Test Result : FragmentDatasetSuite

0 failures (±0)

26 tests (±0)

Took 25 sec.

All Tests

Test name	Duration	Status
bin quality scores in fragments	1.2 sec	Passed
dataset and rdd conversion to alignments are equivalent	0.74 sec	Passed
don't lose any reads when piping interleaved fastq to sam	0.68 sec	Passed
don't lose any reads when piping tab5 to sam	0.22 sec	Passed
don't lose any reads when piping tab6 to sam	0.26 sec	Passed
interleaved paired read names with index sequences in read names as fragments	0.21 sec	Passed
interleaved paired read names with index sequences in read names can group into fragments	0.36 sec	Passed
load parquet to sql, save, re-read from avro	2.6 sec	Passed
paired read names with index sequences in read names can group into fragments	0.46 sec	Passed
transform dataset via java API	0.69 sec	Passed
transform fragments to coverage genomic dataset	1 sec	Passed
transform fragments to feature genomic dataset	0.97 sec	Passed
transform fragments to genotype genomic dataset	1.5 sec	Passed
transform fragments to read genomic dataset	1 sec	Passed
transform fragments to slice genomic dataset	1.4 sec	Passed
transform fragments to variant context genomic dataset	0.29 sec	Passed
transform fragments to variant genomic dataset	1.2 sec	Passed
union two genomic datasets of fragments together	0.79 sec	Passed
use broadcast join to pull down fragments mapped to targets	0.51 sec	Passed
use full outer shuffle join to pull down fragments mapped to targets	1.3 sec	Passed
use left outer shuffle join to pull down fragments mapped to targets	1.3 sec	Passed
use right outer broadcast join to pull down fragments mapped to targets	0.58 sec	Passed
use right outer shuffle join to pull down fragments mapped to targets	1.2 sec	Passed
use right outer shuffle join with group by to pull down fragments mapped to targets	1.2 sec	Passed
use shuffle join to pull down fragments mapped to targets	1.4 sec	Passed
use shuffle join with group by to pull down fragments mapped to targets	1.3 sec	Passed