     new ASCIITableHeader("Alleles", TextAlignment.Center),
[ERROR]         ^
[ERROR] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/util/ADAMShell.scala:164: error: not found: type ASCIITableHeader
[ERROR]     new ASCIITableHeader("Sample")
[ERROR]         ^
[ERROR] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/util/ADAMShell.scala:190: error: not found: type ASCIITable
[ERROR]     println("\nGenotype Format Fields\n" + new ASCIITable(header, rows).toString)
[ERROR]                                                ^
[ERROR] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/util/ADAMShell.scala:232: error: not found: type ASCIITable
[ERROR]     println("\nGenotype Filters\n" + new ASCIITable(header, rows).toString)
[ERROR]                                          ^
[ERROR] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/util/ADAMShell.scala:237: error: not found: type ASCIITableHeader
[ERROR]     new ASCIITableHeader("Name"),
[ERROR]         ^
[ERROR] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/util/ADAMShell.scala:238: error: not found: type ASCIITableHeader
[ERROR]     new ASCIITableHeader("Description"),
[ERROR]         ^
[ERROR] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/util/ADAMShell.scala:239: error: not found: type ASCIITableHeader
[ERROR]     new ASCIITableHeader("Alphabet"),
[ERROR]         ^
[ERROR] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/util/ADAMShell.scala:240: error: not found: type ASCIITableHeader
[ERROR]     new ASCIITableHeader("Length")
[ERROR]         ^
[ERROR] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/util/ADAMShell.scala:270: error: not found: type ASCIITable
[ERROR]     println("\nRead Attributes\n" + new ASCIITable(header, rows).toString)
[ERROR]                                         ^
[ERROR] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/util/ADAMShell.scala:281: error: not found: type ASCIITableHeader
[ERROR]       new ASCIITableHeader("Identifier"),
[ERROR]           ^
[ERROR] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/util/ADAMShell.scala:282: error: not found: type ASCIITableHeader
[ERROR]       new ASCIITableHeader("Name")
[ERROR]           ^
[ERROR] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/util/ADAMShell.scala:283: error: not found: type ASCIITableHeader
[ERROR]     ) ++ keys.map(key => new ASCIITableHeader(key)) ++ Array(new ASCIITableHeader("Processing Steps"))
[ERROR]                              ^
[ERROR] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/util/ADAMShell.scala:283: error: not found: type ASCIITableHeader
[ERROR]     ) ++ keys.map(key => new ASCIITableHeader(key)) ++ Array(new ASCIITableHeader("Processing Steps"))
[ERROR]                                                                  ^
[ERROR] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/util/ADAMShell.scala:290: error: not found: type ASCIITable
[ERROR]     println("\nSample Attributes\n" + new ASCIITable(header, rows).toString)
[ERROR]                                           ^
[ERROR] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/util/ADAMShell.scala:295: error: not found: type ASCIITableHeader
[ERROR]     new ASCIITableHeader("Name"),
[ERROR]         ^
[ERROR] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/util/ADAMShell.scala:296: error: not found: type ASCIITableHeader
[ERROR]     new ASCIITableHeader("Description"),
[ERROR]         ^
[ERROR] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/util/ADAMShell.scala:297: error: not found: type ASCIITableHeader
[ERROR]     new ASCIITableHeader("Alphabet"),
[ERROR]         ^
[ERROR] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/util/ADAMShell.scala:298: error: not found: type ASCIITableHeader
[ERROR]     new ASCIITableHeader("Length")
[ERROR]         ^
[ERROR] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/util/ADAMShell.scala:328: error: not found: type ASCIITable
[ERROR]     println("\nSequence Attributes\n" + new ASCIITable(header, rows).toString)
[ERROR]                                             ^
[ERROR] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/util/ADAMShell.scala:333: error: not found: type ASCIITableHeader
[ERROR]     new ASCIITableHeader("Name"),
[ERROR]         ^
[ERROR] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/util/ADAMShell.scala:334: error: not found: type ASCIITableHeader
[ERROR]     new ASCIITableHeader("Description"),
[ERROR]         ^
[ERROR] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/util/ADAMShell.scala:335: error: not found: type ASCIITableHeader
[ERROR]     new ASCIITableHeader("Alphabet"),
[ERROR]         ^
[ERROR] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/util/ADAMShell.scala:336: error: not found: type ASCIITableHeader
