Console Output

Started by upstream project "ADAM-prb" build number 3116
originally caused by:
 GitHub pull request #2268 of commit 87a72eabeab7095ac6022bd16ccce13d49823060 automatically merged.
[EnvInject] - Loading node environment variables.
Building remotely on research-jenkins-worker-09 (ubuntu ubuntu-gpu research-09 ubuntu-avx2) in workspace /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu
Wiping out workspace first.
Cloning the remote Git repository
Cloning repository https://github.com/bigdatagenomics/adam.git
 > git init /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu # timeout=10
Fetching upstream changes from https://github.com/bigdatagenomics/adam.git
 > git --version # timeout=10
 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/heads/*:refs/remotes/origin/* # timeout=15
 > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10
 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10
 > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10
Fetching upstream changes from https://github.com/bigdatagenomics/adam.git
 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/*:refs/remotes/origin/pr/* # timeout=15
Checking out Revision c6bb17b6226bc9c055493d4cca7f99182e45fe42 (origin/pr/2268/merge)
 > git config core.sparsecheckout # timeout=10
 > git checkout -f c6bb17b6226bc9c055493d4cca7f99182e45fe42
 > git rev-list e784e3f9c54a2759017edf39e0e26a2e7c346470 # timeout=10
First time build. Skipping changelog.
[ubuntu] $ /bin/bash /tmp/hudson2303394509926723739.sh
+ set -e
+ unset SPARK_TESTING
+ export JAVA_HOME=/usr/lib/jvm/java-8-oracle
+ JAVA_HOME=/usr/lib/jvm/java-8-oracle
+ export CONDA_BIN=/home/anaconda/bin/
+ CONDA_BIN=/home/anaconda/bin/
+ export PATH=/usr/lib/jvm/java-8-oracle/bin/:/home/anaconda/bin/:/home/jenkins/tools/hudson.tasks.Maven_MavenInstallation/Maven_3.6.3/bin/:/home/jenkins/gems/bin:/usr/local/go/bin:/home/jenkins/go-projects/bin:/home/jenkins/anaconda2/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games
+ PATH=/usr/lib/jvm/java-8-oracle/bin/:/home/anaconda/bin/:/home/jenkins/tools/hudson.tasks.Maven_MavenInstallation/Maven_3.6.3/bin/:/home/jenkins/gems/bin:/usr/local/go/bin:/home/jenkins/go-projects/bin:/home/jenkins/anaconda2/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games
+ set +x
+ /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/scripts/jenkins-test

# make a tempdir for writing maven cruft to
ADAM_MVN_TMP_DIR=$(mktemp -d -t adamTestMvnXXXXXXX)
mktemp -d -t adamTestMvnXXXXXXX
++ mktemp -d -t adamTestMvnXXXXXXX
+ ADAM_MVN_TMP_DIR=/tmp/adamTestMvn1aEve53

# add this tempdir to the poms...
find . -name pom.xml \
    -exec sed -i.bak \
    -e "s:sun.io.serialization.extendedDebugInfo=true:sun.io.serialization.extendedDebugInfo=true -Djava.io.tmpdir=${ADAM_MVN_TMP_DIR}:g" \
    {} \;
+ find . -name pom.xml -exec sed -i.bak -e 's:sun.io.serialization.extendedDebugInfo=true:sun.io.serialization.extendedDebugInfo=true -Djava.io.tmpdir=/tmp/adamTestMvn1aEve53:g' '{}' ';'
find . -name "*.bak" -exec rm -f {} \;
+ find . -name '*.bak' -exec rm -f '{}' ';'

# variable declarations
export PATH=${JAVA_HOME}/bin/:${PATH}
+ export PATH=/usr/lib/jvm/java-8-oracle/bin/:/usr/lib/jvm/java-8-oracle/bin/:/home/anaconda/bin/:/home/jenkins/tools/hudson.tasks.Maven_MavenInstallation/Maven_3.6.3/bin/:/home/jenkins/gems/bin:/usr/local/go/bin:/home/jenkins/go-projects/bin:/home/jenkins/anaconda2/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games
+ PATH=/usr/lib/jvm/java-8-oracle/bin/:/usr/lib/jvm/java-8-oracle/bin/:/home/anaconda/bin/:/home/jenkins/tools/hudson.tasks.Maven_MavenInstallation/Maven_3.6.3/bin/:/home/jenkins/gems/bin:/usr/local/go/bin:/home/jenkins/go-projects/bin:/home/jenkins/anaconda2/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games
export MAVEN_OPTS="-Xmx1536m -XX:MaxPermSize=1g -Dfile.encoding=utf-8"
+ export 'MAVEN_OPTS=-Xmx1536m -XX:MaxPermSize=1g -Dfile.encoding=utf-8'
+ MAVEN_OPTS='-Xmx1536m -XX:MaxPermSize=1g -Dfile.encoding=utf-8'
DIR=$( cd $( dirname ${BASH_SOURCE[0]} ) && pwd )
 cd $( dirname ${BASH_SOURCE[0]} ) && pwd 
 dirname ${BASH_SOURCE[0]} 
+++ dirname /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/scripts/jenkins-test
++ cd /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/scripts
++ pwd
+ DIR=/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/scripts
PROJECT_ROOT=${DIR}/..
+ PROJECT_ROOT=/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/scripts/..
VERSION=$(grep "<version>" ${PROJECT_ROOT}/pom.xml  | head -2 | tail -1 | sed 's/ *<version>//g' | sed 's/<\/version>//g')
grep "<version>" ${PROJECT_ROOT}/pom.xml  | head -2 | tail -1 | sed 's/ *<version>//g' | sed 's/<\/version>//g'
++ grep '<version>' /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/scripts/../pom.xml
++ head -2
++ tail -1
++ sed 's/ *<version>//g'
++ sed 's/<\/version>//g'
+ VERSION=0.33.0-SNAPSHOT

# is the hadoop version set?
if ! [[ ${HADOOP_VERSION} ]];
then
    echo "HADOOP_VERSION environment variable is not set."
    echo "Please set this variable before running."
    
    exit 1
fi
+ [[ -n 2.7.5 ]]

# is the spark version set?
if ! [[ ${SPARK_VERSION} ]];
then
    echo "SPARK_VERSION environment variable is not set."
    echo "Please set this variable before running."
    
    exit 1
fi
+ [[ -n 3.0.0 ]]

set -e
+ set -e

# move to Scala 2.11 if requested
if [ ${SCALA_VERSION} == 2.11 ];
then
    set +e
    ./scripts/move_to_scala_2.11.sh
    set -e
fi
+ '[' 2.12 == 2.11 ']'

# move to Scala 2.12 if requested
if [ ${SCALA_VERSION} == 2.12 ];
then
    set +e
    ./scripts/move_to_scala_2.12.sh
    set -e
fi
+ '[' 2.12 == 2.12 ']'
+ set +e
+ ./scripts/move_to_scala_2.12.sh
Scala version is already set to 2.12 (Scala artifacts have _2.12 version suffix in artifact name).
Cowardly refusing to move to Scala 2.12 a second time...
+ set -e

# move to Spark 2.x if requested
if [ ${SPARK_VERSION} == 2.4.6 ];
then
    set +e
    ./scripts/move_to_spark_2.sh
    set -e
fi
+ '[' 3.0.0 == 2.4.6 ']'

# move to Spark 3.x if requested
if [ ${SPARK_VERSION} == 3.0.0 ];
then
    set +e
    ./scripts/move_to_spark_3.sh
    set -e
fi
+ '[' 3.0.0 == 3.0.0 ']'
+ set +e
+ ./scripts/move_to_spark_3.sh
POM is already set up for Spark 3 (Spark 3 artifacts have -spark3 suffix in artifact names).
Cowardly refusing to move to Spark 3 a second time...
+ set -e

# print versions
echo "Testing ADAM version ${VERSION} on Spark ${SPARK_VERSION} and Hadoop ${HADOOP_VERSION}"
+ echo 'Testing ADAM version 0.33.0-SNAPSHOT on Spark 3.0.0 and Hadoop 2.7.5'
Testing ADAM version 0.33.0-SNAPSHOT on Spark 3.0.0 and Hadoop 2.7.5

# first, build the sources, run the unit tests, and generate a coverage report
mvn clean \
    -Dhadoop.version=${HADOOP_VERSION}
+ mvn clean -Dhadoop.version=2.7.5
OpenJDK 64-Bit Server VM warning: ignoring option MaxPermSize=1g; support was removed in 8.0
[INFO] Scanning for projects...
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Build Order:
[INFO] 
[INFO] ADAM_2.12                                                          [pom]
[INFO] ADAM_2.12: Shader workaround                                       [jar]
[INFO] ADAM_2.12: Avro-to-Dataset codegen utils                           [jar]
[INFO] ADAM_2.12: Core                                                    [jar]
[INFO] ADAM_2.12: APIs for Java, Python                                   [jar]
[INFO] ADAM_2.12: CLI                                                     [jar]
[INFO] ADAM_2.12: Assembly                                                [jar]
[INFO] 
[INFO] ------------< org.bdgenomics.adam:adam-parent-spark3_2.12 >-------------
[INFO] Building ADAM_2.12 0.33.0-SNAPSHOT                                 [1/7]
[INFO] --------------------------------[ pom ]---------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ adam-parent-spark3_2.12 ---
[INFO] 
[INFO] -------------< org.bdgenomics.adam:adam-shade-spark3_2.12 >-------------
[INFO] Building ADAM_2.12: Shader workaround 0.33.0-SNAPSHOT              [2/7]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ adam-shade-spark3_2.12 ---
[INFO] 
[INFO] ------------< org.bdgenomics.adam:adam-codegen-spark3_2.12 >------------
[INFO] Building ADAM_2.12: Avro-to-Dataset codegen utils 0.33.0-SNAPSHOT  [3/7]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ adam-codegen-spark3_2.12 ---
[INFO] 
[INFO] -------------< org.bdgenomics.adam:adam-core-spark3_2.12 >--------------
[INFO] Building ADAM_2.12: Core 0.33.0-SNAPSHOT                           [4/7]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ adam-core-spark3_2.12 ---
[INFO] 
[INFO] -------------< org.bdgenomics.adam:adam-apis-spark3_2.12 >--------------
[INFO] Building ADAM_2.12: APIs for Java, Python 0.33.0-SNAPSHOT          [5/7]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ adam-apis-spark3_2.12 ---
[INFO] 
[INFO] --------------< org.bdgenomics.adam:adam-cli-spark3_2.12 >--------------
[INFO] Building ADAM_2.12: CLI 0.33.0-SNAPSHOT                            [6/7]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ adam-cli-spark3_2.12 ---
[INFO] 
[INFO] -----------< org.bdgenomics.adam:adam-assembly-spark3_2.12 >------------
[INFO] Building ADAM_2.12: Assembly 0.33.0-SNAPSHOT                       [7/7]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ adam-assembly-spark3_2.12 ---
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary for ADAM_2.12 0.33.0-SNAPSHOT:
[INFO] 
[INFO] ADAM_2.12 .......................................... SUCCESS [  0.222 s]
[INFO] ADAM_2.12: Shader workaround ....................... SUCCESS [  0.009 s]
[INFO] ADAM_2.12: Avro-to-Dataset codegen utils ........... SUCCESS [  0.008 s]
[INFO] ADAM_2.12: Core .................................... SUCCESS [  0.012 s]
[INFO] ADAM_2.12: APIs for Java, Python ................... SUCCESS [  0.002 s]
[INFO] ADAM_2.12: CLI ..................................... SUCCESS [  0.025 s]
[INFO] ADAM_2.12: Assembly ................................ SUCCESS [  0.004 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESS
[INFO] ------------------------------------------------------------------------
[INFO] Total time:  0.513 s
[INFO] Finished at: 2020-08-06T17:06:08-07:00
[INFO] ------------------------------------------------------------------------
    
# if this is a pull request, we need to set the coveralls pr id
if [[ ! -z $ghprbPullId ]];
then
    COVERALLS_PRB_OPTION="-DpullRequest=${ghprbPullId}"
fi
+ [[ ! -z 2268 ]]
+ COVERALLS_PRB_OPTION=-DpullRequest=2268

# coveralls token should not be visible
set +x +v
+ set +x +v
OpenJDK 64-Bit Server VM warning: ignoring option MaxPermSize=1g; support was removed in 8.0
[INFO] Scanning for projects...
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Build Order:
[INFO] 
[INFO] ADAM_2.12                                                          [pom]
[INFO] ADAM_2.12: Shader workaround                                       [jar]
[INFO] ADAM_2.12: Avro-to-Dataset codegen utils                           [jar]
[INFO] ADAM_2.12: Core                                                    [jar]
[INFO] ADAM_2.12: APIs for Java, Python                                   [jar]
[INFO] ADAM_2.12: CLI                                                     [jar]
[INFO] ADAM_2.12: Assembly                                                [jar]
[INFO] 
[INFO] ------------< org.bdgenomics.adam:adam-parent-spark3_2.12 >-------------
[INFO] Building ADAM_2.12 0.33.0-SNAPSHOT                                 [1/7]
[INFO] --------------------------------[ pom ]---------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-parent-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-parent-spark3_2.12 ---
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-parent-spark3_2.12 ---
[INFO] Modified 0 of 242 .scala files
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-parent-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-parent-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] >>> scoverage-maven-plugin:1.1.1:report (default-cli) > [scoverage]test @ adam-parent-spark3_2.12 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-parent-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-parent-spark3_2.12 ---
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-parent-spark3_2.12 ---
[INFO] Modified 0 of 242 .scala files
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:pre-compile (default-cli) @ adam-parent-spark3_2.12 ---
[INFO] Skipping SCoverage execution for project with packaging type 'pom'
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-parent-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:post-compile (default-cli) @ adam-parent-spark3_2.12 ---
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-parent-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] <<< scoverage-maven-plugin:1.1.1:report (default-cli) < [scoverage]test @ adam-parent-spark3_2.12 <<<
[INFO] 
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:report (default-cli) @ adam-parent-spark3_2.12 ---
[INFO] 
[INFO] -------------< org.bdgenomics.adam:adam-shade-spark3_2.12 >-------------
[INFO] Building ADAM_2.12: Shader workaround 0.33.0-SNAPSHOT              [2/7]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-shade-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-shade-spark3_2.12 ---
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-shade-spark3_2.12 ---
[INFO] Modified 0 of 0 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-shade-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-shade/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-shade-spark3_2.12 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-shade/src/main/java:-1: info: compiling
[INFO] Compiling 1 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-shade/target/2.12.8/classes at 1596758781585
[INFO] prepare-compile in 0 s
[INFO] compile in 2 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-shade-spark3_2.12 ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 1 source file to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-shade/target/2.12.8/classes
[INFO] 
[INFO] --- plexus-component-metadata:1.5.5:generate-metadata (default) @ adam-shade-spark3_2.12 ---
[INFO] Discovered 1 component descriptors(s)
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-shade-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-shade/src/test/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-shade-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-shade-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-shade-spark3_2.12 ---
[INFO] No tests to run.
[INFO] 
[INFO] >>> scoverage-maven-plugin:1.1.1:report (default-cli) > [scoverage]test @ adam-shade-spark3_2.12 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-shade-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-shade-spark3_2.12 ---
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-shade-spark3_2.12 ---
[INFO] Modified 0 of 0 .scala files
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:pre-compile (default-cli) @ adam-shade-spark3_2.12 ---
[WARNING] Skipping SCoverage execution - unsupported Scala version "2.12.8"
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-shade-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-shade/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-shade-spark3_2.12 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-shade/src/main/java:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-shade/target/generated-sources/annotations:-1: info: compiling
[INFO] Compiling 1 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-shade/target/2.12.8/classes at 1596758784979
[INFO] prepare-compile in 0 s
[INFO] compile in 2 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-shade-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- plexus-component-metadata:1.5.5:generate-metadata (default) @ adam-shade-spark3_2.12 ---
[INFO] Discovered 1 component descriptors(s)
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:post-compile (default-cli) @ adam-shade-spark3_2.12 ---
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-shade-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-shade/src/test/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-shade-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-shade-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-shade-spark3_2.12 ---
[INFO] No tests to run.
[INFO] Skipping execution of surefire because it has already been run for this configuration
[INFO] 
[INFO] <<< scoverage-maven-plugin:1.1.1:report (default-cli) < [scoverage]test @ adam-shade-spark3_2.12 <<<
[INFO] 
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:report (default-cli) @ adam-shade-spark3_2.12 ---
[INFO] Skipping SCoverage report generation
[INFO] 
[INFO] ------------< org.bdgenomics.adam:adam-codegen-spark3_2.12 >------------
[INFO] Building ADAM_2.12: Avro-to-Dataset codegen utils 0.33.0-SNAPSHOT  [3/7]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-codegen-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-codegen-spark3_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-codegen-spark3_2.12 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-codegen/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-codegen-spark3_2.12 ---
[INFO] Modified 0 of 4 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-codegen-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-codegen/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-codegen-spark3_2.12 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-codegen/src/main/scala:-1: info: compiling
[INFO] Compiling 4 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-codegen/target/2.12.8/classes at 1596758787395
[WARNING] warning: there were 5 deprecation warnings (since 2.12.0); re-run with -deprecation for details
[WARNING] one warning found
[INFO] prepare-compile in 0 s
[INFO] compile in 4 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-codegen-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-codegen-spark3_2.12 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-codegen/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-codegen-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-codegen/src/test/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-codegen-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-codegen-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-codegen-spark3_2.12 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-codegen-spark3_2.12 ---
Discovery starting.
Discovery completed in 82 milliseconds.
Run starting. Expected test count is: 0
DiscoverySuite:
Run completed in 125 milliseconds.
Total number of tests run: 0
Suites: completed 1, aborted 0
Tests: succeeded 0, failed 0, canceled 0, ignored 0, pending 0
No tests were executed.
[INFO] 
[INFO] >>> scoverage-maven-plugin:1.1.1:report (default-cli) > [scoverage]test @ adam-codegen-spark3_2.12 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-codegen-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-codegen-spark3_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-codegen-spark3_2.12 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-codegen/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-codegen-spark3_2.12 ---
[INFO] Modified 0 of 4 .scala files
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:pre-compile (default-cli) @ adam-codegen-spark3_2.12 ---
[WARNING] Skipping SCoverage execution - unsupported Scala version "2.12.8"
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-codegen-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-codegen/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-codegen-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-codegen-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:post-compile (default-cli) @ adam-codegen-spark3_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-codegen-spark3_2.12 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-codegen/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-codegen-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-codegen/src/test/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-codegen-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-codegen-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-codegen-spark3_2.12 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-codegen-spark3_2.12 ---
Discovery starting.
Discovery completed in 77 milliseconds.
Run starting. Expected test count is: 0
DiscoverySuite:
Run completed in 119 milliseconds.
Total number of tests run: 0
Suites: completed 1, aborted 0
Tests: succeeded 0, failed 0, canceled 0, ignored 0, pending 0
No tests were executed.
[INFO] 
[INFO] <<< scoverage-maven-plugin:1.1.1:report (default-cli) < [scoverage]test @ adam-codegen-spark3_2.12 <<<
[INFO] 
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:report (default-cli) @ adam-codegen-spark3_2.12 ---
[INFO] Skipping SCoverage report generation
[INFO] 
[INFO] -------------< org.bdgenomics.adam:adam-core-spark3_2.12 >--------------
[INFO] Building ADAM_2.12: Core 0.33.0-SNAPSHOT                           [4/7]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-core-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-core-spark3_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-core-spark3_2.12 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/main/scala added.
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/generated-sources/src/main/scala added.
[INFO] 
[INFO] --- exec-maven-plugin:1.5.0:java (generate-scala-products) @ adam-core-spark3_2.12 ---
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] 
[INFO] --- exec-maven-plugin:1.5.0:java (generate-scala-projection-fields) @ adam-core-spark3_2.12 ---
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-core-spark3_2.12 ---
[INFO] Modified 2 of 204 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-core-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-core-spark3_2.12 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/main/java:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/main/scala:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/generated-sources/src/main/scala:-1: info: compiling
[INFO] Compiling 140 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/2.12.8/classes at 1596758800438
[WARNING] warning: there were 21 deprecation warnings
[WARNING] warning: there were 31 deprecation warnings (since 0.21.0)
[WARNING] warning: there was one deprecation warning (since 1.0.6)
[WARNING] warning: there was one deprecation warning (since 2.11.0)
[WARNING] warning: there were 175 deprecation warnings (since 2.12.0)
[WARNING] warning: there was one deprecation warning (since 2.12.7)
[WARNING] warning: there were 230 deprecation warnings in total; re-run with -deprecation for details
[WARNING] warning: there were 5 feature warnings; re-run with -feature for details
[WARNING] 8 warnings found
[INFO] prepare-compile in 0 s
[INFO] compile in 26 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-core-spark3_2.12 ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 6 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/2.12.8/classes
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-core-spark3_2.12 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-core-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 152 resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-core-spark3_2.12 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala:-1: info: compiling
[INFO] Compiling 70 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/2.12.8/test-classes at 1596758827964
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/algorithms/consensus/NormalizationUtilsSuite.scala:59: warning: method recordToRichRecord in object RichAlignment is deprecated (since 0.21.0): Use explicit conversion wherever possible in new development.
[WARNING]       .build()
[WARNING]             ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/algorithms/consensus/NormalizationUtilsSuite.scala:61: warning: method richRecordToRecord in object RichAlignment is deprecated (since 0.21.0): Use explicit conversion wherever possible in new development.
[WARNING]     val new_cigar = NormalizationUtils.leftAlignIndel(read)
[WARNING]                                                       ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/algorithms/consensus/NormalizationUtilsSuite.scala:66: warning: method richRecordToRecord in object RichAlignment is deprecated (since 0.21.0): Use explicit conversion wherever possible in new development.
[WARNING]     assert(RichAlignment(read).samtoolsCigar.getReadLength === new_cigar.getReadLength)
[WARNING]                          ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/AlignmentConverterSuite.scala:171: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     val newSAMRecord = newSAMReader.iterator().dropWhile(r => r.getReadName != readName)
[WARNING]                                             ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/AlignmentConverterSuite.scala:274: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       .setAlignments(seqAsJavaList(alignments))
[WARNING]                      ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/AlignmentConverterSuite.scala:311: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       .setAlignments(seqAsJavaList(alignments))
[WARNING]                      ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/AlignmentConverterSuite.scala:335: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     val fragment = Fragment.newBuilder().setAlignments(List(record)).build()
[WARNING]                                                            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/SAMRecordConverterSuite.scala:54: warning: method getNotPrimaryAlignmentFlag in class SAMRecord is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(!testAlignment.getPrimaryAlignment === testSAMRecord.getNotPrimaryAlignmentFlag)
[WARNING]                                                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/SAMRecordConverterSuite.scala:89: warning: method getNotPrimaryAlignmentFlag in class SAMRecord is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(!testAlignment.getPrimaryAlignment === testSAMRecord.getNotPrimaryAlignmentFlag)
[WARNING]                                                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/SAMRecordConverterSuite.scala:106: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       val samIter = asScalaIterator(newSAMReader.iterator())
[WARNING]                     ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:53: warning: method extractDictionary in class SAMSequenceDictionaryExtractor is deprecated: see corresponding Javadoc for more information.
[WARNING]     SequenceDictionary(SAMSequenceDictionaryExtractor.extractDictionary(new File(path)))
[WARNING]                                                       ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:63: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     .alleles(List(Allele.create("A", true), Allele.create("T")))
[WARNING]                  ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:69: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     .alleles(List(Allele.create("A", true), Allele.create("T"), Allele.create("G")))
[WARNING]                  ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:75: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     .alleles(List(Allele.create("A", true), Allele.create("<NON_REF>", false)))
[WARNING]                  ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:81: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     .alleles(List(Allele.create("A", true), Allele.create("<CN0>", false)))
[WARNING]                  ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:109: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       .alleles(List(Allele.create("A", true), Allele.create("T")))
[WARNING]                    ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:143: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       GenotypeBuilder.create("NA12878", vcb.getAlleles(), genotypeAttributes))
[WARNING]                                                           ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:154: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     assert(adamGT.getAlleles.sameElements(List(GenotypeAllele.REF, GenotypeAllele.ALT)))
[WARNING]                   ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:184: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       assert(adamVariant.variant.getFiltersFailed.sameElements(List("LowMQ")))
[WARNING]                                  ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:219: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       assert(adamGT.getVariantCallingAnnotations.getFiltersFailed.sameElements(List("LowMQ")))
[WARNING]                                                  ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:234: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     assert(htsjdkVC.getAlternateAlleles.sameElements(List(Allele.create("T"))))
[WARNING]                     ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:245: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       .setStrandBiasComponents(List(0, 2, 4, 6).map(i => i: java.lang.Integer))
[WARNING]                                                    ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:246: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       .setAlleles(List(GenotypeAllele.REF, GenotypeAllele.ALT))
[WARNING]                       ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:279: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       .setStrandBiasComponents(List(0, 2).map(i => i: java.lang.Integer))
[WARNING]                                              ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:280: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       .setAlleles(List(GenotypeAllele.REF, GenotypeAllele.ALT))
[WARNING]                       ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:298: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       .setStrandBiasComponents(List(0, 2).map(i => i: java.lang.Integer))
[WARNING]                                              ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:299: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       .setAlleles(List(GenotypeAllele.REF, GenotypeAllele.ALT))
[WARNING]                       ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:320: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     for ((allele, idx) <- vc.getAlternateAlleles.zipWithIndex) {
[WARNING]                              ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:328: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     val gb = new GenotypeBuilder("NA12878", List(Allele.create("T"), Allele.create("G")))
[WARNING]                                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:347: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     assert(adamGT1.getAlleles.sameElements(List(GenotypeAllele.ALT, GenotypeAllele.OTHER_ALT)))
[WARNING]                    ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:349: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     assert(adamGT1.getGenotypeLikelihoods
[WARNING]                    ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:354: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     assert(adamGT2.getAlleles.sameElements(List(GenotypeAllele.OTHER_ALT, GenotypeAllele.ALT)))
[WARNING]                    ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:356: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     assert(adamGT2.getGenotypeLikelihoods
[WARNING]                    ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:380: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     val gb = new GenotypeBuilder("NA12878", List(Allele.create("A", true), Allele.create("A", true)))
[WARNING]                                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:393: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     assert(adamGT.getAlleles.sameElements(List(GenotypeAllele.REF, GenotypeAllele.REF)))
[WARNING]                   ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:396: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     assert(adamGT.getNonReferenceLikelihoods
[WARNING]                   ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:421: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     assert(variant.variant.getNames.length === 1)
[WARNING]                            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:433: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     assert(variant.variant.getNames.length === 2)
[WARNING]                            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:543: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       genotypeAttributes)))((bldr, fn) => {
[WARNING]       ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:693: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     assert(gls(0) < -0.99e-1 && gls(0) > -1.1e-1)
[WARNING]            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:693: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     assert(gls(0) < -0.99e-1 && gls(0) > -1.1e-1)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:694: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     assert(gls(1) < -0.99e-3 && gls(1) > -1.1e-3)
[WARNING]            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:694: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     assert(gls(1) < -0.99e-3 && gls(1) > -1.1e-3)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:695: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     assert(gls(2) < -0.99e-6 && gls(2) > -1.1e-6)
[WARNING]            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:695: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     assert(gls(2) < -0.99e-6 && gls(2) > -1.1e-6)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:714: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     assert(sb(0) === 10)
[WARNING]            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:715: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     assert(sb(1) === 12)
[WARNING]            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:716: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     assert(sb(2) === 14)
[WARNING]            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:717: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     assert(sb(3) === 16)
[WARNING]            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:762: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     assert(failedFilters(0) === "FAILED_FILTER")
[WARNING]            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:776: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     assert(failedFilters(0) === "FAILED_FILTER1")
[WARNING]            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:777: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     assert(failedFilters(1) === "FAILED_FILTER2")
[WARNING]            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:778: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     assert(failedFilters(2) === "FAILED_FILTER3")
[WARNING]            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:930: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]         .map(d => d: java.lang.Double))
[WARNING]             ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:954: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]           .map(i => i: java.lang.Integer))
[WARNING]               ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:962: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]         .map(i => i: java.lang.Integer))
[WARNING]             ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:1089: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       .setFiltersFailed(Seq("lowmq"))
[WARNING]                            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:1101: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       .setFiltersFailed(Seq("lowmq", "lowdp"))
[WARNING]                            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:1195: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     assert(v.getNames.length === 1)
[WARNING]              ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:1205: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     assert(v.getNames.length === 2)
[WARNING]              ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:1262: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]         vcb.filters(Set("FAILED1", "FAILED2", "FAILED3"))
[WARNING]                        ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:1267: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     val failedSet = v.getFiltersFailed.toSet
[WARNING]                       ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:1285: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       .setNames(Seq("name"))
[WARNING]                    ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:1295: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       .setNames(Seq("name1", "name2"))
[WARNING]                    ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:1364: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       .setFiltersFailed(Seq("FAILED"))
[WARNING]                            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:1378: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       .setFiltersFailed(Seq("FAILED1", "FAILED2"))
[WARNING]                            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:1493: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       10).map(i => i: java.lang.Integer)
[WARNING]              ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:1501: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       10, 13, 16).map(i => i: java.lang.Integer)
[WARNING]                      ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:1516: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       0.1f).map(i => i: java.lang.Float)
[WARNING]                ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:1523: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     val acList: java.util.List[String] = List("+Inf")
[WARNING]                                              ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:1530: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     val acList: java.util.List[String] = List("-Inf")
[WARNING]                                              ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:1538: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       0.1f, 0.01f, 0.001f).map(i => i: java.lang.Float)
[WARNING]                               ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:1552: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     val acList: java.util.List[String] = List("10D90M")
[WARNING]                                              ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:1559: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     val acList: java.util.List[String] = List("10D90M", "100M", "90M10D")
[WARNING]                                              ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:1575: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       5, 10).map(i => i: java.lang.Integer)
[WARNING]                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:1584: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       5, 10, 13, 16).map(i => i: java.lang.Integer)
[WARNING]                         ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:1601: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       5, 10).map(i => i: java.lang.Integer)
[WARNING]                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:1610: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       5, 10, 13, 16).map(i => i: java.lang.Integer)
[WARNING]                         ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:1627: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       5, 10).map(i => i: java.lang.Integer)
[WARNING]                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:1636: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       5, 10, 13, 16).map(i => i: java.lang.Integer)
[WARNING]                         ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:2436: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       Map[String, java.lang.Object](("ONE_INT", "42")))
[WARNING]                                    ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:2459: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       Map[String, java.lang.Object](("FOUR_INTS", "5,10,15,20")))
[WARNING]                                    ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:2482: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       Map[String, java.lang.Object](("FOUR_FLOATS", "5.0,10.1,15.2,20.3")))
[WARNING]                                    ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:2505: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       Map[String, java.lang.Object](("A_INT", "10,15,20")))
[WARNING]                                    ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:2528: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       Map[String, java.lang.Object](("R_INT", "5,10,15,20")))
[WARNING]                                    ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:2551: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       Map[String, java.lang.Object](("R_STRING", "foo,bar,baz")))
[WARNING]                                    ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:2574: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       Map[String, java.lang.Object](("STRING_G", "foo,bar,baz")))
[WARNING]                                    ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/CoverageSuite.scala:37: warning: variable start in class Feature is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(coverageAfterConversion.start == featureToConvert.start)
[WARNING]                                                              ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/CoverageSuite.scala:38: warning: variable end in class Feature is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(coverageAfterConversion.end == featureToConvert.end)
[WARNING]                                                            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/CoverageSuite.scala:40: warning: variable score in class Feature is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(coverageAfterConversion.count == featureToConvert.score)
[WARNING]                                                              ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/CoverageSuite.scala:57: warning: variable start in class Feature is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(coverageAfterConversion.start == featureToConvert.start)
[WARNING]                                                              ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/CoverageSuite.scala:58: warning: variable end in class Feature is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(coverageAfterConversion.end == featureToConvert.end)
[WARNING]                                                            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/CoverageSuite.scala:60: warning: variable score in class Feature is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(coverageAfterConversion.count == featureToConvert.score)
[WARNING]                                                              ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/CoverageSuite.scala:61: warning: variable sampleId in class Feature is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(coverageAfterConversion.optSampleId == Some(featureToConvert.sampleId))
[WARNING]                                                                         ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/MdTagSuite.scala:194: warning: method recordToRichRecord in object RichAlignment is deprecated (since 0.21.0): Use explicit conversion wherever possible in new development.
[WARNING]     assert(read.mdTag.get.end === read.getEnd)
[WARNING]            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/MdTagSuite.scala:475: warning: method recordToRichRecord in object RichAlignment is deprecated (since 0.21.0): Use explicit conversion wherever possible in new development.
[WARNING]     val tag = read.mdTag.get
[WARNING]               ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/MdTagSuite.scala:482: warning: method recordToRichRecord in object RichAlignment is deprecated (since 0.21.0): Use explicit conversion wherever possible in new development.
[WARNING]     assert(tag.getReference(read) === "AAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGGGGAAAAAAAAAAGGGGGGGGGGAAAAAAAAAAA")
[WARNING]                             ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/MdTagSuite.scala:495: warning: method recordToRichRecord in object RichAlignment is deprecated (since 0.21.0): Use explicit conversion wherever possible in new development.
[WARNING]     val tag = read.mdTag.get
[WARNING]               ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/MdTagSuite.scala:496: warning: method recordToRichRecord in object RichAlignment is deprecated (since 0.21.0): Use explicit conversion wherever possible in new development.
[WARNING]     assert(tag.getReference(read, withGaps = true) === "AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGGGGAAAAAAAAAAA")
[WARNING]                             ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/MdTagSuite.scala:510: warning: method recordToRichRecord in object RichAlignment is deprecated (since 0.21.0): Use explicit conversion wherever possible in new development.
[WARNING]     val newTag = MdTag.moveAlignment(read, newCigar)
[WARNING]                                      ^
[WARNING] 168 warnings found
[INFO] prepare-compile in 0 s
[INFO] compile in 28 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-core-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-core-spark3_2.12 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-core-spark3_2.12 ---
Discovery starting.
Discovery completed in 1 second, 825 milliseconds.
Run starting. Expected test count is: 1175
RepairPartitionsSuite:
- don't pull from the first partition
- properly handle pulling from an empty iterator
- gets a single read from the partition if there are no other reads in the pair
- gets all the reads from a pair from the start of a partition
- properly handle dropping from an empty iterator
- don't drop from the first partition
- drop a single read from the partition if there are no other reads in the pair
- drops all the reads from a pair from the start of a partition
- only append to the first partition
- drop a single read from the partition and append read when in the middle
- drop reads from the start and don't append when in the last partition
- can't have more records than number of partitions
- unroll array for broadcast
2020-08-06 17:07:39 WARN  Utils:69 - Your hostname, research-jenkins-worker-09 resolves to a loopback address: 127.0.1.1; using 192.168.10.31 instead (on interface enp4s0f0)
2020-08-06 17:07:39 WARN  Utils:69 - Set SPARK_LOCAL_IP if you need to bind to another address
2020-08-06 17:07:40 WARN  NativeCodeLoader:62 - Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
- move pairs around an rdd
FlagStatSuite:
- Standard FlagStat test
ModPartitionerSuite:
- report number of partitions correctly
- partition a number that is lower than the number of partitions and positive
- partition a number that is greater than the number of partitions and positive
- partition a number that is lower than the number of partitions and negative
- partition a number that is greater than the number of partitions and negative
- fire an exception if input is not an integer
TwoBitFileSuite:
- correctly read sequence from .2bit file
- correctly return masked sequences from .2bit file
- correctly return Ns from .2bit file
- correctly calculates sequence dictionary
NonoverlappingRegionsSuite:
- alternating returns an alternating seq of items
- Single region returns itself
- Two adjacent regions will be merged
- Nonoverlapping regions will all be returned
- Many overlapping regions will all be merged
- ADAMRecords return proper references
ReferencePositionSuite:
- create reference position from mapped read
- create reference position from variant
- create reference position from genotype
- create reference position from variant starting at vcf 0
- create reference position from genotype starting at vcf 0
ConsensusGeneratorFromReadsSuite:
- checking search for consensus list for artificial reads
FragmentConverterSuite:
- build a fragment collector and convert to a read
- if a fragment isn't associated with a contig, don't get a fragment collector
- convert an rdd of discontinuous fragments, all from the same contig
- convert an rdd of contiguous fragments, all from the same contig
- convert an rdd of varied fragments from multiple contigs
FileMergerSuite:
- cannot write both empty gzip block and cram eof
- buffer size must be non-negative
RichAlignmentSuite:
- Unclipped Start
- Unclipped End
- tags contains optional fields
- read overlap unmapped read
- read overlap reference position
- read overlap same position different contig
SingleReadBucketSuite:
- convert unmapped pair to fragment
- convert proper pair to fragment
- convert read pair to fragment with first of pair chimeric read
RecalibrationTableSuite:
- look up quality scores in table
FlankSlicesSuite:
- don't put flanks on non-adjacent slices
- put flanks on adjacent slices
InterleavedFastqInputFormatSuite:
- interleaved FASTQ hadoop reader: interleaved_fastq_sample1.ifq->interleaved_fastq_sample1.ifq.output
- interleaved FASTQ hadoop reader: interleaved_fastq_sample2.ifq->interleaved_fastq_sample2.ifq.output
- interleaved FASTQ hadoop reader: interleaved_fastq_sample3.ifq->interleaved_fastq_sample3.ifq.output
- interleaved FASTQ hadoop reader: interleaved_fastq_sample4.ifq->interleaved_fastq_sample4.ifq.output
- interleaved FASTQ hadoop reader: interleaved_fastq_sample5.ifq->interleaved_fastq_sample5.ifq.output
TreeRegionJoinSuite:
- run a join between data on a single contig
ReferenceRegionSuite:
- cannot create an empty predicate
- parse empty string throws IllegalArgumentException
- parse contigName only string into reference regions
- parse to end strings into reference regions
- parse string into reference regions
- contains(: ReferenceRegion)
- contains(: ReferencePosition)
- merge
- overlaps and covers
- overlapsBy and coversBy
- distance(: ReferenceRegion)
- distance(: ReferencePosition)
- unstrandedDistance
- subtract fails on non-overlapping and non-covering regions
- subtract
- create region from unmapped read fails
- create region from read with null alignment positions fails
- create stranded region from unmapped read fails
- create stranded region from read with null alignment positions fails
- create stranded region from read with null alignment strand fails
- create stranded region from read on forward strand
- create stranded region from read on reverse strand
- create region from mapped read contains read start and end
- validate that adjacent regions can be merged
- validate that non-adjacent regions cannot be merged
- validate that nearby regions can be merged
- validate that non-nearby regions cannot be merged
- compute convex hull of two sets
- region name is sanitized when creating region from read
- intersection fails on non-overlapping regions
- intersection fails when minOverlap is not met
- compute intersection
- overlap tests for oriented reference region
- check the width of a reference region
- make a reference region for a variant or genotype
- make a reference region for a variant or genotype starting at VCF 0
- uniformly pad a reference region
- uniformly pad a reference region into negative coordinate space, ensure non negative start
- unevenly pad a reference region
- unevenly pad a reference region into negative coordinate space, ensure non negative start
- can build an open ended reference region
- can build an open ended reference region with strand
- can build a reference region with an open start position
- can build a reference region with an open start position with strand
- can build a reference region that covers the entirety of a contig
- can build a reference region that covers the entirety of a contig with strand
- convert a genotype and then get the reference region
- create region from feature with null alignment positions fails
- create stranded region from feature with null alignment positions fails
- create stranded region from feature with null alignment strand fails
- create stranded region from feature on forward strand
- create stranded region from feature on reverse strand
CoverageDatasetSuite:
- correctly saves coverage
- can read a bed file to coverage
- correctly filters coverage with predicate
- keeps sample metadata
- can read a bed file with multiple samples to coverage
- correctly flatmaps coverage without aggregated bins
- correctly flatmaps coverage with aggregated bins
- collapses coverage records in one partition
- approximately collapses coverage records in multiple partitions
2020-08-06 17:07:58 WARN  DatasetBoundSliceDataset:190 - Saving directly as Parquet from SQL. Options other than compression codec are ignored.
- transform coverage to slice genomic dataset
- transform coverage to feature genomic dataset
2020-08-06 17:07:59 WARN  package:69 - Truncated the string representation of a plan since it was too large. This behavior can be adjusted by setting 'spark.sql.debug.maxToStringFields'.
- transform coverage to fragment genomic dataset
- transform coverage to read genomic dataset
- transform coverage to genotype genomic dataset
- transform coverage to variant genomic dataset
- transform coverage to variant context genomic dataset
- copy coverage rdd
- copy coverage dataset
- copy coverage rdd without sequence dictionary
- copy coverage dataset without sequence dictionary
- transform dataset via java API
RecalibratorSuite:
- don't replace quality if quality was null
- if no covariates, return alignment
- skip recalibration if base is below quality threshold
- recalibrate changed bases above quality threshold
SliceDatasetSuite:
- create a new slice genomic dataset
- create a new slice genomic dataset with sequence dictionary
- merge slices into a sequence genomic dataset
- save as parquet
- round trip as parquet
- save as fasta
- save as single file fasta
- convert slices to reads
- convert slices to sequences
GenotypeDatasetSuite:
- union two genotype genomic datasets together
- round trip to parquet
- round trip to partitioned parquet
- use broadcast join to pull down genotypes mapped to targets
- use right outer broadcast join to pull down genotypes mapped to targets
- use shuffle join to pull down genotypes mapped to targets
- use right outer shuffle join to pull down genotypes mapped to targets
- use left outer shuffle join to pull down genotypes mapped to targets
- use full outer shuffle join to pull down genotypes mapped to targets
- use shuffle join with group by to pull down genotypes mapped to targets
- use right outer shuffle join with group by to pull down genotypes mapped to targets
- convert back to variant contexts
- load parquet to sql, save, re-read from avro
2020-08-06 17:08:18 WARN  DatasetBoundSliceDataset:190 - Saving directly as Parquet from SQL. Options other than compression codec are ignored.
- transform genotypes to slice genomic dataset
- transform genotypes to coverage genomic dataset
- transform genotypes to feature genomic dataset
- transform genotypes to fragment genomic dataset
- transform genotypes to read genomic dataset
- transform genotypes to variant genomic dataset
- transform genotypes to variant context genomic dataset
- loading genotypes then converting to variants yields same output as loading variants
- filter RDD bound genotypes to genotype filters passed
- filter dataset bound genotypes to genotype filters passed
- filter RDD bound genotypes by genotype quality
- filter dataset bound genotypes by genotype quality
- filter RDD bound genotypes by read depth
- filter dataset bound genotypes by read depth
- filter RDD bound genotypes by alternate read depth
- filter dataset bound genotypes by alternate read depth
- filter RDD bound genotypes by reference read depth
- filter dataset bound genotypes by reference read depth
- filter RDD bound genotypes by sample
- filter dataset bound genotypes by sample
- filter RDD bound genotypes by samples
- filter dataset bound genotypes by samples
- filter RDD bound no call genotypes
- filter dataset no call genotypes
- round trip gVCF END attribute without nested variant annotations rdd bound
- round trip gVCF END attribute without nested variant annotations dataset bound
- round trip gVCF END attribute with nested variant annotations rdd bound
- round trip gVCF END attribute with nested variant annotations dataset bound
- transform dataset via java API
FragmentDatasetSuite:
- don't lose any reads when piping interleaved fastq to sam
- don't lose any reads when piping tab5 to sam
- don't lose any reads when piping tab6 to sam
- use broadcast join to pull down fragments mapped to targets
- use right outer broadcast join to pull down fragments mapped to targets
- use shuffle join to pull down fragments mapped to targets
- use right outer shuffle join to pull down fragments mapped to targets
- use left outer shuffle join to pull down fragments mapped to targets
- use full outer shuffle join to pull down fragments mapped to targets
- use shuffle join with group by to pull down fragments mapped to targets
- use right outer shuffle join with group by to pull down fragments mapped to targets
- bin quality scores in fragments
- union two genomic datasets of fragments together
- load parquet to sql, save, re-read from avro
- transform fragments to slice genomic dataset
- transform fragments to coverage genomic dataset
- transform fragments to feature genomic dataset
- transform fragments to read genomic dataset
- transform fragments to genotype genomic dataset
- transform fragments to variant genomic dataset
- transform fragments to variant context genomic dataset
- paired read names with index sequences in read names can group into fragments
- interleaved paired read names with index sequences in read names can group into fragments
- interleaved paired read names with index sequences in read names as fragments
- transform dataset via java API
- dataset and rdd conversion to alignments are equivalent
SingleFastqInputFormatSuite:
- FASTQ hadoop reader: fastq_sample1.fq->single_fastq_sample1.fq.output
- FASTQ hadoop reader: fastq_sample2.fq->single_fastq_sample2.fq.output
- FASTQ hadoop reader: fastq_sample3.fq->single_fastq_sample3.fq.output
- FASTQ hadoop reader: fastq_sample4.fq->single_fastq_sample4.fq.output
VariantContextDatasetSuite:
- load a gvcf with a missing info field set to .
- union two variant context genomic datasets together
- can write, then read in .vcf file
- can write as a single file via simple saveAsVcf method, then read in .vcf file
- can write as a single file via full saveAsVcf method, then read in .vcf file
- transform a vcf file with bad header
- read a vcf file with multi-allelic variants to split
- support VCFs with +Inf/-Inf float values
- support VCFs with `nan` instead of `NaN` float values
- don't lose any variants when piping as VCF
- pipe works with empty partitions
- don't lose any non-default VCF header lines or attributes when piping as VCF
- save a file sorted by contig index
- save a lexicographically sorted file
- save a multiallelic gvcf !!! IGNORED !!!
- test metadata
- save sharded bgzip vcf
- save bgzip vcf as single file
- can't save file with non-vcf extension
- transform variant contexts to slice genomic dataset
- transform variant contexts to coverage genomic dataset
- transform variant contexts to feature genomic dataset
- transform variant contexts to fragment genomic dataset
- transform variant contexts to read genomic dataset
- transform variant contexts to genotype genomic dataset
- transform variant contexts to variant genomic dataset
- save and reload from partitioned parquet
- transform dataset via java API
ConsensusSuite:
- test the insertion of a consensus insertion into a reference
- test the insertion of a consensus deletion into a reference
- inserting empty consensus returns the reference
SequenceDatasetSuite:
- create a new sequence genomic dataset
- create a new sequence genomic dataset with sequence dictionary
- save as parquet
- round trip as parquet
- save as fasta
- save as single file fasta
- convert sequences to reads
- convert sequences to slices
- slice sequences to a maximum length
- slice sequences shorter than maximum length
- filter sequences by overlapping region
- filter sequences failing to overlap region
- filter sequences by overlapping regions
- filter sequences failing to overlap regions
- slice sequences overlapping a smaller region
- slice sequences overlapping a larger region
- slice sequences failing to overlap a region
- slice sequences overlapping smaller regions
- slice sequences overlapping larger regions
- slice sequences failing to overlap regions
AttributeUtilsSuite:
- parseTags returns a reasonable set of tagStrings
- parseTags works with NumericSequence tagType
- empty string is parsed as zero tagStrings
- incorrectly formatted tag throws an exception
- string tag with a ':' in it is correctly parsed
- oq string tag with many ':' in it is correctly parsed
- oq string tag with a ',' in it is correctly parsed
- if a tag is an array but doesn't define it's format, throw
MarkDuplicatesSuite:
- single read
- reads at different positions
- reads at the same position
- reads at the same position with clipping
- reads on reverse strand
- unmapped reads
- read pairs
- read pairs with fragments
- quality scores
- read pairs that cross chromosomes
- single fragment
- fragments at different positions
- fragments at the same position
- fragments at the same position with clipping
- fragments on reverse strand
- unmapped fragments
- read pairs as fragments
- read pairs with fragments as fragments
- chimeric fragments
- inverse pairs
- supplemental reads
TranscriptEffectConverterSuite:
- parse empty transcript effect
- parse empty transcript effect strict validation stringency
- parse invalid transcript effect
- parse invalid transcript effect strict validation stringency
- parse transcript effect
- parse empty list VCF ANN attribute
- parse empty list VCF ANN attribute strict validation stringency
- parse empty string VCF ANN attribute
- parse empty string VCF ANN attribute strict validation stringency
- parse invalid VCF ANN attribute
- parse invalid VCF ANN attribute strict validation stringency
- parse VCF ANN attribute with one transcript effect
- parse VCF ANN attribute with multiple transcript effects
- convert to transcript effect from null VCF ANN attribute in variant context
- convert to transcript effect from empty list VCF ANN attribute in variant context
- convert to transcript effect from empty list VCF ANN attribute in variant context strict validation stringency
- convert to transcript effect from empty string VCF ANN attribute in variant context
- convert to transcript effect from empty string VCF ANN attribute in variant context strict validation stringency
- convert to transcript effect from invalid VCF ANN attribute in variant context
- convert to transcript effect from invalid VCF ANN attribute in variant context strict validation stringency
2020-08-06 17:09:14 WARN  TranscriptEffectConverter$:190 - Could not convert VCF INFO reserved key ANN value to TranscriptEffect, caught java.lang.NumberFormatException: For input string: "not a number".
- convert to transcript effect from VCF ANN attribute with invalid number in variant context lenient validation stringency
2020-08-06 17:09:14 WARN  TranscriptEffectConverter$:190 - Could not convert VCF INFO reserved key ANN value to TranscriptEffect, caught java.lang.NumberFormatException: For input string: "not a number".
- convert to transcript effect from VCF ANN attribute with invalid fraction in variant context lenient validation stringency
- convert to transcript effect from VCF ANN attribute with invalid number in variant context strict validation stringency
- convert to transcript effect from VCF ANN attribute with invalid fraction in variant context strict validation stringency
- convert to transcript effect from VCF ANN attribute in variant context different alt allele
- convert to transcript effect from VCF ANN attribute in variant context same alt allele
- convert to transcript effect from VCF ANN attribute in variant context multiple effects same alt allele
- convert transcript effect to VCF ANN attribute value
- convert transcript effect with null fields to VCF ANN attribute value
2020-08-06 17:09:14 WARN  TranscriptEffectConverter$:190 - Incorrect fractional value ?/2, missing numerator
- convert transcript effect with incorrect fractional value to VCF ANN attribute value
IndelRealignmentTargetSuite:
- checking simple realignment target
- creating simple target from read with deletion
- creating simple target from read with insertion
- joining simple realignment targets on same chr
- joining simple realignment targets on different chr throws exception
- creating targets from three intersecting reads, same indel
- creating targets from three intersecting reads, two different indel
- creating targets from two disjoint reads
- creating targets for artificial reads: one-by-one
- creating targets for artificial reads: all-at-once (merged)
- creating indel targets for mason reads
- additional indel targets taken from consensus generator
NormalizationUtilsSuite:
- cannot move an indel left if there are no bases to it's left
- move a simple indel to farthest position left until bases run out
- move a simple indel to farthest position left, past length of indel
- cannot move a left normalized indel in a short tandem repeat
- move an indel in a short tandem repeat
- move an indel in a short tandem repeat of more than 2 bases, where shift is not an integer multiple of repeated sequence length
- moving a simple read with single deletion that cannot shift
- shift an indel left by 0 in a cigar
- shift an indel left by 1 in a cigar
- do not left align a complex read which is already left aligned
ReadGroupDictionarySuite:
- simple conversion to and from sam read group
- sample name must be set
- simple equality checks
- get samples from read group dictionary
- empty read group is empty
- merging a dictionary with itself should work
- round trip a record with all attributes set
RightOuterTreeRegionJoinSuite:
- Ensure same reference regions get passed together
- Overlapping reference regions
InnerShuffleRegionJoinSuite:
- Overlapping reference regions
- Multiple reference regions do not throw exception
FeatureDatasetSuite:
- round trip GTF format
- save GTF as GFF3 format
- save GTF as BED format
- save GTF as IntervalList format
- save GTF as NarrowPeak format
- save GFF3 as GTF format
- save GFF3 as BED format
- save GFF3 as IntervalList format
- save GFF3 as NarrowPeak format
- round trip GFF3 format
- ignore FASTA sequence in GFF3 file
- save BED as GTF format
- save BED as GFF3 format
- save BED as IntervalList format
- save BED as NarrowPeak format
- round trip BED6 format
- keeps sample metadata
- round trip BED12 format
- save to UCSC BED format
- save IntervalList as GTF format
- save IntervalList as GFF3 format
- save IntervalList as BED format
- save IntervalList as IntervalList format
- save IntervalList as NarrowPeak format
- round trip IntervalList format
- save NarrowPeak as GTF format
- save NarrowPeak as GFF3 format
- save NarrowPeak as BED format
- save NarrowPeak as IntervalList format
- save NarrowPeak as NarrowPeak format
- round trip NarrowPeak format
- sort by reference
- sort by reference and feature fields
- sort gene features by reference and gene structure
- sort transcript features by reference and gene structure
- sort exon features by reference and gene structure
- sort intron features by reference and gene structure
- correctly flatmaps CoverageDataset from FeatureDataset
- use broadcast join to pull down features mapped to targets
- use right outer broadcast join to pull down features mapped to targets
- use shuffle join to pull down features mapped to targets
- use right outer shuffle join to pull down features mapped to targets
- use left outer shuffle join to pull down features mapped to targets
- use full outer shuffle join to pull down features mapped to targets
- use shuffle join with group by to pull down features mapped to targets
- use right outer shuffle join with group by to pull down features mapped to targets
- union two feature rdds together
- obtain sequence dictionary contig lengths from header in IntervalList format
- don't lose any features when piping as BED format
- don't lose any features when piping as GTF format
- don't lose any features when piping as GFF3 format
- don't lose any features when piping as NarrowPeak format
- load parquet to sql, save, re-read from avro
- load partitioned parquet to sql, save, re-read from avro
2020-08-06 17:09:37 WARN  DatasetBoundSliceDataset:190 - Saving directly as Parquet from SQL. Options other than compression codec are ignored.
- transform features to slice genomic dataset
- transform features to coverage genomic dataset
- transform features to fragment genomic dataset
- transform features to read genomic dataset
- transform features to genotype genomic dataset
- transform features to variant genomic dataset
- transform features to variant context genomic dataset
- filter RDD bound features by feature type
- filter dataset bound features by feature type
- filter RDD bound features by feature types
- filter dataset bound features by feature types
- filter RDD bound features by gene
- filter dataset bound features by gene
- filter RDD bound features by genes
- filter dataset bound features by genes
- filter RDD bound features by transcript
- filter dataset bound features by transcript
- filter RDD bound features by transcripts
- filter dataset bound features by transcripts
- filter RDD bound features by exon
- filter dataset bound features by exon
- filter RDD bound features by exons
- filter dataset bound features by exons
- filter RDD bound features by score
- filter dataset bound features by score
- filter RDD bound features by parent
- filter dataset bound features by parent
- filter RDD bound features by parents
- filter dataset bound features by parents
- filter RDD bound features by attribute
- filter dataset bound features by attribute
- transform dataset via java API
AlphabetSuite:
- test size of a case-sensitive alphabet
- test apply of a case-sensitive alphabet
- test reverse complement of a case-sensitive alphabet
- test exact reverse complement of a case-sensitive alphabet
- test size of a case-insensitive alphabet
- test apply of a case-insensitive alphabet
- test reverse complement of a case-insensitive alphabet
- test exact reverse complement of a case-insensitive alphabet
- DNA alphabet
- map unknown bases to N
SortedGenomicDatasetSuite:
- testing that partition and sort provide correct outputs
- testing copartition maintains or adds sort
- testing that we don't drop any data on the right side even though it doesn't map to a partition on the left
- testing that sorted shuffleRegionJoin matches unsorted
- testing that sorted fullOuterShuffleRegionJoin matches unsorted
- testing that sorted rightOuterShuffleRegionJoin matches unsorted
- testing that sorted leftOuterShuffleRegionJoin matches unsorted
- testing that we can persist the sorted knowledge
VariantContextConverterSuite:
- Convert htsjdk site-only SNV to ADAM
- Convert somatic htsjdk site-only SNV to ADAM
- Convert htsjdk site-only CNV to ADAM
- Convert htsjdk SNV w/ genotypes w/ phase information to ADAM
- Convert htsjdk SNV with different variant filters to ADAM
- Convert htsjdk SNV with different genotype filters to ADAM
- Convert ADAM site-only SNV to htsjdk
- Convert ADAM SNV w/ genotypes to htsjdk
- Convert ADAM SNV w/ genotypes but bad SB to htsjdk with strict validation
2020-08-06 17:09:52 WARN  VariantContextConverter:190 - Applying annotation extraction function org.bdgenomics.adam.converters.VariantContextConverter$$Lambda$694/711112124@f54659f to {"variant": {"referenceName": "1", "start": 0, "end": 1, "names": [], "splitFromMultiAllelic": false, "referenceAllele": "A", "alternateAllele": "T", "quality": null, "filtersApplied": null, "filtersPassed": null, "filtersFailed": [], "annotation": null}, "referenceName": null, "start": null, "end": null, "variantCallingAnnotations": {"filtersApplied": null, "filtersPassed": null, "filtersFailed": [], "downsampled": null, "baseQRankSum": null, "fisherStrandBiasPValue": 3.0, "rmsMapQ": 0.0, "mapq0Reads": 5, "mqRankSum": null, "readPositionRankSum": null, "genotypePriors": [], "genotypePosteriors": [], "vqslod": null, "culprit": null, "attributes": {}}, "sampleId": "NA12878", "sampleDescription": null, "processingDescription": null, "alleles": ["REF", "ALT"], "expectedAlleleDosage": null, "referenceReadDepth": null, "alternateReadDepth": null, "readDepth": null, "minReadDepth": null, "genotypeQuality": null, "genotypeLikelihoods": [], "nonReferenceLikelihoods": [], "strandBiasComponents": [0, 2], "splitFromMultiAllelic": false, "phased": false, "phaseSetId": null, "phaseQuality": null} failed with java.lang.IllegalArgumentException: requirement failed: Illegal strand bias components length. Must be empty or 4. In:
- Convert ADAM SNV w/ genotypes but bad SB to htsjdk with lenient validation
{"variant": {"referenceName": "1", "start": 0, "end": 1, "names": [], "splitFromMultiAllelic": false, "referenceAllele": "A", "alternateAllele": "T", "quality": null, "filtersApplied": null, "filtersPassed": null, "filtersFailed": [], "annotation": null}, "referenceName": null, "start": null, "end": null, "variantCallingAnnotations": {"filtersApplied": null, "filtersPassed": null, "filtersFailed": [], "downsampled": null, "baseQRankSum": null, "fisherStrandBiasPValue": 3.0, "rmsMapQ": 0.0, "mapq0Reads": 5, "mqRankSum": null, "readPositionRankSum": null, "genotypePriors": [], "genotypePosteriors": [], "vqslod": null, "culprit": null, "attributes": {}}, "sampleId": "NA12878", "sampleDescription": null, "processingDescription": null, "alleles": ["REF", "ALT"], "expectedAlleleDosage": null, "referenceReadDepth": null, "alternateReadDepth": null, "readDepth": null, "minReadDepth": null, "genotypeQuality": null, "genotypeLikelihoods": [], "nonReferenceLikelihoods": [], "strandBiasComponents": [0, 2], "splitFromMultiAllelic": false, "phased": false, "phaseSetId": null, "phaseQuality": null}.
- Convert htsjdk multi-allelic sites-only SNVs to ADAM
- Convert htsjdk multi-allelic SNVs to ADAM and back to htsjdk
- Convert gVCF reference records to ADAM
- Convert htsjdk variant context with no IDs to ADAM
- Convert htsjdk variant context with one ID to ADAM
- Convert htsjdk variant context with multiple IDs to ADAM
- Convert ADAM variant context with no names to htsjdk
- Convert ADAM variant context with one name to htsjdk
- Convert ADAM variant context with multiple names to htsjdk
- Convert ADAM variant context with null filters applied to htsjdk
- Convert ADAM variant context with no filters applied to htsjdk
- Convert ADAM variant context with passing filters to htsjdk
- Convert ADAM variant context with failing filters to htsjdk
- no phasing set going htsjdk->adam
- phased but no phase set info going htsjdk->adam
- set phase set and extract going htsjdk->adam
- no allelic depth going htsjdk->adam
- set allelic depth going htsjdk->adam
- no gt read depth going htsjdk->adam
- extract gt read depth going htsjdk->adam
- no min gt read depth going htsjdk->adam
- extract min gt read depth going htsjdk->adam
- no genotype quality going htsjdk->adam
- extract genotype quality going htsjdk->adam
- no phred likelihood going htsjdk->adam
- extract phred likelihoods going htsjdk->adam
- no strand bias info going htsjdk->adam
- extract strand bias info going htsjdk->adam
- no filters going htsjdk->adam
- filters passed going htsjdk->adam
- extract single filter going htsjdk->adam
- extract multiple filters going htsjdk->adam
- no fisher strand bias going htsjdk->adam
- extract fisher strand bias going htsjdk->adam
- no rms mapping quality going htsjdk->adam
- extract rms mapping quality going htsjdk->adam
- no mq0 going htsjdk->adam
- extract mq0 going htsjdk->adam
- no gt read depth going adam->htsjdk
- extract gt read depth going adam->htsjdk
- throw iae if missing one component of gt read depth going adam->htsjdk
- no depth going adam->htsjdk
- extract depth going adam->htsjdk
- no min depth going adam->htsjdk
- extract min depth going adam->htsjdk
- no quality going adam->htsjdk
- extract quality going adam->htsjdk
- no genotype likelihoods going adam->htsjdk
- extract genotype likelihoods going adam->htsjdk
- no strand bias going adam->htsjdk
- malformed strand bias going adam->htsjdk
- extract strand bias going adam->htsjdk
- no phasing info going adam->htsjdk
- unphased going adam->htsjdk
- phased but no ps/pq going adam->htsjdk
- phased but no pq going adam->htsjdk
- phased but no ps going adam->htsjdk
- phased going adam->htsjdk
- no filter info going adam->htsjdk
- if filters applied, must set passed/failed going adam->htsjdk
- filters passed going adam->htsjdk
- if filters failed, must set filters failed going adam->htsjdk
- single filter failed going adam->htsjdk
- multiple filters failed going adam->htsjdk
- no fisher strand bias going adam->htsjdk
- extract fisher strand bias going adam->htsjdk
- no rms mapping quality going adam->htsjdk
- extract rms mapping quality going adam->htsjdk
- no mapping quality 0 reads going adam->htsjdk
- extract mapping quality 0 reads going adam->htsjdk
- no names set going htsjdk->adam
- single name set going htsjdk->adam
- multiple names set going htsjdk->adam
- no quality going htsjdk->adam
- quality set going htsjdk->adam
- no filters applied going htsjdk->adam
- filters applied and passed going htsjdk->adam
- single filter applied and failed going htsjdk->adam
- multiple filters applied and failed going htsjdk->adam
- no names set adam->htsjdk
- set a single name adam->htsjdk
- set multiple names adam->htsjdk
- no qual set adam->htsjdk
- qual is set adam->htsjdk
- no filters applied adam->htsjdk
- null filters applied adam->htsjdk
- filters passed adam->htsjdk
- if filter failed, must have filters adam->htsjdk
- single filter failed adam->htsjdk
- multiple filters failed adam->htsjdk
- no ancestral allele set going htsjdk->adam
- ancestral allele set going htsjdk->adam
- no dbsnp membership set going htsjdk->adam
- dbsnp membership set going htsjdk->adam
- no hapmap2 membership set going htsjdk->adam
- hapmap2 membership set going htsjdk->adam
- no hapmap3 membership set going htsjdk->adam
- hapmap3 membership set going htsjdk->adam
- no validated set going htsjdk->adam
- validated set going htsjdk->adam
- no 1000G membership set going htsjdk->adam
- 1000G membership set going htsjdk->adam
- not somatic going htsjdk->adam
- somatic going htsjdk->adam
- no allele count going htsjdk->adam
- single allele count going htsjdk->adam
- multiple allele counts going htsjdk->adam
- no allele frequency going htsjdk->adam
- single allele frequency going htsjdk->adam
- single allele frequency is +Inf going htsjdk->adam
- single allele frequency is -Inf going htsjdk->adam
- multiple allele frequencies going htsjdk->adam
- no CIGAR going htsjdk->adam
- single CIGAR going htsjdk->adam
- multiple CIGARs going htsjdk->adam
- no read depth going htsjdk->adam
- single read depth going htsjdk->adam
- multiple read depths going htsjdk->adam
- no forward read depth going htsjdk->adam
- single forward read depth going htsjdk->adam
- multiple forward read depths going htsjdk->adam
- no reverse read depth going htsjdk->adam
- single reverse read depth going htsjdk->adam
- multiple reverse read depths going htsjdk->adam
- no ancestral allele set adam->htsjdk
- ancestral allele set adam->htsjdk
- no dbsnp membership set adam->htsjdk
- dbsnp membership set adam->htsjdk
- no hapmap2 membership set adam->htsjdk
- hapmap2 membership set adam->htsjdk
- no hapmap3 membership set adam->htsjdk
- hapmap3 membership set adam->htsjdk
- no validated set adam->htsjdk
- validated set adam->htsjdk
- no 1000G membership set adam->htsjdk
- 1000G membership set adam->htsjdk
- no allele count set adam->htsjdk
- allele count set adam->htsjdk
- no allele frequency set adam->htsjdk
- allele frequency set adam->htsjdk
- no cigar set adam->htsjdk
- cigar set adam->htsjdk
- no read depth set adam->htsjdk
- read depth set adam->htsjdk
- read depth without reference read depth
- reference read depth without read depth
- no forward read depth set adam->htsjdk
- forward read depth set adam->htsjdk
- reference forward read depth without forward read depth
- forward read depth without reference forward read depth
- no reverse read depth set adam->htsjdk
- reverse read depth set adam->htsjdk
- reference reverse read depth without reverse read depth
- reverse read depth without reference reverse read depth
- VCF INFO attribute Number=0 Type=Flag adam->htsjdk
- VCF INFO attribute Number=4 Type=Flag adam->htsjdk unsupported, strict !!! IGNORED !!!
- VCF INFO attribute Number=1 Type=Integer adam->htsjdk
- VCF INFO attribute Number=4 Type=Integer adam->htsjdk
- VCF INFO attribute Number=A Type=Integer adam->htsjdk
- VCF INFO attribute Number=R Type=Integer adam->htsjdk
- VCF INFO attribute Number=R Type=String adam->htsjdk
- VCF INFO attribute Number=G Type=String adam->htsjdk not supported
- VCF INFO attribute Number=0 Type=Flag htsjdk->adam
- VCF INFO attribute Number=1 Type=Integer htsjdk->adam
- VCF INFO attribute Number=4 Type=Integer htsjdk->adam
- VCF INFO attribute Number=4 Type=Float htsjdk->adam
- VCF INFO attribute Number=A Type=Integer htsjdk->adam
- VCF INFO attribute Number=R Type=Integer htsjdk->adam
- VCF INFO attribute Number=R Type=String htsjdk->adam
- VCF INFO attribute Number=G Type=String htsjdk->adam not supported
- VCF FORMAT attribute Number=0 Type=Flag adam->htsjdk not supported
- VCF FORMAT attribute Number=1 Type=Integer adam->htsjdk
- VCF FORMAT attribute Number=4 Type=Integer adam->htsjdk
- VCF FORMAT attribute Number=A Type=Integer adam->htsjdk
- VCF FORMAT attribute Number=R Type=Integer adam->htsjdk
- VCF FORMAT attribute Number=R Type=String adam->htsjdk
- VCF FORMAT attribute Number=0 Type=Flag htsjdk->adam is not supported
- VCF FORMAT attribute Number=1 Type=Integer htsjdk->adam
- VCF FORMAT attribute Number=4 Type=Integer htsjdk->adam
- VCF FORMAT attribute Number=4 Type=Float htsjdk->adam
- VCF FORMAT attribute Number=A Type=Integer htsjdk->adam
- VCF FORMAT attribute Number=R Type=Integer htsjdk->adam
- VCF FORMAT attribute Number=R Type=String htsjdk->adam
- VCF FORMAT attribute Number=G Type=String htsjdk->adam
- respect end position for symbolic alts
FastqRecordConverterSuite:
- test read name suffix and index of pair must match
- test parseReadInFastq, read suffix removal
- test parseReadInFastq, read metadata removal
- test parseReadInFastq, read quality shorter than read length, padded with B
- test parseReadInFastq, read quality longer than read length 
- test parseReadInFastq, no read quality
- testing FastqRecordConverter.convertPair with valid input
- testing FastqRecordConverter.convertPair with 7-line invalid input
- testing FastqRecordConverter.convertPair with invalid input: first read length and qual don't match
- testing FastqRecordConverter.convertPair with invalid input: second read length and qual don't match
- testing FastqRecordConverter.convertFragment with valid input
- testing FastqRecordConverter.convertFragment with another valid input having /1, /2 suffixes
- testing FastqRecordConverter.convertFragment with invalid input: different read names
- testing FastqRecordConverter.convertRead with valid input
- testing FastqRecordConverter.convertRead with valid input: setFirstOfPair set to true
- testing FastqRecordConverter.convertRead with valid input: setSecondOfPair set to true
- testing FastqRecordConverter.convertRead with valid input: setFirstOfPair and setSecondOfPair both true
- testing FastqRecordConverter.convertRead with valid input, no qual, strict
- testing FastqRecordConverter.convertRead with valid input, no qual, not strict
AttributeSuite:
- test SAMTagAndValue parsing
- Attributes can be correctly re-encoded as text SAM tags
GFF3HeaderWriterSuite:
- write gff3 header pragma
BinQualitiesSuite:
- make a quality score bin
- can't have a quality score bin with negative score
- can't have a quality score bin with high score below low
- can't have a quality score bin with high score above 255
- can't have a quality score bin with score outside
- make a quality score bin from a string
- quality score bin must have exactly 3 elements
- quality score bin must be integers
- must define at least one bin
- build multiple bins
- rewrite quality scores for a read
- rewriting quality scores fails if bins overlap
- rewriting quality scores fails if base is out of bounds
- skip read if qualities are null
- rewrite a read
IndexedFastaFileSuite:
- correctly generates sequence dictionary from .dict file
- correctly gets sequence
- fails when fai index is not provided
2020-08-06 17:09:52 WARN  IndexedFastaFile:190 - Caught exception java.lang.NullPointerException when loading FASTA sequence dictionary. Using empty dictionary instead.
- passes when dict is not provided and ValidationStringency = LENIENT
SAMRecordConverterSuite:
- testing the fields in an Alignment obtained from a mapped samRecord conversion
- testing the fields in an Alignment obtained from an unmapped samRecord conversion
- '*' quality gets nulled out
- don't keep denormalized fields
ADAMContextSuite:
- ctr is accessible
- load from an empty directory
- sc.loadParquet should not fail on unmapped reads
- sc.loadParquet should not load a file without a type specified
- can read a small .SAM file
- can read a small .SAM file with a bad header with lenient validation
- loading a sam file with a bad header and strict stringency should fail
- can read a small .CRAM file
- can read a small .SAM with all attribute tag types
- can filter a .SAM file based on quality
- Can convert to phred
- Can convert from phred
- Can read a .gtf file
- Can read a .bed file
- Can read a BED 12 file
- Can read a .narrowPeak file
- Can read a .interval_list file
2020-08-06 17:09:55 WARN  VariantContextConverter:190 - Saw invalid info field java.lang.IllegalArgumentException: Multivalued flags are not supported for INFO lines: INFO=<ID=ABADFLAG,Number=.,Type=Flag,Description="A no good, very bad flag.">. Ignoring...
2020-08-06 17:09:55 WARN  VariantContextConverter:190 - Generating field extractor from header line INFO=<ID=ABADFLAG,Number=.,Type=Flag,Description="A no good, very bad flag."> failed: java.lang.IllegalArgumentException: Multivalue flags are not supported for INFO lines: INFO=<ID=ABADFLAG,Number=.,Type=Flag,Description="A no good, very bad flag.">
- can read a small .vcf file with a validation issue
- can read a small .vcf file
2020-08-06 17:09:56 WARN  VCFInputFormat:218 - file:/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/2.12.8/test-classes/test.vcf.gz is not splittable, consider using block-compressed gzip (BGZF)
- can read a gzipped .vcf file
- can read a vcf file with an empty alt
- can read a BGZF gzipped .vcf file with .gz file extension
- can read a BGZF gzipped .vcf file with .bgz file extension
- can read a vcf file with a projection
- can read an uncompressed BCFv2.2 file !!! IGNORED !!!
- can read a BGZF compressed BCFv2.2 file !!! IGNORED !!!
- loadIndexedVcf with 1 ReferenceRegion
- loadIndexedVcf with multiple ReferenceRegions
- load block compressed interleaved fastq
- import records from interleaved FASTQ: 1
- import records from interleaved FASTQ: 2
- import records from interleaved FASTQ: 3
- import records from interleaved FASTQ: 4
- import block compressed single fastq
- import records from single ended FASTQ: 1
- import records from single ended FASTQ: 2
- import records from single ended FASTQ: 3
- import records from single ended FASTQ: 4
- filter on load using the filter2 API
- saveAsParquet with file path
- saveAsParquet with file path, block size, page size
- saveAsParquet with save args
- read a HLA fasta from GRCh38
- read a gzipped fasta file
- read a fasta file with comments, gaps, and translation stops
- loadIndexedBam with 1 ReferenceRegion
- loadIndexedBam with multiple ReferenceRegions
- loadIndexedBam with multiple ReferenceRegions and indexed bams
- loadIndexedBam with multiple ReferenceRegions and a directory of indexed bams
- loadIndexedBam should throw exception without an index file
- loadIndexedBam should work with indexed file with index naming format <filename>.bai
- loadIndexedBam glob should throw exception without an index file
- loadBam with a glob
- loadBam with a directory
- load vcf with a glob
- load vcf from a directory
- load gvcf which contains a multi-allelic row from a directory
- load and save gvcf which contains rows without likelihoods
- parse annotations for multi-allelic rows
- load parquet with globs
- bad glob should fail
- empty directory should fail
- can read a SnpEff-annotated .vcf file
- loadAlignments should not fail on single-end and paired-end fastq reads
- load queryname sorted sam as fragments
- load query grouped sam as fragments
- load paired fastq
- load paired fastq without cache
- load paired fastq as fragments
- load paired fastq as fragments without cache
- load HTSJDK sequence dictionary
- load Bedtools .genome file as sequence dictionary
- load Bedtools .genome.txt file as sequence dictionary
- load UCSC Genome Browser chromInfo.txt file as sequence dictionary
- load unrecognized file extension as sequence dictionary fails
- load BED features with Bedtools .genome file as sequence dictionary
- load BED features with Bedtools .genome file as sequence dictionary, no matching features
- convert program record
- load program record from sam file
- load alignments from data frame
- load features from data frame
- load fragments from data frame
- load genotypes from data frame with default header lines
- load genotypes from data frame with empty header lines
- load reads from data frame
- load sequences from data frame
- load slices from data frame
- load variant contexts from data frame with default header lines
- load variant contexts from data frame with empty header lines
- load variants from data frame with default header lines
- load variants from data frame with empty header lines
- load alignments with metadata from data frame
- load features with metadata from data frame
- load fragments with metadata from data frame
- load genotypes with metadata from data frame
- load variant contexts with metadata from data frame
- load variants with metadata from data frame
- read a fasta file with short sequences as sequences
- read a fasta file with long sequences as sequences
- read a fasta file with short sequences as slices
- read a fasta file with long sequences as slices
CycleCovariateSuite:
- compute covariates for an unpaired read on the negative strand
- compute covariates for a first-of-pair read on the negative strand
- compute covariates for a second-of-pair read on the negative strand
- compute covariates for an unpaired read on the positive strand
- compute covariates for a first-of-pair read on the positive strand
- compute covariates for a second-of-pair read on the positive strand
AlignmentConverterSuite:
- testing the fields in a converted ADAM Read
- converting a read with null quality is OK
- convert a read to fastq
- reverse complement reads when converting to fastq
- converting to fastq with unmapped reads where  read reverse complemented flag (Ox10) was NOT set
- converting to fastq with unmapped reads where reverse complemented flag (0x10) was set
- converting a fragment with no alignments should yield unaligned reads
- converting a fragment with alignments should restore the alignments
- read negative strand is propagated even when not mapped
ConsensusGeneratorFromKnownsSuite:
- no consensuses for empty target
- no consensuses for reads that don't overlap a target
- return a consensus for read overlapping a single target
RichCigarSuite:
- moving 2 bp from a deletion to a match operator
- moving 2 bp from a insertion to a match operator
- moving 1 base in a two element cigar
- move to start of read
- process right clipped cigar
- process left clipped cigar
- process cigar clipped on both ends
MDTaggingSuite:
- test adding MDTags over boundary
- test adding MDTags; reads span full contig
- test adding MDTags; reads start inside first fragment
- test adding MDTags; reads end inside last fragment
- test adding MDTags; reads start inside first fragment and end inside last fragment
- test adding MDTags; reads start and end in middle fragements
2020-08-06 17:10:59 WARN  BlockManager:69 - Putting block rdd_5_3 failed due to exception java.lang.Exception: Contig chr2 not found in reference map with keys: chr1.
2020-08-06 17:10:59 WARN  BlockManager:69 - Block rdd_5_3 could not be removed as it was not found on disk or in memory
2020-08-06 17:10:59 ERROR Executor:94 - Exception in task 3.0 in stage 2.0 (TID 11)
java.lang.Exception: Contig chr2 not found in reference map with keys: chr1
	at org.bdgenomics.adam.util.ReferenceContigMap.$anonfun$extract$1(ReferenceContigMap.scala:64)
	at scala.collection.immutable.Map$Map1.getOrElse(Map.scala:119)
	at org.bdgenomics.adam.util.ReferenceContigMap.extract(ReferenceContigMap.scala:63)
	at org.bdgenomics.adam.rdd.read.MDTagging.$anonfun$addMDTagsBroadcast$3(MDTagging.scala:76)
	at scala.Option$WithFilter.map(Option.scala:163)
	at org.bdgenomics.adam.rdd.read.MDTagging.$anonfun$addMDTagsBroadcast$1(MDTagging.scala:71)
	at scala.collection.Iterator$$anon$10.next(Iterator.scala:459)
	at org.apache.spark.storage.memory.MemoryStore.putIterator(MemoryStore.scala:222)
	at org.apache.spark.storage.memory.MemoryStore.putIteratorAsValues(MemoryStore.scala:299)
	at org.apache.spark.storage.BlockManager.$anonfun$doPutIterator$1(BlockManager.scala:1371)
	at org.apache.spark.storage.BlockManager.org$apache$spark$storage$BlockManager$$doPut(BlockManager.scala:1298)
	at org.apache.spark.storage.BlockManager.doPutIterator(BlockManager.scala:1362)
	at org.apache.spark.storage.BlockManager.getOrElseUpdate(BlockManager.scala:1186)
	at org.apache.spark.rdd.RDD.getOrCompute(RDD.scala:360)
	at org.apache.spark.rdd.RDD.iterator(RDD.scala:311)
	at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90)
	at org.apache.spark.scheduler.Task.run(Task.scala:127)
	at org.apache.spark.executor.Executor$TaskRunner.$anonfun$run$3(Executor.scala:444)
	at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1377)
	at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:447)
	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
	at java.lang.Thread.run(Thread.java:748)
2020-08-06 17:10:59 WARN  TaskSetManager:69 - Lost task 3.0 in stage 2.0 (TID 11, 192.168.10.31, executor driver): java.lang.Exception: Contig chr2 not found in reference map with keys: chr1
	at org.bdgenomics.adam.util.ReferenceContigMap.$anonfun$extract$1(ReferenceContigMap.scala:64)
	at scala.collection.immutable.Map$Map1.getOrElse(Map.scala:119)
	at org.bdgenomics.adam.util.ReferenceContigMap.extract(ReferenceContigMap.scala:63)
	at org.bdgenomics.adam.rdd.read.MDTagging.$anonfun$addMDTagsBroadcast$3(MDTagging.scala:76)
	at scala.Option$WithFilter.map(Option.scala:163)
	at org.bdgenomics.adam.rdd.read.MDTagging.$anonfun$addMDTagsBroadcast$1(MDTagging.scala:71)
	at scala.collection.Iterator$$anon$10.next(Iterator.scala:459)
	at org.apache.spark.storage.memory.MemoryStore.putIterator(MemoryStore.scala:222)
	at org.apache.spark.storage.memory.MemoryStore.putIteratorAsValues(MemoryStore.scala:299)
	at org.apache.spark.storage.BlockManager.$anonfun$doPutIterator$1(BlockManager.scala:1371)
	at org.apache.spark.storage.BlockManager.org$apache$spark$storage$BlockManager$$doPut(BlockManager.scala:1298)
	at org.apache.spark.storage.BlockManager.doPutIterator(BlockManager.scala:1362)
	at org.apache.spark.storage.BlockManager.getOrElseUpdate(BlockManager.scala:1186)
	at org.apache.spark.rdd.RDD.getOrCompute(RDD.scala:360)
	at org.apache.spark.rdd.RDD.iterator(RDD.scala:311)
	at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90)
	at org.apache.spark.scheduler.Task.run(Task.scala:127)
	at org.apache.spark.executor.Executor$TaskRunner.$anonfun$run$3(Executor.scala:444)
	at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1377)
	at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:447)
	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
	at java.lang.Thread.run(Thread.java:748)

2020-08-06 17:10:59 ERROR TaskSetManager:73 - Task 3 in stage 2.0 failed 1 times; aborting job
- try realigning a read on a missing contig, stringency == STRICT
2020-08-06 17:11:00 WARN  MDTagging:190 - Caught exception when processing read chr2: java.lang.Exception: Contig chr2 not found in reference map with keys: chr1
- try realigning a read on a missing contig, stringency == LENIENT
FileExtensionsSuite:
- ends in gzip extension
- is a vcf extension
PhredUtilsSuite:
- convert low phred score to log and back
- convert high phred score to log and back
- convert overflowing phred score to log and back and clip
- convert negative zero log probability to phred and clip
- round trip log probabilities
ReadDatasetSuite:
- create a new read genomic dataset
- create a new read genomic dataset with sequence dictionary
- save as parquet
- round trip as parquet
- save as fastq
- save as single file fastq
- filter read genomic dataset by reference region
- broadcast region join reads and features
- shuffle region join reads and features
- convert reads to alignments
- convert reads to sequences
- convert reads to slices
AlignmentDatasetSuite:
- sorting reads
- unmapped reads go at the end when sorting
- coverage does not fail on unmapped reads
- computes coverage
- computes coverage with multiple samples
- merges adjacent records with equal coverage values
- sorting reads by reference index
- round trip from ADAM to SAM and back to ADAM produces equivalent Read values
- round trip with single CRAM file produces equivalent Read values
- round trip with sharded CRAM file produces equivalent Read values
- SAM conversion sets read mapped flag properly
- load long FASTQ reads
- load FASTQ with no bases
- convert malformed FASTQ (no quality scores) => SAM => well-formed FASTQ => SAM
- round trip from ADAM to FASTQ and back to ADAM produces equivalent Read values
- round trip from ADAM to paired-FASTQ and back to ADAM produces equivalent Read values
- writing a small file with tags should produce the expected result
- writing a small sorted file as SAM should produce the expected result
- writing unordered sam from unordered sam
- writing ordered sam from unordered sam
- write single sam file back
- write single bam file back
- saveAsParquet with save args, sequence dictionary, and read group dictionary
- load parquet to sql, save, re-read from avro
- load from sam, save as partitioned parquet, and re-read from partitioned parquet
- save as SAM format
- save as sorted SAM format
- save as BAM format
- save as sorted BAM format
- save as FASTQ format
- save as ADAM parquet format
- saveAsSam SAM format
- saveAsSam SAM format single file
- saveAsSam sorted SAM format single file
- saveAsSam BAM format
- saveAsSam BAM format single file
- saveAsSam sorted BAM format single file
- saveAsFastq
- saveAsFastq as single file
- saveAsFastq with original base qualities
- saveAsFastq sorted by read name
- saveAsFastq sorted by read name with original base qualities
2020-08-06 17:12:43 WARN  RDDBoundAlignmentDataset:190 - Found 20 read names that don't occur exactly twice:
	1x:	20

