Console Output

Started by upstream project "ADAM-prb" build number 3121
originally caused by:
 GitHub pull request #2274 of commit c17a950425e7129d04b8dc607d8b76745d881f0a automatically merged.
[EnvInject] - Loading node environment variables.
Building remotely on research-jenkins-worker-07 (research-07 ubuntu) in workspace /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu
Wiping out workspace first.
Cloning the remote Git repository
Cloning repository https://github.com/bigdatagenomics/adam.git
 > git init /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu # timeout=10
Fetching upstream changes from https://github.com/bigdatagenomics/adam.git
 > git --version # timeout=10
 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/heads/*:refs/remotes/origin/* # timeout=15
 > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10
 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10
 > git config remote.origin.url https://github.com/bigdatagenomics/adam.git # timeout=10
Fetching upstream changes from https://github.com/bigdatagenomics/adam.git
 > git fetch --tags --progress https://github.com/bigdatagenomics/adam.git +refs/pull/*:refs/remotes/origin/pr/* # timeout=15
Checking out Revision a30a822f2f1fae4c474b307d1f73ba8b63ce8f37 (origin/pr/2274/merge)
 > git config core.sparsecheckout # timeout=10
 > git checkout -f a30a822f2f1fae4c474b307d1f73ba8b63ce8f37
First time build. Skipping changelog.
[ubuntu] $ /bin/bash /tmp/hudson7758169297096932171.sh
+ set -e
+ unset SPARK_TESTING
+ export JAVA_HOME=/usr/lib/jvm/java-8-oracle
+ JAVA_HOME=/usr/lib/jvm/java-8-oracle
+ export CONDA_BIN=/home/anaconda/bin/
+ CONDA_BIN=/home/anaconda/bin/
+ export PATH=/usr/lib/jvm/java-8-oracle/bin/:/home/anaconda/bin/:/home/jenkins/tools/hudson.tasks.Maven_MavenInstallation/Maven_3.6.3/bin/:/home/jenkins/gems/bin:/usr/local/go/bin:/home/jenkins/go-projects/bin:/home/jenkins/anaconda2/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games
+ PATH=/usr/lib/jvm/java-8-oracle/bin/:/home/anaconda/bin/:/home/jenkins/tools/hudson.tasks.Maven_MavenInstallation/Maven_3.6.3/bin/:/home/jenkins/gems/bin:/usr/local/go/bin:/home/jenkins/go-projects/bin:/home/jenkins/anaconda2/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games
+ set +x
+ /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/scripts/jenkins-test

# make a tempdir for writing maven cruft to
ADAM_MVN_TMP_DIR=$(mktemp -d -t adamTestMvnXXXXXXX)
mktemp -d -t adamTestMvnXXXXXXX
++ mktemp -d -t adamTestMvnXXXXXXX
+ ADAM_MVN_TMP_DIR=/tmp/adamTestMvnFJdRuV3

# add this tempdir to the poms...
find . -name pom.xml \
    -exec sed -i.bak \
    -e "s:sun.io.serialization.extendedDebugInfo=true:sun.io.serialization.extendedDebugInfo=true -Djava.io.tmpdir=${ADAM_MVN_TMP_DIR}:g" \
    {} \;
+ find . -name pom.xml -exec sed -i.bak -e 's:sun.io.serialization.extendedDebugInfo=true:sun.io.serialization.extendedDebugInfo=true -Djava.io.tmpdir=/tmp/adamTestMvnFJdRuV3:g' '{}' ';'
find . -name "*.bak" -exec rm -f {} \;
+ find . -name '*.bak' -exec rm -f '{}' ';'

# variable declarations
export PATH=${JAVA_HOME}/bin/:${PATH}
+ export PATH=/usr/lib/jvm/java-8-oracle/bin/:/usr/lib/jvm/java-8-oracle/bin/:/home/anaconda/bin/:/home/jenkins/tools/hudson.tasks.Maven_MavenInstallation/Maven_3.6.3/bin/:/home/jenkins/gems/bin:/usr/local/go/bin:/home/jenkins/go-projects/bin:/home/jenkins/anaconda2/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games
+ PATH=/usr/lib/jvm/java-8-oracle/bin/:/usr/lib/jvm/java-8-oracle/bin/:/home/anaconda/bin/:/home/jenkins/tools/hudson.tasks.Maven_MavenInstallation/Maven_3.6.3/bin/:/home/jenkins/gems/bin:/usr/local/go/bin:/home/jenkins/go-projects/bin:/home/jenkins/anaconda2/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games
export MAVEN_OPTS="-Xmx1536m -XX:MaxPermSize=1g -Dfile.encoding=utf-8"
+ export 'MAVEN_OPTS=-Xmx1536m -XX:MaxPermSize=1g -Dfile.encoding=utf-8'
+ MAVEN_OPTS='-Xmx1536m -XX:MaxPermSize=1g -Dfile.encoding=utf-8'
DIR=$( cd $( dirname ${BASH_SOURCE[0]} ) && pwd )
 cd $( dirname ${BASH_SOURCE[0]} ) && pwd 
 dirname ${BASH_SOURCE[0]} 
+++ dirname /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/scripts/jenkins-test
++ cd /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/scripts
++ pwd
+ DIR=/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/scripts
PROJECT_ROOT=${DIR}/..
+ PROJECT_ROOT=/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/scripts/..
VERSION=$(grep "<version>" ${PROJECT_ROOT}/pom.xml  | head -2 | tail -1 | sed 's/ *<version>//g' | sed 's/<\/version>//g')
grep "<version>" ${PROJECT_ROOT}/pom.xml  | head -2 | tail -1 | sed 's/ *<version>//g' | sed 's/<\/version>//g'
++ head -2
++ grep '<version>' /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/scripts/../pom.xml
++ tail -1
++ sed 's/ *<version>//g'
++ sed 's/<\/version>//g'
+ VERSION=0.33.0-SNAPSHOT

# is the hadoop version set?
if ! [[ ${HADOOP_VERSION} ]];
then
    echo "HADOOP_VERSION environment variable is not set."
    echo "Please set this variable before running."
    
    exit 1
fi
+ [[ -n 2.7.5 ]]

# is the spark version set?
if ! [[ ${SPARK_VERSION} ]];
then
    echo "SPARK_VERSION environment variable is not set."
    echo "Please set this variable before running."
    
    exit 1
fi
+ [[ -n 3.0.0 ]]

set -e
+ set -e

# move to Scala 2.11 if requested
if [ ${SCALA_VERSION} == 2.11 ];
then
    set +e
    ./scripts/move_to_scala_2.11.sh
    set -e
fi
+ '[' 2.12 == 2.11 ']'

# move to Scala 2.12 if requested
if [ ${SCALA_VERSION} == 2.12 ];
then
    set +e
    ./scripts/move_to_scala_2.12.sh
    set -e
fi
+ '[' 2.12 == 2.12 ']'
+ set +e
+ ./scripts/move_to_scala_2.12.sh
Scala version is already set to 2.12 (Scala artifacts have _2.12 version suffix in artifact name).
Cowardly refusing to move to Scala 2.12 a second time...
+ set -e

# move to Spark 2.x if requested
if [ ${SPARK_VERSION} == 2.4.6 ];
then
    set +e
    ./scripts/move_to_spark_2.sh
    set -e
fi
+ '[' 3.0.0 == 2.4.6 ']'

# move to Spark 3.x if requested
if [ ${SPARK_VERSION} == 3.0.0 ];
then
    set +e
    ./scripts/move_to_spark_3.sh
    set -e
fi
+ '[' 3.0.0 == 3.0.0 ']'
+ set +e
+ ./scripts/move_to_spark_3.sh
POM is already set up for Spark 3 (Spark 3 artifacts have -spark3 suffix in artifact names).
Cowardly refusing to move to Spark 3 a second time...
+ set -e

# print versions
echo "Testing ADAM version ${VERSION} on Spark ${SPARK_VERSION} and Hadoop ${HADOOP_VERSION}"
+ echo 'Testing ADAM version 0.33.0-SNAPSHOT on Spark 3.0.0 and Hadoop 2.7.5'
Testing ADAM version 0.33.0-SNAPSHOT on Spark 3.0.0 and Hadoop 2.7.5

