bin quality scores in fragments | 1.2 sec | Passed |
dataset and rdd conversion to alignments are equivalent | 0.74 sec | Passed |
don't lose any reads when piping interleaved fastq to sam | 0.68 sec | Passed |
don't lose any reads when piping tab5 to sam | 0.22 sec | Passed |
don't lose any reads when piping tab6 to sam | 0.26 sec | Passed |
interleaved paired read names with index sequences in read names as fragments | 0.21 sec | Passed |
interleaved paired read names with index sequences in read names can group into fragments | 0.36 sec | Passed |
load parquet to sql, save, re-read from avro | 2.6 sec | Passed |
paired read names with index sequences in read names can group into fragments | 0.46 sec | Passed |
transform dataset via java API | 0.69 sec | Passed |
transform fragments to coverage genomic dataset | 1 sec | Passed |
transform fragments to feature genomic dataset | 0.97 sec | Passed |
transform fragments to genotype genomic dataset | 1.5 sec | Passed |
transform fragments to read genomic dataset | 1 sec | Passed |
transform fragments to slice genomic dataset | 1.4 sec | Passed |
transform fragments to variant context genomic dataset | 0.29 sec | Passed |
transform fragments to variant genomic dataset | 1.2 sec | Passed |
union two genomic datasets of fragments together | 0.79 sec | Passed |
use broadcast join to pull down fragments mapped to targets | 0.51 sec | Passed |
use full outer shuffle join to pull down fragments mapped to targets | 1.3 sec | Passed |
use left outer shuffle join to pull down fragments mapped to targets | 1.3 sec | Passed |
use right outer broadcast join to pull down fragments mapped to targets | 0.58 sec | Passed |
use right outer shuffle join to pull down fragments mapped to targets | 1.2 sec | Passed |
use right outer shuffle join with group by to pull down fragments mapped to targets | 1.2 sec | Passed |
use shuffle join to pull down fragments mapped to targets | 1.4 sec | Passed |
use shuffle join with group by to pull down fragments mapped to targets | 1.3 sec | Passed |