Samples:
	simread:1:237728409:true
	simread:1:195211965:false
	simread:1:163841413:false
	simread:1:231911906:false
	simread:1:26472783:false
	simread:1:165341382:true
	simread:1:240344442:true
	simread:1:50683371:false
	simread:1:240997787:true
	simread:1:14397233:false
	simread:1:207027738:true
	simread:1:20101800:true
	simread:1:101556378:false
	simread:1:37577445:false
	simread:1:189606653:true
	simread:1:5469106:true
	simread:1:186794283:true
	simread:1:89554252:false
	simread:1:153978724:false
	simread:1:169801933:true
- saveAsFastq paired FASTQ
2020-08-06 17:12:45 WARN  RDDBoundAlignmentDataset:190 - Found 20 read names that don't occur exactly twice:
	1x:	20

Samples:
	simread:1:237728409:true
	simread:1:195211965:false
	simread:1:163841413:false
	simread:1:231911906:false
	simread:1:26472783:false
	simread:1:165341382:true
	simread:1:240344442:true
	simread:1:50683371:false
	simread:1:240997787:true
	simread:1:14397233:false
	simread:1:207027738:true
	simread:1:20101800:true
	simread:1:101556378:false
	simread:1:37577445:false
	simread:1:189606653:true
	simread:1:5469106:true
	simread:1:186794283:true
	simread:1:89554252:false
	simread:1:153978724:false
	simread:1:169801933:true
- saveAsPairedFastq
2020-08-06 17:12:48 WARN  RDDBoundAlignmentDataset:190 - Found 20 read names that don't occur exactly twice:
	1x:	20

Samples:
	simread:1:237728409:true
	simread:1:195211965:false
	simread:1:163841413:false
	simread:1:231911906:false
	simread:1:26472783:false
	simread:1:165341382:true
	simread:1:240344442:true
	simread:1:50683371:false
	simread:1:240997787:true
	simread:1:14397233:false
	simread:1:207027738:true
	simread:1:20101800:true
	simread:1:101556378:false
	simread:1:37577445:false
	simread:1:189606653:true
	simread:1:5469106:true
	simread:1:186794283:true
	simread:1:89554252:false
	simread:1:153978724:false
	simread:1:169801933:true
- saveAsPairedFastq as single files
- don't lose any reads when piping as SAM
2020-08-06 17:13:01 WARN  OutFormatterRunner:190 - Piped command List(sleep, 10) timed out after 5 seconds.
2020-08-06 17:13:01 WARN  OutFormatterRunner:190 - Piped command List(sleep, 10) timed out after 5 seconds.
- lose all records when a command times out
- lose no records without a timeout
2020-08-06 17:13:24 WARN  OutFormatterRunner:190 - Piped command List(python, /tmp/adamTestMvn1aEve53/spark-5896587d-a48b-4f72-87dd-0774cf40281f/userFiles-1d8821c5-68ea-43e7-890c-1f515823e750/timeout.py) timed out after 5 seconds.
2020-08-06 17:13:24 WARN  OutFormatterRunner:190 - Piped command List(python, /tmp/adamTestMvn1aEve53/spark-5896587d-a48b-4f72-87dd-0774cf40281f/userFiles-1d8821c5-68ea-43e7-890c-1f515823e750/timeout.py) timed out after 5 seconds.
- lose some records when a command times out
- don't lose any reads when piping as SAM using java pipe
- don't lose any reads when piping as BAM
- don't lose any reads when piping fastq to sam
- can properly set environment variables inside of a pipe
- read vcf from alignment pipe !!! IGNORED !!!
- use broadcast join to pull down reads mapped to targets
- use broadcast join against to pull down reads mapped to targets
- use right outer broadcast join to pull down reads mapped to targets
- use right outer broadcast join against to pull down reads mapped to targets
- use shuffle join with feature spanning partitions
- use shuffle join to pull down reads mapped to targets
- use shuffle join with flankSize to pull down reads mapped close to targets
- use right outer shuffle join to pull down reads mapped to targets
- use left outer shuffle join to pull down reads mapped to targets
- use full outer shuffle join to pull down reads mapped to targets
- use shuffle join with group by to pull down reads mapped to targets
- use right outer shuffle join with group by to pull down reads mapped to targets
- cannot provide empty quality score bins
- cannot provide bins with a gap
- cannot provide overlapping bins
- binning quality scores in reads succeeds even if reads have no quality scores
- bin quality scores in reads
- union two read files together
- test k-mer counter
- test dataset based k-mer counter
- transform reads to slice genomic dataset
- transform reads to coverage genomic dataset
- transform reads to feature genomic dataset
- transform reads to fragment genomic dataset
- transform reads to genotype genomic dataset
loading /tmp/adamTestMvn1aEve53/TempSuite5547794471665063014.adam as parquet into RDD...
loading /tmp/adamTestMvn1aEve53/TempSuite1644221934450037331.adam as parquet into RDD...
- transform reads to variant genomic dataset
- cannot have a null processing step ID
- convert a processing description to htsjdk
- GenomicDataset.sort does not fail on unmapped reads
- GenomicDataset.sortLexicographically does not fail on unmapped reads
- left normalize indels
2020-08-06 17:14:39 WARN  DAGScheduler:69 - Broadcasting large task binary with size 1134.2 KiB
- running base recalibration with downsampling doesn't drop reads
- filter RDD bound alignments by MAPQ
- filter dataset bound alignments by MAPQ
- filter RDD bound unaligned alignments
- filter dataset bound unaligned alignments
- filter RDD bound unpaired alignments
- filter dataset bound unpaired alignments
- filter RDD bound duplicate alignments
- filter dataset bound duplicate alignments
- filter RDD bound alignments to primary alignments
- filter dataset bound alignments to primary alignments
- filter RDD bound alignments to read group
- filter dataset bound alignments to read group
- filter RDD bound alignments to read groups
- filter dataset bound alignments to read groups
- filter RDD bound alignments to sample
- filter dataset bound alignments to sample
- filter RDD bound alignments to samples
- filter dataset bound alignments to samples
- sort by read name
- transform dataset via java API
- convert alignments to reads
SmithWatermanSuite:
- gather max position from simple scoring matrix
- gather max position from irregular scoring matrix
- gather max position from irregular scoring matrix with deletions
- score simple alignment with constant gap
- score irregular scoring matrix
- score irregular scoring matrix with indel
- can unroll cigars correctly
- execute simple trackback
- execute trackback with indel
- run end to end smith waterman for simple reads
- run end to end smith waterman for short sequences with indel
- run end to end smith waterman for longer sequences with snp
- run end to end smith waterman for longer sequences with short indel
- run end to end smith waterman for shorter sequence in longer sequence
- run end to end smith waterman for shorter sequence in longer sequence, with indel
- smithWaterman - simple alignment
MdTagSuite:
- null md tag
- zero length md tag
- md tag with non-digit initial value
- md tag invalid base
- md tag, pure insertion
- md tag, pure insertion, test 2
- md tag pure insertion equality
- md tag equality and hashcode
- valid md tags
- get start of read with no mismatches or deletions
- get start of read with no mismatches, but with a deletion at the start
- get start of read with mismatches at the start
- get end of read with no mismatches or deletions
- check that mdtag and rich record return same end
- get end of read with no mismatches, but a deletion at end
- CIGAR with N operator
- CIGAR with multiple N operators
- CIGAR with P operators
- Get correct matches for mdtag with insertion
- Get correct matches for mdtag with mismatches and insertion
- Get correct matches for mdtag with insertion between mismatches
- Get correct matches for mdtag with intron between mismatches
- Get correct matches for mdtag with intron and deletion between mismatches
- Throw exception when number of deleted bases in mdtag disagrees with CIGAR
- Get correct matches for mdtag with mismatch, insertion and deletion
- Get correct matches for mdtag with mismatches, insertion and deletion
- Get correct matches for MDTag with mismatches and deletions
- Get correct matches base from MDTag and CIGAR with N
- get end of read with mismatches and a deletion at end
- get correct string out of mdtag with no mismatches
- get correct string out of mdtag with mismatches at start
- get correct string out of mdtag with deletion at end
- get correct string out of mdtag with mismatches at end
- get correct string out of complex mdtag
- check complex mdtag
- get gapped reference
- move a cigar alignment by two for a read
- rewrite alignment to all matches
- rewrite alignment to two mismatches followed by all matches
- rewrite alignment to include a deletion but otherwise all matches
- rewrite alignment to include an insertion at the start of the read but otherwise all matches
- create new md tag from read vs. reference, perfect match
- create new md tag from read vs. reference, perfect alignment match, 1 mismatch
- create new md tag from read vs. reference, alignment with deletion
- create new md tag from read vs. reference, alignment with insert
- handle '=' and 'X' operators
- CIGAR/MD tag mismatch should cause errors
GenomicDatasetSuite:
- processing a command that is the spark root directory should return an absolute path
- processing a command that is just a single word should do nothing
- processing a command should handle arguments that include spaces
- processing a command that is a single substitution should succeed
- processing a command that is multiple words should split the string
- process a command that is multiple words with a replacement
- process a command that is multiple words with multiple replacements
ParallelFileMergerSuite:
- cannot write both empty gzip block and cram eof
- buffer size must be non-negative
- get the size of several files
- block size must be positive and non-zero when trying to merge files
- must provide files to merge
- if two files are both below the block size, they should merge into one shard
- merge two files where one is greater than the block size
- merge a sharded sam file
- merge a sharded bam file
- merge a sharded cram file
- can't turn a negative index into a path
- generate a path from an index
IndelTableSuite:
- check for indels in a region with known indels
- check for indels in a contig that doesn't exist
- check for indels in a region without known indels
- build indel table from rdd of variants
SnpTableSuite:
- create an empty snp table
- create a snp table from variants on multiple contigs
- create a snp table from a larger set of variants
- perform lookups on multi-contig snp table
- perform lookups on larger snp table
RealignIndelsSuite:
- map reads to targets
- checking mapping to targets for artificial reads
- checking alternative consensus for artificial reads
- checking extraction of reference from reads
- checking realigned reads for artificial input
- checking realigned reads for artificial input with reference file
- checking realigned reads for artificial input using knowns
- checking realigned reads for artificial input using knowns and reads
- skip realigning reads if target is highly covered
- skip realignment if target is an insufficient LOD improvement
- realign reads to an insertion
- test mismatch quality scoring
- test mismatch quality scoring for no mismatches
- test mismatch quality scoring for offset
- test mismatch quality scoring with early exit
- test mismatch quality scoring after unpacking read
- we shouldn't try to realign a region with no target
- we shouldn't try to realign reads with no indel evidence
- test OP and OC tags
- realign a read with an insertion that goes off the end of the read
- if realigning a target doesn't improve the LOD, don't drop reads
- extract seq/qual from a read with no clipped bases
- extract seq/qual from a read with clipped bases at start
- extract seq/qual from a read with clipped bases at end
- if unclip is selected, don't drop base when extracting from a read with clipped bases
- get cigar and coordinates for read that spans indel, no clipped bases
- get cigar and coordinates for read that spans deletion, clipped bases at start
- get cigar and coordinates for read that falls wholly before insertion
- get cigar and coordinates for read that falls wholly after insertion
- get cigar and coordinates for read that falls wholly after deletion
- get cigar and coordinates for read that partially spans insertion, no clipped bases
- get cigar and coordinates for read that partially spans insertion, clipped bases at end
- get cigar and coordinates for read that partially spans insertion, clipped bases both ends
BaseQualityRecalibrationSuite:
2020-08-06 17:15:30 WARN  DAGScheduler:69 - Broadcasting large task binary with size 1134.2 KiB
- BQSR Test Input #1 w/ VCF Sites without caching
2020-08-06 17:15:39 WARN  DAGScheduler:69 - Broadcasting large task binary with size 1134.2 KiB
- BQSR Test Input #1 w/ VCF Sites with caching
2020-08-06 17:15:47 WARN  DAGScheduler:69 - Broadcasting large task binary with size 1134.2 KiB
- BQSR Test Input #1 w/ VCF Sites with serialized caching
DinucCovariateSuite:
- computing dinucleotide pairs for a single base sequence should return (N,N)
- compute dinucleotide pairs for a string of all valid bases
- compute dinucleotide pairs for a string with an N
- compute covariates for a read on the negative strand
- compute covariates for a read on the positive strand
SequenceDictionarySuite:
- Convert from sam sequence record and back
- Convert from SAM sequence dictionary file (with extra fields)
- merge into existing dictionary
- Convert from SAM sequence dictionary and back
- Can retrieve sequence by name
- SequenceDictionary's with same single element are equal
- SequenceDictionary's with same two elements are equals
- SequenceDictionary's with different elements are unequal
- SequenceDictionaries with same elements in different order are compatible
- isCompatible tests equality on overlap
- The addition + works correctly
- The append operation ++ works correctly
- ContainsRefName works correctly for different string types
- Apply on name works correctly for different String types
- convert from sam sequence record and back
- convert from sam sequence dictionary and back
- conversion to sam sequence dictionary has correct sort order
- load sequence dictionary from VCF file
- empty sequence dictionary must be empty
- test filter to reference name
- test filter to reference names
- test filter to reference name by function
GenomicPositionPartitionerSuite:
- partitions the UNMAPPED ReferencePosition into the top partition
- if we do not have a contig for a record, we throw an IAE
- partitioning into N pieces on M total sequence length, where N > M, results in M partitions
- correctly partitions a single dummy sequence into two pieces
- correctly counts cumulative lengths
- correctly partitions positions across two dummy sequences
- test that we can range partition ADAMRecords
- test that we can range partition ADAMRecords indexed by sample
- test that simple partitioning works okay on a reasonable set of ADAMRecords
- test indexed ReferencePosition partitioning works on a set of indexed ADAMRecords
CoverageSuite:
- Convert to coverage from valid Feature
- Convert to coverage from valid Feature with sampleId
- Convert to coverage from Feature with null/empty contigName fails with correct error
- Convert to coverage from Feature with no start/end position fails with correct error
- Convert to coverage from Feature with no score fails with correct error
InnerTreeRegionJoinSuite:
- Ensure same reference regions get passed together
- Overlapping reference regions
- Multiple reference regions do not throw exception
VariantDatasetSuite:
- union two variant genomic datasets together
- round trip to parquet
- save and reload from partitioned parquet
- use broadcast join to pull down variants mapped to targets
- use right outer broadcast join to pull down variants mapped to targets
- use shuffle join to pull down variants mapped to targets
- use right outer shuffle join to pull down variants mapped to targets
- use left outer shuffle join to pull down variants mapped to targets
- use full outer shuffle join to pull down variants mapped to targets
- use shuffle join with group by to pull down variants mapped to targets
- use right outer shuffle join with group by to pull down variants mapped to targets
- convert back to variant contexts
- load parquet to sql, save, re-read from avro
2020-08-06 17:16:12 WARN  DatasetBoundSliceDataset:190 - Saving directly as Parquet from SQL. Options other than compression codec are ignored.
- transform variants to slice genomic dataset
- transform variants to coverage genomic dataset
- transform variants to feature genomic dataset
- transform variants to fragment genomic dataset
- transform variants to read genomic dataset
- transform variants to genotype genomic dataset
- transform variants to variant context genomic dataset
- filter RDD bound variants to filters passed
- filter dataset bound variants to filters passed
- filter RDD bound variants by quality
- filter dataset bound variants by quality
- filter RDD bound variants by read depth
- filter dataset bound variants by read depth
- filter RDD bound variants by reference read depth
- filter dataset bound variants by reference read depth
- filter RDD bound single nucleotide variants
- filter dataset bound single nucleotide variants
- filter RDD bound multiple nucleotide variants
- filter dataset bound multiple nucleotide variants
- filter RDD bound indel variants
- filter dataset bound indel variants
- filter RDD bound variants to single nucleotide variants
- filter dataset bound variants to single nucleotide variants
- filter RDD bound variants to multiple nucleotide variants
- filter dataset bound variants to multiple nucleotide variants
- filter RDD bound variants to indel variants
- filter dataset bound variants to indel variants
- transform dataset via java API
Run completed in 9 minutes, 6 seconds.
Total number of tests run: 1175
Suites: completed 68, aborted 0
Tests: succeeded 1175, failed 0, canceled 0, ignored 5, pending 0
All tests passed.
[INFO] 
[INFO] >>> scoverage-maven-plugin:1.1.1:report (default-cli) > [scoverage]test @ adam-core-spark3_2.12 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-core-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-core-spark3_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-core-spark3_2.12 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/main/scala added.
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/generated-sources/src/main/scala added.
[INFO] 
[INFO] --- exec-maven-plugin:1.5.0:java (generate-scala-products) @ adam-core-spark3_2.12 ---
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] 
[INFO] --- exec-maven-plugin:1.5.0:java (generate-scala-projection-fields) @ adam-core-spark3_2.12 ---
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-core-spark3_2.12 ---
[INFO] Modified 2 of 204 .scala files
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:pre-compile (default-cli) @ adam-core-spark3_2.12 ---
[WARNING] Skipping SCoverage execution - unsupported Scala version "2.12.8"
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-core-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-core-spark3_2.12 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/main/java:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/main/scala:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/generated-sources/src/main/scala:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/generated-sources/annotations:-1: info: compiling
[INFO] Compiling 140 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/2.12.8/classes at 1596759409269
[WARNING] warning: there were 21 deprecation warnings
[WARNING] warning: there were 31 deprecation warnings (since 0.21.0)
[WARNING] warning: there was one deprecation warning (since 1.0.6)
[WARNING] warning: there was one deprecation warning (since 2.11.0)
[WARNING] warning: there were 175 deprecation warnings (since 2.12.0)
[WARNING] warning: there was one deprecation warning (since 2.12.7)
[WARNING] warning: there were 230 deprecation warnings in total; re-run with -deprecation for details
[WARNING] warning: there were 5 feature warnings; re-run with -feature for details
[WARNING] 8 warnings found
[INFO] prepare-compile in 0 s
[INFO] compile in 25 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-core-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:post-compile (default-cli) @ adam-core-spark3_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-core-spark3_2.12 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-core-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 152 resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-core-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-core-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-core-spark3_2.12 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-core-spark3_2.12 ---
Discovery starting.
Discovery completed in 1 second, 869 milliseconds.
Run starting. Expected test count is: 1175
RepairPartitionsSuite:
- don't pull from the first partition
- properly handle pulling from an empty iterator
- gets a single read from the partition if there are no other reads in the pair
- gets all the reads from a pair from the start of a partition
- properly handle dropping from an empty iterator
- don't drop from the first partition
- drop a single read from the partition if there are no other reads in the pair
- drops all the reads from a pair from the start of a partition
- only append to the first partition
- drop a single read from the partition and append read when in the middle
- drop reads from the start and don't append when in the last partition
- can't have more records than number of partitions
- unroll array for broadcast
2020-08-06 17:17:17 WARN  Utils:69 - Your hostname, research-jenkins-worker-09 resolves to a loopback address: 127.0.1.1; using 192.168.10.31 instead (on interface enp4s0f0)
2020-08-06 17:17:17 WARN  Utils:69 - Set SPARK_LOCAL_IP if you need to bind to another address
2020-08-06 17:17:18 WARN  NativeCodeLoader:62 - Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
- move pairs around an rdd
FlagStatSuite:
- Standard FlagStat test
ModPartitionerSuite:
- report number of partitions correctly
- partition a number that is lower than the number of partitions and positive
- partition a number that is greater than the number of partitions and positive
- partition a number that is lower than the number of partitions and negative
- partition a number that is greater than the number of partitions and negative
- fire an exception if input is not an integer
TwoBitFileSuite:
- correctly read sequence from .2bit file
- correctly return masked sequences from .2bit file
- correctly return Ns from .2bit file
- correctly calculates sequence dictionary
NonoverlappingRegionsSuite:
- alternating returns an alternating seq of items
- Single region returns itself
- Two adjacent regions will be merged
- Nonoverlapping regions will all be returned
- Many overlapping regions will all be merged
- ADAMRecords return proper references
ReferencePositionSuite:
- create reference position from mapped read
- create reference position from variant
- create reference position from genotype
- create reference position from variant starting at vcf 0
- create reference position from genotype starting at vcf 0
ConsensusGeneratorFromReadsSuite:
- checking search for consensus list for artificial reads
FragmentConverterSuite:
- build a fragment collector and convert to a read
- if a fragment isn't associated with a contig, don't get a fragment collector
- convert an rdd of discontinuous fragments, all from the same contig
- convert an rdd of contiguous fragments, all from the same contig
- convert an rdd of varied fragments from multiple contigs
FileMergerSuite:
- cannot write both empty gzip block and cram eof
- buffer size must be non-negative
RichAlignmentSuite:
- Unclipped Start
- Unclipped End
- tags contains optional fields
- read overlap unmapped read
- read overlap reference position
- read overlap same position different contig
SingleReadBucketSuite:
- convert unmapped pair to fragment
- convert proper pair to fragment
- convert read pair to fragment with first of pair chimeric read
RecalibrationTableSuite:
- look up quality scores in table
FlankSlicesSuite:
- don't put flanks on non-adjacent slices
- put flanks on adjacent slices
InterleavedFastqInputFormatSuite:
- interleaved FASTQ hadoop reader: interleaved_fastq_sample1.ifq->interleaved_fastq_sample1.ifq.output
- interleaved FASTQ hadoop reader: interleaved_fastq_sample2.ifq->interleaved_fastq_sample2.ifq.output
- interleaved FASTQ hadoop reader: interleaved_fastq_sample3.ifq->interleaved_fastq_sample3.ifq.output
- interleaved FASTQ hadoop reader: interleaved_fastq_sample4.ifq->interleaved_fastq_sample4.ifq.output
- interleaved FASTQ hadoop reader: interleaved_fastq_sample5.ifq->interleaved_fastq_sample5.ifq.output
TreeRegionJoinSuite:
- run a join between data on a single contig
ReferenceRegionSuite:
- cannot create an empty predicate
- parse empty string throws IllegalArgumentException
- parse contigName only string into reference regions
- parse to end strings into reference regions
- parse string into reference regions
- contains(: ReferenceRegion)
- contains(: ReferencePosition)
- merge
- overlaps and covers
- overlapsBy and coversBy
- distance(: ReferenceRegion)
- distance(: ReferencePosition)
- unstrandedDistance
- subtract fails on non-overlapping and non-covering regions
- subtract
- create region from unmapped read fails
- create region from read with null alignment positions fails
- create stranded region from unmapped read fails
- create stranded region from read with null alignment positions fails
- create stranded region from read with null alignment strand fails
- create stranded region from read on forward strand
- create stranded region from read on reverse strand
- create region from mapped read contains read start and end
- validate that adjacent regions can be merged
- validate that non-adjacent regions cannot be merged
- validate that nearby regions can be merged
- validate that non-nearby regions cannot be merged
- compute convex hull of two sets
- region name is sanitized when creating region from read
- intersection fails on non-overlapping regions
- intersection fails when minOverlap is not met
- compute intersection
- overlap tests for oriented reference region
- check the width of a reference region
- make a reference region for a variant or genotype
- make a reference region for a variant or genotype starting at VCF 0
- uniformly pad a reference region
- uniformly pad a reference region into negative coordinate space, ensure non negative start
- unevenly pad a reference region
- unevenly pad a reference region into negative coordinate space, ensure non negative start
- can build an open ended reference region
- can build an open ended reference region with strand
- can build a reference region with an open start position
- can build a reference region with an open start position with strand
- can build a reference region that covers the entirety of a contig
- can build a reference region that covers the entirety of a contig with strand
- convert a genotype and then get the reference region
- create region from feature with null alignment positions fails
- create stranded region from feature with null alignment positions fails
- create stranded region from feature with null alignment strand fails
- create stranded region from feature on forward strand
- create stranded region from feature on reverse strand
CoverageDatasetSuite:
- correctly saves coverage
- can read a bed file to coverage
- correctly filters coverage with predicate
- keeps sample metadata
- can read a bed file with multiple samples to coverage
- correctly flatmaps coverage without aggregated bins
- correctly flatmaps coverage with aggregated bins
- collapses coverage records in one partition
- approximately collapses coverage records in multiple partitions
2020-08-06 17:17:36 WARN  DatasetBoundSliceDataset:190 - Saving directly as Parquet from SQL. Options other than compression codec are ignored.
- transform coverage to slice genomic dataset
- transform coverage to feature genomic dataset
2020-08-06 17:17:38 WARN  package:69 - Truncated the string representation of a plan since it was too large. This behavior can be adjusted by setting 'spark.sql.debug.maxToStringFields'.
- transform coverage to fragment genomic dataset
- transform coverage to read genomic dataset
- transform coverage to genotype genomic dataset
- transform coverage to variant genomic dataset
- transform coverage to variant context genomic dataset
- copy coverage rdd
- copy coverage dataset
- copy coverage rdd without sequence dictionary
- copy coverage dataset without sequence dictionary
- transform dataset via java API
RecalibratorSuite:
- don't replace quality if quality was null
- if no covariates, return alignment
- skip recalibration if base is below quality threshold
- recalibrate changed bases above quality threshold
SliceDatasetSuite:
- create a new slice genomic dataset
- create a new slice genomic dataset with sequence dictionary
- merge slices into a sequence genomic dataset
- save as parquet
- round trip as parquet
- save as fasta
- save as single file fasta
- convert slices to reads
- convert slices to sequences
GenotypeDatasetSuite:
- union two genotype genomic datasets together
- round trip to parquet
- round trip to partitioned parquet
- use broadcast join to pull down genotypes mapped to targets
- use right outer broadcast join to pull down genotypes mapped to targets
- use shuffle join to pull down genotypes mapped to targets
- use right outer shuffle join to pull down genotypes mapped to targets
- use left outer shuffle join to pull down genotypes mapped to targets
- use full outer shuffle join to pull down genotypes mapped to targets
- use shuffle join with group by to pull down genotypes mapped to targets
- use right outer shuffle join with group by to pull down genotypes mapped to targets
- convert back to variant contexts
- load parquet to sql, save, re-read from avro
2020-08-06 17:17:56 WARN  DatasetBoundSliceDataset:190 - Saving directly as Parquet from SQL. Options other than compression codec are ignored.
- transform genotypes to slice genomic dataset
- transform genotypes to coverage genomic dataset
- transform genotypes to feature genomic dataset
- transform genotypes to fragment genomic dataset
- transform genotypes to read genomic dataset
- transform genotypes to variant genomic dataset
- transform genotypes to variant context genomic dataset
- loading genotypes then converting to variants yields same output as loading variants
- filter RDD bound genotypes to genotype filters passed
- filter dataset bound genotypes to genotype filters passed
- filter RDD bound genotypes by genotype quality
- filter dataset bound genotypes by genotype quality
- filter RDD bound genotypes by read depth
- filter dataset bound genotypes by read depth
- filter RDD bound genotypes by alternate read depth
- filter dataset bound genotypes by alternate read depth
- filter RDD bound genotypes by reference read depth
- filter dataset bound genotypes by reference read depth
- filter RDD bound genotypes by sample
- filter dataset bound genotypes by sample
- filter RDD bound genotypes by samples
- filter dataset bound genotypes by samples
- filter RDD bound no call genotypes
- filter dataset no call genotypes
- round trip gVCF END attribute without nested variant annotations rdd bound
- round trip gVCF END attribute without nested variant annotations dataset bound
- round trip gVCF END attribute with nested variant annotations rdd bound
- round trip gVCF END attribute with nested variant annotations dataset bound
- transform dataset via java API
FragmentDatasetSuite:
- don't lose any reads when piping interleaved fastq to sam
- don't lose any reads when piping tab5 to sam
- don't lose any reads when piping tab6 to sam
- use broadcast join to pull down fragments mapped to targets
- use right outer broadcast join to pull down fragments mapped to targets
- use shuffle join to pull down fragments mapped to targets
- use right outer shuffle join to pull down fragments mapped to targets
- use left outer shuffle join to pull down fragments mapped to targets
- use full outer shuffle join to pull down fragments mapped to targets
- use shuffle join with group by to pull down fragments mapped to targets
- use right outer shuffle join with group by to pull down fragments mapped to targets
- bin quality scores in fragments
- union two genomic datasets of fragments together
- load parquet to sql, save, re-read from avro
- transform fragments to slice genomic dataset
- transform fragments to coverage genomic dataset
- transform fragments to feature genomic dataset
- transform fragments to read genomic dataset
- transform fragments to genotype genomic dataset
- transform fragments to variant genomic dataset
- transform fragments to variant context genomic dataset
- paired read names with index sequences in read names can group into fragments
- interleaved paired read names with index sequences in read names can group into fragments
- interleaved paired read names with index sequences in read names as fragments
- transform dataset via java API
- dataset and rdd conversion to alignments are equivalent
SingleFastqInputFormatSuite:
- FASTQ hadoop reader: fastq_sample1.fq->single_fastq_sample1.fq.output
- FASTQ hadoop reader: fastq_sample2.fq->single_fastq_sample2.fq.output
- FASTQ hadoop reader: fastq_sample3.fq->single_fastq_sample3.fq.output
- FASTQ hadoop reader: fastq_sample4.fq->single_fastq_sample4.fq.output
VariantContextDatasetSuite:
- load a gvcf with a missing info field set to .
- union two variant context genomic datasets together
- can write, then read in .vcf file
- can write as a single file via simple saveAsVcf method, then read in .vcf file
2020-08-06 17:18:30 WARN  Utils:69 - Service 'sparkDriver' could not bind on port 51158. Attempting port 51159.
- can write as a single file via full saveAsVcf method, then read in .vcf file
- transform a vcf file with bad header
- read a vcf file with multi-allelic variants to split
- support VCFs with +Inf/-Inf float values
- support VCFs with `nan` instead of `NaN` float values
- don't lose any variants when piping as VCF
- pipe works with empty partitions
- don't lose any non-default VCF header lines or attributes when piping as VCF
- save a file sorted by contig index
- save a lexicographically sorted file
- save a multiallelic gvcf !!! IGNORED !!!
- test metadata
- save sharded bgzip vcf
- save bgzip vcf as single file
- can't save file with non-vcf extension
- transform variant contexts to slice genomic dataset
- transform variant contexts to coverage genomic dataset
- transform variant contexts to feature genomic dataset
- transform variant contexts to fragment genomic dataset
- transform variant contexts to read genomic dataset
- transform variant contexts to genotype genomic dataset
- transform variant contexts to variant genomic dataset
- save and reload from partitioned parquet
- transform dataset via java API
ConsensusSuite:
- test the insertion of a consensus insertion into a reference
- test the insertion of a consensus deletion into a reference
- inserting empty consensus returns the reference
SequenceDatasetSuite:
- create a new sequence genomic dataset
- create a new sequence genomic dataset with sequence dictionary
- save as parquet
- round trip as parquet
- save as fasta
- save as single file fasta
- convert sequences to reads
- convert sequences to slices
- slice sequences to a maximum length
- slice sequences shorter than maximum length
- filter sequences by overlapping region
- filter sequences failing to overlap region
- filter sequences by overlapping regions
- filter sequences failing to overlap regions
- slice sequences overlapping a smaller region
- slice sequences overlapping a larger region
- slice sequences failing to overlap a region
- slice sequences overlapping smaller regions
- slice sequences overlapping larger regions
- slice sequences failing to overlap regions
AttributeUtilsSuite:
- parseTags returns a reasonable set of tagStrings
- parseTags works with NumericSequence tagType
- empty string is parsed as zero tagStrings
- incorrectly formatted tag throws an exception
- string tag with a ':' in it is correctly parsed
- oq string tag with many ':' in it is correctly parsed
- oq string tag with a ',' in it is correctly parsed
- if a tag is an array but doesn't define it's format, throw
MarkDuplicatesSuite:
- single read
- reads at different positions
- reads at the same position
- reads at the same position with clipping
- reads on reverse strand
- unmapped reads
- read pairs
- read pairs with fragments
- quality scores
- read pairs that cross chromosomes
- single fragment
- fragments at different positions
- fragments at the same position
- fragments at the same position with clipping
- fragments on reverse strand
- unmapped fragments
- read pairs as fragments
- read pairs with fragments as fragments
- chimeric fragments
- inverse pairs
- supplemental reads
TranscriptEffectConverterSuite:
- parse empty transcript effect
- parse empty transcript effect strict validation stringency
- parse invalid transcript effect
- parse invalid transcript effect strict validation stringency
- parse transcript effect
- parse empty list VCF ANN attribute
- parse empty list VCF ANN attribute strict validation stringency
- parse empty string VCF ANN attribute
- parse empty string VCF ANN attribute strict validation stringency
- parse invalid VCF ANN attribute
- parse invalid VCF ANN attribute strict validation stringency
- parse VCF ANN attribute with one transcript effect
- parse VCF ANN attribute with multiple transcript effects
- convert to transcript effect from null VCF ANN attribute in variant context
- convert to transcript effect from empty list VCF ANN attribute in variant context
- convert to transcript effect from empty list VCF ANN attribute in variant context strict validation stringency
- convert to transcript effect from empty string VCF ANN attribute in variant context
- convert to transcript effect from empty string VCF ANN attribute in variant context strict validation stringency
- convert to transcript effect from invalid VCF ANN attribute in variant context
- convert to transcript effect from invalid VCF ANN attribute in variant context strict validation stringency
2020-08-06 17:18:49 WARN  TranscriptEffectConverter$:190 - Could not convert VCF INFO reserved key ANN value to TranscriptEffect, caught java.lang.NumberFormatException: For input string: "not a number".
- convert to transcript effect from VCF ANN attribute with invalid number in variant context lenient validation stringency
2020-08-06 17:18:49 WARN  TranscriptEffectConverter$:190 - Could not convert VCF INFO reserved key ANN value to TranscriptEffect, caught java.lang.NumberFormatException: For input string: "not a number".
- convert to transcript effect from VCF ANN attribute with invalid fraction in variant context lenient validation stringency
- convert to transcript effect from VCF ANN attribute with invalid number in variant context strict validation stringency
- convert to transcript effect from VCF ANN attribute with invalid fraction in variant context strict validation stringency
- convert to transcript effect from VCF ANN attribute in variant context different alt allele
- convert to transcript effect from VCF ANN attribute in variant context same alt allele
- convert to transcript effect from VCF ANN attribute in variant context multiple effects same alt allele
- convert transcript effect to VCF ANN attribute value
- convert transcript effect with null fields to VCF ANN attribute value
2020-08-06 17:18:49 WARN  TranscriptEffectConverter$:190 - Incorrect fractional value ?/2, missing numerator
- convert transcript effect with incorrect fractional value to VCF ANN attribute value
IndelRealignmentTargetSuite:
- checking simple realignment target
- creating simple target from read with deletion
- creating simple target from read with insertion
- joining simple realignment targets on same chr
- joining simple realignment targets on different chr throws exception
- creating targets from three intersecting reads, same indel
- creating targets from three intersecting reads, two different indel
- creating targets from two disjoint reads
- creating targets for artificial reads: one-by-one
- creating targets for artificial reads: all-at-once (merged)
- creating indel targets for mason reads
- additional indel targets taken from consensus generator
NormalizationUtilsSuite:
- cannot move an indel left if there are no bases to it's left
- move a simple indel to farthest position left until bases run out
- move a simple indel to farthest position left, past length of indel
- cannot move a left normalized indel in a short tandem repeat
- move an indel in a short tandem repeat
- move an indel in a short tandem repeat of more than 2 bases, where shift is not an integer multiple of repeated sequence length
- moving a simple read with single deletion that cannot shift
- shift an indel left by 0 in a cigar
- shift an indel left by 1 in a cigar
- do not left align a complex read which is already left aligned
ReadGroupDictionarySuite:
- simple conversion to and from sam read group
- sample name must be set
- simple equality checks
- get samples from read group dictionary
- empty read group is empty
- merging a dictionary with itself should work
- round trip a record with all attributes set
RightOuterTreeRegionJoinSuite:
- Ensure same reference regions get passed together
- Overlapping reference regions
InnerShuffleRegionJoinSuite:
- Overlapping reference regions
- Multiple reference regions do not throw exception
FeatureDatasetSuite:
- round trip GTF format
- save GTF as GFF3 format
- save GTF as BED format
- save GTF as IntervalList format
- save GTF as NarrowPeak format
- save GFF3 as GTF format
- save GFF3 as BED format
- save GFF3 as IntervalList format
- save GFF3 as NarrowPeak format
- round trip GFF3 format
- ignore FASTA sequence in GFF3 file
- save BED as GTF format
- save BED as GFF3 format
- save BED as IntervalList format
- save BED as NarrowPeak format
- round trip BED6 format
- keeps sample metadata
- round trip BED12 format
- save to UCSC BED format
- save IntervalList as GTF format
- save IntervalList as GFF3 format
- save IntervalList as BED format
- save IntervalList as IntervalList format
- save IntervalList as NarrowPeak format
- round trip IntervalList format
- save NarrowPeak as GTF format
- save NarrowPeak as GFF3 format
- save NarrowPeak as BED format
- save NarrowPeak as IntervalList format
- save NarrowPeak as NarrowPeak format
- round trip NarrowPeak format
- sort by reference
- sort by reference and feature fields
- sort gene features by reference and gene structure
- sort transcript features by reference and gene structure
- sort exon features by reference and gene structure
- sort intron features by reference and gene structure
- correctly flatmaps CoverageDataset from FeatureDataset
- use broadcast join to pull down features mapped to targets
- use right outer broadcast join to pull down features mapped to targets
- use shuffle join to pull down features mapped to targets
- use right outer shuffle join to pull down features mapped to targets
- use left outer shuffle join to pull down features mapped to targets
- use full outer shuffle join to pull down features mapped to targets
- use shuffle join with group by to pull down features mapped to targets
- use right outer shuffle join with group by to pull down features mapped to targets
- union two feature rdds together
- obtain sequence dictionary contig lengths from header in IntervalList format
- don't lose any features when piping as BED format
- don't lose any features when piping as GTF format
- don't lose any features when piping as GFF3 format
- don't lose any features when piping as NarrowPeak format
- load parquet to sql, save, re-read from avro
- load partitioned parquet to sql, save, re-read from avro
2020-08-06 17:19:12 WARN  DatasetBoundSliceDataset:190 - Saving directly as Parquet from SQL. Options other than compression codec are ignored.
- transform features to slice genomic dataset
- transform features to coverage genomic dataset
- transform features to fragment genomic dataset
- transform features to read genomic dataset
- transform features to genotype genomic dataset
- transform features to variant genomic dataset
- transform features to variant context genomic dataset
- filter RDD bound features by feature type
- filter dataset bound features by feature type
- filter RDD bound features by feature types
- filter dataset bound features by feature types
- filter RDD bound features by gene
- filter dataset bound features by gene
- filter RDD bound features by genes
- filter dataset bound features by genes
- filter RDD bound features by transcript
- filter dataset bound features by transcript
- filter RDD bound features by transcripts
- filter dataset bound features by transcripts
- filter RDD bound features by exon
- filter dataset bound features by exon
- filter RDD bound features by exons
- filter dataset bound features by exons
- filter RDD bound features by score
- filter dataset bound features by score
- filter RDD bound features by parent
- filter dataset bound features by parent
- filter RDD bound features by parents
- filter dataset bound features by parents
- filter RDD bound features by attribute
- filter dataset bound features by attribute
- transform dataset via java API
AlphabetSuite:
- test size of a case-sensitive alphabet
- test apply of a case-sensitive alphabet
- test reverse complement of a case-sensitive alphabet
- test exact reverse complement of a case-sensitive alphabet
- test size of a case-insensitive alphabet
- test apply of a case-insensitive alphabet
- test reverse complement of a case-insensitive alphabet
- test exact reverse complement of a case-insensitive alphabet
- DNA alphabet
- map unknown bases to N
SortedGenomicDatasetSuite:
- testing that partition and sort provide correct outputs
- testing copartition maintains or adds sort
- testing that we don't drop any data on the right side even though it doesn't map to a partition on the left
- testing that sorted shuffleRegionJoin matches unsorted
- testing that sorted fullOuterShuffleRegionJoin matches unsorted
- testing that sorted rightOuterShuffleRegionJoin matches unsorted
- testing that sorted leftOuterShuffleRegionJoin matches unsorted
- testing that we can persist the sorted knowledge
VariantContextConverterSuite:
- Convert htsjdk site-only SNV to ADAM
- Convert somatic htsjdk site-only SNV to ADAM
- Convert htsjdk site-only CNV to ADAM
- Convert htsjdk SNV w/ genotypes w/ phase information to ADAM
- Convert htsjdk SNV with different variant filters to ADAM
- Convert htsjdk SNV with different genotype filters to ADAM
- Convert ADAM site-only SNV to htsjdk
- Convert ADAM SNV w/ genotypes to htsjdk
- Convert ADAM SNV w/ genotypes but bad SB to htsjdk with strict validation
2020-08-06 17:19:27 WARN  VariantContextConverter:190 - Applying annotation extraction function org.bdgenomics.adam.converters.VariantContextConverter$$Lambda$694/711112124@273ff8bf to {"variant": {"referenceName": "1", "start": 0, "end": 1, "names": [], "splitFromMultiAllelic": false, "referenceAllele": "A", "alternateAllele": "T", "quality": null, "filtersApplied": null, "filtersPassed": null, "filtersFailed": [], "annotation": null}, "referenceName": null, "start": null, "end": null, "variantCallingAnnotations": {"filtersApplied": null, "filtersPassed": null, "filtersFailed": [], "downsampled": null, "baseQRankSum": null, "fisherStrandBiasPValue": 3.0, "rmsMapQ": 0.0, "mapq0Reads": 5, "mqRankSum": null, "readPositionRankSum": null, "genotypePriors": [], "genotypePosteriors": [], "vqslod": null, "culprit": null, "attributes": {}}, "sampleId": "NA12878", "sampleDescription": null, "processingDescription": null, "alleles": ["REF", "ALT"], "expectedAlleleDosage": null, "referenceReadDepth": null, "alternateReadDepth": null, "readDepth": null, "minReadDepth": null, "genotypeQuality": null, "genotypeLikelihoods": [], "nonReferenceLikelihoods": [], "strandBiasComponents": [0, 2], "splitFromMultiAllelic": false, "phased": false, "phaseSetId": null, "phaseQuality": null} failed with java.lang.IllegalArgumentException: requirement failed: Illegal strand bias components length. Must be empty or 4. In:
- Convert ADAM SNV w/ genotypes but bad SB to htsjdk with lenient validation
{"variant": {"referenceName": "1", "start": 0, "end": 1, "names": [], "splitFromMultiAllelic": false, "referenceAllele": "A", "alternateAllele": "T", "quality": null, "filtersApplied": null, "filtersPassed": null, "filtersFailed": [], "annotation": null}, "referenceName": null, "start": null, "end": null, "variantCallingAnnotations": {"filtersApplied": null, "filtersPassed": null, "filtersFailed": [], "downsampled": null, "baseQRankSum": null, "fisherStrandBiasPValue": 3.0, "rmsMapQ": 0.0, "mapq0Reads": 5, "mqRankSum": null, "readPositionRankSum": null, "genotypePriors": [], "genotypePosteriors": [], "vqslod": null, "culprit": null, "attributes": {}}, "sampleId": "NA12878", "sampleDescription": null, "processingDescription": null, "alleles": ["REF", "ALT"], "expectedAlleleDosage": null, "referenceReadDepth": null, "alternateReadDepth": null, "readDepth": null, "minReadDepth": null, "genotypeQuality": null, "genotypeLikelihoods": [], "nonReferenceLikelihoods": [], "strandBiasComponents": [0, 2], "splitFromMultiAllelic": false, "phased": false, "phaseSetId": null, "phaseQuality": null}.
- Convert htsjdk multi-allelic sites-only SNVs to ADAM
- Convert htsjdk multi-allelic SNVs to ADAM and back to htsjdk
- Convert gVCF reference records to ADAM
- Convert htsjdk variant context with no IDs to ADAM
- Convert htsjdk variant context with one ID to ADAM
- Convert htsjdk variant context with multiple IDs to ADAM
- Convert ADAM variant context with no names to htsjdk
- Convert ADAM variant context with one name to htsjdk
- Convert ADAM variant context with multiple names to htsjdk
- Convert ADAM variant context with null filters applied to htsjdk
- Convert ADAM variant context with no filters applied to htsjdk
- Convert ADAM variant context with passing filters to htsjdk
- Convert ADAM variant context with failing filters to htsjdk
- no phasing set going htsjdk->adam
- phased but no phase set info going htsjdk->adam
- set phase set and extract going htsjdk->adam
- no allelic depth going htsjdk->adam
- set allelic depth going htsjdk->adam
- no gt read depth going htsjdk->adam
- extract gt read depth going htsjdk->adam
- no min gt read depth going htsjdk->adam
- extract min gt read depth going htsjdk->adam
- no genotype quality going htsjdk->adam
- extract genotype quality going htsjdk->adam
- no phred likelihood going htsjdk->adam
- extract phred likelihoods going htsjdk->adam
- no strand bias info going htsjdk->adam
- extract strand bias info going htsjdk->adam
- no filters going htsjdk->adam
- filters passed going htsjdk->adam
- extract single filter going htsjdk->adam
- extract multiple filters going htsjdk->adam
- no fisher strand bias going htsjdk->adam
- extract fisher strand bias going htsjdk->adam
- no rms mapping quality going htsjdk->adam
- extract rms mapping quality going htsjdk->adam
- no mq0 going htsjdk->adam
- extract mq0 going htsjdk->adam
- no gt read depth going adam->htsjdk
- extract gt read depth going adam->htsjdk
- throw iae if missing one component of gt read depth going adam->htsjdk
- no depth going adam->htsjdk
- extract depth going adam->htsjdk
- no min depth going adam->htsjdk
- extract min depth going adam->htsjdk
- no quality going adam->htsjdk
- extract quality going adam->htsjdk
- no genotype likelihoods going adam->htsjdk
- extract genotype likelihoods going adam->htsjdk
- no strand bias going adam->htsjdk
- malformed strand bias going adam->htsjdk
- extract strand bias going adam->htsjdk
- no phasing info going adam->htsjdk
- unphased going adam->htsjdk
- phased but no ps/pq going adam->htsjdk
- phased but no pq going adam->htsjdk
- phased but no ps going adam->htsjdk
- phased going adam->htsjdk
- no filter info going adam->htsjdk
- if filters applied, must set passed/failed going adam->htsjdk
- filters passed going adam->htsjdk
- if filters failed, must set filters failed going adam->htsjdk
- single filter failed going adam->htsjdk
- multiple filters failed going adam->htsjdk
- no fisher strand bias going adam->htsjdk
- extract fisher strand bias going adam->htsjdk
- no rms mapping quality going adam->htsjdk
- extract rms mapping quality going adam->htsjdk
- no mapping quality 0 reads going adam->htsjdk
- extract mapping quality 0 reads going adam->htsjdk
- no names set going htsjdk->adam
- single name set going htsjdk->adam
- multiple names set going htsjdk->adam
- no quality going htsjdk->adam
- quality set going htsjdk->adam
- no filters applied going htsjdk->adam
- filters applied and passed going htsjdk->adam
- single filter applied and failed going htsjdk->adam
- multiple filters applied and failed going htsjdk->adam
- no names set adam->htsjdk
- set a single name adam->htsjdk
- set multiple names adam->htsjdk
- no qual set adam->htsjdk
- qual is set adam->htsjdk
- no filters applied adam->htsjdk
- null filters applied adam->htsjdk
- filters passed adam->htsjdk
- if filter failed, must have filters adam->htsjdk
- single filter failed adam->htsjdk
- multiple filters failed adam->htsjdk
- no ancestral allele set going htsjdk->adam
- ancestral allele set going htsjdk->adam
- no dbsnp membership set going htsjdk->adam
- dbsnp membership set going htsjdk->adam
- no hapmap2 membership set going htsjdk->adam
- hapmap2 membership set going htsjdk->adam
- no hapmap3 membership set going htsjdk->adam
- hapmap3 membership set going htsjdk->adam
- no validated set going htsjdk->adam
- validated set going htsjdk->adam
- no 1000G membership set going htsjdk->adam
- 1000G membership set going htsjdk->adam
- not somatic going htsjdk->adam
- somatic going htsjdk->adam
- no allele count going htsjdk->adam
- single allele count going htsjdk->adam
- multiple allele counts going htsjdk->adam
- no allele frequency going htsjdk->adam
- single allele frequency going htsjdk->adam
- single allele frequency is +Inf going htsjdk->adam
- single allele frequency is -Inf going htsjdk->adam
- multiple allele frequencies going htsjdk->adam
- no CIGAR going htsjdk->adam
- single CIGAR going htsjdk->adam
- multiple CIGARs going htsjdk->adam
- no read depth going htsjdk->adam
- single read depth going htsjdk->adam
- multiple read depths going htsjdk->adam
- no forward read depth going htsjdk->adam
- single forward read depth going htsjdk->adam
- multiple forward read depths going htsjdk->adam
- no reverse read depth going htsjdk->adam
- single reverse read depth going htsjdk->adam
- multiple reverse read depths going htsjdk->adam
- no ancestral allele set adam->htsjdk
- ancestral allele set adam->htsjdk
- no dbsnp membership set adam->htsjdk
- dbsnp membership set adam->htsjdk
- no hapmap2 membership set adam->htsjdk
- hapmap2 membership set adam->htsjdk
- no hapmap3 membership set adam->htsjdk
- hapmap3 membership set adam->htsjdk
- no validated set adam->htsjdk
- validated set adam->htsjdk
- no 1000G membership set adam->htsjdk
- 1000G membership set adam->htsjdk
- no allele count set adam->htsjdk
- allele count set adam->htsjdk
- no allele frequency set adam->htsjdk
- allele frequency set adam->htsjdk
- no cigar set adam->htsjdk
- cigar set adam->htsjdk
- no read depth set adam->htsjdk
- read depth set adam->htsjdk
- read depth without reference read depth
- reference read depth without read depth
- no forward read depth set adam->htsjdk
- forward read depth set adam->htsjdk
- reference forward read depth without forward read depth
- forward read depth without reference forward read depth
- no reverse read depth set adam->htsjdk
- reverse read depth set adam->htsjdk
- reference reverse read depth without reverse read depth
- reverse read depth without reference reverse read depth
- VCF INFO attribute Number=0 Type=Flag adam->htsjdk
- VCF INFO attribute Number=4 Type=Flag adam->htsjdk unsupported, strict !!! IGNORED !!!
- VCF INFO attribute Number=1 Type=Integer adam->htsjdk
- VCF INFO attribute Number=4 Type=Integer adam->htsjdk
- VCF INFO attribute Number=A Type=Integer adam->htsjdk
- VCF INFO attribute Number=R Type=Integer adam->htsjdk
- VCF INFO attribute Number=R Type=String adam->htsjdk
- VCF INFO attribute Number=G Type=String adam->htsjdk not supported
- VCF INFO attribute Number=0 Type=Flag htsjdk->adam
- VCF INFO attribute Number=1 Type=Integer htsjdk->adam
- VCF INFO attribute Number=4 Type=Integer htsjdk->adam
- VCF INFO attribute Number=4 Type=Float htsjdk->adam
- VCF INFO attribute Number=A Type=Integer htsjdk->adam
- VCF INFO attribute Number=R Type=Integer htsjdk->adam
- VCF INFO attribute Number=R Type=String htsjdk->adam
- VCF INFO attribute Number=G Type=String htsjdk->adam not supported
- VCF FORMAT attribute Number=0 Type=Flag adam->htsjdk not supported
- VCF FORMAT attribute Number=1 Type=Integer adam->htsjdk
- VCF FORMAT attribute Number=4 Type=Integer adam->htsjdk
- VCF FORMAT attribute Number=A Type=Integer adam->htsjdk
- VCF FORMAT attribute Number=R Type=Integer adam->htsjdk
- VCF FORMAT attribute Number=R Type=String adam->htsjdk
- VCF FORMAT attribute Number=0 Type=Flag htsjdk->adam is not supported
- VCF FORMAT attribute Number=1 Type=Integer htsjdk->adam
- VCF FORMAT attribute Number=4 Type=Integer htsjdk->adam
- VCF FORMAT attribute Number=4 Type=Float htsjdk->adam
- VCF FORMAT attribute Number=A Type=Integer htsjdk->adam
- VCF FORMAT attribute Number=R Type=Integer htsjdk->adam
- VCF FORMAT attribute Number=R Type=String htsjdk->adam
- VCF FORMAT attribute Number=G Type=String htsjdk->adam
- respect end position for symbolic alts
FastqRecordConverterSuite:
- test read name suffix and index of pair must match
- test parseReadInFastq, read suffix removal
- test parseReadInFastq, read metadata removal
- test parseReadInFastq, read quality shorter than read length, padded with B
- test parseReadInFastq, read quality longer than read length 
- test parseReadInFastq, no read quality
- testing FastqRecordConverter.convertPair with valid input
- testing FastqRecordConverter.convertPair with 7-line invalid input
- testing FastqRecordConverter.convertPair with invalid input: first read length and qual don't match
- testing FastqRecordConverter.convertPair with invalid input: second read length and qual don't match
- testing FastqRecordConverter.convertFragment with valid input
- testing FastqRecordConverter.convertFragment with another valid input having /1, /2 suffixes
- testing FastqRecordConverter.convertFragment with invalid input: different read names
- testing FastqRecordConverter.convertRead with valid input
- testing FastqRecordConverter.convertRead with valid input: setFirstOfPair set to true
- testing FastqRecordConverter.convertRead with valid input: setSecondOfPair set to true
- testing FastqRecordConverter.convertRead with valid input: setFirstOfPair and setSecondOfPair both true
- testing FastqRecordConverter.convertRead with valid input, no qual, strict
- testing FastqRecordConverter.convertRead with valid input, no qual, not strict
AttributeSuite:
- test SAMTagAndValue parsing
- Attributes can be correctly re-encoded as text SAM tags
GFF3HeaderWriterSuite:
- write gff3 header pragma
BinQualitiesSuite:
- make a quality score bin
- can't have a quality score bin with negative score
- can't have a quality score bin with high score below low
- can't have a quality score bin with high score above 255
- can't have a quality score bin with score outside
- make a quality score bin from a string
- quality score bin must have exactly 3 elements
- quality score bin must be integers
- must define at least one bin
- build multiple bins
- rewrite quality scores for a read
- rewriting quality scores fails if bins overlap
- rewriting quality scores fails if base is out of bounds
- skip read if qualities are null
- rewrite a read
IndexedFastaFileSuite:
- correctly generates sequence dictionary from .dict file
- correctly gets sequence
- fails when fai index is not provided
2020-08-06 17:19:28 WARN  IndexedFastaFile:190 - Caught exception java.lang.NullPointerException when loading FASTA sequence dictionary. Using empty dictionary instead.
- passes when dict is not provided and ValidationStringency = LENIENT
SAMRecordConverterSuite:
- testing the fields in an Alignment obtained from a mapped samRecord conversion
- testing the fields in an Alignment obtained from an unmapped samRecord conversion
- '*' quality gets nulled out
- don't keep denormalized fields
ADAMContextSuite:
- ctr is accessible
- load from an empty directory
- sc.loadParquet should not fail on unmapped reads
- sc.loadParquet should not load a file without a type specified
- can read a small .SAM file
- can read a small .SAM file with a bad header with lenient validation
- loading a sam file with a bad header and strict stringency should fail
- can read a small .CRAM file
- can read a small .SAM with all attribute tag types
- can filter a .SAM file based on quality
- Can convert to phred
- Can convert from phred
- Can read a .gtf file
- Can read a .bed file
- Can read a BED 12 file
- Can read a .narrowPeak file
- Can read a .interval_list file
2020-08-06 17:19:31 WARN  VariantContextConverter:190 - Saw invalid info field java.lang.IllegalArgumentException: Multivalued flags are not supported for INFO lines: INFO=<ID=ABADFLAG,Number=.,Type=Flag,Description="A no good, very bad flag.">. Ignoring...
2020-08-06 17:19:31 WARN  VariantContextConverter:190 - Generating field extractor from header line INFO=<ID=ABADFLAG,Number=.,Type=Flag,Description="A no good, very bad flag."> failed: java.lang.IllegalArgumentException: Multivalue flags are not supported for INFO lines: INFO=<ID=ABADFLAG,Number=.,Type=Flag,Description="A no good, very bad flag.">
- can read a small .vcf file with a validation issue
- can read a small .vcf file
2020-08-06 17:19:32 WARN  VCFInputFormat:218 - file:/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/2.12.8/test-classes/test.vcf.gz is not splittable, consider using block-compressed gzip (BGZF)
- can read a gzipped .vcf file
- can read a vcf file with an empty alt
- can read a BGZF gzipped .vcf file with .gz file extension
- can read a BGZF gzipped .vcf file with .bgz file extension
- can read a vcf file with a projection
- can read an uncompressed BCFv2.2 file !!! IGNORED !!!
- can read a BGZF compressed BCFv2.2 file !!! IGNORED !!!
- loadIndexedVcf with 1 ReferenceRegion
- loadIndexedVcf with multiple ReferenceRegions
- load block compressed interleaved fastq
- import records from interleaved FASTQ: 1
- import records from interleaved FASTQ: 2
- import records from interleaved FASTQ: 3
- import records from interleaved FASTQ: 4
- import block compressed single fastq
- import records from single ended FASTQ: 1
- import records from single ended FASTQ: 2
- import records from single ended FASTQ: 3
- import records from single ended FASTQ: 4
- filter on load using the filter2 API
- saveAsParquet with file path
- saveAsParquet with file path, block size, page size
- saveAsParquet with save args
- read a HLA fasta from GRCh38
- read a gzipped fasta file
- read a fasta file with comments, gaps, and translation stops
- loadIndexedBam with 1 ReferenceRegion
- loadIndexedBam with multiple ReferenceRegions
- loadIndexedBam with multiple ReferenceRegions and indexed bams
- loadIndexedBam with multiple ReferenceRegions and a directory of indexed bams
- loadIndexedBam should throw exception without an index file
- loadIndexedBam should work with indexed file with index naming format <filename>.bai
- loadIndexedBam glob should throw exception without an index file
- loadBam with a glob
- loadBam with a directory
- load vcf with a glob
- load vcf from a directory
- load gvcf which contains a multi-allelic row from a directory
- load and save gvcf which contains rows without likelihoods
- parse annotations for multi-allelic rows
- load parquet with globs
- bad glob should fail
- empty directory should fail
- can read a SnpEff-annotated .vcf file
- loadAlignments should not fail on single-end and paired-end fastq reads
- load queryname sorted sam as fragments
- load query grouped sam as fragments
- load paired fastq
- load paired fastq without cache
- load paired fastq as fragments
- load paired fastq as fragments without cache
- load HTSJDK sequence dictionary
- load Bedtools .genome file as sequence dictionary
- load Bedtools .genome.txt file as sequence dictionary
- load UCSC Genome Browser chromInfo.txt file as sequence dictionary
- load unrecognized file extension as sequence dictionary fails
- load BED features with Bedtools .genome file as sequence dictionary
- load BED features with Bedtools .genome file as sequence dictionary, no matching features
- convert program record
- load program record from sam file
- load alignments from data frame
- load features from data frame
- load fragments from data frame
- load genotypes from data frame with default header lines
- load genotypes from data frame with empty header lines
- load reads from data frame
- load sequences from data frame
- load slices from data frame
- load variant contexts from data frame with default header lines
- load variant contexts from data frame with empty header lines
- load variants from data frame with default header lines
- load variants from data frame with empty header lines
- load alignments with metadata from data frame
- load features with metadata from data frame
- load fragments with metadata from data frame
- load genotypes with metadata from data frame
- load variant contexts with metadata from data frame
- load variants with metadata from data frame
- read a fasta file with short sequences as sequences
- read a fasta file with long sequences as sequences
- read a fasta file with short sequences as slices
- read a fasta file with long sequences as slices
CycleCovariateSuite:
- compute covariates for an unpaired read on the negative strand
- compute covariates for a first-of-pair read on the negative strand
- compute covariates for a second-of-pair read on the negative strand
- compute covariates for an unpaired read on the positive strand
- compute covariates for a first-of-pair read on the positive strand
- compute covariates for a second-of-pair read on the positive strand
AlignmentConverterSuite:
- testing the fields in a converted ADAM Read
- converting a read with null quality is OK
- convert a read to fastq
- reverse complement reads when converting to fastq
- converting to fastq with unmapped reads where  read reverse complemented flag (Ox10) was NOT set
- converting to fastq with unmapped reads where reverse complemented flag (0x10) was set
- converting a fragment with no alignments should yield unaligned reads
- converting a fragment with alignments should restore the alignments
- read negative strand is propagated even when not mapped
ConsensusGeneratorFromKnownsSuite:
- no consensuses for empty target
- no consensuses for reads that don't overlap a target
- return a consensus for read overlapping a single target
RichCigarSuite:
- moving 2 bp from a deletion to a match operator
- moving 2 bp from a insertion to a match operator
- moving 1 base in a two element cigar
- move to start of read
- process right clipped cigar
- process left clipped cigar
- process cigar clipped on both ends
MDTaggingSuite:
- test adding MDTags over boundary
- test adding MDTags; reads span full contig
- test adding MDTags; reads start inside first fragment
- test adding MDTags; reads end inside last fragment
- test adding MDTags; reads start inside first fragment and end inside last fragment
- test adding MDTags; reads start and end in middle fragements
2020-08-06 17:20:48 WARN  BlockManager:69 - Putting block rdd_5_3 failed due to exception java.lang.Exception: Contig chr2 not found in reference map with keys: chr1.
2020-08-06 17:20:48 WARN  BlockManager:69 - Block rdd_5_3 could not be removed as it was not found on disk or in memory
2020-08-06 17:20:48 ERROR Executor:94 - Exception in task 3.0 in stage 2.0 (TID 11)
java.lang.Exception: Contig chr2 not found in reference map with keys: chr1
	at org.bdgenomics.adam.util.ReferenceContigMap.$anonfun$extract$1(ReferenceContigMap.scala:64)
	at scala.collection.immutable.Map$Map1.getOrElse(Map.scala:119)
	at org.bdgenomics.adam.util.ReferenceContigMap.extract(ReferenceContigMap.scala:63)
	at org.bdgenomics.adam.rdd.read.MDTagging.$anonfun$addMDTagsBroadcast$3(MDTagging.scala:76)
	at scala.Option$WithFilter.map(Option.scala:163)
	at org.bdgenomics.adam.rdd.read.MDTagging.$anonfun$addMDTagsBroadcast$1(MDTagging.scala:71)
	at scala.collection.Iterator$$anon$10.next(Iterator.scala:459)
	at org.apache.spark.storage.memory.MemoryStore.putIterator(MemoryStore.scala:222)
	at org.apache.spark.storage.memory.MemoryStore.putIteratorAsValues(MemoryStore.scala:299)
	at org.apache.spark.storage.BlockManager.$anonfun$doPutIterator$1(BlockManager.scala:1371)
	at org.apache.spark.storage.BlockManager.org$apache$spark$storage$BlockManager$$doPut(BlockManager.scala:1298)
	at org.apache.spark.storage.BlockManager.doPutIterator(BlockManager.scala:1362)
	at org.apache.spark.storage.BlockManager.getOrElseUpdate(BlockManager.scala:1186)
	at org.apache.spark.rdd.RDD.getOrCompute(RDD.scala:360)
	at org.apache.spark.rdd.RDD.iterator(RDD.scala:311)
	at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90)
	at org.apache.spark.scheduler.Task.run(Task.scala:127)
	at org.apache.spark.executor.Executor$TaskRunner.$anonfun$run$3(Executor.scala:444)
	at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1377)
	at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:447)
	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
	at java.lang.Thread.run(Thread.java:748)
2020-08-06 17:20:48 WARN  TaskSetManager:69 - Lost task 3.0 in stage 2.0 (TID 11, 192.168.10.31, executor driver): java.lang.Exception: Contig chr2 not found in reference map with keys: chr1
	at org.bdgenomics.adam.util.ReferenceContigMap.$anonfun$extract$1(ReferenceContigMap.scala:64)
	at scala.collection.immutable.Map$Map1.getOrElse(Map.scala:119)
	at org.bdgenomics.adam.util.ReferenceContigMap.extract(ReferenceContigMap.scala:63)
	at org.bdgenomics.adam.rdd.read.MDTagging.$anonfun$addMDTagsBroadcast$3(MDTagging.scala:76)
	at scala.Option$WithFilter.map(Option.scala:163)
	at org.bdgenomics.adam.rdd.read.MDTagging.$anonfun$addMDTagsBroadcast$1(MDTagging.scala:71)
	at scala.collection.Iterator$$anon$10.next(Iterator.scala:459)
	at org.apache.spark.storage.memory.MemoryStore.putIterator(MemoryStore.scala:222)
	at org.apache.spark.storage.memory.MemoryStore.putIteratorAsValues(MemoryStore.scala:299)
	at org.apache.spark.storage.BlockManager.$anonfun$doPutIterator$1(BlockManager.scala:1371)
	at org.apache.spark.storage.BlockManager.org$apache$spark$storage$BlockManager$$doPut(BlockManager.scala:1298)
	at org.apache.spark.storage.BlockManager.doPutIterator(BlockManager.scala:1362)
	at org.apache.spark.storage.BlockManager.getOrElseUpdate(BlockManager.scala:1186)
	at org.apache.spark.rdd.RDD.getOrCompute(RDD.scala:360)
	at org.apache.spark.rdd.RDD.iterator(RDD.scala:311)
	at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90)
	at org.apache.spark.scheduler.Task.run(Task.scala:127)
	at org.apache.spark.executor.Executor$TaskRunner.$anonfun$run$3(Executor.scala:444)
	at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1377)
	at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:447)
	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
	at java.lang.Thread.run(Thread.java:748)

2020-08-06 17:20:48 ERROR TaskSetManager:73 - Task 3 in stage 2.0 failed 1 times; aborting job
- try realigning a read on a missing contig, stringency == STRICT
2020-08-06 17:20:50 WARN  MDTagging:190 - Caught exception when processing read chr2: java.lang.Exception: Contig chr2 not found in reference map with keys: chr1
- try realigning a read on a missing contig, stringency == LENIENT
FileExtensionsSuite:
- ends in gzip extension
- is a vcf extension
PhredUtilsSuite:
- convert low phred score to log and back
- convert high phred score to log and back
- convert overflowing phred score to log and back and clip
- convert negative zero log probability to phred and clip
- round trip log probabilities
ReadDatasetSuite:
- create a new read genomic dataset
- create a new read genomic dataset with sequence dictionary
- save as parquet
- round trip as parquet
- save as fastq
- save as single file fastq
- filter read genomic dataset by reference region
- broadcast region join reads and features
- shuffle region join reads and features
- convert reads to alignments
- convert reads to sequences
- convert reads to slices
AlignmentDatasetSuite:
- sorting reads
- unmapped reads go at the end when sorting
- coverage does not fail on unmapped reads
- computes coverage
- computes coverage with multiple samples
- merges adjacent records with equal coverage values
- sorting reads by reference index
- round trip from ADAM to SAM and back to ADAM produces equivalent Read values
- round trip with single CRAM file produces equivalent Read values
- round trip with sharded CRAM file produces equivalent Read values
- SAM conversion sets read mapped flag properly
- load long FASTQ reads
- load FASTQ with no bases
- convert malformed FASTQ (no quality scores) => SAM => well-formed FASTQ => SAM
- round trip from ADAM to FASTQ and back to ADAM produces equivalent Read values
- round trip from ADAM to paired-FASTQ and back to ADAM produces equivalent Read values
- writing a small file with tags should produce the expected result
- writing a small sorted file as SAM should produce the expected result
- writing unordered sam from unordered sam
- writing ordered sam from unordered sam
- write single sam file back
- write single bam file back
- saveAsParquet with save args, sequence dictionary, and read group dictionary
- load parquet to sql, save, re-read from avro
- load from sam, save as partitioned parquet, and re-read from partitioned parquet
- save as SAM format
- save as sorted SAM format
- save as BAM format
- save as sorted BAM format
- save as FASTQ format
- save as ADAM parquet format
- saveAsSam SAM format
- saveAsSam SAM format single file
- saveAsSam sorted SAM format single file
- saveAsSam BAM format
- saveAsSam BAM format single file
- saveAsSam sorted BAM format single file
- saveAsFastq
- saveAsFastq as single file
- saveAsFastq with original base qualities
- saveAsFastq sorted by read name
- saveAsFastq sorted by read name with original base qualities
2020-08-06 17:22:52 WARN  RDDBoundAlignmentDataset:190 - Found 20 read names that don't occur exactly twice:
	1x:	20

Samples:
	simread:1:237728409:true
	simread:1:195211965:false
	simread:1:163841413:false
	simread:1:231911906:false
	simread:1:26472783:false
	simread:1:165341382:true
	simread:1:240344442:true
	simread:1:50683371:false
	simread:1:240997787:true
	simread:1:14397233:false
	simread:1:207027738:true
	simread:1:20101800:true
	simread:1:101556378:false
	simread:1:37577445:false
	simread:1:189606653:true
	simread:1:5469106:true
	simread:1:186794283:true
	simread:1:89554252:false
	simread:1:153978724:false
	simread:1:169801933:true
- saveAsFastq paired FASTQ
2020-08-06 17:22:56 WARN  RDDBoundAlignmentDataset:190 - Found 20 read names that don't occur exactly twice:
	1x:	20

Samples:
	simread:1:237728409:true
	simread:1:195211965:false
	simread:1:163841413:false
	simread:1:231911906:false
	simread:1:26472783:false
	simread:1:165341382:true
	simread:1:240344442:true
	simread:1:50683371:false
	simread:1:240997787:true
	simread:1:14397233:false
	simread:1:207027738:true
	simread:1:20101800:true
	simread:1:101556378:false
	simread:1:37577445:false
	simread:1:189606653:true
	simread:1:5469106:true
	simread:1:186794283:true
	simread:1:89554252:false
	simread:1:153978724:false
	simread:1:169801933:true
- saveAsPairedFastq
2020-08-06 17:22:58 WARN  RDDBoundAlignmentDataset:190 - Found 20 read names that don't occur exactly twice:
	1x:	20

Samples:
	simread:1:237728409:true
	simread:1:195211965:false
	simread:1:163841413:false
	simread:1:231911906:false
	simread:1:26472783:false
	simread:1:165341382:true
	simread:1:240344442:true
	simread:1:50683371:false
	simread:1:240997787:true
	simread:1:14397233:false
	simread:1:207027738:true
	simread:1:20101800:true
	simread:1:101556378:false
	simread:1:37577445:false
	simread:1:189606653:true
	simread:1:5469106:true
	simread:1:186794283:true
	simread:1:89554252:false
	simread:1:153978724:false
	simread:1:169801933:true
- saveAsPairedFastq as single files
- don't lose any reads when piping as SAM
2020-08-06 17:23:13 WARN  OutFormatterRunner:190 - Piped command List(sleep, 10) timed out after 5 seconds.
2020-08-06 17:23:13 WARN  OutFormatterRunner:190 - Piped command List(sleep, 10) timed out after 5 seconds.
- lose all records when a command times out
- lose no records without a timeout
2020-08-06 17:23:35 WARN  OutFormatterRunner:190 - Piped command List(python, /tmp/adamTestMvn1aEve53/spark-ad17d21d-d315-444e-ac99-2598fc9da43e/userFiles-621c0ffd-9248-4071-93ec-dfdd9f4bb906/timeout.py) timed out after 5 seconds.
2020-08-06 17:23:35 WARN  OutFormatterRunner:190 - Piped command List(python, /tmp/adamTestMvn1aEve53/spark-ad17d21d-d315-444e-ac99-2598fc9da43e/userFiles-621c0ffd-9248-4071-93ec-dfdd9f4bb906/timeout.py) timed out after 5 seconds.
- lose some records when a command times out
- don't lose any reads when piping as SAM using java pipe
- don't lose any reads when piping as BAM
- don't lose any reads when piping fastq to sam
- can properly set environment variables inside of a pipe
- read vcf from alignment pipe !!! IGNORED !!!
- use broadcast join to pull down reads mapped to targets
- use broadcast join against to pull down reads mapped to targets
- use right outer broadcast join to pull down reads mapped to targets
- use right outer broadcast join against to pull down reads mapped to targets
- use shuffle join with feature spanning partitions
- use shuffle join to pull down reads mapped to targets
- use shuffle join with flankSize to pull down reads mapped close to targets
- use right outer shuffle join to pull down reads mapped to targets
- use left outer shuffle join to pull down reads mapped to targets
- use full outer shuffle join to pull down reads mapped to targets
- use shuffle join with group by to pull down reads mapped to targets
- use right outer shuffle join with group by to pull down reads mapped to targets
- cannot provide empty quality score bins
- cannot provide bins with a gap
- cannot provide overlapping bins
- binning quality scores in reads succeeds even if reads have no quality scores
- bin quality scores in reads
- union two read files together
- test k-mer counter
- test dataset based k-mer counter
- transform reads to slice genomic dataset
- transform reads to coverage genomic dataset
- transform reads to feature genomic dataset
- transform reads to fragment genomic dataset
- transform reads to genotype genomic dataset
loading /tmp/adamTestMvn1aEve53/TempSuite8875085819384768373.adam as parquet into RDD...
loading /tmp/adamTestMvn1aEve53/TempSuite9155445969933055215.adam as parquet into RDD...
- transform reads to variant genomic dataset
- cannot have a null processing step ID
- convert a processing description to htsjdk
- GenomicDataset.sort does not fail on unmapped reads
- GenomicDataset.sortLexicographically does not fail on unmapped reads
- left normalize indels
2020-08-06 17:24:54 WARN  DAGScheduler:69 - Broadcasting large task binary with size 1134.2 KiB
- running base recalibration with downsampling doesn't drop reads
- filter RDD bound alignments by MAPQ
- filter dataset bound alignments by MAPQ
- filter RDD bound unaligned alignments
- filter dataset bound unaligned alignments
- filter RDD bound unpaired alignments
- filter dataset bound unpaired alignments
- filter RDD bound duplicate alignments
- filter dataset bound duplicate alignments
- filter RDD bound alignments to primary alignments
- filter dataset bound alignments to primary alignments
- filter RDD bound alignments to read group
- filter dataset bound alignments to read group
- filter RDD bound alignments to read groups
- filter dataset bound alignments to read groups
- filter RDD bound alignments to sample
- filter dataset bound alignments to sample
- filter RDD bound alignments to samples
- filter dataset bound alignments to samples
- sort by read name
- transform dataset via java API
- convert alignments to reads
SmithWatermanSuite:
- gather max position from simple scoring matrix
- gather max position from irregular scoring matrix
- gather max position from irregular scoring matrix with deletions
- score simple alignment with constant gap
- score irregular scoring matrix
- score irregular scoring matrix with indel
- can unroll cigars correctly
- execute simple trackback
- execute trackback with indel
- run end to end smith waterman for simple reads
- run end to end smith waterman for short sequences with indel
- run end to end smith waterman for longer sequences with snp
- run end to end smith waterman for longer sequences with short indel
- run end to end smith waterman for shorter sequence in longer sequence
- run end to end smith waterman for shorter sequence in longer sequence, with indel
- smithWaterman - simple alignment
MdTagSuite:
- null md tag
- zero length md tag
- md tag with non-digit initial value
- md tag invalid base
- md tag, pure insertion
- md tag, pure insertion, test 2
- md tag pure insertion equality
- md tag equality and hashcode
- valid md tags
- get start of read with no mismatches or deletions
- get start of read with no mismatches, but with a deletion at the start
- get start of read with mismatches at the start
- get end of read with no mismatches or deletions
- check that mdtag and rich record return same end
- get end of read with no mismatches, but a deletion at end
- CIGAR with N operator
- CIGAR with multiple N operators
- CIGAR with P operators
- Get correct matches for mdtag with insertion
- Get correct matches for mdtag with mismatches and insertion
- Get correct matches for mdtag with insertion between mismatches
- Get correct matches for mdtag with intron between mismatches
- Get correct matches for mdtag with intron and deletion between mismatches
- Throw exception when number of deleted bases in mdtag disagrees with CIGAR
- Get correct matches for mdtag with mismatch, insertion and deletion
- Get correct matches for mdtag with mismatches, insertion and deletion
- Get correct matches for MDTag with mismatches and deletions
- Get correct matches base from MDTag and CIGAR with N
- get end of read with mismatches and a deletion at end
- get correct string out of mdtag with no mismatches
- get correct string out of mdtag with mismatches at start
- get correct string out of mdtag with deletion at end
- get correct string out of mdtag with mismatches at end
- get correct string out of complex mdtag
- check complex mdtag
- get gapped reference
- move a cigar alignment by two for a read
- rewrite alignment to all matches
- rewrite alignment to two mismatches followed by all matches
- rewrite alignment to include a deletion but otherwise all matches
- rewrite alignment to include an insertion at the start of the read but otherwise all matches
- create new md tag from read vs. reference, perfect match
- create new md tag from read vs. reference, perfect alignment match, 1 mismatch
- create new md tag from read vs. reference, alignment with deletion
- create new md tag from read vs. reference, alignment with insert
- handle '=' and 'X' operators
- CIGAR/MD tag mismatch should cause errors
GenomicDatasetSuite:
- processing a command that is the spark root directory should return an absolute path
- processing a command that is just a single word should do nothing
- processing a command should handle arguments that include spaces
- processing a command that is a single substitution should succeed
- processing a command that is multiple words should split the string
- process a command that is multiple words with a replacement
- process a command that is multiple words with multiple replacements
ParallelFileMergerSuite:
- cannot write both empty gzip block and cram eof
- buffer size must be non-negative
- get the size of several files
- block size must be positive and non-zero when trying to merge files
- must provide files to merge
- if two files are both below the block size, they should merge into one shard
- merge two files where one is greater than the block size
- merge a sharded sam file
- merge a sharded bam file
- merge a sharded cram file
- can't turn a negative index into a path
- generate a path from an index
IndelTableSuite:
- check for indels in a region with known indels
- check for indels in a contig that doesn't exist
- check for indels in a region without known indels
- build indel table from rdd of variants
SnpTableSuite:
- create an empty snp table
- create a snp table from variants on multiple contigs
- create a snp table from a larger set of variants
- perform lookups on multi-contig snp table
- perform lookups on larger snp table
RealignIndelsSuite:
- map reads to targets
- checking mapping to targets for artificial reads
- checking alternative consensus for artificial reads
- checking extraction of reference from reads
- checking realigned reads for artificial input
- checking realigned reads for artificial input with reference file
- checking realigned reads for artificial input using knowns
- checking realigned reads for artificial input using knowns and reads
- skip realigning reads if target is highly covered
- skip realignment if target is an insufficient LOD improvement
- realign reads to an insertion
- test mismatch quality scoring
- test mismatch quality scoring for no mismatches
- test mismatch quality scoring for offset
- test mismatch quality scoring with early exit
- test mismatch quality scoring after unpacking read
- we shouldn't try to realign a region with no target
- we shouldn't try to realign reads with no indel evidence
- test OP and OC tags
- realign a read with an insertion that goes off the end of the read
- if realigning a target doesn't improve the LOD, don't drop reads
- extract seq/qual from a read with no clipped bases
- extract seq/qual from a read with clipped bases at start
- extract seq/qual from a read with clipped bases at end
- if unclip is selected, don't drop base when extracting from a read with clipped bases
- get cigar and coordinates for read that spans indel, no clipped bases
- get cigar and coordinates for read that spans deletion, clipped bases at start
- get cigar and coordinates for read that falls wholly before insertion
- get cigar and coordinates for read that falls wholly after insertion
- get cigar and coordinates for read that falls wholly after deletion
- get cigar and coordinates for read that partially spans insertion, no clipped bases
- get cigar and coordinates for read that partially spans insertion, clipped bases at end
- get cigar and coordinates for read that partially spans insertion, clipped bases both ends
BaseQualityRecalibrationSuite:
2020-08-06 17:25:20 WARN  DAGScheduler:69 - Broadcasting large task binary with size 1134.2 KiB
- BQSR Test Input #1 w/ VCF Sites without caching
2020-08-06 17:25:28 WARN  DAGScheduler:69 - Broadcasting large task binary with size 1134.2 KiB
- BQSR Test Input #1 w/ VCF Sites with caching
2020-08-06 17:25:35 WARN  DAGScheduler:69 - Broadcasting large task binary with size 1134.2 KiB
- BQSR Test Input #1 w/ VCF Sites with serialized caching
DinucCovariateSuite:
- computing dinucleotide pairs for a single base sequence should return (N,N)
- compute dinucleotide pairs for a string of all valid bases
- compute dinucleotide pairs for a string with an N
- compute covariates for a read on the negative strand
- compute covariates for a read on the positive strand
SequenceDictionarySuite:
- Convert from sam sequence record and back
- Convert from SAM sequence dictionary file (with extra fields)
- merge into existing dictionary
- Convert from SAM sequence dictionary and back
- Can retrieve sequence by name
- SequenceDictionary's with same single element are equal
- SequenceDictionary's with same two elements are equals
- SequenceDictionary's with different elements are unequal
- SequenceDictionaries with same elements in different order are compatible
- isCompatible tests equality on overlap
- The addition + works correctly
- The append operation ++ works correctly
- ContainsRefName works correctly for different string types
- Apply on name works correctly for different String types
- convert from sam sequence record and back
- convert from sam sequence dictionary and back
- conversion to sam sequence dictionary has correct sort order
- load sequence dictionary from VCF file
- empty sequence dictionary must be empty
- test filter to reference name
- test filter to reference names
- test filter to reference name by function
GenomicPositionPartitionerSuite:
- partitions the UNMAPPED ReferencePosition into the top partition
- if we do not have a contig for a record, we throw an IAE
- partitioning into N pieces on M total sequence length, where N > M, results in M partitions
- correctly partitions a single dummy sequence into two pieces
- correctly counts cumulative lengths
- correctly partitions positions across two dummy sequences
- test that we can range partition ADAMRecords
- test that we can range partition ADAMRecords indexed by sample
- test that simple partitioning works okay on a reasonable set of ADAMRecords
- test indexed ReferencePosition partitioning works on a set of indexed ADAMRecords
CoverageSuite:
- Convert to coverage from valid Feature
- Convert to coverage from valid Feature with sampleId
- Convert to coverage from Feature with null/empty contigName fails with correct error
- Convert to coverage from Feature with no start/end position fails with correct error
- Convert to coverage from Feature with no score fails with correct error
InnerTreeRegionJoinSuite:
- Ensure same reference regions get passed together
- Overlapping reference regions
- Multiple reference regions do not throw exception
VariantDatasetSuite:
- union two variant genomic datasets together
- round trip to parquet
- save and reload from partitioned parquet
- use broadcast join to pull down variants mapped to targets
- use right outer broadcast join to pull down variants mapped to targets
- use shuffle join to pull down variants mapped to targets
- use right outer shuffle join to pull down variants mapped to targets
- use left outer shuffle join to pull down variants mapped to targets
- use full outer shuffle join to pull down variants mapped to targets
- use shuffle join with group by to pull down variants mapped to targets
- use right outer shuffle join with group by to pull down variants mapped to targets
- convert back to variant contexts
- load parquet to sql, save, re-read from avro
2020-08-06 17:26:05 WARN  DatasetBoundSliceDataset:190 - Saving directly as Parquet from SQL. Options other than compression codec are ignored.
- transform variants to slice genomic dataset
- transform variants to coverage genomic dataset
- transform variants to feature genomic dataset
- transform variants to fragment genomic dataset
- transform variants to read genomic dataset
- transform variants to genotype genomic dataset
- transform variants to variant context genomic dataset
- filter RDD bound variants to filters passed
- filter dataset bound variants to filters passed
- filter RDD bound variants by quality
- filter dataset bound variants by quality
- filter RDD bound variants by read depth
- filter dataset bound variants by read depth
- filter RDD bound variants by reference read depth
- filter dataset bound variants by reference read depth
- filter RDD bound single nucleotide variants
- filter dataset bound single nucleotide variants
- filter RDD bound multiple nucleotide variants
- filter dataset bound multiple nucleotide variants
- filter RDD bound indel variants
- filter dataset bound indel variants
- filter RDD bound variants to single nucleotide variants
- filter dataset bound variants to single nucleotide variants
- filter RDD bound variants to multiple nucleotide variants
- filter dataset bound variants to multiple nucleotide variants
- filter RDD bound variants to indel variants
- filter dataset bound variants to indel variants
- transform dataset via java API
Run completed in 9 minutes, 24 seconds.
Total number of tests run: 1175
Suites: completed 68, aborted 0
Tests: succeeded 1175, failed 0, canceled 0, ignored 5, pending 0
All tests passed.
[INFO] 
[INFO] <<< scoverage-maven-plugin:1.1.1:report (default-cli) < [scoverage]test @ adam-core-spark3_2.12 <<<
[INFO] 
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:report (default-cli) @ adam-core-spark3_2.12 ---
[INFO] Skipping SCoverage report generation
[INFO] 
[INFO] -------------< org.bdgenomics.adam:adam-apis-spark3_2.12 >--------------
[INFO] Building ADAM_2.12: APIs for Java, Python 0.33.0-SNAPSHOT          [5/7]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-apis-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-apis-spark3_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-apis-spark3_2.12 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-apis/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-apis-spark3_2.12 ---
[INFO] Modified 0 of 5 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-apis-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-apis/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-apis-spark3_2.12 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-apis/src/main/scala:-1: info: compiling
[INFO] Compiling 4 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-apis/target/2.12.8/classes at 1596760001723
[WARNING] warning: there was one deprecation warning (since 2.12.0); re-run with -deprecation for details
[WARNING] warning: there were two feature warnings; re-run with -feature for details
[WARNING] two warnings found
[INFO] prepare-compile in 0 s
[INFO] compile in 6 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-apis-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-apis-spark3_2.12 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-apis/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-apis-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 2 resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-apis-spark3_2.12 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-apis/src/test/java:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-apis/src/test/scala:-1: info: compiling
[INFO] Compiling 9 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-apis/target/2.12.8/test-classes at 1596760008915
[INFO] prepare-compile in 0 s
[INFO] compile in 4 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-apis-spark3_2.12 ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 8 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-apis/target/2.12.8/test-classes
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-apis-spark3_2.12 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-apis-spark3_2.12 ---
Discovery starting.
Discovery completed in 249 milliseconds.
Run starting. Expected test count is: 10
JavaADAMContextSuite:
2020-08-06 17:26:55 WARN  Utils:69 - Your hostname, research-jenkins-worker-09 resolves to a loopback address: 127.0.1.1; using 192.168.10.31 instead (on interface enp4s0f0)
2020-08-06 17:26:55 WARN  Utils:69 - Set SPARK_LOCAL_IP if you need to bind to another address
2020-08-06 17:26:55 WARN  NativeCodeLoader:62 - Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
- can read and write a small .SAM file
- loadIndexedBam with multiple ReferenceRegions
- can read and write a small .SAM file as fragments
- can read and write a small .bed file as features
- can read and write a small .bed file as coverage
- can read and write a small .vcf as genotypes
- can read and write a small .vcf as variants
- can read a two bit file
2020-08-06 17:27:06 WARN  RDDBoundSequenceDataset:190 - asSingleFile = true ignored when saving as Parquet.
- can read and write .fa as sequences
2020-08-06 17:27:06 WARN  RDDBoundSliceDataset:190 - asSingleFile = true ignored when saving as Parquet.
- can read and write .fa as slices
Run completed in 12 seconds, 471 milliseconds.
Total number of tests run: 10
Suites: completed 2, aborted 0
Tests: succeeded 10, failed 0, canceled 0, ignored 0, pending 0
All tests passed.
[INFO] 
[INFO] >>> scoverage-maven-plugin:1.1.1:report (default-cli) > [scoverage]test @ adam-apis-spark3_2.12 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-apis-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-apis-spark3_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-apis-spark3_2.12 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-apis/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-apis-spark3_2.12 ---
[INFO] Modified 0 of 5 .scala files
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:pre-compile (default-cli) @ adam-apis-spark3_2.12 ---
[WARNING] Skipping SCoverage execution - unsupported Scala version "2.12.8"
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-apis-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-apis/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-apis-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-apis-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:post-compile (default-cli) @ adam-apis-spark3_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-apis-spark3_2.12 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-apis/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-apis-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 2 resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-apis-spark3_2.12 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-apis/src/test/java:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-apis/src/test/scala:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-apis/target/generated-test-sources/test-annotations:-1: info: compiling
[INFO] Compiling 9 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-apis/target/2.12.8/test-classes at 1596760028761
[INFO] prepare-compile in 0 s
[INFO] compile in 4 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-apis-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-apis-spark3_2.12 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-apis-spark3_2.12 ---
Discovery starting.
Discovery completed in 209 milliseconds.
Run starting. Expected test count is: 10
JavaADAMContextSuite:
2020-08-06 17:27:14 WARN  Utils:69 - Your hostname, research-jenkins-worker-09 resolves to a loopback address: 127.0.1.1; using 192.168.10.31 instead (on interface enp4s0f0)
2020-08-06 17:27:14 WARN  Utils:69 - Set SPARK_LOCAL_IP if you need to bind to another address
2020-08-06 17:27:15 WARN  NativeCodeLoader:62 - Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
- can read and write a small .SAM file
- loadIndexedBam with multiple ReferenceRegions
- can read and write a small .SAM file as fragments
- can read and write a small .bed file as features
- can read and write a small .bed file as coverage
- can read and write a small .vcf as genotypes
- can read and write a small .vcf as variants
- can read a two bit file
2020-08-06 17:27:25 WARN  RDDBoundSequenceDataset:190 - asSingleFile = true ignored when saving as Parquet.
- can read and write .fa as sequences
2020-08-06 17:27:26 WARN  RDDBoundSliceDataset:190 - asSingleFile = true ignored when saving as Parquet.
- can read and write .fa as slices
Run completed in 12 seconds, 393 milliseconds.
Total number of tests run: 10
Suites: completed 2, aborted 0
Tests: succeeded 10, failed 0, canceled 0, ignored 0, pending 0
All tests passed.
[INFO] 
[INFO] <<< scoverage-maven-plugin:1.1.1:report (default-cli) < [scoverage]test @ adam-apis-spark3_2.12 <<<
[INFO] 
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:report (default-cli) @ adam-apis-spark3_2.12 ---
[INFO] Skipping SCoverage report generation
[INFO] 
[INFO] --------------< org.bdgenomics.adam:adam-cli-spark3_2.12 >--------------
[INFO] Building ADAM_2.12: CLI 0.33.0-SNAPSHOT                            [6/7]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-cli-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-cli-spark3_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:timestamp-property (timestamp-property) @ adam-cli-spark3_2.12 ---
[INFO] 
[INFO] --- git-commit-id-plugin:2.2.2:revision (default) @ adam-cli-spark3_2.12 ---
[INFO] 
[INFO] --- templating-maven-plugin:1.0.0:filter-sources (filter-src) @ adam-cli-spark3_2.12 ---
[INFO] Coping files with filtering to temporary directory.
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 1 resource
[INFO] Copied 1 files to output directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/target/generated-sources/java-templates
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/target/generated-sources/java-templates added.
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-cli-spark3_2.12 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-cli-spark3_2.12 ---
[INFO] Modified 0 of 29 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-cli-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-cli-spark3_2.12 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/target/generated-sources/java-templates:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/src/main/scala:-1: info: compiling
[INFO] Compiling 18 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/target/2.12.8/classes at 1596760048463
[WARNING] warning: there was one deprecation warning
[WARNING] warning: there was one deprecation warning (since 2.12.0)
[WARNING] warning: there were two deprecation warnings in total; re-run with -deprecation for details
[WARNING] three warnings found
[INFO] prepare-compile in 0 s
[INFO] compile in 7 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-cli-spark3_2.12 ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 1 source file to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/target/2.12.8/classes
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-cli-spark3_2.12 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-cli-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 15 resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-cli-spark3_2.12 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/src/test/scala:-1: info: compiling
[INFO] Compiling 12 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/target/2.12.8/test-classes at 1596760056910
[INFO] prepare-compile in 0 s
[INFO] compile in 6 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-cli-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-cli-spark3_2.12 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-cli-spark3_2.12 ---
Discovery starting.
Discovery completed in 247 milliseconds.
Run starting. Expected test count is: 44
TransformFeaturesSuite:
2020-08-06 17:27:45 WARN  Utils:69 - Your hostname, research-jenkins-worker-09 resolves to a loopback address: 127.0.1.1; using 192.168.10.31 instead (on interface enp4s0f0)
2020-08-06 17:27:45 WARN  Utils:69 - Set SPARK_LOCAL_IP if you need to bind to another address
2020-08-06 17:27:45 WARN  NativeCodeLoader:62 - Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
- can convert a simple BED file
TransformVariantsSuite:
- save a file sorted by contig index
- save a lexicographically sorted file
ViewSuite:
- -f 0 -F 0 is a no-op
- no -f or -F args is a no-op
- -f 4: only unmapped reads
- -F 4: only mapped reads
- -f 4 -F 8: unmapped reads with mapped mates
- -f 12: unmapped reads with unmapped mates
- -g 12: reads that are unmapped or whose mate is unmapped
- -F 12: mapped reads with mapped mates
- -g 36: unmapped reads or reads with mate on negative strand
- -F 36: unmapped reads or reads with mate on negative strand
TransformFragmentsSuite:
- load queryname sorted sam and save as parquet
- cannot sort if not saving as sam
2020-08-06 17:27:59 WARN  TransformFragments:190 - If loading and saving as alignments, consider using TransformAlignments instead
- load reads as sam and save them sorted
- bin quality scores on reads
TransformGenotypesSuite:
- save a file sorted by contig index
- save a lexicographically sorted file
- transform VCF without nested annotations
- transform VCF with nested annotations
AboutSuite:
- template variables have been replaced
- templated values are not empty
CoverageSuite:
- correctly calculates coverage from small sam file
MergeShardsSuite:
- merge shards from unordered sam to unordered sam
- unordered sam to ordered sam
- merge sharded bam
- merge sharded cram
TransformAlignmentsSuite:
- unordered sam to unordered sam
- unordered sam to ordered sam
- unordered sam, to adam, to sam
- unordered sam, to adam, to ordered sam
- put quality scores into bins
- run region predicate
ADAMMainSuite:
- default command groups is non empty
- module provides default command groups
- inject default command groups when called via main
- command groups is empty when called via apply
- single command group
- add new command group to default command groups
- module restores default command groups when called via apply
- custom module with single command group
- custom module with new command group added to default command groups
Adam2FastqSuite:
2020-08-06 17:28:09 WARN  RDDBoundAlignmentDataset:190 - Found 16 read names that don't occur exactly twice:
	1x:	16