# first, build the sources, run the unit tests, and generate a coverage report
mvn clean \
    -Dhadoop.version=${HADOOP_VERSION}
+ mvn clean -Dhadoop.version=2.7.5
Java HotSpot(TM) 64-Bit Server VM warning: ignoring option MaxPermSize=1g; support was removed in 8.0
[INFO] Scanning for projects...
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Build Order:
[INFO] 
[INFO] ADAM_2.12                                                          [pom]
[INFO] ADAM_2.12: Shader workaround                                       [jar]
[INFO] ADAM_2.12: Avro-to-Dataset codegen utils                           [jar]
[INFO] ADAM_2.12: Core                                                    [jar]
[INFO] ADAM_2.12: APIs for Java, Python                                   [jar]
[INFO] ADAM_2.12: CLI                                                     [jar]
[INFO] ADAM_2.12: Assembly                                                [jar]
[INFO] 
[INFO] ------------< org.bdgenomics.adam:adam-parent-spark3_2.12 >-------------
[INFO] Building ADAM_2.12 0.33.0-SNAPSHOT                                 [1/7]
[INFO] --------------------------------[ pom ]---------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ adam-parent-spark3_2.12 ---
[INFO] 
[INFO] -------------< org.bdgenomics.adam:adam-shade-spark3_2.12 >-------------
[INFO] Building ADAM_2.12: Shader workaround 0.33.0-SNAPSHOT              [2/7]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ adam-shade-spark3_2.12 ---
[INFO] 
[INFO] ------------< org.bdgenomics.adam:adam-codegen-spark3_2.12 >------------
[INFO] Building ADAM_2.12: Avro-to-Dataset codegen utils 0.33.0-SNAPSHOT  [3/7]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ adam-codegen-spark3_2.12 ---
[INFO] 
[INFO] -------------< org.bdgenomics.adam:adam-core-spark3_2.12 >--------------
[INFO] Building ADAM_2.12: Core 0.33.0-SNAPSHOT                           [4/7]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ adam-core-spark3_2.12 ---
[INFO] 
[INFO] -------------< org.bdgenomics.adam:adam-apis-spark3_2.12 >--------------
[INFO] Building ADAM_2.12: APIs for Java, Python 0.33.0-SNAPSHOT          [5/7]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ adam-apis-spark3_2.12 ---
[INFO] 
[INFO] --------------< org.bdgenomics.adam:adam-cli-spark3_2.12 >--------------
[INFO] Building ADAM_2.12: CLI 0.33.0-SNAPSHOT                            [6/7]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ adam-cli-spark3_2.12 ---
[INFO] 
[INFO] -----------< org.bdgenomics.adam:adam-assembly-spark3_2.12 >------------
[INFO] Building ADAM_2.12: Assembly 0.33.0-SNAPSHOT                       [7/7]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-clean-plugin:3.1.0:clean (default-clean) @ adam-assembly-spark3_2.12 ---
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary for ADAM_2.12 0.33.0-SNAPSHOT:
[INFO] 
[INFO] ADAM_2.12 .......................................... SUCCESS [  0.293 s]
[INFO] ADAM_2.12: Shader workaround ....................... SUCCESS [  0.028 s]
[INFO] ADAM_2.12: Avro-to-Dataset codegen utils ........... SUCCESS [  0.008 s]
[INFO] ADAM_2.12: Core .................................... SUCCESS [  0.014 s]
[INFO] ADAM_2.12: APIs for Java, Python ................... SUCCESS [  0.002 s]
[INFO] ADAM_2.12: CLI ..................................... SUCCESS [  0.048 s]
[INFO] ADAM_2.12: Assembly ................................ SUCCESS [  0.003 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESS
[INFO] ------------------------------------------------------------------------
[INFO] Total time:  0.558 s
[INFO] Finished at: 2020-09-09T11:54:21-07:00
[INFO] ------------------------------------------------------------------------
    
# if this is a pull request, we need to set the coveralls pr id
if [[ ! -z $ghprbPullId ]];
then
    COVERALLS_PRB_OPTION="-DpullRequest=${ghprbPullId}"
fi
+ [[ ! -z 2274 ]]
+ COVERALLS_PRB_OPTION=-DpullRequest=2274

# coveralls token should not be visible
set +x +v
+ set +x +v
Java HotSpot(TM) 64-Bit Server VM warning: ignoring option MaxPermSize=1g; support was removed in 8.0
[INFO] Scanning for projects...
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Build Order:
[INFO] 
[INFO] ADAM_2.12                                                          [pom]
[INFO] ADAM_2.12: Shader workaround                                       [jar]
[INFO] ADAM_2.12: Avro-to-Dataset codegen utils                           [jar]
[INFO] ADAM_2.12: Core                                                    [jar]
[INFO] ADAM_2.12: APIs for Java, Python                                   [jar]
[INFO] ADAM_2.12: CLI                                                     [jar]
[INFO] ADAM_2.12: Assembly                                                [jar]
[INFO] 
[INFO] ------------< org.bdgenomics.adam:adam-parent-spark3_2.12 >-------------
[INFO] Building ADAM_2.12 0.33.0-SNAPSHOT                                 [1/7]
[INFO] --------------------------------[ pom ]---------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-parent-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-parent-spark3_2.12 ---
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-parent-spark3_2.12 ---
[INFO] Modified 0 of 242 .scala files
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-parent-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-parent-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] >>> scoverage-maven-plugin:1.1.1:report (default-cli) > [scoverage]test @ adam-parent-spark3_2.12 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-parent-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-parent-spark3_2.12 ---
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-parent-spark3_2.12 ---
[INFO] Modified 0 of 242 .scala files
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:pre-compile (default-cli) @ adam-parent-spark3_2.12 ---
[INFO] Skipping SCoverage execution for project with packaging type 'pom'
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-parent-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:post-compile (default-cli) @ adam-parent-spark3_2.12 ---
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-parent-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] <<< scoverage-maven-plugin:1.1.1:report (default-cli) < [scoverage]test @ adam-parent-spark3_2.12 <<<
[INFO] 
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:report (default-cli) @ adam-parent-spark3_2.12 ---
[INFO] 
[INFO] -------------< org.bdgenomics.adam:adam-shade-spark3_2.12 >-------------
[INFO] Building ADAM_2.12: Shader workaround 0.33.0-SNAPSHOT              [2/7]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-shade-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-shade-spark3_2.12 ---
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-shade-spark3_2.12 ---
[INFO] Modified 0 of 0 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-shade-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-shade/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-shade-spark3_2.12 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-shade/src/main/java:-1: info: compiling
[INFO] Compiling 1 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-shade/target/2.12.8/classes at 1599677676329
[INFO] prepare-compile in 0 s
[INFO] compile in 2 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-shade-spark3_2.12 ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 1 source file to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-shade/target/2.12.8/classes
[INFO] 
[INFO] --- plexus-component-metadata:1.5.5:generate-metadata (default) @ adam-shade-spark3_2.12 ---
[INFO] Discovered 1 component descriptors(s)
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-shade-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-shade/src/test/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-shade-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-shade-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-shade-spark3_2.12 ---
[INFO] No tests to run.
[INFO] 
[INFO] >>> scoverage-maven-plugin:1.1.1:report (default-cli) > [scoverage]test @ adam-shade-spark3_2.12 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-shade-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-shade-spark3_2.12 ---
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-shade-spark3_2.12 ---
[INFO] Modified 0 of 0 .scala files
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:pre-compile (default-cli) @ adam-shade-spark3_2.12 ---
[WARNING] Skipping SCoverage execution - unsupported Scala version "2.12.8"
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-shade-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-shade/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-shade-spark3_2.12 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-shade/src/main/java:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-shade/target/generated-sources/annotations:-1: info: compiling
[INFO] Compiling 1 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-shade/target/2.12.8/classes at 1599677679525
[INFO] prepare-compile in 0 s
[INFO] compile in 1 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-shade-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- plexus-component-metadata:1.5.5:generate-metadata (default) @ adam-shade-spark3_2.12 ---
[INFO] Discovered 1 component descriptors(s)
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:post-compile (default-cli) @ adam-shade-spark3_2.12 ---
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-shade-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-shade/src/test/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-shade-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-shade-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-shade-spark3_2.12 ---
[INFO] No tests to run.
[INFO] Skipping execution of surefire because it has already been run for this configuration
[INFO] 
[INFO] <<< scoverage-maven-plugin:1.1.1:report (default-cli) < [scoverage]test @ adam-shade-spark3_2.12 <<<
[INFO] 
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:report (default-cli) @ adam-shade-spark3_2.12 ---
[INFO] Skipping SCoverage report generation
[INFO] 
[INFO] ------------< org.bdgenomics.adam:adam-codegen-spark3_2.12 >------------
[INFO] Building ADAM_2.12: Avro-to-Dataset codegen utils 0.33.0-SNAPSHOT  [3/7]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-codegen-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-codegen-spark3_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-codegen-spark3_2.12 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-codegen/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-codegen-spark3_2.12 ---
[INFO] Modified 0 of 4 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-codegen-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-codegen/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-codegen-spark3_2.12 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-codegen/src/main/scala:-1: info: compiling
[INFO] Compiling 4 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-codegen/target/2.12.8/classes at 1599677681656
[WARNING] warning: there were 5 deprecation warnings (since 2.12.0); re-run with -deprecation for details
[WARNING] one warning found
[INFO] prepare-compile in 0 s
[INFO] compile in 4 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-codegen-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-codegen-spark3_2.12 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-codegen/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-codegen-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-codegen/src/test/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-codegen-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-codegen-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-codegen-spark3_2.12 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-codegen-spark3_2.12 ---
Discovery starting.
Discovery completed in 83 milliseconds.
Run starting. Expected test count is: 0
DiscoverySuite:
Run completed in 127 milliseconds.
Total number of tests run: 0
Suites: completed 1, aborted 0
Tests: succeeded 0, failed 0, canceled 0, ignored 0, pending 0
No tests were executed.
[INFO] 
[INFO] >>> scoverage-maven-plugin:1.1.1:report (default-cli) > [scoverage]test @ adam-codegen-spark3_2.12 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-codegen-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-codegen-spark3_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-codegen-spark3_2.12 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-codegen/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-codegen-spark3_2.12 ---
[INFO] Modified 0 of 4 .scala files
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:pre-compile (default-cli) @ adam-codegen-spark3_2.12 ---
[WARNING] Skipping SCoverage execution - unsupported Scala version "2.12.8"
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-codegen-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-codegen/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-codegen-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-codegen-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:post-compile (default-cli) @ adam-codegen-spark3_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-codegen-spark3_2.12 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-codegen/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-codegen-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-codegen/src/test/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-codegen-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-codegen-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-codegen-spark3_2.12 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-codegen-spark3_2.12 ---
Discovery starting.
Discovery completed in 79 milliseconds.
Run starting. Expected test count is: 0
DiscoverySuite:
Run completed in 122 milliseconds.
Total number of tests run: 0
Suites: completed 1, aborted 0
Tests: succeeded 0, failed 0, canceled 0, ignored 0, pending 0
No tests were executed.
[INFO] 
[INFO] <<< scoverage-maven-plugin:1.1.1:report (default-cli) < [scoverage]test @ adam-codegen-spark3_2.12 <<<
[INFO] 
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:report (default-cli) @ adam-codegen-spark3_2.12 ---
[INFO] Skipping SCoverage report generation
[INFO] 
[INFO] -------------< org.bdgenomics.adam:adam-core-spark3_2.12 >--------------
[INFO] Building ADAM_2.12: Core 0.33.0-SNAPSHOT                           [4/7]
[INFO] --------------------------------[ jar ]---------------------------------
Downloading from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-core_2.12/3.0.1/spark-core_2.12-3.0.1.pom
Progress (1): 2.7/31 kB
Progress (1): 5.5/31 kB
Progress (1): 8.2/31 kB
Progress (1): 11/31 kB 
Progress (1): 14/31 kB
Progress (1): 16/31 kB
Progress (1): 19/31 kB
Progress (1): 22/31 kB
Progress (1): 25/31 kB
Progress (1): 27/31 kB
Progress (1): 30/31 kB
Progress (1): 31 kB   
                   
Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-core_2.12/3.0.1/spark-core_2.12-3.0.1.pom (31 kB at 108 kB/s)
Downloading from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-parent_2.12/3.0.1/spark-parent_2.12-3.0.1.pom
Progress (1): 2.7/119 kB
Progress (1): 5.5/119 kB
Progress (1): 8.2/119 kB
Progress (1): 11/119 kB 
Progress (1): 14/119 kB
Progress (1): 16/119 kB
Progress (1): 19/119 kB
Progress (1): 22/119 kB
Progress (1): 25/119 kB
Progress (1): 27/119 kB
Progress (1): 30/119 kB
Progress (1): 33/119 kB
Progress (1): 36/119 kB
Progress (1): 38/119 kB
Progress (1): 41/119 kB
Progress (1): 44/119 kB
Progress (1): 47/119 kB
Progress (1): 49/119 kB
Progress (1): 52/119 kB
Progress (1): 55/119 kB
Progress (1): 58/119 kB
Progress (1): 60/119 kB
Progress (1): 63/119 kB
Progress (1): 66/119 kB
Progress (1): 69/119 kB
Progress (1): 71/119 kB
Progress (1): 74/119 kB
Progress (1): 77/119 kB
Progress (1): 80/119 kB
Progress (1): 82/119 kB
Progress (1): 85/119 kB
Progress (1): 88/119 kB
Progress (1): 90/119 kB
Progress (1): 93/119 kB
Progress (1): 96/119 kB
Progress (1): 99/119 kB
Progress (1): 101/119 kB
Progress (1): 104/119 kB
Progress (1): 107/119 kB
Progress (1): 110/119 kB
Progress (1): 112/119 kB
Progress (1): 115/119 kB
Progress (1): 118/119 kB
Progress (1): 119 kB    
                    
Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-parent_2.12/3.0.1/spark-parent_2.12-3.0.1.pom (119 kB at 1.1 MB/s)
Downloading from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-launcher_2.12/3.0.1/spark-launcher_2.12-3.0.1.pom
Progress (1): 2.7/7.5 kB
Progress (1): 5.5/7.5 kB
Progress (1): 7.5 kB    
                    
Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-launcher_2.12/3.0.1/spark-launcher_2.12-3.0.1.pom (7.5 kB at 98 kB/s)
Downloading from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-tags_2.12/3.0.1/spark-tags_2.12-3.0.1.pom
Progress (1): 2.5 kB
                    
Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-tags_2.12/3.0.1/spark-tags_2.12-3.0.1.pom (2.5 kB at 33 kB/s)
Downloading from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-kvstore_2.12/3.0.1/spark-kvstore_2.12-3.0.1.pom
Progress (1): 2.7/4.6 kB
Progress (1): 4.6 kB    
                    
Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-kvstore_2.12/3.0.1/spark-kvstore_2.12-3.0.1.pom (4.6 kB at 55 kB/s)
Downloading from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-network-common_2.12/3.0.1/spark-network-common_2.12-3.0.1.pom
Progress (1): 2.7/6.1 kB
Progress (1): 5.5/6.1 kB
Progress (1): 6.1 kB    
                    
Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-network-common_2.12/3.0.1/spark-network-common_2.12-3.0.1.pom (6.1 kB at 75 kB/s)
Downloading from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-network-shuffle_2.12/3.0.1/spark-network-shuffle_2.12-3.0.1.pom
Progress (1): 2.7/4.5 kB
Progress (1): 4.5 kB    
                    
Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-network-shuffle_2.12/3.0.1/spark-network-shuffle_2.12-3.0.1.pom (4.5 kB at 57 kB/s)
Downloading from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-unsafe_2.12/3.0.1/spark-unsafe_2.12-3.0.1.pom
Progress (1): 2.7/5.0 kB
Progress (1): 5.0 kB    
                    
Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-unsafe_2.12/3.0.1/spark-unsafe_2.12-3.0.1.pom (5.0 kB at 67 kB/s)
Downloading from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-sql_2.12/3.0.1/spark-sql_2.12-3.0.1.pom
Progress (1): 2.7/16 kB
Progress (1): 5.5/16 kB
Progress (1): 8.2/16 kB
Progress (1): 11/16 kB 
Progress (1): 14/16 kB
Progress (1): 16 kB   
                   
Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-sql_2.12/3.0.1/spark-sql_2.12-3.0.1.pom (16 kB at 197 kB/s)
Downloading from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-sketch_2.12/3.0.1/spark-sketch_2.12-3.0.1.pom
Progress (1): 3.0 kB
                    
Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-sketch_2.12/3.0.1/spark-sketch_2.12-3.0.1.pom (3.0 kB at 35 kB/s)
Downloading from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-catalyst_2.12/3.0.1/spark-catalyst_2.12-3.0.1.pom
Progress (1): 4.1/11 kB
Progress (1): 8.2/11 kB
Progress (1): 11 kB    
                   
Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-catalyst_2.12/3.0.1/spark-catalyst_2.12-3.0.1.pom (11 kB at 136 kB/s)
Downloading from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-core_2.12/3.0.1/spark-core_2.12-3.0.1.jar
Downloading from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-launcher_2.12/3.0.1/spark-launcher_2.12-3.0.1.jar
Downloading from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-kvstore_2.12/3.0.1/spark-kvstore_2.12-3.0.1.jar
Downloading from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-network-common_2.12/3.0.1/spark-network-common_2.12-3.0.1.jar
Downloading from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-network-shuffle_2.12/3.0.1/spark-network-shuffle_2.12-3.0.1.jar
Progress (1): 4.1/76 kB
Progress (1): 8.2/76 kB
Progress (1): 12/76 kB 
Progress (1): 16/76 kB
Progress (1): 20/76 kB
Progress (1): 25/76 kB
Progress (1): 29/76 kB
Progress (1): 33/76 kB
Progress (1): 37/76 kB
Progress (1): 41/76 kB
Progress (1): 45/76 kB
Progress (1): 49/76 kB
Progress (1): 53/76 kB
Progress (1): 57/76 kB
Progress (1): 61/76 kB
Progress (1): 66/76 kB
Progress (1): 70/76 kB
Progress (1): 74/76 kB
Progress (1): 76 kB   
Progress (2): 76 kB | 2.7/60 kB
Progress (2): 76 kB | 5.5/60 kB
Progress (2): 76 kB | 8.2/60 kB
Progress (2): 76 kB | 11/60 kB 
Progress (2): 76 kB | 14/60 kB
Progress (3): 76 kB | 14/60 kB | 2.7/87 kB
Progress (3): 76 kB | 16/60 kB | 2.7/87 kB
Progress (3): 76 kB | 19/60 kB | 2.7/87 kB
Progress (3): 76 kB | 19/60 kB | 5.5/87 kB
Progress (3): 76 kB | 22/60 kB | 5.5/87 kB
Progress (3): 76 kB | 22/60 kB | 8.2/87 kB
Progress (3): 76 kB | 25/60 kB | 8.2/87 kB
Progress (3): 76 kB | 25/60 kB | 11/87 kB 
Progress (3): 76 kB | 27/60 kB | 11/87 kB
Progress (3): 76 kB | 27/60 kB | 14/87 kB
Progress (3): 76 kB | 30/60 kB | 14/87 kB
Progress (3): 76 kB | 30/60 kB | 16/87 kB
Progress (3): 76 kB | 33/60 kB | 16/87 kB
Progress (4): 76 kB | 33/60 kB | 16/87 kB | 0/9.7 MB
Progress (4): 76 kB | 36/60 kB | 16/87 kB | 0/9.7 MB
Progress (4): 76 kB | 36/60 kB | 19/87 kB | 0/9.7 MB
Progress (4): 76 kB | 38/60 kB | 19/87 kB | 0/9.7 MB
Progress (4): 76 kB | 38/60 kB | 22/87 kB | 0/9.7 MB
Progress (4): 76 kB | 41/60 kB | 22/87 kB | 0/9.7 MB
Progress (4): 76 kB | 41/60 kB | 25/87 kB | 0/9.7 MB
Progress (4): 76 kB | 44/60 kB | 25/87 kB | 0/9.7 MB
Progress (4): 76 kB | 44/60 kB | 27/87 kB | 0/9.7 MB
Progress (4): 76 kB | 47/60 kB | 27/87 kB | 0/9.7 MB
Progress (4): 76 kB | 47/60 kB | 30/87 kB | 0/9.7 MB
Progress (4): 76 kB | 49/60 kB | 30/87 kB | 0/9.7 MB
Progress (4): 76 kB | 49/60 kB | 33/87 kB | 0/9.7 MB
Progress (4): 76 kB | 52/60 kB | 33/87 kB | 0/9.7 MB
Progress (4): 76 kB | 52/60 kB | 36/87 kB | 0/9.7 MB
Progress (4): 76 kB | 55/60 kB | 36/87 kB | 0/9.7 MB
Progress (4): 76 kB | 55/60 kB | 38/87 kB | 0/9.7 MB
Progress (4): 76 kB | 58/60 kB | 38/87 kB | 0/9.7 MB
Progress (4): 76 kB | 58/60 kB | 38/87 kB | 0.1/9.7 MB
Progress (4): 76 kB | 60 kB | 38/87 kB | 0.1/9.7 MB   
Progress (4): 76 kB | 60 kB | 41/87 kB | 0.1/9.7 MB
Progress (4): 76 kB | 60 kB | 44/87 kB | 0.1/9.7 MB
Progress (4): 76 kB | 60 kB | 47/87 kB | 0.1/9.7 MB
Progress (4): 76 kB | 60 kB | 49/87 kB | 0.1/9.7 MB
Progress (4): 76 kB | 60 kB | 52/87 kB | 0.1/9.7 MB
Progress (4): 76 kB | 60 kB | 55/87 kB | 0.1/9.7 MB
Progress (4): 76 kB | 60 kB | 58/87 kB | 0.1/9.7 MB
Progress (4): 76 kB | 60 kB | 58/87 kB | 0.1/9.7 MB
Progress (4): 76 kB | 60 kB | 60/87 kB | 0.1/9.7 MB
Progress (4): 76 kB | 60 kB | 63/87 kB | 0.1/9.7 MB
Progress (4): 76 kB | 60 kB | 66/87 kB | 0.1/9.7 MB
Progress (4): 76 kB | 60 kB | 69/87 kB | 0.1/9.7 MB
Progress (4): 76 kB | 60 kB | 71/87 kB | 0.1/9.7 MB
Progress (4): 76 kB | 60 kB | 74/87 kB | 0.1/9.7 MB
Progress (4): 76 kB | 60 kB | 77/87 kB | 0.1/9.7 MB
Progress (4): 76 kB | 60 kB | 80/87 kB | 0.1/9.7 MB
Progress (4): 76 kB | 60 kB | 82/87 kB | 0.1/9.7 MB
Progress (4): 76 kB | 60 kB | 85/87 kB | 0.1/9.7 MB
Progress (4): 76 kB | 60 kB | 85/87 kB | 0.2/9.7 MB
Progress (4): 76 kB | 60 kB | 87 kB | 0.2/9.7 MB   
Progress (4): 76 kB | 60 kB | 87 kB | 0.2/9.7 MB
Progress (4): 76 kB | 60 kB | 87 kB | 0.3/9.7 MB
Progress (4): 76 kB | 60 kB | 87 kB | 0.3/9.7 MB
Progress (4): 76 kB | 60 kB | 87 kB | 0.4/9.7 MB
Progress (4): 76 kB | 60 kB | 87 kB | 0.4/9.7 MB
Progress (4): 76 kB | 60 kB | 87 kB | 0.5/9.7 MB
Progress (4): 76 kB | 60 kB | 87 kB | 0.5/9.7 MB
Progress (4): 76 kB | 60 kB | 87 kB | 0.6/9.7 MB
Progress (4): 76 kB | 60 kB | 87 kB | 0.6/9.7 MB
Progress (4): 76 kB | 60 kB | 87 kB | 0.7/9.7 MB
Progress (4): 76 kB | 60 kB | 87 kB | 0.7/9.7 MB
Progress (4): 76 kB | 60 kB | 87 kB | 0.8/9.7 MB
Progress (4): 76 kB | 60 kB | 87 kB | 0.8/9.7 MB
Progress (4): 76 kB | 60 kB | 87 kB | 0.9/9.7 MB
                                                
Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-launcher_2.12/3.0.1/spark-launcher_2.12-3.0.1.jar (76 kB at 799 kB/s)
Progress (3): 60 kB | 87 kB | 0.9/9.7 MB
                                        