[ERROR]     new ASCIITableHeader("Start"),
[ERROR]         ^
[ERROR] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/util/ADAMShell.scala:337: error: not found: type ASCIITableHeader
[ERROR]     new ASCIITableHeader("End"),
[ERROR]         ^
[ERROR] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/util/ADAMShell.scala:338: error: not found: type ASCIITableHeader
[ERROR]     new ASCIITableHeader("Strand"),
[ERROR]         ^
[ERROR] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/util/ADAMShell.scala:339: error: not found: type ASCIITableHeader
[ERROR]     new ASCIITableHeader("Length"),
[ERROR]         ^
[ERROR] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/util/ADAMShell.scala:340: error: not found: type ASCIITableHeader
[ERROR]     new ASCIITableHeader("Total length"),
[ERROR]         ^
[ERROR] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/util/ADAMShell.scala:341: error: not found: type ASCIITableHeader
[ERROR]     new ASCIITableHeader("Index"),
[ERROR]         ^
[ERROR] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/util/ADAMShell.scala:342: error: not found: type ASCIITableHeader
[ERROR]     new ASCIITableHeader("Slices")
[ERROR]         ^
[ERROR] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/util/ADAMShell.scala:378: error: not found: type ASCIITable
[ERROR]     println("\nSlice Attributes\n" + new ASCIITable(header, rows).toString)
[ERROR]                                          ^
[ERROR] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/util/ADAMShell.scala:393: error: not found: type ASCIITableHeader
[ERROR]     new ASCIITableHeader("Reference Name"),
[ERROR]         ^
[ERROR] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/util/ADAMShell.scala:394: error: not found: type ASCIITableHeader
[ERROR]     new ASCIITableHeader("Start"),
[ERROR]         ^
[ERROR] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/util/ADAMShell.scala:395: error: not found: type ASCIITableHeader
[ERROR]     new ASCIITableHeader("End"),
[ERROR]         ^
[ERROR] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/util/ADAMShell.scala:396: error: not found: type ASCIITableHeader
[ERROR]     new ASCIITableHeader("Ref", TextAlignment.Left),
[ERROR]         ^
[ERROR] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/util/ADAMShell.scala:397: error: not found: type ASCIITableHeader
[ERROR]     new ASCIITableHeader("Alt", TextAlignment.Left)
[ERROR]         ^
[ERROR] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/util/ADAMShell.scala:427: error: not found: type ASCIITable
[ERROR]     println("\nVariant Filters\n" + new ASCIITable(header, rows).toString)
[ERROR]                                         ^
[ERROR] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALAVER/2.12/SPARK_VERSION/2.4.5/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/util/ADAMShell.scala:462: error: not found: type ASCIITable
[ERROR]     println("\nVariant Info Fields\n" + new ASCIITable(header, rows).toString)
[ERROR]                                             ^
[ERROR] 58 errors found
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary:
[INFO] 
[INFO] ADAM_2.12 .......................................... SUCCESS [  9.910 s]
[INFO] ADAM_2.12: Shader workaround ....................... SUCCESS [  6.575 s]
[INFO] ADAM_2.12: Avro-to-Dataset codegen utils ........... SUCCESS [  7.116 s]
[INFO] ADAM_2.12: Core .................................... FAILURE [ 24.805 s]
[INFO] ADAM_2.12: APIs for Java, Python ................... SKIPPED
[INFO] ADAM_2.12: CLI ..................................... SKIPPED
[INFO] ADAM_2.12: Assembly ................................ SKIPPED
[INFO] ------------------------------------------------------------------------
[INFO] BUILD FAILURE
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 48.717 s
[INFO] Finished at: 2020-03-09T09:48:39-07:00
[INFO] Final Memory: 48M/1508M
[INFO] ------------------------------------------------------------------------
[ERROR] Failed to execute goal net.alchim31.maven:scala-maven-plugin:3.2.2:compile (scala-compile-first) on project adam-core-spark2_2.12: wrap: org.apache.commons.exec.ExecuteException: Process exited with an error: 1 (Exit value: 1) -> [Help 1]
[ERROR] 
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR] 
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/MojoExecutionException
[ERROR] 
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR]   mvn <goals> -rf :adam-core-spark2_2.12
Build step 'Execute shell' marked build as failure
Recording test results
Publishing Scoverage XML and HTML report...
null
Setting commit status on GitHub for https://github.com/bigdatagenomics/adam/commit/a22048c1fec9ce21d390188a350d1f98b0a505b3
Finished: FAILURE