Samples:
	SRR062634.16445865
	SRR062634.9119161
	SRR062634.17190076
	SRR062634.17969132
	SRR062634.7301099
	SRR062634.2087100
	SRR062634.20911784
	SRR062634.16769670
	SRR062634.18958430
	SRR062634.12099057
	SRR062634.12606172
	SRR062634.14985224
	SRR062634.10448889
	SRR062634.4789722
	SRR062634.3203184
	SRR062634.17698657
- convert SAM to paired FASTQ
Run completed in 26 seconds, 122 milliseconds.
Total number of tests run: 44
Suites: completed 12, aborted 0
Tests: succeeded 44, failed 0, canceled 0, ignored 0, pending 0
All tests passed.
[INFO] 
[INFO] >>> scoverage-maven-plugin:1.1.1:report (default-cli) > [scoverage]test @ adam-cli-spark3_2.12 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-cli-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-cli-spark3_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:timestamp-property (timestamp-property) @ adam-cli-spark3_2.12 ---
[INFO] 
[INFO] --- git-commit-id-plugin:2.2.2:revision (default) @ adam-cli-spark3_2.12 ---
[INFO] 
[INFO] --- templating-maven-plugin:1.0.0:filter-sources (filter-src) @ adam-cli-spark3_2.12 ---
[INFO] Coping files with filtering to temporary directory.
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 1 resource
[INFO] No files needs to be copied to output directory. Up to date: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/target/generated-sources/java-templates
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/target/generated-sources/java-templates added.
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-cli-spark3_2.12 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-cli-spark3_2.12 ---
[INFO] Modified 0 of 29 .scala files
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:pre-compile (default-cli) @ adam-cli-spark3_2.12 ---
[WARNING] Skipping SCoverage execution - unsupported Scala version "2.12.8"
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-cli-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-cli-spark3_2.12 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/target/generated-sources/java-templates:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/src/main/scala:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/target/generated-sources/annotations:-1: info: compiling
[INFO] Compiling 18 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/target/2.12.8/classes at 1596760092135
[WARNING] warning: there was one deprecation warning
[WARNING] warning: there was one deprecation warning (since 2.12.0)
[WARNING] warning: there were two deprecation warnings in total; re-run with -deprecation for details
[WARNING] three warnings found
[INFO] prepare-compile in 0 s
[INFO] compile in 7 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-cli-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:post-compile (default-cli) @ adam-cli-spark3_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-cli-spark3_2.12 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-cli-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 15 resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-cli-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-cli-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-cli-spark3_2.12 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-cli-spark3_2.12 ---
Discovery starting.
Discovery completed in 214 milliseconds.
Run starting. Expected test count is: 44
TransformFeaturesSuite:
2020-08-06 17:28:22 WARN  Utils:69 - Your hostname, research-jenkins-worker-09 resolves to a loopback address: 127.0.1.1; using 192.168.10.31 instead (on interface enp4s0f0)
2020-08-06 17:28:22 WARN  Utils:69 - Set SPARK_LOCAL_IP if you need to bind to another address
2020-08-06 17:28:22 WARN  NativeCodeLoader:62 - Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
- can convert a simple BED file
TransformVariantsSuite:
- save a file sorted by contig index
- save a lexicographically sorted file
ViewSuite:
- -f 0 -F 0 is a no-op
- no -f or -F args is a no-op
- -f 4: only unmapped reads
- -F 4: only mapped reads
- -f 4 -F 8: unmapped reads with mapped mates
- -f 12: unmapped reads with unmapped mates
- -g 12: reads that are unmapped or whose mate is unmapped
- -F 12: mapped reads with mapped mates
- -g 36: unmapped reads or reads with mate on negative strand
- -F 36: unmapped reads or reads with mate on negative strand
TransformFragmentsSuite:
- load queryname sorted sam and save as parquet
- cannot sort if not saving as sam
2020-08-06 17:28:35 WARN  TransformFragments:190 - If loading and saving as alignments, consider using TransformAlignments instead
- load reads as sam and save them sorted
- bin quality scores on reads
TransformGenotypesSuite:
- save a file sorted by contig index
- save a lexicographically sorted file
- transform VCF without nested annotations
- transform VCF with nested annotations
AboutSuite:
- template variables have been replaced
- templated values are not empty
CoverageSuite:
- correctly calculates coverage from small sam file
MergeShardsSuite:
- merge shards from unordered sam to unordered sam
- unordered sam to ordered sam
- merge sharded bam
- merge sharded cram
TransformAlignmentsSuite:
- unordered sam to unordered sam
- unordered sam to ordered sam
- unordered sam, to adam, to sam
- unordered sam, to adam, to ordered sam
- put quality scores into bins
- run region predicate
ADAMMainSuite:
- default command groups is non empty
- module provides default command groups
- inject default command groups when called via main
- command groups is empty when called via apply
- single command group
- add new command group to default command groups
- module restores default command groups when called via apply
- custom module with single command group
- custom module with new command group added to default command groups
Adam2FastqSuite:
2020-08-06 17:28:45 WARN  RDDBoundAlignmentDataset:190 - Found 16 read names that don't occur exactly twice:
	1x:	16

Samples:
	SRR062634.16445865
	SRR062634.9119161
	SRR062634.17190076
	SRR062634.17969132
	SRR062634.7301099
	SRR062634.2087100
	SRR062634.20911784
	SRR062634.16769670
	SRR062634.18958430
	SRR062634.12099057
	SRR062634.12606172
	SRR062634.14985224
	SRR062634.10448889
	SRR062634.4789722
	SRR062634.3203184
	SRR062634.17698657
- convert SAM to paired FASTQ
Run completed in 25 seconds, 59 milliseconds.
Total number of tests run: 44
Suites: completed 12, aborted 0
Tests: succeeded 44, failed 0, canceled 0, ignored 0, pending 0
All tests passed.
[INFO] 
[INFO] <<< scoverage-maven-plugin:1.1.1:report (default-cli) < [scoverage]test @ adam-cli-spark3_2.12 <<<
[INFO] 
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:report (default-cli) @ adam-cli-spark3_2.12 ---
[INFO] Skipping SCoverage report generation
[INFO] 
[INFO] -----------< org.bdgenomics.adam:adam-assembly-spark3_2.12 >------------
[INFO] Building ADAM_2.12: Assembly 0.33.0-SNAPSHOT                       [7/7]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-assembly-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-assembly-spark3_2.12 ---
[INFO] 
[INFO] --- git-commit-id-plugin:2.2.2:revision (default) @ adam-assembly-spark3_2.12 ---
[INFO] 
[INFO] --- templating-maven-plugin:1.0.0:filter-sources (filter-src) @ adam-assembly-spark3_2.12 ---
[INFO] Request to add '/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-assembly/src/main/java-templates' folder. Not added since it does not exist.
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-assembly-spark3_2.12 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-assembly/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-assembly-spark3_2.12 ---
[INFO] Modified 0 of 1 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-assembly-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-assembly/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-assembly-spark3_2.12 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-assembly/src/main/scala:-1: info: compiling
[INFO] Compiling 1 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-assembly/target/2.12.8/classes at 1596760127364
[INFO] prepare-compile in 0 s
[INFO] compile in 2 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-assembly-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-assembly-spark3_2.12 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-assembly/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-assembly-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-assembly/src/test/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-assembly-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-assembly-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-assembly-spark3_2.12 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] >>> scoverage-maven-plugin:1.1.1:report (default-cli) > [scoverage]test @ adam-assembly-spark3_2.12 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-assembly-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-assembly-spark3_2.12 ---
[INFO] 
[INFO] --- git-commit-id-plugin:2.2.2:revision (default) @ adam-assembly-spark3_2.12 ---
[INFO] 
[INFO] --- templating-maven-plugin:1.0.0:filter-sources (filter-src) @ adam-assembly-spark3_2.12 ---
[INFO] Request to add '/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-assembly/src/main/java-templates' folder. Not added since it does not exist.
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-assembly-spark3_2.12 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-assembly/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-assembly-spark3_2.12 ---
[INFO] Modified 0 of 1 .scala files
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:pre-compile (default-cli) @ adam-assembly-spark3_2.12 ---
[WARNING] Skipping SCoverage execution - unsupported Scala version "2.12.8"
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-assembly-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-assembly/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-assembly-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-assembly-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:post-compile (default-cli) @ adam-assembly-spark3_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-assembly-spark3_2.12 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-assembly/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-assembly-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-assembly/src/test/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-assembly-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-assembly-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-assembly-spark3_2.12 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] <<< scoverage-maven-plugin:1.1.1:report (default-cli) < [scoverage]test @ adam-assembly-spark3_2.12 <<<
[INFO] 
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:report (default-cli) @ adam-assembly-spark3_2.12 ---
[INFO] [scoverage] Generating aggregated cobertura XML report...
[INFO] [scoverage] Generating aggregated scoverage XML report...
[INFO] [scoverage] Generating aggregated scoverage HTML report...
[INFO] Skipping SCoverage report generation
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary for ADAM_2.12 0.33.0-SNAPSHOT:
[INFO] 
[INFO] ADAM_2.12 .......................................... SUCCESS [ 10.265 s]
[INFO] ADAM_2.12: Shader workaround ....................... SUCCESS [  6.120 s]
[INFO] ADAM_2.12: Avro-to-Dataset codegen utils ........... SUCCESS [  7.155 s]
[INFO] ADAM_2.12: Core .................................... SUCCESS [20:06 min]
[INFO] ADAM_2.12: APIs for Java, Python ................... SUCCESS [ 45.919 s]
[INFO] ADAM_2.12: CLI ..................................... SUCCESS [01:20 min]
[INFO] ADAM_2.12: Assembly ................................ SUCCESS [  3.865 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESS
[INFO] ------------------------------------------------------------------------
[INFO] Total time:  22:40 min
[INFO] Finished at: 2020-08-06T17:28:50-07:00
[INFO] ------------------------------------------------------------------------

# if those pass, build the distribution package
mvn -U \
    -P distribution \
    package \
    -DskipTests \
    -Dhadoop.version=${HADOOP_VERSION} \
    -DargLine=${ADAM_MVN_TMP_DIR}
+ mvn -U -P distribution package -DskipTests -Dhadoop.version=2.7.5 -DargLine=/tmp/adamTestMvn1aEve53
OpenJDK 64-Bit Server VM warning: ignoring option MaxPermSize=1g; support was removed in 8.0
[INFO] Scanning for projects...
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Build Order:
[INFO] 
[INFO] ADAM_2.12                                                          [pom]
[INFO] ADAM_2.12: Shader workaround                                       [jar]
[INFO] ADAM_2.12: Avro-to-Dataset codegen utils                           [jar]
[INFO] ADAM_2.12: Core                                                    [jar]
[INFO] ADAM_2.12: APIs for Java, Python                                   [jar]
[INFO] ADAM_2.12: CLI                                                     [jar]
[INFO] ADAM_2.12: Assembly                                                [jar]
[INFO] ADAM_2.12: Distribution                                            [pom]
[INFO] 
[INFO] ------------< org.bdgenomics.adam:adam-parent-spark3_2.12 >-------------
[INFO] Building ADAM_2.12 0.33.0-SNAPSHOT                                 [1/8]
[INFO] --------------------------------[ pom ]---------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-parent-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-parent-spark3_2.12 ---
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-parent-spark3_2.12 ---
[INFO] Modified 0 of 244 .scala files
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-parent-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-parent-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-source-plugin:3.0.1:jar-no-fork (attach-sources) @ adam-parent-spark3_2.12 ---
[INFO] 
[INFO] --- maven-javadoc-plugin:3.1.0:jar (attach-javadoc) @ adam-parent-spark3_2.12 ---
[INFO] 
[INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ adam-parent-spark3_2.12 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-parent-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-parent-spark3_2.12 ---
[INFO] 
[INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ adam-parent-spark3_2.12 <<<
[INFO] 
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ adam-parent-spark3_2.12 ---
[INFO] No source files found
[INFO] 
[INFO] -------------< org.bdgenomics.adam:adam-shade-spark3_2.12 >-------------
[INFO] Building ADAM_2.12: Shader workaround 0.33.0-SNAPSHOT              [2/8]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-shade-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-shade-spark3_2.12 ---
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-shade-spark3_2.12 ---
[INFO] Modified 0 of 0 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-shade-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-shade/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-shade-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-shade-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- plexus-component-metadata:1.5.5:generate-metadata (default) @ adam-shade-spark3_2.12 ---
[INFO] Discovered 1 component descriptors(s)
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-shade-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-shade/src/test/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-shade-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-shade-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-shade-spark3_2.12 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ adam-shade-spark3_2.12 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-shade/target/adam-shade-spark3_2.12-0.33.0-SNAPSHOT.jar
[INFO] 
[INFO] --- maven-source-plugin:3.0.1:jar-no-fork (attach-sources) @ adam-shade-spark3_2.12 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-shade/target/adam-shade-spark3_2.12-0.33.0-SNAPSHOT-sources.jar
[INFO] 
[INFO] --- maven-javadoc-plugin:3.1.0:jar (attach-javadoc) @ adam-shade-spark3_2.12 ---
[INFO] 
Loading source files for package org.bdgenomics.adam.shade...
Constructing Javadoc information...
Standard Doclet version 1.8.0_222
Building tree for all the packages and classes...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-shade/target/apidocs/org/bdgenomics/adam/shade/ParquetAvroWorkaroundShader.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-shade/target/apidocs/org/bdgenomics/adam/shade/package-frame.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-shade/target/apidocs/org/bdgenomics/adam/shade/package-summary.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-shade/target/apidocs/org/bdgenomics/adam/shade/package-tree.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-shade/target/apidocs/constant-values.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-shade/target/apidocs/org/bdgenomics/adam/shade/class-use/ParquetAvroWorkaroundShader.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-shade/target/apidocs/org/bdgenomics/adam/shade/package-use.html...
Building index for all the packages and classes...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-shade/target/apidocs/overview-tree.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-shade/target/apidocs/index-all.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-shade/target/apidocs/deprecated-list.html...
Building index for all classes...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-shade/target/apidocs/allclasses-frame.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-shade/target/apidocs/allclasses-noframe.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-shade/target/apidocs/index.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-shade/target/apidocs/help-doc.html...
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-shade/target/adam-shade-spark3_2.12-0.33.0-SNAPSHOT-javadoc.jar
[INFO] 
[INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ adam-shade-spark3_2.12 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-shade-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-shade-spark3_2.12 ---
[INFO] 
[INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ adam-shade-spark3_2.12 <<<
[INFO] 
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ adam-shade-spark3_2.12 ---
model contains 6 documentable templates
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-shade/target/adam-shade-spark3_2.12-0.33.0-SNAPSHOT-javadoc.jar
[INFO] 
[INFO] ------------< org.bdgenomics.adam:adam-codegen-spark3_2.12 >------------
[INFO] Building ADAM_2.12: Avro-to-Dataset codegen utils 0.33.0-SNAPSHOT  [3/8]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-codegen-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-codegen-spark3_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-codegen-spark3_2.12 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-codegen/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-codegen-spark3_2.12 ---
[INFO] Modified 0 of 4 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-codegen-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-codegen/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-codegen-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-codegen-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-codegen-spark3_2.12 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-codegen/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-codegen-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-codegen/src/test/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-codegen-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-codegen-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-codegen-spark3_2.12 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-codegen-spark3_2.12 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ adam-codegen-spark3_2.12 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-codegen/target/adam-codegen-spark3_2.12-0.33.0-SNAPSHOT.jar
[INFO] 
[INFO] --- maven-source-plugin:3.0.1:jar-no-fork (attach-sources) @ adam-codegen-spark3_2.12 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-codegen/target/adam-codegen-spark3_2.12-0.33.0-SNAPSHOT-sources.jar
[INFO] 
[INFO] --- maven-javadoc-plugin:3.1.0:jar (attach-javadoc) @ adam-codegen-spark3_2.12 ---
[INFO] 
[INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ adam-codegen-spark3_2.12 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-codegen-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-codegen-spark3_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-codegen-spark3_2.12 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-codegen/src/main/scala added.
[INFO] 
[INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ adam-codegen-spark3_2.12 <<<
[INFO] 
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ adam-codegen-spark3_2.12 ---
model contains 11 documentable templates
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-codegen/target/adam-codegen-spark3_2.12-0.33.0-SNAPSHOT-javadoc.jar
[INFO] 
[INFO] -------------< org.bdgenomics.adam:adam-core-spark3_2.12 >--------------
[INFO] Building ADAM_2.12: Core 0.33.0-SNAPSHOT                           [4/8]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-core-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-core-spark3_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-core-spark3_2.12 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/main/scala added.
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/generated-sources/src/main/scala added.
[INFO] 
[INFO] --- exec-maven-plugin:1.5.0:java (generate-scala-products) @ adam-core-spark3_2.12 ---
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] 
[INFO] --- exec-maven-plugin:1.5.0:java (generate-scala-projection-fields) @ adam-core-spark3_2.12 ---
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-core-spark3_2.12 ---
[INFO] Modified 2 of 204 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-core-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-core-spark3_2.12 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/main/java:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/main/scala:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/generated-sources/src/main/scala:-1: info: compiling
[INFO] Compiling 140 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/2.12.8/classes at 1596760156080
[WARNING] warning: there were 21 deprecation warnings
[WARNING] warning: there were 31 deprecation warnings (since 0.21.0)
[WARNING] warning: there was one deprecation warning (since 1.0.6)
[WARNING] warning: there was one deprecation warning (since 2.11.0)
[WARNING] warning: there were 175 deprecation warnings (since 2.12.0)
[WARNING] warning: there was one deprecation warning (since 2.12.7)
[WARNING] warning: there were 230 deprecation warnings in total; re-run with -deprecation for details
[WARNING] warning: there were 5 feature warnings; re-run with -feature for details
[WARNING] 8 warnings found
[INFO] prepare-compile in 0 s
[INFO] compile in 25 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-core-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-core-spark3_2.12 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-core-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 152 resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-core-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-core-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-core-spark3_2.12 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-core-spark3_2.12 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ adam-core-spark3_2.12 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/adam-core-spark3_2.12-0.33.0-SNAPSHOT.jar
[INFO] 
[INFO] --- maven-source-plugin:3.0.1:jar-no-fork (attach-sources) @ adam-core-spark3_2.12 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/adam-core-spark3_2.12-0.33.0-SNAPSHOT-sources.jar
[INFO] 
[INFO] --- maven-javadoc-plugin:3.1.0:jar (attach-javadoc) @ adam-core-spark3_2.12 ---
[INFO] The goal 'org.apache.maven.plugins:maven-javadoc-plugin:3.1.0:javadoc' has not been previously called for the module: 'org.bdgenomics.adam:adam-codegen-spark3_2.12:jar:0.33.0-SNAPSHOT'. Trying to invoke it...
OpenJDK 64-Bit Server VM warning: ignoring option MaxPermSize=1g; support was removed in 8.0
[WARNING] Creating fake javadoc directory to prevent repeated invocations: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-codegen/target/apidocs
[ERROR] Error fetching link: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-codegen/target/apidocs. Ignored it.
[INFO] 
Loading source files for package org.apache.parquet.avro...
Loading source files for package org.bdgenomics.adam.io...
Constructing Javadoc information...
Standard Doclet version 1.8.0_222
Building tree for all the packages and classes...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/apidocs/org/apache/parquet/avro/AvroSchemaConverter.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/FastqInputFormat.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/FastqRecordReader.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/InterleavedFastqInputFormat.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/SingleFastqInputFormat.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/apidocs/overview-frame.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/apidocs/org/apache/parquet/avro/package-frame.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/apidocs/org/apache/parquet/avro/package-summary.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/apidocs/org/apache/parquet/avro/package-tree.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/package-frame.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/package-summary.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/package-tree.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/apidocs/constant-values.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/apidocs/org/apache/parquet/avro/class-use/AvroSchemaConverter.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/class-use/SingleFastqInputFormat.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/class-use/FastqInputFormat.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/class-use/InterleavedFastqInputFormat.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/class-use/FastqRecordReader.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/apidocs/org/apache/parquet/avro/package-use.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/package-use.html...
Building index for all the packages and classes...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/apidocs/overview-tree.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/apidocs/index-all.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/apidocs/deprecated-list.html...
Building index for all classes...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/apidocs/allclasses-frame.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/apidocs/allclasses-noframe.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/apidocs/index.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/apidocs/overview-summary.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/apidocs/help-doc.html...
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/adam-core-spark3_2.12-0.33.0-SNAPSHOT-javadoc.jar
[INFO] 
[INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ adam-core-spark3_2.12 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-core-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-core-spark3_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-core-spark3_2.12 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/main/scala added.
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/generated-sources/src/main/scala added.
[INFO] 
[INFO] --- exec-maven-plugin:1.5.0:java (generate-scala-products) @ adam-core-spark3_2.12 ---
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] 
[INFO] --- exec-maven-plugin:1.5.0:java (generate-scala-projection-fields) @ adam-core-spark3_2.12 ---
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] 
[INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ adam-core-spark3_2.12 <<<
[INFO] 
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ adam-core-spark3_2.12 ---
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverters.scala:274: warning: discarding unmoored doc comment
    /**
    ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentDataset.scala:840: warning: Octal escape literals are deprecated, use \u0001 instead.
      binaryCodec.writeBytes("BAM\001".getBytes())
                                 ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rich/RichCigar.scala:43: warning: discarding unmoored doc comment
    /**
    ^
warning: there were 5 feature warnings; re-run with -feature for details
model contains 283 documentable templates
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/models/ReadGroupDictionary.scala:47: warning: Could not find any member to link for "IllegalArgumentException".
/**
^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/util/AttributeUtils.scala:70: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicDataset.scala:747: warning: Variable x undefined in comment for method pipe in trait GenomicDataset
   * Files are substituted in to the command with a $x syntax. E.g., to invoke
                                                     ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicDataset.scala:748: warning: Variable 0 undefined in comment for method pipe in trait GenomicDataset
   * a command that uses the first file from the files Seq, use $0. To access
                                                                 ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicDataset.scala:749: warning: Variable root undefined in comment for method pipe in trait GenomicDataset
   * the path to the directory where the files are copied, use $root.
                                                                ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicPartitioners.scala:178: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicPartitioners.scala:75: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala:3464: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala:1859: warning: Could not find any member to link for "FileNotFoundException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala:1839: warning: Could not find any member to link for "FileNotFoundException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala:1810: warning: Could not find any member to link for "FileNotFoundException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/projections/Projection.scala:45: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala:474: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala:444: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala:429: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala:354: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala:258: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala:242: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/models/Alphabet.scala:44: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/main/java/org/bdgenomics/adam/io/FastqRecordReader.java:377: warning: Could not find any member to link for "RuntimeException".
    /**
    ^
24 warnings found
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/adam-core-spark3_2.12-0.33.0-SNAPSHOT-javadoc.jar
[INFO] 
[INFO] --- maven-jar-plugin:3.2.0:test-jar (default) @ adam-core-spark3_2.12 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/adam-core-spark3_2.12-0.33.0-SNAPSHOT-tests.jar
[INFO] 
[INFO] -------------< org.bdgenomics.adam:adam-apis-spark3_2.12 >--------------
[INFO] Building ADAM_2.12: APIs for Java, Python 0.33.0-SNAPSHOT          [5/8]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-apis-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-apis-spark3_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-apis-spark3_2.12 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-apis/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-apis-spark3_2.12 ---
[INFO] Modified 0 of 5 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-apis-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-apis/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-apis-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-apis-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-apis-spark3_2.12 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-apis/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-apis-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 2 resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-apis-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-apis-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-apis-spark3_2.12 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-apis-spark3_2.12 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ adam-apis-spark3_2.12 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-apis/target/adam-apis-spark3_2.12-0.33.0-SNAPSHOT.jar
[INFO] 
[INFO] --- maven-source-plugin:3.0.1:jar-no-fork (attach-sources) @ adam-apis-spark3_2.12 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-apis/target/adam-apis-spark3_2.12-0.33.0-SNAPSHOT-sources.jar
[INFO] 
[INFO] --- maven-javadoc-plugin:3.1.0:jar (attach-javadoc) @ adam-apis-spark3_2.12 ---
[INFO] 
[INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ adam-apis-spark3_2.12 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-apis-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-apis-spark3_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-apis-spark3_2.12 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-apis/src/main/scala added.
[INFO] 
[INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ adam-apis-spark3_2.12 <<<
[INFO] 
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ adam-apis-spark3_2.12 ---
warning: there were two feature warnings; re-run with -feature for details
model contains 192 documentable templates
one warning found
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-apis/target/adam-apis-spark3_2.12-0.33.0-SNAPSHOT-javadoc.jar
[INFO] 
[INFO] --- maven-jar-plugin:3.2.0:test-jar (default) @ adam-apis-spark3_2.12 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-apis/target/adam-apis-spark3_2.12-0.33.0-SNAPSHOT-tests.jar
[INFO] 
[INFO] --------------< org.bdgenomics.adam:adam-cli-spark3_2.12 >--------------
[INFO] Building ADAM_2.12: CLI 0.33.0-SNAPSHOT                            [6/8]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-cli-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-cli-spark3_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:timestamp-property (timestamp-property) @ adam-cli-spark3_2.12 ---
[INFO] 
[INFO] --- git-commit-id-plugin:2.2.2:revision (default) @ adam-cli-spark3_2.12 ---
[INFO] 
[INFO] --- templating-maven-plugin:1.0.0:filter-sources (filter-src) @ adam-cli-spark3_2.12 ---
[INFO] Coping files with filtering to temporary directory.
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 1 resource
[INFO] No files needs to be copied to output directory. Up to date: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/target/generated-sources/java-templates
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/target/generated-sources/java-templates added.
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-cli-spark3_2.12 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-cli-spark3_2.12 ---
[INFO] Modified 0 of 29 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-cli-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-cli-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-cli-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-cli-spark3_2.12 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-cli-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 15 resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-cli-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-cli-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-cli-spark3_2.12 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-cli-spark3_2.12 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ adam-cli-spark3_2.12 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/target/adam-cli-spark3_2.12-0.33.0-SNAPSHOT.jar
[INFO] 
[INFO] --- maven-source-plugin:3.0.1:jar-no-fork (attach-sources) @ adam-cli-spark3_2.12 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/target/adam-cli-spark3_2.12-0.33.0-SNAPSHOT-sources.jar
[INFO] 
[INFO] --- maven-javadoc-plugin:3.1.0:jar (attach-javadoc) @ adam-cli-spark3_2.12 ---
[INFO] The goal 'org.apache.maven.plugins:maven-javadoc-plugin:3.1.0:javadoc' has not been previously called for the module: 'org.bdgenomics.adam:adam-apis-spark3_2.12:jar:0.33.0-SNAPSHOT'. Trying to invoke it...
OpenJDK 64-Bit Server VM warning: ignoring option MaxPermSize=1g; support was removed in 8.0
[WARNING] Creating fake javadoc directory to prevent repeated invocations: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-apis/target/apidocs
[ERROR] Error fetching link: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-apis/target/apidocs. Ignored it.
[INFO] 
Loading source files for package org.bdgenomics.adam.cli...
Constructing Javadoc information...
Standard Doclet version 1.8.0_222
Building tree for all the packages and classes...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/target/apidocs/org/bdgenomics/adam/cli/About.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/target/apidocs/org/bdgenomics/adam/cli/package-frame.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/target/apidocs/org/bdgenomics/adam/cli/package-summary.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/target/apidocs/org/bdgenomics/adam/cli/package-tree.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/target/apidocs/constant-values.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/target/apidocs/org/bdgenomics/adam/cli/class-use/About.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/target/apidocs/org/bdgenomics/adam/cli/package-use.html...
Building index for all the packages and classes...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/target/apidocs/overview-tree.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/target/apidocs/index-all.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/target/apidocs/deprecated-list.html...
Building index for all classes...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/target/apidocs/allclasses-frame.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/target/apidocs/allclasses-noframe.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/target/apidocs/index.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/target/apidocs/help-doc.html...
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/target/adam-cli-spark3_2.12-0.33.0-SNAPSHOT-javadoc.jar
[INFO] 
[INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ adam-cli-spark3_2.12 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-cli-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-cli-spark3_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:timestamp-property (timestamp-property) @ adam-cli-spark3_2.12 ---
[INFO] 
[INFO] --- git-commit-id-plugin:2.2.2:revision (default) @ adam-cli-spark3_2.12 ---
[INFO] 
[INFO] --- templating-maven-plugin:1.0.0:filter-sources (filter-src) @ adam-cli-spark3_2.12 ---
[INFO] Coping files with filtering to temporary directory.
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 1 resource
[INFO] No files needs to be copied to output directory. Up to date: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/target/generated-sources/java-templates
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/target/generated-sources/java-templates added.
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-cli-spark3_2.12 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/src/main/scala added.
[INFO] 
[INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ adam-cli-spark3_2.12 <<<
[INFO] 
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ adam-cli-spark3_2.12 ---
model contains 55 documentable templates
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/target/adam-cli-spark3_2.12-0.33.0-SNAPSHOT-javadoc.jar
[INFO] 
[INFO] -----------< org.bdgenomics.adam:adam-assembly-spark3_2.12 >------------
[INFO] Building ADAM_2.12: Assembly 0.33.0-SNAPSHOT                       [7/8]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-assembly-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-assembly-spark3_2.12 ---
[INFO] 
[INFO] --- git-commit-id-plugin:2.2.2:revision (default) @ adam-assembly-spark3_2.12 ---
[INFO] 
[INFO] --- templating-maven-plugin:1.0.0:filter-sources (filter-src) @ adam-assembly-spark3_2.12 ---
[INFO] Request to add '/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-assembly/src/main/java-templates' folder. Not added since it does not exist.
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-assembly-spark3_2.12 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-assembly/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-assembly-spark3_2.12 ---
[INFO] Modified 0 of 1 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-assembly-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-assembly/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-assembly-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-assembly-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-assembly-spark3_2.12 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-assembly/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-assembly-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-assembly/src/test/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-assembly-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-assembly-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-assembly-spark3_2.12 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ adam-assembly-spark3_2.12 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-assembly/target/adam-assembly-spark3_2.12-0.33.0-SNAPSHOT.jar
[INFO] 
[INFO] --- maven-source-plugin:3.0.1:jar-no-fork (attach-sources) @ adam-assembly-spark3_2.12 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-assembly/target/adam-assembly-spark3_2.12-0.33.0-SNAPSHOT-sources.jar
[INFO] 
[INFO] --- maven-javadoc-plugin:3.1.0:jar (attach-javadoc) @ adam-assembly-spark3_2.12 ---
[INFO] 
[INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ adam-assembly-spark3_2.12 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-assembly-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-assembly-spark3_2.12 ---
[INFO] 
[INFO] --- git-commit-id-plugin:2.2.2:revision (default) @ adam-assembly-spark3_2.12 ---
[INFO] 
[INFO] --- templating-maven-plugin:1.0.0:filter-sources (filter-src) @ adam-assembly-spark3_2.12 ---
[INFO] Request to add '/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-assembly/src/main/java-templates' folder. Not added since it does not exist.
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-assembly-spark3_2.12 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-assembly/src/main/scala added.
[INFO] 
[INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ adam-assembly-spark3_2.12 <<<
[INFO] 
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ adam-assembly-spark3_2.12 ---
model contains 6 documentable templates
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-assembly/target/adam-assembly-spark3_2.12-0.33.0-SNAPSHOT-javadoc.jar
[INFO] 
[INFO] --- maven-shade-plugin:3.2.0:shade (default) @ adam-assembly-spark3_2.12 ---
[INFO] Including org.bdgenomics.adam:adam-cli-spark3_2.12:jar:0.33.0-SNAPSHOT in the shaded jar.
[INFO] Including org.bdgenomics.utils:utils-misc-spark3_2.12:jar:0.3.0 in the shaded jar.
[INFO] Including org.bdgenomics.utils:utils-io-spark3_2.12:jar:0.3.0 in the shaded jar.
[INFO] Including org.apache.httpcomponents:httpclient:jar:4.5.7 in the shaded jar.
[INFO] Including org.apache.httpcomponents:httpcore:jar:4.4.11 in the shaded jar.
[INFO] Including commons-logging:commons-logging:jar:1.2 in the shaded jar.
[INFO] Including commons-codec:commons-codec:jar:1.11 in the shaded jar.
[INFO] Including org.bdgenomics.utils:utils-cli-spark3_2.12:jar:0.3.0 in the shaded jar.
[INFO] Including org.clapper:grizzled-slf4j_2.12:jar:1.3.4 in the shaded jar.
[INFO] Including org.slf4j:slf4j-api:jar:1.7.30 in the shaded jar.
[INFO] Including org.apache.parquet:parquet-avro:jar:1.10.1 in the shaded jar.
[INFO] Including org.apache.parquet:parquet-column:jar:1.10.1 in the shaded jar.
[INFO] Including org.apache.parquet:parquet-common:jar:1.10.1 in the shaded jar.
[INFO] Including org.apache.parquet:parquet-encoding:jar:1.10.1 in the shaded jar.
[INFO] Including org.apache.parquet:parquet-hadoop:jar:1.10.1 in the shaded jar.
[INFO] Including org.apache.parquet:parquet-jackson:jar:1.10.1 in the shaded jar.
[INFO] Including commons-pool:commons-pool:jar:1.6 in the shaded jar.
[INFO] Including org.apache.parquet:parquet-format:jar:2.4.0 in the shaded jar.
[INFO] Including org.bdgenomics.bdg-formats:bdg-formats:jar:0.15.0 in the shaded jar.
[INFO] Including org.apache.avro:avro:jar:1.8.2 in the shaded jar.
[INFO] Including org.codehaus.jackson:jackson-core-asl:jar:1.9.13 in the shaded jar.
[INFO] Including org.codehaus.jackson:jackson-mapper-asl:jar:1.9.13 in the shaded jar.
[INFO] Including com.thoughtworks.paranamer:paranamer:jar:2.8 in the shaded jar.
[INFO] Including org.xerial.snappy:snappy-java:jar:1.1.1.3 in the shaded jar.
[INFO] Including org.apache.commons:commons-compress:jar:1.8.1 in the shaded jar.
[INFO] Including org.tukaani:xz:jar:1.5 in the shaded jar.
[INFO] Including org.bdgenomics.adam:adam-core-spark3_2.12:jar:0.33.0-SNAPSHOT in the shaded jar.
[INFO] Including org.bdgenomics.utils:utils-intervalrdd-spark3_2.12:jar:0.3.0 in the shaded jar.
[INFO] Including com.esotericsoftware.kryo:kryo:jar:2.24.0 in the shaded jar.
[INFO] Including com.esotericsoftware.minlog:minlog:jar:1.2 in the shaded jar.
[INFO] Including org.objenesis:objenesis:jar:2.1 in the shaded jar.
[INFO] Including commons-io:commons-io:jar:2.6 in the shaded jar.
[INFO] Including it.unimi.dsi:fastutil:jar:6.6.5 in the shaded jar.
[INFO] Including org.seqdoop:hadoop-bam:jar:7.9.2 in the shaded jar.
[INFO] Including com.github.jsr203hadoop:jsr203hadoop:jar:1.0.3 in the shaded jar.
[INFO] Including com.github.samtools:htsjdk:jar:2.19.0 in the shaded jar.
[INFO] Including org.apache.commons:commons-jexl:jar:2.1.1 in the shaded jar.
[INFO] Including gov.nih.nlm.ncbi:ngs-java:jar:2.9.0 in the shaded jar.
[INFO] Including com.google.guava:guava:jar:27.0-jre in the shaded jar.
[INFO] Including com.google.guava:failureaccess:jar:1.0 in the shaded jar.
[INFO] Including com.google.guava:listenablefuture:jar:9999.0-empty-to-avoid-conflict-with-guava in the shaded jar.
[INFO] Including org.checkerframework:checker-qual:jar:2.5.2 in the shaded jar.
[INFO] Including com.google.errorprone:error_prone_annotations:jar:2.2.0 in the shaded jar.
[INFO] Including com.google.j2objc:j2objc-annotations:jar:1.1 in the shaded jar.
[INFO] Including org.codehaus.mojo:animal-sniffer-annotations:jar:1.17 in the shaded jar.
[INFO] Including org.bdgenomics.adam:adam-codegen-spark3_2.12:jar:0.33.0-SNAPSHOT in the shaded jar.
[INFO] Including org.bdgenomics.adam:adam-apis-spark3_2.12:jar:0.33.0-SNAPSHOT in the shaded jar.
[INFO] Including args4j:args4j:jar:2.33 in the shaded jar.
[INFO] Including net.codingwell:scala-guice_2.12:jar:4.2.1 in the shaded jar.
[INFO] Including com.google.inject:guice:jar:4.2.0 in the shaded jar.
[INFO] Including javax.inject:javax.inject:jar:1 in the shaded jar.
[INFO] Including aopalliance:aopalliance:jar:1.0 in the shaded jar.
[INFO] Including org.scala-lang:scala-reflect:jar:2.12.6 in the shaded jar.
[INFO] Including com.google.code.findbugs:jsr305:jar:1.3.9 in the shaded jar.
[WARNING] WORKAROUND:  refusing to add class org/apache/parquet/avro/AvroSchemaConverter$2.class from jar /home/jenkins/.m2/repository/org/apache/parquet/parquet-avro/1.10.1/parquet-avro-1.10.1.jar
[WARNING] WORKAROUND:  refusing to add class org/apache/parquet/avro/AvroSchemaConverter.class from jar /home/jenkins/.m2/repository/org/apache/parquet/parquet-avro/1.10.1/parquet-avro-1.10.1.jar
[WARNING] WORKAROUND:  refusing to add class org/apache/parquet/avro/AvroSchemaConverter$1.class from jar /home/jenkins/.m2/repository/org/apache/parquet/parquet-avro/1.10.1/parquet-avro-1.10.1.jar
[WARNING] guava-27.0-jre.jar, failureaccess-1.0.jar define 2 overlapping classes: 
[WARNING]   - com.google.common.util.concurrent.internal.InternalFutureFailureAccess
[WARNING]   - com.google.common.util.concurrent.internal.InternalFutures
[WARNING] maven-shade-plugin has detected that some class files are
[WARNING] present in two or more JARs. When this happens, only one
[WARNING] single version of the class is copied to the uber jar.
[WARNING] Usually this is not harmful and you can skip these warnings,
[WARNING] otherwise try to manually exclude artifacts based on
[WARNING] mvn dependency:tree -Ddetail=true and the above output.
[WARNING] See http://maven.apache.org/plugins/maven-shade-plugin/
[INFO] Replacing original artifact with shaded artifact.
[INFO] Replacing /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-assembly/target/adam-assembly-spark3_2.12-0.33.0-SNAPSHOT.jar with /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-assembly/target/adam-assembly-spark3_2.12-0.33.0-SNAPSHOT-shaded.jar
[INFO] 
[INFO] ---------< org.bdgenomics.adam:adam-distribution-spark3_2.12 >----------
[INFO] Building ADAM_2.12: Distribution 0.33.0-SNAPSHOT                   [8/8]
[INFO] --------------------------------[ pom ]---------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-distribution-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-distribution-spark3_2.12 ---
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-distribution-spark3_2.12 ---
[INFO] Modified 0 of 0 .scala files
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-distribution-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-distribution-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-source-plugin:3.0.1:jar-no-fork (attach-sources) @ adam-distribution-spark3_2.12 ---
[INFO] 
[INFO] --- maven-javadoc-plugin:3.1.0:jar (attach-javadoc) @ adam-distribution-spark3_2.12 ---
[INFO] 
[INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ adam-distribution-spark3_2.12 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-distribution-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-distribution-spark3_2.12 ---
[INFO] 
[INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ adam-distribution-spark3_2.12 <<<
[INFO] 
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ adam-distribution-spark3_2.12 ---
[INFO] No source files found
[INFO] 
[INFO] --- maven-assembly-plugin:3.2.0:single (default) @ adam-distribution-spark3_2.12 ---
[INFO] Reading assembly descriptor: src/main/assembly/assembly.xml
[INFO] Building tar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-distribution/target/adam-distribution-spark3_2.12-0.33.0-SNAPSHOT-bin.tar.gz
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/smithwaterman/ longer than 100 characters.
[WARNING] Resulting tar file can only be processed successfully by GNU compatible tar commands
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/apache/parquet/avro/AvroSchemaConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/consensus/ConsensusGenerator$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/consensus/ConsensusGenerator.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/consensus/index.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/smithwaterman/SmithWatermanConstantGapScoring.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/smithwaterman/SmithWaterman.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/smithwaterman/index.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantAnnotation.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantContext$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantCallingAnnotations.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/ProcessingStep$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantAnnotation$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantCallingAnnotations$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/TranscriptEffect$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/TranscriptEffect.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/AvroSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/ADAMKryoRegistrator.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/InputStreamWithDecoder.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/index.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/WritableSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/Filter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/OntologyTermField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/SampleField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/VariantCallingAnnotationsField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FieldEnumeration.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/ReadField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/ReadGroupField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/SliceField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FragmentField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/TranscriptEffectField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FieldValue.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/ReferenceField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FeatureField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/VariantAnnotationField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/AlignmentField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/GenotypeField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/Projection$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FieldEnumeration$SchemaVal.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/SequenceField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/DbxrefField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/VariantField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rich/RichAlignment$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/io/SingleFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/io/FastqRecordReader.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/io/FastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/io/InterleavedFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicPositionPartitioner$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/LeftOuterShuffleRegionJoinAndGroupByLeft.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/VictimlessSortedIntervalPartitionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicDatasetWithLineage.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/MultisampleGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/RightOuterTreeRegionJoinAndGroupByRight.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InnerTreeRegionJoinAndGroupByRight.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/RightOuterTreeRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/ShuffleRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/FullOuterShuffleRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/MultisampleAvroGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GFF3InFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/NarrowPeakInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GTFInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/RDDBoundCoverageDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/CoverageDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/NarrowPeakInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/BEDInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/NarrowPeakOutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/BEDInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/FeatureDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GFF3OutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/DatasetBoundCoverageDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/RDDBoundFeatureDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/FeatureDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/CoverageDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/ParquetUnboundFeatureDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GTFInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/BEDOutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GFF3InFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/DatasetBoundFeatureDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/ParquetUnboundCoverageDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GTFOutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/LeftOuterShuffleRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicRegionPartitioner$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/ParquetUnboundFragmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/InterleavedFASTQInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/Tab6InFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/FragmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/Tab6InFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/Tab5InFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/RDDBoundFragmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/FragmentDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/DatasetBoundFragmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/InterleavedFASTQInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/Tab5InFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/ADAMSaveAnyArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/RDDBoundGenotypeDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/ParquetUnboundVariantDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VariantContextDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VariantContextDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VariantDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VCFOutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/GenotypeDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/RDDBoundVariantContextDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VCFInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/DatasetBoundVariantContextDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/ADAMVCFOutputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/ParquetUnboundGenotypeDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VariantDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/GenotypeDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VCFInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/RDDBoundVariantDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/DatasetBoundGenotypeDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/DatasetBoundVariantDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/AvroGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/RightOuterShuffleRegionJoinAndGroupByLeft.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InFormatterCompanion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/SortedIntervalPartitionJoinWithVictims.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicBroadcast.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ParquetUnboundAlignmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/FASTQInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/BAMInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/SAMInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/IncorrectMDTagException.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ReferencePositionPairSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/QualityScoreBin$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ReadDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/SingleReadBucketSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMBAMOutputFormatHeaderLess.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/FASTQInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AnySAMInFormatterCompanion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ReadDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AnySAMInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/DatasetBoundReadDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/RDDBoundReadDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/QualityScoreBin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/DatasetBoundAlignmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AlignmentDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AlignmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AnySAMOutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/BAMInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMCRAMOutputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/SAMInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ParquetUnboundReadDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMSAMOutputFormatHeaderLess.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMSAMOutputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMBAMOutputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMCRAMOutputFormatHeaderLess.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/RDDBoundAlignmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenericGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenericConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicPositionPartitioner.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InnerShuffleRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/RDDBoundGenericGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/DatasetBoundGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicRegionPartitioner.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/DatasetBoundGenericGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InnerShuffleRegionJoinAndGroupByLeft.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/ReferencePartitioner.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/AvroReadGroupGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/SequenceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/SequenceDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/DatasetBoundSliceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/SliceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/ParquetUnboundSequenceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/FASTAInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/RDDBoundSliceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/FASTAInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/DatasetBoundSequenceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/SliceDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/ParquetUnboundSliceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/RDDBoundSequenceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InnerTreeRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ParquetFileTraversable.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/AttributeUtils$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/FileExtensions$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ParquetLogger$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ReferenceContigMap$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ReferenceContigMap.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ReferenceContigMapSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/GenomeFileReader$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/SequenceDictionaryReader$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/IndexedFastaFile.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/TextRddWriter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/TwoBitFileSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/converters/VariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/converters/AlignmentConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/converters/DefaultHeaderLines$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/converters/VariantContextConverter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/PositionOrdering$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/SequenceDictionary.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferenceRegion$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferenceOrdering.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/SequenceRecord$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/TagType$$TypeVal.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/SequenceDictionary$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferenceRegion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferencePosition$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/VariantContext$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/VariantContext.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/OptionalRegionOrdering$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferenceRegionSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/RegionOrdering$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/SequenceRecord.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/OptionalPositionOrdering$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReadGroupDictionary$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferencePositionSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/VariantContextSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/OptionalReferenceOrdering.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferencePosition.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReadGroupDictionary.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/javadocs/org/apache/parquet/avro/AvroSchemaConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/javadocs/org/apache/parquet/avro/class-use/AvroSchemaConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/SingleFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/FastqRecordReader.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/InterleavedFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/class-use/SingleFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/class-use/FastqRecordReader.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/class-use/FastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/class-use/InterleavedFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/python/DataFrameConversionWrapper.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToVariantContextsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToVariantContextsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToSequenceDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/JavaADAMContext$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToVariantContextsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/JavaADAMContext.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToCoverageDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToFeatureDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToFragmentDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToGenotypeDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToAlignmentDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToFeatureConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToVariantContextDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToSliceDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToReadDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToVariantDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFragments$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSlicesArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformGenotypes$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSlices$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFeatures.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFragments.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountSliceKmers$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSequences$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountReadKmersArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFeatures$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformAlignments.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformGenotypes.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/MergeShardsArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFragmentsArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformVariantsArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformVariants$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSequencesArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformGenotypesArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformAlignments$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSlices.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountSliceKmersArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformVariants.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFeaturesArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformAlignmentsArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountSliceKmers.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSequences.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountReadKmers$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/repo/adam-assembly-spark3_2.12-0.33.0-SNAPSHOT-sources.jar longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/repo/adam-assembly-spark3_2.12-0.33.0-SNAPSHOT-javadoc.jar longer than 100 characters.
[INFO] Building tar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-distribution/target/adam-distribution-spark3_2.12-0.33.0-SNAPSHOT-bin.tar.bz2
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/smithwaterman/ longer than 100 characters.
[WARNING] Resulting tar file can only be processed successfully by GNU compatible tar commands
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/apache/parquet/avro/AvroSchemaConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/consensus/ConsensusGenerator$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/consensus/ConsensusGenerator.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/consensus/index.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/smithwaterman/SmithWatermanConstantGapScoring.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/smithwaterman/SmithWaterman.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/smithwaterman/index.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantAnnotation.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantContext$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantCallingAnnotations.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/ProcessingStep$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantAnnotation$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantCallingAnnotations$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/TranscriptEffect$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/TranscriptEffect.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/AvroSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/ADAMKryoRegistrator.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/InputStreamWithDecoder.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/index.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/WritableSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/Filter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/OntologyTermField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/SampleField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/VariantCallingAnnotationsField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FieldEnumeration.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/ReadField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/ReadGroupField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/SliceField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FragmentField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/TranscriptEffectField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FieldValue.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/ReferenceField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FeatureField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/VariantAnnotationField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/AlignmentField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/GenotypeField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/Projection$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FieldEnumeration$SchemaVal.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/SequenceField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/DbxrefField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/VariantField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rich/RichAlignment$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/io/SingleFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/io/FastqRecordReader.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/io/FastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/io/InterleavedFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicPositionPartitioner$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/LeftOuterShuffleRegionJoinAndGroupByLeft.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/VictimlessSortedIntervalPartitionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicDatasetWithLineage.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/MultisampleGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/RightOuterTreeRegionJoinAndGroupByRight.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InnerTreeRegionJoinAndGroupByRight.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/RightOuterTreeRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/ShuffleRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/FullOuterShuffleRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/MultisampleAvroGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GFF3InFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/NarrowPeakInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GTFInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/RDDBoundCoverageDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/CoverageDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/NarrowPeakInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/BEDInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/NarrowPeakOutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/BEDInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/FeatureDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GFF3OutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/DatasetBoundCoverageDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/RDDBoundFeatureDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/FeatureDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/CoverageDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/ParquetUnboundFeatureDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GTFInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/BEDOutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GFF3InFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/DatasetBoundFeatureDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/ParquetUnboundCoverageDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GTFOutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/LeftOuterShuffleRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicRegionPartitioner$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/ParquetUnboundFragmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/InterleavedFASTQInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/Tab6InFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/FragmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/Tab6InFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/Tab5InFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/RDDBoundFragmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/FragmentDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/DatasetBoundFragmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/InterleavedFASTQInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/Tab5InFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/ADAMSaveAnyArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/RDDBoundGenotypeDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/ParquetUnboundVariantDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VariantContextDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VariantContextDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VariantDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VCFOutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/GenotypeDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/RDDBoundVariantContextDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VCFInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/DatasetBoundVariantContextDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/ADAMVCFOutputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/ParquetUnboundGenotypeDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VariantDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/GenotypeDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VCFInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/RDDBoundVariantDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/DatasetBoundGenotypeDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/DatasetBoundVariantDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/AvroGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/RightOuterShuffleRegionJoinAndGroupByLeft.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InFormatterCompanion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/SortedIntervalPartitionJoinWithVictims.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicBroadcast.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ParquetUnboundAlignmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/FASTQInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/BAMInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/SAMInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/IncorrectMDTagException.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ReferencePositionPairSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/QualityScoreBin$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ReadDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/SingleReadBucketSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMBAMOutputFormatHeaderLess.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/FASTQInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AnySAMInFormatterCompanion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ReadDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AnySAMInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/DatasetBoundReadDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/RDDBoundReadDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/QualityScoreBin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/DatasetBoundAlignmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AlignmentDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AlignmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AnySAMOutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/BAMInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMCRAMOutputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/SAMInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ParquetUnboundReadDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMSAMOutputFormatHeaderLess.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMSAMOutputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMBAMOutputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMCRAMOutputFormatHeaderLess.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/RDDBoundAlignmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenericGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenericConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicPositionPartitioner.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InnerShuffleRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/RDDBoundGenericGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/DatasetBoundGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicRegionPartitioner.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/DatasetBoundGenericGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InnerShuffleRegionJoinAndGroupByLeft.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/ReferencePartitioner.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/AvroReadGroupGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/SequenceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/SequenceDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/DatasetBoundSliceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/SliceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/ParquetUnboundSequenceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/FASTAInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/RDDBoundSliceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/FASTAInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/DatasetBoundSequenceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/SliceDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/ParquetUnboundSliceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/RDDBoundSequenceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InnerTreeRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ParquetFileTraversable.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/AttributeUtils$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/FileExtensions$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ParquetLogger$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ReferenceContigMap$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ReferenceContigMap.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ReferenceContigMapSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/GenomeFileReader$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/SequenceDictionaryReader$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/IndexedFastaFile.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/TextRddWriter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/TwoBitFileSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/converters/VariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/converters/AlignmentConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/converters/DefaultHeaderLines$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/converters/VariantContextConverter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/PositionOrdering$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/SequenceDictionary.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferenceRegion$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferenceOrdering.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/SequenceRecord$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/TagType$$TypeVal.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/SequenceDictionary$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferenceRegion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferencePosition$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/VariantContext$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/VariantContext.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/OptionalRegionOrdering$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferenceRegionSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/RegionOrdering$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/SequenceRecord.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/OptionalPositionOrdering$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReadGroupDictionary$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferencePositionSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/VariantContextSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/OptionalReferenceOrdering.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferencePosition.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReadGroupDictionary.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/javadocs/org/apache/parquet/avro/AvroSchemaConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/javadocs/org/apache/parquet/avro/class-use/AvroSchemaConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/SingleFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/FastqRecordReader.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/InterleavedFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/class-use/SingleFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/class-use/FastqRecordReader.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/class-use/FastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/class-use/InterleavedFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/python/DataFrameConversionWrapper.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToVariantContextsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToVariantContextsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToSequenceDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/JavaADAMContext$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToVariantContextsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/JavaADAMContext.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToCoverageDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToFeatureDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToFragmentDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToGenotypeDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToAlignmentDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToFeatureConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToVariantContextDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToSliceDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToReadDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToVariantDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFragments$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSlicesArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformGenotypes$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSlices$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFeatures.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFragments.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountSliceKmers$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSequences$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountReadKmersArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFeatures$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformAlignments.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformGenotypes.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/MergeShardsArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFragmentsArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformVariantsArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformVariants$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSequencesArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformGenotypesArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformAlignments$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSlices.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountSliceKmersArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformVariants.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFeaturesArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformAlignmentsArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountSliceKmers.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSequences.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountReadKmers$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/repo/adam-assembly-spark3_2.12-0.33.0-SNAPSHOT-sources.jar longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/repo/adam-assembly-spark3_2.12-0.33.0-SNAPSHOT-javadoc.jar longer than 100 characters.
[INFO] Building zip: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-distribution/target/adam-distribution-spark3_2.12-0.33.0-SNAPSHOT-bin.zip
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary for ADAM_2.12 0.33.0-SNAPSHOT:
[INFO] 
[INFO] ADAM_2.12 .......................................... SUCCESS [  7.481 s]
[INFO] ADAM_2.12: Shader workaround ....................... SUCCESS [  5.608 s]
[INFO] ADAM_2.12: Avro-to-Dataset codegen utils ........... SUCCESS [  4.498 s]
[INFO] ADAM_2.12: Core .................................... SUCCESS [01:10 min]
[INFO] ADAM_2.12: APIs for Java, Python ................... SUCCESS [ 12.381 s]
[INFO] ADAM_2.12: CLI ..................................... SUCCESS [ 18.628 s]
[INFO] ADAM_2.12: Assembly ................................ SUCCESS [ 12.809 s]
[INFO] ADAM_2.12: Distribution ............................ SUCCESS [ 33.353 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESS
[INFO] ------------------------------------------------------------------------
[INFO] Total time:  02:45 min
[INFO] Finished at: 2020-08-06T17:31:37-07:00
[INFO] ------------------------------------------------------------------------

# make sure that the distribution package contains an assembly jar
# if no assembly jar is found, this will exit with code 1 and fail the build
tar tzvf adam-distribution/target/adam-distribution*-bin.tar.gz | \
    grep adam-assembly | \
    grep jar | \
    grep -v -e sources -e javadoc 
+ tar tzvf adam-distribution/target/adam-distribution-spark3_2.12-0.33.0-SNAPSHOT-bin.tar.gz
+ grep adam-assembly
+ grep jar
+ grep -v -e sources -e javadoc
-rw-r--r-- jenkins/jenkins 40241522 2020-08-06 17:31 adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/repo/adam-assembly-spark3_2.12-0.33.0-SNAPSHOT.jar