Downloading from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-unsafe_2.12/3.0.1/spark-unsafe_2.12-3.0.1.jar
Progress (3): 60 kB | 87 kB | 1.0/9.7 MB
Progress (3): 60 kB | 87 kB | 1.0/9.7 MB
Progress (3): 60 kB | 87 kB | 1.1/9.7 MB
Progress (4): 60 kB | 87 kB | 1.1/9.7 MB | 4.1/51 kB
Progress (4): 60 kB | 87 kB | 1.1/9.7 MB | 8.2/51 kB
Progress (4): 60 kB | 87 kB | 1.1/9.7 MB | 12/51 kB 
Progress (4): 60 kB | 87 kB | 1.1/9.7 MB | 12/51 kB
Progress (4): 60 kB | 87 kB | 1.1/9.7 MB | 16/51 kB
Progress (4): 60 kB | 87 kB | 1.1/9.7 MB | 20/51 kB
Progress (4): 60 kB | 87 kB | 1.1/9.7 MB | 25/51 kB
Progress (4): 60 kB | 87 kB | 1.1/9.7 MB | 29/51 kB
Progress (4): 60 kB | 87 kB | 1.2/9.7 MB | 29/51 kB
Progress (4): 60 kB | 87 kB | 1.2/9.7 MB | 33/51 kB
Progress (4): 60 kB | 87 kB | 1.2/9.7 MB | 37/51 kB
Progress (4): 60 kB | 87 kB | 1.2/9.7 MB | 41/51 kB
Progress (4): 60 kB | 87 kB | 1.2/9.7 MB | 45/51 kB
Progress (4): 60 kB | 87 kB | 1.2/9.7 MB | 49/51 kB
Progress (4): 60 kB | 87 kB | 1.2/9.7 MB | 51 kB   
Progress (4): 60 kB | 87 kB | 1.2/9.7 MB | 51 kB
Progress (4): 60 kB | 87 kB | 1.3/9.7 MB | 51 kB
Progress (4): 60 kB | 87 kB | 1.3/9.7 MB | 51 kB
Progress (4): 60 kB | 87 kB | 1.4/9.7 MB | 51 kB
Progress (4): 60 kB | 87 kB | 1.4/9.7 MB | 51 kB
                                                
Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-kvstore_2.12/3.0.1/spark-kvstore_2.12-3.0.1.jar (60 kB at 521 kB/s)
Downloading from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-tags_2.12/3.0.1/spark-tags_2.12-3.0.1.jar
Progress (3): 87 kB | 1.5/9.7 MB | 51 kB
Progress (3): 87 kB | 1.5/9.7 MB | 51 kB
Progress (3): 87 kB | 1.6/9.7 MB | 51 kB
Progress (3): 87 kB | 1.6/9.7 MB | 51 kB
Progress (4): 87 kB | 1.6/9.7 MB | 51 kB | 2.7/15 kB
                                                    
Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-network-shuffle_2.12/3.0.1/spark-network-shuffle_2.12-3.0.1.jar (87 kB at 713 kB/s)
Progress (3): 1.6/9.7 MB | 51 kB | 5.5/15 kB
                                            
Downloading from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-sql_2.12/3.0.1/spark-sql_2.12-3.0.1.jar
Progress (3): 1.6/9.7 MB | 51 kB | 8.2/15 kB
Progress (3): 1.7/9.7 MB | 51 kB | 8.2/15 kB
Progress (3): 1.7/9.7 MB | 51 kB | 11/15 kB 
Progress (3): 1.7/9.7 MB | 51 kB | 14/15 kB
Progress (3): 1.7/9.7 MB | 51 kB | 15 kB   
Progress (3): 1.7/9.7 MB | 51 kB | 15 kB
Progress (3): 1.8/9.7 MB | 51 kB | 15 kB
Progress (3): 1.8/9.7 MB | 51 kB | 15 kB
Progress (3): 1.9/9.7 MB | 51 kB | 15 kB
Progress (3): 1.9/9.7 MB | 51 kB | 15 kB
Progress (3): 2.0/9.7 MB | 51 kB | 15 kB
Progress (3): 2.0/9.7 MB | 51 kB | 15 kB
Progress (3): 2.1/9.7 MB | 51 kB | 15 kB
Progress (3): 2.1/9.7 MB | 51 kB | 15 kB
Progress (3): 2.2/9.7 MB | 51 kB | 15 kB
Progress (3): 2.2/9.7 MB | 51 kB | 15 kB
Progress (3): 2.3/9.7 MB | 51 kB | 15 kB
Progress (3): 2.3/9.7 MB | 51 kB | 15 kB
Progress (3): 2.4/9.7 MB | 51 kB | 15 kB
Progress (3): 2.4/9.7 MB | 51 kB | 15 kB
Progress (3): 2.5/9.7 MB | 51 kB | 15 kB
Progress (3): 2.5/9.7 MB | 51 kB | 15 kB
Progress (3): 2.5/9.7 MB | 51 kB | 15 kB
Progress (3): 2.6/9.7 MB | 51 kB | 15 kB
Progress (3): 2.6/9.7 MB | 51 kB | 15 kB
Progress (3): 2.7/9.7 MB | 51 kB | 15 kB
Progress (3): 2.7/9.7 MB | 51 kB | 15 kB
Progress (3): 2.8/9.7 MB | 51 kB | 15 kB
Progress (3): 2.8/9.7 MB | 51 kB | 15 kB
Progress (3): 2.9/9.7 MB | 51 kB | 15 kB
Progress (3): 2.9/9.7 MB | 51 kB | 15 kB
Progress (3): 3.0/9.7 MB | 51 kB | 15 kB
Progress (3): 3.0/9.7 MB | 51 kB | 15 kB
Progress (3): 3.1/9.7 MB | 51 kB | 15 kB
                                        
Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-unsafe_2.12/3.0.1/spark-unsafe_2.12-3.0.1.jar (51 kB at 285 kB/s)
Downloading from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-sketch_2.12/3.0.1/spark-sketch_2.12-3.0.1.jar
Progress (3): 3.1/9.7 MB | 15 kB | 0/2.4 MB
Progress (3): 3.1/9.7 MB | 15 kB | 0/2.4 MB
Progress (3): 3.1/9.7 MB | 15 kB | 0/2.4 MB
Progress (3): 3.2/9.7 MB | 15 kB | 0/2.4 MB
Progress (3): 3.2/9.7 MB | 15 kB | 0/2.4 MB
Progress (3): 3.2/9.7 MB | 15 kB | 0/2.4 MB
Progress (3): 3.2/9.7 MB | 15 kB | 0/2.4 MB
Progress (3): 3.2/9.7 MB | 15 kB | 0.1/2.4 MB
Progress (3): 3.3/9.7 MB | 15 kB | 0.1/2.4 MB
Progress (3): 3.3/9.7 MB | 15 kB | 0.1/2.4 MB
Progress (4): 3.3/9.7 MB | 15 kB | 0.1/2.4 MB | 4.1/30 kB
Progress (4): 3.3/9.7 MB | 15 kB | 0.1/2.4 MB | 8.2/30 kB
Progress (4): 3.3/9.7 MB | 15 kB | 0.1/2.4 MB | 12/30 kB 
Progress (4): 3.3/9.7 MB | 15 kB | 0.1/2.4 MB | 16/30 kB
Progress (4): 3.3/9.7 MB | 15 kB | 0.1/2.4 MB | 16/30 kB
Progress (4): 3.3/9.7 MB | 15 kB | 0.1/2.4 MB | 16/30 kB
Progress (4): 3.3/9.7 MB | 15 kB | 0.1/2.4 MB | 20/30 kB
Progress (4): 3.3/9.7 MB | 15 kB | 0.1/2.4 MB | 25/30 kB
Progress (4): 3.3/9.7 MB | 15 kB | 0.1/2.4 MB | 29/30 kB
Progress (4): 3.3/9.7 MB | 15 kB | 0.1/2.4 MB | 30 kB   
Progress (4): 3.3/9.7 MB | 15 kB | 0.1/2.4 MB | 30 kB
Progress (4): 3.4/9.7 MB | 15 kB | 0.1/2.4 MB | 30 kB
Progress (4): 3.4/9.7 MB | 15 kB | 0.1/2.4 MB | 30 kB
Progress (4): 3.4/9.7 MB | 15 kB | 0.1/2.4 MB | 30 kB
Progress (4): 3.4/9.7 MB | 15 kB | 0.1/2.4 MB | 30 kB
Progress (4): 3.4/9.7 MB | 15 kB | 0.1/2.4 MB | 30 kB
Progress (4): 3.5/9.7 MB | 15 kB | 0.1/2.4 MB | 30 kB
Progress (4): 3.5/9.7 MB | 15 kB | 0.1/2.4 MB | 30 kB
                                                     
Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-tags_2.12/3.0.1/spark-tags_2.12-3.0.1.jar (15 kB at 77 kB/s)
Downloading from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-catalyst_2.12/3.0.1/spark-catalyst_2.12-3.0.1.jar
Progress (3): 3.5/9.7 MB | 0.1/2.4 MB | 30 kB
Progress (3): 3.5/9.7 MB | 0.1/2.4 MB | 30 kB
Progress (3): 3.5/9.7 MB | 0.2/2.4 MB | 30 kB
Progress (3): 3.5/9.7 MB | 0.2/2.4 MB | 30 kB
Progress (3): 3.6/9.7 MB | 0.2/2.4 MB | 30 kB
Progress (3): 3.6/9.7 MB | 0.2/2.4 MB | 30 kB
Progress (3): 3.6/9.7 MB | 0.2/2.4 MB | 30 kB
Progress (3): 3.6/9.7 MB | 0.2/2.4 MB | 30 kB
Progress (3): 3.6/9.7 MB | 0.2/2.4 MB | 30 kB
Progress (3): 3.7/9.7 MB | 0.2/2.4 MB | 30 kB
Progress (3): 3.7/9.7 MB | 0.2/2.4 MB | 30 kB
Progress (3): 3.7/9.7 MB | 0.2/2.4 MB | 30 kB
Progress (3): 3.7/9.7 MB | 0.2/2.4 MB | 30 kB
Progress (3): 3.7/9.7 MB | 0.2/2.4 MB | 30 kB
Progress (3): 3.8/9.7 MB | 0.2/2.4 MB | 30 kB
Progress (3): 3.8/9.7 MB | 0.3/2.4 MB | 30 kB
Progress (3): 3.8/9.7 MB | 0.3/2.4 MB | 30 kB
Progress (3): 3.8/9.7 MB | 0.3/2.4 MB | 30 kB
Progress (3): 3.8/9.7 MB | 0.3/2.4 MB | 30 kB
Progress (3): 3.9/9.7 MB | 0.3/2.4 MB | 30 kB
Progress (3): 3.9/9.7 MB | 0.3/2.4 MB | 30 kB
Progress (3): 3.9/9.7 MB | 0.3/2.4 MB | 30 kB
Progress (3): 3.9/9.7 MB | 0.3/2.4 MB | 30 kB
Progress (3): 3.9/9.7 MB | 0.3/2.4 MB | 30 kB
Progress (3): 4.0/9.7 MB | 0.3/2.4 MB | 30 kB
Progress (3): 4.0/9.7 MB | 0.3/2.4 MB | 30 kB
Progress (3): 4.0/9.7 MB | 0.4/2.4 MB | 30 kB
Progress (3): 4.0/9.7 MB | 0.4/2.4 MB | 30 kB
Progress (3): 4.0/9.7 MB | 0.4/2.4 MB | 30 kB
Progress (3): 4.1/9.7 MB | 0.4/2.4 MB | 30 kB
Progress (3): 4.1/9.7 MB | 0.4/2.4 MB | 30 kB
Progress (3): 4.1/9.7 MB | 0.4/2.4 MB | 30 kB
Progress (3): 4.1/9.7 MB | 0.4/2.4 MB | 30 kB
Progress (3): 4.1/9.7 MB | 0.4/2.4 MB | 30 kB
Progress (3): 4.2/9.7 MB | 0.4/2.4 MB | 30 kB
Progress (3): 4.2/9.7 MB | 0.4/2.4 MB | 30 kB
Progress (3): 4.2/9.7 MB | 0.5/2.4 MB | 30 kB
Progress (3): 4.2/9.7 MB | 0.5/2.4 MB | 30 kB
Progress (3): 4.2/9.7 MB | 0.5/2.4 MB | 30 kB
Progress (3): 4.3/9.7 MB | 0.5/2.4 MB | 30 kB
Progress (3): 4.3/9.7 MB | 0.5/2.4 MB | 30 kB
Progress (3): 4.3/9.7 MB | 0.5/2.4 MB | 30 kB
Progress (3): 4.3/9.7 MB | 0.5/2.4 MB | 30 kB
Progress (3): 4.3/9.7 MB | 0.5/2.4 MB | 30 kB
Progress (3): 4.4/9.7 MB | 0.5/2.4 MB | 30 kB
Progress (3): 4.4/9.7 MB | 0.5/2.4 MB | 30 kB
Progress (3): 4.4/9.7 MB | 0.6/2.4 MB | 30 kB
Progress (3): 4.4/9.7 MB | 0.6/2.4 MB | 30 kB
Progress (3): 4.4/9.7 MB | 0.6/2.4 MB | 30 kB
Progress (3): 4.4/9.7 MB | 0.6/2.4 MB | 30 kB
Progress (3): 4.5/9.7 MB | 0.6/2.4 MB | 30 kB
Progress (3): 4.5/9.7 MB | 0.6/2.4 MB | 30 kB
Progress (3): 4.5/9.7 MB | 0.6/2.4 MB | 30 kB
Progress (3): 4.5/9.7 MB | 0.6/2.4 MB | 30 kB
Progress (3): 4.5/9.7 MB | 0.6/2.4 MB | 30 kB
Progress (3): 4.6/9.7 MB | 0.6/2.4 MB | 30 kB
Progress (3): 4.6/9.7 MB | 0.7/2.4 MB | 30 kB
Progress (3): 4.6/9.7 MB | 0.7/2.4 MB | 30 kB
Progress (3): 4.6/9.7 MB | 0.7/2.4 MB | 30 kB
Progress (3): 4.6/9.7 MB | 0.7/2.4 MB | 30 kB
Progress (3): 4.7/9.7 MB | 0.7/2.4 MB | 30 kB
Progress (3): 4.7/9.7 MB | 0.7/2.4 MB | 30 kB
Progress (3): 4.7/9.7 MB | 0.7/2.4 MB | 30 kB
Progress (3): 4.7/9.7 MB | 0.7/2.4 MB | 30 kB
Progress (3): 4.7/9.7 MB | 0.7/2.4 MB | 30 kB
Progress (3): 4.7/9.7 MB | 0.8/2.4 MB | 30 kB
Progress (3): 4.8/9.7 MB | 0.8/2.4 MB | 30 kB
Progress (3): 4.8/9.7 MB | 0.8/2.4 MB | 30 kB
Progress (3): 4.8/9.7 MB | 0.8/2.4 MB | 30 kB
Progress (3): 4.8/9.7 MB | 0.8/2.4 MB | 30 kB
Progress (3): 4.8/9.7 MB | 0.8/2.4 MB | 30 kB
Progress (3): 4.8/9.7 MB | 0.8/2.4 MB | 30 kB
Progress (3): 4.9/9.7 MB | 0.8/2.4 MB | 30 kB
Progress (3): 4.9/9.7 MB | 0.8/2.4 MB | 30 kB
Progress (3): 4.9/9.7 MB | 0.9/2.4 MB | 30 kB
Progress (3): 4.9/9.7 MB | 0.9/2.4 MB | 30 kB
Progress (3): 4.9/9.7 MB | 0.9/2.4 MB | 30 kB
Progress (3): 4.9/9.7 MB | 0.9/2.4 MB | 30 kB
Progress (3): 4.9/9.7 MB | 0.9/2.4 MB | 30 kB
Progress (3): 5.0/9.7 MB | 0.9/2.4 MB | 30 kB
Progress (3): 5.0/9.7 MB | 0.9/2.4 MB | 30 kB
Progress (3): 5.0/9.7 MB | 0.9/2.4 MB | 30 kB
Progress (3): 5.0/9.7 MB | 0.9/2.4 MB | 30 kB
Progress (3): 5.0/9.7 MB | 1.0/2.4 MB | 30 kB
Progress (3): 5.0/9.7 MB | 1.0/2.4 MB | 30 kB
Progress (3): 5.0/9.7 MB | 1.0/2.4 MB | 30 kB
Progress (3): 5.1/9.7 MB | 1.0/2.4 MB | 30 kB
Progress (3): 5.1/9.7 MB | 1.0/2.4 MB | 30 kB
Progress (3): 5.1/9.7 MB | 1.0/2.4 MB | 30 kB
Progress (3): 5.1/9.7 MB | 1.0/2.4 MB | 30 kB
Progress (3): 5.1/9.7 MB | 1.0/2.4 MB | 30 kB
Progress (3): 5.1/9.7 MB | 1.0/2.4 MB | 30 kB
Progress (3): 5.1/9.7 MB | 1.1/2.4 MB | 30 kB
Progress (3): 5.2/9.7 MB | 1.1/2.4 MB | 30 kB
Progress (3): 5.2/9.7 MB | 1.1/2.4 MB | 30 kB
Progress (3): 5.2/9.7 MB | 1.1/2.4 MB | 30 kB
Progress (3): 5.2/9.7 MB | 1.1/2.4 MB | 30 kB
Progress (3): 5.2/9.7 MB | 1.1/2.4 MB | 30 kB
Progress (3): 5.2/9.7 MB | 1.1/2.4 MB | 30 kB
Progress (3): 5.2/9.7 MB | 1.1/2.4 MB | 30 kB
Progress (3): 5.2/9.7 MB | 1.2/2.4 MB | 30 kB
Progress (3): 5.3/9.7 MB | 1.2/2.4 MB | 30 kB
                                             
Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-sketch_2.12/3.0.1/spark-sketch_2.12-3.0.1.jar (30 kB at 114 kB/s)
Progress (2): 5.3/9.7 MB | 1.2/2.4 MB
Progress (2): 5.3/9.7 MB | 1.2/2.4 MB
Progress (2): 5.3/9.7 MB | 1.2/2.4 MB
Progress (2): 5.3/9.7 MB | 1.2/2.4 MB
Progress (2): 5.3/9.7 MB | 1.2/2.4 MB
Progress (2): 5.3/9.7 MB | 1.2/2.4 MB
Progress (3): 5.3/9.7 MB | 1.2/2.4 MB | 0/7.1 MB
Progress (3): 5.4/9.7 MB | 1.2/2.4 MB | 0/7.1 MB
Progress (3): 5.4/9.7 MB | 1.3/2.4 MB | 0/7.1 MB
Progress (3): 5.4/9.7 MB | 1.3/2.4 MB | 0/7.1 MB
Progress (3): 5.4/9.7 MB | 1.3/2.4 MB | 0/7.1 MB
Progress (3): 5.4/9.7 MB | 1.3/2.4 MB | 0/7.1 MB
Progress (3): 5.4/9.7 MB | 1.3/2.4 MB | 0/7.1 MB
Progress (3): 5.4/9.7 MB | 1.3/2.4 MB | 0.1/7.1 MB
Progress (3): 5.4/9.7 MB | 1.3/2.4 MB | 0.1/7.1 MB
Progress (3): 5.4/9.7 MB | 1.3/2.4 MB | 0.1/7.1 MB
Progress (3): 5.4/9.7 MB | 1.3/2.4 MB | 0.1/7.1 MB
Progress (3): 5.4/9.7 MB | 1.4/2.4 MB | 0.1/7.1 MB
Progress (3): 5.4/9.7 MB | 1.4/2.4 MB | 0.1/7.1 MB
Progress (3): 5.4/9.7 MB | 1.4/2.4 MB | 0.1/7.1 MB
Progress (3): 5.5/9.7 MB | 1.4/2.4 MB | 0.1/7.1 MB
Progress (3): 5.5/9.7 MB | 1.4/2.4 MB | 0.1/7.1 MB
Progress (3): 5.5/9.7 MB | 1.4/2.4 MB | 0.1/7.1 MB
Progress (3): 5.5/9.7 MB | 1.4/2.4 MB | 0.1/7.1 MB
Progress (3): 5.5/9.7 MB | 1.4/2.4 MB | 0.1/7.1 MB
Progress (3): 5.5/9.7 MB | 1.4/2.4 MB | 0.1/7.1 MB
Progress (3): 5.5/9.7 MB | 1.4/2.4 MB | 0.1/7.1 MB
Progress (3): 5.5/9.7 MB | 1.5/2.4 MB | 0.1/7.1 MB
Progress (3): 5.6/9.7 MB | 1.5/2.4 MB | 0.1/7.1 MB
Progress (3): 5.6/9.7 MB | 1.5/2.4 MB | 0.1/7.1 MB
Progress (3): 5.6/9.7 MB | 1.5/2.4 MB | 0.2/7.1 MB
Progress (3): 5.6/9.7 MB | 1.5/2.4 MB | 0.2/7.1 MB
Progress (3): 5.6/9.7 MB | 1.5/2.4 MB | 0.2/7.1 MB
Progress (3): 5.6/9.7 MB | 1.5/2.4 MB | 0.2/7.1 MB
Progress (3): 5.6/9.7 MB | 1.5/2.4 MB | 0.2/7.1 MB
Progress (3): 5.6/9.7 MB | 1.5/2.4 MB | 0.2/7.1 MB
Progress (3): 5.7/9.7 MB | 1.5/2.4 MB | 0.2/7.1 MB
Progress (3): 5.7/9.7 MB | 1.5/2.4 MB | 0.2/7.1 MB
Progress (3): 5.7/9.7 MB | 1.6/2.4 MB | 0.2/7.1 MB
Progress (3): 5.7/9.7 MB | 1.6/2.4 MB | 0.2/7.1 MB
Progress (3): 5.7/9.7 MB | 1.6/2.4 MB | 0.2/7.1 MB
Progress (3): 5.7/9.7 MB | 1.6/2.4 MB | 0.2/7.1 MB
Progress (3): 5.7/9.7 MB | 1.6/2.4 MB | 0.2/7.1 MB
Progress (3): 5.7/9.7 MB | 1.6/2.4 MB | 0.2/7.1 MB
Progress (3): 5.7/9.7 MB | 1.6/2.4 MB | 0.2/7.1 MB
Progress (3): 5.8/9.7 MB | 1.6/2.4 MB | 0.2/7.1 MB
Progress (3): 5.8/9.7 MB | 1.6/2.4 MB | 0.2/7.1 MB
Progress (3): 5.8/9.7 MB | 1.7/2.4 MB | 0.2/7.1 MB
Progress (3): 5.8/9.7 MB | 1.7/2.4 MB | 0.2/7.1 MB
Progress (3): 5.8/9.7 MB | 1.7/2.4 MB | 0.2/7.1 MB
Progress (3): 5.8/9.7 MB | 1.7/2.4 MB | 0.3/7.1 MB
Progress (3): 5.8/9.7 MB | 1.7/2.4 MB | 0.3/7.1 MB
Progress (3): 5.8/9.7 MB | 1.7/2.4 MB | 0.3/7.1 MB
Progress (3): 5.8/9.7 MB | 1.7/2.4 MB | 0.3/7.1 MB
Progress (3): 5.9/9.7 MB | 1.7/2.4 MB | 0.3/7.1 MB
Progress (3): 5.9/9.7 MB | 1.7/2.4 MB | 0.3/7.1 MB
Progress (3): 5.9/9.7 MB | 1.7/2.4 MB | 0.3/7.1 MB
Progress (3): 5.9/9.7 MB | 1.8/2.4 MB | 0.3/7.1 MB
Progress (3): 5.9/9.7 MB | 1.8/2.4 MB | 0.3/7.1 MB
Progress (3): 5.9/9.7 MB | 1.8/2.4 MB | 0.3/7.1 MB
Progress (3): 5.9/9.7 MB | 1.8/2.4 MB | 0.3/7.1 MB
Progress (3): 5.9/9.7 MB | 1.8/2.4 MB | 0.3/7.1 MB
Progress (3): 6.0/9.7 MB | 1.8/2.4 MB | 0.3/7.1 MB
Progress (3): 6.0/9.7 MB | 1.8/2.4 MB | 0.4/7.1 MB
Progress (3): 6.0/9.7 MB | 1.8/2.4 MB | 0.4/7.1 MB
Progress (3): 6.0/9.7 MB | 1.8/2.4 MB | 0.4/7.1 MB
Progress (3): 6.0/9.7 MB | 1.9/2.4 MB | 0.4/7.1 MB
Progress (3): 6.0/9.7 MB | 1.9/2.4 MB | 0.4/7.1 MB
Progress (3): 6.0/9.7 MB | 1.9/2.4 MB | 0.4/7.1 MB
Progress (3): 6.0/9.7 MB | 1.9/2.4 MB | 0.4/7.1 MB
Progress (3): 6.0/9.7 MB | 1.9/2.4 MB | 0.4/7.1 MB
Progress (3): 6.1/9.7 MB | 1.9/2.4 MB | 0.4/7.1 MB
Progress (3): 6.1/9.7 MB | 1.9/2.4 MB | 0.4/7.1 MB
Progress (3): 6.1/9.7 MB | 1.9/2.4 MB | 0.4/7.1 MB
Progress (3): 6.1/9.7 MB | 1.9/2.4 MB | 0.4/7.1 MB
Progress (3): 6.1/9.7 MB | 1.9/2.4 MB | 0.4/7.1 MB
Progress (3): 6.1/9.7 MB | 1.9/2.4 MB | 0.4/7.1 MB
Progress (3): 6.1/9.7 MB | 1.9/2.4 MB | 0.4/7.1 MB
Progress (3): 6.1/9.7 MB | 2.0/2.4 MB | 0.4/7.1 MB
Progress (3): 6.1/9.7 MB | 2.0/2.4 MB | 0.5/7.1 MB
Progress (3): 6.1/9.7 MB | 2.0/2.4 MB | 0.5/7.1 MB
Progress (3): 6.2/9.7 MB | 2.0/2.4 MB | 0.5/7.1 MB