# we are done with maven, so clean up the maven temp dir
find ${ADAM_MVN_TMP_DIR}
+ find /tmp/adamTestMvn1aEve53
/tmp/adamTestMvn1aEve53
/tmp/adamTestMvn1aEve53/TempSuite8417878121055060043.adam
/tmp/adamTestMvn1aEve53/TempSuite8417878121055060043.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite8417878121055060043.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite8417878121055060043.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite8417878121055060043.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite8417878121055060043.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite8417878121055060043.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite8417878121055060043.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite8417878121055060043.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite8417878121055060043.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite8417878121055060043.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite8417878121055060043.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite8417878121055060043.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/TempSuite8417878121055060043.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/TempSuite8417878121055060043.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite2749519311495914822
/tmp/adamTestMvn1aEve53/TempSuite3934065538933806182
/tmp/adamTestMvn1aEve53/TempSuite5885599526499452656
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite5898860761004472092
/tmp/adamTestMvn1aEve53/TempSuite1457957921031870497
/tmp/adamTestMvn1aEve53/javaAC8023683623880199129
/tmp/adamTestMvn1aEve53/javaAC8023683623880199129/testRdd.sequences.adam
/tmp/adamTestMvn1aEve53/javaAC8023683623880199129/testRdd.sequences.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/javaAC8023683623880199129/testRdd.sequences.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/javaAC8023683623880199129/testRdd.sequences.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/javaAC8023683623880199129/testRdd.sequences.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/javaAC8023683623880199129/testRdd.sequences.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/javaAC8023683623880199129/testRdd.sequences.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/javaAC8023683623880199129/testRdd.sequences.adam/_metadata
/tmp/adamTestMvn1aEve53/javaAC8023683623880199129/testRdd.sequences.adam/_common_metadata
/tmp/adamTestMvn1aEve53/javaAC8023683623880199129/testRdd.sequences.adam/_references.avro
/tmp/adamTestMvn1aEve53/javaAC8023683623880199129/testRdd.sequences.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite9220402808322999602
/tmp/adamTestMvn1aEve53/SliceDatasetSuite1765340611681090170.fasta
/tmp/adamTestMvn1aEve53/TempSuite6878649838386579161
/tmp/adamTestMvn1aEve53/TempSuite2380211456001576736.adam
/tmp/adamTestMvn1aEve53/TempSuite2380211456001576736.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite2380211456001576736.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite2380211456001576736.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite2380211456001576736.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite2380211456001576736.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite2380211456001576736.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite2380211456001576736.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite2380211456001576736.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite2380211456001576736.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite2380211456001576736.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite2380211456001576736.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite2380211456001576736.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/TempSuite2380211456001576736.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/TempSuite2380211456001576736.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite835159488380114516
/tmp/adamTestMvn1aEve53/TempSuite6334807964977505469.adam
/tmp/adamTestMvn1aEve53/TempSuite6334807964977505469.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite6334807964977505469.adam/part-00000-27849e0b-5525-4ef0-b189-724f5c23d294-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite6334807964977505469.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite6334807964977505469.adam/.part-00000-27849e0b-5525-4ef0-b189-724f5c23d294-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite6334807964977505469.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite6334807964977505469.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite6334807964977505469.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite6334807964977505469.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite6334807964977505469.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/TempSuite6334807964977505469.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/TempSuite1573667637541905727.adam
/tmp/adamTestMvn1aEve53/TempSuite1573667637541905727.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite1573667637541905727.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite1573667637541905727.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite1573667637541905727.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite1573667637541905727.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite1573667637541905727.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite1573667637541905727.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite1573667637541905727.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite1573667637541905727.adam/_samples.avro
/tmp/adamTestMvn1aEve53/TempSuite1573667637541905727.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite1573667637541905727.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite1573667637541905727.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite1573667637541905727.adam/_header
/tmp/adamTestMvn1aEve53/TempSuite1573667637541905727.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite2271119968002188919.adam
/tmp/adamTestMvn1aEve53/TempSuite2271119968002188919.adam/part-00000-3f79b4d4-43ea-4612-a09a-fb5420a3e011-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite2271119968002188919.adam/part-00002-3f79b4d4-43ea-4612-a09a-fb5420a3e011-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite2271119968002188919.adam/.part-00002-3f79b4d4-43ea-4612-a09a-fb5420a3e011-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite2271119968002188919.adam/.part-00001-3f79b4d4-43ea-4612-a09a-fb5420a3e011-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite2271119968002188919.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite2271119968002188919.adam/part-00001-3f79b4d4-43ea-4612-a09a-fb5420a3e011-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite2271119968002188919.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite2271119968002188919.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite2271119968002188919.adam/.part-00000-3f79b4d4-43ea-4612-a09a-fb5420a3e011-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite2271119968002188919.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite2271119968002188919.adam/_samples.avro
/tmp/adamTestMvn1aEve53/TempSuite2271119968002188919.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite2271119968002188919.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite2271119968002188919.adam/_header
/tmp/adamTestMvn1aEve53/.TempSuite6421240059772414751.sam.crc
/tmp/adamTestMvn1aEve53/.ReadDatasetSuite8465019912619617945.fastq.crc
/tmp/adamTestMvn1aEve53/TempSuite1005463921103329971.adam
/tmp/adamTestMvn1aEve53/TempSuite1005463921103329971.adam/part-00002-926d91fd-be3c-451d-b76f-37b20a1902e7-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite1005463921103329971.adam/.part-00000-926d91fd-be3c-451d-b76f-37b20a1902e7-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite1005463921103329971.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite1005463921103329971.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite1005463921103329971.adam/part-00000-926d91fd-be3c-451d-b76f-37b20a1902e7-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite1005463921103329971.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite1005463921103329971.adam/part-00001-926d91fd-be3c-451d-b76f-37b20a1902e7-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite1005463921103329971.adam/.part-00001-926d91fd-be3c-451d-b76f-37b20a1902e7-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite1005463921103329971.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite1005463921103329971.adam/.part-00002-926d91fd-be3c-451d-b76f-37b20a1902e7-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite1808220779183221623.2.adam
/tmp/adamTestMvn1aEve53/TempSuite1808220779183221623.2.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite1808220779183221623.2.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite1808220779183221623.2.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite1808220779183221623.2.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite1808220779183221623.2.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite1808220779183221623.2.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite1808220779183221623.2.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite1808220779183221623.2.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite1808220779183221623.2.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite1808220779183221623.2.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite1808220779183221623.2.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite1808220779183221623.2.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/TempSuite1808220779183221623.2.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/TempSuite1808220779183221623.2.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite728029212391075715.adam
/tmp/adamTestMvn1aEve53/TempSuite728029212391075715.adam/.part-00000-f2b5babf-eb43-4eaf-a306-42ca8e06dbf9-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite728029212391075715.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite728029212391075715.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite728029212391075715.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite728029212391075715.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite728029212391075715.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite728029212391075715.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite728029212391075715.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/TempSuite728029212391075715.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/TempSuite728029212391075715.adam/part-00000-f2b5babf-eb43-4eaf-a306-42ca8e06dbf9-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite4063325845851802261.adam
/tmp/adamTestMvn1aEve53/TempSuite4063325845851802261.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite4063325845851802261.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite4063325845851802261.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite4063325845851802261.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite4063325845851802261.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite4063325845851802261.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite4063325845851802261.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite4063325845851802261.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite4063325845851802261.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite4063325845851802261.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite4063325845851802261.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite4063325845851802261.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/TempSuite4063325845851802261.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/TempSuite4063325845851802261.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/unordered.sam5042478075802363936.sam
/tmp/adamTestMvn1aEve53/TempSuite4113408698035014431.adam
/tmp/adamTestMvn1aEve53/TempSuite4113408698035014431.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite4113408698035014431.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite4113408698035014431.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite4113408698035014431.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite4113408698035014431.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite4113408698035014431.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite4113408698035014431.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite4113408698035014431.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite4113408698035014431.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite4113408698035014431.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite4113408698035014431.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite4113408698035014431.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/TempSuite4113408698035014431.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/TempSuite4113408698035014431.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite4803879394990338052.sam
/tmp/adamTestMvn1aEve53/TempSuite4803879394990338052.sam/part-r-00000.sam
/tmp/adamTestMvn1aEve53/TempSuite4803879394990338052.sam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite4803879394990338052.sam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite4803879394990338052.sam/.part-r-00000.sam.crc
/tmp/adamTestMvn1aEve53/TempSuite8913675157487809814.adam
/tmp/adamTestMvn1aEve53/TempSuite8913675157487809814.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite8913675157487809814.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite8913675157487809814.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite8913675157487809814.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite8913675157487809814.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite8913675157487809814.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite8913675157487809814.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite8913675157487809814.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite8913675157487809814.adam/_samples.avro
/tmp/adamTestMvn1aEve53/TempSuite8913675157487809814.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite8913675157487809814.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite8913675157487809814.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite8913675157487809814.adam/_header
/tmp/adamTestMvn1aEve53/TempSuite8913675157487809814.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite5447418965871376630.adam
/tmp/adamTestMvn1aEve53/TempSuite5447418965871376630.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite5447418965871376630.adam/part-r-00001.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite5447418965871376630.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite5447418965871376630.adam/part-r-00002.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite5447418965871376630.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite5447418965871376630.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite5447418965871376630.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite5447418965871376630.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite5447418965871376630.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite5447418965871376630.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite5447418965871376630.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite5447418965871376630.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite5447418965871376630.adam/_samples.avro
/tmp/adamTestMvn1aEve53/TempSuite5447418965871376630.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite5447418965871376630.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite5447418965871376630.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite5447418965871376630.adam/part-r-00003.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite5447418965871376630.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite8358875628545310369
/tmp/adamTestMvn1aEve53/random.vcf5540343923308467931.vcf
/tmp/adamTestMvn1aEve53/TempSuite7114424662366208336.adam
/tmp/adamTestMvn1aEve53/TempSuite7114424662366208336.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite7114424662366208336.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite7114424662366208336.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite7114424662366208336.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite7114424662366208336.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite7114424662366208336.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite7114424662366208336.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite7114424662366208336.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite7114424662366208336.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite7114424662366208336.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite7114424662366208336.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite7114424662366208336.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/TempSuite7114424662366208336.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/TempSuite7114424662366208336.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite9220402808322999602.adam
/tmp/adamTestMvn1aEve53/TempSuite9220402808322999602.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite9220402808322999602.adam/part-r-00001.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite9220402808322999602.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite9220402808322999602.adam/part-r-00002.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite9220402808322999602.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite9220402808322999602.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite9220402808322999602.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite9220402808322999602.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite9220402808322999602.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite9220402808322999602.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite9220402808322999602.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite9220402808322999602.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite9220402808322999602.adam/_samples.avro
/tmp/adamTestMvn1aEve53/TempSuite9220402808322999602.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite9220402808322999602.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite9220402808322999602.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite9220402808322999602.adam/part-r-00003.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite9220402808322999602.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite4426765172942422339.bed
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite4426765172942422339.bed/.part-00001.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite4426765172942422339.bed/.part-00003.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite4426765172942422339.bed/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite4426765172942422339.bed/part-00003
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite4426765172942422339.bed/.part-00000.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite4426765172942422339.bed/part-00000
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite4426765172942422339.bed/part-00002
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite4426765172942422339.bed/_SUCCESS
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite4426765172942422339.bed/part-00001
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite4426765172942422339.bed/.part-00002.crc
/tmp/adamTestMvn1aEve53/TempSuite6577939890102397936.adam
/tmp/adamTestMvn1aEve53/TempSuite6577939890102397936.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite6577939890102397936.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite6577939890102397936.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite6577939890102397936.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite6577939890102397936.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite6577939890102397936.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite6577939890102397936.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite6577939890102397936.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite6577939890102397936.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite6577939890102397936.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite6577939890102397936.adam/_header
/tmp/adamTestMvn1aEve53/TempSuite6577939890102397936.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite8140531562032130487.adam
/tmp/adamTestMvn1aEve53/TempSuite8140531562032130487.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite8140531562032130487.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite8140531562032130487.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite8140531562032130487.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite8140531562032130487.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite8140531562032130487.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite8140531562032130487.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite8140531562032130487.adam/_samples.avro
/tmp/adamTestMvn1aEve53/TempSuite8140531562032130487.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite8140531562032130487.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite8140531562032130487.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite8140531562032130487.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite1248635869108427209.sam
/tmp/adamTestMvn1aEve53/TempSuite1248635869108427209.sam/part-r-00000.sam
/tmp/adamTestMvn1aEve53/TempSuite1248635869108427209.sam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite1248635869108427209.sam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite1248635869108427209.sam/.part-r-00000.sam.crc
/tmp/adamTestMvn1aEve53/TempSuite6943804717978830377
/tmp/adamTestMvn1aEve53/TempSuite8142855785214182747
/tmp/adamTestMvn1aEve53/ReadDatasetSuite3059043856135112832
/tmp/adamTestMvn1aEve53/TempSuite1115877555874346061
/tmp/adamTestMvn1aEve53/TempSuite8782119458409403577.adam
/tmp/adamTestMvn1aEve53/TempSuite8782119458409403577.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite8782119458409403577.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite8782119458409403577.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite8782119458409403577.adam/.part-00000-abb0359a-ebbb-4c8f-8c3a-2b220dd3ca31-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite8782119458409403577.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite8782119458409403577.adam/_samples.avro
/tmp/adamTestMvn1aEve53/TempSuite8782119458409403577.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite8782119458409403577.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite8782119458409403577.adam/_header
/tmp/adamTestMvn1aEve53/TempSuite8782119458409403577.adam/part-00000-abb0359a-ebbb-4c8f-8c3a-2b220dd3ca31-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite9155445969933055215
/tmp/adamTestMvn1aEve53/TempSuite7557298150246705877
/tmp/adamTestMvn1aEve53/javaAC6280954430088319809
/tmp/adamTestMvn1aEve53/javaAC6280954430088319809/testRdd.slices.adam
/tmp/adamTestMvn1aEve53/javaAC6280954430088319809/testRdd.slices.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/javaAC6280954430088319809/testRdd.slices.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/javaAC6280954430088319809/testRdd.slices.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/javaAC6280954430088319809/testRdd.slices.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/javaAC6280954430088319809/testRdd.slices.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/javaAC6280954430088319809/testRdd.slices.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/javaAC6280954430088319809/testRdd.slices.adam/_metadata
/tmp/adamTestMvn1aEve53/javaAC6280954430088319809/testRdd.slices.adam/_common_metadata
/tmp/adamTestMvn1aEve53/javaAC6280954430088319809/testRdd.slices.adam/_references.avro
/tmp/adamTestMvn1aEve53/javaAC6280954430088319809/testRdd.slices.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite7630193789728870818.adam
/tmp/adamTestMvn1aEve53/TempSuite7630193789728870818.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite7630193789728870818.adam/part-r-00001.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite7630193789728870818.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite7630193789728870818.adam/part-r-00002.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite7630193789728870818.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite7630193789728870818.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite7630193789728870818.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite7630193789728870818.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite7630193789728870818.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite7630193789728870818.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite7630193789728870818.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite7630193789728870818.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite7630193789728870818.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite7630193789728870818.adam/_samples.avro
/tmp/adamTestMvn1aEve53/TempSuite7630193789728870818.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite7630193789728870818.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite7630193789728870818.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite7630193789728870818.adam/part-r-00003.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite7630193789728870818.adam/_header
/tmp/adamTestMvn1aEve53/TempSuite7630193789728870818.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/5482530766186328693
/tmp/adamTestMvn1aEve53/5482530766186328693/.readname_sorted.sam.crc
/tmp/adamTestMvn1aEve53/5482530766186328693/readname_sorted.sam
/tmp/adamTestMvn1aEve53/5119006907244267648
/tmp/adamTestMvn1aEve53/5119006907244267648/variants.lex.adam
/tmp/adamTestMvn1aEve53/5119006907244267648/variants.lex.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/5119006907244267648/variants.lex.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/5119006907244267648/variants.lex.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/5119006907244267648/variants.lex.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/5119006907244267648/variants.lex.adam/._header.crc
/tmp/adamTestMvn1aEve53/5119006907244267648/variants.lex.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/5119006907244267648/variants.lex.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/5119006907244267648/variants.lex.adam/_metadata
/tmp/adamTestMvn1aEve53/5119006907244267648/variants.lex.adam/_common_metadata
/tmp/adamTestMvn1aEve53/5119006907244267648/variants.lex.adam/_references.avro
/tmp/adamTestMvn1aEve53/5119006907244267648/variants.lex.adam/_header
/tmp/adamTestMvn1aEve53/5119006907244267648/variants.lex.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite3961701284025693411.fq
/tmp/adamTestMvn1aEve53/TempSuite3961701284025693411.fq/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite3961701284025693411.fq/.part-00000.crc
/tmp/adamTestMvn1aEve53/TempSuite3961701284025693411.fq/part-00000
/tmp/adamTestMvn1aEve53/TempSuite3961701284025693411.fq/_SUCCESS
/tmp/adamTestMvn1aEve53/6097763807217781491
/tmp/adamTestMvn1aEve53/6097763807217781491/.ordered.sam.crc
/tmp/adamTestMvn1aEve53/6097763807217781491/ordered.sam
/tmp/adamTestMvn1aEve53/4909423797651901519
/tmp/adamTestMvn1aEve53/4909423797651901519/artificial.cram
/tmp/adamTestMvn1aEve53/4909423797651901519/artificial.cram/part-r-00000.cram
/tmp/adamTestMvn1aEve53/4909423797651901519/artificial.cram/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/4909423797651901519/artificial.cram/_SUCCESS
/tmp/adamTestMvn1aEve53/4909423797651901519/artificial.cram/.part-r-00000.cram.crc
/tmp/adamTestMvn1aEve53/bqsr12339808374144514937
/tmp/adamTestMvn1aEve53/bqsr12339808374144514937/.bqsr1.sam.crc
/tmp/adamTestMvn1aEve53/bqsr12339808374144514937/bqsr1.sam
/tmp/adamTestMvn1aEve53/TempSuite6421240059772414751
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite7433512683170543287
/tmp/adamTestMvn1aEve53/.FeatureDatasetFunctionsSuite2340738153887234465.bed.crc
/tmp/adamTestMvn1aEve53/TempSuite8102610516001389077
/tmp/adamTestMvn1aEve53/TempSuite6235267056489680102.adam
/tmp/adamTestMvn1aEve53/TempSuite6235267056489680102.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite6235267056489680102.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite6235267056489680102.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite6235267056489680102.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite6235267056489680102.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite6235267056489680102.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite6235267056489680102.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite6235267056489680102.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite6235267056489680102.adam/_samples.avro
/tmp/adamTestMvn1aEve53/TempSuite6235267056489680102.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite6235267056489680102.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite6235267056489680102.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite6235267056489680102.adam/_header
/tmp/adamTestMvn1aEve53/TempSuite6235267056489680102.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/7810769923008979195
/tmp/adamTestMvn1aEve53/7810769923008979195/genotypes.nested-annotations.adam
/tmp/adamTestMvn1aEve53/7810769923008979195/genotypes.nested-annotations.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/7810769923008979195/genotypes.nested-annotations.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/7810769923008979195/genotypes.nested-annotations.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/7810769923008979195/genotypes.nested-annotations.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/7810769923008979195/genotypes.nested-annotations.adam/._header.crc
/tmp/adamTestMvn1aEve53/7810769923008979195/genotypes.nested-annotations.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/7810769923008979195/genotypes.nested-annotations.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/7810769923008979195/genotypes.nested-annotations.adam/_metadata
/tmp/adamTestMvn1aEve53/7810769923008979195/genotypes.nested-annotations.adam/_samples.avro
/tmp/adamTestMvn1aEve53/7810769923008979195/genotypes.nested-annotations.adam/_common_metadata
/tmp/adamTestMvn1aEve53/7810769923008979195/genotypes.nested-annotations.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/7810769923008979195/genotypes.nested-annotations.adam/_references.avro
/tmp/adamTestMvn1aEve53/7810769923008979195/genotypes.nested-annotations.adam/_header
/tmp/adamTestMvn1aEve53/7810769923008979195/genotypes.nested-annotations.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite3132425633330768589
/tmp/adamTestMvn1aEve53/2280353339870551262
/tmp/adamTestMvn1aEve53/2280353339870551262/bqsr1.vcf.bgz
/tmp/adamTestMvn1aEve53/2280353339870551262/bqsr1.vcf.bgz/.part-r-00000.bgz.crc
/tmp/adamTestMvn1aEve53/2280353339870551262/bqsr1.vcf.bgz/.part-r-00003.bgz.crc
/tmp/adamTestMvn1aEve53/2280353339870551262/bqsr1.vcf.bgz/part-r-00000.bgz
/tmp/adamTestMvn1aEve53/2280353339870551262/bqsr1.vcf.bgz/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/2280353339870551262/bqsr1.vcf.bgz/.part-r-00001.bgz.crc
/tmp/adamTestMvn1aEve53/2280353339870551262/bqsr1.vcf.bgz/_SUCCESS
/tmp/adamTestMvn1aEve53/2280353339870551262/bqsr1.vcf.bgz/part-r-00001.bgz
/tmp/adamTestMvn1aEve53/2280353339870551262/bqsr1.vcf.bgz/part-r-00003.bgz
/tmp/adamTestMvn1aEve53/2280353339870551262/bqsr1.vcf.bgz/part-r-00002.bgz
/tmp/adamTestMvn1aEve53/2280353339870551262/bqsr1.vcf.bgz/.part-r-00002.bgz.crc
/tmp/adamTestMvn1aEve53/6721436990612171519
/tmp/adamTestMvn1aEve53/6721436990612171519/.ordered.sam.crc
/tmp/adamTestMvn1aEve53/6721436990612171519/ordered.sam
/tmp/adamTestMvn1aEve53/TempSuite2335899936241233874.adam
/tmp/adamTestMvn1aEve53/TempSuite2335899936241233874.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite2335899936241233874.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite2335899936241233874.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite2335899936241233874.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite2335899936241233874.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite2335899936241233874.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite2335899936241233874.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite2335899936241233874.adam/_samples.avro
/tmp/adamTestMvn1aEve53/TempSuite2335899936241233874.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite2335899936241233874.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite2335899936241233874.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite2335899936241233874.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite3455214934721113314
/tmp/adamTestMvn1aEve53/TempSuite8782119458409403577
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite378648223081797548.narrowPeak
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite378648223081797548.narrowPeak/.part-00001.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite378648223081797548.narrowPeak/.part-00003.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite378648223081797548.narrowPeak/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite378648223081797548.narrowPeak/part-00003
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite378648223081797548.narrowPeak/.part-00000.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite378648223081797548.narrowPeak/part-00000
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite378648223081797548.narrowPeak/part-00002
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite378648223081797548.narrowPeak/_SUCCESS
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite378648223081797548.narrowPeak/part-00001
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite378648223081797548.narrowPeak/.part-00002.crc
/tmp/adamTestMvn1aEve53/TempSuite9160145790145567259.adam
/tmp/adamTestMvn1aEve53/TempSuite9160145790145567259.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite9160145790145567259.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite9160145790145567259.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite9160145790145567259.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite9160145790145567259.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite9160145790145567259.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite9160145790145567259.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite9160145790145567259.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite9160145790145567259.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite9160145790145567259.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite9160145790145567259.adam/_header
/tmp/adamTestMvn1aEve53/TempSuite9160145790145567259.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite87125690128442850.bam
/tmp/adamTestMvn1aEve53/TempSuite87125690128442850.bam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite87125690128442850.bam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite87125690128442850.bam/.part-r-00000.bam.crc
/tmp/adamTestMvn1aEve53/TempSuite87125690128442850.bam/part-r-00000.bam
/tmp/adamTestMvn1aEve53/small.vcf7662754889072806855.vcf
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite5180918299770733893
/tmp/adamTestMvn1aEve53/TempSuite6524451882231327957.adam
/tmp/adamTestMvn1aEve53/TempSuite6524451882231327957.adam/part-00000-58562bea-7f12-43ee-8029-92432b2b523e-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite6524451882231327957.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite6524451882231327957.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite6524451882231327957.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite6524451882231327957.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite6524451882231327957.adam/.part-00000-58562bea-7f12-43ee-8029-92432b2b523e-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite6524451882231327957.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite6524451882231327957.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite6524451882231327957.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/TempSuite6524451882231327957.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/TempSuite9208155162472623284.fq
/tmp/adamTestMvn1aEve53/TempSuite9208155162472623284.fq/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite9208155162472623284.fq/.part-00000.crc
/tmp/adamTestMvn1aEve53/TempSuite9208155162472623284.fq/part-00000
/tmp/adamTestMvn1aEve53/TempSuite9208155162472623284.fq/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite1795100352682491134.adam
/tmp/adamTestMvn1aEve53/TempSuite1795100352682491134.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite1795100352682491134.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite1795100352682491134.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite1795100352682491134.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite1795100352682491134.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite1795100352682491134.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite1795100352682491134.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite1795100352682491134.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite1795100352682491134.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite1795100352682491134.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite1795100352682491134.adam/_header
/tmp/adamTestMvn1aEve53/TempSuite1795100352682491134.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite4273693618453294929
/tmp/adamTestMvn1aEve53/TempSuite731461564958848643.adam
/tmp/adamTestMvn1aEve53/TempSuite731461564958848643.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite731461564958848643.adam/part-r-00001.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite731461564958848643.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite731461564958848643.adam/part-r-00002.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite731461564958848643.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite731461564958848643.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite731461564958848643.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite731461564958848643.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite731461564958848643.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite731461564958848643.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite731461564958848643.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite731461564958848643.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite731461564958848643.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite731461564958848643.adam/_samples.avro
/tmp/adamTestMvn1aEve53/TempSuite731461564958848643.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite731461564958848643.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite731461564958848643.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite731461564958848643.adam/part-r-00003.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite731461564958848643.adam/_header
/tmp/adamTestMvn1aEve53/TempSuite731461564958848643.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite3586295251960155754
/tmp/adamTestMvn1aEve53/TempSuite2759580621021338189.fa
/tmp/adamTestMvn1aEve53/TempSuite2759580621021338189.fa/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite2759580621021338189.fa/.part-00000.crc
/tmp/adamTestMvn1aEve53/TempSuite2759580621021338189.fa/part-00000
/tmp/adamTestMvn1aEve53/TempSuite2759580621021338189.fa/_SUCCESS
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite7331157349813976461.interval_list
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite7331157349813976461.interval_list/.part-00001.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite7331157349813976461.interval_list/.part-00003.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite7331157349813976461.interval_list/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite7331157349813976461.interval_list/part-00003
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite7331157349813976461.interval_list/.part-00000.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite7331157349813976461.interval_list/part-00000
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite7331157349813976461.interval_list/part-00002
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite7331157349813976461.interval_list/_SUCCESS
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite7331157349813976461.interval_list/part-00001
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite7331157349813976461.interval_list/.part-00002.crc
/tmp/adamTestMvn1aEve53/unsorted.sam3853577164128012907.sam
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6567094535448484058.gff3
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6567094535448484058.gff3/.part-00001.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6567094535448484058.gff3/.part-00003.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6567094535448484058.gff3/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6567094535448484058.gff3/part-00003
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6567094535448484058.gff3/.part-00000.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6567094535448484058.gff3/part-00000
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6567094535448484058.gff3/part-00002
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6567094535448484058.gff3/_SUCCESS
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6567094535448484058.gff3/part-00001
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6567094535448484058.gff3/.part-00002.crc
/tmp/adamTestMvn1aEve53/.FeatureDatasetFunctionsSuite8358875628545310369.narrowPeak.crc
/tmp/adamTestMvn1aEve53/random.vcf6959899716503928847.vcf
/tmp/adamTestMvn1aEve53/TempSuite4095213553663720194
/tmp/adamTestMvn1aEve53/TempSuite3172051870832316411
/tmp/adamTestMvn1aEve53/TempSuite648052126848592696
/tmp/adamTestMvn1aEve53/TempSuite7952219019844606804
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite8262764966277498423.bed
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite8262764966277498423.bed/.part-00001.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite8262764966277498423.bed/.part-00003.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite8262764966277498423.bed/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite8262764966277498423.bed/part-00003
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite8262764966277498423.bed/.part-00000.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite8262764966277498423.bed/part-00000
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite8262764966277498423.bed/part-00002
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite8262764966277498423.bed/_SUCCESS
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite8262764966277498423.bed/part-00001
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite8262764966277498423.bed/.part-00002.crc
/tmp/adamTestMvn1aEve53/TempSuite1307740245551720192.adam
/tmp/adamTestMvn1aEve53/TempSuite1307740245551720192.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite1307740245551720192.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite1307740245551720192.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite1307740245551720192.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite1307740245551720192.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite1307740245551720192.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite1307740245551720192.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite1307740245551720192.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite1307740245551720192.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite1307740245551720192.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite4598623694063908389
/tmp/adamTestMvn1aEve53/TempSuite4517956743791775297.adam
/tmp/adamTestMvn1aEve53/TempSuite4517956743791775297.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite4517956743791775297.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite4517956743791775297.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite4517956743791775297.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite4517956743791775297.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite4517956743791775297.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite4517956743791775297.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite4517956743791775297.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite4517956743791775297.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite4517956743791775297.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite4517956743791775297.adam/_header
/tmp/adamTestMvn1aEve53/TempSuite4517956743791775297.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/hg19.chrM.2bit4536578461068190293.chrM.2bit
/tmp/adamTestMvn1aEve53/ReadDatasetSuite8465019912619617945.fastq
/tmp/adamTestMvn1aEve53/TempSuite8229917353417235520.adam
/tmp/adamTestMvn1aEve53/TempSuite8229917353417235520.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite8229917353417235520.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite8229917353417235520.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite8229917353417235520.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite8229917353417235520.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite8229917353417235520.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite8229917353417235520.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite8229917353417235520.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite8229917353417235520.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite8229917353417235520.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite8229917353417235520.adam/_header
/tmp/adamTestMvn1aEve53/TempSuite8229917353417235520.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6728722784342637548
/tmp/adamTestMvn1aEve53/5627734170870999917
/tmp/adamTestMvn1aEve53/5627734170870999917/sorted-variants.vcf
/tmp/adamTestMvn1aEve53/5627734170870999917/.sorted-variants.vcf.crc
/tmp/adamTestMvn1aEve53/TempSuite3047861139679351924
/tmp/adamTestMvn1aEve53/TempSuite2736689753819180507
/tmp/adamTestMvn1aEve53/TempSuite5837046735927954575.adam
/tmp/adamTestMvn1aEve53/TempSuite5837046735927954575.adam/.part-00001-91345606-a4da-426e-947f-31b811481bd7-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite5837046735927954575.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite5837046735927954575.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite5837046735927954575.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite5837046735927954575.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite5837046735927954575.adam/part-00001-91345606-a4da-426e-947f-31b811481bd7-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite5837046735927954575.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite5837046735927954575.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite5837046735927954575.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/TempSuite5837046735927954575.adam/.part-00000-91345606-a4da-426e-947f-31b811481bd7-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite5837046735927954575.adam/part-00000-91345606-a4da-426e-947f-31b811481bd7-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite5837046735927954575.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/TempSuite5837046735927954575.adam/part-00002-91345606-a4da-426e-947f-31b811481bd7-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite5837046735927954575.adam/.part-00002-91345606-a4da-426e-947f-31b811481bd7-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/2299522821365176215
/tmp/adamTestMvn1aEve53/2299522821365176215/unordered.adam
/tmp/adamTestMvn1aEve53/2299522821365176215/unordered.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/2299522821365176215/unordered.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/2299522821365176215/unordered.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/2299522821365176215/unordered.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/2299522821365176215/unordered.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/2299522821365176215/unordered.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/2299522821365176215/unordered.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/2299522821365176215/unordered.adam/_metadata
/tmp/adamTestMvn1aEve53/2299522821365176215/unordered.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/2299522821365176215/unordered.adam/_common_metadata
/tmp/adamTestMvn1aEve53/2299522821365176215/unordered.adam/_references.avro
/tmp/adamTestMvn1aEve53/2299522821365176215/unordered.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/2299522821365176215/unordered.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/2299522821365176215/unordered.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/1357570798191906965
/tmp/adamTestMvn1aEve53/1357570798191906965/.gff3
/tmp/adamTestMvn1aEve53/1357570798191906965/..gff3.crc
/tmp/adamTestMvn1aEve53/TempSuite9120054522285798511
/tmp/adamTestMvn1aEve53/noqual5140303149849216241
/tmp/adamTestMvn1aEve53/noqual5140303149849216241/noqualB.fastq
/tmp/adamTestMvn1aEve53/noqual5140303149849216241/noqualB.fastq/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/noqual5140303149849216241/noqualB.fastq/.part-00000.crc
/tmp/adamTestMvn1aEve53/noqual5140303149849216241/noqualB.fastq/part-00000
/tmp/adamTestMvn1aEve53/noqual5140303149849216241/noqualB.fastq/_SUCCESS
/tmp/adamTestMvn1aEve53/noqual5140303149849216241/noqualA.sam
/tmp/adamTestMvn1aEve53/noqual5140303149849216241/noqualA.sam/part-r-00000.sam
/tmp/adamTestMvn1aEve53/noqual5140303149849216241/noqualA.sam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/noqual5140303149849216241/noqualA.sam/_SUCCESS
/tmp/adamTestMvn1aEve53/noqual5140303149849216241/noqualA.sam/.part-r-00000.sam.crc
/tmp/adamTestMvn1aEve53/3275342258829091798
/tmp/adamTestMvn1aEve53/3275342258829091798/binned.adam
/tmp/adamTestMvn1aEve53/3275342258829091798/binned.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/3275342258829091798/binned.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/3275342258829091798/binned.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/3275342258829091798/binned.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/3275342258829091798/binned.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/3275342258829091798/binned.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/3275342258829091798/binned.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/3275342258829091798/binned.adam/_metadata
/tmp/adamTestMvn1aEve53/3275342258829091798/binned.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/3275342258829091798/binned.adam/_common_metadata
/tmp/adamTestMvn1aEve53/3275342258829091798/binned.adam/_references.avro
/tmp/adamTestMvn1aEve53/3275342258829091798/binned.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/3275342258829091798/binned.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/3275342258829091798/binned.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite1854670060819837099
/tmp/adamTestMvn1aEve53/SliceDatasetSuite8929974872366703965
/tmp/adamTestMvn1aEve53/TempSuite5692130695163616575
/tmp/adamTestMvn1aEve53/TempSuite8244349020070674022
/tmp/adamTestMvn1aEve53/TempSuite357335526382327751
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite4426765172942422339
/tmp/adamTestMvn1aEve53/4494167392680388354
/tmp/adamTestMvn1aEve53/4494167392680388354/.ordered.sam.crc
/tmp/adamTestMvn1aEve53/4494167392680388354/ordered.sam
/tmp/adamTestMvn1aEve53/TempSuite2432798508555795.adam
/tmp/adamTestMvn1aEve53/TempSuite2432798508555795.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite2432798508555795.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite2432798508555795.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite2432798508555795.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite2432798508555795.adam/_samples.avro
/tmp/adamTestMvn1aEve53/TempSuite2432798508555795.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite2432798508555795.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite2432798508555795.adam/.part-00000-d0712c45-e53c-4953-b763-2359bcb9fe21-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite2432798508555795.adam/_header
/tmp/adamTestMvn1aEve53/TempSuite2432798508555795.adam/part-00000-d0712c45-e53c-4953-b763-2359bcb9fe21-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite1959685937591173193
/tmp/adamTestMvn1aEve53/TempSuite5519762446005010883
/tmp/adamTestMvn1aEve53/TempSuite5599072485397295124.adam
/tmp/adamTestMvn1aEve53/TempSuite5599072485397295124.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite5599072485397295124.adam/part-r-00001.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite5599072485397295124.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite5599072485397295124.adam/part-r-00002.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite5599072485397295124.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite5599072485397295124.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite5599072485397295124.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite5599072485397295124.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite5599072485397295124.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite5599072485397295124.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite5599072485397295124.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite5599072485397295124.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite5599072485397295124.adam/_samples.avro
/tmp/adamTestMvn1aEve53/TempSuite5599072485397295124.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite5599072485397295124.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite5599072485397295124.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite5599072485397295124.adam/part-r-00003.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite5599072485397295124.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite7581853726507725652.bed
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite3303855335120315560
/tmp/adamTestMvn1aEve53/TempSuite7264134847979651822.adam
/tmp/adamTestMvn1aEve53/TempSuite7264134847979651822.adam/part-00000-bdbb55d8-344a-40ea-b761-342312d46767-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite7264134847979651822.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite7264134847979651822.adam/.part-00000-bdbb55d8-344a-40ea-b761-342312d46767-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite7264134847979651822.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite7264134847979651822.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite7264134847979651822.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite8268203359618093865.adam
/tmp/adamTestMvn1aEve53/TempSuite8268203359618093865.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite8268203359618093865.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite8268203359618093865.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite8268203359618093865.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite8268203359618093865.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite8268203359618093865.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite8268203359618093865.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite8268203359618093865.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite8268203359618093865.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite8268203359618093865.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite8268203359618093865.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite8268203359618093865.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/TempSuite8268203359618093865.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/TempSuite8268203359618093865.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/.FeatureDatasetFunctionsSuite7731547801930631185.gtf.crc
/tmp/adamTestMvn1aEve53/trinity.fa2320452406129013990.fa
/tmp/adamTestMvn1aEve53/TempSuite2684707761092189059.adam
/tmp/adamTestMvn1aEve53/TempSuite2684707761092189059.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite2684707761092189059.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite2684707761092189059.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite2684707761092189059.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite2684707761092189059.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite2684707761092189059.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite2684707761092189059.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite2684707761092189059.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite2684707761092189059.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite2684707761092189059.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite2684707761092189059.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite2684707761092189059.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/TempSuite2684707761092189059.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/TempSuite2684707761092189059.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite5468846048777603860
/tmp/adamTestMvn1aEve53/TempSuite107551306598042730
/tmp/adamTestMvn1aEve53/TempSuite1686598164378045527
/tmp/adamTestMvn1aEve53/TempSuite322173460152809427.adam
/tmp/adamTestMvn1aEve53/TempSuite322173460152809427.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite322173460152809427.adam/part-r-00001.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite322173460152809427.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite322173460152809427.adam/part-r-00002.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite322173460152809427.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite322173460152809427.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite322173460152809427.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite322173460152809427.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite322173460152809427.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite322173460152809427.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite322173460152809427.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite322173460152809427.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite322173460152809427.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite322173460152809427.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite322173460152809427.adam/part-r-00003.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite322173460152809427.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/javaAC7884806951086859790
/tmp/adamTestMvn1aEve53/javaAC7884806951086859790/testRdd.read.adam
/tmp/adamTestMvn1aEve53/javaAC7884806951086859790/testRdd.read.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/javaAC7884806951086859790/testRdd.read.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/javaAC7884806951086859790/testRdd.read.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/javaAC7884806951086859790/testRdd.read.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/javaAC7884806951086859790/testRdd.read.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/javaAC7884806951086859790/testRdd.read.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/javaAC7884806951086859790/testRdd.read.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/javaAC7884806951086859790/testRdd.read.adam/_metadata
/tmp/adamTestMvn1aEve53/javaAC7884806951086859790/testRdd.read.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/javaAC7884806951086859790/testRdd.read.adam/_common_metadata
/tmp/adamTestMvn1aEve53/javaAC7884806951086859790/testRdd.read.adam/_references.avro
/tmp/adamTestMvn1aEve53/javaAC7884806951086859790/testRdd.read.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/javaAC7884806951086859790/testRdd.read.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/javaAC7884806951086859790/testRdd.read.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite6311203010868743925reads12.sam
/tmp/adamTestMvn1aEve53/TempSuite8859761923626965813.adam
/tmp/adamTestMvn1aEve53/TempSuite8859761923626965813.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite8859761923626965813.adam/part-r-00001.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite8859761923626965813.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite8859761923626965813.adam/part-r-00002.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite8859761923626965813.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite8859761923626965813.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite8859761923626965813.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite8859761923626965813.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite8859761923626965813.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite8859761923626965813.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite8859761923626965813.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite8859761923626965813.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite8859761923626965813.adam/_samples.avro
/tmp/adamTestMvn1aEve53/TempSuite8859761923626965813.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite8859761923626965813.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite8859761923626965813.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite8859761923626965813.adam/part-r-00003.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite8859761923626965813.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite7249179679871504374.adam
/tmp/adamTestMvn1aEve53/TempSuite7249179679871504374.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite7249179679871504374.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite7249179679871504374.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite7249179679871504374.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite7249179679871504374.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite7249179679871504374.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite7249179679871504374.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite7249179679871504374.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite7249179679871504374.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite7249179679871504374.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite7249179679871504374.adam/_header
/tmp/adamTestMvn1aEve53/TempSuite7249179679871504374.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite1940549446413526741
/tmp/adamTestMvn1aEve53/TempSuite324448035657394953.adam
/tmp/adamTestMvn1aEve53/TempSuite324448035657394953.adam/.part-00002-86f29872-3618-414e-93bb-669344f916c6-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite324448035657394953.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite324448035657394953.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite324448035657394953.adam/.part-00000-86f29872-3618-414e-93bb-669344f916c6-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite324448035657394953.adam/part-00000-86f29872-3618-414e-93bb-669344f916c6-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite324448035657394953.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite324448035657394953.adam/part-00001-86f29872-3618-414e-93bb-669344f916c6-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite324448035657394953.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite324448035657394953.adam/.part-00001-86f29872-3618-414e-93bb-669344f916c6-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite324448035657394953.adam/part-00002-86f29872-3618-414e-93bb-669344f916c6-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/3468365183085992862
/tmp/adamTestMvn1aEve53/3468365183085992862/.small.vcf.bgz.crc
/tmp/adamTestMvn1aEve53/3468365183085992862/small.vcf.bgz
/tmp/adamTestMvn1aEve53/TempSuite5963310385937299006.adam
/tmp/adamTestMvn1aEve53/TempSuite5963310385937299006.adam/part-00000-d2036d9d-fe51-4206-a185-4efa35a37273-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite5963310385937299006.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite5963310385937299006.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite5963310385937299006.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite5963310385937299006.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite5963310385937299006.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite5963310385937299006.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite5963310385937299006.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/TempSuite5963310385937299006.adam/.part-00000-d2036d9d-fe51-4206-a185-4efa35a37273-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite5963310385937299006.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/TempSuite3535995421339380512.adam
/tmp/adamTestMvn1aEve53/TempSuite3535995421339380512.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite3535995421339380512.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite3535995421339380512.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite3535995421339380512.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite3535995421339380512.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite3535995421339380512.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite3535995421339380512.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite3535995421339380512.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite3535995421339380512.adam/_samples.avro
/tmp/adamTestMvn1aEve53/TempSuite3535995421339380512.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite3535995421339380512.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite3535995421339380512.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite3535995421339380512.adam/_header
/tmp/adamTestMvn1aEve53/TempSuite3535995421339380512.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite8973757927970054740.fasta
/tmp/adamTestMvn1aEve53/TempSuite2749519311495914822.bed
/tmp/adamTestMvn1aEve53/TempSuite2749519311495914822.bed/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite2749519311495914822.bed/.part-00000.crc
/tmp/adamTestMvn1aEve53/TempSuite2749519311495914822.bed/part-00000
/tmp/adamTestMvn1aEve53/TempSuite2749519311495914822.bed/_SUCCESS
/tmp/adamTestMvn1aEve53/6410101635556010548
/tmp/adamTestMvn1aEve53/6410101635556010548/.readname_sorted.sam.crc
/tmp/adamTestMvn1aEve53/6410101635556010548/readname_sorted.sam
/tmp/adamTestMvn1aEve53/TempSuite6524451882231327957
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2159960565395098606.gtf
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2159960565395098606.gtf/.part-00001.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2159960565395098606.gtf/.part-00003.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2159960565395098606.gtf/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2159960565395098606.gtf/part-00003
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2159960565395098606.gtf/.part-00000.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2159960565395098606.gtf/part-00000
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2159960565395098606.gtf/part-00002
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2159960565395098606.gtf/_SUCCESS
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2159960565395098606.gtf/part-00001
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2159960565395098606.gtf/.part-00002.crc
/tmp/adamTestMvn1aEve53/6695061499122562617
/tmp/adamTestMvn1aEve53/6695061499122562617/binned.adam
/tmp/adamTestMvn1aEve53/6695061499122562617/binned.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/6695061499122562617/binned.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/6695061499122562617/binned.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/6695061499122562617/binned.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/6695061499122562617/binned.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/6695061499122562617/binned.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/6695061499122562617/binned.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/6695061499122562617/binned.adam/_metadata
/tmp/adamTestMvn1aEve53/6695061499122562617/binned.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/6695061499122562617/binned.adam/_common_metadata
/tmp/adamTestMvn1aEve53/6695061499122562617/binned.adam/_references.avro
/tmp/adamTestMvn1aEve53/6695061499122562617/binned.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/6695061499122562617/binned.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/6695061499122562617/binned.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite1434119705462161672
/tmp/adamTestMvn1aEve53/.FeatureDatasetFunctionsSuite8911151029430356901.gff3.crc
/tmp/adamTestMvn1aEve53/TempSuite624579404053099785.adam
/tmp/adamTestMvn1aEve53/TempSuite624579404053099785.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite624579404053099785.adam/.part-00000-6112c541-57ed-422c-8833-fdd45545d816-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite624579404053099785.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite624579404053099785.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite624579404053099785.adam/part-00000-6112c541-57ed-422c-8833-fdd45545d816-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite624579404053099785.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite624579404053099785.adam/_samples.avro
/tmp/adamTestMvn1aEve53/TempSuite624579404053099785.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite624579404053099785.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite624579404053099785.adam/_header
/tmp/adamTestMvn1aEve53/TempSuite1020495820937433970.sam
/tmp/adamTestMvn1aEve53/TempSuite1020495820937433970.sam/part-r-00000.sam
/tmp/adamTestMvn1aEve53/TempSuite1020495820937433970.sam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite1020495820937433970.sam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite1020495820937433970.sam/.part-r-00000.sam.crc
/tmp/adamTestMvn1aEve53/TempSuite2597133733430168522.adam
/tmp/adamTestMvn1aEve53/TempSuite2597133733430168522.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite2597133733430168522.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite2597133733430168522.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite2597133733430168522.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite2597133733430168522.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite2597133733430168522.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite2597133733430168522.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite2597133733430168522.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite2597133733430168522.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite2597133733430168522.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite2597133733430168522.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite2597133733430168522.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/TempSuite2597133733430168522.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/TempSuite2597133733430168522.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite7582122391933728981
/tmp/adamTestMvn1aEve53/TempSuite4959063524612983634.adam
/tmp/adamTestMvn1aEve53/TempSuite4959063524612983634.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite4959063524612983634.adam/part-r-00001.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite4959063524612983634.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite4959063524612983634.adam/part-r-00002.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite4959063524612983634.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite4959063524612983634.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite4959063524612983634.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite4959063524612983634.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite4959063524612983634.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite4959063524612983634.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite4959063524612983634.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite4959063524612983634.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite4959063524612983634.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite4959063524612983634.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite4959063524612983634.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite4959063524612983634.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite4959063524612983634.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/TempSuite4959063524612983634.adam/part-r-00003.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite4959063524612983634.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/TempSuite4959063524612983634.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite1307740245551720192
/tmp/adamTestMvn1aEve53/SliceDatasetSuite1430142994745319952
/tmp/adamTestMvn1aEve53/TempSuite6404951749264731082.adam
/tmp/adamTestMvn1aEve53/TempSuite6404951749264731082.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite6404951749264731082.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite6404951749264731082.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite6404951749264731082.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite6404951749264731082.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite6404951749264731082.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite6404951749264731082.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite6404951749264731082.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite6404951749264731082.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite6404951749264731082.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite6404951749264731082.adam/_header
/tmp/adamTestMvn1aEve53/TempSuite6404951749264731082.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite3780876533488127664
/tmp/adamTestMvn1aEve53/TempSuite1201147129368226839
/tmp/adamTestMvn1aEve53/ordered.sam2794058523391660327.sam
/tmp/adamTestMvn1aEve53/TempSuite7778406626538131822
/tmp/adamTestMvn1aEve53/1596759437026-0
/tmp/adamTestMvn1aEve53/1596759437026-0/.test.gvcf.vcf.crc
/tmp/adamTestMvn1aEve53/1596759437026-0/test.gvcf.vcf
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite7597416609166390310
/tmp/adamTestMvn1aEve53/3240021460318975150
/tmp/adamTestMvn1aEve53/3240021460318975150/out.cram_head
/tmp/adamTestMvn1aEve53/3240021460318975150/out.cram_tail
/tmp/adamTestMvn1aEve53/3240021460318975150/out.cram_tail/.part-r-00001.cram.crc
/tmp/adamTestMvn1aEve53/3240021460318975150/out.cram_tail/.part-r-00003.cram.crc
/tmp/adamTestMvn1aEve53/3240021460318975150/out.cram_tail/part-r-00000.cram
/tmp/adamTestMvn1aEve53/3240021460318975150/out.cram_tail/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/3240021460318975150/out.cram_tail/.part-r-00002.cram.crc
/tmp/adamTestMvn1aEve53/3240021460318975150/out.cram_tail/part-r-00002.cram
/tmp/adamTestMvn1aEve53/3240021460318975150/out.cram_tail/_SUCCESS
/tmp/adamTestMvn1aEve53/3240021460318975150/out.cram_tail/.part-r-00000.cram.crc
/tmp/adamTestMvn1aEve53/3240021460318975150/out.cram_tail/part-r-00001.cram
/tmp/adamTestMvn1aEve53/3240021460318975150/out.cram_tail/part-r-00003.cram
/tmp/adamTestMvn1aEve53/3240021460318975150/.out.cram.crc
/tmp/adamTestMvn1aEve53/3240021460318975150/out.cram
/tmp/adamTestMvn1aEve53/3240021460318975150/.out.cram_head.crc
/tmp/adamTestMvn1aEve53/TempSuite565598505097850196.bed
/tmp/adamTestMvn1aEve53/TempSuite565598505097850196.bed/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite565598505097850196.bed/.part-00000.crc
/tmp/adamTestMvn1aEve53/TempSuite565598505097850196.bed/part-00000
/tmp/adamTestMvn1aEve53/TempSuite565598505097850196.bed/_SUCCESS
/tmp/adamTestMvn1aEve53/reads123653966191341563678
/tmp/adamTestMvn1aEve53/reads123653966191341563678/reads12.sam
/tmp/adamTestMvn1aEve53/reads123653966191341563678/reads12.sam/part-r-00000.sam
/tmp/adamTestMvn1aEve53/reads123653966191341563678/reads12.sam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/reads123653966191341563678/reads12.sam/_SUCCESS
/tmp/adamTestMvn1aEve53/reads123653966191341563678/reads12.sam/.part-r-00000.sam.crc
/tmp/adamTestMvn1aEve53/TempSuite4434465770696769474.adam
/tmp/adamTestMvn1aEve53/TempSuite4434465770696769474.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite4434465770696769474.adam/part-00000-d4c42b07-0c06-47e8-a347-0541ab18154f-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite4434465770696769474.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite4434465770696769474.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite4434465770696769474.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite4434465770696769474.adam/.part-00000-d4c42b07-0c06-47e8-a347-0541ab18154f-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite4434465770696769474.adam/_samples.avro
/tmp/adamTestMvn1aEve53/TempSuite4434465770696769474.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite4434465770696769474.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite4434465770696769474.adam/_header
/tmp/adamTestMvn1aEve53/TempSuite4396280053393456147
/tmp/adamTestMvn1aEve53/TempSuite4598623694063908389.bed
/tmp/adamTestMvn1aEve53/TempSuite4598623694063908389.bed/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite4598623694063908389.bed/.part-00000.crc
/tmp/adamTestMvn1aEve53/TempSuite4598623694063908389.bed/part-00000
/tmp/adamTestMvn1aEve53/TempSuite4598623694063908389.bed/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite107551306598042730.adam
/tmp/adamTestMvn1aEve53/TempSuite107551306598042730.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite107551306598042730.adam/._partitionedByStartPos.crc
/tmp/adamTestMvn1aEve53/TempSuite107551306598042730.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite107551306598042730.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite107551306598042730.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite107551306598042730.adam/_samples.avro
/tmp/adamTestMvn1aEve53/TempSuite107551306598042730.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite107551306598042730.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite107551306598042730.adam/referenceName=1
/tmp/adamTestMvn1aEve53/TempSuite107551306598042730.adam/referenceName=1/positionBin=0
/tmp/adamTestMvn1aEve53/TempSuite107551306598042730.adam/referenceName=1/positionBin=0/part-00000-11cc4351-8c3e-453c-a790-7b4ac7078619.c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite107551306598042730.adam/referenceName=1/positionBin=0/.part-00000-11cc4351-8c3e-453c-a790-7b4ac7078619.c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite107551306598042730.adam/_header
/tmp/adamTestMvn1aEve53/TempSuite107551306598042730.adam/_partitionedByStartPos
/tmp/adamTestMvn1aEve53/TempSuite906143045530263733
/tmp/adamTestMvn1aEve53/1669822491947293234
/tmp/adamTestMvn1aEve53/1669822491947293234/variants.adam
/tmp/adamTestMvn1aEve53/1669822491947293234/variants.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/1669822491947293234/variants.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/1669822491947293234/variants.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/1669822491947293234/variants.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/1669822491947293234/variants.adam/._header.crc
/tmp/adamTestMvn1aEve53/1669822491947293234/variants.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/1669822491947293234/variants.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/1669822491947293234/variants.adam/_metadata
/tmp/adamTestMvn1aEve53/1669822491947293234/variants.adam/_common_metadata
/tmp/adamTestMvn1aEve53/1669822491947293234/variants.adam/_references.avro
/tmp/adamTestMvn1aEve53/1669822491947293234/variants.adam/_header
/tmp/adamTestMvn1aEve53/1669822491947293234/variants.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite431863092659376217.adam
/tmp/adamTestMvn1aEve53/TempSuite431863092659376217.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite431863092659376217.adam/part-r-00001.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite431863092659376217.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite431863092659376217.adam/part-r-00002.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite431863092659376217.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite431863092659376217.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite431863092659376217.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite431863092659376217.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite431863092659376217.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite431863092659376217.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite431863092659376217.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite431863092659376217.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite431863092659376217.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite431863092659376217.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite431863092659376217.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite431863092659376217.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite431863092659376217.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/TempSuite431863092659376217.adam/part-r-00003.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite431863092659376217.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/TempSuite431863092659376217.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite830208059193706612
/tmp/adamTestMvn1aEve53/TempSuite654130617410634606.adam
/tmp/adamTestMvn1aEve53/TempSuite654130617410634606.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite654130617410634606.adam/part-r-00001.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite654130617410634606.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite654130617410634606.adam/part-r-00002.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite654130617410634606.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite654130617410634606.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite654130617410634606.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite654130617410634606.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite654130617410634606.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite654130617410634606.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite654130617410634606.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite654130617410634606.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite654130617410634606.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite654130617410634606.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite654130617410634606.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite654130617410634606.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite654130617410634606.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/TempSuite654130617410634606.adam/part-r-00003.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite654130617410634606.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/TempSuite654130617410634606.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite7641710820339056317_1.fq
/tmp/adamTestMvn1aEve53/TempSuite7641710820339056317_1.fq/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite7641710820339056317_1.fq/.part-00000.crc
/tmp/adamTestMvn1aEve53/TempSuite7641710820339056317_1.fq/part-00000
/tmp/adamTestMvn1aEve53/TempSuite7641710820339056317_1.fq/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite344104911855657173
/tmp/adamTestMvn1aEve53/TempSuite5599072485397295124
/tmp/adamTestMvn1aEve53/TempSuite690410249845907490
/tmp/adamTestMvn1aEve53/TempSuite4659007929305251573
/tmp/adamTestMvn1aEve53/TempSuite7414782684860366343.bed
/tmp/adamTestMvn1aEve53/TempSuite7414782684860366343.bed/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite7414782684860366343.bed/.part-00000.crc
/tmp/adamTestMvn1aEve53/TempSuite7414782684860366343.bed/part-00000
/tmp/adamTestMvn1aEve53/TempSuite7414782684860366343.bed/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite796488203368244217.sam
/tmp/adamTestMvn1aEve53/TempSuite796488203368244217.sam/part-r-00000.sam
/tmp/adamTestMvn1aEve53/TempSuite796488203368244217.sam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite796488203368244217.sam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite796488203368244217.sam/.part-r-00000.sam.crc
/tmp/adamTestMvn1aEve53/TempSuite5755006624347314646
/tmp/adamTestMvn1aEve53/TempSuite4616141822270547424.adam
/tmp/adamTestMvn1aEve53/TempSuite4616141822270547424.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite4616141822270547424.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite4616141822270547424.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite4616141822270547424.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite4616141822270547424.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite4616141822270547424.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite4616141822270547424.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite4616141822270547424.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite4616141822270547424.adam/_samples.avro
/tmp/adamTestMvn1aEve53/TempSuite4616141822270547424.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite4616141822270547424.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite4616141822270547424.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite4616141822270547424.adam/_header
/tmp/adamTestMvn1aEve53/TempSuite4616141822270547424.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/.TempSuite7874417701278811114.fq.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite7731547801930631185
/tmp/adamTestMvn1aEve53/TempSuite6746183850544526070_1.fq
/tmp/adamTestMvn1aEve53/TempSuite6746183850544526070_1.fq/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite6746183850544526070_1.fq/.part-00000.crc
/tmp/adamTestMvn1aEve53/TempSuite6746183850544526070_1.fq/part-00000
/tmp/adamTestMvn1aEve53/TempSuite6746183850544526070_1.fq/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite5755006624347314646.adam
/tmp/adamTestMvn1aEve53/TempSuite5755006624347314646.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite5755006624347314646.adam/part-r-00001.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite5755006624347314646.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite5755006624347314646.adam/part-r-00002.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite5755006624347314646.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite5755006624347314646.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite5755006624347314646.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite5755006624347314646.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite5755006624347314646.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite5755006624347314646.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite5755006624347314646.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite5755006624347314646.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite5755006624347314646.adam/_samples.avro
/tmp/adamTestMvn1aEve53/TempSuite5755006624347314646.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite5755006624347314646.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite5755006624347314646.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite5755006624347314646.adam/part-r-00003.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite5755006624347314646.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite7187296832035038305
/tmp/adamTestMvn1aEve53/2013600404124253309
/tmp/adamTestMvn1aEve53/2013600404124253309/out.cram_head
/tmp/adamTestMvn1aEve53/2013600404124253309/out.cram_tail
/tmp/adamTestMvn1aEve53/2013600404124253309/out.cram_tail/.part-r-00001.cram.crc
/tmp/adamTestMvn1aEve53/2013600404124253309/out.cram_tail/.part-r-00003.cram.crc
/tmp/adamTestMvn1aEve53/2013600404124253309/out.cram_tail/part-r-00000.cram
/tmp/adamTestMvn1aEve53/2013600404124253309/out.cram_tail/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/2013600404124253309/out.cram_tail/.part-r-00002.cram.crc
/tmp/adamTestMvn1aEve53/2013600404124253309/out.cram_tail/part-r-00002.cram
/tmp/adamTestMvn1aEve53/2013600404124253309/out.cram_tail/_SUCCESS
/tmp/adamTestMvn1aEve53/2013600404124253309/out.cram_tail/.part-r-00000.cram.crc
/tmp/adamTestMvn1aEve53/2013600404124253309/out.cram_tail/part-r-00001.cram
/tmp/adamTestMvn1aEve53/2013600404124253309/out.cram_tail/part-r-00003.cram
/tmp/adamTestMvn1aEve53/2013600404124253309/.out.cram.crc
/tmp/adamTestMvn1aEve53/2013600404124253309/out.cram
/tmp/adamTestMvn1aEve53/2013600404124253309/.out.cram_head.crc
/tmp/adamTestMvn1aEve53/489328737348207257
/tmp/adamTestMvn1aEve53/489328737348207257/out.sam_head
/tmp/adamTestMvn1aEve53/489328737348207257/.out.sam_head.crc
/tmp/adamTestMvn1aEve53/489328737348207257/out.sam_tail
/tmp/adamTestMvn1aEve53/489328737348207257/out.sam_tail/part-r-00002.sam
/tmp/adamTestMvn1aEve53/489328737348207257/out.sam_tail/part-r-00000.sam
/tmp/adamTestMvn1aEve53/489328737348207257/out.sam_tail/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/489328737348207257/out.sam_tail/_SUCCESS
/tmp/adamTestMvn1aEve53/489328737348207257/out.sam_tail/.part-r-00000.sam.crc
/tmp/adamTestMvn1aEve53/489328737348207257/out.sam_tail/part-r-00003.sam
/tmp/adamTestMvn1aEve53/489328737348207257/out.sam_tail/.part-r-00002.sam.crc
/tmp/adamTestMvn1aEve53/489328737348207257/out.sam_tail/.part-r-00001.sam.crc
/tmp/adamTestMvn1aEve53/489328737348207257/out.sam_tail/part-r-00001.sam
/tmp/adamTestMvn1aEve53/489328737348207257/out.sam_tail/.part-r-00003.sam.crc
/tmp/adamTestMvn1aEve53/489328737348207257/.out.sam.crc
/tmp/adamTestMvn1aEve53/489328737348207257/out.sam
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite7836445841974959216
/tmp/adamTestMvn1aEve53/unordered.sam5427916953040804125.sam
/tmp/adamTestMvn1aEve53/1596758858858-0
/tmp/adamTestMvn1aEve53/1596758858858-0/test_single.vcf
/tmp/adamTestMvn1aEve53/1596758858858-0/test.vcf
/tmp/adamTestMvn1aEve53/1596758858858-0/test.vcf/.part-r-00000.crc
/tmp/adamTestMvn1aEve53/1596758858858-0/test.vcf/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/1596758858858-0/test.vcf/_SUCCESS
/tmp/adamTestMvn1aEve53/1596758858858-0/test.vcf/part-r-00000
/tmp/adamTestMvn1aEve53/1596758858858-0/.test_single.vcf.crc
/tmp/adamTestMvn1aEve53/SliceDatasetSuite5033363039490720434.adam
/tmp/adamTestMvn1aEve53/SliceDatasetSuite5033363039490720434.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvn1aEve53/SliceDatasetSuite5033363039490720434.adam/part-r-00001.gz.parquet
/tmp/adamTestMvn1aEve53/SliceDatasetSuite5033363039490720434.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/SliceDatasetSuite5033363039490720434.adam/part-r-00002.gz.parquet
/tmp/adamTestMvn1aEve53/SliceDatasetSuite5033363039490720434.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/SliceDatasetSuite5033363039490720434.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/SliceDatasetSuite5033363039490720434.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/SliceDatasetSuite5033363039490720434.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/SliceDatasetSuite5033363039490720434.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/SliceDatasetSuite5033363039490720434.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvn1aEve53/SliceDatasetSuite5033363039490720434.adam/_metadata
/tmp/adamTestMvn1aEve53/SliceDatasetSuite5033363039490720434.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvn1aEve53/SliceDatasetSuite5033363039490720434.adam/_common_metadata
/tmp/adamTestMvn1aEve53/SliceDatasetSuite5033363039490720434.adam/_references.avro
/tmp/adamTestMvn1aEve53/SliceDatasetSuite5033363039490720434.adam/part-r-00003.gz.parquet
/tmp/adamTestMvn1aEve53/SliceDatasetSuite5033363039490720434.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite5447418965871376630
/tmp/adamTestMvn1aEve53/TempSuite3209661606899121005
/tmp/adamTestMvn1aEve53/TempSuite7987149786910030415.bed
/tmp/adamTestMvn1aEve53/TempSuite7987149786910030415.bed/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite7987149786910030415.bed/.part-00000.crc
/tmp/adamTestMvn1aEve53/TempSuite7987149786910030415.bed/part-00000
/tmp/adamTestMvn1aEve53/TempSuite7987149786910030415.bed/_SUCCESS
/tmp/adamTestMvn1aEve53/SliceDatasetSuite8929974872366703965.fasta
/tmp/adamTestMvn1aEve53/.FeatureDatasetFunctionsSuite4774434098005748306.bed.crc
/tmp/adamTestMvn1aEve53/TempSuite7630682249429408962.bed
/tmp/adamTestMvn1aEve53/TempSuite7630682249429408962.bed/.part-00001.crc
/tmp/adamTestMvn1aEve53/TempSuite7630682249429408962.bed/.part-00003.crc
/tmp/adamTestMvn1aEve53/TempSuite7630682249429408962.bed/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite7630682249429408962.bed/part-00003
/tmp/adamTestMvn1aEve53/TempSuite7630682249429408962.bed/.part-00000.crc
/tmp/adamTestMvn1aEve53/TempSuite7630682249429408962.bed/part-00000
/tmp/adamTestMvn1aEve53/TempSuite7630682249429408962.bed/part-00002
/tmp/adamTestMvn1aEve53/TempSuite7630682249429408962.bed/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite7630682249429408962.bed/part-00001
/tmp/adamTestMvn1aEve53/TempSuite7630682249429408962.bed/.part-00002.crc
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite6659034825290332447
/tmp/adamTestMvn1aEve53/.FeatureDatasetFunctionsSuite7581853726507725652.bed.crc
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite5965278415618236036
/tmp/adamTestMvn1aEve53/TempSuite6865475164239076323.adam
/tmp/adamTestMvn1aEve53/TempSuite6865475164239076323.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite6865475164239076323.adam/part-r-00001.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite6865475164239076323.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite6865475164239076323.adam/part-r-00002.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite6865475164239076323.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite6865475164239076323.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite6865475164239076323.adam/_partitionMap.avro
/tmp/adamTestMvn1aEve53/TempSuite6865475164239076323.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite6865475164239076323.adam/._partitionMap.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite6865475164239076323.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite6865475164239076323.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite6865475164239076323.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite6865475164239076323.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite6865475164239076323.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite6865475164239076323.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite6865475164239076323.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite6865475164239076323.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite6865475164239076323.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite6865475164239076323.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/TempSuite6865475164239076323.adam/part-r-00003.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite6865475164239076323.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/TempSuite6865475164239076323.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/javaAC7870951628169696312
/tmp/adamTestMvn1aEve53/javaAC7870951628169696312/testRdd.slices.adam
/tmp/adamTestMvn1aEve53/javaAC7870951628169696312/testRdd.slices.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/javaAC7870951628169696312/testRdd.slices.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/javaAC7870951628169696312/testRdd.slices.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/javaAC7870951628169696312/testRdd.slices.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/javaAC7870951628169696312/testRdd.slices.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/javaAC7870951628169696312/testRdd.slices.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/javaAC7870951628169696312/testRdd.slices.adam/_metadata
/tmp/adamTestMvn1aEve53/javaAC7870951628169696312/testRdd.slices.adam/_common_metadata
/tmp/adamTestMvn1aEve53/javaAC7870951628169696312/testRdd.slices.adam/_references.avro
/tmp/adamTestMvn1aEve53/javaAC7870951628169696312/testRdd.slices.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/small.vcf6227736598498074272.vcf
/tmp/adamTestMvn1aEve53/TempSuite2032842050746472488
/tmp/adamTestMvn1aEve53/4901837622401537117
/tmp/adamTestMvn1aEve53/4901837622401537117/binned.adam
/tmp/adamTestMvn1aEve53/4901837622401537117/binned.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/4901837622401537117/binned.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/4901837622401537117/binned.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/4901837622401537117/binned.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/4901837622401537117/binned.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/4901837622401537117/binned.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/4901837622401537117/binned.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/4901837622401537117/binned.adam/_metadata
/tmp/adamTestMvn1aEve53/4901837622401537117/binned.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/4901837622401537117/binned.adam/_common_metadata
/tmp/adamTestMvn1aEve53/4901837622401537117/binned.adam/_references.avro
/tmp/adamTestMvn1aEve53/4901837622401537117/binned.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/4901837622401537117/binned.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/4901837622401537117/binned.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2318698388480162543
/tmp/adamTestMvn1aEve53/TempSuite4537829669394939889.fa
/tmp/adamTestMvn1aEve53/TempSuite4537829669394939889.fa/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite4537829669394939889.fa/.part-00000.crc
/tmp/adamTestMvn1aEve53/TempSuite4537829669394939889.fa/part-00000
/tmp/adamTestMvn1aEve53/TempSuite4537829669394939889.fa/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite5974260477191809973
/tmp/adamTestMvn1aEve53/3905126848160468137
/tmp/adamTestMvn1aEve53/3905126848160468137/sorted-variants.vcf
/tmp/adamTestMvn1aEve53/3905126848160468137/.sorted-variants.vcf.crc
/tmp/adamTestMvn1aEve53/TempSuite1005463921103329971
/tmp/adamTestMvn1aEve53/TempSuite6028597637225071552.bed
/tmp/adamTestMvn1aEve53/TempSuite6028597637225071552.bed/.part-00001.crc
/tmp/adamTestMvn1aEve53/TempSuite6028597637225071552.bed/.part-00003.crc
/tmp/adamTestMvn1aEve53/TempSuite6028597637225071552.bed/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite6028597637225071552.bed/part-00003
/tmp/adamTestMvn1aEve53/TempSuite6028597637225071552.bed/.part-00000.crc
/tmp/adamTestMvn1aEve53/TempSuite6028597637225071552.bed/part-00000
/tmp/adamTestMvn1aEve53/TempSuite6028597637225071552.bed/part-00002
/tmp/adamTestMvn1aEve53/TempSuite6028597637225071552.bed/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite6028597637225071552.bed/part-00001
/tmp/adamTestMvn1aEve53/TempSuite6028597637225071552.bed/.part-00002.crc
/tmp/adamTestMvn1aEve53/TempSuite1201147129368226839.bed
/tmp/adamTestMvn1aEve53/TempSuite1201147129368226839.bed/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite1201147129368226839.bed/.part-00000.crc
/tmp/adamTestMvn1aEve53/TempSuite1201147129368226839.bed/part-00000
/tmp/adamTestMvn1aEve53/TempSuite1201147129368226839.bed/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite6404951749264731082
/tmp/adamTestMvn1aEve53/TempSuite5109225282494132708.sam
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6567094535448484058
/tmp/adamTestMvn1aEve53/TempSuite4603593439587113360.bed
/tmp/adamTestMvn1aEve53/TempSuite4603593439587113360.bed/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite4603593439587113360.bed/.part-00000.crc
/tmp/adamTestMvn1aEve53/TempSuite4603593439587113360.bed/part-00000
/tmp/adamTestMvn1aEve53/TempSuite4603593439587113360.bed/_SUCCESS
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite7731547801930631185.gtf
/tmp/adamTestMvn1aEve53/TempSuite5885599526499452656.adam
/tmp/adamTestMvn1aEve53/TempSuite5885599526499452656.adam/.part-00000-39591049-346f-47e2-8698-db7dabe3b783-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite5885599526499452656.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite5885599526499452656.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite5885599526499452656.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite5885599526499452656.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite5885599526499452656.adam/_samples.avro
/tmp/adamTestMvn1aEve53/TempSuite5885599526499452656.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite5885599526499452656.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite5885599526499452656.adam/_header
/tmp/adamTestMvn1aEve53/TempSuite5885599526499452656.adam/part-00000-39591049-346f-47e2-8698-db7dabe3b783-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite8973757927970054740
/tmp/adamTestMvn1aEve53/TempSuite4659007929305251573.sam
/tmp/adamTestMvn1aEve53/TempSuite4659007929305251573.sam/part-r-00000.sam
/tmp/adamTestMvn1aEve53/TempSuite4659007929305251573.sam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite4659007929305251573.sam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite4659007929305251573.sam/.part-r-00000.sam.crc
/tmp/adamTestMvn1aEve53/TempSuite8664438933694805564_1.fq
/tmp/adamTestMvn1aEve53/TempSuite6075836379620828061.adam
/tmp/adamTestMvn1aEve53/TempSuite6075836379620828061.adam/.part-00001-6e830030-2986-48ba-b934-526e94a355bd-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite6075836379620828061.adam/part-00000-6e830030-2986-48ba-b934-526e94a355bd-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite6075836379620828061.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite6075836379620828061.adam/.part-00000-6e830030-2986-48ba-b934-526e94a355bd-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite6075836379620828061.adam/part-00001-6e830030-2986-48ba-b934-526e94a355bd-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite6075836379620828061.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite6075836379620828061.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite6075836379620828061.adam/part-00002-6e830030-2986-48ba-b934-526e94a355bd-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite6075836379620828061.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite6075836379620828061.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite6075836379620828061.adam/.part-00002-6e830030-2986-48ba-b934-526e94a355bd-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite6075836379620828061.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite6075836379620828061.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/TempSuite6075836379620828061.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/TempSuite5547794471665063014
/tmp/adamTestMvn1aEve53/TempSuite92428769129157794.adam
/tmp/adamTestMvn1aEve53/TempSuite92428769129157794.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite92428769129157794.adam/part-r-00001.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite92428769129157794.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite92428769129157794.adam/part-r-00004.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite92428769129157794.adam/part-r-00002.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite92428769129157794.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite92428769129157794.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite92428769129157794.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite92428769129157794.adam/.part-r-00004.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite92428769129157794.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite92428769129157794.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite92428769129157794.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite92428769129157794.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite92428769129157794.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite92428769129157794.adam/_samples.avro
/tmp/adamTestMvn1aEve53/TempSuite92428769129157794.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite92428769129157794.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite92428769129157794.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite92428769129157794.adam/part-r-00003.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite92428769129157794.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite3249307188802361368.adam
/tmp/adamTestMvn1aEve53/TempSuite3249307188802361368.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite3249307188802361368.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite3249307188802361368.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite3249307188802361368.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite3249307188802361368.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite3249307188802361368.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite3249307188802361368.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite3249307188802361368.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite3249307188802361368.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite3249307188802361368.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite3249307188802361368.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite3249307188802361368.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/TempSuite3249307188802361368.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/TempSuite3249307188802361368.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/unordered.sam6760111699809789753.sam
/tmp/adamTestMvn1aEve53/TempSuite1457957921031870497.adam
/tmp/adamTestMvn1aEve53/TempSuite1457957921031870497.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite1457957921031870497.adam/part-r-00001.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite1457957921031870497.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite1457957921031870497.adam/part-r-00002.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite1457957921031870497.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite1457957921031870497.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite1457957921031870497.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite1457957921031870497.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite1457957921031870497.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite1457957921031870497.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite1457957921031870497.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite1457957921031870497.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite1457957921031870497.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite1457957921031870497.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite1457957921031870497.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite1457957921031870497.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite1457957921031870497.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/TempSuite1457957921031870497.adam/part-r-00003.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite1457957921031870497.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/TempSuite1457957921031870497.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2614021580215300345
/tmp/adamTestMvn1aEve53/TempSuite8377580263766222591.adam
/tmp/adamTestMvn1aEve53/TempSuite8377580263766222591.adam/.part-00000-308d9d71-c308-4019-8f08-9fd422b4c10f-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite8377580263766222591.adam/part-00000-308d9d71-c308-4019-8f08-9fd422b4c10f-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite8377580263766222591.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite8377580263766222591.adam/part-00003-308d9d71-c308-4019-8f08-9fd422b4c10f-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite8377580263766222591.adam/.part-00005-308d9d71-c308-4019-8f08-9fd422b4c10f-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite8377580263766222591.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite8377580263766222591.adam/.part-00003-308d9d71-c308-4019-8f08-9fd422b4c10f-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite8377580263766222591.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite8377580263766222591.adam/part-00005-308d9d71-c308-4019-8f08-9fd422b4c10f-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite8377580263766222591.adam/_samples.avro
/tmp/adamTestMvn1aEve53/TempSuite8377580263766222591.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite8377580263766222591.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite7270320948517604067
/tmp/adamTestMvn1aEve53/6741362744799688444
/tmp/adamTestMvn1aEve53/6741362744799688444/predicate.1.adam
/tmp/adamTestMvn1aEve53/6741362744799688444/predicate.1.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/6741362744799688444/predicate.1.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/6741362744799688444/predicate.1.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/6741362744799688444/predicate.1.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/6741362744799688444/predicate.1.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/6741362744799688444/predicate.1.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/6741362744799688444/predicate.1.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/6741362744799688444/predicate.1.adam/_metadata
/tmp/adamTestMvn1aEve53/6741362744799688444/predicate.1.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/6741362744799688444/predicate.1.adam/_common_metadata
/tmp/adamTestMvn1aEve53/6741362744799688444/predicate.1.adam/_references.avro
/tmp/adamTestMvn1aEve53/6741362744799688444/predicate.1.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/6741362744799688444/predicate.1.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/6741362744799688444/predicate.1.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite7880933933756195056.sam
/tmp/adamTestMvn1aEve53/8939017688241008784
/tmp/adamTestMvn1aEve53/8939017688241008784/.artificial.cram.crc
/tmp/adamTestMvn1aEve53/8939017688241008784/artificial.cram
/tmp/adamTestMvn1aEve53/8443439775727284283
/tmp/adamTestMvn1aEve53/8443439775727284283/sorted.lex.vcf
/tmp/adamTestMvn1aEve53/8443439775727284283/.sorted.lex.vcf.crc
/tmp/adamTestMvn1aEve53/TempSuite8353299127992539597.bam
/tmp/adamTestMvn1aEve53/TempSuite8353299127992539597.bam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite8353299127992539597.bam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite8353299127992539597.bam/.part-r-00000.bam.crc
/tmp/adamTestMvn1aEve53/TempSuite8353299127992539597.bam/part-r-00000.bam
/tmp/adamTestMvn1aEve53/TempSuite3099760857602436566.adam
/tmp/adamTestMvn1aEve53/TempSuite3099760857602436566.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite3099760857602436566.adam/part-r-00001.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite3099760857602436566.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite3099760857602436566.adam/part-r-00002.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite3099760857602436566.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite3099760857602436566.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite3099760857602436566.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite3099760857602436566.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite3099760857602436566.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite3099760857602436566.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite3099760857602436566.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite3099760857602436566.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite3099760857602436566.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite3099760857602436566.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite3099760857602436566.adam/part-r-00003.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite3099760857602436566.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite9137094041378289854.adam
/tmp/adamTestMvn1aEve53/TempSuite9137094041378289854.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite9137094041378289854.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite9137094041378289854.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite9137094041378289854.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite9137094041378289854.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite9137094041378289854.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite9137094041378289854.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite9137094041378289854.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite9137094041378289854.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite9137094041378289854.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite9137094041378289854.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite9137094041378289854.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/TempSuite9137094041378289854.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/TempSuite9137094041378289854.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite1784855944946229571
/tmp/adamTestMvn1aEve53/TempSuite8486816015481355024
/tmp/adamTestMvn1aEve53/.TempSuite4819768647821095151_2.fq.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite486488982734603353.gtf
/tmp/adamTestMvn1aEve53/TempSuite390623497840344803
/tmp/adamTestMvn1aEve53/SliceDatasetSuite1765340611681090170
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite378648223081797548
/tmp/adamTestMvn1aEve53/TempSuite2284653482884825860.fa
/tmp/adamTestMvn1aEve53/TempSuite2284653482884825860.fa/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite2284653482884825860.fa/.part-00000.crc
/tmp/adamTestMvn1aEve53/TempSuite2284653482884825860.fa/part-00000
/tmp/adamTestMvn1aEve53/TempSuite2284653482884825860.fa/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite711961253945770697
/tmp/adamTestMvn1aEve53/TempSuite5458601640413223943
/tmp/adamTestMvn1aEve53/sorted.sam7510121866865187936.sam
/tmp/adamTestMvn1aEve53/5283180138759774576
/tmp/adamTestMvn1aEve53/5283180138759774576/.ordered.sam.crc
/tmp/adamTestMvn1aEve53/5283180138759774576/ordered.sam
/tmp/adamTestMvn1aEve53/TempSuite6334807964977505469
/tmp/adamTestMvn1aEve53/TempSuite3903676401041675266.adam
/tmp/adamTestMvn1aEve53/TempSuite3903676401041675266.adam/referenceName=2
/tmp/adamTestMvn1aEve53/TempSuite3903676401041675266.adam/referenceName=2/positionBin=189
/tmp/adamTestMvn1aEve53/TempSuite3903676401041675266.adam/referenceName=2/positionBin=189/part-00000-a6ee3f36-be51-4a8c-8c93-fb623116b39d.c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite3903676401041675266.adam/referenceName=2/positionBin=189/.part-00000-a6ee3f36-be51-4a8c-8c93-fb623116b39d.c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite3903676401041675266.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite3903676401041675266.adam/._partitionedByStartPos.crc
/tmp/adamTestMvn1aEve53/TempSuite3903676401041675266.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite3903676401041675266.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite3903676401041675266.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite3903676401041675266.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite3903676401041675266.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite3903676401041675266.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/TempSuite3903676401041675266.adam/referenceName=1
/tmp/adamTestMvn1aEve53/TempSuite3903676401041675266.adam/referenceName=1/positionBin=26
/tmp/adamTestMvn1aEve53/TempSuite3903676401041675266.adam/referenceName=1/positionBin=26/part-00000-a6ee3f36-be51-4a8c-8c93-fb623116b39d.c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite3903676401041675266.adam/referenceName=1/positionBin=26/.part-00000-a6ee3f36-be51-4a8c-8c93-fb623116b39d.c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite3903676401041675266.adam/referenceName=1/positionBin=240
/tmp/adamTestMvn1aEve53/TempSuite3903676401041675266.adam/referenceName=1/positionBin=240/part-00000-a6ee3f36-be51-4a8c-8c93-fb623116b39d.c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite3903676401041675266.adam/referenceName=1/positionBin=240/.part-00000-a6ee3f36-be51-4a8c-8c93-fb623116b39d.c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite3903676401041675266.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/TempSuite3903676401041675266.adam/_partitionedByStartPos
/tmp/adamTestMvn1aEve53/javaAC3936355982877802822
/tmp/adamTestMvn1aEve53/javaAC3936355982877802822/testRdd.feature.adam
/tmp/adamTestMvn1aEve53/javaAC3936355982877802822/testRdd.feature.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvn1aEve53/javaAC3936355982877802822/testRdd.feature.adam/part-r-00001.gz.parquet
/tmp/adamTestMvn1aEve53/javaAC3936355982877802822/testRdd.feature.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/javaAC3936355982877802822/testRdd.feature.adam/part-r-00002.gz.parquet
/tmp/adamTestMvn1aEve53/javaAC3936355982877802822/testRdd.feature.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/javaAC3936355982877802822/testRdd.feature.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/javaAC3936355982877802822/testRdd.feature.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/javaAC3936355982877802822/testRdd.feature.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/javaAC3936355982877802822/testRdd.feature.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/javaAC3936355982877802822/testRdd.feature.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvn1aEve53/javaAC3936355982877802822/testRdd.feature.adam/_metadata
/tmp/adamTestMvn1aEve53/javaAC3936355982877802822/testRdd.feature.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvn1aEve53/javaAC3936355982877802822/testRdd.feature.adam/_samples.avro
/tmp/adamTestMvn1aEve53/javaAC3936355982877802822/testRdd.feature.adam/_common_metadata
/tmp/adamTestMvn1aEve53/javaAC3936355982877802822/testRdd.feature.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/javaAC3936355982877802822/testRdd.feature.adam/_references.avro
/tmp/adamTestMvn1aEve53/javaAC3936355982877802822/testRdd.feature.adam/part-r-00003.gz.parquet
/tmp/adamTestMvn1aEve53/javaAC3936355982877802822/testRdd.feature.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite7414782684860366343
/tmp/adamTestMvn1aEve53/TempSuite3934065538933806182.bed
/tmp/adamTestMvn1aEve53/TempSuite3934065538933806182.bed/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite3934065538933806182.bed/.part-00000.crc
/tmp/adamTestMvn1aEve53/TempSuite3934065538933806182.bed/part-00000
/tmp/adamTestMvn1aEve53/TempSuite3934065538933806182.bed/_SUCCESS
/tmp/adamTestMvn1aEve53/adam-cli.TransformFeaturesSuite7102710735995805605.adam
/tmp/adamTestMvn1aEve53/adam-cli.TransformFeaturesSuite7102710735995805605.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/adam-cli.TransformFeaturesSuite7102710735995805605.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/adam-cli.TransformFeaturesSuite7102710735995805605.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/adam-cli.TransformFeaturesSuite7102710735995805605.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/adam-cli.TransformFeaturesSuite7102710735995805605.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/adam-cli.TransformFeaturesSuite7102710735995805605.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/adam-cli.TransformFeaturesSuite7102710735995805605.adam/_metadata
/tmp/adamTestMvn1aEve53/adam-cli.TransformFeaturesSuite7102710735995805605.adam/_samples.avro
/tmp/adamTestMvn1aEve53/adam-cli.TransformFeaturesSuite7102710735995805605.adam/_common_metadata
/tmp/adamTestMvn1aEve53/adam-cli.TransformFeaturesSuite7102710735995805605.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/adam-cli.TransformFeaturesSuite7102710735995805605.adam/_references.avro
/tmp/adamTestMvn1aEve53/adam-cli.TransformFeaturesSuite7102710735995805605.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/bqsr13955815233898326256
/tmp/adamTestMvn1aEve53/bqsr13955815233898326256/bqsr1.bam
/tmp/adamTestMvn1aEve53/bqsr13955815233898326256/.bqsr1.bam.crc
/tmp/adamTestMvn1aEve53/7466100940316029653
/tmp/adamTestMvn1aEve53/7466100940316029653/.unordered.bam.crc
/tmp/adamTestMvn1aEve53/7466100940316029653/unordered.bam
/tmp/adamTestMvn1aEve53/TempSuite8292929179861506847.adam
/tmp/adamTestMvn1aEve53/TempSuite8292929179861506847.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite8292929179861506847.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite8292929179861506847.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite8292929179861506847.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite8292929179861506847.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite8292929179861506847.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite8292929179861506847.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite8292929179861506847.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite8292929179861506847.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite8292929179861506847.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite8292929179861506847.adam/_header
/tmp/adamTestMvn1aEve53/TempSuite8292929179861506847.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite8714701125336182657fragments.adam
/tmp/adamTestMvn1aEve53/TempSuite8714701125336182657fragments.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite8714701125336182657fragments.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite8714701125336182657fragments.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite8714701125336182657fragments.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite8714701125336182657fragments.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite8714701125336182657fragments.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite8714701125336182657fragments.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite8714701125336182657fragments.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite8714701125336182657fragments.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite8714701125336182657fragments.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite8714701125336182657fragments.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite8714701125336182657fragments.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/TempSuite8714701125336182657fragments.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/TempSuite8714701125336182657fragments.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/.TempSuite7880933933756195056.sam.crc
/tmp/adamTestMvn1aEve53/TempSuite7249179679871504374
/tmp/adamTestMvn1aEve53/TempSuite7593574904934473855.adam
/tmp/adamTestMvn1aEve53/TempSuite7593574904934473855.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite7593574904934473855.adam/part-00000-21e0d871-f633-4f9a-b388-5dabcaa2bd6c-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite7593574904934473855.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite7593574904934473855.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite7593574904934473855.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite7593574904934473855.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite7593574904934473855.adam/.part-00000-21e0d871-f633-4f9a-b388-5dabcaa2bd6c-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite7593574904934473855.adam/_header
/tmp/adamTestMvn1aEve53/TempSuite7483744915560739204.adam
/tmp/adamTestMvn1aEve53/TempSuite7483744915560739204.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite7483744915560739204.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite7483744915560739204.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite7483744915560739204.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite7483744915560739204.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite7483744915560739204.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite7483744915560739204.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite7483744915560739204.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite7483744915560739204.adam/_samples.avro
/tmp/adamTestMvn1aEve53/TempSuite7483744915560739204.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite7483744915560739204.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite7483744915560739204.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite7483744915560739204.adam/_header
/tmp/adamTestMvn1aEve53/TempSuite7483744915560739204.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/unordered.sam5404105940377477105.sam
/tmp/adamTestMvn1aEve53/TempSuite2633310910739369535
/tmp/adamTestMvn1aEve53/TempSuite1269344559243810983
/tmp/adamTestMvn1aEve53/TempSuite3635331428948745985.adam
/tmp/adamTestMvn1aEve53/TempSuite3635331428948745985.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite3635331428948745985.adam/part-r-00001.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite3635331428948745985.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite3635331428948745985.adam/part-r-00002.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite3635331428948745985.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite3635331428948745985.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite3635331428948745985.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite3635331428948745985.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite3635331428948745985.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite3635331428948745985.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite3635331428948745985.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite3635331428948745985.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite3635331428948745985.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite3635331428948745985.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite3635331428948745985.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite3635331428948745985.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite3635331428948745985.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/TempSuite3635331428948745985.adam/part-r-00003.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite3635331428948745985.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/TempSuite3635331428948745985.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite92428769129157794
/tmp/adamTestMvn1aEve53/bqsr1.sam3174052107340577308.sam
/tmp/adamTestMvn1aEve53/TempSuite1981728222086255487
/tmp/adamTestMvn1aEve53/adam-cli.TransformFeaturesSuite660810950155895361.adam
/tmp/adamTestMvn1aEve53/adam-cli.TransformFeaturesSuite660810950155895361.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/adam-cli.TransformFeaturesSuite660810950155895361.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/adam-cli.TransformFeaturesSuite660810950155895361.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/adam-cli.TransformFeaturesSuite660810950155895361.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/adam-cli.TransformFeaturesSuite660810950155895361.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/adam-cli.TransformFeaturesSuite660810950155895361.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/adam-cli.TransformFeaturesSuite660810950155895361.adam/_metadata
/tmp/adamTestMvn1aEve53/adam-cli.TransformFeaturesSuite660810950155895361.adam/_samples.avro
/tmp/adamTestMvn1aEve53/adam-cli.TransformFeaturesSuite660810950155895361.adam/_common_metadata
/tmp/adamTestMvn1aEve53/adam-cli.TransformFeaturesSuite660810950155895361.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/adam-cli.TransformFeaturesSuite660810950155895361.adam/_references.avro
/tmp/adamTestMvn1aEve53/adam-cli.TransformFeaturesSuite660810950155895361.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite1617844762640726459.adam
/tmp/adamTestMvn1aEve53/TempSuite1617844762640726459.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite1617844762640726459.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite1617844762640726459.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite1617844762640726459.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite1617844762640726459.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite1617844762640726459.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite1617844762640726459.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite1617844762640726459.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite1617844762640726459.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite1617844762640726459.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite1617844762640726459.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite1617844762640726459.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/TempSuite1617844762640726459.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/TempSuite1617844762640726459.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite1632344649827735882
/tmp/adamTestMvn1aEve53/TempSuite1289336840828269058
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite414965241092566071.interval_list
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite414965241092566071.interval_list/.part-00001.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite414965241092566071.interval_list/.part-00003.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite414965241092566071.interval_list/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite414965241092566071.interval_list/part-00003
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite414965241092566071.interval_list/.part-00000.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite414965241092566071.interval_list/part-00000
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite414965241092566071.interval_list/part-00002
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite414965241092566071.interval_list/_SUCCESS
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite414965241092566071.interval_list/part-00001
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite414965241092566071.interval_list/.part-00002.crc
/tmp/adamTestMvn1aEve53/3129266650337620576
/tmp/adamTestMvn1aEve53/3129266650337620576/unordered.sam
/tmp/adamTestMvn1aEve53/3129266650337620576/.unordered.sam.crc
/tmp/adamTestMvn1aEve53/SliceDatasetSuite6033297313055039973
/tmp/adamTestMvn1aEve53/3732022642489142928
/tmp/adamTestMvn1aEve53/3732022642489142928/sorted.vcf
/tmp/adamTestMvn1aEve53/3732022642489142928/.sorted.vcf.crc
/tmp/adamTestMvn1aEve53/TempSuite8513845392311677374
/tmp/adamTestMvn1aEve53/TempSuite4912662591403593815.bam
/tmp/adamTestMvn1aEve53/ordered.sam7669964706734381363.sam
/tmp/adamTestMvn1aEve53/unordered.sam4836776748187042616.sam
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2159960565395098606
/tmp/adamTestMvn1aEve53/TempSuite6961139575333042069.adam
/tmp/adamTestMvn1aEve53/TempSuite6961139575333042069.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite6961139575333042069.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite6961139575333042069.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite6961139575333042069.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite6961139575333042069.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite6961139575333042069.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite6961139575333042069.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite6961139575333042069.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite6961139575333042069.adam/_samples.avro
/tmp/adamTestMvn1aEve53/TempSuite6961139575333042069.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite6961139575333042069.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite6961139575333042069.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite6961139575333042069.adam/_header
/tmp/adamTestMvn1aEve53/TempSuite6961139575333042069.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/.TempSuite4912662591403593815.bam.crc
/tmp/adamTestMvn1aEve53/TempSuite5053707716233382117.fa
/tmp/adamTestMvn1aEve53/TempSuite5053707716233382117.fa/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite5053707716233382117.fa/.part-00000.crc
/tmp/adamTestMvn1aEve53/TempSuite5053707716233382117.fa/part-00000
/tmp/adamTestMvn1aEve53/TempSuite5053707716233382117.fa/_SUCCESS
/tmp/adamTestMvn1aEve53/ReadDatasetSuite3004132319832431856
/tmp/adamTestMvn1aEve53/TempSuite6311203010868743925reads12.sam_2
/tmp/adamTestMvn1aEve53/TempSuite344104911855657173.fq
/tmp/adamTestMvn1aEve53/TempSuite344104911855657173.fq/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite344104911855657173.fq/.part-00000.crc
/tmp/adamTestMvn1aEve53/TempSuite344104911855657173.fq/part-00000
/tmp/adamTestMvn1aEve53/TempSuite344104911855657173.fq/_SUCCESS
/tmp/adamTestMvn1aEve53/2026984742158143162
/tmp/adamTestMvn1aEve53/2026984742158143162/unordered.adam
/tmp/adamTestMvn1aEve53/2026984742158143162/unordered.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/2026984742158143162/unordered.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/2026984742158143162/unordered.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/2026984742158143162/unordered.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/2026984742158143162/unordered.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/2026984742158143162/unordered.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/2026984742158143162/unordered.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/2026984742158143162/unordered.adam/_metadata
/tmp/adamTestMvn1aEve53/2026984742158143162/unordered.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/2026984742158143162/unordered.adam/_common_metadata
/tmp/adamTestMvn1aEve53/2026984742158143162/unordered.adam/_references.avro
/tmp/adamTestMvn1aEve53/2026984742158143162/unordered.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/2026984742158143162/unordered.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/2026984742158143162/unordered.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite2743448430350111530
/tmp/adamTestMvn1aEve53/TempSuite1505106303766782669.bed
/tmp/adamTestMvn1aEve53/TempSuite1505106303766782669.bed/.part-00001.crc
/tmp/adamTestMvn1aEve53/TempSuite1505106303766782669.bed/.part-00003.crc
/tmp/adamTestMvn1aEve53/TempSuite1505106303766782669.bed/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite1505106303766782669.bed/part-00003
/tmp/adamTestMvn1aEve53/TempSuite1505106303766782669.bed/.part-00000.crc
/tmp/adamTestMvn1aEve53/TempSuite1505106303766782669.bed/part-00000
/tmp/adamTestMvn1aEve53/TempSuite1505106303766782669.bed/part-00002
/tmp/adamTestMvn1aEve53/TempSuite1505106303766782669.bed/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite1505106303766782669.bed/part-00001
/tmp/adamTestMvn1aEve53/TempSuite1505106303766782669.bed/.part-00002.crc
/tmp/adamTestMvn1aEve53/.FeatureDatasetFunctionsSuite3303855335120315560.narrowPeak.crc
/tmp/adamTestMvn1aEve53/6347523251318569861
/tmp/adamTestMvn1aEve53/6347523251318569861/.ordered.sam.crc
/tmp/adamTestMvn1aEve53/6347523251318569861/ordered.sam
/tmp/adamTestMvn1aEve53/TempSuite1248159898699223795
/tmp/adamTestMvn1aEve53/TempSuite6301040272868006026.adam
/tmp/adamTestMvn1aEve53/TempSuite6301040272868006026.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite6301040272868006026.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite6301040272868006026.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite6301040272868006026.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite6301040272868006026.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite6301040272868006026.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite6301040272868006026.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite6301040272868006026.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite6301040272868006026.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite6301040272868006026.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite6301040272868006026.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite6301040272868006026.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/TempSuite6301040272868006026.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/TempSuite6301040272868006026.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite5651984448772335804
/tmp/adamTestMvn1aEve53/TempSuite7022992903951449312.bed
/tmp/adamTestMvn1aEve53/TempSuite7022992903951449312.bed/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite7022992903951449312.bed/.part-00000.crc
/tmp/adamTestMvn1aEve53/TempSuite7022992903951449312.bed/part-00000
/tmp/adamTestMvn1aEve53/TempSuite7022992903951449312.bed/_SUCCESS
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite4149006041336147537
/tmp/adamTestMvn1aEve53/6838263208429534164
/tmp/adamTestMvn1aEve53/6838263208429534164/.artificial.cram.crc
/tmp/adamTestMvn1aEve53/6838263208429534164/artificial.cram
/tmp/adamTestMvn1aEve53/TempSuite8976110976362602929.adam
/tmp/adamTestMvn1aEve53/TempSuite8976110976362602929.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite8976110976362602929.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite8976110976362602929.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite8976110976362602929.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite8976110976362602929.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite8976110976362602929.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite8976110976362602929.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite8976110976362602929.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite8976110976362602929.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite8976110976362602929.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite8976110976362602929.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite8976110976362602929.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/TempSuite8976110976362602929.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/TempSuite8976110976362602929.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite8292929179861506847
/tmp/adamTestMvn1aEve53/TempSuite5963310385937299006
/tmp/adamTestMvn1aEve53/TempSuite3481569353112394036_2.fq
/tmp/adamTestMvn1aEve53/TempSuite3481569353112394036_2.fq/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite3481569353112394036_2.fq/.part-00000.crc
/tmp/adamTestMvn1aEve53/TempSuite3481569353112394036_2.fq/part-00000
/tmp/adamTestMvn1aEve53/TempSuite3481569353112394036_2.fq/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite7874417701278811114
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6618208183082345923
/tmp/adamTestMvn1aEve53/TempSuite712496687332796681.sam
/tmp/adamTestMvn1aEve53/TempSuite712496687332796681.sam/part-r-00000.sam
/tmp/adamTestMvn1aEve53/TempSuite712496687332796681.sam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite712496687332796681.sam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite712496687332796681.sam/.part-r-00000.sam.crc
/tmp/adamTestMvn1aEve53/unordered.sam6278487630732701652.sam
/tmp/adamTestMvn1aEve53/TempSuite3328401364509105852.adam
/tmp/adamTestMvn1aEve53/TempSuite3328401364509105852.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite3328401364509105852.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite3328401364509105852.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite3328401364509105852.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite3328401364509105852.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite3328401364509105852.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite3328401364509105852.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite3328401364509105852.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite3328401364509105852.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite3328401364509105852.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite3328401364509105852.adam/_header
/tmp/adamTestMvn1aEve53/TempSuite3328401364509105852.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite6713739841991634815_2.fq
/tmp/adamTestMvn1aEve53/TempSuite6713739841991634815_2.fq/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite6713739841991634815_2.fq/.part-00000.crc
/tmp/adamTestMvn1aEve53/TempSuite6713739841991634815_2.fq/part-00000
/tmp/adamTestMvn1aEve53/TempSuite6713739841991634815_2.fq/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite1644221934450037331
/tmp/adamTestMvn1aEve53/TempSuite8198630832854557060
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2614021580215300345.interval_list
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2614021580215300345.interval_list/.part-00001.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2614021580215300345.interval_list/.part-00003.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2614021580215300345.interval_list/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2614021580215300345.interval_list/part-00003
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2614021580215300345.interval_list/.part-00000.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2614021580215300345.interval_list/part-00000
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2614021580215300345.interval_list/part-00002
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2614021580215300345.interval_list/_SUCCESS
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2614021580215300345.interval_list/part-00001
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2614021580215300345.interval_list/.part-00002.crc
/tmp/adamTestMvn1aEve53/.FeatureDatasetFunctionsSuite7429771821504448566.bed.crc
/tmp/adamTestMvn1aEve53/TempSuite3775701763455540452
/tmp/adamTestMvn1aEve53/javaAC1989094346008856903
/tmp/adamTestMvn1aEve53/javaAC1989094346008856903/testRdd.coverage.adam
/tmp/adamTestMvn1aEve53/javaAC1989094346008856903/testRdd.coverage.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvn1aEve53/javaAC1989094346008856903/testRdd.coverage.adam/part-r-00001.gz.parquet
/tmp/adamTestMvn1aEve53/javaAC1989094346008856903/testRdd.coverage.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/javaAC1989094346008856903/testRdd.coverage.adam/part-r-00002.gz.parquet
/tmp/adamTestMvn1aEve53/javaAC1989094346008856903/testRdd.coverage.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/javaAC1989094346008856903/testRdd.coverage.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/javaAC1989094346008856903/testRdd.coverage.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/javaAC1989094346008856903/testRdd.coverage.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/javaAC1989094346008856903/testRdd.coverage.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/javaAC1989094346008856903/testRdd.coverage.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvn1aEve53/javaAC1989094346008856903/testRdd.coverage.adam/_metadata
/tmp/adamTestMvn1aEve53/javaAC1989094346008856903/testRdd.coverage.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvn1aEve53/javaAC1989094346008856903/testRdd.coverage.adam/_samples.avro
/tmp/adamTestMvn1aEve53/javaAC1989094346008856903/testRdd.coverage.adam/_common_metadata
/tmp/adamTestMvn1aEve53/javaAC1989094346008856903/testRdd.coverage.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/javaAC1989094346008856903/testRdd.coverage.adam/_references.avro
/tmp/adamTestMvn1aEve53/javaAC1989094346008856903/testRdd.coverage.adam/part-r-00003.gz.parquet
/tmp/adamTestMvn1aEve53/javaAC1989094346008856903/testRdd.coverage.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2657099416096427970
/tmp/adamTestMvn1aEve53/7293871729320191660
/tmp/adamTestMvn1aEve53/7293871729320191660/unordered.sam
/tmp/adamTestMvn1aEve53/7293871729320191660/.unordered.sam.crc
/tmp/adamTestMvn1aEve53/TempSuite5702792481859418544
/tmp/adamTestMvn1aEve53/random.vcf1365975291238652418.vcf
/tmp/adamTestMvn1aEve53/TempSuite6129808224268620096_1.fq
/tmp/adamTestMvn1aEve53/TempSuite6129808224268620096_1.fq/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite6129808224268620096_1.fq/.part-00000.crc
/tmp/adamTestMvn1aEve53/TempSuite6129808224268620096_1.fq/part-00000
/tmp/adamTestMvn1aEve53/TempSuite6129808224268620096_1.fq/_SUCCESS
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite5055438290976542707.interval_list
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite5055438290976542707.interval_list/.part-00001.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite5055438290976542707.interval_list/.part-00003.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite5055438290976542707.interval_list/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite5055438290976542707.interval_list/part-00003
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite5055438290976542707.interval_list/.part-00000.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite5055438290976542707.interval_list/part-00000
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite5055438290976542707.interval_list/part-00002
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite5055438290976542707.interval_list/_SUCCESS
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite5055438290976542707.interval_list/part-00001
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite5055438290976542707.interval_list/.part-00002.crc
/tmp/adamTestMvn1aEve53/TempSuite1697440829626619237
/tmp/adamTestMvn1aEve53/TempSuite8515962790465681135.adam
/tmp/adamTestMvn1aEve53/TempSuite8515962790465681135.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite8515962790465681135.adam/part-00000-8c10278c-19b8-4bdc-b761-9273a1da23be-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite8515962790465681135.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite8515962790465681135.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite8515962790465681135.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite8515962790465681135.adam/.part-00000-8c10278c-19b8-4bdc-b761-9273a1da23be-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite8515962790465681135.adam/_samples.avro
/tmp/adamTestMvn1aEve53/TempSuite8515962790465681135.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite8515962790465681135.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite8515962790465681135.adam/_header
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2019859250411959994.interval_list
/tmp/adamTestMvn1aEve53/sorted-variants.vcf5188350817525258741.vcf
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite1434119705462161672.gtf
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite1434119705462161672.gtf/.part-00001.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite1434119705462161672.gtf/.part-00003.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite1434119705462161672.gtf/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite1434119705462161672.gtf/part-00003
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite1434119705462161672.gtf/.part-00000.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite1434119705462161672.gtf/part-00000
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite1434119705462161672.gtf/part-00002
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite1434119705462161672.gtf/_SUCCESS
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite1434119705462161672.gtf/part-00001
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite1434119705462161672.gtf/.part-00002.crc
/tmp/adamTestMvn1aEve53/TempSuite3117865421809327593
/tmp/adamTestMvn1aEve53/.TempSuite2828721102120452764.bam.crc
/tmp/adamTestMvn1aEve53/TempSuite357335526382327751.adam
/tmp/adamTestMvn1aEve53/TempSuite357335526382327751.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite357335526382327751.adam/._partitionedByStartPos.crc
/tmp/adamTestMvn1aEve53/TempSuite357335526382327751.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite357335526382327751.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite357335526382327751.adam/_samples.avro
/tmp/adamTestMvn1aEve53/TempSuite357335526382327751.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite357335526382327751.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite357335526382327751.adam/referenceName=1
/tmp/adamTestMvn1aEve53/TempSuite357335526382327751.adam/referenceName=1/positionBin=14
/tmp/adamTestMvn1aEve53/TempSuite357335526382327751.adam/referenceName=1/positionBin=14/.part-00000-225829a9-ea36-493e-91c7-f511133bbeb7.c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite357335526382327751.adam/referenceName=1/positionBin=14/part-00000-225829a9-ea36-493e-91c7-f511133bbeb7.c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite357335526382327751.adam/referenceName=1/positionBin=169
/tmp/adamTestMvn1aEve53/TempSuite357335526382327751.adam/referenceName=1/positionBin=169/part-00001-225829a9-ea36-493e-91c7-f511133bbeb7.c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite357335526382327751.adam/referenceName=1/positionBin=169/.part-00001-225829a9-ea36-493e-91c7-f511133bbeb7.c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite357335526382327751.adam/referenceName=1/positionBin=240
/tmp/adamTestMvn1aEve53/TempSuite357335526382327751.adam/referenceName=1/positionBin=240/.part-00002-225829a9-ea36-493e-91c7-f511133bbeb7.c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite357335526382327751.adam/referenceName=1/positionBin=240/part-00002-225829a9-ea36-493e-91c7-f511133bbeb7.c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite357335526382327751.adam/referenceName=1/positionBin=0
/tmp/adamTestMvn1aEve53/TempSuite357335526382327751.adam/referenceName=1/positionBin=0/.part-00000-225829a9-ea36-493e-91c7-f511133bbeb7.c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite357335526382327751.adam/referenceName=1/positionBin=0/part-00000-225829a9-ea36-493e-91c7-f511133bbeb7.c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite357335526382327751.adam/_partitionedByStartPos
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6075293857759281125.narrowPeak
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6075293857759281125.narrowPeak/.part-00001.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6075293857759281125.narrowPeak/.part-00003.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6075293857759281125.narrowPeak/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6075293857759281125.narrowPeak/part-00003
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6075293857759281125.narrowPeak/.part-00000.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6075293857759281125.narrowPeak/part-00000
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6075293857759281125.narrowPeak/part-00002
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6075293857759281125.narrowPeak/_SUCCESS
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6075293857759281125.narrowPeak/part-00001
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6075293857759281125.narrowPeak/.part-00002.crc
/tmp/adamTestMvn1aEve53/TempSuite8949181634299309919
/tmp/adamTestMvn1aEve53/TempSuite5242808864114880682.adam
/tmp/adamTestMvn1aEve53/TempSuite5242808864114880682.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite5242808864114880682.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite5242808864114880682.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite5242808864114880682.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite5242808864114880682.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite5242808864114880682.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite5242808864114880682.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite5242808864114880682.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite5242808864114880682.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite5242808864114880682.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite5242808864114880682.adam/_header
/tmp/adamTestMvn1aEve53/TempSuite5242808864114880682.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite5078266978505668954
/tmp/adamTestMvn1aEve53/TempSuite2744398513530491255.adam
/tmp/adamTestMvn1aEve53/TempSuite2744398513530491255.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite2744398513530491255.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite2744398513530491255.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite2744398513530491255.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite2744398513530491255.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite2744398513530491255.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite2744398513530491255.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite2744398513530491255.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite2744398513530491255.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite2744398513530491255.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite2744398513530491255.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite2744398513530491255.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/TempSuite2744398513530491255.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/TempSuite2744398513530491255.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite4726639714627329479.adam
/tmp/adamTestMvn1aEve53/TempSuite4726639714627329479.adam/referenceName=13
/tmp/adamTestMvn1aEve53/TempSuite4726639714627329479.adam/referenceName=13/positionBin=0
/tmp/adamTestMvn1aEve53/TempSuite4726639714627329479.adam/referenceName=13/positionBin=0/.part-00000-5bb9e95c-521b-4d39-b3f2-3f0cd8f4ddfe.c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite4726639714627329479.adam/referenceName=13/positionBin=0/part-00000-5bb9e95c-521b-4d39-b3f2-3f0cd8f4ddfe.c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite4726639714627329479.adam/referenceName=2
/tmp/adamTestMvn1aEve53/TempSuite4726639714627329479.adam/referenceName=2/positionBin=0
/tmp/adamTestMvn1aEve53/TempSuite4726639714627329479.adam/referenceName=2/positionBin=0/.part-00000-5bb9e95c-521b-4d39-b3f2-3f0cd8f4ddfe.c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite4726639714627329479.adam/referenceName=2/positionBin=0/part-00000-5bb9e95c-521b-4d39-b3f2-3f0cd8f4ddfe.c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite4726639714627329479.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite4726639714627329479.adam/._partitionedByStartPos.crc
/tmp/adamTestMvn1aEve53/TempSuite4726639714627329479.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite4726639714627329479.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite4726639714627329479.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite4726639714627329479.adam/_samples.avro
/tmp/adamTestMvn1aEve53/TempSuite4726639714627329479.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite4726639714627329479.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite4726639714627329479.adam/referenceName=1
/tmp/adamTestMvn1aEve53/TempSuite4726639714627329479.adam/referenceName=1/positionBin=0
/tmp/adamTestMvn1aEve53/TempSuite4726639714627329479.adam/referenceName=1/positionBin=0/.part-00000-5bb9e95c-521b-4d39-b3f2-3f0cd8f4ddfe.c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite4726639714627329479.adam/referenceName=1/positionBin=0/part-00000-5bb9e95c-521b-4d39-b3f2-3f0cd8f4ddfe.c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite4726639714627329479.adam/_header
/tmp/adamTestMvn1aEve53/TempSuite4726639714627329479.adam/_partitionedByStartPos
/tmp/adamTestMvn1aEve53/TempSuite520927760172617020.adam
/tmp/adamTestMvn1aEve53/TempSuite520927760172617020.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite520927760172617020.adam/part-r-00001.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite520927760172617020.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite520927760172617020.adam/part-r-00002.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite520927760172617020.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite520927760172617020.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite520927760172617020.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite520927760172617020.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite520927760172617020.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite520927760172617020.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite520927760172617020.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite520927760172617020.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite520927760172617020.adam/_samples.avro
/tmp/adamTestMvn1aEve53/TempSuite520927760172617020.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite520927760172617020.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite520927760172617020.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite520927760172617020.adam/part-r-00003.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite520927760172617020.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/bqsr1.sam2269671600838789165.sam
/tmp/adamTestMvn1aEve53/TempSuite6129808224268620096
/tmp/adamTestMvn1aEve53/TempSuite8799129909505605311.adam
/tmp/adamTestMvn1aEve53/TempSuite8799129909505605311.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite8799129909505605311.adam/part-r-00001.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite8799129909505605311.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite8799129909505605311.adam/part-r-00002.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite8799129909505605311.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite8799129909505605311.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite8799129909505605311.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite8799129909505605311.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite8799129909505605311.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite8799129909505605311.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite8799129909505605311.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite8799129909505605311.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite8799129909505605311.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite8799129909505605311.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite8799129909505605311.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite8799129909505605311.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite8799129909505605311.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/TempSuite8799129909505605311.adam/part-r-00003.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite8799129909505605311.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/TempSuite8799129909505605311.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite1556980983252521914
/tmp/adamTestMvn1aEve53/.TempSuite7292125524155588931.bam.crc
/tmp/adamTestMvn1aEve53/377849211781178054
/tmp/adamTestMvn1aEve53/377849211781178054/out.bam
/tmp/adamTestMvn1aEve53/377849211781178054/out.bam_head
/tmp/adamTestMvn1aEve53/377849211781178054/.out.bam.crc
/tmp/adamTestMvn1aEve53/377849211781178054/out.bam_tail
/tmp/adamTestMvn1aEve53/377849211781178054/out.bam_tail/.part-r-00002.bam.crc
/tmp/adamTestMvn1aEve53/377849211781178054/out.bam_tail/part-r-00002.bam
/tmp/adamTestMvn1aEve53/377849211781178054/out.bam_tail/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/377849211781178054/out.bam_tail/part-r-00001.bam
/tmp/adamTestMvn1aEve53/377849211781178054/out.bam_tail/_SUCCESS
/tmp/adamTestMvn1aEve53/377849211781178054/out.bam_tail/part-r-00003.bam
/tmp/adamTestMvn1aEve53/377849211781178054/out.bam_tail/.part-r-00003.bam.crc
/tmp/adamTestMvn1aEve53/377849211781178054/out.bam_tail/.part-r-00000.bam.crc
/tmp/adamTestMvn1aEve53/377849211781178054/out.bam_tail/part-r-00000.bam
/tmp/adamTestMvn1aEve53/377849211781178054/out.bam_tail/.part-r-00001.bam.crc
/tmp/adamTestMvn1aEve53/377849211781178054/.out.bam_head.crc
/tmp/adamTestMvn1aEve53/TempSuite8138553385444146667.adam
/tmp/adamTestMvn1aEve53/TempSuite8138553385444146667.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite8138553385444146667.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite8138553385444146667.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite8138553385444146667.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite8138553385444146667.adam/.part-00000-3a932d8a-fce3-42cf-b8dd-560822dd3481-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite8138553385444146667.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite8138553385444146667.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite8138553385444146667.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/TempSuite8138553385444146667.adam/part-00000-3a932d8a-fce3-42cf-b8dd-560822dd3481-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite8138553385444146667.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite5898860761004472092.narrowPeak
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite5898860761004472092.narrowPeak/.part-00001.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite5898860761004472092.narrowPeak/.part-00003.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite5898860761004472092.narrowPeak/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite5898860761004472092.narrowPeak/part-00003
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite5898860761004472092.narrowPeak/.part-00000.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite5898860761004472092.narrowPeak/part-00000
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite5898860761004472092.narrowPeak/part-00002
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite5898860761004472092.narrowPeak/_SUCCESS
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite5898860761004472092.narrowPeak/part-00001
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite5898860761004472092.narrowPeak/.part-00002.crc
/tmp/adamTestMvn1aEve53/trinity.fa2957919640736444663.fa
/tmp/adamTestMvn1aEve53/TempSuite563555183014033224.adam
/tmp/adamTestMvn1aEve53/TempSuite563555183014033224.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite563555183014033224.adam/part-00000-8b39b17f-b78c-4b34-b016-f1d69dd236b7-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite563555183014033224.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite563555183014033224.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite563555183014033224.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite563555183014033224.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite563555183014033224.adam/.part-00000-8b39b17f-b78c-4b34-b016-f1d69dd236b7-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite563555183014033224.adam/_header
/tmp/adamTestMvn1aEve53/TempSuite4033534221669132302
/tmp/adamTestMvn1aEve53/TempSuite8851823247758389016
/tmp/adamTestMvn1aEve53/TempSuite4603593439587113360
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite1204046769010805856
/tmp/adamTestMvn1aEve53/TempSuite7033453440049655612
/tmp/adamTestMvn1aEve53/TempSuite5475553646754299825
/tmp/adamTestMvn1aEve53/TempSuite5519762446005010883.adam
/tmp/adamTestMvn1aEve53/TempSuite5519762446005010883.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite5519762446005010883.adam/.part-00000-da40aa2e-d371-4f9d-b840-d2a7738eabde-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite5519762446005010883.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite5519762446005010883.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite5519762446005010883.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite5519762446005010883.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite5519762446005010883.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite5519762446005010883.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/TempSuite5519762446005010883.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/TempSuite5519762446005010883.adam/part-00000-da40aa2e-d371-4f9d-b840-d2a7738eabde-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite404025371748288610.adam
/tmp/adamTestMvn1aEve53/TempSuite404025371748288610.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite404025371748288610.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite404025371748288610.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite404025371748288610.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite404025371748288610.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite404025371748288610.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite404025371748288610.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite404025371748288610.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite404025371748288610.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite404025371748288610.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite404025371748288610.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite404025371748288610.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/TempSuite404025371748288610.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/TempSuite404025371748288610.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite3174470337555496395
/tmp/adamTestMvn1aEve53/TempSuite1686598164378045527.adam
/tmp/adamTestMvn1aEve53/TempSuite1686598164378045527.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite1686598164378045527.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite1686598164378045527.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite1686598164378045527.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite1686598164378045527.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite1686598164378045527.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite1686598164378045527.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite1686598164378045527.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite1686598164378045527.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite1686598164378045527.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite1686598164378045527.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite1686598164378045527.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/TempSuite1686598164378045527.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/TempSuite1686598164378045527.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/1596760089147-0
/tmp/adamTestMvn1aEve53/1596760089147-0/bqsr1-r2.fq
/tmp/adamTestMvn1aEve53/1596760089147-0/bqsr1-r2.fq/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/1596760089147-0/bqsr1-r2.fq/.part-00000.crc
/tmp/adamTestMvn1aEve53/1596760089147-0/bqsr1-r2.fq/part-00000
/tmp/adamTestMvn1aEve53/1596760089147-0/bqsr1-r2.fq/_SUCCESS
/tmp/adamTestMvn1aEve53/1596760089147-0/bqsr1-r1.fq
/tmp/adamTestMvn1aEve53/1596760089147-0/bqsr1-r1.fq/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/1596760089147-0/bqsr1-r1.fq/.part-00000.crc
/tmp/adamTestMvn1aEve53/1596760089147-0/bqsr1-r1.fq/part-00000
/tmp/adamTestMvn1aEve53/1596760089147-0/bqsr1-r1.fq/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite1738208867696090280
/tmp/adamTestMvn1aEve53/unordered.sam7384641569803860577.sam
/tmp/adamTestMvn1aEve53/TempSuite3663657982204823826
/tmp/adamTestMvn1aEve53/TempSuite7672267946039590419.fa
/tmp/adamTestMvn1aEve53/TempSuite7672267946039590419.fa/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite7672267946039590419.fa/.part-00000.crc
/tmp/adamTestMvn1aEve53/TempSuite7672267946039590419.fa/part-00000
/tmp/adamTestMvn1aEve53/TempSuite7672267946039590419.fa/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite796488203368244217
/tmp/adamTestMvn1aEve53/TempSuite881780151206888408
/tmp/adamTestMvn1aEve53/TempSuite6644307989407038624
/tmp/adamTestMvn1aEve53/sorted.sam7910325139345343914.sam
/tmp/adamTestMvn1aEve53/TempSuite1343511327312717674
/tmp/adamTestMvn1aEve53/TempSuite571060105624091593.bam
/tmp/adamTestMvn1aEve53/TempSuite571060105624091593.bam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite571060105624091593.bam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite571060105624091593.bam/.part-r-00000.bam.crc
/tmp/adamTestMvn1aEve53/TempSuite571060105624091593.bam/part-r-00000.bam
/tmp/adamTestMvn1aEve53/TempSuite4033534221669132302.adam
/tmp/adamTestMvn1aEve53/TempSuite4033534221669132302.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite4033534221669132302.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite4033534221669132302.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite4033534221669132302.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite4033534221669132302.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite4033534221669132302.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite4033534221669132302.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite4033534221669132302.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite4033534221669132302.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite4033534221669132302.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite4033534221669132302.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite4033534221669132302.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/TempSuite4033534221669132302.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/TempSuite4033534221669132302.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite2711753320998115209.fq
/tmp/adamTestMvn1aEve53/TempSuite2711753320998115209.fq/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite2711753320998115209.fq/.part-00000.crc
/tmp/adamTestMvn1aEve53/TempSuite2711753320998115209.fq/part-00000
/tmp/adamTestMvn1aEve53/TempSuite2711753320998115209.fq/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite6713739841991634815
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite7062198873371886705.bed
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite7062198873371886705.bed/.part-00001.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite7062198873371886705.bed/.part-00003.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite7062198873371886705.bed/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite7062198873371886705.bed/part-00003
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite7062198873371886705.bed/.part-00000.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite7062198873371886705.bed/part-00000
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite7062198873371886705.bed/part-00002
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite7062198873371886705.bed/_SUCCESS
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite7062198873371886705.bed/part-00001
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite7062198873371886705.bed/.part-00002.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite956834639593105906.gtf
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite956834639593105906.gtf/.part-00001.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite956834639593105906.gtf/.part-00003.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite956834639593105906.gtf/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite956834639593105906.gtf/part-00003
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite956834639593105906.gtf/.part-00000.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite956834639593105906.gtf/part-00000
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite956834639593105906.gtf/part-00002
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite956834639593105906.gtf/_SUCCESS
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite956834639593105906.gtf/part-00001
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite956834639593105906.gtf/.part-00002.crc
/tmp/adamTestMvn1aEve53/8554654265487636573
/tmp/adamTestMvn1aEve53/8554654265487636573/artificial.cram
/tmp/adamTestMvn1aEve53/8554654265487636573/artificial.cram/part-r-00000.cram
/tmp/adamTestMvn1aEve53/8554654265487636573/artificial.cram/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/8554654265487636573/artificial.cram/_SUCCESS
/tmp/adamTestMvn1aEve53/8554654265487636573/artificial.cram/.part-r-00000.cram.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite8262764966277498423
/tmp/adamTestMvn1aEve53/TempSuite3640578649270830325.vcf
/tmp/adamTestMvn1aEve53/TempSuite3640578649270830325.vcf/.part-r-00000.crc
/tmp/adamTestMvn1aEve53/TempSuite3640578649270830325.vcf/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite3640578649270830325.vcf/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite3640578649270830325.vcf/part-r-00000
/tmp/adamTestMvn1aEve53/TempSuite8216613769503053873
/tmp/adamTestMvn1aEve53/small.vcf8279304563958391554.vcf
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite8718524070325188962
/tmp/adamTestMvn1aEve53/TempSuite1343511327312717674.bam
/tmp/adamTestMvn1aEve53/TempSuite1343511327312717674.bam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite1343511327312717674.bam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite1343511327312717674.bam/.part-r-00000.bam.crc
/tmp/adamTestMvn1aEve53/TempSuite1343511327312717674.bam/part-r-00000.bam
/tmp/adamTestMvn1aEve53/TempSuite1943934033132609152
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite7836445841974959216.fasta
/tmp/adamTestMvn1aEve53/random.vcf7470498991793049970.vcf
/tmp/adamTestMvn1aEve53/random.vcf5608052270712862418.vcf
/tmp/adamTestMvn1aEve53/8756403916785899678
/tmp/adamTestMvn1aEve53/8756403916785899678/sorted.lex.vcf
/tmp/adamTestMvn1aEve53/8756403916785899678/.sorted.lex.vcf.crc
/tmp/adamTestMvn1aEve53/TempSuite6301040272868006026
/tmp/adamTestMvn1aEve53/TempSuite5593980715431638474.adam
/tmp/adamTestMvn1aEve53/TempSuite5593980715431638474.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite5593980715431638474.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite5593980715431638474.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite5593980715431638474.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite5593980715431638474.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite5593980715431638474.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite5593980715431638474.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite5593980715431638474.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite5593980715431638474.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite5593980715431638474.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite5593980715431638474.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite5593980715431638474.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/TempSuite5593980715431638474.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/TempSuite5593980715431638474.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite2597133733430168522
/tmp/adamTestMvn1aEve53/TempSuite8976110976362602929
/tmp/adamTestMvn1aEve53/268532058410413744
/tmp/adamTestMvn1aEve53/268532058410413744/predicate.2.adam
/tmp/adamTestMvn1aEve53/268532058410413744/predicate.2.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/268532058410413744/predicate.2.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/268532058410413744/predicate.2.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/268532058410413744/predicate.2.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/268532058410413744/predicate.2.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/268532058410413744/predicate.2.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/268532058410413744/predicate.2.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/268532058410413744/predicate.2.adam/_metadata
/tmp/adamTestMvn1aEve53/268532058410413744/predicate.2.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/268532058410413744/predicate.2.adam/_common_metadata
/tmp/adamTestMvn1aEve53/268532058410413744/predicate.2.adam/_references.avro
/tmp/adamTestMvn1aEve53/268532058410413744/predicate.2.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/268532058410413744/predicate.2.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/268532058410413744/predicate.2.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/53126665909099319
/tmp/adamTestMvn1aEve53/53126665909099319/unordered.sam
/tmp/adamTestMvn1aEve53/53126665909099319/.unordered.sam.crc
/tmp/adamTestMvn1aEve53/TempSuite4872160328177957379
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2731256703022935247.gff3
/tmp/adamTestMvn1aEve53/TempSuite4238539854885668860
/tmp/adamTestMvn1aEve53/TempSuite1106067750970500566.adam
/tmp/adamTestMvn1aEve53/TempSuite1106067750970500566.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite1106067750970500566.adam/part-r-00001.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite1106067750970500566.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite1106067750970500566.adam/part-r-00002.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite1106067750970500566.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite1106067750970500566.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite1106067750970500566.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite1106067750970500566.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite1106067750970500566.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite1106067750970500566.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite1106067750970500566.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite1106067750970500566.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite1106067750970500566.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite1106067750970500566.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite1106067750970500566.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite1106067750970500566.adam/part-r-00003.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite1106067750970500566.adam/_header
/tmp/adamTestMvn1aEve53/TempSuite1106067750970500566.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite1556980983252521914.adam
/tmp/adamTestMvn1aEve53/TempSuite1556980983252521914.adam/part-00002-c44c568f-393b-48b4-b33e-9e99a4abaa99-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite1556980983252521914.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite1556980983252521914.adam/.part-00002-c44c568f-393b-48b4-b33e-9e99a4abaa99-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite1556980983252521914.adam/.part-00001-c44c568f-393b-48b4-b33e-9e99a4abaa99-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite1556980983252521914.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite1556980983252521914.adam/part-00000-c44c568f-393b-48b4-b33e-9e99a4abaa99-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite1556980983252521914.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite1556980983252521914.adam/part-00001-c44c568f-393b-48b4-b33e-9e99a4abaa99-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite1556980983252521914.adam/_samples.avro
/tmp/adamTestMvn1aEve53/TempSuite1556980983252521914.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite1556980983252521914.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite1556980983252521914.adam/.part-00000-c44c568f-393b-48b4-b33e-9e99a4abaa99-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite4803879394990338052
/tmp/adamTestMvn1aEve53/TempSuite873598174641386533
/tmp/adamTestMvn1aEve53/TempSuite3172051870832316411.bed
/tmp/adamTestMvn1aEve53/TempSuite3172051870832316411.bed/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite3172051870832316411.bed/.part-00000.crc
/tmp/adamTestMvn1aEve53/TempSuite3172051870832316411.bed/part-00000
/tmp/adamTestMvn1aEve53/TempSuite3172051870832316411.bed/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite1393662803655003343
/tmp/adamTestMvn1aEve53/TempSuite5441185273931244321
/tmp/adamTestMvn1aEve53/TempSuite624579404053099785
/tmp/adamTestMvn1aEve53/ReadDatasetSuite3929045430932925116.adam
/tmp/adamTestMvn1aEve53/ReadDatasetSuite3929045430932925116.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvn1aEve53/ReadDatasetSuite3929045430932925116.adam/part-r-00001.gz.parquet
/tmp/adamTestMvn1aEve53/ReadDatasetSuite3929045430932925116.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/ReadDatasetSuite3929045430932925116.adam/part-r-00002.gz.parquet
/tmp/adamTestMvn1aEve53/ReadDatasetSuite3929045430932925116.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/ReadDatasetSuite3929045430932925116.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/ReadDatasetSuite3929045430932925116.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/ReadDatasetSuite3929045430932925116.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/ReadDatasetSuite3929045430932925116.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/ReadDatasetSuite3929045430932925116.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvn1aEve53/ReadDatasetSuite3929045430932925116.adam/_metadata
/tmp/adamTestMvn1aEve53/ReadDatasetSuite3929045430932925116.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvn1aEve53/ReadDatasetSuite3929045430932925116.adam/_common_metadata
/tmp/adamTestMvn1aEve53/ReadDatasetSuite3929045430932925116.adam/_references.avro
/tmp/adamTestMvn1aEve53/ReadDatasetSuite3929045430932925116.adam/part-r-00003.gz.parquet
/tmp/adamTestMvn1aEve53/ReadDatasetSuite3929045430932925116.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite2626257493836480247.bed
/tmp/adamTestMvn1aEve53/TempSuite2626257493836480247.bed/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite2626257493836480247.bed/.part-00000.crc
/tmp/adamTestMvn1aEve53/TempSuite2626257493836480247.bed/part-00000
/tmp/adamTestMvn1aEve53/TempSuite2626257493836480247.bed/_SUCCESS
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite3301860964827075203.adam
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite3301860964827075203.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite3301860964827075203.adam/part-r-00001.gz.parquet
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite3301860964827075203.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite3301860964827075203.adam/part-r-00002.gz.parquet
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite3301860964827075203.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite3301860964827075203.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite3301860964827075203.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite3301860964827075203.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite3301860964827075203.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite3301860964827075203.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite3301860964827075203.adam/_metadata
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite3301860964827075203.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite3301860964827075203.adam/_common_metadata
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite3301860964827075203.adam/_references.avro
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite3301860964827075203.adam/part-r-00003.gz.parquet
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite3301860964827075203.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite7752347124426237619
/tmp/adamTestMvn1aEve53/TempSuite1440927688619027564.adam
/tmp/adamTestMvn1aEve53/TempSuite1440927688619027564.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite1440927688619027564.adam/._partitionedByStartPos.crc
/tmp/adamTestMvn1aEve53/TempSuite1440927688619027564.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite1440927688619027564.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite1440927688619027564.adam/_samples.avro
/tmp/adamTestMvn1aEve53/TempSuite1440927688619027564.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite1440927688619027564.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite1440927688619027564.adam/referenceName=1
/tmp/adamTestMvn1aEve53/TempSuite1440927688619027564.adam/referenceName=1/positionBin=14
/tmp/adamTestMvn1aEve53/TempSuite1440927688619027564.adam/referenceName=1/positionBin=14/.part-00000-bacc94bd-5613-4f25-9adb-7ecd31ea96de.c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite1440927688619027564.adam/referenceName=1/positionBin=14/part-00000-bacc94bd-5613-4f25-9adb-7ecd31ea96de.c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite1440927688619027564.adam/referenceName=1/positionBin=169
/tmp/adamTestMvn1aEve53/TempSuite1440927688619027564.adam/referenceName=1/positionBin=169/.part-00001-bacc94bd-5613-4f25-9adb-7ecd31ea96de.c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite1440927688619027564.adam/referenceName=1/positionBin=169/part-00001-bacc94bd-5613-4f25-9adb-7ecd31ea96de.c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite1440927688619027564.adam/referenceName=1/positionBin=240
/tmp/adamTestMvn1aEve53/TempSuite1440927688619027564.adam/referenceName=1/positionBin=240/part-00002-bacc94bd-5613-4f25-9adb-7ecd31ea96de.c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite1440927688619027564.adam/referenceName=1/positionBin=240/.part-00002-bacc94bd-5613-4f25-9adb-7ecd31ea96de.c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite1440927688619027564.adam/referenceName=1/positionBin=0
/tmp/adamTestMvn1aEve53/TempSuite1440927688619027564.adam/referenceName=1/positionBin=0/.part-00000-bacc94bd-5613-4f25-9adb-7ecd31ea96de.c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite1440927688619027564.adam/referenceName=1/positionBin=0/part-00000-bacc94bd-5613-4f25-9adb-7ecd31ea96de.c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite1440927688619027564.adam/_partitionedByStartPos
/tmp/adamTestMvn1aEve53/TempSuite712496687332796681
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2657099416096427970.gtf
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2657099416096427970.gtf/.part-00001.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2657099416096427970.gtf/.part-00003.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2657099416096427970.gtf/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2657099416096427970.gtf/part-00003
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2657099416096427970.gtf/.part-00000.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2657099416096427970.gtf/part-00000
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2657099416096427970.gtf/part-00002
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2657099416096427970.gtf/_SUCCESS
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2657099416096427970.gtf/part-00001
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2657099416096427970.gtf/.part-00002.crc
/tmp/adamTestMvn1aEve53/TempSuite2791074731507162860.sam
/tmp/adamTestMvn1aEve53/TempSuite2791074731507162860.sam/part-r-00000.sam
/tmp/adamTestMvn1aEve53/TempSuite2791074731507162860.sam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite2791074731507162860.sam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite2791074731507162860.sam/.part-r-00000.sam.crc
/tmp/adamTestMvn1aEve53/TempSuite7836821171516845910
/tmp/adamTestMvn1aEve53/TempSuite5798561161722449001
/tmp/adamTestMvn1aEve53/javaAC1037852165160273384
/tmp/adamTestMvn1aEve53/javaAC1037852165160273384/testRdd.genotype.adam
/tmp/adamTestMvn1aEve53/javaAC1037852165160273384/testRdd.genotype.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/javaAC1037852165160273384/testRdd.genotype.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/javaAC1037852165160273384/testRdd.genotype.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/javaAC1037852165160273384/testRdd.genotype.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/javaAC1037852165160273384/testRdd.genotype.adam/._header.crc
/tmp/adamTestMvn1aEve53/javaAC1037852165160273384/testRdd.genotype.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/javaAC1037852165160273384/testRdd.genotype.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/javaAC1037852165160273384/testRdd.genotype.adam/_metadata
/tmp/adamTestMvn1aEve53/javaAC1037852165160273384/testRdd.genotype.adam/_samples.avro
/tmp/adamTestMvn1aEve53/javaAC1037852165160273384/testRdd.genotype.adam/_common_metadata
/tmp/adamTestMvn1aEve53/javaAC1037852165160273384/testRdd.genotype.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/javaAC1037852165160273384/testRdd.genotype.adam/_references.avro
/tmp/adamTestMvn1aEve53/javaAC1037852165160273384/testRdd.genotype.adam/_header
/tmp/adamTestMvn1aEve53/javaAC1037852165160273384/testRdd.genotype.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite1808220779183221623
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite3303855335120315560.narrowPeak
/tmp/adamTestMvn1aEve53/TempSuite6167650813969258618.adam
/tmp/adamTestMvn1aEve53/TempSuite6167650813969258618.adam/.part-00000-dfa7e7dd-6745-46b5-85b3-00fbe930807b-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite6167650813969258618.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite6167650813969258618.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite6167650813969258618.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite6167650813969258618.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite6167650813969258618.adam/part-00000-dfa7e7dd-6745-46b5-85b3-00fbe930807b-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite6167650813969258618.adam/_samples.avro
/tmp/adamTestMvn1aEve53/TempSuite6167650813969258618.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite6167650813969258618.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite6167650813969258618.adam/_header
/tmp/adamTestMvn1aEve53/TempSuite2585661379905099765.adam
/tmp/adamTestMvn1aEve53/TempSuite2585661379905099765.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite2585661379905099765.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite2585661379905099765.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite2585661379905099765.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite2585661379905099765.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite2585661379905099765.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite2585661379905099765.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite2585661379905099765.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite2585661379905099765.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite2585661379905099765.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite2585661379905099765.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite2585661379905099765.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/TempSuite2585661379905099765.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/TempSuite2585661379905099765.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite1959685937591173193.narrowPeak
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite1959685937591173193.narrowPeak/.part-00001.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite1959685937591173193.narrowPeak/.part-00003.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite1959685937591173193.narrowPeak/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite1959685937591173193.narrowPeak/part-00003
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite1959685937591173193.narrowPeak/.part-00000.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite1959685937591173193.narrowPeak/part-00000
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite1959685937591173193.narrowPeak/part-00002
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite1959685937591173193.narrowPeak/_SUCCESS
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite1959685937591173193.narrowPeak/part-00001
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite1959685937591173193.narrowPeak/.part-00002.crc
/tmp/adamTestMvn1aEve53/TempSuite8268203359618093865
/tmp/adamTestMvn1aEve53/TempSuite5560399501811763447.adam
/tmp/adamTestMvn1aEve53/TempSuite5560399501811763447.adam/referenceName=2
/tmp/adamTestMvn1aEve53/TempSuite5560399501811763447.adam/referenceName=2/positionBin=189
/tmp/adamTestMvn1aEve53/TempSuite5560399501811763447.adam/referenceName=2/positionBin=189/part-00000-b350bec9-e546-4d12-b63d-e3cc0eb551eb.c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite5560399501811763447.adam/referenceName=2/positionBin=189/.part-00000-b350bec9-e546-4d12-b63d-e3cc0eb551eb.c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite5560399501811763447.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite5560399501811763447.adam/._partitionedByStartPos.crc
/tmp/adamTestMvn1aEve53/TempSuite5560399501811763447.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite5560399501811763447.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite5560399501811763447.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite5560399501811763447.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite5560399501811763447.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite5560399501811763447.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/TempSuite5560399501811763447.adam/referenceName=1
/tmp/adamTestMvn1aEve53/TempSuite5560399501811763447.adam/referenceName=1/positionBin=26
/tmp/adamTestMvn1aEve53/TempSuite5560399501811763447.adam/referenceName=1/positionBin=26/part-00000-b350bec9-e546-4d12-b63d-e3cc0eb551eb.c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite5560399501811763447.adam/referenceName=1/positionBin=26/.part-00000-b350bec9-e546-4d12-b63d-e3cc0eb551eb.c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite5560399501811763447.adam/referenceName=1/positionBin=240
/tmp/adamTestMvn1aEve53/TempSuite5560399501811763447.adam/referenceName=1/positionBin=240/part-00000-b350bec9-e546-4d12-b63d-e3cc0eb551eb.c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite5560399501811763447.adam/referenceName=1/positionBin=240/.part-00000-b350bec9-e546-4d12-b63d-e3cc0eb551eb.c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite5560399501811763447.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/TempSuite5560399501811763447.adam/_partitionedByStartPos
/tmp/adamTestMvn1aEve53/hg19.chrM.2bit1666166319627319578.chrM.2bit
/tmp/adamTestMvn1aEve53/TempSuite2828721102120452764
/tmp/adamTestMvn1aEve53/TempSuite5053707716233382117
/tmp/adamTestMvn1aEve53/TempSuite6746183850544526070
/tmp/adamTestMvn1aEve53/TempSuite5545008769360228853.adam
/tmp/adamTestMvn1aEve53/TempSuite5545008769360228853.adam/.part-00000-52ce4672-8019-4649-874d-21f770c9a10e-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite5545008769360228853.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite5545008769360228853.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite5545008769360228853.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite5545008769360228853.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite5545008769360228853.adam/part-00000-52ce4672-8019-4649-874d-21f770c9a10e-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite5545008769360228853.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite5545008769360228853.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite5545008769360228853.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/TempSuite5545008769360228853.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/TempSuite127294979635759299.adam
/tmp/adamTestMvn1aEve53/TempSuite127294979635759299.adam/part-00002-16f40670-7b9a-455e-9ebe-224238260721-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite127294979635759299.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite127294979635759299.adam/part-00001-16f40670-7b9a-455e-9ebe-224238260721-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite127294979635759299.adam/.part-00001-16f40670-7b9a-455e-9ebe-224238260721-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite127294979635759299.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite127294979635759299.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite127294979635759299.adam/part-00000-16f40670-7b9a-455e-9ebe-224238260721-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite127294979635759299.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite127294979635759299.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite127294979635759299.adam/.part-00002-16f40670-7b9a-455e-9ebe-224238260721-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite127294979635759299.adam/_header
/tmp/adamTestMvn1aEve53/TempSuite127294979635759299.adam/.part-00000-16f40670-7b9a-455e-9ebe-224238260721-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite4912662591403593815
/tmp/adamTestMvn1aEve53/TempSuite8659644188445065996.adam
/tmp/adamTestMvn1aEve53/TempSuite8659644188445065996.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite8659644188445065996.adam/part-r-00001.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite8659644188445065996.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite8659644188445065996.adam/part-r-00002.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite8659644188445065996.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite8659644188445065996.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite8659644188445065996.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite8659644188445065996.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite8659644188445065996.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite8659644188445065996.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite8659644188445065996.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite8659644188445065996.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite8659644188445065996.adam/_samples.avro
/tmp/adamTestMvn1aEve53/TempSuite8659644188445065996.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite8659644188445065996.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite8659644188445065996.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite8659644188445065996.adam/part-r-00003.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite8659644188445065996.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/sample_coverage.bed4264556464325031347.bed
/tmp/adamTestMvn1aEve53/TempSuite2374948989337387523
/tmp/adamTestMvn1aEve53/TempSuite2541073708956595256.adam
/tmp/adamTestMvn1aEve53/TempSuite2541073708956595256.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite2541073708956595256.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite2541073708956595256.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite2541073708956595256.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite2541073708956595256.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite2541073708956595256.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite2541073708956595256.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite2541073708956595256.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite2541073708956595256.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite2541073708956595256.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite2541073708956595256.adam/_header
/tmp/adamTestMvn1aEve53/TempSuite2541073708956595256.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite5375668627860958509
/tmp/adamTestMvn1aEve53/TempSuite1816080950452000090
/tmp/adamTestMvn1aEve53/TempSuite5839286978585410070.adam
/tmp/adamTestMvn1aEve53/TempSuite5839286978585410070.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite5839286978585410070.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite5839286978585410070.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite5839286978585410070.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite5839286978585410070.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite5839286978585410070.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite5839286978585410070.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite5839286978585410070.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite5839286978585410070.adam/_samples.avro
/tmp/adamTestMvn1aEve53/TempSuite5839286978585410070.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite5839286978585410070.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite5839286978585410070.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite5839286978585410070.adam/_header
/tmp/adamTestMvn1aEve53/TempSuite5839286978585410070.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite788586063370158535.adam
/tmp/adamTestMvn1aEve53/TempSuite788586063370158535.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite788586063370158535.adam/part-00000-8ecc79f3-c2f2-4aa1-b069-9bb0ef652080-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite788586063370158535.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite788586063370158535.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite788586063370158535.adam/.part-00000-8ecc79f3-c2f2-4aa1-b069-9bb0ef652080-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite788586063370158535.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite788586063370158535.adam/_samples.avro
/tmp/adamTestMvn1aEve53/TempSuite788586063370158535.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite788586063370158535.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite788586063370158535.adam/_header
/tmp/adamTestMvn1aEve53/random.vcf4802399667157602017.vcf
/tmp/adamTestMvn1aEve53/TempSuite8513845392311677374.adam
/tmp/adamTestMvn1aEve53/TempSuite8513845392311677374.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite8513845392311677374.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite8513845392311677374.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite8513845392311677374.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite8513845392311677374.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite8513845392311677374.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite8513845392311677374.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite8513845392311677374.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite8513845392311677374.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite8513845392311677374.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6839487989705821996
/tmp/adamTestMvn1aEve53/TempSuite7790786004779680799.adam
/tmp/adamTestMvn1aEve53/TempSuite7790786004779680799.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite7790786004779680799.adam/part-00001-b5ed5379-841c-4c5f-b2f7-1c755f96f243-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite7790786004779680799.adam/part-00000-b5ed5379-841c-4c5f-b2f7-1c755f96f243-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite7790786004779680799.adam/.part-00001-b5ed5379-841c-4c5f-b2f7-1c755f96f243-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite7790786004779680799.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite7790786004779680799.adam/part-00002-b5ed5379-841c-4c5f-b2f7-1c755f96f243-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite7790786004779680799.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite7790786004779680799.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite7790786004779680799.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite7790786004779680799.adam/.part-00000-b5ed5379-841c-4c5f-b2f7-1c755f96f243-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite7790786004779680799.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite7790786004779680799.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/TempSuite7790786004779680799.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/TempSuite7790786004779680799.adam/.part-00002-b5ed5379-841c-4c5f-b2f7-1c755f96f243-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite7062198873371886705
/tmp/adamTestMvn1aEve53/TempSuite5839286978585410070
/tmp/adamTestMvn1aEve53/TempSuite8664438933694805564
/tmp/adamTestMvn1aEve53/.TempSuite5405187371436656470_1.fq.crc
/tmp/adamTestMvn1aEve53/TempSuite2791074731507162860
/tmp/adamTestMvn1aEve53/TempSuite7904185201389183684.adam
/tmp/adamTestMvn1aEve53/TempSuite7904185201389183684.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite7904185201389183684.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite7904185201389183684.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite7904185201389183684.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite7904185201389183684.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite7904185201389183684.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite7904185201389183684.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite7904185201389183684.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite7904185201389183684.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite7904185201389183684.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite7904185201389183684.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite7904185201389183684.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/TempSuite7904185201389183684.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/TempSuite7904185201389183684.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/sample_coverage.bed3337822787963397525.bed
/tmp/adamTestMvn1aEve53/SliceDatasetSuite4512697805886669886.fasta
/tmp/adamTestMvn1aEve53/SliceDatasetSuite4512697805886669886.fasta/.part-00001.crc
/tmp/adamTestMvn1aEve53/SliceDatasetSuite4512697805886669886.fasta/.part-00003.crc
/tmp/adamTestMvn1aEve53/SliceDatasetSuite4512697805886669886.fasta/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/SliceDatasetSuite4512697805886669886.fasta/part-00003
/tmp/adamTestMvn1aEve53/SliceDatasetSuite4512697805886669886.fasta/.part-00000.crc
/tmp/adamTestMvn1aEve53/SliceDatasetSuite4512697805886669886.fasta/part-00000
/tmp/adamTestMvn1aEve53/SliceDatasetSuite4512697805886669886.fasta/part-00002
/tmp/adamTestMvn1aEve53/SliceDatasetSuite4512697805886669886.fasta/_SUCCESS
/tmp/adamTestMvn1aEve53/SliceDatasetSuite4512697805886669886.fasta/part-00001
/tmp/adamTestMvn1aEve53/SliceDatasetSuite4512697805886669886.fasta/.part-00002.crc
/tmp/adamTestMvn1aEve53/TempSuite2374948989337387523.adam
/tmp/adamTestMvn1aEve53/TempSuite2374948989337387523.adam/.part-00001-cec0f182-c3ce-4493-8ea0-2b8ffafa8fde-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite2374948989337387523.adam/part-00002-cec0f182-c3ce-4493-8ea0-2b8ffafa8fde-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite2374948989337387523.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite2374948989337387523.adam/part-00001-cec0f182-c3ce-4493-8ea0-2b8ffafa8fde-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite2374948989337387523.adam/.part-00000-cec0f182-c3ce-4493-8ea0-2b8ffafa8fde-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite2374948989337387523.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite2374948989337387523.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite2374948989337387523.adam/.part-00002-cec0f182-c3ce-4493-8ea0-2b8ffafa8fde-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite2374948989337387523.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite2374948989337387523.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite2374948989337387523.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite2374948989337387523.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/TempSuite2374948989337387523.adam/part-00000-cec0f182-c3ce-4493-8ea0-2b8ffafa8fde-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite2374948989337387523.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite8968880501625550624.adam
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite8968880501625550624.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite8968880501625550624.adam/part-r-00001.gz.parquet
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite8968880501625550624.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite8968880501625550624.adam/part-r-00002.gz.parquet
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite8968880501625550624.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite8968880501625550624.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite8968880501625550624.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite8968880501625550624.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite8968880501625550624.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite8968880501625550624.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite8968880501625550624.adam/_metadata
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite8968880501625550624.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite8968880501625550624.adam/_common_metadata
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite8968880501625550624.adam/_references.avro
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite8968880501625550624.adam/part-r-00003.gz.parquet
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite8968880501625550624.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/SliceDatasetSuite3708153228324631881.adam
/tmp/adamTestMvn1aEve53/SliceDatasetSuite3708153228324631881.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvn1aEve53/SliceDatasetSuite3708153228324631881.adam/part-r-00001.gz.parquet
/tmp/adamTestMvn1aEve53/SliceDatasetSuite3708153228324631881.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/SliceDatasetSuite3708153228324631881.adam/part-r-00002.gz.parquet
/tmp/adamTestMvn1aEve53/SliceDatasetSuite3708153228324631881.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/SliceDatasetSuite3708153228324631881.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/SliceDatasetSuite3708153228324631881.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/SliceDatasetSuite3708153228324631881.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/SliceDatasetSuite3708153228324631881.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/SliceDatasetSuite3708153228324631881.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvn1aEve53/SliceDatasetSuite3708153228324631881.adam/_metadata
/tmp/adamTestMvn1aEve53/SliceDatasetSuite3708153228324631881.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvn1aEve53/SliceDatasetSuite3708153228324631881.adam/_common_metadata
/tmp/adamTestMvn1aEve53/SliceDatasetSuite3708153228324631881.adam/_references.avro
/tmp/adamTestMvn1aEve53/SliceDatasetSuite3708153228324631881.adam/part-r-00003.gz.parquet
/tmp/adamTestMvn1aEve53/SliceDatasetSuite3708153228324631881.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite6908119525554691966.adam
/tmp/adamTestMvn1aEve53/TempSuite6908119525554691966.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite6908119525554691966.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite6908119525554691966.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite6908119525554691966.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite6908119525554691966.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite6908119525554691966.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite6908119525554691966.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite6908119525554691966.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite6908119525554691966.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite6908119525554691966.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite6908119525554691966.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite6908119525554691966.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/TempSuite6908119525554691966.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/TempSuite6908119525554691966.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/artificial.sam8090253125985608350.sam
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite5965278415618236036.adam
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite5965278415618236036.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite5965278415618236036.adam/part-r-00001.gz.parquet
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite5965278415618236036.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite5965278415618236036.adam/part-r-00002.gz.parquet
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite5965278415618236036.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite5965278415618236036.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite5965278415618236036.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite5965278415618236036.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite5965278415618236036.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite5965278415618236036.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite5965278415618236036.adam/_metadata
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite5965278415618236036.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite5965278415618236036.adam/_common_metadata
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite5965278415618236036.adam/_references.avro
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite5965278415618236036.adam/part-r-00003.gz.parquet
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite5965278415618236036.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite9155445969933055215.adam
/tmp/adamTestMvn1aEve53/TempSuite9155445969933055215.adam/part-00000-4ea08832-8fc8-4170-9e06-52caab9b960c-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite9155445969933055215.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite9155445969933055215.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite9155445969933055215.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite9155445969933055215.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite9155445969933055215.adam/.part-00000-4ea08832-8fc8-4170-9e06-52caab9b960c-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite9155445969933055215.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite9155445969933055215.adam/_header
/tmp/adamTestMvn1aEve53/TempSuite4517956743791775297
/tmp/adamTestMvn1aEve53/TempSuite2402903130550303326.adam
/tmp/adamTestMvn1aEve53/TempSuite2402903130550303326.adam/part-00000-8839dbf0-32cb-4306-ba81-1914edde7fb4-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite2402903130550303326.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite2402903130550303326.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite2402903130550303326.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite2402903130550303326.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite2402903130550303326.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite2402903130550303326.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite2402903130550303326.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/TempSuite2402903130550303326.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/TempSuite2402903130550303326.adam/.part-00000-8839dbf0-32cb-4306-ba81-1914edde7fb4-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite1857648626317962572
/tmp/adamTestMvn1aEve53/TempSuite7359688609875524827
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite414965241092566071
/tmp/adamTestMvn1aEve53/noqual6230964391364126991
/tmp/adamTestMvn1aEve53/noqual6230964391364126991/noqualB.fastq
/tmp/adamTestMvn1aEve53/noqual6230964391364126991/noqualB.fastq/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/noqual6230964391364126991/noqualB.fastq/.part-00000.crc
/tmp/adamTestMvn1aEve53/noqual6230964391364126991/noqualB.fastq/part-00000
/tmp/adamTestMvn1aEve53/noqual6230964391364126991/noqualB.fastq/_SUCCESS
/tmp/adamTestMvn1aEve53/noqual6230964391364126991/noqualA.sam
/tmp/adamTestMvn1aEve53/noqual6230964391364126991/noqualA.sam/part-r-00000.sam
/tmp/adamTestMvn1aEve53/noqual6230964391364126991/noqualA.sam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/noqual6230964391364126991/noqualA.sam/_SUCCESS
/tmp/adamTestMvn1aEve53/noqual6230964391364126991/noqualA.sam/.part-r-00000.sam.crc
/tmp/adamTestMvn1aEve53/TempSuite1697440829626619237.adam
/tmp/adamTestMvn1aEve53/TempSuite1697440829626619237.adam/referenceName=13
/tmp/adamTestMvn1aEve53/TempSuite1697440829626619237.adam/referenceName=13/positionBin=0
/tmp/adamTestMvn1aEve53/TempSuite1697440829626619237.adam/referenceName=13/positionBin=0/part-00000-1957e776-0820-4517-8f3d-6847c61dea35.c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite1697440829626619237.adam/referenceName=13/positionBin=0/.part-00000-1957e776-0820-4517-8f3d-6847c61dea35.c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite1697440829626619237.adam/referenceName=2
/tmp/adamTestMvn1aEve53/TempSuite1697440829626619237.adam/referenceName=2/positionBin=0
/tmp/adamTestMvn1aEve53/TempSuite1697440829626619237.adam/referenceName=2/positionBin=0/part-00000-1957e776-0820-4517-8f3d-6847c61dea35.c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite1697440829626619237.adam/referenceName=2/positionBin=0/.part-00000-1957e776-0820-4517-8f3d-6847c61dea35.c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite1697440829626619237.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite1697440829626619237.adam/._partitionedByStartPos.crc
/tmp/adamTestMvn1aEve53/TempSuite1697440829626619237.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite1697440829626619237.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite1697440829626619237.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite1697440829626619237.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite1697440829626619237.adam/referenceName=1
/tmp/adamTestMvn1aEve53/TempSuite1697440829626619237.adam/referenceName=1/positionBin=0
/tmp/adamTestMvn1aEve53/TempSuite1697440829626619237.adam/referenceName=1/positionBin=0/part-00000-1957e776-0820-4517-8f3d-6847c61dea35.c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite1697440829626619237.adam/referenceName=1/positionBin=0/.part-00000-1957e776-0820-4517-8f3d-6847c61dea35.c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite1697440829626619237.adam/_header
/tmp/adamTestMvn1aEve53/TempSuite1697440829626619237.adam/_partitionedByStartPos
/tmp/adamTestMvn1aEve53/.SequenceDatasetSuite7836445841974959216.fasta.crc
/tmp/adamTestMvn1aEve53/TempSuite6608058838802732133
/tmp/adamTestMvn1aEve53/2930105366693274174
/tmp/adamTestMvn1aEve53/2930105366693274174/binned.adam
/tmp/adamTestMvn1aEve53/2930105366693274174/binned.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/2930105366693274174/binned.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/2930105366693274174/binned.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/2930105366693274174/binned.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/2930105366693274174/binned.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/2930105366693274174/binned.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/2930105366693274174/binned.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/2930105366693274174/binned.adam/_metadata
/tmp/adamTestMvn1aEve53/2930105366693274174/binned.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/2930105366693274174/binned.adam/_common_metadata
/tmp/adamTestMvn1aEve53/2930105366693274174/binned.adam/_references.avro
/tmp/adamTestMvn1aEve53/2930105366693274174/binned.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/2930105366693274174/binned.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/2930105366693274174/binned.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite8358875628545310369.narrowPeak
/tmp/adamTestMvn1aEve53/TempSuite5058381613513422206
/tmp/adamTestMvn1aEve53/TempSuite4238539854885668860.fq
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2115577474726668409
/tmp/adamTestMvn1aEve53/TempSuite9016103903935194444.adam
/tmp/adamTestMvn1aEve53/TempSuite9016103903935194444.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite9016103903935194444.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite9016103903935194444.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite9016103903935194444.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite9016103903935194444.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite9016103903935194444.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite9016103903935194444.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite9016103903935194444.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite9016103903935194444.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite9016103903935194444.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite5405187371436656470
/tmp/adamTestMvn1aEve53/TempSuite773677557114680169
/tmp/adamTestMvn1aEve53/TempSuite5468846048777603860.bed
/tmp/adamTestMvn1aEve53/TempSuite5468846048777603860.bed/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite5468846048777603860.bed/.part-00000.crc
/tmp/adamTestMvn1aEve53/TempSuite5468846048777603860.bed/part-00000
/tmp/adamTestMvn1aEve53/TempSuite5468846048777603860.bed/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite4839935895614070288.adam
/tmp/adamTestMvn1aEve53/TempSuite4839935895614070288.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite4839935895614070288.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite4839935895614070288.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite4839935895614070288.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite4839935895614070288.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite4839935895614070288.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite4839935895614070288.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite4839935895614070288.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite4839935895614070288.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite4839935895614070288.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite4839935895614070288.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite4839935895614070288.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/TempSuite4839935895614070288.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/TempSuite4839935895614070288.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite4273693618453294929.bed
/tmp/adamTestMvn1aEve53/TempSuite4273693618453294929.bed/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite4273693618453294929.bed/.part-00000.crc
/tmp/adamTestMvn1aEve53/TempSuite4273693618453294929.bed/part-00000
/tmp/adamTestMvn1aEve53/TempSuite4273693618453294929.bed/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite4834401038464786530
/tmp/adamTestMvn1aEve53/TempSuite2684707761092189059
/tmp/adamTestMvn1aEve53/4217691702087080676
/tmp/adamTestMvn1aEve53/4217691702087080676/genotypes.adam
/tmp/adamTestMvn1aEve53/4217691702087080676/genotypes.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/4217691702087080676/genotypes.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/4217691702087080676/genotypes.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/4217691702087080676/genotypes.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/4217691702087080676/genotypes.adam/._header.crc
/tmp/adamTestMvn1aEve53/4217691702087080676/genotypes.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/4217691702087080676/genotypes.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/4217691702087080676/genotypes.adam/_metadata
/tmp/adamTestMvn1aEve53/4217691702087080676/genotypes.adam/_samples.avro
/tmp/adamTestMvn1aEve53/4217691702087080676/genotypes.adam/_common_metadata
/tmp/adamTestMvn1aEve53/4217691702087080676/genotypes.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/4217691702087080676/genotypes.adam/_references.avro
/tmp/adamTestMvn1aEve53/4217691702087080676/genotypes.adam/_header
/tmp/adamTestMvn1aEve53/4217691702087080676/genotypes.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite2456098511292702094.adam
/tmp/adamTestMvn1aEve53/TempSuite2456098511292702094.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite2456098511292702094.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite2456098511292702094.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite2456098511292702094.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite2456098511292702094.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite2456098511292702094.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite2456098511292702094.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite2456098511292702094.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite2456098511292702094.adam/_samples.avro
/tmp/adamTestMvn1aEve53/TempSuite2456098511292702094.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite2456098511292702094.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite2456098511292702094.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite2456098511292702094.adam/_header
/tmp/adamTestMvn1aEve53/TempSuite2456098511292702094.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite5375668627860958509.bed
/tmp/adamTestMvn1aEve53/TempSuite5375668627860958509.bed/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite5375668627860958509.bed/.part-00000.crc
/tmp/adamTestMvn1aEve53/TempSuite5375668627860958509.bed/part-00000
/tmp/adamTestMvn1aEve53/TempSuite5375668627860958509.bed/_SUCCESS
/tmp/adamTestMvn1aEve53/ReadDatasetSuite3004132319832431856.adam
/tmp/adamTestMvn1aEve53/ReadDatasetSuite3004132319832431856.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvn1aEve53/ReadDatasetSuite3004132319832431856.adam/part-r-00001.gz.parquet
/tmp/adamTestMvn1aEve53/ReadDatasetSuite3004132319832431856.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/ReadDatasetSuite3004132319832431856.adam/part-r-00002.gz.parquet
/tmp/adamTestMvn1aEve53/ReadDatasetSuite3004132319832431856.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/ReadDatasetSuite3004132319832431856.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/ReadDatasetSuite3004132319832431856.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/ReadDatasetSuite3004132319832431856.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/ReadDatasetSuite3004132319832431856.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/ReadDatasetSuite3004132319832431856.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvn1aEve53/ReadDatasetSuite3004132319832431856.adam/_metadata
/tmp/adamTestMvn1aEve53/ReadDatasetSuite3004132319832431856.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvn1aEve53/ReadDatasetSuite3004132319832431856.adam/_common_metadata
/tmp/adamTestMvn1aEve53/ReadDatasetSuite3004132319832431856.adam/_references.avro
/tmp/adamTestMvn1aEve53/ReadDatasetSuite3004132319832431856.adam/part-r-00003.gz.parquet
/tmp/adamTestMvn1aEve53/ReadDatasetSuite3004132319832431856.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/.FeatureDatasetFunctionsSuite2019859250411959994.interval_list.crc
/tmp/adamTestMvn1aEve53/TempSuite5306804745591044704.adam
/tmp/adamTestMvn1aEve53/TempSuite5306804745591044704.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite5306804745591044704.adam/part-r-00001.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite5306804745591044704.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite5306804745591044704.adam/part-r-00002.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite5306804745591044704.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite5306804745591044704.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite5306804745591044704.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite5306804745591044704.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite5306804745591044704.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite5306804745591044704.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite5306804745591044704.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite5306804745591044704.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite5306804745591044704.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite5306804745591044704.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite5306804745591044704.adam/part-r-00003.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite5306804745591044704.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/javaAC3483939856015019076
/tmp/adamTestMvn1aEve53/javaAC3483939856015019076/testRdd.read.adam
/tmp/adamTestMvn1aEve53/javaAC3483939856015019076/testRdd.read.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/javaAC3483939856015019076/testRdd.read.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/javaAC3483939856015019076/testRdd.read.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/javaAC3483939856015019076/testRdd.read.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/javaAC3483939856015019076/testRdd.read.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/javaAC3483939856015019076/testRdd.read.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/javaAC3483939856015019076/testRdd.read.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/javaAC3483939856015019076/testRdd.read.adam/_metadata
/tmp/adamTestMvn1aEve53/javaAC3483939856015019076/testRdd.read.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/javaAC3483939856015019076/testRdd.read.adam/_common_metadata
/tmp/adamTestMvn1aEve53/javaAC3483939856015019076/testRdd.read.adam/_references.avro
/tmp/adamTestMvn1aEve53/javaAC3483939856015019076/testRdd.read.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/javaAC3483939856015019076/testRdd.read.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/javaAC3483939856015019076/testRdd.read.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/.TempSuite8664438933694805564_1.fq.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2281914338995368222
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite3852120267839995307
/tmp/adamTestMvn1aEve53/TempSuite6235267056489680102
/tmp/adamTestMvn1aEve53/TempSuite3132425633330768589.adam
/tmp/adamTestMvn1aEve53/TempSuite3132425633330768589.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite3132425633330768589.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite3132425633330768589.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite3132425633330768589.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite3132425633330768589.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite3132425633330768589.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite3132425633330768589.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite3132425633330768589.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite3132425633330768589.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite3132425633330768589.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite5070002804702718014
/tmp/adamTestMvn1aEve53/TempSuite3686433698019660348
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6456870594511948826.gff3
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6456870594511948826.gff3/.part-00001.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6456870594511948826.gff3/.part-00003.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6456870594511948826.gff3/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6456870594511948826.gff3/part-00003
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6456870594511948826.gff3/.part-00000.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6456870594511948826.gff3/part-00000
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6456870594511948826.gff3/part-00002
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6456870594511948826.gff3/_SUCCESS
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6456870594511948826.gff3/part-00001
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6456870594511948826.gff3/.part-00002.crc
/tmp/adamTestMvn1aEve53/752917564156470824
/tmp/adamTestMvn1aEve53/752917564156470824/unordered.sam
/tmp/adamTestMvn1aEve53/752917564156470824/.unordered.sam.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite8203956352949010156
/tmp/adamTestMvn1aEve53/artificial.cram1201758294064223230.cram
/tmp/adamTestMvn1aEve53/TempSuite4574969928926729962.adam
/tmp/adamTestMvn1aEve53/TempSuite4574969928926729962.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite4574969928926729962.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite4574969928926729962.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite4574969928926729962.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite4574969928926729962.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite4574969928926729962.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite4574969928926729962.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite4574969928926729962.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite4574969928926729962.adam/_samples.avro
/tmp/adamTestMvn1aEve53/TempSuite4574969928926729962.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite4574969928926729962.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite4574969928926729962.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite4574969928926729962.adam/_header
/tmp/adamTestMvn1aEve53/TempSuite4574969928926729962.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite6219713420457473689
/tmp/adamTestMvn1aEve53/TempSuite986235147008715068
/tmp/adamTestMvn1aEve53/TempSuite9137094041378289854
/tmp/adamTestMvn1aEve53/TempSuite881780151206888408.adam
/tmp/adamTestMvn1aEve53/TempSuite881780151206888408.adam/.part-00000-11541f69-ebdf-47a5-92bd-41baa3125874-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite881780151206888408.adam/.part-00002-11541f69-ebdf-47a5-92bd-41baa3125874-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite881780151206888408.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite881780151206888408.adam/part-00000-11541f69-ebdf-47a5-92bd-41baa3125874-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite881780151206888408.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite881780151206888408.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite881780151206888408.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite881780151206888408.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite881780151206888408.adam/part-00002-11541f69-ebdf-47a5-92bd-41baa3125874-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite881780151206888408.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite881780151206888408.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/TempSuite881780151206888408.adam/.part-00001-11541f69-ebdf-47a5-92bd-41baa3125874-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite881780151206888408.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/TempSuite881780151206888408.adam/part-00001-11541f69-ebdf-47a5-92bd-41baa3125874-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite4726639714627329479
/tmp/adamTestMvn1aEve53/6085370445936277893
/tmp/adamTestMvn1aEve53/6085370445936277893/sorted.sam
/tmp/adamTestMvn1aEve53/6085370445936277893/.sorted.sam.crc
/tmp/adamTestMvn1aEve53/TempSuite3779211249566026278
/tmp/adamTestMvn1aEve53/.SequenceDatasetSuite8973757927970054740.fasta.crc
/tmp/adamTestMvn1aEve53/TempSuite7582122391933728981.adam
/tmp/adamTestMvn1aEve53/TempSuite7582122391933728981.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite7582122391933728981.adam/part-00000-e8f794c8-4e3e-4e5c-a06e-917f560d8f9c-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite7582122391933728981.adam/.part-00000-e8f794c8-4e3e-4e5c-a06e-917f560d8f9c-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite7582122391933728981.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite7582122391933728981.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite7582122391933728981.adam/_references.avro
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite7429771821504448566
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6427644252311693168.interval_list
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6427644252311693168.interval_list/.part-00001.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6427644252311693168.interval_list/.part-00003.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6427644252311693168.interval_list/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6427644252311693168.interval_list/part-00003
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6427644252311693168.interval_list/.part-00000.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6427644252311693168.interval_list/part-00000
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6427644252311693168.interval_list/part-00002
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6427644252311693168.interval_list/_SUCCESS
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6427644252311693168.interval_list/part-00001
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6427644252311693168.interval_list/.part-00002.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite956834639593105906
/tmp/adamTestMvn1aEve53/TempSuite7641710820339056317
/tmp/adamTestMvn1aEve53/TempSuite16962379450477273
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite4396471450038426932
/tmp/adamTestMvn1aEve53/javaAC1308049040872649288
/tmp/adamTestMvn1aEve53/javaAC1308049040872649288/testRdd.sequences.adam
/tmp/adamTestMvn1aEve53/javaAC1308049040872649288/testRdd.sequences.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/javaAC1308049040872649288/testRdd.sequences.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/javaAC1308049040872649288/testRdd.sequences.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/javaAC1308049040872649288/testRdd.sequences.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/javaAC1308049040872649288/testRdd.sequences.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/javaAC1308049040872649288/testRdd.sequences.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/javaAC1308049040872649288/testRdd.sequences.adam/_metadata
/tmp/adamTestMvn1aEve53/javaAC1308049040872649288/testRdd.sequences.adam/_common_metadata
/tmp/adamTestMvn1aEve53/javaAC1308049040872649288/testRdd.sequences.adam/_references.avro
/tmp/adamTestMvn1aEve53/javaAC1308049040872649288/testRdd.sequences.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/SliceDatasetSuite7105940192152405020.adam
/tmp/adamTestMvn1aEve53/SliceDatasetSuite7105940192152405020.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvn1aEve53/SliceDatasetSuite7105940192152405020.adam/part-r-00001.gz.parquet
/tmp/adamTestMvn1aEve53/SliceDatasetSuite7105940192152405020.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/SliceDatasetSuite7105940192152405020.adam/part-r-00002.gz.parquet
/tmp/adamTestMvn1aEve53/SliceDatasetSuite7105940192152405020.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/SliceDatasetSuite7105940192152405020.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/SliceDatasetSuite7105940192152405020.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/SliceDatasetSuite7105940192152405020.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/SliceDatasetSuite7105940192152405020.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/SliceDatasetSuite7105940192152405020.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvn1aEve53/SliceDatasetSuite7105940192152405020.adam/_metadata
/tmp/adamTestMvn1aEve53/SliceDatasetSuite7105940192152405020.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvn1aEve53/SliceDatasetSuite7105940192152405020.adam/_common_metadata
/tmp/adamTestMvn1aEve53/SliceDatasetSuite7105940192152405020.adam/_references.avro
/tmp/adamTestMvn1aEve53/SliceDatasetSuite7105940192152405020.adam/part-r-00003.gz.parquet
/tmp/adamTestMvn1aEve53/SliceDatasetSuite7105940192152405020.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite5306804745591044704
/tmp/adamTestMvn1aEve53/gencode.v7.annotation.trunc10.bed3625113462050861569.v7.annotation.trunc10.bed
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2006183066780262254
/tmp/adamTestMvn1aEve53/TempSuite1393662803655003343.adam
/tmp/adamTestMvn1aEve53/TempSuite1393662803655003343.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite1393662803655003343.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite1393662803655003343.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite1393662803655003343.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite1393662803655003343.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite1393662803655003343.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite1393662803655003343.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite1393662803655003343.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite1393662803655003343.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite1393662803655003343.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite1393662803655003343.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite1393662803655003343.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/TempSuite1393662803655003343.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/TempSuite1393662803655003343.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite8515962790465681135
/tmp/adamTestMvn1aEve53/TempSuite7672267946039590419
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2927422353197026634.bed
/tmp/adamTestMvn1aEve53/TempSuite2271119968002188919
/tmp/adamTestMvn1aEve53/TempSuite1440927688619027564
/tmp/adamTestMvn1aEve53/TempSuite3686433698019660348.adam
/tmp/adamTestMvn1aEve53/TempSuite3686433698019660348.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite3686433698019660348.adam/.part-00000-a38c65c2-4f84-442c-863f-eba343b1c41c-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite3686433698019660348.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite3686433698019660348.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite3686433698019660348.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite3686433698019660348.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite3686433698019660348.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite3686433698019660348.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/TempSuite3686433698019660348.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/TempSuite3686433698019660348.adam/part-00000-a38c65c2-4f84-442c-863f-eba343b1c41c-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite8138553385444146667
/tmp/adamTestMvn1aEve53/TempSuite6369085887598243136.sam
/tmp/adamTestMvn1aEve53/TempSuite6369085887598243136.sam/part-r-00000.sam
/tmp/adamTestMvn1aEve53/TempSuite6369085887598243136.sam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite6369085887598243136.sam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite6369085887598243136.sam/.part-r-00000.sam.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6075293857759281125
/tmp/adamTestMvn1aEve53/SliceDatasetSuite4512697805886669886
/tmp/adamTestMvn1aEve53/TempSuite2828721102120452764.bam
/tmp/adamTestMvn1aEve53/TempSuite3469962871532329877.bed
/tmp/adamTestMvn1aEve53/TempSuite3469962871532329877.bed/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite3469962871532329877.bed/.part-00000.crc
/tmp/adamTestMvn1aEve53/TempSuite3469962871532329877.bed/part-00000
/tmp/adamTestMvn1aEve53/TempSuite3469962871532329877.bed/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite7359688609875524827.adam
/tmp/adamTestMvn1aEve53/TempSuite7359688609875524827.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite7359688609875524827.adam/part-r-00001.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite7359688609875524827.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite7359688609875524827.adam/part-r-00002.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite7359688609875524827.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite7359688609875524827.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite7359688609875524827.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite7359688609875524827.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite7359688609875524827.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite7359688609875524827.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite7359688609875524827.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite7359688609875524827.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite7359688609875524827.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite7359688609875524827.adam/_samples.avro
/tmp/adamTestMvn1aEve53/TempSuite7359688609875524827.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite7359688609875524827.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite7359688609875524827.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite7359688609875524827.adam/part-r-00003.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite7359688609875524827.adam/_header
/tmp/adamTestMvn1aEve53/TempSuite7359688609875524827.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite6589874744829215841
/tmp/adamTestMvn1aEve53/TempSuite6608058838802732133.bed
/tmp/adamTestMvn1aEve53/TempSuite6608058838802732133.bed/.part-00001.crc
/tmp/adamTestMvn1aEve53/TempSuite6608058838802732133.bed/.part-00003.crc
/tmp/adamTestMvn1aEve53/TempSuite6608058838802732133.bed/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite6608058838802732133.bed/part-00003
/tmp/adamTestMvn1aEve53/TempSuite6608058838802732133.bed/.part-00000.crc
/tmp/adamTestMvn1aEve53/TempSuite6608058838802732133.bed/part-00000
/tmp/adamTestMvn1aEve53/TempSuite6608058838802732133.bed/part-00002
/tmp/adamTestMvn1aEve53/TempSuite6608058838802732133.bed/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite6608058838802732133.bed/part-00001
/tmp/adamTestMvn1aEve53/TempSuite6608058838802732133.bed/.part-00002.crc
/tmp/adamTestMvn1aEve53/TempSuite7292125524155588931
/tmp/adamTestMvn1aEve53/TempSuite4834401038464786530.bed
/tmp/adamTestMvn1aEve53/TempSuite4834401038464786530.bed/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite4834401038464786530.bed/.part-00000.crc
/tmp/adamTestMvn1aEve53/TempSuite4834401038464786530.bed/part-00000
/tmp/adamTestMvn1aEve53/TempSuite4834401038464786530.bed/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite1617844762640726459
/tmp/adamTestMvn1aEve53/TempSuite320622463987252133.adam
/tmp/adamTestMvn1aEve53/TempSuite320622463987252133.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite320622463987252133.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite320622463987252133.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite320622463987252133.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite320622463987252133.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite320622463987252133.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite320622463987252133.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite320622463987252133.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite320622463987252133.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite320622463987252133.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite320622463987252133.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite320622463987252133.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/TempSuite320622463987252133.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/TempSuite320622463987252133.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/unordered.sam251423553505081586.sam
/tmp/adamTestMvn1aEve53/8201888365706869814
/tmp/adamTestMvn1aEve53/8201888365706869814/tag.sam
/tmp/adamTestMvn1aEve53/8201888365706869814/.tag.sam.crc
/tmp/adamTestMvn1aEve53/SliceDatasetSuite1430142994745319952.fasta
/tmp/adamTestMvn1aEve53/SliceDatasetSuite1430142994745319952.fasta/.part-00001.crc
/tmp/adamTestMvn1aEve53/SliceDatasetSuite1430142994745319952.fasta/.part-00003.crc
/tmp/adamTestMvn1aEve53/SliceDatasetSuite1430142994745319952.fasta/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/SliceDatasetSuite1430142994745319952.fasta/part-00003
/tmp/adamTestMvn1aEve53/SliceDatasetSuite1430142994745319952.fasta/.part-00000.crc
/tmp/adamTestMvn1aEve53/SliceDatasetSuite1430142994745319952.fasta/part-00000
/tmp/adamTestMvn1aEve53/SliceDatasetSuite1430142994745319952.fasta/part-00002
/tmp/adamTestMvn1aEve53/SliceDatasetSuite1430142994745319952.fasta/_SUCCESS
/tmp/adamTestMvn1aEve53/SliceDatasetSuite1430142994745319952.fasta/part-00001
/tmp/adamTestMvn1aEve53/SliceDatasetSuite1430142994745319952.fasta/.part-00002.crc
/tmp/adamTestMvn1aEve53/TempSuite3386759355009636835
/tmp/adamTestMvn1aEve53/TempSuite7630682249429408962
/tmp/adamTestMvn1aEve53/SliceDatasetSuite7105940192152405020
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite486488982734603353
/tmp/adamTestMvn1aEve53/TempSuite3328401364509105852
/tmp/adamTestMvn1aEve53/TempSuite2744398513530491255
/tmp/adamTestMvn1aEve53/TempSuite7752347124426237619.adam
/tmp/adamTestMvn1aEve53/TempSuite7752347124426237619.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite7752347124426237619.adam/part-00000-9a5c6143-bbd4-425c-b7c4-bd4511036b81-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite7752347124426237619.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite7752347124426237619.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite7752347124426237619.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite7752347124426237619.adam/_samples.avro
/tmp/adamTestMvn1aEve53/TempSuite7752347124426237619.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite7752347124426237619.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite7752347124426237619.adam/_header
/tmp/adamTestMvn1aEve53/TempSuite7752347124426237619.adam/.part-00000-9a5c6143-bbd4-425c-b7c4-bd4511036b81-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/ordered.sam4781733948168242563.sam
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2281914338995368222.narrowPeak
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2281914338995368222.narrowPeak/.part-00001.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2281914338995368222.narrowPeak/.part-00003.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2281914338995368222.narrowPeak/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2281914338995368222.narrowPeak/part-00003
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2281914338995368222.narrowPeak/.part-00000.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2281914338995368222.narrowPeak/part-00000
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2281914338995368222.narrowPeak/part-00002
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2281914338995368222.narrowPeak/_SUCCESS
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2281914338995368222.narrowPeak/part-00001
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2281914338995368222.narrowPeak/.part-00002.crc
/tmp/adamTestMvn1aEve53/TempSuite4063325845851802261
/tmp/adamTestMvn1aEve53/SliceDatasetSuite6033297313055039973.adam
/tmp/adamTestMvn1aEve53/SliceDatasetSuite6033297313055039973.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvn1aEve53/SliceDatasetSuite6033297313055039973.adam/part-r-00001.gz.parquet
/tmp/adamTestMvn1aEve53/SliceDatasetSuite6033297313055039973.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/SliceDatasetSuite6033297313055039973.adam/part-r-00002.gz.parquet
/tmp/adamTestMvn1aEve53/SliceDatasetSuite6033297313055039973.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/SliceDatasetSuite6033297313055039973.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/SliceDatasetSuite6033297313055039973.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/SliceDatasetSuite6033297313055039973.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/SliceDatasetSuite6033297313055039973.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/SliceDatasetSuite6033297313055039973.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvn1aEve53/SliceDatasetSuite6033297313055039973.adam/_metadata
/tmp/adamTestMvn1aEve53/SliceDatasetSuite6033297313055039973.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvn1aEve53/SliceDatasetSuite6033297313055039973.adam/_common_metadata
/tmp/adamTestMvn1aEve53/SliceDatasetSuite6033297313055039973.adam/_references.avro
/tmp/adamTestMvn1aEve53/SliceDatasetSuite6033297313055039973.adam/part-r-00003.gz.parquet
/tmp/adamTestMvn1aEve53/SliceDatasetSuite6033297313055039973.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/8970584095537819037
/tmp/adamTestMvn1aEve53/8970584095537819037/predicate.2.adam
/tmp/adamTestMvn1aEve53/8970584095537819037/predicate.2.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/8970584095537819037/predicate.2.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/8970584095537819037/predicate.2.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/8970584095537819037/predicate.2.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/8970584095537819037/predicate.2.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/8970584095537819037/predicate.2.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/8970584095537819037/predicate.2.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/8970584095537819037/predicate.2.adam/_metadata
/tmp/adamTestMvn1aEve53/8970584095537819037/predicate.2.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/8970584095537819037/predicate.2.adam/_common_metadata
/tmp/adamTestMvn1aEve53/8970584095537819037/predicate.2.adam/_references.avro
/tmp/adamTestMvn1aEve53/8970584095537819037/predicate.2.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/8970584095537819037/predicate.2.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/8970584095537819037/predicate.2.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/5128074106303924520
/tmp/adamTestMvn1aEve53/5128074106303924520/unordered.sam
/tmp/adamTestMvn1aEve53/5128074106303924520/.unordered.sam.crc
/tmp/adamTestMvn1aEve53/TempSuite6239978590150247134
/tmp/adamTestMvn1aEve53/TempSuite6704839420153577974
/tmp/adamTestMvn1aEve53/TempSuite2432798508555795
/tmp/adamTestMvn1aEve53/TempSuite2743448430350111530.2.adam
/tmp/adamTestMvn1aEve53/TempSuite2743448430350111530.2.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite2743448430350111530.2.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite2743448430350111530.2.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite2743448430350111530.2.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite2743448430350111530.2.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite2743448430350111530.2.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite2743448430350111530.2.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite2743448430350111530.2.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite2743448430350111530.2.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite2743448430350111530.2.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite2743448430350111530.2.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite2743448430350111530.2.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/TempSuite2743448430350111530.2.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/TempSuite2743448430350111530.2.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite1115877555874346061.bed
/tmp/adamTestMvn1aEve53/TempSuite1115877555874346061.bed/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite1115877555874346061.bed/.part-00000.crc
/tmp/adamTestMvn1aEve53/TempSuite1115877555874346061.bed/part-00000
/tmp/adamTestMvn1aEve53/TempSuite1115877555874346061.bed/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite5593980715431638474
/tmp/adamTestMvn1aEve53/small.sam3367975926737137369.sam
/tmp/adamTestMvn1aEve53/TempSuite5547794471665063014.adam
/tmp/adamTestMvn1aEve53/TempSuite5547794471665063014.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite5547794471665063014.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite5547794471665063014.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite5547794471665063014.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite5547794471665063014.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite5547794471665063014.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite5547794471665063014.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite5547794471665063014.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite5547794471665063014.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite5547794471665063014.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite5547794471665063014.adam/_header
/tmp/adamTestMvn1aEve53/TempSuite5547794471665063014.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/unordered.sam5893202080496949038.sam
/tmp/adamTestMvn1aEve53/TempSuite3640578649270830325
/tmp/adamTestMvn1aEve53/TempSuite3834315952221622405
/tmp/adamTestMvn1aEve53/TempSuite986235147008715068.adam
/tmp/adamTestMvn1aEve53/TempSuite986235147008715068.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite986235147008715068.adam/.part-00000-65e014e9-8451-4acb-8790-bdc63911ee30-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite986235147008715068.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite986235147008715068.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite986235147008715068.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite986235147008715068.adam/part-00000-65e014e9-8451-4acb-8790-bdc63911ee30-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite986235147008715068.adam/_samples.avro
/tmp/adamTestMvn1aEve53/TempSuite986235147008715068.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite986235147008715068.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite986235147008715068.adam/.part-00002-65e014e9-8451-4acb-8790-bdc63911ee30-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite986235147008715068.adam/_header
/tmp/adamTestMvn1aEve53/TempSuite986235147008715068.adam/part-00002-65e014e9-8451-4acb-8790-bdc63911ee30-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite986235147008715068.adam/part-00001-65e014e9-8451-4acb-8790-bdc63911ee30-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite986235147008715068.adam/.part-00001-65e014e9-8451-4acb-8790-bdc63911ee30-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite4234009670193435174
/tmp/adamTestMvn1aEve53/TempSuite4396280053393456147.fa
/tmp/adamTestMvn1aEve53/TempSuite4396280053393456147.fa/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite4396280053393456147.fa/.part-00000.crc
/tmp/adamTestMvn1aEve53/TempSuite4396280053393456147.fa/part-00000
/tmp/adamTestMvn1aEve53/TempSuite4396280053393456147.fa/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite4418446773246880329
/tmp/adamTestMvn1aEve53/TempSuite8659644188445065996
/tmp/adamTestMvn1aEve53/TempSuite1518183002349513009
/tmp/adamTestMvn1aEve53/TempSuite4839935895614070288
/tmp/adamTestMvn1aEve53/TempSuite7790786004779680799
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite8367057200497080719.bed
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite8367057200497080719.bed/.part-00001.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite8367057200497080719.bed/.part-00003.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite8367057200497080719.bed/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite8367057200497080719.bed/part-00003
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite8367057200497080719.bed/.part-00000.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite8367057200497080719.bed/part-00000
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite8367057200497080719.bed/part-00002
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite8367057200497080719.bed/_SUCCESS
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite8367057200497080719.bed/part-00001
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite8367057200497080719.bed/.part-00002.crc
/tmp/adamTestMvn1aEve53/trinity.fa6575948943954089530.fa
/tmp/adamTestMvn1aEve53/.FeatureDatasetFunctionsSuite2731256703022935247.gff3.crc
/tmp/adamTestMvn1aEve53/TempSuite2868123585025156650
/tmp/adamTestMvn1aEve53/TempSuite9160145790145567259
/tmp/adamTestMvn1aEve53/TempSuite8949181634299309919.adam
/tmp/adamTestMvn1aEve53/TempSuite8949181634299309919.adam/referenceName=13
/tmp/adamTestMvn1aEve53/TempSuite8949181634299309919.adam/referenceName=13/positionBin=0
/tmp/adamTestMvn1aEve53/TempSuite8949181634299309919.adam/referenceName=13/positionBin=0/.part-00000-2849bd4f-dab8-43a8-871a-10687b153e8e.c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite8949181634299309919.adam/referenceName=13/positionBin=0/part-00000-2849bd4f-dab8-43a8-871a-10687b153e8e.c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite8949181634299309919.adam/referenceName=2
/tmp/adamTestMvn1aEve53/TempSuite8949181634299309919.adam/referenceName=2/positionBin=0
/tmp/adamTestMvn1aEve53/TempSuite8949181634299309919.adam/referenceName=2/positionBin=0/.part-00000-2849bd4f-dab8-43a8-871a-10687b153e8e.c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite8949181634299309919.adam/referenceName=2/positionBin=0/part-00000-2849bd4f-dab8-43a8-871a-10687b153e8e.c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite8949181634299309919.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite8949181634299309919.adam/._partitionedByStartPos.crc
/tmp/adamTestMvn1aEve53/TempSuite8949181634299309919.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite8949181634299309919.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite8949181634299309919.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite8949181634299309919.adam/_samples.avro
/tmp/adamTestMvn1aEve53/TempSuite8949181634299309919.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite8949181634299309919.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite8949181634299309919.adam/referenceName=1
/tmp/adamTestMvn1aEve53/TempSuite8949181634299309919.adam/referenceName=1/positionBin=0
/tmp/adamTestMvn1aEve53/TempSuite8949181634299309919.adam/referenceName=1/positionBin=0/.part-00000-2849bd4f-dab8-43a8-871a-10687b153e8e.c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite8949181634299309919.adam/referenceName=1/positionBin=0/part-00000-2849bd4f-dab8-43a8-871a-10687b153e8e.c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite8949181634299309919.adam/_header
/tmp/adamTestMvn1aEve53/TempSuite8949181634299309919.adam/_partitionedByStartPos
/tmp/adamTestMvn1aEve53/ReadDatasetSuite6066395022384373056
/tmp/adamTestMvn1aEve53/ReadDatasetSuite3059043856135112832.fastq
/tmp/adamTestMvn1aEve53/ReadDatasetSuite3059043856135112832.fastq/.part-00001.crc
/tmp/adamTestMvn1aEve53/ReadDatasetSuite3059043856135112832.fastq/.part-00003.crc
/tmp/adamTestMvn1aEve53/ReadDatasetSuite3059043856135112832.fastq/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/ReadDatasetSuite3059043856135112832.fastq/part-00003
/tmp/adamTestMvn1aEve53/ReadDatasetSuite3059043856135112832.fastq/.part-00000.crc
/tmp/adamTestMvn1aEve53/ReadDatasetSuite3059043856135112832.fastq/part-00000
/tmp/adamTestMvn1aEve53/ReadDatasetSuite3059043856135112832.fastq/part-00002
/tmp/adamTestMvn1aEve53/ReadDatasetSuite3059043856135112832.fastq/_SUCCESS
/tmp/adamTestMvn1aEve53/ReadDatasetSuite3059043856135112832.fastq/part-00001
/tmp/adamTestMvn1aEve53/ReadDatasetSuite3059043856135112832.fastq/.part-00002.crc
/tmp/adamTestMvn1aEve53/TempSuite4625600028150404787.fa
/tmp/adamTestMvn1aEve53/TempSuite4625600028150404787.fa/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite4625600028150404787.fa/.part-00000.crc
/tmp/adamTestMvn1aEve53/TempSuite4625600028150404787.fa/part-00000
/tmp/adamTestMvn1aEve53/TempSuite4625600028150404787.fa/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite576511940476960289.adam
/tmp/adamTestMvn1aEve53/TempSuite576511940476960289.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite576511940476960289.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite576511940476960289.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite576511940476960289.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite576511940476960289.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite576511940476960289.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite576511940476960289.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite576511940476960289.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite576511940476960289.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite576511940476960289.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite576511940476960289.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite576511940476960289.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/TempSuite576511940476960289.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/TempSuite576511940476960289.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/random.vcf965824412218317456.vcf
/tmp/adamTestMvn1aEve53/TempSuite3053568335236146771
/tmp/adamTestMvn1aEve53/TempSuite6904531183677208344
/tmp/adamTestMvn1aEve53/TempSuite7645480139773216005
/tmp/adamTestMvn1aEve53/.TempSuite8198630832854557060_2.fq.crc
/tmp/adamTestMvn1aEve53/9107876199418694804
/tmp/adamTestMvn1aEve53/9107876199418694804/out.bam
/tmp/adamTestMvn1aEve53/9107876199418694804/out.bam_head
/tmp/adamTestMvn1aEve53/9107876199418694804/.out.bam.crc
/tmp/adamTestMvn1aEve53/9107876199418694804/out.bam_tail
/tmp/adamTestMvn1aEve53/9107876199418694804/out.bam_tail/.part-r-00002.bam.crc
/tmp/adamTestMvn1aEve53/9107876199418694804/out.bam_tail/part-r-00002.bam
/tmp/adamTestMvn1aEve53/9107876199418694804/out.bam_tail/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/9107876199418694804/out.bam_tail/part-r-00001.bam
/tmp/adamTestMvn1aEve53/9107876199418694804/out.bam_tail/_SUCCESS
/tmp/adamTestMvn1aEve53/9107876199418694804/out.bam_tail/part-r-00003.bam
/tmp/adamTestMvn1aEve53/9107876199418694804/out.bam_tail/.part-r-00003.bam.crc
/tmp/adamTestMvn1aEve53/9107876199418694804/out.bam_tail/.part-r-00000.bam.crc
/tmp/adamTestMvn1aEve53/9107876199418694804/out.bam_tail/part-r-00000.bam
/tmp/adamTestMvn1aEve53/9107876199418694804/out.bam_tail/.part-r-00001.bam.crc
/tmp/adamTestMvn1aEve53/9107876199418694804/.out.bam_head.crc
/tmp/adamTestMvn1aEve53/TempSuite7719607168106826964
/tmp/adamTestMvn1aEve53/TempSuite1269344559243810983.adam
/tmp/adamTestMvn1aEve53/TempSuite1269344559243810983.adam/part-00000-e2cbfeef-b231-4b6c-b22b-a2e32fb2fff5-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite1269344559243810983.adam/part-00002-e2cbfeef-b231-4b6c-b22b-a2e32fb2fff5-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite1269344559243810983.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite1269344559243810983.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite1269344559243810983.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite1269344559243810983.adam/part-00001-e2cbfeef-b231-4b6c-b22b-a2e32fb2fff5-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite1269344559243810983.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite1269344559243810983.adam/.part-00001-e2cbfeef-b231-4b6c-b22b-a2e32fb2fff5-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite1269344559243810983.adam/.part-00002-e2cbfeef-b231-4b6c-b22b-a2e32fb2fff5-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite1269344559243810983.adam/.part-00000-e2cbfeef-b231-4b6c-b22b-a2e32fb2fff5-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite1269344559243810983.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite1269344559243810983.adam/_header
/tmp/adamTestMvn1aEve53/TempSuite3290763033067440745.adam
/tmp/adamTestMvn1aEve53/TempSuite3290763033067440745.adam/part-00000-8f13f04f-c2eb-4f00-a948-bb89e380ed47-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite3290763033067440745.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite3290763033067440745.adam/.part-00000-8f13f04f-c2eb-4f00-a948-bb89e380ed47-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite3290763033067440745.adam/.part-00001-8f13f04f-c2eb-4f00-a948-bb89e380ed47-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite3290763033067440745.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite3290763033067440745.adam/part-00002-8f13f04f-c2eb-4f00-a948-bb89e380ed47-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite3290763033067440745.adam/part-00001-8f13f04f-c2eb-4f00-a948-bb89e380ed47-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite3290763033067440745.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite3290763033067440745.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite3290763033067440745.adam/.part-00002-8f13f04f-c2eb-4f00-a948-bb89e380ed47-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite6412206575816827497
/tmp/adamTestMvn1aEve53/TempSuite7904185201389183684
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6094691977580274690.narrowPeak
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6094691977580274690.narrowPeak/.part-00001.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6094691977580274690.narrowPeak/.part-00003.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6094691977580274690.narrowPeak/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6094691977580274690.narrowPeak/part-00003
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6094691977580274690.narrowPeak/.part-00000.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6094691977580274690.narrowPeak/part-00000
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6094691977580274690.narrowPeak/part-00002
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6094691977580274690.narrowPeak/_SUCCESS
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6094691977580274690.narrowPeak/part-00001
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6094691977580274690.narrowPeak/.part-00002.crc
/tmp/adamTestMvn1aEve53/ReadDatasetSuite3929045430932925116
/tmp/adamTestMvn1aEve53/TempSuite4959063524612983634
/tmp/adamTestMvn1aEve53/TempSuite5560399501811763447
/tmp/adamTestMvn1aEve53/TempSuite4504604238556745588
/tmp/adamTestMvn1aEve53/1596758993356-0
/tmp/adamTestMvn1aEve53/1596758993356-0/bamReads.adam
/tmp/adamTestMvn1aEve53/1596758993356-0/bamReads.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/1596758993356-0/bamReads.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/1596758993356-0/bamReads.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/1596758993356-0/bamReads.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/1596758993356-0/bamReads.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/1596758993356-0/bamReads.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/1596758993356-0/bamReads.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/1596758993356-0/bamReads.adam/_metadata
/tmp/adamTestMvn1aEve53/1596758993356-0/bamReads.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/1596758993356-0/bamReads.adam/_common_metadata
/tmp/adamTestMvn1aEve53/1596758993356-0/bamReads.adam/_references.avro
/tmp/adamTestMvn1aEve53/1596758993356-0/bamReads.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/1596758993356-0/bamReads.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/1596758993356-0/bamReads.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite7874417701278811114.fq
/tmp/adamTestMvn1aEve53/7840117154976315678
/tmp/adamTestMvn1aEve53/7840117154976315678/genotypes.adam
/tmp/adamTestMvn1aEve53/7840117154976315678/genotypes.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/7840117154976315678/genotypes.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/7840117154976315678/genotypes.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/7840117154976315678/genotypes.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/7840117154976315678/genotypes.adam/._header.crc
/tmp/adamTestMvn1aEve53/7840117154976315678/genotypes.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/7840117154976315678/genotypes.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/7840117154976315678/genotypes.adam/_metadata
/tmp/adamTestMvn1aEve53/7840117154976315678/genotypes.adam/_samples.avro
/tmp/adamTestMvn1aEve53/7840117154976315678/genotypes.adam/_common_metadata
/tmp/adamTestMvn1aEve53/7840117154976315678/genotypes.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/7840117154976315678/genotypes.adam/_references.avro
/tmp/adamTestMvn1aEve53/7840117154976315678/genotypes.adam/_header
/tmp/adamTestMvn1aEve53/7840117154976315678/genotypes.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/6373341033731568639
/tmp/adamTestMvn1aEve53/6373341033731568639/unordered.sam
/tmp/adamTestMvn1aEve53/6373341033731568639/.unordered.sam.crc
/tmp/adamTestMvn1aEve53/7017805108086896995
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2355441930730794827
/tmp/adamTestMvn1aEve53/TempSuite4616141822270547424
/tmp/adamTestMvn1aEve53/TempSuite5974260477191809973.bed
/tmp/adamTestMvn1aEve53/TempSuite5974260477191809973.bed/.part-00001.crc
/tmp/adamTestMvn1aEve53/TempSuite5974260477191809973.bed/.part-00003.crc
/tmp/adamTestMvn1aEve53/TempSuite5974260477191809973.bed/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite5974260477191809973.bed/part-00003
/tmp/adamTestMvn1aEve53/TempSuite5974260477191809973.bed/.part-00000.crc
/tmp/adamTestMvn1aEve53/TempSuite5974260477191809973.bed/part-00000
/tmp/adamTestMvn1aEve53/TempSuite5974260477191809973.bed/part-00002
/tmp/adamTestMvn1aEve53/TempSuite5974260477191809973.bed/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite5974260477191809973.bed/part-00001
/tmp/adamTestMvn1aEve53/TempSuite5974260477191809973.bed/.part-00002.crc
/tmp/adamTestMvn1aEve53/sample1.queryname.sam6372620160066442283.queryname.sam
/tmp/adamTestMvn1aEve53/TempSuite7022992903951449312
/tmp/adamTestMvn1aEve53/TempSuite7982449322103951893
/tmp/adamTestMvn1aEve53/TempSuite404025371748288610
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite6659034825290332447.fasta
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite6659034825290332447.fasta/.part-00001.crc
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite6659034825290332447.fasta/.part-00003.crc
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite6659034825290332447.fasta/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite6659034825290332447.fasta/part-00003
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite6659034825290332447.fasta/.part-00000.crc
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite6659034825290332447.fasta/part-00000
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite6659034825290332447.fasta/part-00002
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite6659034825290332447.fasta/_SUCCESS
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite6659034825290332447.fasta/part-00001
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite6659034825290332447.fasta/.part-00002.crc
/tmp/adamTestMvn1aEve53/TempSuite1784855944946229571.sam
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2340738153887234465
/tmp/adamTestMvn1aEve53/TempSuite5693748039387073430
/tmp/adamTestMvn1aEve53/.TempSuite8932115996607824865.bam.crc
/tmp/adamTestMvn1aEve53/TempSuite6965964721948716979.sam
/tmp/adamTestMvn1aEve53/TempSuite3931242542131179013
/tmp/adamTestMvn1aEve53/TempSuite3117865421809327593.adam
/tmp/adamTestMvn1aEve53/TempSuite3117865421809327593.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite3117865421809327593.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite3117865421809327593.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite3117865421809327593.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite3117865421809327593.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite3117865421809327593.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite3117865421809327593.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite3117865421809327593.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite3117865421809327593.adam/_samples.avro
/tmp/adamTestMvn1aEve53/TempSuite3117865421809327593.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite3117865421809327593.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite3117865421809327593.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite3117865421809327593.adam/_header
/tmp/adamTestMvn1aEve53/TempSuite3117865421809327593.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6094691977580274690
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite4367042018777886835
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite4774434098005748306
/tmp/adamTestMvn1aEve53/TempSuite273117908500291689
/tmp/adamTestMvn1aEve53/TempSuite3903676401041675266
/tmp/adamTestMvn1aEve53/1596759568691-0
/tmp/adamTestMvn1aEve53/1596759568691-0/bamReads.adam
/tmp/adamTestMvn1aEve53/1596759568691-0/bamReads.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/1596759568691-0/bamReads.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/1596759568691-0/bamReads.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/1596759568691-0/bamReads.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/1596759568691-0/bamReads.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/1596759568691-0/bamReads.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/1596759568691-0/bamReads.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/1596759568691-0/bamReads.adam/_metadata
/tmp/adamTestMvn1aEve53/1596759568691-0/bamReads.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/1596759568691-0/bamReads.adam/_common_metadata
/tmp/adamTestMvn1aEve53/1596759568691-0/bamReads.adam/_references.avro
/tmp/adamTestMvn1aEve53/1596759568691-0/bamReads.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/1596759568691-0/bamReads.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/1596759568691-0/bamReads.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite7429771821504448566.bed
/tmp/adamTestMvn1aEve53/javaAC5201716638493845569
/tmp/adamTestMvn1aEve53/javaAC5201716638493845569/testRdd.feature.adam
/tmp/adamTestMvn1aEve53/javaAC5201716638493845569/testRdd.feature.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvn1aEve53/javaAC5201716638493845569/testRdd.feature.adam/part-r-00001.gz.parquet
/tmp/adamTestMvn1aEve53/javaAC5201716638493845569/testRdd.feature.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/javaAC5201716638493845569/testRdd.feature.adam/part-r-00002.gz.parquet
/tmp/adamTestMvn1aEve53/javaAC5201716638493845569/testRdd.feature.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/javaAC5201716638493845569/testRdd.feature.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/javaAC5201716638493845569/testRdd.feature.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/javaAC5201716638493845569/testRdd.feature.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/javaAC5201716638493845569/testRdd.feature.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/javaAC5201716638493845569/testRdd.feature.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvn1aEve53/javaAC5201716638493845569/testRdd.feature.adam/_metadata
/tmp/adamTestMvn1aEve53/javaAC5201716638493845569/testRdd.feature.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvn1aEve53/javaAC5201716638493845569/testRdd.feature.adam/_samples.avro
/tmp/adamTestMvn1aEve53/javaAC5201716638493845569/testRdd.feature.adam/_common_metadata
/tmp/adamTestMvn1aEve53/javaAC5201716638493845569/testRdd.feature.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/javaAC5201716638493845569/testRdd.feature.adam/_references.avro
/tmp/adamTestMvn1aEve53/javaAC5201716638493845569/testRdd.feature.adam/part-r-00003.gz.parquet
/tmp/adamTestMvn1aEve53/javaAC5201716638493845569/testRdd.feature.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite1943934033132609152.fq
/tmp/adamTestMvn1aEve53/TempSuite1943934033132609152.fq/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite1943934033132609152.fq/.part-00000.crc
/tmp/adamTestMvn1aEve53/TempSuite1943934033132609152.fq/part-00000
/tmp/adamTestMvn1aEve53/TempSuite1943934033132609152.fq/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite1248159898699223795.sam
/tmp/adamTestMvn1aEve53/TempSuite1248159898699223795.sam/part-r-00000.sam
/tmp/adamTestMvn1aEve53/TempSuite1248159898699223795.sam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite1248159898699223795.sam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite1248159898699223795.sam/.part-r-00000.sam.crc
/tmp/adamTestMvn1aEve53/TempSuite8582914394215427752
/tmp/adamTestMvn1aEve53/TempSuite3071893917997637092.bed
/tmp/adamTestMvn1aEve53/TempSuite3071893917997637092.bed/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite3071893917997637092.bed/.part-00000.crc
/tmp/adamTestMvn1aEve53/TempSuite3071893917997637092.bed/part-00000
/tmp/adamTestMvn1aEve53/TempSuite3071893917997637092.bed/_SUCCESS
/tmp/adamTestMvn1aEve53/5319501698431895011
/tmp/adamTestMvn1aEve53/5319501698431895011/sorted.lex.vcf
/tmp/adamTestMvn1aEve53/5319501698431895011/.sorted.lex.vcf.crc
/tmp/adamTestMvn1aEve53/TempSuite3586295251960155754reads12.sam
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2927422353197026634
/tmp/adamTestMvn1aEve53/TempSuite108442085698598004
/tmp/adamTestMvn1aEve53/TempSuite4431993619263246492
/tmp/adamTestMvn1aEve53/TempSuite8229917353417235520
/tmp/adamTestMvn1aEve53/TempSuite4132043689649257606
/tmp/adamTestMvn1aEve53/.FeatureDatasetFunctionsSuite6618208183082345923.interval_list.crc
/tmp/adamTestMvn1aEve53/TempSuite3663657982204823826.adam
/tmp/adamTestMvn1aEve53/TempSuite3663657982204823826.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite3663657982204823826.adam/part-00000-bacfe1bb-9e1b-48ac-8e10-283fe46050ea-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite3663657982204823826.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite3663657982204823826.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite3663657982204823826.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite3663657982204823826.adam/.part-00000-bacfe1bb-9e1b-48ac-8e10-283fe46050ea-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite3663657982204823826.adam/_samples.avro
/tmp/adamTestMvn1aEve53/TempSuite3663657982204823826.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite3663657982204823826.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite3663657982204823826.adam/_header
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6618208183082345923.interval_list
/tmp/adamTestMvn1aEve53/4432716635321738399
/tmp/adamTestMvn1aEve53/4432716635321738399/.ordered.sam.crc
/tmp/adamTestMvn1aEve53/4432716635321738399/ordered.sam
/tmp/adamTestMvn1aEve53/3899475513847809211
/tmp/adamTestMvn1aEve53/3899475513847809211/predicate.3.adam
/tmp/adamTestMvn1aEve53/3899475513847809211/predicate.3.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/3899475513847809211/predicate.3.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/3899475513847809211/predicate.3.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/3899475513847809211/predicate.3.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/3899475513847809211/predicate.3.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/3899475513847809211/predicate.3.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/3899475513847809211/predicate.3.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/3899475513847809211/predicate.3.adam/_metadata
/tmp/adamTestMvn1aEve53/3899475513847809211/predicate.3.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/3899475513847809211/predicate.3.adam/_common_metadata
/tmp/adamTestMvn1aEve53/3899475513847809211/predicate.3.adam/_references.avro
/tmp/adamTestMvn1aEve53/3899475513847809211/predicate.3.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/3899475513847809211/predicate.3.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/3899475513847809211/predicate.3.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite1518183002349513009.bed
/tmp/adamTestMvn1aEve53/TempSuite1518183002349513009.bed/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite1518183002349513009.bed/.part-00000.crc
/tmp/adamTestMvn1aEve53/TempSuite1518183002349513009.bed/part-00000
/tmp/adamTestMvn1aEve53/TempSuite1518183002349513009.bed/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite8582914394215427752.adam
/tmp/adamTestMvn1aEve53/TempSuite8582914394215427752.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite8582914394215427752.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite8582914394215427752.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite8582914394215427752.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite8582914394215427752.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite8582914394215427752.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite8582914394215427752.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite8582914394215427752.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite8582914394215427752.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite8582914394215427752.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite731461564958848643
/tmp/adamTestMvn1aEve53/small.sam5232845162889579925.sam
/tmp/adamTestMvn1aEve53/1692408280748793141
/tmp/adamTestMvn1aEve53/1692408280748793141/.ordered.sam.crc
/tmp/adamTestMvn1aEve53/1692408280748793141/ordered.sam
/tmp/adamTestMvn1aEve53/TempSuite4925040575087060157.adam
/tmp/adamTestMvn1aEve53/TempSuite4925040575087060157.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite4925040575087060157.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite4925040575087060157.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite4925040575087060157.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite4925040575087060157.adam/part-00000-b9722120-17c6-42ff-a349-9700c0d76ec0-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite4925040575087060157.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite4925040575087060157.adam/.part-00000-b9722120-17c6-42ff-a349-9700c0d76ec0-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite4925040575087060157.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite4925040575087060157.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/TempSuite4925040575087060157.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/.TempSuite5798561161722449001.sam.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite4774434098005748306.bed
/tmp/adamTestMvn1aEve53/TempSuite108442085698598004.bed
/tmp/adamTestMvn1aEve53/TempSuite108442085698598004.bed/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite108442085698598004.bed/.part-00000.crc
/tmp/adamTestMvn1aEve53/TempSuite108442085698598004.bed/part-00000
/tmp/adamTestMvn1aEve53/TempSuite108442085698598004.bed/_SUCCESS
/tmp/adamTestMvn1aEve53/4402575377334402038
/tmp/adamTestMvn1aEve53/4402575377334402038/.sorted-variants.lex.vcf.crc
/tmp/adamTestMvn1aEve53/4402575377334402038/sorted-variants.lex.vcf
/tmp/adamTestMvn1aEve53/TempSuite4095213553663720194.bed
/tmp/adamTestMvn1aEve53/TempSuite4095213553663720194.bed/.part-00001.crc
/tmp/adamTestMvn1aEve53/TempSuite4095213553663720194.bed/.part-00003.crc
/tmp/adamTestMvn1aEve53/TempSuite4095213553663720194.bed/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite4095213553663720194.bed/part-00003
/tmp/adamTestMvn1aEve53/TempSuite4095213553663720194.bed/.part-00000.crc
/tmp/adamTestMvn1aEve53/TempSuite4095213553663720194.bed/part-00000
/tmp/adamTestMvn1aEve53/TempSuite4095213553663720194.bed/part-00002
/tmp/adamTestMvn1aEve53/TempSuite4095213553663720194.bed/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite4095213553663720194.bed/part-00001
/tmp/adamTestMvn1aEve53/TempSuite4095213553663720194.bed/.part-00002.crc
/tmp/adamTestMvn1aEve53/762466520414741010
/tmp/adamTestMvn1aEve53/762466520414741010/.ordered.sam.crc
/tmp/adamTestMvn1aEve53/762466520414741010/ordered.sam
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite4234009670193435174.narrowPeak
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite4234009670193435174.narrowPeak/.part-00001.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite4234009670193435174.narrowPeak/.part-00003.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite4234009670193435174.narrowPeak/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite4234009670193435174.narrowPeak/part-00003
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite4234009670193435174.narrowPeak/.part-00000.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite4234009670193435174.narrowPeak/part-00000
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite4234009670193435174.narrowPeak/part-00002
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite4234009670193435174.narrowPeak/_SUCCESS
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite4234009670193435174.narrowPeak/part-00001
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite4234009670193435174.narrowPeak/.part-00002.crc
/tmp/adamTestMvn1aEve53/TempSuite4434465770696769474
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite5902202378755343390
/tmp/adamTestMvn1aEve53/TempSuite835159488380114516.adam
/tmp/adamTestMvn1aEve53/TempSuite835159488380114516.adam/part-00001-1f790b60-7984-4abb-a1b8-1aeaea494177-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite835159488380114516.adam/.part-00001-1f790b60-7984-4abb-a1b8-1aeaea494177-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite835159488380114516.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite835159488380114516.adam/.part-00002-1f790b60-7984-4abb-a1b8-1aeaea494177-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite835159488380114516.adam/part-00000-1f790b60-7984-4abb-a1b8-1aeaea494177-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite835159488380114516.adam/.part-00000-1f790b60-7984-4abb-a1b8-1aeaea494177-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite835159488380114516.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite835159488380114516.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite835159488380114516.adam/part-00002-1f790b60-7984-4abb-a1b8-1aeaea494177-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite835159488380114516.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite835159488380114516.adam/_samples.avro
/tmp/adamTestMvn1aEve53/TempSuite835159488380114516.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite835159488380114516.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite835159488380114516.adam/_header
/tmp/adamTestMvn1aEve53/.FeatureDatasetFunctionsSuite4367042018777886835.bed.crc
/tmp/adamTestMvn1aEve53/TempSuite2335899936241233874
/tmp/adamTestMvn1aEve53/TempSuite2284653482884825860
/tmp/adamTestMvn1aEve53/TempSuite8983324440602435292.bed
/tmp/adamTestMvn1aEve53/TempSuite8983324440602435292.bed/.part-00001.crc
/tmp/adamTestMvn1aEve53/TempSuite8983324440602435292.bed/.part-00003.crc
/tmp/adamTestMvn1aEve53/TempSuite8983324440602435292.bed/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite8983324440602435292.bed/part-00003
/tmp/adamTestMvn1aEve53/TempSuite8983324440602435292.bed/.part-00000.crc
/tmp/adamTestMvn1aEve53/TempSuite8983324440602435292.bed/part-00000
/tmp/adamTestMvn1aEve53/TempSuite8983324440602435292.bed/part-00002
/tmp/adamTestMvn1aEve53/TempSuite8983324440602435292.bed/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite8983324440602435292.bed/part-00001
/tmp/adamTestMvn1aEve53/TempSuite8983324440602435292.bed/.part-00002.crc
/tmp/adamTestMvn1aEve53/TempSuite6878649838386579161.adam
/tmp/adamTestMvn1aEve53/TempSuite6878649838386579161.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite6878649838386579161.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite6878649838386579161.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite6878649838386579161.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite6878649838386579161.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite6878649838386579161.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite6878649838386579161.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite6878649838386579161.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite6878649838386579161.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite6878649838386579161.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/7296150543033804863
/tmp/adamTestMvn1aEve53/7296150543033804863/.gff3
/tmp/adamTestMvn1aEve53/7296150543033804863/..gff3.crc
/tmp/adamTestMvn1aEve53/javaAC1644691954175496198
/tmp/adamTestMvn1aEve53/javaAC1644691954175496198/testRdd.variant.adam
/tmp/adamTestMvn1aEve53/javaAC1644691954175496198/testRdd.variant.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/javaAC1644691954175496198/testRdd.variant.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/javaAC1644691954175496198/testRdd.variant.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/javaAC1644691954175496198/testRdd.variant.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/javaAC1644691954175496198/testRdd.variant.adam/._header.crc
/tmp/adamTestMvn1aEve53/javaAC1644691954175496198/testRdd.variant.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/javaAC1644691954175496198/testRdd.variant.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/javaAC1644691954175496198/testRdd.variant.adam/_metadata
/tmp/adamTestMvn1aEve53/javaAC1644691954175496198/testRdd.variant.adam/_common_metadata
/tmp/adamTestMvn1aEve53/javaAC1644691954175496198/testRdd.variant.adam/_references.avro
/tmp/adamTestMvn1aEve53/javaAC1644691954175496198/testRdd.variant.adam/_header
/tmp/adamTestMvn1aEve53/javaAC1644691954175496198/testRdd.variant.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite7987149786910030415
/tmp/adamTestMvn1aEve53/TempSuite3966361436744218628
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite4741454191430905556
/tmp/adamTestMvn1aEve53/TempSuite304364378623276603.bed
/tmp/adamTestMvn1aEve53/TempSuite304364378623276603.bed/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite304364378623276603.bed/.part-00000.crc
/tmp/adamTestMvn1aEve53/TempSuite304364378623276603.bed/part-00000
/tmp/adamTestMvn1aEve53/TempSuite304364378623276603.bed/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite5434960504846759902
/tmp/adamTestMvn1aEve53/TempSuite7838527173071403197
/tmp/adamTestMvn1aEve53/TempSuite2380211456001576736
/tmp/adamTestMvn1aEve53/TempSuite8134727266750468947
/tmp/adamTestMvn1aEve53/ordered.sam1738870281743071189.sam
/tmp/adamTestMvn1aEve53/8712152236819347901
/tmp/adamTestMvn1aEve53/8712152236819347901/out.sam_head
/tmp/adamTestMvn1aEve53/8712152236819347901/.out.sam_head.crc
/tmp/adamTestMvn1aEve53/8712152236819347901/out.sam_tail
/tmp/adamTestMvn1aEve53/8712152236819347901/out.sam_tail/part-r-00002.sam
/tmp/adamTestMvn1aEve53/8712152236819347901/out.sam_tail/part-r-00000.sam
/tmp/adamTestMvn1aEve53/8712152236819347901/out.sam_tail/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/8712152236819347901/out.sam_tail/_SUCCESS
/tmp/adamTestMvn1aEve53/8712152236819347901/out.sam_tail/.part-r-00000.sam.crc
/tmp/adamTestMvn1aEve53/8712152236819347901/out.sam_tail/part-r-00003.sam
/tmp/adamTestMvn1aEve53/8712152236819347901/out.sam_tail/.part-r-00002.sam.crc
/tmp/adamTestMvn1aEve53/8712152236819347901/out.sam_tail/.part-r-00001.sam.crc
/tmp/adamTestMvn1aEve53/8712152236819347901/out.sam_tail/part-r-00001.sam
/tmp/adamTestMvn1aEve53/8712152236819347901/out.sam_tail/.part-r-00003.sam.crc
/tmp/adamTestMvn1aEve53/8712152236819347901/.out.sam.crc
/tmp/adamTestMvn1aEve53/8712152236819347901/out.sam
/tmp/adamTestMvn1aEve53/TempSuite5242808864114880682
/tmp/adamTestMvn1aEve53/TempSuite3635331428948745985
/tmp/adamTestMvn1aEve53/TempSuite2541385991357697335
/tmp/adamTestMvn1aEve53/bqsr1.sam8601949733686731351.sam
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite8367057200497080719
/tmp/adamTestMvn1aEve53/TempSuite3637008266765463008.bed
/tmp/adamTestMvn1aEve53/TempSuite3637008266765463008.bed/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite3637008266765463008.bed/.part-00000.crc
/tmp/adamTestMvn1aEve53/TempSuite3637008266765463008.bed/part-00000
/tmp/adamTestMvn1aEve53/TempSuite3637008266765463008.bed/_SUCCESS
/tmp/adamTestMvn1aEve53/random.vcf6853695572087665724.vcf
/tmp/adamTestMvn1aEve53/TempSuite7187296832035038305.adam
/tmp/adamTestMvn1aEve53/TempSuite7187296832035038305.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite7187296832035038305.adam/part-00000-ecdfa5dd-406c-4520-9f82-fc656a580290-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite7187296832035038305.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite7187296832035038305.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite7187296832035038305.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite7187296832035038305.adam/_samples.avro
/tmp/adamTestMvn1aEve53/TempSuite7187296832035038305.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite7187296832035038305.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite7187296832035038305.adam/.part-00000-ecdfa5dd-406c-4520-9f82-fc656a580290-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite7187296832035038305.adam/_header
/tmp/adamTestMvn1aEve53/TempSuite3288413006118694050
/tmp/adamTestMvn1aEve53/TempSuite8634222212785904273
/tmp/adamTestMvn1aEve53/TempSuite1738208867696090280.adam
/tmp/adamTestMvn1aEve53/TempSuite1738208867696090280.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite1738208867696090280.adam/part-r-00001.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite1738208867696090280.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite1738208867696090280.adam/part-r-00002.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite1738208867696090280.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite1738208867696090280.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite1738208867696090280.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite1738208867696090280.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite1738208867696090280.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite1738208867696090280.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite1738208867696090280.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite1738208867696090280.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite1738208867696090280.adam/_samples.avro
/tmp/adamTestMvn1aEve53/TempSuite1738208867696090280.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite1738208867696090280.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite1738208867696090280.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite1738208867696090280.adam/part-r-00003.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite1738208867696090280.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/ReadDatasetSuite829012392690927842
/tmp/adamTestMvn1aEve53/TempSuite7982449322103951893.adam
/tmp/adamTestMvn1aEve53/TempSuite7982449322103951893.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite7982449322103951893.adam/part-r-00001.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite7982449322103951893.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite7982449322103951893.adam/part-r-00002.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite7982449322103951893.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite7982449322103951893.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite7982449322103951893.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite7982449322103951893.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite7982449322103951893.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite7982449322103951893.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite7982449322103951893.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite7982449322103951893.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite7982449322103951893.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite7982449322103951893.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite7982449322103951893.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite7982449322103951893.adam/part-r-00003.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite7982449322103951893.adam/_header
/tmp/adamTestMvn1aEve53/TempSuite7982449322103951893.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite3775701763455540452.adam
/tmp/adamTestMvn1aEve53/TempSuite3775701763455540452.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite3775701763455540452.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite3775701763455540452.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite3775701763455540452.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite3775701763455540452.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite3775701763455540452.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite3775701763455540452.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite3775701763455540452.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite3775701763455540452.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite3775701763455540452.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite3775701763455540452.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite3775701763455540452.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/TempSuite3775701763455540452.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/TempSuite3775701763455540452.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite4861724945117730572
/tmp/adamTestMvn1aEve53/TempSuite379155459093858009.bed
/tmp/adamTestMvn1aEve53/TempSuite379155459093858009.bed/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite379155459093858009.bed/.part-00000.crc
/tmp/adamTestMvn1aEve53/TempSuite379155459093858009.bed/part-00000
/tmp/adamTestMvn1aEve53/TempSuite379155459093858009.bed/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite9056739509470045785
/tmp/adamTestMvn1aEve53/ReadDatasetSuite829012392690927842.fastq
/tmp/adamTestMvn1aEve53/TempSuite1981728222086255487.adam
/tmp/adamTestMvn1aEve53/TempSuite1981728222086255487.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite1981728222086255487.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite1981728222086255487.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite1981728222086255487.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite1981728222086255487.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite1981728222086255487.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite1981728222086255487.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite1981728222086255487.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite1981728222086255487.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite1981728222086255487.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite1981728222086255487.adam/_header
/tmp/adamTestMvn1aEve53/TempSuite1981728222086255487.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite3174470337555496395.adam
/tmp/adamTestMvn1aEve53/TempSuite3174470337555496395.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite3174470337555496395.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite3174470337555496395.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite3174470337555496395.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite3174470337555496395.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite3174470337555496395.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite3174470337555496395.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite3174470337555496395.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite3174470337555496395.adam/_samples.avro
/tmp/adamTestMvn1aEve53/TempSuite3174470337555496395.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite3174470337555496395.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite3174470337555496395.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite3174470337555496395.adam/_header
/tmp/adamTestMvn1aEve53/TempSuite3174470337555496395.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/.TempSuite6965964721948716979.sam.crc
/tmp/adamTestMvn1aEve53/TempSuite830208059193706612.adam
/tmp/adamTestMvn1aEve53/TempSuite830208059193706612.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite830208059193706612.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite830208059193706612.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite830208059193706612.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite830208059193706612.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite830208059193706612.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite830208059193706612.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite830208059193706612.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite830208059193706612.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite830208059193706612.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite830208059193706612.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite830208059193706612.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/TempSuite830208059193706612.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/TempSuite830208059193706612.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite2541073708956595256
/tmp/adamTestMvn1aEve53/TempSuite7894306201656806264
/tmp/adamTestMvn1aEve53/TempSuite8970974159020909231
/tmp/adamTestMvn1aEve53/1146130239645468733
/tmp/adamTestMvn1aEve53/1146130239645468733/sorted.vcf
/tmp/adamTestMvn1aEve53/1146130239645468733/.sorted.vcf.crc
/tmp/adamTestMvn1aEve53/TempSuite6965964721948716979
/tmp/adamTestMvn1aEve53/TempSuite3053568335236146771.adam
/tmp/adamTestMvn1aEve53/TempSuite3053568335236146771.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite3053568335236146771.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite3053568335236146771.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite3053568335236146771.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite3053568335236146771.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite3053568335236146771.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite3053568335236146771.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite3053568335236146771.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite3053568335236146771.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite3053568335236146771.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite574421886474054689
/tmp/adamTestMvn1aEve53/TempSuite4861724945117730572.adam
/tmp/adamTestMvn1aEve53/TempSuite4861724945117730572.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite4861724945117730572.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite4861724945117730572.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite4861724945117730572.adam/part-00000-8781e3fa-4c9e-4512-952f-5358c366d9a1-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite4861724945117730572.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite4861724945117730572.adam/.part-00000-8781e3fa-4c9e-4512-952f-5358c366d9a1-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite4210213818266791584
/tmp/adamTestMvn1aEve53/8071080462596596652
/tmp/adamTestMvn1aEve53/8071080462596596652/predicate.3.adam
/tmp/adamTestMvn1aEve53/8071080462596596652/predicate.3.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/8071080462596596652/predicate.3.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/8071080462596596652/predicate.3.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/8071080462596596652/predicate.3.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/8071080462596596652/predicate.3.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/8071080462596596652/predicate.3.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/8071080462596596652/predicate.3.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/8071080462596596652/predicate.3.adam/_metadata
/tmp/adamTestMvn1aEve53/8071080462596596652/predicate.3.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/8071080462596596652/predicate.3.adam/_common_metadata
/tmp/adamTestMvn1aEve53/8071080462596596652/predicate.3.adam/_references.avro
/tmp/adamTestMvn1aEve53/8071080462596596652/predicate.3.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/8071080462596596652/predicate.3.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/8071080462596596652/predicate.3.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite4741454191430905556.fasta
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite4741454191430905556.fasta/.part-00001.crc
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite4741454191430905556.fasta/.part-00003.crc
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite4741454191430905556.fasta/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite4741454191430905556.fasta/part-00003
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite4741454191430905556.fasta/.part-00000.crc
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite4741454191430905556.fasta/part-00000
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite4741454191430905556.fasta/part-00002
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite4741454191430905556.fasta/_SUCCESS
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite4741454191430905556.fasta/part-00001
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite4741454191430905556.fasta/.part-00002.crc
/tmp/adamTestMvn1aEve53/TempSuite8530679922727153652.adam
/tmp/adamTestMvn1aEve53/TempSuite8530679922727153652.adam/part-00000-fa9049fe-8de2-4f79-918d-b6304b820d65-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite8530679922727153652.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite8530679922727153652.adam/.part-00000-fa9049fe-8de2-4f79-918d-b6304b820d65-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite8530679922727153652.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite8530679922727153652.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite8530679922727153652.adam/.part-00002-fa9049fe-8de2-4f79-918d-b6304b820d65-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite8530679922727153652.adam/part-00002-fa9049fe-8de2-4f79-918d-b6304b820d65-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite8530679922727153652.adam/_samples.avro
/tmp/adamTestMvn1aEve53/TempSuite8530679922727153652.adam/.part-00001-fa9049fe-8de2-4f79-918d-b6304b820d65-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite8530679922727153652.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite8530679922727153652.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite8530679922727153652.adam/part-00001-fa9049fe-8de2-4f79-918d-b6304b820d65-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite576511940476960289
/tmp/adamTestMvn1aEve53/ordered.sam8542517453396766961.sam
/tmp/adamTestMvn1aEve53/TempSuite7033453440049655612.fq
/tmp/adamTestMvn1aEve53/TempSuite7033453440049655612.fq/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite7033453440049655612.fq/.part-00000.crc
/tmp/adamTestMvn1aEve53/TempSuite7033453440049655612.fq/part-00000
/tmp/adamTestMvn1aEve53/TempSuite7033453440049655612.fq/_SUCCESS
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite4149006041336147537.interval_list
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite4149006041336147537.interval_list/.part-00001.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite4149006041336147537.interval_list/.part-00003.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite4149006041336147537.interval_list/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite4149006041336147537.interval_list/part-00003
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite4149006041336147537.interval_list/.part-00000.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite4149006041336147537.interval_list/part-00000
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite4149006041336147537.interval_list/part-00002
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite4149006041336147537.interval_list/_SUCCESS
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite4149006041336147537.interval_list/part-00001
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite4149006041336147537.interval_list/.part-00002.crc
/tmp/adamTestMvn1aEve53/TempSuite3359272262832617883
/tmp/adamTestMvn1aEve53/TempSuite4038243719690036342.adam
/tmp/adamTestMvn1aEve53/TempSuite4038243719690036342.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite4038243719690036342.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite4038243719690036342.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite4038243719690036342.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite4038243719690036342.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite4038243719690036342.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite4038243719690036342.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite4038243719690036342.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite4038243719690036342.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite4038243719690036342.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite654130617410634606
/tmp/adamTestMvn1aEve53/TempSuite4431993619263246492.bed
/tmp/adamTestMvn1aEve53/TempSuite4431993619263246492.bed/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite4431993619263246492.bed/.part-00000.crc
/tmp/adamTestMvn1aEve53/TempSuite4431993619263246492.bed/part-00000
/tmp/adamTestMvn1aEve53/TempSuite4431993619263246492.bed/_SUCCESS
/tmp/adamTestMvn1aEve53/artificial.sam4169064207929106945.sam
/tmp/adamTestMvn1aEve53/6101521808418774921
/tmp/adamTestMvn1aEve53/6101521808418774921/unordered.adam
/tmp/adamTestMvn1aEve53/6101521808418774921/unordered.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/6101521808418774921/unordered.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/6101521808418774921/unordered.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/6101521808418774921/unordered.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/6101521808418774921/unordered.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/6101521808418774921/unordered.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/6101521808418774921/unordered.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/6101521808418774921/unordered.adam/_metadata
/tmp/adamTestMvn1aEve53/6101521808418774921/unordered.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/6101521808418774921/unordered.adam/_common_metadata
/tmp/adamTestMvn1aEve53/6101521808418774921/unordered.adam/_references.avro
/tmp/adamTestMvn1aEve53/6101521808418774921/unordered.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/6101521808418774921/unordered.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/6101521808418774921/unordered.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite5527711198772477266.interval_list
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite5527711198772477266.interval_list/.part-00001.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite5527711198772477266.interval_list/.part-00003.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite5527711198772477266.interval_list/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite5527711198772477266.interval_list/part-00003
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite5527711198772477266.interval_list/.part-00000.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite5527711198772477266.interval_list/part-00000
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite5527711198772477266.interval_list/part-00002
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite5527711198772477266.interval_list/_SUCCESS
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite5527711198772477266.interval_list/part-00001
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite5527711198772477266.interval_list/.part-00002.crc
/tmp/adamTestMvn1aEve53/TempSuite8329923660103659278
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite4549930587296113403.gtf
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite4549930587296113403.gtf/.part-00001.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite4549930587296113403.gtf/.part-00003.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite4549930587296113403.gtf/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite4549930587296113403.gtf/part-00003
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite4549930587296113403.gtf/.part-00000.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite4549930587296113403.gtf/part-00000
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite4549930587296113403.gtf/part-00002
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite4549930587296113403.gtf/_SUCCESS
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite4549930587296113403.gtf/part-00001
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite4549930587296113403.gtf/.part-00002.crc
/tmp/adamTestMvn1aEve53/TempSuite1874318147631355997.adam
/tmp/adamTestMvn1aEve53/TempSuite1874318147631355997.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite1874318147631355997.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite1874318147631355997.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite1874318147631355997.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite1874318147631355997.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite1874318147631355997.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite1874318147631355997.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite1874318147631355997.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite1874318147631355997.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite1874318147631355997.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite1874318147631355997.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite1874318147631355997.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/TempSuite1874318147631355997.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/TempSuite1874318147631355997.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite4418446773246880329.adam
/tmp/adamTestMvn1aEve53/TempSuite4418446773246880329.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite4418446773246880329.adam/part-00000-2ddd5705-8bf6-4408-a938-61cf395444c0-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite4418446773246880329.adam/.part-00000-2ddd5705-8bf6-4408-a938-61cf395444c0-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite4418446773246880329.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite4418446773246880329.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite4418446773246880329.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite4418446773246880329.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite4418446773246880329.adam/_header
/tmp/adamTestMvn1aEve53/TempSuite3071893917997637092
/tmp/adamTestMvn1aEve53/TempSuite3469962871532329877
/tmp/adamTestMvn1aEve53/TempSuite7557298150246705877.adam
/tmp/adamTestMvn1aEve53/TempSuite7557298150246705877.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite7557298150246705877.adam/part-r-00001.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite7557298150246705877.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite7557298150246705877.adam/part-r-00002.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite7557298150246705877.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite7557298150246705877.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite7557298150246705877.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite7557298150246705877.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite7557298150246705877.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite7557298150246705877.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite7557298150246705877.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite7557298150246705877.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite7557298150246705877.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite7557298150246705877.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite7557298150246705877.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite7557298150246705877.adam/part-r-00003.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite7557298150246705877.adam/_header
/tmp/adamTestMvn1aEve53/TempSuite7557298150246705877.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite6167650813969258618
/tmp/adamTestMvn1aEve53/3349786899946351943
/tmp/adamTestMvn1aEve53/3349786899946351943/sorted.lex.vcf
/tmp/adamTestMvn1aEve53/3349786899946351943/.sorted.lex.vcf.crc
/tmp/adamTestMvn1aEve53/2547756525088068062
/tmp/adamTestMvn1aEve53/2547756525088068062/.artificial.cram.crc
/tmp/adamTestMvn1aEve53/2547756525088068062/artificial.cram
/tmp/adamTestMvn1aEve53/ReadDatasetSuite5885552654863381561
/tmp/adamTestMvn1aEve53/TempSuite7770166527206109818
/tmp/adamTestMvn1aEve53/TempSuite1289336840828269058.adam
/tmp/adamTestMvn1aEve53/TempSuite1289336840828269058.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite1289336840828269058.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite1289336840828269058.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite1289336840828269058.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite1289336840828269058.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite1289336840828269058.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite1289336840828269058.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite1289336840828269058.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite1289336840828269058.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite1289336840828269058.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite1289336840828269058.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite1289336840828269058.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/TempSuite1289336840828269058.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/TempSuite1289336840828269058.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite711961253945770697.adam
/tmp/adamTestMvn1aEve53/TempSuite711961253945770697.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite711961253945770697.adam/._partitionedByStartPos.crc
/tmp/adamTestMvn1aEve53/TempSuite711961253945770697.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite711961253945770697.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite711961253945770697.adam/_samples.avro
/tmp/adamTestMvn1aEve53/TempSuite711961253945770697.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite711961253945770697.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite711961253945770697.adam/referenceName=1
/tmp/adamTestMvn1aEve53/TempSuite711961253945770697.adam/referenceName=1/positionBin=14
/tmp/adamTestMvn1aEve53/TempSuite711961253945770697.adam/referenceName=1/positionBin=14/part-00000-0180572e-de71-49b5-80a1-847d11219a8e.c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite711961253945770697.adam/referenceName=1/positionBin=14/.part-00000-0180572e-de71-49b5-80a1-847d11219a8e.c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite711961253945770697.adam/referenceName=1/positionBin=169
/tmp/adamTestMvn1aEve53/TempSuite711961253945770697.adam/referenceName=1/positionBin=169/.part-00001-0180572e-de71-49b5-80a1-847d11219a8e.c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite711961253945770697.adam/referenceName=1/positionBin=169/part-00001-0180572e-de71-49b5-80a1-847d11219a8e.c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite711961253945770697.adam/referenceName=1/positionBin=240
/tmp/adamTestMvn1aEve53/TempSuite711961253945770697.adam/referenceName=1/positionBin=240/.part-00002-0180572e-de71-49b5-80a1-847d11219a8e.c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite711961253945770697.adam/referenceName=1/positionBin=240/part-00002-0180572e-de71-49b5-80a1-847d11219a8e.c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite711961253945770697.adam/referenceName=1/positionBin=0
/tmp/adamTestMvn1aEve53/TempSuite711961253945770697.adam/referenceName=1/positionBin=0/part-00000-0180572e-de71-49b5-80a1-847d11219a8e.c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite711961253945770697.adam/referenceName=1/positionBin=0/.part-00000-0180572e-de71-49b5-80a1-847d11219a8e.c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite711961253945770697.adam/_partitionedByStartPos
/tmp/adamTestMvn1aEve53/TempSuite6908119525554691966
/tmp/adamTestMvn1aEve53/TempSuite3047861139679351924_2.fq
/tmp/adamTestMvn1aEve53/TempSuite3047861139679351924_2.fq/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite3047861139679351924_2.fq/.part-00000.crc
/tmp/adamTestMvn1aEve53/TempSuite3047861139679351924_2.fq/part-00000
/tmp/adamTestMvn1aEve53/TempSuite3047861139679351924_2.fq/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite2711753320998115209
/tmp/adamTestMvn1aEve53/TempSuite7838527173071403197.adam
/tmp/adamTestMvn1aEve53/TempSuite7838527173071403197.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite7838527173071403197.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite7838527173071403197.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite7838527173071403197.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite7838527173071403197.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite7838527173071403197.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite7838527173071403197.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite7838527173071403197.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite7838527173071403197.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite7838527173071403197.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite4819768647821095151
/tmp/adamTestMvn1aEve53/TempSuite3931242542131179013.bed
/tmp/adamTestMvn1aEve53/TempSuite3931242542131179013.bed/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite3931242542131179013.bed/.part-00000.crc
/tmp/adamTestMvn1aEve53/TempSuite3931242542131179013.bed/part-00000
/tmp/adamTestMvn1aEve53/TempSuite3931242542131179013.bed/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite7593574904934473855
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite8968880501625550624
/tmp/adamTestMvn1aEve53/TempSuite3779211249566026278.adam
/tmp/adamTestMvn1aEve53/TempSuite3779211249566026278.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite3779211249566026278.adam/part-r-00001.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite3779211249566026278.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite3779211249566026278.adam/part-r-00004.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite3779211249566026278.adam/part-r-00002.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite3779211249566026278.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite3779211249566026278.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite3779211249566026278.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite3779211249566026278.adam/.part-r-00004.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite3779211249566026278.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite3779211249566026278.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite3779211249566026278.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite3779211249566026278.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite3779211249566026278.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite3779211249566026278.adam/_samples.avro
/tmp/adamTestMvn1aEve53/TempSuite3779211249566026278.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite3779211249566026278.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite3779211249566026278.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite3779211249566026278.adam/part-r-00003.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite3779211249566026278.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite3961701284025693411
/tmp/adamTestMvn1aEve53/TempSuite5405187371436656470_1.fq
/tmp/adamTestMvn1aEve53/small.sam360530122567453646.sam
/tmp/adamTestMvn1aEve53/TempSuite4132043689649257606.bed
/tmp/adamTestMvn1aEve53/TempSuite4132043689649257606.bed/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite4132043689649257606.bed/.part-00000.crc
/tmp/adamTestMvn1aEve53/TempSuite4132043689649257606.bed/part-00000
/tmp/adamTestMvn1aEve53/TempSuite4132043689649257606.bed/_SUCCESS
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite7581853726507725652
/tmp/adamTestMvn1aEve53/TempSuite8486816015481355024.adam
/tmp/adamTestMvn1aEve53/TempSuite8486816015481355024.adam/.part-00002-5c78fc72-a649-4f45-9092-254c4dbdf248-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite8486816015481355024.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite8486816015481355024.adam/.part-00001-5c78fc72-a649-4f45-9092-254c4dbdf248-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite8486816015481355024.adam/.part-00000-5c78fc72-a649-4f45-9092-254c4dbdf248-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite8486816015481355024.adam/part-00000-5c78fc72-a649-4f45-9092-254c4dbdf248-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite8486816015481355024.adam/part-00001-5c78fc72-a649-4f45-9092-254c4dbdf248-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite8486816015481355024.adam/part-00002-5c78fc72-a649-4f45-9092-254c4dbdf248-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite8486816015481355024.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite8486816015481355024.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite8486816015481355024.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite8486816015481355024.adam/_samples.avro
/tmp/adamTestMvn1aEve53/TempSuite8486816015481355024.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite8486816015481355024.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite8486816015481355024.adam/_header
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2019859250411959994
/tmp/adamTestMvn1aEve53/TempSuite2853975792301754030
/tmp/adamTestMvn1aEve53/javaAC5896305463821244303
/tmp/adamTestMvn1aEve53/javaAC5896305463821244303/testRdd.fragment.adam
/tmp/adamTestMvn1aEve53/javaAC5896305463821244303/testRdd.fragment.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/javaAC5896305463821244303/testRdd.fragment.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/javaAC5896305463821244303/testRdd.fragment.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/javaAC5896305463821244303/testRdd.fragment.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/javaAC5896305463821244303/testRdd.fragment.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/javaAC5896305463821244303/testRdd.fragment.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/javaAC5896305463821244303/testRdd.fragment.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/javaAC5896305463821244303/testRdd.fragment.adam/_metadata
/tmp/adamTestMvn1aEve53/javaAC5896305463821244303/testRdd.fragment.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/javaAC5896305463821244303/testRdd.fragment.adam/_common_metadata
/tmp/adamTestMvn1aEve53/javaAC5896305463821244303/testRdd.fragment.adam/_references.avro
/tmp/adamTestMvn1aEve53/javaAC5896305463821244303/testRdd.fragment.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/javaAC5896305463821244303/testRdd.fragment.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/javaAC5896305463821244303/testRdd.fragment.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite6865475164239076323
/tmp/adamTestMvn1aEve53/1596758858826-0
/tmp/adamTestMvn1aEve53/1596758858826-0/.test.gvcf.vcf.crc
/tmp/adamTestMvn1aEve53/1596758858826-0/test.gvcf.vcf
/tmp/adamTestMvn1aEve53/TempSuite5434960504846759902.fq
/tmp/adamTestMvn1aEve53/TempSuite5434960504846759902.fq/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite5434960504846759902.fq/.part-00000.crc
/tmp/adamTestMvn1aEve53/TempSuite5434960504846759902.fq/part-00000
/tmp/adamTestMvn1aEve53/TempSuite5434960504846759902.fq/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite6577939890102397936
/tmp/adamTestMvn1aEve53/ReadDatasetSuite6373473305462536406.fastq
/tmp/adamTestMvn1aEve53/ReadDatasetSuite6373473305462536406.fastq/.part-00001.crc
/tmp/adamTestMvn1aEve53/ReadDatasetSuite6373473305462536406.fastq/.part-00003.crc
/tmp/adamTestMvn1aEve53/ReadDatasetSuite6373473305462536406.fastq/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/ReadDatasetSuite6373473305462536406.fastq/part-00003
/tmp/adamTestMvn1aEve53/ReadDatasetSuite6373473305462536406.fastq/.part-00000.crc
/tmp/adamTestMvn1aEve53/ReadDatasetSuite6373473305462536406.fastq/part-00000
/tmp/adamTestMvn1aEve53/ReadDatasetSuite6373473305462536406.fastq/part-00002
/tmp/adamTestMvn1aEve53/ReadDatasetSuite6373473305462536406.fastq/_SUCCESS
/tmp/adamTestMvn1aEve53/ReadDatasetSuite6373473305462536406.fastq/part-00001
/tmp/adamTestMvn1aEve53/ReadDatasetSuite6373473305462536406.fastq/.part-00002.crc
/tmp/adamTestMvn1aEve53/TempSuite2759580621021338189
/tmp/adamTestMvn1aEve53/.ReadDatasetSuite829012392690927842.fastq.crc
/tmp/adamTestMvn1aEve53/3058675064721256772
/tmp/adamTestMvn1aEve53/3058675064721256772/genotypes.adam
/tmp/adamTestMvn1aEve53/3058675064721256772/genotypes.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/3058675064721256772/genotypes.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/3058675064721256772/genotypes.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/3058675064721256772/genotypes.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/3058675064721256772/genotypes.adam/._header.crc
/tmp/adamTestMvn1aEve53/3058675064721256772/genotypes.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/3058675064721256772/genotypes.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/3058675064721256772/genotypes.adam/_metadata
/tmp/adamTestMvn1aEve53/3058675064721256772/genotypes.adam/_samples.avro
/tmp/adamTestMvn1aEve53/3058675064721256772/genotypes.adam/_common_metadata
/tmp/adamTestMvn1aEve53/3058675064721256772/genotypes.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/3058675064721256772/genotypes.adam/_references.avro
/tmp/adamTestMvn1aEve53/3058675064721256772/genotypes.adam/_header
/tmp/adamTestMvn1aEve53/3058675064721256772/genotypes.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/javaAC8054967125526548148
/tmp/adamTestMvn1aEve53/javaAC8054967125526548148/testRdd.genotype.adam
/tmp/adamTestMvn1aEve53/javaAC8054967125526548148/testRdd.genotype.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/javaAC8054967125526548148/testRdd.genotype.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/javaAC8054967125526548148/testRdd.genotype.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/javaAC8054967125526548148/testRdd.genotype.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/javaAC8054967125526548148/testRdd.genotype.adam/._header.crc
/tmp/adamTestMvn1aEve53/javaAC8054967125526548148/testRdd.genotype.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/javaAC8054967125526548148/testRdd.genotype.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/javaAC8054967125526548148/testRdd.genotype.adam/_metadata
/tmp/adamTestMvn1aEve53/javaAC8054967125526548148/testRdd.genotype.adam/_samples.avro
/tmp/adamTestMvn1aEve53/javaAC8054967125526548148/testRdd.genotype.adam/_common_metadata
/tmp/adamTestMvn1aEve53/javaAC8054967125526548148/testRdd.genotype.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/javaAC8054967125526548148/testRdd.genotype.adam/_references.avro
/tmp/adamTestMvn1aEve53/javaAC8054967125526548148/testRdd.genotype.adam/_header
/tmp/adamTestMvn1aEve53/javaAC8054967125526548148/testRdd.genotype.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6456870594511948826
/tmp/adamTestMvn1aEve53/TempSuite7770166527206109818.fq
/tmp/adamTestMvn1aEve53/TempSuite7770166527206109818.fq/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite7770166527206109818.fq/.part-00000.crc
/tmp/adamTestMvn1aEve53/TempSuite7770166527206109818.fq/part-00000
/tmp/adamTestMvn1aEve53/TempSuite7770166527206109818.fq/_SUCCESS
/tmp/adamTestMvn1aEve53/8641643532563356322
/tmp/adamTestMvn1aEve53/8641643532563356322/.artificial.cram.crc
/tmp/adamTestMvn1aEve53/8641643532563356322/artificial.cram
/tmp/adamTestMvn1aEve53/TempSuite2633310910739369535.bed
/tmp/adamTestMvn1aEve53/TempSuite2633310910739369535.bed/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite2633310910739369535.bed/.part-00000.crc
/tmp/adamTestMvn1aEve53/TempSuite2633310910739369535.bed/part-00000
/tmp/adamTestMvn1aEve53/TempSuite2633310910739369535.bed/_SUCCESS
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite7433512683170543287.adam
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite7433512683170543287.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite7433512683170543287.adam/part-r-00001.gz.parquet
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite7433512683170543287.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite7433512683170543287.adam/part-r-00002.gz.parquet
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite7433512683170543287.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite7433512683170543287.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite7433512683170543287.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite7433512683170543287.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite7433512683170543287.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite7433512683170543287.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite7433512683170543287.adam/_metadata
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite7433512683170543287.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite7433512683170543287.adam/_common_metadata
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite7433512683170543287.adam/_references.avro
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite7433512683170543287.adam/part-r-00003.gz.parquet
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite7433512683170543287.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/unordered.sam5088610870071367688.sam
/tmp/adamTestMvn1aEve53/TempSuite8983324440602435292
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite879761201893795782
/tmp/adamTestMvn1aEve53/reads5282905807691732378
/tmp/adamTestMvn1aEve53/reads5282905807691732378/reads2.fq
/tmp/adamTestMvn1aEve53/reads5282905807691732378/reads2.fq/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/reads5282905807691732378/reads2.fq/.part-00000.crc
/tmp/adamTestMvn1aEve53/reads5282905807691732378/reads2.fq/part-00000
/tmp/adamTestMvn1aEve53/reads5282905807691732378/reads2.fq/_SUCCESS
/tmp/adamTestMvn1aEve53/reads5282905807691732378/reads1.fq
/tmp/adamTestMvn1aEve53/reads5282905807691732378/reads1.fq/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/reads5282905807691732378/reads1.fq/.part-00000.crc
/tmp/adamTestMvn1aEve53/reads5282905807691732378/reads1.fq/part-00000
/tmp/adamTestMvn1aEve53/reads5282905807691732378/reads1.fq/_SUCCESS
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite7923088369970676000
/tmp/adamTestMvn1aEve53/TempSuite8243857778819506020.vcf
/tmp/adamTestMvn1aEve53/TempSuite8243857778819506020.vcf/.part-r-00000.crc
/tmp/adamTestMvn1aEve53/TempSuite8243857778819506020.vcf/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite8243857778819506020.vcf/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite8243857778819506020.vcf/part-r-00000
/tmp/adamTestMvn1aEve53/TempSuite4504604238556745588.adam
/tmp/adamTestMvn1aEve53/TempSuite4504604238556745588.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite4504604238556745588.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite4504604238556745588.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite4504604238556745588.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite4504604238556745588.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite4504604238556745588.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite4504604238556745588.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite4504604238556745588.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite4504604238556745588.adam/_samples.avro
/tmp/adamTestMvn1aEve53/TempSuite4504604238556745588.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite4504604238556745588.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite4504604238556745588.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite4504604238556745588.adam/_header
/tmp/adamTestMvn1aEve53/TempSuite4504604238556745588.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite4625600028150404787
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2318698388480162543.interval_list
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2318698388480162543.interval_list/.part-00001.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2318698388480162543.interval_list/.part-00003.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2318698388480162543.interval_list/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2318698388480162543.interval_list/part-00003
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2318698388480162543.interval_list/.part-00000.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2318698388480162543.interval_list/part-00000
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2318698388480162543.interval_list/part-00002
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2318698388480162543.interval_list/_SUCCESS
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2318698388480162543.interval_list/part-00001
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2318698388480162543.interval_list/.part-00002.crc
/tmp/adamTestMvn1aEve53/TempSuite3359272262832617883.bed
/tmp/adamTestMvn1aEve53/TempSuite3359272262832617883.bed/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite3359272262832617883.bed/.part-00000.crc
/tmp/adamTestMvn1aEve53/TempSuite3359272262832617883.bed/part-00000
/tmp/adamTestMvn1aEve53/TempSuite3359272262832617883.bed/_SUCCESS
/tmp/adamTestMvn1aEve53/7590573157933624939
/tmp/adamTestMvn1aEve53/7590573157933624939/genotypes.lex.adam
/tmp/adamTestMvn1aEve53/7590573157933624939/genotypes.lex.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/7590573157933624939/genotypes.lex.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/7590573157933624939/genotypes.lex.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/7590573157933624939/genotypes.lex.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/7590573157933624939/genotypes.lex.adam/._header.crc
/tmp/adamTestMvn1aEve53/7590573157933624939/genotypes.lex.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/7590573157933624939/genotypes.lex.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/7590573157933624939/genotypes.lex.adam/_metadata
/tmp/adamTestMvn1aEve53/7590573157933624939/genotypes.lex.adam/_samples.avro
/tmp/adamTestMvn1aEve53/7590573157933624939/genotypes.lex.adam/_common_metadata
/tmp/adamTestMvn1aEve53/7590573157933624939/genotypes.lex.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/7590573157933624939/genotypes.lex.adam/_references.avro
/tmp/adamTestMvn1aEve53/7590573157933624939/genotypes.lex.adam/_header
/tmp/adamTestMvn1aEve53/7590573157933624939/genotypes.lex.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/random.vcf3583019350423205757.vcf
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6728722784342637548.gff3
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6728722784342637548.gff3/.part-00001.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6728722784342637548.gff3/.part-00003.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6728722784342637548.gff3/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6728722784342637548.gff3/part-00003
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6728722784342637548.gff3/.part-00000.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6728722784342637548.gff3/part-00000
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6728722784342637548.gff3/part-00002
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6728722784342637548.gff3/_SUCCESS
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6728722784342637548.gff3/part-00001
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6728722784342637548.gff3/.part-00002.crc
/tmp/adamTestMvn1aEve53/TempSuite1357708518752533410.adam
/tmp/adamTestMvn1aEve53/TempSuite1357708518752533410.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite1357708518752533410.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite1357708518752533410.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite1357708518752533410.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite1357708518752533410.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite1357708518752533410.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite1357708518752533410.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite1357708518752533410.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite1357708518752533410.adam/_samples.avro
/tmp/adamTestMvn1aEve53/TempSuite1357708518752533410.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite1357708518752533410.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite1357708518752533410.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite1357708518752533410.adam/_header
/tmp/adamTestMvn1aEve53/TempSuite1357708518752533410.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite2402903130550303326
/tmp/adamTestMvn1aEve53/artificial.cram1976528444615554218.cram
/tmp/adamTestMvn1aEve53/TempSuite6704839420153577974.adam
/tmp/adamTestMvn1aEve53/TempSuite6704839420153577974.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite6704839420153577974.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite6704839420153577974.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite6704839420153577974.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite6704839420153577974.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite6704839420153577974.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite6704839420153577974.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite6704839420153577974.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite6704839420153577974.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite6704839420153577974.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite7270320948517604067.adam
/tmp/adamTestMvn1aEve53/TempSuite7270320948517604067.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite7270320948517604067.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite7270320948517604067.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite7270320948517604067.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite7270320948517604067.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite7270320948517604067.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite7270320948517604067.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite7270320948517604067.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite7270320948517604067.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite7270320948517604067.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite7270320948517604067.adam/_header
/tmp/adamTestMvn1aEve53/TempSuite7270320948517604067.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite5702792481859418544.bed
/tmp/adamTestMvn1aEve53/TempSuite5702792481859418544.bed/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite5702792481859418544.bed/.part-00000.crc
/tmp/adamTestMvn1aEve53/TempSuite5702792481859418544.bed/part-00000
/tmp/adamTestMvn1aEve53/TempSuite5702792481859418544.bed/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite8417878121055060043
/tmp/adamTestMvn1aEve53/TempSuite8134727266750468947.adam
/tmp/adamTestMvn1aEve53/TempSuite8134727266750468947.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite8134727266750468947.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite8134727266750468947.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite8134727266750468947.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite8134727266750468947.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite8134727266750468947.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite8134727266750468947.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite8134727266750468947.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite8134727266750468947.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite8134727266750468947.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite8134727266750468947.adam/_header
/tmp/adamTestMvn1aEve53/TempSuite8134727266750468947.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/ordered.sam4681840622569604576.sam
/tmp/adamTestMvn1aEve53/TempSuite648052126848592696.adam
/tmp/adamTestMvn1aEve53/TempSuite648052126848592696.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite648052126848592696.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite648052126848592696.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite648052126848592696.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite648052126848592696.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite648052126848592696.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite648052126848592696.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite648052126848592696.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite648052126848592696.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite648052126848592696.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite648052126848592696.adam/_header
/tmp/adamTestMvn1aEve53/TempSuite648052126848592696.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite6858782766368758465.adam
/tmp/adamTestMvn1aEve53/TempSuite6858782766368758465.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite6858782766368758465.adam/part-r-00001.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite6858782766368758465.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite6858782766368758465.adam/part-r-00002.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite6858782766368758465.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite6858782766368758465.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite6858782766368758465.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite6858782766368758465.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite6858782766368758465.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite6858782766368758465.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite6858782766368758465.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite6858782766368758465.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite6858782766368758465.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite6858782766368758465.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite6858782766368758465.adam/part-r-00003.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite6858782766368758465.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/unsorted.sam4209619327418039035.sam
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite5902202378755343390.gff3
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite5902202378755343390.gff3/.part-00001.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite5902202378755343390.gff3/.part-00003.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite5902202378755343390.gff3/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite5902202378755343390.gff3/part-00003
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite5902202378755343390.gff3/.part-00000.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite5902202378755343390.gff3/part-00000
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite5902202378755343390.gff3/part-00002
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite5902202378755343390.gff3/_SUCCESS
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite5902202378755343390.gff3/part-00001
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite5902202378755343390.gff3/.part-00002.crc
/tmp/adamTestMvn1aEve53/TempSuite6321519567628255455_2.fq
/tmp/adamTestMvn1aEve53/TempSuite6321519567628255455_2.fq/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite6321519567628255455_2.fq/.part-00000.crc
/tmp/adamTestMvn1aEve53/TempSuite6321519567628255455_2.fq/part-00000
/tmp/adamTestMvn1aEve53/TempSuite6321519567628255455_2.fq/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite3514515813555658007
/tmp/adamTestMvn1aEve53/TempSuite6219713420457473689.bed
/tmp/adamTestMvn1aEve53/TempSuite6219713420457473689.bed/.part-00001.crc
/tmp/adamTestMvn1aEve53/TempSuite6219713420457473689.bed/.part-00003.crc
/tmp/adamTestMvn1aEve53/TempSuite6219713420457473689.bed/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite6219713420457473689.bed/part-00003
/tmp/adamTestMvn1aEve53/TempSuite6219713420457473689.bed/.part-00000.crc
/tmp/adamTestMvn1aEve53/TempSuite6219713420457473689.bed/part-00000
/tmp/adamTestMvn1aEve53/TempSuite6219713420457473689.bed/part-00002
/tmp/adamTestMvn1aEve53/TempSuite6219713420457473689.bed/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite6219713420457473689.bed/part-00001
/tmp/adamTestMvn1aEve53/TempSuite6219713420457473689.bed/.part-00002.crc
/tmp/adamTestMvn1aEve53/TempSuite5692130695163616575.adam
/tmp/adamTestMvn1aEve53/TempSuite5692130695163616575.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite5692130695163616575.adam/part-r-00001.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite5692130695163616575.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite5692130695163616575.adam/part-r-00002.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite5692130695163616575.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite5692130695163616575.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite5692130695163616575.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite5692130695163616575.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite5692130695163616575.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite5692130695163616575.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite5692130695163616575.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite5692130695163616575.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite5692130695163616575.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite5692130695163616575.adam/_samples.avro
/tmp/adamTestMvn1aEve53/TempSuite5692130695163616575.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite5692130695163616575.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite5692130695163616575.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite5692130695163616575.adam/part-r-00003.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite5692130695163616575.adam/_header
/tmp/adamTestMvn1aEve53/TempSuite5692130695163616575.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite6904531183677208344.adam
/tmp/adamTestMvn1aEve53/TempSuite6904531183677208344.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite6904531183677208344.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite6904531183677208344.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite6904531183677208344.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite6904531183677208344.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite6904531183677208344.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite6904531183677208344.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite6904531183677208344.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite6904531183677208344.adam/_samples.avro
/tmp/adamTestMvn1aEve53/TempSuite6904531183677208344.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite6904531183677208344.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite6904531183677208344.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite6904531183677208344.adam/_header
/tmp/adamTestMvn1aEve53/TempSuite6904531183677208344.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/.SliceDatasetSuite8929974872366703965.fasta.crc
/tmp/adamTestMvn1aEve53/.TempSuite4238539854885668860.fq.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite7331157349813976461
/tmp/adamTestMvn1aEve53/unordered.sam4136697930075309796.sam
/tmp/adamTestMvn1aEve53/javaAC9100840071565895190
/tmp/adamTestMvn1aEve53/javaAC9100840071565895190/testRdd.variant.adam
/tmp/adamTestMvn1aEve53/javaAC9100840071565895190/testRdd.variant.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/javaAC9100840071565895190/testRdd.variant.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/javaAC9100840071565895190/testRdd.variant.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/javaAC9100840071565895190/testRdd.variant.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/javaAC9100840071565895190/testRdd.variant.adam/._header.crc
/tmp/adamTestMvn1aEve53/javaAC9100840071565895190/testRdd.variant.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/javaAC9100840071565895190/testRdd.variant.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/javaAC9100840071565895190/testRdd.variant.adam/_metadata
/tmp/adamTestMvn1aEve53/javaAC9100840071565895190/testRdd.variant.adam/_common_metadata
/tmp/adamTestMvn1aEve53/javaAC9100840071565895190/testRdd.variant.adam/_references.avro
/tmp/adamTestMvn1aEve53/javaAC9100840071565895190/testRdd.variant.adam/_header
/tmp/adamTestMvn1aEve53/javaAC9100840071565895190/testRdd.variant.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/4537537079890123806
/tmp/adamTestMvn1aEve53/4537537079890123806/predicate.1.adam
/tmp/adamTestMvn1aEve53/4537537079890123806/predicate.1.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/4537537079890123806/predicate.1.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/4537537079890123806/predicate.1.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/4537537079890123806/predicate.1.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/4537537079890123806/predicate.1.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/4537537079890123806/predicate.1.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/4537537079890123806/predicate.1.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/4537537079890123806/predicate.1.adam/_metadata
/tmp/adamTestMvn1aEve53/4537537079890123806/predicate.1.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/4537537079890123806/predicate.1.adam/_common_metadata
/tmp/adamTestMvn1aEve53/4537537079890123806/predicate.1.adam/_references.avro
/tmp/adamTestMvn1aEve53/4537537079890123806/predicate.1.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/4537537079890123806/predicate.1.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/4537537079890123806/predicate.1.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite728029212391075715
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2355441930730794827.gtf
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2355441930730794827.gtf/.part-00001.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2355441930730794827.gtf/.part-00003.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2355441930730794827.gtf/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2355441930730794827.gtf/part-00003
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2355441930730794827.gtf/.part-00000.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2355441930730794827.gtf/part-00000
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2355441930730794827.gtf/part-00002
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2355441930730794827.gtf/_SUCCESS
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2355441930730794827.gtf/part-00001
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2355441930730794827.gtf/.part-00002.crc
/tmp/adamTestMvn1aEve53/TempSuite7894306201656806264.adam
/tmp/adamTestMvn1aEve53/TempSuite7894306201656806264.adam/.part-00000-2c55704f-d072-4a05-bb5f-e739f15897e9-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite7894306201656806264.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite7894306201656806264.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite7894306201656806264.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite7894306201656806264.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite7894306201656806264.adam/_samples.avro
/tmp/adamTestMvn1aEve53/TempSuite7894306201656806264.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite7894306201656806264.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite7894306201656806264.adam/_header
/tmp/adamTestMvn1aEve53/TempSuite7894306201656806264.adam/part-00000-2c55704f-d072-4a05-bb5f-e739f15897e9-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/6760687352585698567
/tmp/adamTestMvn1aEve53/TempSuite7836821171516845910.adam
/tmp/adamTestMvn1aEve53/TempSuite7836821171516845910.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite7836821171516845910.adam/part-00000-a2fdb61b-38a8-4e8d-a128-1cf473dc2e72-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite7836821171516845910.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite7836821171516845910.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite7836821171516845910.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite7836821171516845910.adam/_samples.avro
/tmp/adamTestMvn1aEve53/TempSuite7836821171516845910.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite7836821171516845910.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite7836821171516845910.adam/_header
/tmp/adamTestMvn1aEve53/TempSuite7836821171516845910.adam/.part-00000-a2fdb61b-38a8-4e8d-a128-1cf473dc2e72-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/4011043788344659071
/tmp/adamTestMvn1aEve53/4011043788344659071/sorted.vcf
/tmp/adamTestMvn1aEve53/4011043788344659071/.sorted.vcf.crc
/tmp/adamTestMvn1aEve53/TempSuite788586063370158535
/tmp/adamTestMvn1aEve53/TempSuite1644221934450037331.adam
/tmp/adamTestMvn1aEve53/TempSuite1644221934450037331.adam/.part-00000-719e63eb-38f7-4f8d-b4c3-e86add3d128d-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite1644221934450037331.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite1644221934450037331.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite1644221934450037331.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite1644221934450037331.adam/part-00000-719e63eb-38f7-4f8d-b4c3-e86add3d128d-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite1644221934450037331.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite1644221934450037331.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite1644221934450037331.adam/_header
/tmp/adamTestMvn1aEve53/.FeatureDatasetFunctionsSuite2927422353197026634.bed.crc
/tmp/adamTestMvn1aEve53/TempSuite8875085819384768373
/tmp/adamTestMvn1aEve53/TempSuite5863686619909488464
/tmp/adamTestMvn1aEve53/1596759437063-0
/tmp/adamTestMvn1aEve53/1596759437063-0/test_single.vcf
/tmp/adamTestMvn1aEve53/1596759437063-0/test.vcf
/tmp/adamTestMvn1aEve53/1596759437063-0/test.vcf/.part-r-00000.crc
/tmp/adamTestMvn1aEve53/1596759437063-0/test.vcf/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/1596759437063-0/test.vcf/_SUCCESS
/tmp/adamTestMvn1aEve53/1596759437063-0/test.vcf/part-r-00000
/tmp/adamTestMvn1aEve53/1596759437063-0/.test_single.vcf.crc
/tmp/adamTestMvn1aEve53/1008592735079278744
/tmp/adamTestMvn1aEve53/1008592735079278744/.unordered.bam.crc
/tmp/adamTestMvn1aEve53/1008592735079278744/unordered.bam
/tmp/adamTestMvn1aEve53/TempSuite1248635869108427209
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite4367042018777886835.bed
/tmp/adamTestMvn1aEve53/1596760124997-0
/tmp/adamTestMvn1aEve53/1596760124997-0/bqsr1-r2.fq
/tmp/adamTestMvn1aEve53/1596760124997-0/bqsr1-r2.fq/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/1596760124997-0/bqsr1-r2.fq/.part-00000.crc
/tmp/adamTestMvn1aEve53/1596760124997-0/bqsr1-r2.fq/part-00000
/tmp/adamTestMvn1aEve53/1596760124997-0/bqsr1-r2.fq/_SUCCESS
/tmp/adamTestMvn1aEve53/1596760124997-0/bqsr1-r1.fq
/tmp/adamTestMvn1aEve53/1596760124997-0/bqsr1-r1.fq/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/1596760124997-0/bqsr1-r1.fq/.part-00000.crc
/tmp/adamTestMvn1aEve53/1596760124997-0/bqsr1-r1.fq/part-00000
/tmp/adamTestMvn1aEve53/1596760124997-0/bqsr1-r1.fq/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite4210213818266791584.adam
/tmp/adamTestMvn1aEve53/TempSuite4210213818266791584.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite4210213818266791584.adam/part-00000-a952a4cd-bbce-4672-ba66-8d73da34f15f-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite4210213818266791584.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite4210213818266791584.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite4210213818266791584.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite4210213818266791584.adam/.part-00000-a952a4cd-bbce-4672-ba66-8d73da34f15f-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite1020495820937433970
/tmp/adamTestMvn1aEve53/TempSuite7264134847979651822
/tmp/adamTestMvn1aEve53/TempSuite16962379450477273.adam
/tmp/adamTestMvn1aEve53/TempSuite16962379450477273.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite16962379450477273.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite16962379450477273.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite16962379450477273.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite16962379450477273.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite16962379450477273.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite16962379450477273.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite16962379450477273.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite16962379450477273.adam/_samples.avro
/tmp/adamTestMvn1aEve53/TempSuite16962379450477273.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite16962379450477273.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite16962379450477273.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite16962379450477273.adam/_header
/tmp/adamTestMvn1aEve53/TempSuite16962379450477273.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite379155459093858009
/tmp/adamTestMvn1aEve53/TempSuite7630193789728870818
/tmp/adamTestMvn1aEve53/random.vcf560952113160915279.vcf
/tmp/adamTestMvn1aEve53/TempSuite6311203010868743925
/tmp/adamTestMvn1aEve53/TempSuite8686781532543527701
/tmp/adamTestMvn1aEve53/TempSuite773677557114680169.adam
/tmp/adamTestMvn1aEve53/TempSuite773677557114680169.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite773677557114680169.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite773677557114680169.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite773677557114680169.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite773677557114680169.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite773677557114680169.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite773677557114680169.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite773677557114680169.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite773677557114680169.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite773677557114680169.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite773677557114680169.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite773677557114680169.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/TempSuite773677557114680169.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/TempSuite773677557114680169.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite8932115996607824865
/tmp/adamTestMvn1aEve53/5808978566256241385
/tmp/adamTestMvn1aEve53/5808978566256241385/tag.sam
/tmp/adamTestMvn1aEve53/5808978566256241385/.tag.sam.crc
/tmp/adamTestMvn1aEve53/TempSuite3834315952221622405.adam
/tmp/adamTestMvn1aEve53/TempSuite3834315952221622405.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite3834315952221622405.adam/._partitionedByStartPos.crc
/tmp/adamTestMvn1aEve53/TempSuite3834315952221622405.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite3834315952221622405.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite3834315952221622405.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite3834315952221622405.adam/_samples.avro
/tmp/adamTestMvn1aEve53/TempSuite3834315952221622405.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite3834315952221622405.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite3834315952221622405.adam/referenceName=1
/tmp/adamTestMvn1aEve53/TempSuite3834315952221622405.adam/referenceName=1/positionBin=0
/tmp/adamTestMvn1aEve53/TempSuite3834315952221622405.adam/referenceName=1/positionBin=0/part-00000-e4061be0-5b8f-4591-9d5c-76f2acea5b20.c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite3834315952221622405.adam/referenceName=1/positionBin=0/.part-00000-e4061be0-5b8f-4591-9d5c-76f2acea5b20.c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite3834315952221622405.adam/_header
/tmp/adamTestMvn1aEve53/TempSuite3834315952221622405.adam/_partitionedByStartPos
/tmp/adamTestMvn1aEve53/TempSuite6421240059772414751.sam
/tmp/adamTestMvn1aEve53/TempSuite7483744915560739204
/tmp/adamTestMvn1aEve53/TempSuite4236974744732775188
/tmp/adamTestMvn1aEve53/2083839182195443695
/tmp/adamTestMvn1aEve53/2083839182195443695/coverage.adam
/tmp/adamTestMvn1aEve53/2083839182195443695/coverage.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/2083839182195443695/coverage.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/2083839182195443695/coverage.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/2083839182195443695/coverage.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/2083839182195443695/coverage.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/2083839182195443695/coverage.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/2083839182195443695/coverage.adam/_metadata
/tmp/adamTestMvn1aEve53/2083839182195443695/coverage.adam/_samples.avro
/tmp/adamTestMvn1aEve53/2083839182195443695/coverage.adam/_common_metadata
/tmp/adamTestMvn1aEve53/2083839182195443695/coverage.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/2083839182195443695/coverage.adam/_references.avro
/tmp/adamTestMvn1aEve53/2083839182195443695/coverage.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite7292125524155588931.bam
/tmp/adamTestMvn1aEve53/TempSuite7305833976739340628
/tmp/adamTestMvn1aEve53/TempSuite4867135185459067836.adam
/tmp/adamTestMvn1aEve53/TempSuite4867135185459067836.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite4867135185459067836.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite4867135185459067836.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite4867135185459067836.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite4867135185459067836.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite4867135185459067836.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite4867135185459067836.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite4867135185459067836.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite4867135185459067836.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite4867135185459067836.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite4867135185459067836.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite4867135185459067836.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/TempSuite4867135185459067836.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/TempSuite4867135185459067836.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/sorted-variants.lex.vcf3162400305684558541.lex.vcf
/tmp/adamTestMvn1aEve53/javaAC3252484252801705083
/tmp/adamTestMvn1aEve53/javaAC3252484252801705083/testRdd.coverage.adam
/tmp/adamTestMvn1aEve53/javaAC3252484252801705083/testRdd.coverage.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvn1aEve53/javaAC3252484252801705083/testRdd.coverage.adam/part-r-00001.gz.parquet
/tmp/adamTestMvn1aEve53/javaAC3252484252801705083/testRdd.coverage.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/javaAC3252484252801705083/testRdd.coverage.adam/part-r-00002.gz.parquet
/tmp/adamTestMvn1aEve53/javaAC3252484252801705083/testRdd.coverage.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/javaAC3252484252801705083/testRdd.coverage.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/javaAC3252484252801705083/testRdd.coverage.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/javaAC3252484252801705083/testRdd.coverage.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/javaAC3252484252801705083/testRdd.coverage.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/javaAC3252484252801705083/testRdd.coverage.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvn1aEve53/javaAC3252484252801705083/testRdd.coverage.adam/_metadata
/tmp/adamTestMvn1aEve53/javaAC3252484252801705083/testRdd.coverage.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvn1aEve53/javaAC3252484252801705083/testRdd.coverage.adam/_samples.avro
/tmp/adamTestMvn1aEve53/javaAC3252484252801705083/testRdd.coverage.adam/_common_metadata
/tmp/adamTestMvn1aEve53/javaAC3252484252801705083/testRdd.coverage.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/javaAC3252484252801705083/testRdd.coverage.adam/_references.avro
/tmp/adamTestMvn1aEve53/javaAC3252484252801705083/testRdd.coverage.adam/part-r-00003.gz.parquet
/tmp/adamTestMvn1aEve53/javaAC3252484252801705083/testRdd.coverage.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite4077879937940184546.adam
/tmp/adamTestMvn1aEve53/TempSuite4077879937940184546.adam/part-00000-cd41fa39-1f77-4e43-b96d-b108b668de70-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite4077879937940184546.adam/part-00001-cd41fa39-1f77-4e43-b96d-b108b668de70-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite4077879937940184546.adam/part-00002-cd41fa39-1f77-4e43-b96d-b108b668de70-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite4077879937940184546.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite4077879937940184546.adam/.part-00002-cd41fa39-1f77-4e43-b96d-b108b668de70-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite4077879937940184546.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite4077879937940184546.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite4077879937940184546.adam/.part-00001-cd41fa39-1f77-4e43-b96d-b108b668de70-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite4077879937940184546.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite4077879937940184546.adam/.part-00000-cd41fa39-1f77-4e43-b96d-b108b668de70-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite4077879937940184546.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite4077879937940184546.adam/_header
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite4549930587296113403
/tmp/adamTestMvn1aEve53/TempSuite431863092659376217
/tmp/adamTestMvn1aEve53/TempSuite1940549446413526741.bam
/tmp/adamTestMvn1aEve53/TempSuite1940549446413526741.bam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite1940549446413526741.bam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite1940549446413526741.bam/.part-r-00000.bam.crc
/tmp/adamTestMvn1aEve53/TempSuite1940549446413526741.bam/part-r-00000.bam
/tmp/adamTestMvn1aEve53/TempSuite7025162008074833230
/tmp/adamTestMvn1aEve53/TempSuite8142855785214182747.adam
/tmp/adamTestMvn1aEve53/TempSuite8142855785214182747.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite8142855785214182747.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite8142855785214182747.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite8142855785214182747.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite8142855785214182747.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite8142855785214182747.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite8142855785214182747.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite8142855785214182747.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite8142855785214182747.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite8142855785214182747.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite8142855785214182747.adam/_header
/tmp/adamTestMvn1aEve53/TempSuite8142855785214182747.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite3099760857602436566
/tmp/adamTestMvn1aEve53/TempSuite2868123585025156650.adam
/tmp/adamTestMvn1aEve53/TempSuite2868123585025156650.adam/part-00002-f4c31272-f1d9-4a9a-9506-152ff186287d-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite2868123585025156650.adam/part-00001-f4c31272-f1d9-4a9a-9506-152ff186287d-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite2868123585025156650.adam/part-00000-f4c31272-f1d9-4a9a-9506-152ff186287d-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite2868123585025156650.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite2868123585025156650.adam/.part-00002-f4c31272-f1d9-4a9a-9506-152ff186287d-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite2868123585025156650.adam/.part-00001-f4c31272-f1d9-4a9a-9506-152ff186287d-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite2868123585025156650.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite2868123585025156650.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite2868123585025156650.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite2868123585025156650.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite2868123585025156650.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite2868123585025156650.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/TempSuite2868123585025156650.adam/.part-00000-f4c31272-f1d9-4a9a-9506-152ff186287d-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite2868123585025156650.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/TempSuite3586295251960155754reads12.sam_2
/tmp/adamTestMvn1aEve53/1306190502128896532
/tmp/adamTestMvn1aEve53/1306190502128896532/variants.lex.adam
/tmp/adamTestMvn1aEve53/1306190502128896532/variants.lex.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/1306190502128896532/variants.lex.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/1306190502128896532/variants.lex.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/1306190502128896532/variants.lex.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/1306190502128896532/variants.lex.adam/._header.crc
/tmp/adamTestMvn1aEve53/1306190502128896532/variants.lex.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/1306190502128896532/variants.lex.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/1306190502128896532/variants.lex.adam/_metadata
/tmp/adamTestMvn1aEve53/1306190502128896532/variants.lex.adam/_common_metadata
/tmp/adamTestMvn1aEve53/1306190502128896532/variants.lex.adam/_references.avro
/tmp/adamTestMvn1aEve53/1306190502128896532/variants.lex.adam/_header
/tmp/adamTestMvn1aEve53/1306190502128896532/variants.lex.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite3209661606899121005.adam
/tmp/adamTestMvn1aEve53/TempSuite3209661606899121005.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite3209661606899121005.adam/part-r-00001.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite3209661606899121005.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite3209661606899121005.adam/part-r-00002.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite3209661606899121005.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite3209661606899121005.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite3209661606899121005.adam/_partitionMap.avro
/tmp/adamTestMvn1aEve53/TempSuite3209661606899121005.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite3209661606899121005.adam/._partitionMap.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite3209661606899121005.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite3209661606899121005.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite3209661606899121005.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite3209661606899121005.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite3209661606899121005.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite3209661606899121005.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite3209661606899121005.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite3209661606899121005.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite3209661606899121005.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite3209661606899121005.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/TempSuite3209661606899121005.adam/part-r-00003.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite3209661606899121005.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/TempSuite3209661606899121005.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite1816080950452000090.adam
/tmp/adamTestMvn1aEve53/TempSuite1816080950452000090.adam/.part-00002-f4fba0f1-a62d-4d98-8bcc-931d8aa85037-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite1816080950452000090.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite1816080950452000090.adam/.part-00001-f4fba0f1-a62d-4d98-8bcc-931d8aa85037-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite1816080950452000090.adam/part-00000-f4fba0f1-a62d-4d98-8bcc-931d8aa85037-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite1816080950452000090.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite1816080950452000090.adam/.part-00000-f4fba0f1-a62d-4d98-8bcc-931d8aa85037-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite1816080950452000090.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite1816080950452000090.adam/part-00001-f4fba0f1-a62d-4d98-8bcc-931d8aa85037-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite1816080950452000090.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite1816080950452000090.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite1816080950452000090.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite1816080950452000090.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/TempSuite1816080950452000090.adam/part-00002-f4fba0f1-a62d-4d98-8bcc-931d8aa85037-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite1816080950452000090.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/reads128654572228559390831
/tmp/adamTestMvn1aEve53/reads128654572228559390831/reads12.fq
/tmp/adamTestMvn1aEve53/reads128654572228559390831/reads12.fq/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/reads128654572228559390831/reads12.fq/.part-00000.crc
/tmp/adamTestMvn1aEve53/reads128654572228559390831/reads12.fq/part-00000
/tmp/adamTestMvn1aEve53/reads128654572228559390831/reads12.fq/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite324448035657394953
/tmp/adamTestMvn1aEve53/TempSuite3514515813555658007.adam
/tmp/adamTestMvn1aEve53/TempSuite3514515813555658007.adam/part-00003-9494520f-fc34-48ee-b6db-ef4e427248e4-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite3514515813555658007.adam/.part-00003-9494520f-fc34-48ee-b6db-ef4e427248e4-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite3514515813555658007.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite3514515813555658007.adam/.part-00000-9494520f-fc34-48ee-b6db-ef4e427248e4-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite3514515813555658007.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite3514515813555658007.adam/part-00000-9494520f-fc34-48ee-b6db-ef4e427248e4-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite3514515813555658007.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite3514515813555658007.adam/_samples.avro
/tmp/adamTestMvn1aEve53/TempSuite3514515813555658007.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite3514515813555658007.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite3514515813555658007.adam/.part-00005-9494520f-fc34-48ee-b6db-ef4e427248e4-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite3514515813555658007.adam/part-00005-9494520f-fc34-48ee-b6db-ef4e427248e4-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/SliceDatasetSuite3708153228324631881
/tmp/adamTestMvn1aEve53/TempSuite5109225282494132708
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2006183066780262254.narrowPeak
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2006183066780262254.narrowPeak/.part-00001.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2006183066780262254.narrowPeak/.part-00003.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2006183066780262254.narrowPeak/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2006183066780262254.narrowPeak/part-00003
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2006183066780262254.narrowPeak/.part-00000.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2006183066780262254.narrowPeak/part-00000
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2006183066780262254.narrowPeak/part-00002
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2006183066780262254.narrowPeak/_SUCCESS
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2006183066780262254.narrowPeak/part-00001
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2006183066780262254.narrowPeak/.part-00002.crc
/tmp/adamTestMvn1aEve53/TempSuite8198630832854557060_2.fq
/tmp/adamTestMvn1aEve53/TempSuite7114424662366208336
/tmp/adamTestMvn1aEve53/TempSuite565598505097850196
/tmp/adamTestMvn1aEve53/TempSuite3386759355009636835.adam
/tmp/adamTestMvn1aEve53/TempSuite3386759355009636835.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite3386759355009636835.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite3386759355009636835.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite3386759355009636835.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite3386759355009636835.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite3386759355009636835.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite3386759355009636835.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite3386759355009636835.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite3386759355009636835.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite3386759355009636835.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite3386759355009636835.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite3386759355009636835.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/TempSuite3386759355009636835.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/TempSuite3386759355009636835.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/sample1.queryname.sam8008211110002686434.queryname.sam
/tmp/adamTestMvn1aEve53/TempSuite8257449296108674713.adam
/tmp/adamTestMvn1aEve53/TempSuite8257449296108674713.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite8257449296108674713.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite8257449296108674713.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite8257449296108674713.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite8257449296108674713.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite8257449296108674713.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite8257449296108674713.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite8257449296108674713.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite8257449296108674713.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite8257449296108674713.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite8257449296108674713.adam/_header
/tmp/adamTestMvn1aEve53/TempSuite8257449296108674713.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite4819768647821095151_2.fq
/tmp/adamTestMvn1aEve53/TempSuite7778406626538131822.adam
/tmp/adamTestMvn1aEve53/TempSuite7778406626538131822.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite7778406626538131822.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite7778406626538131822.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite7778406626538131822.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite7778406626538131822.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite7778406626538131822.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite7778406626538131822.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite7778406626538131822.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite7778406626538131822.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite7778406626538131822.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite7778406626538131822.adam/_header
/tmp/adamTestMvn1aEve53/TempSuite7778406626538131822.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite3296547605297425366.adam
/tmp/adamTestMvn1aEve53/TempSuite3296547605297425366.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite3296547605297425366.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite3296547605297425366.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite3296547605297425366.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite3296547605297425366.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite3296547605297425366.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite3296547605297425366.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite3296547605297425366.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite3296547605297425366.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite3296547605297425366.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite3296547605297425366.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite3296547605297425366.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/TempSuite3296547605297425366.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/TempSuite3296547605297425366.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite6196810102154103775
/tmp/adamTestMvn1aEve53/TempSuite6321519567628255455
/tmp/adamTestMvn1aEve53/sorted-variants.lex.vcf3133410249337971622.lex.vcf
/tmp/adamTestMvn1aEve53/TempSuite574421886474054689.adam
/tmp/adamTestMvn1aEve53/TempSuite574421886474054689.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite574421886474054689.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite574421886474054689.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite574421886474054689.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite574421886474054689.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite574421886474054689.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite574421886474054689.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite574421886474054689.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite574421886474054689.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite574421886474054689.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite574421886474054689.adam/_header
/tmp/adamTestMvn1aEve53/TempSuite574421886474054689.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/unordered.sam5619023631018127384.sam
/tmp/adamTestMvn1aEve53/TempSuite2626257493836480247
/tmp/adamTestMvn1aEve53/TempSuite6847458077544774899.adam
/tmp/adamTestMvn1aEve53/TempSuite6847458077544774899.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite6847458077544774899.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite6847458077544774899.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite6847458077544774899.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite6847458077544774899.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite6847458077544774899.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite6847458077544774899.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite6847458077544774899.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite6847458077544774899.adam/_samples.avro
/tmp/adamTestMvn1aEve53/TempSuite6847458077544774899.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite6847458077544774899.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite6847458077544774899.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite6847458077544774899.adam/_header
/tmp/adamTestMvn1aEve53/TempSuite6847458077544774899.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite5441185273931244321.bed
/tmp/adamTestMvn1aEve53/TempSuite5441185273931244321.bed/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite5441185273931244321.bed/.part-00000.crc
/tmp/adamTestMvn1aEve53/TempSuite5441185273931244321.bed/part-00000
/tmp/adamTestMvn1aEve53/TempSuite5441185273931244321.bed/_SUCCESS
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite8911151029430356901
/tmp/adamTestMvn1aEve53/TempSuite8102610516001389077.adam
/tmp/adamTestMvn1aEve53/TempSuite8102610516001389077.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite8102610516001389077.adam/part-r-00001.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite8102610516001389077.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite8102610516001389077.adam/part-r-00002.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite8102610516001389077.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite8102610516001389077.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite8102610516001389077.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite8102610516001389077.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite8102610516001389077.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite8102610516001389077.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite8102610516001389077.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite8102610516001389077.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite8102610516001389077.adam/_samples.avro
/tmp/adamTestMvn1aEve53/TempSuite8102610516001389077.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite8102610516001389077.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite8102610516001389077.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite8102610516001389077.adam/part-r-00003.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite8102610516001389077.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite3966361436744218628.sam
/tmp/adamTestMvn1aEve53/TempSuite3966361436744218628.sam/part-r-00000.sam
/tmp/adamTestMvn1aEve53/TempSuite3966361436744218628.sam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite3966361436744218628.sam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite3966361436744218628.sam/.part-r-00000.sam.crc
/tmp/adamTestMvn1aEve53/TempSuite2032842050746472488.adam
/tmp/adamTestMvn1aEve53/TempSuite2032842050746472488.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite2032842050746472488.adam/part-r-00001.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite2032842050746472488.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite2032842050746472488.adam/part-r-00002.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite2032842050746472488.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite2032842050746472488.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite2032842050746472488.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite2032842050746472488.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite2032842050746472488.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite2032842050746472488.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite2032842050746472488.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite2032842050746472488.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite2032842050746472488.adam/_samples.avro
/tmp/adamTestMvn1aEve53/TempSuite2032842050746472488.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite2032842050746472488.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite2032842050746472488.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite2032842050746472488.adam/part-r-00003.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite2032842050746472488.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2340738153887234465.bed
/tmp/adamTestMvn1aEve53/TempSuite6239978590150247134.adam
/tmp/adamTestMvn1aEve53/TempSuite6239978590150247134.adam/.part-00001-598457d0-5d85-4b5c-97a3-e52f18df8222-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite6239978590150247134.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite6239978590150247134.adam/part-00002-598457d0-5d85-4b5c-97a3-e52f18df8222-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite6239978590150247134.adam/part-00000-598457d0-5d85-4b5c-97a3-e52f18df8222-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite6239978590150247134.adam/.part-00000-598457d0-5d85-4b5c-97a3-e52f18df8222-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite6239978590150247134.adam/part-00001-598457d0-5d85-4b5c-97a3-e52f18df8222-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite6239978590150247134.adam/.part-00002-598457d0-5d85-4b5c-97a3-e52f18df8222-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite6239978590150247134.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite6239978590150247134.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite6239978590150247134.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite5058381613513422206.adam
/tmp/adamTestMvn1aEve53/TempSuite5058381613513422206.adam/.part-00000-ad45c7a2-8c31-4326-ba4f-7eb7b274f62e-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite5058381613513422206.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite5058381613513422206.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite5058381613513422206.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite5058381613513422206.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite5058381613513422206.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite5058381613513422206.adam/part-00000-ad45c7a2-8c31-4326-ba4f-7eb7b274f62e-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite5058381613513422206.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite5058381613513422206.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/TempSuite5058381613513422206.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/gencode.v7.annotation.trunc10.bed6789531462704943689.v7.annotation.trunc10.bed
/tmp/adamTestMvn1aEve53/TempSuite8106172886362463476
/tmp/adamTestMvn1aEve53/TempSuite1854670060819837099.adam
/tmp/adamTestMvn1aEve53/TempSuite1854670060819837099.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite1854670060819837099.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite1854670060819837099.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite1854670060819837099.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite1854670060819837099.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite1854670060819837099.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite1854670060819837099.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite1854670060819837099.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite1854670060819837099.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite1854670060819837099.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite1854670060819837099.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite1854670060819837099.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/TempSuite1854670060819837099.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/TempSuite1854670060819837099.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite8875085819384768373.adam
/tmp/adamTestMvn1aEve53/TempSuite8875085819384768373.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite8875085819384768373.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite8875085819384768373.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite8875085819384768373.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite8875085819384768373.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite8875085819384768373.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite8875085819384768373.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite8875085819384768373.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite8875085819384768373.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite8875085819384768373.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite8875085819384768373.adam/_header
/tmp/adamTestMvn1aEve53/TempSuite8875085819384768373.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/unordered.sam1552129590059339105.sam
/tmp/adamTestMvn1aEve53/TempSuite563555183014033224
/tmp/adamTestMvn1aEve53/TempSuite906143045530263733_1.fq
/tmp/adamTestMvn1aEve53/TempSuite906143045530263733_1.fq/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite906143045530263733_1.fq/.part-00000.crc
/tmp/adamTestMvn1aEve53/TempSuite906143045530263733_1.fq/part-00000
/tmp/adamTestMvn1aEve53/TempSuite906143045530263733_1.fq/_SUCCESS
/tmp/adamTestMvn1aEve53/ReadDatasetSuite6066395022384373056.adam
/tmp/adamTestMvn1aEve53/ReadDatasetSuite6066395022384373056.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvn1aEve53/ReadDatasetSuite6066395022384373056.adam/part-r-00001.gz.parquet
/tmp/adamTestMvn1aEve53/ReadDatasetSuite6066395022384373056.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/ReadDatasetSuite6066395022384373056.adam/part-r-00002.gz.parquet
/tmp/adamTestMvn1aEve53/ReadDatasetSuite6066395022384373056.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/ReadDatasetSuite6066395022384373056.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/ReadDatasetSuite6066395022384373056.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/ReadDatasetSuite6066395022384373056.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/ReadDatasetSuite6066395022384373056.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/ReadDatasetSuite6066395022384373056.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvn1aEve53/ReadDatasetSuite6066395022384373056.adam/_metadata
/tmp/adamTestMvn1aEve53/ReadDatasetSuite6066395022384373056.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvn1aEve53/ReadDatasetSuite6066395022384373056.adam/_common_metadata
/tmp/adamTestMvn1aEve53/ReadDatasetSuite6066395022384373056.adam/_references.avro
/tmp/adamTestMvn1aEve53/ReadDatasetSuite6066395022384373056.adam/part-r-00003.gz.parquet
/tmp/adamTestMvn1aEve53/ReadDatasetSuite6066395022384373056.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite3455214934721113314.adam
/tmp/adamTestMvn1aEve53/TempSuite3455214934721113314.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite3455214934721113314.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite3455214934721113314.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite3455214934721113314.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite3455214934721113314.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite3455214934721113314.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite3455214934721113314.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite3455214934721113314.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite3455214934721113314.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite3455214934721113314.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite3455214934721113314.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite3455214934721113314.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/TempSuite3455214934721113314.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/TempSuite3455214934721113314.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite6961139575333042069
/tmp/adamTestMvn1aEve53/TempSuite4925040575087060157
/tmp/adamTestMvn1aEve53/bqsr1.sam8622305371613626724.sam
/tmp/adamTestMvn1aEve53/TempSuite390623497840344803.adam
/tmp/adamTestMvn1aEve53/TempSuite390623497840344803.adam/part-00000-f01c98f7-94d3-42a9-9a72-aaeed4391b73-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite390623497840344803.adam/.part-00002-f01c98f7-94d3-42a9-9a72-aaeed4391b73-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite390623497840344803.adam/.part-00001-f01c98f7-94d3-42a9-9a72-aaeed4391b73-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite390623497840344803.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite390623497840344803.adam/part-00001-f01c98f7-94d3-42a9-9a72-aaeed4391b73-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite390623497840344803.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite390623497840344803.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite390623497840344803.adam/.part-00000-f01c98f7-94d3-42a9-9a72-aaeed4391b73-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite390623497840344803.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite390623497840344803.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite390623497840344803.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite390623497840344803.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/TempSuite390623497840344803.adam/part-00002-f01c98f7-94d3-42a9-9a72-aaeed4391b73-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite390623497840344803.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/TempSuite8106172886362463476.bam
/tmp/adamTestMvn1aEve53/TempSuite8106172886362463476.bam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite8106172886362463476.bam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite8106172886362463476.bam/.part-r-00000.bam.crc
/tmp/adamTestMvn1aEve53/TempSuite8106172886362463476.bam/part-r-00000.bam
/tmp/adamTestMvn1aEve53/TempSuite1795100352682491134
/tmp/adamTestMvn1aEve53/TempSuite9056739509470045785.adam
/tmp/adamTestMvn1aEve53/TempSuite9056739509470045785.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite9056739509470045785.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite9056739509470045785.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite9056739509470045785.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite9056739509470045785.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite9056739509470045785.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite9056739509470045785.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite9056739509470045785.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite9056739509470045785.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite9056739509470045785.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/SliceDatasetSuite5033363039490720434
/tmp/adamTestMvn1aEve53/TempSuite6858782766368758465
/tmp/adamTestMvn1aEve53/TempSuite550681168842274096
/tmp/adamTestMvn1aEve53/TempSuite5458601640413223943.bed
/tmp/adamTestMvn1aEve53/TempSuite5458601640413223943.bed/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite5458601640413223943.bed/.part-00000.crc
/tmp/adamTestMvn1aEve53/TempSuite5458601640413223943.bed/part-00000
/tmp/adamTestMvn1aEve53/TempSuite5458601640413223943.bed/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite1874318147631355997
/tmp/adamTestMvn1aEve53/TempSuite3637008266765463008
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite4396471450038426932.interval_list
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite4396471450038426932.interval_list/.part-00001.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite4396471450038426932.interval_list/.part-00003.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite4396471450038426932.interval_list/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite4396471450038426932.interval_list/part-00003
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite4396471450038426932.interval_list/.part-00000.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite4396471450038426932.interval_list/part-00000
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite4396471450038426932.interval_list/part-00002
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite4396471450038426932.interval_list/_SUCCESS
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite4396471450038426932.interval_list/part-00001
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite4396471450038426932.interval_list/.part-00002.crc
/tmp/adamTestMvn1aEve53/TempSuite6644307989407038624.adam
/tmp/adamTestMvn1aEve53/TempSuite6644307989407038624.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite6644307989407038624.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite6644307989407038624.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite6644307989407038624.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite6644307989407038624.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite6644307989407038624.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite6644307989407038624.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite6644307989407038624.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite6644307989407038624.adam/_samples.avro
/tmp/adamTestMvn1aEve53/TempSuite6644307989407038624.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite6644307989407038624.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite6644307989407038624.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite6644307989407038624.adam/_header
/tmp/adamTestMvn1aEve53/TempSuite6644307989407038624.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite6188666478531724382.bed
/tmp/adamTestMvn1aEve53/TempSuite6188666478531724382.bed/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite6188666478531724382.bed/.part-00000.crc
/tmp/adamTestMvn1aEve53/TempSuite6188666478531724382.bed/part-00000
/tmp/adamTestMvn1aEve53/TempSuite6188666478531724382.bed/_SUCCESS
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite428695120596514322
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite879761201893795782.gtf
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite879761201893795782.gtf/.part-00001.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite879761201893795782.gtf/.part-00003.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite879761201893795782.gtf/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite879761201893795782.gtf/part-00003
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite879761201893795782.gtf/.part-00000.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite879761201893795782.gtf/part-00000
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite879761201893795782.gtf/part-00002
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite879761201893795782.gtf/_SUCCESS
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite879761201893795782.gtf/part-00001
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite879761201893795782.gtf/.part-00002.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite1664519968713803295.narrowPeak
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite1664519968713803295.narrowPeak/.part-00001.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite1664519968713803295.narrowPeak/.part-00003.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite1664519968713803295.narrowPeak/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite1664519968713803295.narrowPeak/part-00003
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite1664519968713803295.narrowPeak/.part-00000.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite1664519968713803295.narrowPeak/part-00000
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite1664519968713803295.narrowPeak/part-00002
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite1664519968713803295.narrowPeak/_SUCCESS
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite1664519968713803295.narrowPeak/part-00001
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite1664519968713803295.narrowPeak/.part-00002.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite7923088369970676000.bed
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite7923088369970676000.bed/.part-00001.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite7923088369970676000.bed/.part-00003.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite7923088369970676000.bed/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite7923088369970676000.bed/part-00003
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite7923088369970676000.bed/.part-00000.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite7923088369970676000.bed/part-00000
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite7923088369970676000.bed/part-00002
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite7923088369970676000.bed/_SUCCESS
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite7923088369970676000.bed/part-00001
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite7923088369970676000.bed/.part-00002.crc
/tmp/adamTestMvn1aEve53/ReadDatasetSuite5885552654863381561.adam
/tmp/adamTestMvn1aEve53/ReadDatasetSuite5885552654863381561.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvn1aEve53/ReadDatasetSuite5885552654863381561.adam/part-r-00001.gz.parquet
/tmp/adamTestMvn1aEve53/ReadDatasetSuite5885552654863381561.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/ReadDatasetSuite5885552654863381561.adam/part-r-00002.gz.parquet
/tmp/adamTestMvn1aEve53/ReadDatasetSuite5885552654863381561.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/ReadDatasetSuite5885552654863381561.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/ReadDatasetSuite5885552654863381561.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/ReadDatasetSuite5885552654863381561.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/ReadDatasetSuite5885552654863381561.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/ReadDatasetSuite5885552654863381561.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvn1aEve53/ReadDatasetSuite5885552654863381561.adam/_metadata
/tmp/adamTestMvn1aEve53/ReadDatasetSuite5885552654863381561.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvn1aEve53/ReadDatasetSuite5885552654863381561.adam/_common_metadata
/tmp/adamTestMvn1aEve53/ReadDatasetSuite5885552654863381561.adam/_references.avro
/tmp/adamTestMvn1aEve53/ReadDatasetSuite5885552654863381561.adam/part-r-00003.gz.parquet
/tmp/adamTestMvn1aEve53/ReadDatasetSuite5885552654863381561.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/5901372724327954288
/tmp/adamTestMvn1aEve53/5901372724327954288/sorted.vcf
/tmp/adamTestMvn1aEve53/5901372724327954288/.sorted.vcf.crc
/tmp/adamTestMvn1aEve53/TempSuite5863686619909488464fragments.adam
/tmp/adamTestMvn1aEve53/TempSuite5863686619909488464fragments.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite5863686619909488464fragments.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite5863686619909488464fragments.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite5863686619909488464fragments.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite5863686619909488464fragments.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite5863686619909488464fragments.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite5863686619909488464fragments.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite5863686619909488464fragments.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite5863686619909488464fragments.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite5863686619909488464fragments.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite5863686619909488464fragments.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite5863686619909488464fragments.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/TempSuite5863686619909488464fragments.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/TempSuite5863686619909488464fragments.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite5837046735927954575
/tmp/adamTestMvn1aEve53/TempSuite3296547605297425366
/tmp/adamTestMvn1aEve53/719103996200154751
/tmp/adamTestMvn1aEve53/719103996200154751/.sorted-variants.lex.vcf.crc
/tmp/adamTestMvn1aEve53/719103996200154751/sorted-variants.lex.vcf
/tmp/adamTestMvn1aEve53/40378110861376009
/tmp/adamTestMvn1aEve53/40378110861376009/unordered.sam
/tmp/adamTestMvn1aEve53/40378110861376009/.unordered.sam.crc
/tmp/adamTestMvn1aEve53/TempSuite4867135185459067836
/tmp/adamTestMvn1aEve53/SequenceDatasetSuite3301860964827075203
/tmp/adamTestMvn1aEve53/3695474128903270691
/tmp/adamTestMvn1aEve53/3695474128903270691/bqsr1.vcf.bgz
/tmp/adamTestMvn1aEve53/3695474128903270691/bqsr1.vcf.bgz/.part-r-00000.bgz.crc
/tmp/adamTestMvn1aEve53/3695474128903270691/bqsr1.vcf.bgz/.part-r-00003.bgz.crc
/tmp/adamTestMvn1aEve53/3695474128903270691/bqsr1.vcf.bgz/part-r-00000.bgz
/tmp/adamTestMvn1aEve53/3695474128903270691/bqsr1.vcf.bgz/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/3695474128903270691/bqsr1.vcf.bgz/.part-r-00001.bgz.crc
/tmp/adamTestMvn1aEve53/3695474128903270691/bqsr1.vcf.bgz/_SUCCESS
/tmp/adamTestMvn1aEve53/3695474128903270691/bqsr1.vcf.bgz/part-r-00001.bgz
/tmp/adamTestMvn1aEve53/3695474128903270691/bqsr1.vcf.bgz/part-r-00003.bgz
/tmp/adamTestMvn1aEve53/3695474128903270691/bqsr1.vcf.bgz/part-r-00002.bgz
/tmp/adamTestMvn1aEve53/3695474128903270691/bqsr1.vcf.bgz/.part-r-00002.bgz.crc
/tmp/adamTestMvn1aEve53/TempSuite3489393597166324413.adam
/tmp/adamTestMvn1aEve53/TempSuite3489393597166324413.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite3489393597166324413.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite3489393597166324413.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite3489393597166324413.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite3489393597166324413.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite3489393597166324413.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite3489393597166324413.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite3489393597166324413.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite3489393597166324413.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite3489393597166324413.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite3489393597166324413.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite3489393597166324413.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/TempSuite3489393597166324413.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/TempSuite3489393597166324413.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite8243857778819506020
/tmp/adamTestMvn1aEve53/TempSuite6369085887598243136
/tmp/adamTestMvn1aEve53/TempSuite6028597637225071552
/tmp/adamTestMvn1aEve53/TempSuite6589874744829215841.bed
/tmp/adamTestMvn1aEve53/TempSuite6589874744829215841.bed/.part-00001.crc
/tmp/adamTestMvn1aEve53/TempSuite6589874744829215841.bed/.part-00003.crc
/tmp/adamTestMvn1aEve53/TempSuite6589874744829215841.bed/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite6589874744829215841.bed/part-00003
/tmp/adamTestMvn1aEve53/TempSuite6589874744829215841.bed/.part-00000.crc
/tmp/adamTestMvn1aEve53/TempSuite6589874744829215841.bed/part-00000
/tmp/adamTestMvn1aEve53/TempSuite6589874744829215841.bed/part-00002
/tmp/adamTestMvn1aEve53/TempSuite6589874744829215841.bed/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite6589874744829215841.bed/part-00001
/tmp/adamTestMvn1aEve53/TempSuite6589874744829215841.bed/.part-00002.crc
/tmp/adamTestMvn1aEve53/TempSuite2585661379905099765
/tmp/adamTestMvn1aEve53/TempSuite3288413006118694050.adam
/tmp/adamTestMvn1aEve53/TempSuite3288413006118694050.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite3288413006118694050.adam/part-r-00001.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite3288413006118694050.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite3288413006118694050.adam/part-r-00002.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite3288413006118694050.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite3288413006118694050.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite3288413006118694050.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite3288413006118694050.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite3288413006118694050.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite3288413006118694050.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite3288413006118694050.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite3288413006118694050.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite3288413006118694050.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite3288413006118694050.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite3288413006118694050.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite3288413006118694050.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite3288413006118694050.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/TempSuite3288413006118694050.adam/part-r-00003.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite3288413006118694050.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/TempSuite3288413006118694050.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite87125690128442850
/tmp/adamTestMvn1aEve53/1382172700548210951
/tmp/adamTestMvn1aEve53/1382172700548210951/unordered.sam
/tmp/adamTestMvn1aEve53/1382172700548210951/.unordered.sam.crc
/tmp/adamTestMvn1aEve53/TempSuite1632344649827735882.adam
/tmp/adamTestMvn1aEve53/TempSuite1632344649827735882.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite1632344649827735882.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite1632344649827735882.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite1632344649827735882.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite1632344649827735882.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite1632344649827735882.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite1632344649827735882.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite1632344649827735882.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite1632344649827735882.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite1632344649827735882.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite1632344649827735882.adam/_header
/tmp/adamTestMvn1aEve53/TempSuite1632344649827735882.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite571060105624091593
/tmp/adamTestMvn1aEve53/TempSuite3249307188802361368
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2731256703022935247
/tmp/adamTestMvn1aEve53/TempSuite8686781532543527701.adam
/tmp/adamTestMvn1aEve53/TempSuite8686781532543527701.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite8686781532543527701.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite8686781532543527701.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite8686781532543527701.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite8686781532543527701.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite8686781532543527701.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite8686781532543527701.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite8686781532543527701.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite8686781532543527701.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite8686781532543527701.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite8686781532543527701.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite8686781532543527701.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/TempSuite8686781532543527701.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/TempSuite8686781532543527701.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite5527711198772477266
/tmp/adamTestMvn1aEve53/TempSuite4236974744732775188.adam
/tmp/adamTestMvn1aEve53/TempSuite4236974744732775188.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite4236974744732775188.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite4236974744732775188.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite4236974744732775188.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite4236974744732775188.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite4236974744732775188.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite4236974744732775188.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite4236974744732775188.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite4236974744732775188.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite4236974744732775188.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite1855280556002737380.adam
/tmp/adamTestMvn1aEve53/TempSuite1855280556002737380.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite1855280556002737380.adam/part-r-00001.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite1855280556002737380.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite1855280556002737380.adam/part-r-00002.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite1855280556002737380.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite1855280556002737380.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite1855280556002737380.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite1855280556002737380.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite1855280556002737380.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite1855280556002737380.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite1855280556002737380.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite1855280556002737380.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite1855280556002737380.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite1855280556002737380.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite1855280556002737380.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite1855280556002737380.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite1855280556002737380.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/TempSuite1855280556002737380.adam/part-r-00003.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite1855280556002737380.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/TempSuite1855280556002737380.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/bqsr18855184860551985134
/tmp/adamTestMvn1aEve53/bqsr18855184860551985134/.bqsr1.sam.crc
/tmp/adamTestMvn1aEve53/bqsr18855184860551985134/bqsr1.sam
/tmp/adamTestMvn1aEve53/TempSuite1357708518752533410
/tmp/adamTestMvn1aEve53/TempSuite1516053431153724659.adam
/tmp/adamTestMvn1aEve53/TempSuite1516053431153724659.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite1516053431153724659.adam/part-r-00001.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite1516053431153724659.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite1516053431153724659.adam/part-r-00002.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite1516053431153724659.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite1516053431153724659.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite1516053431153724659.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite1516053431153724659.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite1516053431153724659.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite1516053431153724659.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite1516053431153724659.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite1516053431153724659.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite1516053431153724659.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite1516053431153724659.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite1516053431153724659.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite1516053431153724659.adam/part-r-00003.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite1516053431153724659.adam/_header
/tmp/adamTestMvn1aEve53/TempSuite1516053431153724659.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite6188666478531724382
/tmp/adamTestMvn1aEve53/ReadDatasetSuite6373473305462536406
/tmp/adamTestMvn1aEve53/TempSuite8714701125336182657
/tmp/adamTestMvn1aEve53/sorted-variants.vcf2801267665947399891.vcf
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6839487989705821996.bed
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6839487989705821996.bed/.part-00001.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6839487989705821996.bed/.part-00003.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6839487989705821996.bed/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6839487989705821996.bed/part-00003
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6839487989705821996.bed/.part-00000.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6839487989705821996.bed/part-00000
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6839487989705821996.bed/part-00002
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6839487989705821996.bed/_SUCCESS
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6839487989705821996.bed/part-00001
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6839487989705821996.bed/.part-00002.crc
/tmp/adamTestMvn1aEve53/TempSuite8257449296108674713
/tmp/adamTestMvn1aEve53/TempSuite1371652940479893241.sam
/tmp/adamTestMvn1aEve53/TempSuite1371652940479893241.sam/part-r-00000.sam
/tmp/adamTestMvn1aEve53/TempSuite1371652940479893241.sam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite1371652940479893241.sam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite1371652940479893241.sam/.part-r-00000.sam.crc
/tmp/adamTestMvn1aEve53/TempSuite1371652940479893241
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite8718524070325188962.gtf
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite8718524070325188962.gtf/.part-00001.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite8718524070325188962.gtf/.part-00003.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite8718524070325188962.gtf/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite8718524070325188962.gtf/part-00003
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite8718524070325188962.gtf/.part-00000.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite8718524070325188962.gtf/part-00000
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite8718524070325188962.gtf/part-00002
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite8718524070325188962.gtf/_SUCCESS
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite8718524070325188962.gtf/part-00001
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite8718524070325188962.gtf/.part-00002.crc
/tmp/adamTestMvn1aEve53/TempSuite8353299127992539597
/tmp/adamTestMvn1aEve53/reads3297442642165899454
/tmp/adamTestMvn1aEve53/reads3297442642165899454/reads2.fq
/tmp/adamTestMvn1aEve53/reads3297442642165899454/reads2.fq/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/reads3297442642165899454/reads2.fq/.part-00000.crc
/tmp/adamTestMvn1aEve53/reads3297442642165899454/reads2.fq/part-00000
/tmp/adamTestMvn1aEve53/reads3297442642165899454/reads2.fq/_SUCCESS
/tmp/adamTestMvn1aEve53/reads3297442642165899454/reads1.fq
/tmp/adamTestMvn1aEve53/reads3297442642165899454/reads1.fq/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/reads3297442642165899454/reads1.fq/.part-00000.crc
/tmp/adamTestMvn1aEve53/reads3297442642165899454/reads1.fq/part-00000
/tmp/adamTestMvn1aEve53/reads3297442642165899454/reads1.fq/_SUCCESS
/tmp/adamTestMvn1aEve53/2069706822687715452
/tmp/adamTestMvn1aEve53/2069706822687715452/.small.vcf.bgz.crc
/tmp/adamTestMvn1aEve53/2069706822687715452/small.vcf.bgz
/tmp/adamTestMvn1aEve53/85561537015993195
/tmp/adamTestMvn1aEve53/85561537015993195/genotypes.adam
/tmp/adamTestMvn1aEve53/85561537015993195/genotypes.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/85561537015993195/genotypes.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/85561537015993195/genotypes.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/85561537015993195/genotypes.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/85561537015993195/genotypes.adam/._header.crc
/tmp/adamTestMvn1aEve53/85561537015993195/genotypes.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/85561537015993195/genotypes.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/85561537015993195/genotypes.adam/_metadata
/tmp/adamTestMvn1aEve53/85561537015993195/genotypes.adam/_samples.avro
/tmp/adamTestMvn1aEve53/85561537015993195/genotypes.adam/_common_metadata
/tmp/adamTestMvn1aEve53/85561537015993195/genotypes.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/85561537015993195/genotypes.adam/_references.avro
/tmp/adamTestMvn1aEve53/85561537015993195/genotypes.adam/_header
/tmp/adamTestMvn1aEve53/85561537015993195/genotypes.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite9016103903935194444
/tmp/adamTestMvn1aEve53/.FeatureDatasetFunctionsSuite486488982734603353.gtf.crc
/tmp/adamTestMvn1aEve53/TempSuite273117908500291689.adam
/tmp/adamTestMvn1aEve53/TempSuite273117908500291689.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite273117908500291689.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite273117908500291689.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite273117908500291689.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite273117908500291689.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite273117908500291689.adam/part-00000-4569b641-d9d5-4213-936d-cff727f0c143-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite273117908500291689.adam/.part-00000-4569b641-d9d5-4213-936d-cff727f0c143-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite273117908500291689.adam/_header
/tmp/adamTestMvn1aEve53/TempSuite2541385991357697335.fa
/tmp/adamTestMvn1aEve53/TempSuite2541385991357697335.fa/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite2541385991357697335.fa/.part-00000.crc
/tmp/adamTestMvn1aEve53/TempSuite2541385991357697335.fa/part-00000
/tmp/adamTestMvn1aEve53/TempSuite2541385991357697335.fa/_SUCCESS
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite1204046769010805856.bed
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite1204046769010805856.bed/.part-00001.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite1204046769010805856.bed/.part-00003.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite1204046769010805856.bed/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite1204046769010805856.bed/part-00003
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite1204046769010805856.bed/.part-00000.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite1204046769010805856.bed/part-00000
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite1204046769010805856.bed/part-00002
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite1204046769010805856.bed/_SUCCESS
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite1204046769010805856.bed/part-00001
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite1204046769010805856.bed/.part-00002.crc
/tmp/adamTestMvn1aEve53/TempSuite8913675157487809814
/tmp/adamTestMvn1aEve53/TempSuite550681168842274096.adam
/tmp/adamTestMvn1aEve53/TempSuite550681168842274096.adam/.part-00001-1d957104-9ca9-4902-ba35-f867312a0e75-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite550681168842274096.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite550681168842274096.adam/.part-00002-1d957104-9ca9-4902-ba35-f867312a0e75-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite550681168842274096.adam/part-00002-1d957104-9ca9-4902-ba35-f867312a0e75-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite550681168842274096.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite550681168842274096.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite550681168842274096.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite550681168842274096.adam/.part-00000-1d957104-9ca9-4902-ba35-f867312a0e75-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite550681168842274096.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite550681168842274096.adam/part-00000-1d957104-9ca9-4902-ba35-f867312a0e75-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite550681168842274096.adam/_header
/tmp/adamTestMvn1aEve53/TempSuite550681168842274096.adam/part-00001-1d957104-9ca9-4902-ba35-f867312a0e75-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite8859761923626965813
/tmp/adamTestMvn1aEve53/TempSuite5798561161722449001.sam
/tmp/adamTestMvn1aEve53/bqsr16539312274167543285
/tmp/adamTestMvn1aEve53/bqsr16539312274167543285/bqsr1.bam
/tmp/adamTestMvn1aEve53/bqsr16539312274167543285/.bqsr1.bam.crc
/tmp/adamTestMvn1aEve53/TempSuite1106067750970500566
/tmp/adamTestMvn1aEve53/.TempSuite5109225282494132708.sam.crc
/tmp/adamTestMvn1aEve53/TempSuite1855280556002737380
/tmp/adamTestMvn1aEve53/TempSuite2743448430350111530.adam
/tmp/adamTestMvn1aEve53/TempSuite2743448430350111530.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite2743448430350111530.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite2743448430350111530.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite2743448430350111530.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite2743448430350111530.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite2743448430350111530.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite2743448430350111530.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite2743448430350111530.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite2743448430350111530.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite2743448430350111530.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite2743448430350111530.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite2743448430350111530.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/TempSuite2743448430350111530.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/TempSuite2743448430350111530.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite873598174641386533.bed
/tmp/adamTestMvn1aEve53/TempSuite873598174641386533.bed/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite873598174641386533.bed/.part-00000.crc
/tmp/adamTestMvn1aEve53/TempSuite873598174641386533.bed/part-00000
/tmp/adamTestMvn1aEve53/TempSuite873598174641386533.bed/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite3535995421339380512
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite8911151029430356901.gff3
/tmp/adamTestMvn1aEve53/TempSuite6196810102154103775.adam
/tmp/adamTestMvn1aEve53/TempSuite6196810102154103775.adam/part-00000-14daa93b-1a71-4025-ac5f-9a4d3fd03fe6-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite6196810102154103775.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite6196810102154103775.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite6196810102154103775.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite6196810102154103775.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite6196810102154103775.adam/.part-00000-14daa93b-1a71-4025-ac5f-9a4d3fd03fe6-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite6196810102154103775.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite6196810102154103775.adam/_header
/tmp/adamTestMvn1aEve53/TempSuite3780876533488127664.fq
/tmp/adamTestMvn1aEve53/TempSuite3780876533488127664.fq/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite3780876533488127664.fq/.part-00000.crc
/tmp/adamTestMvn1aEve53/TempSuite3780876533488127664.fq/part-00000
/tmp/adamTestMvn1aEve53/TempSuite3780876533488127664.fq/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite1516053431153724659
/tmp/adamTestMvn1aEve53/TempSuite6943804717978830377.adam
/tmp/adamTestMvn1aEve53/TempSuite6943804717978830377.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite6943804717978830377.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite6943804717978830377.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite6943804717978830377.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite6943804717978830377.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite6943804717978830377.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite6943804717978830377.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite6943804717978830377.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite6943804717978830377.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite6943804717978830377.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite6943804717978830377.adam/_header
/tmp/adamTestMvn1aEve53/TempSuite6943804717978830377.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite1857648626317962572.adam
/tmp/adamTestMvn1aEve53/TempSuite1857648626317962572.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite1857648626317962572.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite1857648626317962572.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite1857648626317962572.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite1857648626317962572.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite1857648626317962572.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite1857648626317962572.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite1857648626317962572.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite1857648626317962572.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite1857648626317962572.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite1857648626317962572.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite1857648626317962572.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/TempSuite1857648626317962572.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/TempSuite1857648626317962572.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite6412206575816827497.adam
/tmp/adamTestMvn1aEve53/TempSuite6412206575816827497.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite6412206575816827497.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite6412206575816827497.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite6412206575816827497.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite6412206575816827497.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite6412206575816827497.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite6412206575816827497.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite6412206575816827497.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite6412206575816827497.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite6412206575816827497.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite6412206575816827497.adam/_header
/tmp/adamTestMvn1aEve53/TempSuite6412206575816827497.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite4113408698035014431
/tmp/adamTestMvn1aEve53/TempSuite322173460152809427
/tmp/adamTestMvn1aEve53/TempSuite2736689753819180507.adam
/tmp/adamTestMvn1aEve53/TempSuite2736689753819180507.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite2736689753819180507.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite2736689753819180507.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite2736689753819180507.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite2736689753819180507.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite2736689753819180507.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite2736689753819180507.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite2736689753819180507.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite2736689753819180507.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite2736689753819180507.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite2736689753819180507.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite2736689753819180507.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/TempSuite2736689753819180507.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/TempSuite2736689753819180507.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite7645480139773216005.adam
/tmp/adamTestMvn1aEve53/TempSuite7645480139773216005.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite7645480139773216005.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite7645480139773216005.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite7645480139773216005.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite7645480139773216005.adam/.part-00000-193b1989-3d04-47e1-9175-45fcab3ec862-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite7645480139773216005.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite7645480139773216005.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite7645480139773216005.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/TempSuite7645480139773216005.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/TempSuite7645480139773216005.adam/part-00000-193b1989-3d04-47e1-9175-45fcab3ec862-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite5180918299770733893.gff3
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite5180918299770733893.gff3/.part-00001.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite5180918299770733893.gff3/.part-00003.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite5180918299770733893.gff3/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite5180918299770733893.gff3/part-00003
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite5180918299770733893.gff3/.part-00000.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite5180918299770733893.gff3/part-00000
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite5180918299770733893.gff3/part-00002
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite5180918299770733893.gff3/_SUCCESS
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite5180918299770733893.gff3/part-00001
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite5180918299770733893.gff3/.part-00002.crc
/tmp/adamTestMvn1aEve53/TempSuite8851823247758389016.adam
/tmp/adamTestMvn1aEve53/TempSuite8851823247758389016.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite8851823247758389016.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite8851823247758389016.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite8851823247758389016.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite8851823247758389016.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite8851823247758389016.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite8851823247758389016.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite8851823247758389016.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite8851823247758389016.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite8851823247758389016.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite8851823247758389016.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite8851823247758389016.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/TempSuite8851823247758389016.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/TempSuite8851823247758389016.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/5074529607555876087
/tmp/adamTestMvn1aEve53/5074529607555876087/genotypes.nested-annotations.adam
/tmp/adamTestMvn1aEve53/5074529607555876087/genotypes.nested-annotations.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/5074529607555876087/genotypes.nested-annotations.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/5074529607555876087/genotypes.nested-annotations.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/5074529607555876087/genotypes.nested-annotations.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/5074529607555876087/genotypes.nested-annotations.adam/._header.crc
/tmp/adamTestMvn1aEve53/5074529607555876087/genotypes.nested-annotations.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/5074529607555876087/genotypes.nested-annotations.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/5074529607555876087/genotypes.nested-annotations.adam/_metadata
/tmp/adamTestMvn1aEve53/5074529607555876087/genotypes.nested-annotations.adam/_samples.avro
/tmp/adamTestMvn1aEve53/5074529607555876087/genotypes.nested-annotations.adam/_common_metadata
/tmp/adamTestMvn1aEve53/5074529607555876087/genotypes.nested-annotations.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/5074529607555876087/genotypes.nested-annotations.adam/_references.avro
/tmp/adamTestMvn1aEve53/5074529607555876087/genotypes.nested-annotations.adam/_header
/tmp/adamTestMvn1aEve53/5074529607555876087/genotypes.nested-annotations.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite7597416609166390310.interval_list
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite7597416609166390310.interval_list/.part-00001.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite7597416609166390310.interval_list/.part-00003.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite7597416609166390310.interval_list/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite7597416609166390310.interval_list/part-00003
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite7597416609166390310.interval_list/.part-00000.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite7597416609166390310.interval_list/part-00000
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite7597416609166390310.interval_list/part-00002
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite7597416609166390310.interval_list/_SUCCESS
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite7597416609166390310.interval_list/part-00001
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite7597416609166390310.interval_list/.part-00002.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite3852120267839995307.gff3
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite3852120267839995307.gff3/.part-00001.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite3852120267839995307.gff3/.part-00003.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite3852120267839995307.gff3/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite3852120267839995307.gff3/part-00003
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite3852120267839995307.gff3/.part-00000.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite3852120267839995307.gff3/part-00000
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite3852120267839995307.gff3/part-00002
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite3852120267839995307.gff3/_SUCCESS
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite3852120267839995307.gff3/part-00001
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite3852120267839995307.gff3/.part-00002.crc
/tmp/adamTestMvn1aEve53/TempSuite3481569353112394036
/tmp/adamTestMvn1aEve53/TempSuite7880933933756195056
/tmp/adamTestMvn1aEve53/TempSuite4038243719690036342
/tmp/adamTestMvn1aEve53/TempSuite4537829669394939889
/tmp/adamTestMvn1aEve53/TempSuite7025162008074833230.fq
/tmp/adamTestMvn1aEve53/TempSuite7025162008074833230.fq/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite7025162008074833230.fq/.part-00000.crc
/tmp/adamTestMvn1aEve53/TempSuite7025162008074833230.fq/part-00000
/tmp/adamTestMvn1aEve53/TempSuite7025162008074833230.fq/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite3489393597166324413
/tmp/adamTestMvn1aEve53/TempSuite8216613769503053873.adam
/tmp/adamTestMvn1aEve53/TempSuite8216613769503053873.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite8216613769503053873.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite8216613769503053873.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite8216613769503053873.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite8216613769503053873.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite8216613769503053873.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite8216613769503053873.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite8216613769503053873.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite8216613769503053873.adam/_samples.avro
/tmp/adamTestMvn1aEve53/TempSuite8216613769503053873.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite8216613769503053873.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite8216613769503053873.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite8216613769503053873.adam/_header
/tmp/adamTestMvn1aEve53/TempSuite8216613769503053873.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/small.vcf3619255556548487320.vcf
/tmp/adamTestMvn1aEve53/3597602081902789910
/tmp/adamTestMvn1aEve53/3597602081902789910/genotypes.lex.adam
/tmp/adamTestMvn1aEve53/3597602081902789910/genotypes.lex.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/3597602081902789910/genotypes.lex.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/3597602081902789910/genotypes.lex.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/3597602081902789910/genotypes.lex.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/3597602081902789910/genotypes.lex.adam/._header.crc
/tmp/adamTestMvn1aEve53/3597602081902789910/genotypes.lex.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/3597602081902789910/genotypes.lex.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/3597602081902789910/genotypes.lex.adam/_metadata
/tmp/adamTestMvn1aEve53/3597602081902789910/genotypes.lex.adam/_samples.avro
/tmp/adamTestMvn1aEve53/3597602081902789910/genotypes.lex.adam/_common_metadata
/tmp/adamTestMvn1aEve53/3597602081902789910/genotypes.lex.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/3597602081902789910/genotypes.lex.adam/_references.avro
/tmp/adamTestMvn1aEve53/3597602081902789910/genotypes.lex.adam/_header
/tmp/adamTestMvn1aEve53/3597602081902789910/genotypes.lex.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite5078266978505668954.adam
/tmp/adamTestMvn1aEve53/TempSuite5078266978505668954.adam/referenceName=13
/tmp/adamTestMvn1aEve53/TempSuite5078266978505668954.adam/referenceName=13/positionBin=0
/tmp/adamTestMvn1aEve53/TempSuite5078266978505668954.adam/referenceName=13/positionBin=0/part-00000-4aa18b70-8603-41ba-8ab7-94cd2fa17931.c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite5078266978505668954.adam/referenceName=13/positionBin=0/.part-00000-4aa18b70-8603-41ba-8ab7-94cd2fa17931.c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite5078266978505668954.adam/referenceName=2
/tmp/adamTestMvn1aEve53/TempSuite5078266978505668954.adam/referenceName=2/positionBin=0
/tmp/adamTestMvn1aEve53/TempSuite5078266978505668954.adam/referenceName=2/positionBin=0/part-00000-4aa18b70-8603-41ba-8ab7-94cd2fa17931.c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite5078266978505668954.adam/referenceName=2/positionBin=0/.part-00000-4aa18b70-8603-41ba-8ab7-94cd2fa17931.c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite5078266978505668954.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite5078266978505668954.adam/._partitionedByStartPos.crc
/tmp/adamTestMvn1aEve53/TempSuite5078266978505668954.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite5078266978505668954.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite5078266978505668954.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite5078266978505668954.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite5078266978505668954.adam/referenceName=1
/tmp/adamTestMvn1aEve53/TempSuite5078266978505668954.adam/referenceName=1/positionBin=0
/tmp/adamTestMvn1aEve53/TempSuite5078266978505668954.adam/referenceName=1/positionBin=0/part-00000-4aa18b70-8603-41ba-8ab7-94cd2fa17931.c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite5078266978505668954.adam/referenceName=1/positionBin=0/.part-00000-4aa18b70-8603-41ba-8ab7-94cd2fa17931.c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite5078266978505668954.adam/_header
/tmp/adamTestMvn1aEve53/TempSuite5078266978505668954.adam/_partitionedByStartPos
/tmp/adamTestMvn1aEve53/TempSuite8799129909505605311
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite1664519968713803295
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite6427644252311693168
/tmp/adamTestMvn1aEve53/.TempSuite1784855944946229571.sam.crc
/tmp/adamTestMvn1aEve53/TempSuite6075836379620828061
/tmp/adamTestMvn1aEve53/ReadDatasetSuite8465019912619617945
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite428695120596514322.gff3
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite428695120596514322.gff3/.part-00001.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite428695120596514322.gff3/.part-00003.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite428695120596514322.gff3/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite428695120596514322.gff3/part-00003
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite428695120596514322.gff3/.part-00000.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite428695120596514322.gff3/part-00000
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite428695120596514322.gff3/part-00002
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite428695120596514322.gff3/_SUCCESS
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite428695120596514322.gff3/part-00001
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite428695120596514322.gff3/.part-00002.crc
/tmp/adamTestMvn1aEve53/TempSuite127294979635759299
/tmp/adamTestMvn1aEve53/TempSuite5545008769360228853
/tmp/adamTestMvn1aEve53/TempSuite8932115996607824865.bam
/tmp/adamTestMvn1aEve53/TempSuite8970974159020909231.adam
/tmp/adamTestMvn1aEve53/TempSuite8970974159020909231.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite8970974159020909231.adam/.part-00000-82ab47cd-2c11-4dc5-8c49-116bf35c77b1-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite8970974159020909231.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite8970974159020909231.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite8970974159020909231.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite8970974159020909231.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite8970974159020909231.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite8970974159020909231.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/TempSuite8970974159020909231.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/TempSuite8970974159020909231.adam/part-00000-82ab47cd-2c11-4dc5-8c49-116bf35c77b1-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/javaAC2475765292493203781
/tmp/adamTestMvn1aEve53/javaAC2475765292493203781/testRdd.fragment.adam
/tmp/adamTestMvn1aEve53/javaAC2475765292493203781/testRdd.fragment.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/javaAC2475765292493203781/testRdd.fragment.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/javaAC2475765292493203781/testRdd.fragment.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/javaAC2475765292493203781/testRdd.fragment.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/javaAC2475765292493203781/testRdd.fragment.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/javaAC2475765292493203781/testRdd.fragment.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/javaAC2475765292493203781/testRdd.fragment.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/javaAC2475765292493203781/testRdd.fragment.adam/_metadata
/tmp/adamTestMvn1aEve53/javaAC2475765292493203781/testRdd.fragment.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/javaAC2475765292493203781/testRdd.fragment.adam/_common_metadata
/tmp/adamTestMvn1aEve53/javaAC2475765292493203781/testRdd.fragment.adam/_references.avro
/tmp/adamTestMvn1aEve53/javaAC2475765292493203781/testRdd.fragment.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/javaAC2475765292493203781/testRdd.fragment.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/javaAC2475765292493203781/testRdd.fragment.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite8377580263766222591
/tmp/adamTestMvn1aEve53/TempSuite6082241620864512857
/tmp/adamTestMvn1aEve53/reads122176017635189330643
/tmp/adamTestMvn1aEve53/reads122176017635189330643/reads12.fq
/tmp/adamTestMvn1aEve53/reads122176017635189330643/reads12.fq/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/reads122176017635189330643/reads12.fq/.part-00000.crc
/tmp/adamTestMvn1aEve53/reads122176017635189330643/reads12.fq/part-00000
/tmp/adamTestMvn1aEve53/reads122176017635189330643/reads12.fq/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite6082241620864512857.adam
/tmp/adamTestMvn1aEve53/TempSuite6082241620864512857.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite6082241620864512857.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite6082241620864512857.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite6082241620864512857.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite6082241620864512857.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite6082241620864512857.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite6082241620864512857.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite6082241620864512857.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite6082241620864512857.adam/_samples.avro
/tmp/adamTestMvn1aEve53/TempSuite6082241620864512857.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite6082241620864512857.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite6082241620864512857.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite6082241620864512857.adam/_header
/tmp/adamTestMvn1aEve53/TempSuite6082241620864512857.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite8634222212785904273.adam
/tmp/adamTestMvn1aEve53/TempSuite8634222212785904273.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite8634222212785904273.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite8634222212785904273.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite8634222212785904273.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite8634222212785904273.adam/.part-00000-6a719a08-e7ce-4ffd-aa1b-d6844e59a065-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite8634222212785904273.adam/part-00000-6a719a08-e7ce-4ffd-aa1b-d6844e59a065-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite8634222212785904273.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite8634222212785904273.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite8634222212785904273.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/TempSuite8634222212785904273.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/unordered.sam2078441017061056080.sam
/tmp/adamTestMvn1aEve53/TempSuite1505106303766782669
/tmp/adamTestMvn1aEve53/TempSuite9208155162472623284
/tmp/adamTestMvn1aEve53/random.vcf3298278732756248597.vcf
/tmp/adamTestMvn1aEve53/reads121613958566217113908
/tmp/adamTestMvn1aEve53/reads121613958566217113908/reads12.sam
/tmp/adamTestMvn1aEve53/reads121613958566217113908/reads12.sam/part-r-00000.sam
/tmp/adamTestMvn1aEve53/reads121613958566217113908/reads12.sam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/reads121613958566217113908/reads12.sam/_SUCCESS
/tmp/adamTestMvn1aEve53/reads121613958566217113908/reads12.sam/.part-r-00000.sam.crc
/tmp/adamTestMvn1aEve53/TempSuite320622463987252133
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite8203956352949010156.bed
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite8203956352949010156.bed/.part-00001.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite8203956352949010156.bed/.part-00003.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite8203956352949010156.bed/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite8203956352949010156.bed/part-00003
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite8203956352949010156.bed/.part-00000.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite8203956352949010156.bed/part-00000
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite8203956352949010156.bed/part-00002
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite8203956352949010156.bed/_SUCCESS
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite8203956352949010156.bed/part-00001
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite8203956352949010156.bed/.part-00002.crc
/tmp/adamTestMvn1aEve53/TempSuite3290763033067440745
/tmp/adamTestMvn1aEve53/TempSuite4077879937940184546
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite5070002804702718014.gff3
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite5070002804702718014.gff3/.part-00001.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite5070002804702718014.gff3/.part-00003.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite5070002804702718014.gff3/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite5070002804702718014.gff3/part-00003
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite5070002804702718014.gff3/.part-00000.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite5070002804702718014.gff3/part-00000
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite5070002804702718014.gff3/part-00002
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite5070002804702718014.gff3/_SUCCESS
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite5070002804702718014.gff3/part-00001
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite5070002804702718014.gff3/.part-00002.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite5055438290976542707
/tmp/adamTestMvn1aEve53/trinity.fa6872880915165919183.fa
/tmp/adamTestMvn1aEve53/TempSuite2853975792301754030.adam
/tmp/adamTestMvn1aEve53/TempSuite2853975792301754030.adam/part-00000-d7b83a38-bbcc-429f-b4a5-2a04e042c90f-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite2853975792301754030.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite2853975792301754030.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite2853975792301754030.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite2853975792301754030.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite2853975792301754030.adam/_samples.avro
/tmp/adamTestMvn1aEve53/TempSuite2853975792301754030.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite2853975792301754030.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite2853975792301754030.adam/_header
/tmp/adamTestMvn1aEve53/TempSuite2853975792301754030.adam/.part-00000-d7b83a38-bbcc-429f-b4a5-2a04e042c90f-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite6847458077544774899
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2115577474726668409.narrowPeak
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2115577474726668409.narrowPeak/.part-00001.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2115577474726668409.narrowPeak/.part-00003.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2115577474726668409.narrowPeak/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2115577474726668409.narrowPeak/part-00003
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2115577474726668409.narrowPeak/.part-00000.crc
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2115577474726668409.narrowPeak/part-00000
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2115577474726668409.narrowPeak/part-00002
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2115577474726668409.narrowPeak/_SUCCESS
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2115577474726668409.narrowPeak/part-00001
/tmp/adamTestMvn1aEve53/FeatureDatasetFunctionsSuite2115577474726668409.narrowPeak/.part-00002.crc
/tmp/adamTestMvn1aEve53/TempSuite8244349020070674022.bed
/tmp/adamTestMvn1aEve53/TempSuite8244349020070674022.bed/.part-00001.crc
/tmp/adamTestMvn1aEve53/TempSuite8244349020070674022.bed/.part-00003.crc
/tmp/adamTestMvn1aEve53/TempSuite8244349020070674022.bed/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite8244349020070674022.bed/part-00003
/tmp/adamTestMvn1aEve53/TempSuite8244349020070674022.bed/.part-00000.crc
/tmp/adamTestMvn1aEve53/TempSuite8244349020070674022.bed/part-00000
/tmp/adamTestMvn1aEve53/TempSuite8244349020070674022.bed/part-00002
/tmp/adamTestMvn1aEve53/TempSuite8244349020070674022.bed/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite8244349020070674022.bed/part-00001
/tmp/adamTestMvn1aEve53/TempSuite8244349020070674022.bed/.part-00002.crc
/tmp/adamTestMvn1aEve53/6571623298410416921
/tmp/adamTestMvn1aEve53/6571623298410416921/unordered.adam
/tmp/adamTestMvn1aEve53/6571623298410416921/unordered.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/6571623298410416921/unordered.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/6571623298410416921/unordered.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/6571623298410416921/unordered.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/6571623298410416921/unordered.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/6571623298410416921/unordered.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/6571623298410416921/unordered.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/6571623298410416921/unordered.adam/_metadata
/tmp/adamTestMvn1aEve53/6571623298410416921/unordered.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/6571623298410416921/unordered.adam/_common_metadata
/tmp/adamTestMvn1aEve53/6571623298410416921/unordered.adam/_references.avro
/tmp/adamTestMvn1aEve53/6571623298410416921/unordered.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/6571623298410416921/unordered.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/6571623298410416921/unordered.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/random.vcf2387578499084838151.vcf
/tmp/adamTestMvn1aEve53/TempSuite2456098511292702094
/tmp/adamTestMvn1aEve53/TempSuite7305833976739340628.bed
/tmp/adamTestMvn1aEve53/TempSuite7305833976739340628.bed/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite7305833976739340628.bed/.part-00000.crc
/tmp/adamTestMvn1aEve53/TempSuite7305833976739340628.bed/part-00000
/tmp/adamTestMvn1aEve53/TempSuite7305833976739340628.bed/_SUCCESS
/tmp/adamTestMvn1aEve53/.SliceDatasetSuite1765340611681090170.fasta.crc
/tmp/adamTestMvn1aEve53/TempSuite8530679922727153652
/tmp/adamTestMvn1aEve53/TempSuite4574969928926729962
/tmp/adamTestMvn1aEve53/TempSuite520927760172617020
/tmp/adamTestMvn1aEve53/TempSuite7952219019844606804.adam
/tmp/adamTestMvn1aEve53/TempSuite7952219019844606804.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite7952219019844606804.adam/._header.crc
/tmp/adamTestMvn1aEve53/TempSuite7952219019844606804.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite7952219019844606804.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite7952219019844606804.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite7952219019844606804.adam/.part-00000-5699ef0f-9a9e-4249-af0a-6aa6cb854f1b-c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite7952219019844606804.adam/_header
/tmp/adamTestMvn1aEve53/TempSuite7952219019844606804.adam/part-00000-5699ef0f-9a9e-4249-af0a-6aa6cb854f1b-c000.snappy.parquet
/tmp/adamTestMvn1aEve53/small.sam5342184483369388272.sam
/tmp/adamTestMvn1aEve53/TempSuite4872160328177957379.sam
/tmp/adamTestMvn1aEve53/TempSuite4872160328177957379.sam/part-r-00000.sam
/tmp/adamTestMvn1aEve53/TempSuite4872160328177957379.sam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite4872160328177957379.sam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite4872160328177957379.sam/.part-r-00000.sam.crc
/tmp/adamTestMvn1aEve53/4256536882267061223
/tmp/adamTestMvn1aEve53/4256536882267061223/coverage.adam
/tmp/adamTestMvn1aEve53/4256536882267061223/coverage.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/4256536882267061223/coverage.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/4256536882267061223/coverage.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/4256536882267061223/coverage.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/4256536882267061223/coverage.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/4256536882267061223/coverage.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/4256536882267061223/coverage.adam/_metadata
/tmp/adamTestMvn1aEve53/4256536882267061223/coverage.adam/_samples.avro
/tmp/adamTestMvn1aEve53/4256536882267061223/coverage.adam/_common_metadata
/tmp/adamTestMvn1aEve53/4256536882267061223/coverage.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/4256536882267061223/coverage.adam/_references.avro
/tmp/adamTestMvn1aEve53/4256536882267061223/coverage.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite304364378623276603
/tmp/adamTestMvn1aEve53/TempSuite5651984448772335804.bed
/tmp/adamTestMvn1aEve53/TempSuite5651984448772335804.bed/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite5651984448772335804.bed/.part-00000.crc
/tmp/adamTestMvn1aEve53/TempSuite5651984448772335804.bed/part-00000
/tmp/adamTestMvn1aEve53/TempSuite5651984448772335804.bed/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite8329923660103659278.bed
/tmp/adamTestMvn1aEve53/TempSuite8329923660103659278.bed/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite8329923660103659278.bed/.part-00000.crc
/tmp/adamTestMvn1aEve53/TempSuite8329923660103659278.bed/part-00000
/tmp/adamTestMvn1aEve53/TempSuite8329923660103659278.bed/_SUCCESS
/tmp/adamTestMvn1aEve53/5186641349485347523
/tmp/adamTestMvn1aEve53/5186641349485347523/variants.adam
/tmp/adamTestMvn1aEve53/5186641349485347523/variants.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/5186641349485347523/variants.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/5186641349485347523/variants.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/5186641349485347523/variants.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/5186641349485347523/variants.adam/._header.crc
/tmp/adamTestMvn1aEve53/5186641349485347523/variants.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/5186641349485347523/variants.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/5186641349485347523/variants.adam/_metadata
/tmp/adamTestMvn1aEve53/5186641349485347523/variants.adam/_common_metadata
/tmp/adamTestMvn1aEve53/5186641349485347523/variants.adam/_references.avro
/tmp/adamTestMvn1aEve53/5186641349485347523/variants.adam/_header
/tmp/adamTestMvn1aEve53/5186641349485347523/variants.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite8140531562032130487
/tmp/adamTestMvn1aEve53/TempSuite9120054522285798511.adam
/tmp/adamTestMvn1aEve53/TempSuite9120054522285798511.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite9120054522285798511.adam/._partitionedByStartPos.crc
/tmp/adamTestMvn1aEve53/TempSuite9120054522285798511.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite9120054522285798511.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite9120054522285798511.adam/_samples.avro
/tmp/adamTestMvn1aEve53/TempSuite9120054522285798511.adam/._samples.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite9120054522285798511.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite9120054522285798511.adam/referenceName=1
/tmp/adamTestMvn1aEve53/TempSuite9120054522285798511.adam/referenceName=1/positionBin=14
/tmp/adamTestMvn1aEve53/TempSuite9120054522285798511.adam/referenceName=1/positionBin=14/part-00000-42f585fb-d6b5-4053-85c9-c3e8cf94faac.c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite9120054522285798511.adam/referenceName=1/positionBin=14/.part-00000-42f585fb-d6b5-4053-85c9-c3e8cf94faac.c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite9120054522285798511.adam/referenceName=1/positionBin=169
/tmp/adamTestMvn1aEve53/TempSuite9120054522285798511.adam/referenceName=1/positionBin=169/part-00001-42f585fb-d6b5-4053-85c9-c3e8cf94faac.c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite9120054522285798511.adam/referenceName=1/positionBin=169/.part-00001-42f585fb-d6b5-4053-85c9-c3e8cf94faac.c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite9120054522285798511.adam/referenceName=1/positionBin=240
/tmp/adamTestMvn1aEve53/TempSuite9120054522285798511.adam/referenceName=1/positionBin=240/.part-00002-42f585fb-d6b5-4053-85c9-c3e8cf94faac.c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite9120054522285798511.adam/referenceName=1/positionBin=240/part-00002-42f585fb-d6b5-4053-85c9-c3e8cf94faac.c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite9120054522285798511.adam/referenceName=1/positionBin=0
/tmp/adamTestMvn1aEve53/TempSuite9120054522285798511.adam/referenceName=1/positionBin=0/part-00000-42f585fb-d6b5-4053-85c9-c3e8cf94faac.c000.snappy.parquet
/tmp/adamTestMvn1aEve53/TempSuite9120054522285798511.adam/referenceName=1/positionBin=0/.part-00000-42f585fb-d6b5-4053-85c9-c3e8cf94faac.c000.snappy.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite9120054522285798511.adam/_partitionedByStartPos
/tmp/adamTestMvn1aEve53/TempSuite1808220779183221623.adam
/tmp/adamTestMvn1aEve53/TempSuite1808220779183221623.adam/part-r-00000.gz.parquet
/tmp/adamTestMvn1aEve53/TempSuite1808220779183221623.adam/._SUCCESS.crc
/tmp/adamTestMvn1aEve53/TempSuite1808220779183221623.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvn1aEve53/TempSuite1808220779183221623.adam/._metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite1808220779183221623.adam/._processingSteps.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite1808220779183221623.adam/._references.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite1808220779183221623.adam/_SUCCESS
/tmp/adamTestMvn1aEve53/TempSuite1808220779183221623.adam/_metadata
/tmp/adamTestMvn1aEve53/TempSuite1808220779183221623.adam/._readGroups.avro.crc
/tmp/adamTestMvn1aEve53/TempSuite1808220779183221623.adam/_common_metadata
/tmp/adamTestMvn1aEve53/TempSuite1808220779183221623.adam/_references.avro
/tmp/adamTestMvn1aEve53/TempSuite1808220779183221623.adam/_processingSteps.avro
/tmp/adamTestMvn1aEve53/TempSuite1808220779183221623.adam/_readGroups.avro
/tmp/adamTestMvn1aEve53/TempSuite1808220779183221623.adam/._common_metadata.crc
/tmp/adamTestMvn1aEve53/TempSuite1573667637541905727
/tmp/adamTestMvn1aEve53/5248428487190969224
/tmp/adamTestMvn1aEve53/5248428487190969224/sorted.sam
/tmp/adamTestMvn1aEve53/5248428487190969224/.sorted.sam.crc
rm -rf ${ADAM_MVN_TMP_DIR}
+ rm -rf /tmp/adamTestMvn1aEve53

find . -name pom.xml \
    -exec sed -i.bak \
    -e "s:sun.io.serialization.extendedDebugInfo=true -Djava.io.tmpdir=${ADAM_MVN_TMP_DIR}:sun.io.serialization.extendedDebugInfo=true:g" \
    {} \;
+ find . -name pom.xml -exec sed -i.bak -e 's:sun.io.serialization.extendedDebugInfo=true -Djava.io.tmpdir=/tmp/adamTestMvn1aEve53:sun.io.serialization.extendedDebugInfo=true:g' '{}' ';'
find . -name "*.bak" -exec rm -f {} \;
+ find . -name '*.bak' -exec rm -f '{}' ';'

# run integration tests

# make a temp directory
ADAM_TMP_DIR=$(mktemp -d -t adamTestXXXXXXX)
mktemp -d -t adamTestXXXXXXX
++ mktemp -d -t adamTestXXXXXXX
+ ADAM_TMP_DIR=/tmp/adamTestgKK9BQk

# Just to be paranoid.. use a directory internal to the ADAM_TMP_DIR
ADAM_TMP_DIR=$ADAM_TMP_DIR/deleteMePleaseThisIsNoLongerNeeded
+ ADAM_TMP_DIR=/tmp/adamTestgKK9BQk/deleteMePleaseThisIsNoLongerNeeded
mkdir $ADAM_TMP_DIR
+ mkdir /tmp/adamTestgKK9BQk/deleteMePleaseThisIsNoLongerNeeded

# set the TMPDIR envar, which is used by python to choose where to make temp directories
export TMPDIR=${ADAM_TMP_DIR}
+ export TMPDIR=/tmp/adamTestgKK9BQk/deleteMePleaseThisIsNoLongerNeeded
+ TMPDIR=/tmp/adamTestgKK9BQk/deleteMePleaseThisIsNoLongerNeeded

pushd $PROJECT_ROOT
+ pushd /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/scripts/..
~/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu ~/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu

# Copy the jar into our temp space for testing
cp -r . $ADAM_TMP_DIR
+ cp -r . /tmp/adamTestgKK9BQk/deleteMePleaseThisIsNoLongerNeeded
popd
+ popd
~/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu

pushd $ADAM_TMP_DIR
+ pushd /tmp/adamTestgKK9BQk/deleteMePleaseThisIsNoLongerNeeded
/tmp/adamTestgKK9BQk/deleteMePleaseThisIsNoLongerNeeded ~/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu

# what hadoop version are we on? format string for downloading spark assembly
if [[ $HADOOP_VERSION =~ ^2\.7 ]]; then
    HADOOP=hadoop2.7
else
    echo "Unknown Hadoop version."
    exit 1
fi
+ [[ 2.7.5 =~ ^2\.7 ]]
+ HADOOP=hadoop2.7

# set spark artifact string for downloading assembly
SPARK=spark-${SPARK_VERSION}
+ SPARK=spark-3.0.0
    
# download prepackaged spark assembly

# Spark 2.4.3+ and less than 3.0.0 needs special case for Scala 2.12
if [ ${SCALA_VERSION} == 2.12 ] && [ ${SPARK_VERSION} == 2.4.6 ]
then
    curl \
        -L "https://www.apache.org/dyn/mirrors/mirrors.cgi?action=download&filename=spark/${SPARK}/${SPARK}-bin-without-hadoop-scala-2.12.tgz" \
        -o ${SPARK}-bin-without-hadoop-scala-2.12.tgz

    tar xzvf ${SPARK}-bin-without-hadoop-scala-2.12.tgz
    export SPARK_HOME=${ADAM_TMP_DIR}/${SPARK}-bin-without-hadoop-scala-2.12

    curl \
        -L "https://www.apache.org/dyn/mirrors/mirrors.cgi?action=download&filename=hadoop/core/hadoop-2.7.7/hadoop-2.7.7.tar.gz" \
        -o hadoop-2.7.7.tar.gz

    tar xzvf hadoop-2.7.7.tar.gz

    # remove references to avro 1.7.x
    find hadoop-2.7.7 -name *.jar | grep avro | xargs rm

    # download avro 1.8.x
    #curl \
    #    -L "https://repo1.maven.org/maven2/org/apache/avro/avro/1.8.2/avro-1.8.2.jar" \
    #    -o hadoop-2.7.7/share/hadoop/common/avro-1.8.2.jar

    export SPARK_DIST_CLASSPATH=$(hadoop-2.7.7/bin/hadoop classpath)
else
    curl \
        -v \
        -L "https://www.apache.org/dyn/mirrors/mirrors.cgi?action=download&filename=spark/${SPARK}/${SPARK}-bin-${HADOOP}.tgz" \
        -o ${SPARK}-bin-${HADOOP}.tgz

    tar xzvf ${SPARK}-bin-${HADOOP}.tgz
    export SPARK_HOME=${ADAM_TMP_DIR}/${SPARK}-bin-${HADOOP}
fi
+ '[' 2.12 == 2.12 ']'
+ '[' 3.0.0 == 2.4.6 ']'
+ curl -v -L 'https://www.apache.org/dyn/mirrors/mirrors.cgi?action=download&filename=spark/spark-3.0.0/spark-3.0.0-bin-hadoop2.7.tgz' -o spark-3.0.0-bin-hadoop2.7.tgz
*   Trying 95.216.24.32...
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0* Connected to www.apache.org (95.216.24.32) port 443 (#0)
* ALPN, offering http/1.1
* Cipher selection: ALL:!EXPORT:!EXPORT40:!EXPORT56:!aNULL:!LOW:!RC4:@STRENGTH
* successfully set certificate verify locations:
*   CAfile: /home/jenkins/anaconda2/ssl/cacert.pem
  CApath: none
* TLSv1.2 (OUT), TLS header, Certificate Status (22):
} [5 bytes data]
* TLSv1.2 (OUT), TLS handshake, Client hello (1):
} [512 bytes data]
* TLSv1.2 (IN), TLS handshake, Server hello (2):
{ [113 bytes data]
* TLSv1.2 (IN), TLS handshake, Certificate (11):
{ [4639 bytes data]
* TLSv1.2 (IN), TLS handshake, Server key exchange (12):
{ [333 bytes data]
* TLSv1.2 (IN), TLS handshake, Server finished (14):
{ [4 bytes data]
* TLSv1.2 (OUT), TLS handshake, Client key exchange (16):
} [70 bytes data]
* TLSv1.2 (OUT), TLS change cipher, Client hello (1):
} [1 bytes data]
* TLSv1.2 (OUT), TLS handshake, Finished (20):
} [16 bytes data]
* TLSv1.2 (IN), TLS change cipher, Client hello (1):
{ [1 bytes data]
* TLSv1.2 (IN), TLS handshake, Finished (20):
{ [16 bytes data]
* SSL connection using TLSv1.2 / ECDHE-RSA-AES256-GCM-SHA384
* ALPN, server accepted to use http/1.1
* Server certificate:
*  subject: OU=Domain Control Validated; OU=PositiveSSL Wildcard; CN=*.apache.org
*  start date: Jul  1 00:00:00 2019 GMT
*  expire date: Jun 30 23:59:59 2021 GMT
*  subjectAltName: host "www.apache.org" matched cert's "*.apache.org"
*  issuer: C=GB; ST=Greater Manchester; L=Salford; O=Sectigo Limited; CN=Sectigo RSA Domain Validation Secure Server CA
*  SSL certificate verify ok.

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0} [5 bytes data]
> GET /dyn/mirrors/mirrors.cgi?action=download&filename=spark/spark-3.0.0/spark-3.0.0-bin-hadoop2.7.tgz HTTP/1.1
> Host: www.apache.org
> User-Agent: curl/7.49.0
> Accept: */*
> 
{ [5 bytes data]
< HTTP/1.1 302 Found
< Date: Fri, 07 Aug 2020 00:31:39 GMT
< Server: Apache/2.4.18 (Ubuntu)
< Location: https://mirror.olnevhost.net/pub/apache/spark/spark-3.0.0/spark-3.0.0-bin-hadoop2.7.tgz
< Cache-Control: max-age=3600
< Expires: Fri, 07 Aug 2020 01:31:39 GMT
< Content-Length: 0
< 

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
* Connection #0 to host www.apache.org left intact
* Issue another request to this URL: 'https://mirror.olnevhost.net/pub/apache/spark/spark-3.0.0/spark-3.0.0-bin-hadoop2.7.tgz'
*   Trying 188.165.227.148...
* Connected to mirror.olnevhost.net (188.165.227.148) port 443 (#1)
* ALPN, offering http/1.1
* Cipher selection: ALL:!EXPORT:!EXPORT40:!EXPORT56:!aNULL:!LOW:!RC4:@STRENGTH
* successfully set certificate verify locations:
*   CAfile: /home/jenkins/anaconda2/ssl/cacert.pem
  CApath: none
* TLSv1.2 (OUT), TLS header, Certificate Status (22):
} [5 bytes data]
* TLSv1.2 (OUT), TLS handshake, Client hello (1):
} [512 bytes data]
* TLSv1.2 (IN), TLS handshake, Server hello (2):
{ [108 bytes data]
* TLSv1.2 (IN), TLS handshake, Certificate (11):
{ [4671 bytes data]
* TLSv1.2 (IN), TLS handshake, Server key exchange (12):
{ [333 bytes data]
* TLSv1.2 (IN), TLS handshake, Server finished (14):
{ [4 bytes data]
* TLSv1.2 (OUT), TLS handshake, Client key exchange (16):
} [70 bytes data]
* TLSv1.2 (OUT), TLS change cipher, Client hello (1):
} [1 bytes data]
* TLSv1.2 (OUT), TLS handshake, Finished (20):
} [16 bytes data]
* TLSv1.2 (IN), TLS change cipher, Client hello (1):
{ [1 bytes data]
* TLSv1.2 (IN), TLS handshake, Finished (20):
{ [16 bytes data]
* SSL connection using TLSv1.2 / ECDHE-RSA-AES256-GCM-SHA384
* ALPN, server accepted to use http/1.1
* Server certificate:
*  subject: CN=mirror.olnevhost.net
*  start date: May 31 00:00:00 2020 GMT
*  expire date: Aug 29 23:59:59 2020 GMT
*  subjectAltName: host "mirror.olnevhost.net" matched cert's "mirror.olnevhost.net"
*  issuer: C=US; ST=TX; L=Houston; O=cPanel, Inc.; CN=cPanel, Inc. Certification Authority
*  SSL certificate verify ok.
} [5 bytes data]
> GET /pub/apache/spark/spark-3.0.0/spark-3.0.0-bin-hadoop2.7.tgz HTTP/1.1
> Host: mirror.olnevhost.net
> User-Agent: curl/7.49.0
> Accept: */*
> 
{ [5 bytes data]
< HTTP/1.1 200 OK
< Date: Fri, 07 Aug 2020 00:31:40 GMT
< Server: Apache
< Last-Modified: Sat, 06 Jun 2020 13:35:40 GMT
< Accept-Ranges: bytes
< Content-Length: 220272364
< Content-Type: application/x-gzip
< 
{ [5 bytes data]

  0  210M    0 32768    0     0  22059      0  2:46:25  0:00:01  2:46:24 22059
  0  210M    0 2048k    0     0   832k      0  0:04:18  0:00:02  0:04:16 2069k
  4  210M    4 10.3M    0     0  2836k      0  0:01:15  0:00:03  0:01:12 4683k
  6  210M    6 12.9M    0     0  2962k      0  0:01:12  0:00:04  0:01:08 4422k
  7  210M    7 16.0M    0     0  2991k      0  0:01:11  0:00:05  0:01:06 4092k
 11  210M   11 23.7M    0     0  3757k      0  0:00:57  0:00:06  0:00:51 4871k
 14  210M   14 30.7M    0     0  4207k      0  0:00:51  0:00:07  0:00:44 5860k
 17  210M   17 36.8M    0     0  4463k      0  0:00:48  0:00:08  0:00:40 5758k
 20  210M   20 43.4M    0     0  4688k      0  0:00:45  0:00:09  0:00:36 6234k
 23  210M   23 50.0M    0     0  4896k      0  0:00:43  0:00:10  0:00:33 7002k
 26  210M   26 56.0M    0     0  5011k      0  0:00:42  0:00:11  0:00:31 6633k
 29  210M   29 61.1M    0     0  5017k      0  0:00:42  0:00:12  0:00:30 6232k
 31  210M   31 66.5M    0     0  5052k      0  0:00:42  0:00:13  0:00:29 6043k
 34  210M   34 72.2M    0     0  5099k      0  0:00:42  0:00:14  0:00:28 5875k
 37  210M   37 77.9M    0     0  5159k      0  0:00:41  0:00:15  0:00:26 5711k
 39  210M   39 83.7M    0     0  5211k      0  0:00:41  0:00:16  0:00:25 5669k
 42  210M   42 89.6M    0     0  5251k      0  0:00:40  0:00:17  0:00:23 5834k
 45  210M   45 95.5M    0     0  5298k      0  0:00:40  0:00:18  0:00:22 5966k
 47  210M   47  100M    0     0  5304k      0  0:00:40  0:00:19  0:00:21 5905k
 50  210M   50  106M    0     0  5333k      0  0:00:40  0:00:20  0:00:20 5869k
 53  210M   53  112M    0     0  5367k      0  0:00:40  0:00:21  0:00:19 5880k
 55  210M   55  117M    0     0  5361k      0  0:00:40  0:00:22  0:00:18 5746k
 57  210M   57  121M    0     0  5294k      0  0:00:40  0:00:23  0:00:17 5279k
 59  210M   59  125M    0     0  5233k      0  0:00:41  0:00:24  0:00:17 4954k
 61  210M   61  128M    0     0  5183k      0  0:00:41  0:00:25  0:00:16 4570k
 63  210M   63  132M    0     0  5125k      0  0:00:41  0:00:26  0:00:15 4081k
 64  210M   64  136M    0     0  5085k      0  0:00:42  0:00:27  0:00:15 3845k
 66  210M   66  139M    0     0  5020k      0  0:00:42  0:00:28  0:00:14 3734k
 68  210M   68  142M    0     0  4967k      0  0:00:43  0:00:29  0:00:14 3664k
 69  210M   69  146M    0     0  4923k      0  0:00:43  0:00:30  0:00:13 3605k
 71  210M   71  150M    0     0  4892k      0  0:00:43  0:00:31  0:00:12 3662k
 73  210M   73  154M    0     0  4863k      0  0:00:44  0:00:32  0:00:12 3650k
 75  210M   75  157M    0     0  4826k      0  0:00:44  0:00:33  0:00:11 3718k
 76  210M   76  160M    0     0  4777k      0  0:00:45  0:00:34  0:00:11 3659k
 77  210M   77  163M    0     0  4727k      0  0:00:45  0:00:35  0:00:10 3529k
 79  210M   79  166M    0     0  4688k      0  0:00:45  0:00:36  0:00:09 3410k
 81  210M   81  170M    0     0  4654k      0  0:00:46  0:00:37  0:00:09 3294k
 82  210M   82  173M    0     0  4625k      0  0:00:46  0:00:38  0:00:08 3280k
 84  210M   84  176M    0     0  4578k      0  0:00:46  0:00:39  0:00:07 3222k
 85  210M   85  179M    0     0  4546k      0  0:00:47  0:00:40  0:00:07 3266k
 86  210M   86  182M    0     0  4507k      0  0:00:47  0:00:41  0:00:06 3186k
 88  210M   88  185M    0     0  4477k      0  0:00:48  0:00:42  0:00:06 3144k
 89  210M   89  188M    0     0  4449k      0  0:00:48  0:00:43  0:00:05 3091k
 91  210M   91  191M    0     0  4416k      0  0:00:48  0:00:44  0:00:04 3115k
 92  210M   92  194M    0     0  4374k      0  0:00:49  0:00:45  0:00:04 2981k
 93  210M   93  196M    0     0  4339k      0  0:00:49  0:00:46  0:00:03 2947k
 95  210M   95  199M    0     0  4310k      0  0:00:49  0:00:47  0:00:02 2887k
 96  210M   96  202M    0     0  4281k      0  0:00:50  0:00:48  0:00:02 2818k
 97  210M   97  205M    0     0  4253k      0  0:00:50  0:00:49  0:00:01 2807k
 99  210M   99  208M    0     0  4227k      0  0:00:50  0:00:50 --:--:-- 2881k
100  210M  100  210M    0     0  4206k      0  0:00:51  0:00:51 --:--:-- 2877k
* Connection #1 to host mirror.olnevhost.net left intact
+ tar xzvf spark-3.0.0-bin-hadoop2.7.tgz
spark-3.0.0-bin-hadoop2.7/
spark-3.0.0-bin-hadoop2.7/NOTICE
spark-3.0.0-bin-hadoop2.7/kubernetes/
spark-3.0.0-bin-hadoop2.7/kubernetes/tests/
spark-3.0.0-bin-hadoop2.7/kubernetes/tests/worker_memory_check.py
spark-3.0.0-bin-hadoop2.7/kubernetes/tests/py_container_checks.py
spark-3.0.0-bin-hadoop2.7/kubernetes/tests/pyfiles.py
spark-3.0.0-bin-hadoop2.7/kubernetes/dockerfiles/
spark-3.0.0-bin-hadoop2.7/kubernetes/dockerfiles/spark/
spark-3.0.0-bin-hadoop2.7/kubernetes/dockerfiles/spark/entrypoint.sh
spark-3.0.0-bin-hadoop2.7/kubernetes/dockerfiles/spark/bindings/
spark-3.0.0-bin-hadoop2.7/kubernetes/dockerfiles/spark/bindings/R/
spark-3.0.0-bin-hadoop2.7/kubernetes/dockerfiles/spark/bindings/R/Dockerfile
spark-3.0.0-bin-hadoop2.7/kubernetes/dockerfiles/spark/bindings/python/
spark-3.0.0-bin-hadoop2.7/kubernetes/dockerfiles/spark/bindings/python/Dockerfile
spark-3.0.0-bin-hadoop2.7/kubernetes/dockerfiles/spark/Dockerfile
spark-3.0.0-bin-hadoop2.7/jars/
spark-3.0.0-bin-hadoop2.7/jars/jackson-xc-1.9.13.jar
spark-3.0.0-bin-hadoop2.7/jars/commons-digester-1.8.jar
spark-3.0.0-bin-hadoop2.7/jars/api-util-1.0.0-M20.jar
spark-3.0.0-bin-hadoop2.7/jars/hive-vector-code-gen-2.3.7.jar
spark-3.0.0-bin-hadoop2.7/jars/derby-10.12.1.1.jar
spark-3.0.0-bin-hadoop2.7/jars/commons-beanutils-1.9.4.jar
spark-3.0.0-bin-hadoop2.7/jars/httpcore-4.4.12.jar
spark-3.0.0-bin-hadoop2.7/jars/hadoop-yarn-api-2.7.4.jar
spark-3.0.0-bin-hadoop2.7/jars/scala-library-2.12.10.jar
spark-3.0.0-bin-hadoop2.7/jars/parquet-format-2.4.0.jar
spark-3.0.0-bin-hadoop2.7/jars/kryo-shaded-4.0.2.jar
spark-3.0.0-bin-hadoop2.7/jars/xercesImpl-2.12.0.jar
spark-3.0.0-bin-hadoop2.7/jars/commons-logging-1.1.3.jar
spark-3.0.0-bin-hadoop2.7/jars/okio-1.15.0.jar
spark-3.0.0-bin-hadoop2.7/jars/commons-compiler-3.0.16.jar
spark-3.0.0-bin-hadoop2.7/jars/jdo-api-3.0.1.jar
spark-3.0.0-bin-hadoop2.7/jars/spire-macros_2.12-0.17.0-M1.jar
spark-3.0.0-bin-hadoop2.7/jars/arrow-memory-0.15.1.jar
spark-3.0.0-bin-hadoop2.7/jars/JLargeArrays-1.5.jar
spark-3.0.0-bin-hadoop2.7/jars/jsp-api-2.1.jar
spark-3.0.0-bin-hadoop2.7/jars/logging-interceptor-3.12.6.jar
spark-3.0.0-bin-hadoop2.7/jars/javax.servlet-api-3.1.0.jar
spark-3.0.0-bin-hadoop2.7/jars/jcl-over-slf4j-1.7.30.jar
spark-3.0.0-bin-hadoop2.7/jars/hive-cli-2.3.7.jar
spark-3.0.0-bin-hadoop2.7/jars/apacheds-i18n-2.0.0-M15.jar
spark-3.0.0-bin-hadoop2.7/jars/parquet-common-1.10.1.jar
spark-3.0.0-bin-hadoop2.7/jars/stax-api-1.0.1.jar
spark-3.0.0-bin-hadoop2.7/jars/jackson-dataformat-yaml-2.10.0.jar
spark-3.0.0-bin-hadoop2.7/jars/algebra_2.12-2.0.0-M2.jar
spark-3.0.0-bin-hadoop2.7/jars/spark-catalyst_2.12-3.0.0.jar
spark-3.0.0-bin-hadoop2.7/jars/hadoop-annotations-2.7.4.jar
spark-3.0.0-bin-hadoop2.7/jars/guice-servlet-3.0.jar
spark-3.0.0-bin-hadoop2.7/jars/kubernetes-client-4.9.2.jar
spark-3.0.0-bin-hadoop2.7/jars/spire-util_2.12-0.17.0-M1.jar
spark-3.0.0-bin-hadoop2.7/jars/jakarta.activation-api-1.2.1.jar
spark-3.0.0-bin-hadoop2.7/jars/spark-kubernetes_2.12-3.0.0.jar
spark-3.0.0-bin-hadoop2.7/jars/jline-2.14.6.jar
spark-3.0.0-bin-hadoop2.7/jars/breeze_2.12-1.0.jar
spark-3.0.0-bin-hadoop2.7/jars/metrics-jvm-4.1.1.jar
spark-3.0.0-bin-hadoop2.7/jars/dropwizard-metrics-hadoop-metrics2-reporter-0.1.2.jar
spark-3.0.0-bin-hadoop2.7/jars/machinist_2.12-0.6.8.jar
spark-3.0.0-bin-hadoop2.7/jars/scala-compiler-2.12.10.jar
spark-3.0.0-bin-hadoop2.7/jars/commons-pool-1.5.4.jar
spark-3.0.0-bin-hadoop2.7/jars/arrow-format-0.15.1.jar
spark-3.0.0-bin-hadoop2.7/jars/spark-kvstore_2.12-3.0.0.jar
spark-3.0.0-bin-hadoop2.7/jars/jta-1.1.jar
spark-3.0.0-bin-hadoop2.7/jars/istack-commons-runtime-3.0.8.jar
spark-3.0.0-bin-hadoop2.7/jars/metrics-graphite-4.1.1.jar
spark-3.0.0-bin-hadoop2.7/jars/hadoop-hdfs-2.7.4.jar
spark-3.0.0-bin-hadoop2.7/jars/commons-collections-3.2.2.jar
spark-3.0.0-bin-hadoop2.7/jars/audience-annotations-0.5.0.jar
spark-3.0.0-bin-hadoop2.7/jars/jpam-1.1.jar
spark-3.0.0-bin-hadoop2.7/jars/jakarta.annotation-api-1.3.5.jar
spark-3.0.0-bin-hadoop2.7/jars/spark-sql_2.12-3.0.0.jar
spark-3.0.0-bin-hadoop2.7/jars/xmlenc-0.52.jar
spark-3.0.0-bin-hadoop2.7/jars/api-asn1-api-1.0.0-M20.jar
spark-3.0.0-bin-hadoop2.7/jars/py4j-0.10.9.jar
spark-3.0.0-bin-hadoop2.7/jars/hadoop-mapreduce-client-common-2.7.4.jar
spark-3.0.0-bin-hadoop2.7/jars/spire-platform_2.12-0.17.0-M1.jar
spark-3.0.0-bin-hadoop2.7/jars/avro-1.8.2.jar
spark-3.0.0-bin-hadoop2.7/jars/curator-client-2.7.1.jar
spark-3.0.0-bin-hadoop2.7/jars/antlr4-runtime-4.7.1.jar
spark-3.0.0-bin-hadoop2.7/jars/javax.inject-1.jar
spark-3.0.0-bin-hadoop2.7/jars/jersey-media-jaxb-2.30.jar
spark-3.0.0-bin-hadoop2.7/jars/commons-lang3-3.9.jar
spark-3.0.0-bin-hadoop2.7/jars/univocity-parsers-2.8.3.jar
spark-3.0.0-bin-hadoop2.7/jars/javax.jdo-3.2.0-m3.jar
spark-3.0.0-bin-hadoop2.7/jars/hadoop-auth-2.7.4.jar
spark-3.0.0-bin-hadoop2.7/jars/commons-io-2.4.jar
spark-3.0.0-bin-hadoop2.7/jars/spark-tags_2.12-3.0.0.jar
spark-3.0.0-bin-hadoop2.7/jars/objenesis-2.5.1.jar
spark-3.0.0-bin-hadoop2.7/jars/paranamer-2.8.jar
spark-3.0.0-bin-hadoop2.7/jars/cats-kernel_2.12-2.0.0-M4.jar
spark-3.0.0-bin-hadoop2.7/jars/flatbuffers-java-1.9.0.jar
spark-3.0.0-bin-hadoop2.7/jars/jersey-server-2.30.jar
spark-3.0.0-bin-hadoop2.7/jars/stream-2.9.6.jar
spark-3.0.0-bin-hadoop2.7/jars/datanucleus-api-jdo-4.2.4.jar
spark-3.0.0-bin-hadoop2.7/jars/gson-2.2.4.jar
spark-3.0.0-bin-hadoop2.7/jars/xml-apis-1.4.01.jar
spark-3.0.0-bin-hadoop2.7/jars/apacheds-kerberos-codec-2.0.0-M15.jar
spark-3.0.0-bin-hadoop2.7/jars/hadoop-mapreduce-client-shuffle-2.7.4.jar
spark-3.0.0-bin-hadoop2.7/jars/hive-jdbc-2.3.7.jar
spark-3.0.0-bin-hadoop2.7/jars/spark-hive_2.12-3.0.0.jar
spark-3.0.0-bin-hadoop2.7/jars/hive-exec-2.3.7-core.jar
spark-3.0.0-bin-hadoop2.7/jars/spark-network-common_2.12-3.0.0.jar
spark-3.0.0-bin-hadoop2.7/jars/opencsv-2.3.jar
spark-3.0.0-bin-hadoop2.7/jars/avro-mapred-1.8.2-hadoop2.jar
spark-3.0.0-bin-hadoop2.7/jars/jsr305-3.0.0.jar
spark-3.0.0-bin-hadoop2.7/jars/macro-compat_2.12-1.1.1.jar
spark-3.0.0-bin-hadoop2.7/jars/spark-mesos_2.12-3.0.0.jar
spark-3.0.0-bin-hadoop2.7/jars/commons-dbcp-1.4.jar
spark-3.0.0-bin-hadoop2.7/jars/jersey-container-servlet-core-2.30.jar
spark-3.0.0-bin-hadoop2.7/jars/orc-core-1.5.10.jar
spark-3.0.0-bin-hadoop2.7/jars/hk2-api-2.6.1.jar
spark-3.0.0-bin-hadoop2.7/jars/parquet-jackson-1.10.1.jar
spark-3.0.0-bin-hadoop2.7/jars/mesos-1.4.0-shaded-protobuf.jar
spark-3.0.0-bin-hadoop2.7/jars/spark-streaming_2.12-3.0.0.jar
spark-3.0.0-bin-hadoop2.7/jars/chill-java-0.9.5.jar
spark-3.0.0-bin-hadoop2.7/jars/automaton-1.11-8.jar
spark-3.0.0-bin-hadoop2.7/jars/commons-lang-2.6.jar
spark-3.0.0-bin-hadoop2.7/jars/jackson-annotations-2.10.0.jar
spark-3.0.0-bin-hadoop2.7/jars/hk2-utils-2.6.1.jar
spark-3.0.0-bin-hadoop2.7/jars/velocity-1.5.jar
spark-3.0.0-bin-hadoop2.7/jars/htrace-core-3.1.0-incubating.jar
spark-3.0.0-bin-hadoop2.7/jars/jul-to-slf4j-1.7.30.jar
spark-3.0.0-bin-hadoop2.7/jars/JTransforms-3.1.jar
spark-3.0.0-bin-hadoop2.7/jars/json4s-ast_2.12-3.6.6.jar
spark-3.0.0-bin-hadoop2.7/jars/jersey-client-2.30.jar
spark-3.0.0-bin-hadoop2.7/jars/httpclient-4.5.6.jar
spark-3.0.0-bin-hadoop2.7/jars/spark-hive-thriftserver_2.12-3.0.0.jar
spark-3.0.0-bin-hadoop2.7/jars/jetty-sslengine-6.1.26.jar
spark-3.0.0-bin-hadoop2.7/jars/spark-graphx_2.12-3.0.0.jar
spark-3.0.0-bin-hadoop2.7/jars/spark-yarn_2.12-3.0.0.jar
spark-3.0.0-bin-hadoop2.7/jars/spire_2.12-0.17.0-M1.jar
spark-3.0.0-bin-hadoop2.7/jars/jersey-hk2-2.30.jar
spark-3.0.0-bin-hadoop2.7/jars/commons-math3-3.4.1.jar
spark-3.0.0-bin-hadoop2.7/jars/xbean-asm7-shaded-4.15.jar
spark-3.0.0-bin-hadoop2.7/jars/jakarta.validation-api-2.0.2.jar
spark-3.0.0-bin-hadoop2.7/jars/parquet-encoding-1.10.1.jar
spark-3.0.0-bin-hadoop2.7/jars/slf4j-log4j12-1.7.30.jar
spark-3.0.0-bin-hadoop2.7/jars/hadoop-mapreduce-client-app-2.7.4.jar
spark-3.0.0-bin-hadoop2.7/jars/spark-mllib_2.12-3.0.0.jar
spark-3.0.0-bin-hadoop2.7/jars/zstd-jni-1.4.4-3.jar
spark-3.0.0-bin-hadoop2.7/jars/slf4j-api-1.7.30.jar
spark-3.0.0-bin-hadoop2.7/jars/commons-compress-1.8.1.jar
spark-3.0.0-bin-hadoop2.7/jars/spark-repl_2.12-3.0.0.jar
spark-3.0.0-bin-hadoop2.7/jars/hive-shims-0.23-2.3.7.jar
spark-3.0.0-bin-hadoop2.7/jars/guava-14.0.1.jar
spark-3.0.0-bin-hadoop2.7/jars/stax-api-1.0-2.jar
spark-3.0.0-bin-hadoop2.7/jars/zjsonpatch-0.3.0.jar
spark-3.0.0-bin-hadoop2.7/jars/hive-storage-api-2.7.1.jar
spark-3.0.0-bin-hadoop2.7/jars/shapeless_2.12-2.3.3.jar
spark-3.0.0-bin-hadoop2.7/jars/kubernetes-model-common-4.9.2.jar
spark-3.0.0-bin-hadoop2.7/jars/oro-2.0.8.jar
spark-3.0.0-bin-hadoop2.7/jars/hadoop-yarn-client-2.7.4.jar
spark-3.0.0-bin-hadoop2.7/jars/libfb303-0.9.3.jar
spark-3.0.0-bin-hadoop2.7/jars/core-1.1.2.jar
spark-3.0.0-bin-hadoop2.7/jars/jersey-container-servlet-2.30.jar
spark-3.0.0-bin-hadoop2.7/jars/datanucleus-rdbms-4.1.19.jar
spark-3.0.0-bin-hadoop2.7/jars/super-csv-2.2.0.jar
spark-3.0.0-bin-hadoop2.7/jars/compress-lzf-1.0.3.jar
spark-3.0.0-bin-hadoop2.7/jars/commons-crypto-1.0.0.jar
spark-3.0.0-bin-hadoop2.7/jars/jackson-module-paranamer-2.10.0.jar
spark-3.0.0-bin-hadoop2.7/jars/aopalliance-1.0.jar
spark-3.0.0-bin-hadoop2.7/jars/osgi-resource-locator-1.0.3.jar
spark-3.0.0-bin-hadoop2.7/jars/spark-unsafe_2.12-3.0.0.jar
spark-3.0.0-bin-hadoop2.7/jars/jackson-module-scala_2.12-2.10.0.jar
spark-3.0.0-bin-hadoop2.7/jars/hive-shims-2.3.7.jar
spark-3.0.0-bin-hadoop2.7/jars/hadoop-yarn-server-common-2.7.4.jar
spark-3.0.0-bin-hadoop2.7/jars/json-1.8.jar
spark-3.0.0-bin-hadoop2.7/jars/antlr-runtime-3.5.2.jar
spark-3.0.0-bin-hadoop2.7/jars/threeten-extra-1.5.0.jar
spark-3.0.0-bin-hadoop2.7/jars/jetty-6.1.26.jar
spark-3.0.0-bin-hadoop2.7/jars/jackson-module-jaxb-annotations-2.10.0.jar
spark-3.0.0-bin-hadoop2.7/jars/jersey-common-2.30.jar
spark-3.0.0-bin-hadoop2.7/jars/aircompressor-0.10.jar
spark-3.0.0-bin-hadoop2.7/jars/lz4-java-1.7.1.jar
spark-3.0.0-bin-hadoop2.7/jars/hadoop-client-2.7.4.jar
spark-3.0.0-bin-hadoop2.7/jars/activation-1.1.1.jar
spark-3.0.0-bin-hadoop2.7/jars/shims-0.7.45.jar
spark-3.0.0-bin-hadoop2.7/jars/libthrift-0.12.0.jar
spark-3.0.0-bin-hadoop2.7/jars/orc-mapreduce-1.5.10.jar
spark-3.0.0-bin-hadoop2.7/jars/HikariCP-2.5.1.jar
spark-3.0.0-bin-hadoop2.7/jars/generex-1.0.2.jar
spark-3.0.0-bin-hadoop2.7/jars/okhttp-3.12.6.jar
spark-3.0.0-bin-hadoop2.7/jars/snappy-java-1.1.7.5.jar
spark-3.0.0-bin-hadoop2.7/jars/breeze-macros_2.12-1.0.jar
spark-3.0.0-bin-hadoop2.7/jars/leveldbjni-all-1.8.jar
spark-3.0.0-bin-hadoop2.7/jars/jaxb-runtime-2.3.2.jar
spark-3.0.0-bin-hadoop2.7/jars/commons-httpclient-3.1.jar
spark-3.0.0-bin-hadoop2.7/jars/jackson-core-asl-1.9.13.jar
spark-3.0.0-bin-hadoop2.7/jars/scala-xml_2.12-1.2.0.jar
spark-3.0.0-bin-hadoop2.7/jars/hk2-locator-2.6.1.jar
spark-3.0.0-bin-hadoop2.7/jars/hadoop-common-2.7.4.jar
spark-3.0.0-bin-hadoop2.7/jars/curator-recipes-2.7.1.jar
spark-3.0.0-bin-hadoop2.7/jars/jackson-mapper-asl-1.9.13.jar
spark-3.0.0-bin-hadoop2.7/jars/hive-common-2.3.7.jar
spark-3.0.0-bin-hadoop2.7/jars/xz-1.5.jar
spark-3.0.0-bin-hadoop2.7/jars/ST4-4.0.4.jar
spark-3.0.0-bin-hadoop2.7/jars/hive-shims-scheduler-2.3.7.jar
spark-3.0.0-bin-hadoop2.7/jars/parquet-hadoop-1.10.1.jar
spark-3.0.0-bin-hadoop2.7/jars/chill_2.12-0.9.5.jar
spark-3.0.0-bin-hadoop2.7/jars/commons-configuration-1.6.jar
spark-3.0.0-bin-hadoop2.7/jars/jackson-databind-2.10.0.jar
spark-3.0.0-bin-hadoop2.7/jars/scala-reflect-2.12.10.jar
spark-3.0.0-bin-hadoop2.7/jars/joda-time-2.10.5.jar
spark-3.0.0-bin-hadoop2.7/jars/spark-network-shuffle_2.12-3.0.0.jar
spark-3.0.0-bin-hadoop2.7/jars/minlog-1.3.0.jar
spark-3.0.0-bin-hadoop2.7/jars/jakarta.ws.rs-api-2.1.6.jar
spark-3.0.0-bin-hadoop2.7/jars/orc-shims-1.5.10.jar
spark-3.0.0-bin-hadoop2.7/jars/aopalliance-repackaged-2.6.1.jar
spark-3.0.0-bin-hadoop2.7/jars/bonecp-0.8.0.RELEASE.jar
spark-3.0.0-bin-hadoop2.7/jars/jodd-core-3.5.2.jar
spark-3.0.0-bin-hadoop2.7/jars/hadoop-yarn-server-web-proxy-2.7.4.jar
spark-3.0.0-bin-hadoop2.7/jars/jackson-core-2.10.0.jar
spark-3.0.0-bin-hadoop2.7/jars/protobuf-java-2.5.0.jar
spark-3.0.0-bin-hadoop2.7/jars/commons-net-3.1.jar
spark-3.0.0-bin-hadoop2.7/jars/hadoop-mapreduce-client-jobclient-2.7.4.jar
spark-3.0.0-bin-hadoop2.7/jars/datanucleus-core-4.1.17.jar
spark-3.0.0-bin-hadoop2.7/jars/jackson-jaxrs-1.9.13.jar
spark-3.0.0-bin-hadoop2.7/jars/janino-3.0.16.jar
spark-3.0.0-bin-hadoop2.7/jars/spark-sketch_2.12-3.0.0.jar
spark-3.0.0-bin-hadoop2.7/jars/hive-shims-common-2.3.7.jar
spark-3.0.0-bin-hadoop2.7/jars/javolution-5.5.1.jar
spark-3.0.0-bin-hadoop2.7/jars/transaction-api-1.1.jar
spark-3.0.0-bin-hadoop2.7/jars/jackson-datatype-jsr310-2.10.3.jar
spark-3.0.0-bin-hadoop2.7/jars/spark-mllib-local_2.12-3.0.0.jar
spark-3.0.0-bin-hadoop2.7/jars/jaxb-api-2.2.2.jar
spark-3.0.0-bin-hadoop2.7/jars/commons-cli-1.2.jar
spark-3.0.0-bin-hadoop2.7/jars/jakarta.inject-2.6.1.jar
spark-3.0.0-bin-hadoop2.7/jars/metrics-jmx-4.1.1.jar
spark-3.0.0-bin-hadoop2.7/jars/arrow-vector-0.15.1.jar
spark-3.0.0-bin-hadoop2.7/jars/jakarta.xml.bind-api-2.3.2.jar
spark-3.0.0-bin-hadoop2.7/jars/commons-codec-1.10.jar
spark-3.0.0-bin-hadoop2.7/jars/hadoop-yarn-common-2.7.4.jar
spark-3.0.0-bin-hadoop2.7/jars/curator-framework-2.7.1.jar
spark-3.0.0-bin-hadoop2.7/jars/arpack_combined_all-0.1.jar
spark-3.0.0-bin-hadoop2.7/jars/hive-metastore-2.3.7.jar
spark-3.0.0-bin-hadoop2.7/jars/hive-beeline-2.3.7.jar
spark-3.0.0-bin-hadoop2.7/jars/metrics-core-4.1.1.jar
spark-3.0.0-bin-hadoop2.7/jars/hive-llap-common-2.3.7.jar
spark-3.0.0-bin-hadoop2.7/jars/netty-all-4.1.47.Final.jar
spark-3.0.0-bin-hadoop2.7/jars/javassist-3.25.0-GA.jar
spark-3.0.0-bin-hadoop2.7/jars/scala-collection-compat_2.12-2.1.1.jar
spark-3.0.0-bin-hadoop2.7/jars/parquet-column-1.10.1.jar
spark-3.0.0-bin-hadoop2.7/jars/jetty-util-6.1.26.jar
spark-3.0.0-bin-hadoop2.7/jars/kubernetes-model-4.9.2.jar
spark-3.0.0-bin-hadoop2.7/jars/avro-ipc-1.8.2.jar
spark-3.0.0-bin-hadoop2.7/jars/spark-core_2.12-3.0.0.jar
spark-3.0.0-bin-hadoop2.7/jars/guice-3.0.jar
spark-3.0.0-bin-hadoop2.7/jars/commons-text-1.6.jar
spark-3.0.0-bin-hadoop2.7/jars/json4s-scalap_2.12-3.6.6.jar
spark-3.0.0-bin-hadoop2.7/jars/metrics-json-4.1.1.jar
spark-3.0.0-bin-hadoop2.7/jars/snakeyaml-1.24.jar
spark-3.0.0-bin-hadoop2.7/jars/json4s-jackson_2.12-3.6.6.jar
spark-3.0.0-bin-hadoop2.7/jars/ivy-2.4.0.jar
spark-3.0.0-bin-hadoop2.7/jars/hadoop-mapreduce-client-core-2.7.4.jar
spark-3.0.0-bin-hadoop2.7/jars/json4s-core_2.12-3.6.6.jar
spark-3.0.0-bin-hadoop2.7/jars/spark-tags_2.12-3.0.0-tests.jar
spark-3.0.0-bin-hadoop2.7/jars/pyrolite-4.30.jar
spark-3.0.0-bin-hadoop2.7/jars/spark-launcher_2.12-3.0.0.jar
spark-3.0.0-bin-hadoop2.7/jars/log4j-1.2.17.jar
spark-3.0.0-bin-hadoop2.7/jars/hive-serde-2.3.7.jar
spark-3.0.0-bin-hadoop2.7/jars/scala-parser-combinators_2.12-1.1.2.jar
spark-3.0.0-bin-hadoop2.7/jars/RoaringBitmap-0.7.45.jar
spark-3.0.0-bin-hadoop2.7/jars/zookeeper-3.4.14.jar
spark-3.0.0-bin-hadoop2.7/data/
spark-3.0.0-bin-hadoop2.7/data/mllib/
spark-3.0.0-bin-hadoop2.7/data/mllib/sample_lda_data.txt
spark-3.0.0-bin-hadoop2.7/data/mllib/sample_libsvm_data.txt
spark-3.0.0-bin-hadoop2.7/data/mllib/sample_svm_data.txt
spark-3.0.0-bin-hadoop2.7/data/mllib/sample_multiclass_classification_data.txt
spark-3.0.0-bin-hadoop2.7/data/mllib/sample_linear_regression_data.txt
spark-3.0.0-bin-hadoop2.7/data/mllib/sample_lda_libsvm_data.txt
spark-3.0.0-bin-hadoop2.7/data/mllib/sample_fpgrowth.txt
spark-3.0.0-bin-hadoop2.7/data/mllib/sample_binary_classification_data.txt
spark-3.0.0-bin-hadoop2.7/data/mllib/sample_isotonic_regression_libsvm_data.txt
spark-3.0.0-bin-hadoop2.7/data/mllib/iris_libsvm.txt
spark-3.0.0-bin-hadoop2.7/data/mllib/sample_movielens_data.txt
spark-3.0.0-bin-hadoop2.7/data/mllib/als/
spark-3.0.0-bin-hadoop2.7/data/mllib/als/test.data
spark-3.0.0-bin-hadoop2.7/data/mllib/als/sample_movielens_ratings.txt
spark-3.0.0-bin-hadoop2.7/data/mllib/sample_kmeans_data.txt
spark-3.0.0-bin-hadoop2.7/data/mllib/pic_data.txt
spark-3.0.0-bin-hadoop2.7/data/mllib/images/
spark-3.0.0-bin-hadoop2.7/data/mllib/images/origin/
spark-3.0.0-bin-hadoop2.7/data/mllib/images/origin/kittens/
spark-3.0.0-bin-hadoop2.7/data/mllib/images/origin/kittens/54893.jpg
spark-3.0.0-bin-hadoop2.7/data/mllib/images/origin/kittens/not-image.txt
spark-3.0.0-bin-hadoop2.7/data/mllib/images/origin/kittens/DP802813.jpg
spark-3.0.0-bin-hadoop2.7/data/mllib/images/origin/kittens/29.5.a_b_EGDP022204.jpg
spark-3.0.0-bin-hadoop2.7/data/mllib/images/origin/kittens/DP153539.jpg
spark-3.0.0-bin-hadoop2.7/data/mllib/images/origin/license.txt
spark-3.0.0-bin-hadoop2.7/data/mllib/images/origin/multi-channel/
spark-3.0.0-bin-hadoop2.7/data/mllib/images/origin/multi-channel/BGRA.png
spark-3.0.0-bin-hadoop2.7/data/mllib/images/origin/multi-channel/BGRA_alpha_60.png
spark-3.0.0-bin-hadoop2.7/data/mllib/images/origin/multi-channel/grayscale.jpg
spark-3.0.0-bin-hadoop2.7/data/mllib/images/origin/multi-channel/chr30.4.184.jpg
spark-3.0.0-bin-hadoop2.7/data/mllib/images/partitioned/
spark-3.0.0-bin-hadoop2.7/data/mllib/images/partitioned/cls=multichannel/
spark-3.0.0-bin-hadoop2.7/data/mllib/images/partitioned/cls=multichannel/date=2018-01/
spark-3.0.0-bin-hadoop2.7/data/mllib/images/partitioned/cls=multichannel/date=2018-01/BGRA.png
spark-3.0.0-bin-hadoop2.7/data/mllib/images/partitioned/cls=multichannel/date=2018-01/BGRA_alpha_60.png
spark-3.0.0-bin-hadoop2.7/data/mllib/images/partitioned/cls=multichannel/date=2018-02/
spark-3.0.0-bin-hadoop2.7/data/mllib/images/partitioned/cls=multichannel/date=2018-02/grayscale.jpg
spark-3.0.0-bin-hadoop2.7/data/mllib/images/partitioned/cls=multichannel/date=2018-02/chr30.4.184.jpg
spark-3.0.0-bin-hadoop2.7/data/mllib/images/partitioned/cls=kittens/
spark-3.0.0-bin-hadoop2.7/data/mllib/images/partitioned/cls=kittens/date=2018-01/
spark-3.0.0-bin-hadoop2.7/data/mllib/images/partitioned/cls=kittens/date=2018-01/not-image.txt
spark-3.0.0-bin-hadoop2.7/data/mllib/images/partitioned/cls=kittens/date=2018-01/29.5.a_b_EGDP022204.jpg
spark-3.0.0-bin-hadoop2.7/data/mllib/images/partitioned/cls=kittens/date=2018-02/
spark-3.0.0-bin-hadoop2.7/data/mllib/images/partitioned/cls=kittens/date=2018-02/54893.jpg
spark-3.0.0-bin-hadoop2.7/data/mllib/images/partitioned/cls=kittens/date=2018-02/DP802813.jpg
spark-3.0.0-bin-hadoop2.7/data/mllib/images/partitioned/cls=kittens/date=2018-02/DP153539.jpg
spark-3.0.0-bin-hadoop2.7/data/mllib/images/license.txt
spark-3.0.0-bin-hadoop2.7/data/mllib/ridge-data/
spark-3.0.0-bin-hadoop2.7/data/mllib/ridge-data/lpsa.data
spark-3.0.0-bin-hadoop2.7/data/mllib/kmeans_data.txt
spark-3.0.0-bin-hadoop2.7/data/mllib/streaming_kmeans_data_test.txt
spark-3.0.0-bin-hadoop2.7/data/mllib/pagerank_data.txt
spark-3.0.0-bin-hadoop2.7/data/mllib/gmm_data.txt
spark-3.0.0-bin-hadoop2.7/data/graphx/
spark-3.0.0-bin-hadoop2.7/data/graphx/users.txt
spark-3.0.0-bin-hadoop2.7/data/graphx/followers.txt
spark-3.0.0-bin-hadoop2.7/data/streaming/
spark-3.0.0-bin-hadoop2.7/data/streaming/AFINN-111.txt
spark-3.0.0-bin-hadoop2.7/R/
spark-3.0.0-bin-hadoop2.7/R/lib/
spark-3.0.0-bin-hadoop2.7/R/lib/sparkr.zip
spark-3.0.0-bin-hadoop2.7/R/lib/SparkR/
spark-3.0.0-bin-hadoop2.7/R/lib/SparkR/tests/
spark-3.0.0-bin-hadoop2.7/R/lib/SparkR/tests/testthat/
spark-3.0.0-bin-hadoop2.7/R/lib/SparkR/tests/testthat/test_basic.R
spark-3.0.0-bin-hadoop2.7/R/lib/SparkR/DESCRIPTION
spark-3.0.0-bin-hadoop2.7/R/lib/SparkR/profile/
spark-3.0.0-bin-hadoop2.7/R/lib/SparkR/profile/shell.R
spark-3.0.0-bin-hadoop2.7/R/lib/SparkR/profile/general.R
spark-3.0.0-bin-hadoop2.7/R/lib/SparkR/INDEX
spark-3.0.0-bin-hadoop2.7/R/lib/SparkR/Meta/
spark-3.0.0-bin-hadoop2.7/R/lib/SparkR/Meta/features.rds
spark-3.0.0-bin-hadoop2.7/R/lib/SparkR/Meta/links.rds
spark-3.0.0-bin-hadoop2.7/R/lib/SparkR/Meta/nsInfo.rds
spark-3.0.0-bin-hadoop2.7/R/lib/SparkR/Meta/package.rds
spark-3.0.0-bin-hadoop2.7/R/lib/SparkR/Meta/vignette.rds
spark-3.0.0-bin-hadoop2.7/R/lib/SparkR/Meta/Rd.rds
spark-3.0.0-bin-hadoop2.7/R/lib/SparkR/Meta/hsearch.rds
spark-3.0.0-bin-hadoop2.7/R/lib/SparkR/help/
spark-3.0.0-bin-hadoop2.7/R/lib/SparkR/help/SparkR.rdb
spark-3.0.0-bin-hadoop2.7/R/lib/SparkR/help/aliases.rds
spark-3.0.0-bin-hadoop2.7/R/lib/SparkR/help/SparkR.rdx
spark-3.0.0-bin-hadoop2.7/R/lib/SparkR/help/AnIndex
spark-3.0.0-bin-hadoop2.7/R/lib/SparkR/help/paths.rds
spark-3.0.0-bin-hadoop2.7/R/lib/SparkR/R/
spark-3.0.0-bin-hadoop2.7/R/lib/SparkR/R/SparkR.rdb
spark-3.0.0-bin-hadoop2.7/R/lib/SparkR/R/SparkR.rdx
spark-3.0.0-bin-hadoop2.7/R/lib/SparkR/R/SparkR
spark-3.0.0-bin-hadoop2.7/R/lib/SparkR/NAMESPACE
spark-3.0.0-bin-hadoop2.7/R/lib/SparkR/doc/
spark-3.0.0-bin-hadoop2.7/R/lib/SparkR/doc/sparkr-vignettes.Rmd
spark-3.0.0-bin-hadoop2.7/R/lib/SparkR/doc/index.html
spark-3.0.0-bin-hadoop2.7/R/lib/SparkR/doc/sparkr-vignettes.html
spark-3.0.0-bin-hadoop2.7/R/lib/SparkR/doc/sparkr-vignettes.R
spark-3.0.0-bin-hadoop2.7/R/lib/SparkR/html/
spark-3.0.0-bin-hadoop2.7/R/lib/SparkR/html/00Index.html
spark-3.0.0-bin-hadoop2.7/R/lib/SparkR/html/R.css
spark-3.0.0-bin-hadoop2.7/R/lib/SparkR/worker/
spark-3.0.0-bin-hadoop2.7/R/lib/SparkR/worker/worker.R
spark-3.0.0-bin-hadoop2.7/R/lib/SparkR/worker/daemon.R
spark-3.0.0-bin-hadoop2.7/README.md
spark-3.0.0-bin-hadoop2.7/RELEASE
spark-3.0.0-bin-hadoop2.7/yarn/
spark-3.0.0-bin-hadoop2.7/yarn/spark-3.0.0-yarn-shuffle.jar
spark-3.0.0-bin-hadoop2.7/LICENSE
spark-3.0.0-bin-hadoop2.7/sbin/
spark-3.0.0-bin-hadoop2.7/sbin/stop-mesos-shuffle-service.sh
spark-3.0.0-bin-hadoop2.7/sbin/start-master.sh
spark-3.0.0-bin-hadoop2.7/sbin/spark-config.sh
spark-3.0.0-bin-hadoop2.7/sbin/start-history-server.sh
spark-3.0.0-bin-hadoop2.7/sbin/start-slaves.sh
spark-3.0.0-bin-hadoop2.7/sbin/spark-daemon.sh
spark-3.0.0-bin-hadoop2.7/sbin/stop-mesos-dispatcher.sh
spark-3.0.0-bin-hadoop2.7/sbin/start-mesos-shuffle-service.sh
spark-3.0.0-bin-hadoop2.7/sbin/slaves.sh
spark-3.0.0-bin-hadoop2.7/sbin/stop-history-server.sh
spark-3.0.0-bin-hadoop2.7/sbin/start-thriftserver.sh
spark-3.0.0-bin-hadoop2.7/sbin/stop-thriftserver.sh
spark-3.0.0-bin-hadoop2.7/sbin/start-slave.sh
spark-3.0.0-bin-hadoop2.7/sbin/start-all.sh
spark-3.0.0-bin-hadoop2.7/sbin/stop-slave.sh
spark-3.0.0-bin-hadoop2.7/sbin/spark-daemons.sh
spark-3.0.0-bin-hadoop2.7/sbin/stop-slaves.sh
spark-3.0.0-bin-hadoop2.7/sbin/stop-all.sh
spark-3.0.0-bin-hadoop2.7/sbin/start-mesos-dispatcher.sh
spark-3.0.0-bin-hadoop2.7/sbin/stop-master.sh
spark-3.0.0-bin-hadoop2.7/examples/
spark-3.0.0-bin-hadoop2.7/examples/src/
spark-3.0.0-bin-hadoop2.7/examples/src/main/
spark-3.0.0-bin-hadoop2.7/examples/src/main/r/
spark-3.0.0-bin-hadoop2.7/examples/src/main/r/ml/
spark-3.0.0-bin-hadoop2.7/examples/src/main/r/ml/survreg.R
spark-3.0.0-bin-hadoop2.7/examples/src/main/r/ml/glm.R
spark-3.0.0-bin-hadoop2.7/examples/src/main/r/ml/prefixSpan.R
spark-3.0.0-bin-hadoop2.7/examples/src/main/r/ml/powerIterationClustering.R
spark-3.0.0-bin-hadoop2.7/examples/src/main/r/ml/lda.R
spark-3.0.0-bin-hadoop2.7/examples/src/main/r/ml/kstest.R
spark-3.0.0-bin-hadoop2.7/examples/src/main/r/ml/isoreg.R
spark-3.0.0-bin-hadoop2.7/examples/src/main/r/ml/ml.R
spark-3.0.0-bin-hadoop2.7/examples/src/main/r/ml/naiveBayes.R
spark-3.0.0-bin-hadoop2.7/examples/src/main/r/ml/mlp.R
spark-3.0.0-bin-hadoop2.7/examples/src/main/r/ml/als.R
spark-3.0.0-bin-hadoop2.7/examples/src/main/r/ml/kmeans.R
spark-3.0.0-bin-hadoop2.7/examples/src/main/r/ml/svmLinear.R
spark-3.0.0-bin-hadoop2.7/examples/src/main/r/ml/logit.R
spark-3.0.0-bin-hadoop2.7/examples/src/main/r/ml/randomForest.R
spark-3.0.0-bin-hadoop2.7/examples/src/main/r/ml/gbt.R
spark-3.0.0-bin-hadoop2.7/examples/src/main/r/ml/decisionTree.R
spark-3.0.0-bin-hadoop2.7/examples/src/main/r/ml/gaussianMixture.R
spark-3.0.0-bin-hadoop2.7/examples/src/main/r/ml/bisectingKmeans.R
spark-3.0.0-bin-hadoop2.7/examples/src/main/r/ml/fpm.R
spark-3.0.0-bin-hadoop2.7/examples/src/main/r/dataframe.R
spark-3.0.0-bin-hadoop2.7/examples/src/main/r/RSparkSQLExample.R
spark-3.0.0-bin-hadoop2.7/examples/src/main/r/data-manipulation.R
spark-3.0.0-bin-hadoop2.7/examples/src/main/r/streaming/
spark-3.0.0-bin-hadoop2.7/examples/src/main/r/streaming/structured_network_wordcount.R
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/SparkPageRank.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/SkewedGroupByTest.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/AccumulatorMetricsTest.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/HdfsTest.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/Word2VecExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/DeveloperApiExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/MinHashLSHExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/IndexToStringExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/BisectingKMeansExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/CorrelationExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/MulticlassLogisticRegressionWithElasticNetExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/VectorSizeHintExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/NGramExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/BucketedRandomProjectionLSHExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/BinarizerExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/RandomForestExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/StandardScalerExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/LogisticRegressionExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/FeatureHasherExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/OneVsRestExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/StopWordsRemoverExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/LinearSVCExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/GaussianMixtureExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/MaxAbsScalerExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/GBTExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/IsotonicRegressionExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/ModelSelectionViaCrossValidationExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/EstimatorTransformerParamExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/DecisionTreeRegressionExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/RandomForestRegressorExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/PrefixSpanExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/KMeansExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/ModelSelectionViaTrainValidationSplitExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/LogisticRegressionSummaryExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/MultilayerPerceptronClassifierExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/PCAExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/DCTExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/FPGrowthExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/ElementwiseProductExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/GeneralizedLinearRegressionExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/CountVectorizerExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/MinMaxScalerExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/ChiSquareTestExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/LogisticRegressionWithElasticNetExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/FMRegressorExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/VectorSlicerExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/LinearRegressionExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/StringIndexerExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/GradientBoostedTreeRegressorExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/ALSExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/DecisionTreeClassificationExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/PolynomialExpansionExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/FMClassifierExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/UnaryTransformerExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/ImputerExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/TokenizerExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/DecisionTreeExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/GradientBoostedTreeClassifierExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/PowerIterationClusteringExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/SQLTransformerExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/SummarizerExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/DataFrameExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/BucketizerExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/TfIdfExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/AFTSurvivalRegressionExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/QuantileDiscretizerExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/OneHotEncoderExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/PipelineExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/InteractionExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/LDAExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/RFormulaExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/VectorIndexerExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/VectorAssemblerExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/NormalizerExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/ChiSqSelectorExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/NaiveBayesExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/RandomForestClassifierExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/LinearRegressionWithElasticNetExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ml/RobustScalerExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/LogQuery.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/SparkRemoteFileTest.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/ExceptionHandlingTest.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/pythonconverters/
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/pythonconverters/AvroConverters.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/BroadcastTest.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/SparkHdfsLR.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/Word2VecExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/GradientBoostedTreesRunner.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/RandomRDDGeneration.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/PMMLModelExportExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/BisectingKMeansExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/DecisionTreeRunner.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/MultiLabelMetricsExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/CorrelationsExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/LBFGSExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/TFIDFExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/StandardScalerExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/LogisticRegressionWithLBFGSExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/StreamingTestExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/BinaryClassification.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/DenseKMeans.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/GradientBoostingClassificationExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/RankingMetricsExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/GaussianMixtureExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/MultivariateSummarizer.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/IsotonicRegressionExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/PCAOnSourceVectorExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/Correlations.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/HypothesisTestingExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/DecisionTreeRegressionExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/AssociationRulesExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/StreamingLogisticRegression.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/SVDExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/PrefixSpanExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/KMeansExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/SparseNaiveBayes.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/AbstractParams.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/BinaryClassificationMetricsExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/SampledRDDs.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/FPGrowthExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/ElementwiseProductExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/RecommendationExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/TallSkinnySVD.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/HypothesisTestingKolmogorovSmirnovTestExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/GradientBoostingRegressionExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/StreamingKMeansExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/CosineSimilarity.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/RandomForestRegressionExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/StreamingLinearRegressionExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/StratifiedSamplingExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/DecisionTreeClassificationExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/TallSkinnyPCA.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/RandomForestClassificationExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/SimpleFPGrowth.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/LatentDirichletAllocationExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/KernelDensityEstimationExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/PowerIterationClusteringExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/SVMWithSGDExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/LDAExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/MovieLensALS.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/NormalizerExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/MulticlassMetricsExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/ChiSqSelectorExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/SummaryStatisticsExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/PCAOnRowMatrixExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/mllib/NaiveBayesExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/SparkTC.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/DriverSubmissionTest.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/MultiBroadcastTest.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/SparkLR.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/SparkPi.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/graphx/
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/graphx/ConnectedComponentsExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/graphx/LiveJournalPageRank.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/graphx/AggregateMessagesExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/graphx/SSSPExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/graphx/SynthBenchmark.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/graphx/TriangleCountingExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/graphx/PageRankExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/graphx/ComprehensiveExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/graphx/Analytics.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/SparkKMeans.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/streaming/
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/streaming/clickstream/
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/streaming/clickstream/PageViewGenerator.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/streaming/clickstream/PageViewStream.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/streaming/DirectKafkaWordCount.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/streaming/HdfsWordCount.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/streaming/DirectKerberizedKafkaWordCount.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/streaming/RecoverableNetworkWordCount.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/streaming/NetworkWordCount.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/streaming/QueueStream.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/streaming/SqlNetworkWordCount.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/streaming/CustomReceiver.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/streaming/RawNetworkGrep.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/streaming/StatefulNetworkWordCount.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/streaming/StreamingExamples.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/LocalLR.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/LocalKMeans.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/GroupByTest.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/LocalALS.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/sql/
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/sql/SimpleTypedAggregator.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/sql/UserDefinedUntypedAggregation.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/sql/hive/
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/sql/hive/SparkHiveExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/sql/RDDRelation.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/sql/SparkSQLExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/sql/SQLDataSourceExample.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/sql/streaming/
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/sql/streaming/StructuredKerberizedKafkaWordCount.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/sql/streaming/StructuredNetworkWordCount.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/sql/streaming/StructuredNetworkWordCountWindowed.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/sql/streaming/StructuredKafkaWordCount.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/sql/streaming/StructuredSessionization.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/sql/UserDefinedTypedAggregation.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/sql/UserDefinedScalar.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/SimpleSkewedGroupByTest.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/LocalFileLR.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/LocalPi.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/DFSReadWriteTest.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/scala/org/apache/spark/examples/SparkALS.scala
spark-3.0.0-bin-hadoop2.7/examples/src/main/resources/
spark-3.0.0-bin-hadoop2.7/examples/src/main/resources/people.json
spark-3.0.0-bin-hadoop2.7/examples/src/main/resources/users.avro
spark-3.0.0-bin-hadoop2.7/examples/src/main/resources/people.csv
spark-3.0.0-bin-hadoop2.7/examples/src/main/resources/users.parquet
spark-3.0.0-bin-hadoop2.7/examples/src/main/resources/users.orc
spark-3.0.0-bin-hadoop2.7/examples/src/main/resources/dir1/
spark-3.0.0-bin-hadoop2.7/examples/src/main/resources/dir1/file1.parquet
spark-3.0.0-bin-hadoop2.7/examples/src/main/resources/dir1/dir2/
spark-3.0.0-bin-hadoop2.7/examples/src/main/resources/dir1/dir2/file2.parquet
spark-3.0.0-bin-hadoop2.7/examples/src/main/resources/dir1/file3.json
spark-3.0.0-bin-hadoop2.7/examples/src/main/resources/user.avsc
spark-3.0.0-bin-hadoop2.7/examples/src/main/resources/full_user.avsc
spark-3.0.0-bin-hadoop2.7/examples/src/main/resources/kv1.txt
spark-3.0.0-bin-hadoop2.7/examples/src/main/resources/people.txt
spark-3.0.0-bin-hadoop2.7/examples/src/main/resources/employees.json
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaStringIndexerExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaChiSqSelectorExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaLabeledDocument.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaLogisticRegressionWithElasticNetExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaPolynomialExpansionExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaTfIdfExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaBucketizerExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaLogisticRegressionSummaryExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaSummarizerExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaQuantileDiscretizerExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaBinarizerExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaOneHotEncoderExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaStandardScalerExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaDCTExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaDecisionTreeRegressionExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaRandomForestClassifierExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaOneVsRestExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaGeneralizedLinearRegressionExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaGaussianMixtureExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaWord2VecExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaNormalizerExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaLDAExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaCountVectorizerExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaMultilayerPerceptronClassifierExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaMinMaxScalerExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaCorrelationExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaNGramExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaImputerExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaMinHashLSHExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaVectorSizeHintExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaFMClassifierExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaFeatureHasherExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaModelSelectionViaTrainValidationSplitExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaSQLTransformerExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaKMeansExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaVectorAssemblerExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaGradientBoostedTreeRegressorExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaPrefixSpanExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaFMRegressorExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaNaiveBayesExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaMulticlassLogisticRegressionWithElasticNetExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaModelSelectionViaCrossValidationExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaDocument.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaGradientBoostedTreeClassifierExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaRandomForestRegressorExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaAFTSurvivalRegressionExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaIsotonicRegressionExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaElementwiseProductExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaALSExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaBucketedRandomProjectionLSHExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaVectorSlicerExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaTokenizerExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaRFormulaExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaEstimatorTransformerParamExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaPowerIterationClusteringExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaBisectingKMeansExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaMaxAbsScalerExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaDecisionTreeClassificationExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaPCAExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaPipelineExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaStopWordsRemoverExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaIndexToStringExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaFPGrowthExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaVectorIndexerExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaInteractionExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaChiSquareTestExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaRobustScalerExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaLinearRegressionWithElasticNetExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/ml/JavaLinearSVCExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/JavaWordCount.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/JavaHdfsLR.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/JavaStatusTrackerDemo.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaChiSqSelectorExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaHypothesisTestingKolmogorovSmirnovTestExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaRandomForestRegressionExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaSimpleFPGrowth.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaRandomForestClassificationExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaMulticlassClassificationMetricsExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaKernelDensityEstimationExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaSummaryStatisticsExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaDecisionTreeRegressionExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaGradientBoostingClassificationExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaGaussianMixtureExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaStratifiedSamplingExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaSVDExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaAssociationRulesExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaALS.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaKMeansExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaSVMWithSGDExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaPrefixSpanExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaNaiveBayesExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaLogisticRegressionWithLBFGSExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaLBFGSExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaGradientBoostingRegressionExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaRankingMetricsExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaIsotonicRegressionExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaElementwiseProductExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaCorrelationsExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaPowerIterationClusteringExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaBisectingKMeansExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaDecisionTreeClassificationExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaPCAExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaRecommendationExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaLatentDirichletAllocationExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaHypothesisTestingExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaMultiLabelClassificationMetricsExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaBinaryClassificationMetricsExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/mllib/JavaStreamingTestExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/JavaPageRank.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/JavaLogQuery.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/streaming/
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/streaming/JavaStatefulNetworkWordCount.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/streaming/JavaCustomReceiver.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/streaming/JavaRecord.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/streaming/JavaNetworkWordCount.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/streaming/JavaDirectKerberizedKafkaWordCount.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/streaming/JavaDirectKafkaWordCount.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/streaming/JavaSqlNetworkWordCount.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/streaming/JavaRecoverableNetworkWordCount.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/streaming/JavaQueueStream.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/JavaSparkPi.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/sql/
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/sql/JavaUserDefinedScalar.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/sql/hive/
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/sql/hive/JavaSparkHiveExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/sql/JavaUserDefinedTypedAggregation.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/sql/JavaSQLDataSourceExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/sql/JavaSparkSQLExample.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/sql/JavaUserDefinedUntypedAggregation.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/sql/streaming/
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/sql/streaming/JavaStructuredKafkaWordCount.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/sql/streaming/JavaStructuredNetworkWordCountWindowed.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/sql/streaming/JavaStructuredSessionization.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/sql/streaming/JavaStructuredNetworkWordCount.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/sql/streaming/JavaStructuredKerberizedKafkaWordCount.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/java/org/apache/spark/examples/JavaTC.java
spark-3.0.0-bin-hadoop2.7/examples/src/main/scripts/
spark-3.0.0-bin-hadoop2.7/examples/src/main/scripts/getGpusResources.sh
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/kmeans.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/ml/
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/ml/dct_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/ml/count_vectorizer_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/ml/chisq_selector_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/ml/gradient_boosted_tree_regressor_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/ml/tf_idf_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/ml/cross_validator.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/ml/linear_regression_with_elastic_net.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/ml/normalizer_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/ml/fm_regressor_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/ml/polynomial_expansion_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/ml/pipeline_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/ml/generalized_linear_regression_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/ml/multilayer_perceptron_classification.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/ml/bisecting_k_means_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/ml/chi_square_test_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/ml/train_validation_split.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/ml/stopwords_remover_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/ml/linearsvc.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/ml/lda_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/ml/random_forest_regressor_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/ml/vector_assembler_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/ml/word2vec_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/ml/string_indexer_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/ml/decision_tree_classification_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/ml/index_to_string_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/ml/bucketizer_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/ml/vector_size_hint_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/ml/vector_indexer_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/ml/tokenizer_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/ml/robust_scaler_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/ml/standard_scaler_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/ml/kmeans_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/ml/power_iteration_clustering_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/ml/naive_bayes_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/ml/pca_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/ml/aft_survival_regression.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/ml/min_max_scaler_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/ml/elementwise_product_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/ml/dataframe_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/ml/n_gram_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/ml/rformula_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/ml/one_vs_rest_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/ml/als_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/ml/onehot_encoder_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/ml/vector_slicer_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/ml/logistic_regression_with_elastic_net.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/ml/sql_transformer.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/ml/multiclass_logistic_regression_with_elastic_net.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/ml/summarizer_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/ml/quantile_discretizer_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/ml/feature_hasher_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/ml/imputer_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/ml/bucketed_random_projection_lsh_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/ml/estimator_transformer_param_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/ml/gradient_boosted_tree_classifier_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/ml/logistic_regression_summary_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/ml/decision_tree_regression_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/ml/fm_classifier_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/ml/gaussian_mixture_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/ml/fpgrowth_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/ml/random_forest_classifier_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/ml/correlation_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/ml/min_hash_lsh_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/ml/binarizer_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/ml/prefixspan_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/ml/max_abs_scaler_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/ml/isotonic_regression_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/ml/interaction_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/logistic_regression.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/als.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/mllib/
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/mllib/word2vec.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/mllib/correlations_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/mllib/gradient_boosting_classification_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/mllib/kernel_density_estimation_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/mllib/hypothesis_testing_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/mllib/svd_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/mllib/kmeans.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/mllib/latent_dirichlet_allocation_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/mllib/tf_idf_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/mllib/correlations.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/mllib/random_forest_regression_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/mllib/normalizer_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/mllib/logistic_regression.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/mllib/multi_label_metrics_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/mllib/gradient_boosting_regression_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/mllib/random_forest_classification_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/mllib/streaming_linear_regression_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/mllib/sampled_rdds.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/mllib/bisecting_k_means_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/mllib/logistic_regression_with_lbfgs_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/mllib/k_means_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/mllib/streaming_k_means_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/mllib/word2vec_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/mllib/multi_class_metrics_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/mllib/decision_tree_classification_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/mllib/summary_statistics_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/mllib/binary_classification_metrics_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/mllib/standard_scaler_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/mllib/power_iteration_clustering_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/mllib/gaussian_mixture_model.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/mllib/regression_metrics_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/mllib/naive_bayes_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/mllib/elementwise_product_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/mllib/linear_regression_with_sgd_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/mllib/pca_rowmatrix_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/mllib/hypothesis_testing_kolmogorov_smirnov_test_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/mllib/random_rdd_generation.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/mllib/decision_tree_regression_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/mllib/gaussian_mixture_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/mllib/recommendation_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/mllib/fpgrowth_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/mllib/ranking_metrics_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/mllib/svm_with_sgd_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/mllib/isotonic_regression_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/mllib/stratified_sampling_example.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/wordcount.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/status_api_demo.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/pagerank.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/sort.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/transitive_closure.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/avro_inputformat.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/pi.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/streaming/
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/streaming/queue_stream.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/streaming/stateful_network_wordcount.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/streaming/network_wordjoinsentiments.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/streaming/sql_network_wordcount.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/streaming/network_wordcount.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/streaming/hdfs_wordcount.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/streaming/recoverable_network_wordcount.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/sql/
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/sql/datasource.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/sql/hive.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/sql/arrow.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/sql/streaming/
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/sql/streaming/structured_network_wordcount_windowed.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/sql/streaming/structured_network_wordcount.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/sql/streaming/structured_kafka_wordcount.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/sql/basic.py
spark-3.0.0-bin-hadoop2.7/examples/src/main/python/parquet_inputformat.py
spark-3.0.0-bin-hadoop2.7/examples/jars/
spark-3.0.0-bin-hadoop2.7/examples/jars/spark-examples_2.12-3.0.0.jar
spark-3.0.0-bin-hadoop2.7/examples/jars/scopt_2.12-3.7.1.jar
spark-3.0.0-bin-hadoop2.7/conf/
spark-3.0.0-bin-hadoop2.7/conf/slaves.template
spark-3.0.0-bin-hadoop2.7/conf/metrics.properties.template
spark-3.0.0-bin-hadoop2.7/conf/fairscheduler.xml.template
spark-3.0.0-bin-hadoop2.7/conf/log4j.properties.template
spark-3.0.0-bin-hadoop2.7/conf/spark-defaults.conf.template
spark-3.0.0-bin-hadoop2.7/conf/spark-env.sh.template
spark-3.0.0-bin-hadoop2.7/bin/
spark-3.0.0-bin-hadoop2.7/bin/sparkR.cmd
spark-3.0.0-bin-hadoop2.7/bin/sparkR
spark-3.0.0-bin-hadoop2.7/bin/spark-submit
spark-3.0.0-bin-hadoop2.7/bin/pyspark2.cmd
spark-3.0.0-bin-hadoop2.7/bin/spark-class
spark-3.0.0-bin-hadoop2.7/bin/pyspark.cmd
spark-3.0.0-bin-hadoop2.7/bin/spark-submit2.cmd
spark-3.0.0-bin-hadoop2.7/bin/load-spark-env.cmd
spark-3.0.0-bin-hadoop2.7/bin/spark-sql
spark-3.0.0-bin-hadoop2.7/bin/docker-image-tool.sh
spark-3.0.0-bin-hadoop2.7/bin/find-spark-home.cmd
spark-3.0.0-bin-hadoop2.7/bin/load-spark-env.sh
spark-3.0.0-bin-hadoop2.7/bin/pyspark
spark-3.0.0-bin-hadoop2.7/bin/spark-shell.cmd
spark-3.0.0-bin-hadoop2.7/bin/spark-shell2.cmd
spark-3.0.0-bin-hadoop2.7/bin/spark-submit.cmd
spark-3.0.0-bin-hadoop2.7/bin/beeline.cmd
spark-3.0.0-bin-hadoop2.7/bin/find-spark-home
spark-3.0.0-bin-hadoop2.7/bin/spark-class.cmd
spark-3.0.0-bin-hadoop2.7/bin/sparkR2.cmd
spark-3.0.0-bin-hadoop2.7/bin/beeline
spark-3.0.0-bin-hadoop2.7/bin/spark-class2.cmd
spark-3.0.0-bin-hadoop2.7/bin/spark-sql.cmd
spark-3.0.0-bin-hadoop2.7/bin/run-example
spark-3.0.0-bin-hadoop2.7/bin/spark-shell
spark-3.0.0-bin-hadoop2.7/bin/run-example.cmd
spark-3.0.0-bin-hadoop2.7/bin/spark-sql2.cmd
spark-3.0.0-bin-hadoop2.7/python/
spark-3.0.0-bin-hadoop2.7/python/.gitignore
spark-3.0.0-bin-hadoop2.7/python/run-tests-with-coverage
spark-3.0.0-bin-hadoop2.7/python/pylintrc
spark-3.0.0-bin-hadoop2.7/python/MANIFEST.in
spark-3.0.0-bin-hadoop2.7/python/README.md
spark-3.0.0-bin-hadoop2.7/python/test_coverage/
spark-3.0.0-bin-hadoop2.7/python/test_coverage/coverage_daemon.py
spark-3.0.0-bin-hadoop2.7/python/test_coverage/conf/
spark-3.0.0-bin-hadoop2.7/python/test_coverage/conf/spark-defaults.conf
spark-3.0.0-bin-hadoop2.7/python/test_coverage/sitecustomize.py
spark-3.0.0-bin-hadoop2.7/python/run-tests.py
spark-3.0.0-bin-hadoop2.7/python/setup.py
spark-3.0.0-bin-hadoop2.7/python/test_support/
spark-3.0.0-bin-hadoop2.7/python/test_support/userlibrary.py
spark-3.0.0-bin-hadoop2.7/python/test_support/hello/
spark-3.0.0-bin-hadoop2.7/python/test_support/hello/sub_hello/
spark-3.0.0-bin-hadoop2.7/python/test_support/hello/sub_hello/sub_hello.txt
spark-3.0.0-bin-hadoop2.7/python/test_support/hello/hello.txt
spark-3.0.0-bin-hadoop2.7/python/test_support/userlib-0.1.zip
spark-3.0.0-bin-hadoop2.7/python/test_support/SimpleHTTPServer.py
spark-3.0.0-bin-hadoop2.7/python/test_support/sql/
spark-3.0.0-bin-hadoop2.7/python/test_support/sql/people.json
spark-3.0.0-bin-hadoop2.7/python/test_support/sql/people_array.json
spark-3.0.0-bin-hadoop2.7/python/test_support/sql/people_array_utf16le.json
spark-3.0.0-bin-hadoop2.7/python/test_support/sql/text-test.txt
spark-3.0.0-bin-hadoop2.7/python/test_support/sql/ages.csv
spark-3.0.0-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/
spark-3.0.0-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2015/
spark-3.0.0-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2015/month=10/
spark-3.0.0-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2015/month=10/day=26/
spark-3.0.0-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2015/month=10/day=26/.part-r-00005.gz.parquet.crc
spark-3.0.0-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2015/month=10/day=26/part-r-00005.gz.parquet
spark-3.0.0-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2015/month=10/day=25/
spark-3.0.0-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2015/month=10/day=25/.part-r-00002.gz.parquet.crc
spark-3.0.0-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2015/month=10/day=25/.part-r-00004.gz.parquet.crc
spark-3.0.0-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2015/month=10/day=25/part-r-00004.gz.parquet
spark-3.0.0-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2015/month=10/day=25/part-r-00002.gz.parquet
spark-3.0.0-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2015/month=9/
spark-3.0.0-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2015/month=9/day=1/
spark-3.0.0-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2015/month=9/day=1/.part-r-00007.gz.parquet.crc
spark-3.0.0-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2015/month=9/day=1/part-r-00007.gz.parquet
spark-3.0.0-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/_metadata
spark-3.0.0-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2014/
spark-3.0.0-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2014/month=9/
spark-3.0.0-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2014/month=9/day=1/
spark-3.0.0-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2014/month=9/day=1/.part-r-00008.gz.parquet.crc
spark-3.0.0-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/year=2014/month=9/day=1/part-r-00008.gz.parquet
spark-3.0.0-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/_common_metadata
spark-3.0.0-bin-hadoop2.7/python/test_support/sql/parquet_partitioned/_SUCCESS
spark-3.0.0-bin-hadoop2.7/python/test_support/sql/orc_partitioned/
spark-3.0.0-bin-hadoop2.7/python/test_support/sql/orc_partitioned/b=1/
spark-3.0.0-bin-hadoop2.7/python/test_support/sql/orc_partitioned/b=1/c=1/
spark-3.0.0-bin-hadoop2.7/python/test_support/sql/orc_partitioned/b=1/c=1/part-r-00000-829af031-b970-49d6-ad39-30460a0be2c8.orc
spark-3.0.0-bin-hadoop2.7/python/test_support/sql/orc_partitioned/b=1/c=1/.part-r-00000-829af031-b970-49d6-ad39-30460a0be2c8.orc.crc
spark-3.0.0-bin-hadoop2.7/python/test_support/sql/orc_partitioned/b=0/
spark-3.0.0-bin-hadoop2.7/python/test_support/sql/orc_partitioned/b=0/c=0/
spark-3.0.0-bin-hadoop2.7/python/test_support/sql/orc_partitioned/b=0/c=0/part-r-00000-829af031-b970-49d6-ad39-30460a0be2c8.orc
spark-3.0.0-bin-hadoop2.7/python/test_support/sql/orc_partitioned/b=0/c=0/.part-r-00000-829af031-b970-49d6-ad39-30460a0be2c8.orc.crc
spark-3.0.0-bin-hadoop2.7/python/test_support/sql/orc_partitioned/_SUCCESS
spark-3.0.0-bin-hadoop2.7/python/test_support/sql/ages_newlines.csv
spark-3.0.0-bin-hadoop2.7/python/test_support/sql/streaming/
spark-3.0.0-bin-hadoop2.7/python/test_support/sql/streaming/text-test.txt
spark-3.0.0-bin-hadoop2.7/python/t