Progress (3): 6.2/9.7 MB | 2.0/2.4 MB | 0.5/7.1 MB
Progress (3): 6.2/9.7 MB | 2.0/2.4 MB | 0.5/7.1 MB
Progress (3): 6.2/9.7 MB | 2.0/2.4 MB | 0.5/7.1 MB
Progress (3): 6.2/9.7 MB | 2.0/2.4 MB | 0.5/7.1 MB
Progress (3): 6.2/9.7 MB | 2.0/2.4 MB | 0.5/7.1 MB
Progress (3): 6.2/9.7 MB | 2.0/2.4 MB | 0.5/7.1 MB
Progress (3): 6.2/9.7 MB | 2.1/2.4 MB | 0.5/7.1 MB
Progress (3): 6.3/9.7 MB | 2.1/2.4 MB | 0.5/7.1 MB
Progress (3): 6.3/9.7 MB | 2.1/2.4 MB | 0.6/7.1 MB
Progress (3): 6.3/9.7 MB | 2.1/2.4 MB | 0.6/7.1 MB
Progress (3): 6.3/9.7 MB | 2.1/2.4 MB | 0.6/7.1 MB
Progress (3): 6.3/9.7 MB | 2.1/2.4 MB | 0.6/7.1 MB
Progress (3): 6.3/9.7 MB | 2.1/2.4 MB | 0.6/7.1 MB
Progress (3): 6.3/9.7 MB | 2.1/2.4 MB | 0.6/7.1 MB
Progress (3): 6.3/9.7 MB | 2.1/2.4 MB | 0.6/7.1 MB
Progress (3): 6.3/9.7 MB | 2.1/2.4 MB | 0.6/7.1 MB
Progress (3): 6.4/9.7 MB | 2.1/2.4 MB | 0.6/7.1 MB
Progress (3): 6.4/9.7 MB | 2.2/2.4 MB | 0.6/7.1 MB
Progress (3): 6.4/9.7 MB | 2.2/2.4 MB | 0.6/7.1 MB
Progress (3): 6.4/9.7 MB | 2.2/2.4 MB | 0.6/7.1 MB
Progress (3): 6.4/9.7 MB | 2.2/2.4 MB | 0.6/7.1 MB
Progress (3): 6.4/9.7 MB | 2.2/2.4 MB | 0.6/7.1 MB
Progress (3): 6.4/9.7 MB | 2.2/2.4 MB | 0.6/7.1 MB
Progress (3): 6.4/9.7 MB | 2.2/2.4 MB | 0.6/7.1 MB
Progress (3): 6.4/9.7 MB | 2.2/2.4 MB | 0.7/7.1 MB
Progress (3): 6.5/9.7 MB | 2.2/2.4 MB | 0.7/7.1 MB
Progress (3): 6.5/9.7 MB | 2.2/2.4 MB | 0.7/7.1 MB
Progress (3): 6.5/9.7 MB | 2.3/2.4 MB | 0.7/7.1 MB
Progress (3): 6.5/9.7 MB | 2.3/2.4 MB | 0.7/7.1 MB
Progress (3): 6.5/9.7 MB | 2.3/2.4 MB | 0.7/7.1 MB
Progress (3): 6.5/9.7 MB | 2.3/2.4 MB | 0.7/7.1 MB
Progress (3): 6.5/9.7 MB | 2.3/2.4 MB | 0.7/7.1 MB
Progress (3): 6.5/9.7 MB | 2.3/2.4 MB | 0.7/7.1 MB
Progress (3): 6.5/9.7 MB | 2.3/2.4 MB | 0.7/7.1 MB
Progress (3): 6.6/9.7 MB | 2.3/2.4 MB | 0.7/7.1 MB
Progress (3): 6.6/9.7 MB | 2.3/2.4 MB | 0.7/7.1 MB
Progress (3): 6.6/9.7 MB | 2.3/2.4 MB | 0.8/7.1 MB
Progress (3): 6.6/9.7 MB | 2.4/2.4 MB | 0.8/7.1 MB
Progress (3): 6.6/9.7 MB | 2.4/2.4 MB | 0.8/7.1 MB
Progress (3): 6.6/9.7 MB | 2.4/2.4 MB | 0.8/7.1 MB
Progress (3): 6.6/9.7 MB | 2.4/2.4 MB | 0.8/7.1 MB
Progress (3): 6.6/9.7 MB | 2.4 MB | 0.8/7.1 MB    
Progress (3): 6.6/9.7 MB | 2.4 MB | 0.8/7.1 MB
Progress (3): 6.7/9.7 MB | 2.4 MB | 0.8/7.1 MB
Progress (3): 6.7/9.7 MB | 2.4 MB | 0.9/7.1 MB
Progress (3): 6.7/9.7 MB | 2.4 MB | 0.9/7.1 MB
Progress (3): 6.7/9.7 MB | 2.4 MB | 0.9/7.1 MB
Progress (3): 6.8/9.7 MB | 2.4 MB | 0.9/7.1 MB
Progress (3): 6.8/9.7 MB | 2.4 MB | 0.9/7.1 MB
Progress (3): 6.8/9.7 MB | 2.4 MB | 0.9/7.1 MB
Progress (3): 6.9/9.7 MB | 2.4 MB | 0.9/7.1 MB
Progress (3): 6.9/9.7 MB | 2.4 MB | 1.0/7.1 MB
Progress (3): 6.9/9.7 MB | 2.4 MB | 1.0/7.1 MB
Progress (3): 6.9/9.7 MB | 2.4 MB | 1.0/7.1 MB
Progress (3): 6.9/9.7 MB | 2.4 MB | 1.1/7.1 MB
Progress (3): 7.0/9.7 MB | 2.4 MB | 1.1/7.1 MB
Progress (3): 7.0/9.7 MB | 2.4 MB | 1.1/7.1 MB
Progress (3): 7.0/9.7 MB | 2.4 MB | 1.1/7.1 MB
Progress (3): 7.0/9.7 MB | 2.4 MB | 1.1/7.1 MB
Progress (3): 7.1/9.7 MB | 2.4 MB | 1.1/7.1 MB
Progress (3): 7.1/9.7 MB | 2.4 MB | 1.2/7.1 MB
Progress (3): 7.1/9.7 MB | 2.4 MB | 1.2/7.1 MB
Progress (3): 7.1/9.7 MB | 2.4 MB | 1.2/7.1 MB
Progress (3): 7.2/9.7 MB | 2.4 MB | 1.2/7.1 MB
Progress (3): 7.2/9.7 MB | 2.4 MB | 1.3/7.1 MB
Progress (3): 7.2/9.7 MB | 2.4 MB | 1.3/7.1 MB
Progress (3): 7.2/9.7 MB | 2.4 MB | 1.3/7.1 MB
Progress (3): 7.3/9.7 MB | 2.4 MB | 1.3/7.1 MB
Progress (3): 7.3/9.7 MB | 2.4 MB | 1.3/7.1 MB
Progress (3): 7.3/9.7 MB | 2.4 MB | 1.4/7.1 MB
Progress (3): 7.3/9.7 MB | 2.4 MB | 1.4/7.1 MB
Progress (3): 7.3/9.7 MB | 2.4 MB | 1.4/7.1 MB
Progress (3): 7.4/9.7 MB | 2.4 MB | 1.4/7.1 MB
Progress (3): 7.4/9.7 MB | 2.4 MB | 1.5/7.1 MB
Progress (3): 7.4/9.7 MB | 2.4 MB | 1.5/7.1 MB
Progress (3): 7.4/9.7 MB | 2.4 MB | 1.5/7.1 MB
Progress (3): 7.5/9.7 MB | 2.4 MB | 1.5/7.1 MB
Progress (3): 7.5/9.7 MB | 2.4 MB | 1.5/7.1 MB
Progress (3): 7.5/9.7 MB | 2.4 MB | 1.5/7.1 MB
Progress (3): 7.5/9.7 MB | 2.4 MB | 1.6/7.1 MB
Progress (3): 7.6/9.7 MB | 2.4 MB | 1.6/7.1 MB
Progress (3): 7.6/9.7 MB | 2.4 MB | 1.6/7.1 MB
Progress (3): 7.6/9.7 MB | 2.4 MB | 1.6/7.1 MB
Progress (3): 7.6/9.7 MB | 2.4 MB | 1.7/7.1 MB
Progress (3): 7.6/9.7 MB | 2.4 MB | 1.7/7.1 MB
Progress (3): 7.7/9.7 MB | 2.4 MB | 1.7/7.1 MB
Progress (3): 7.7/9.7 MB | 2.4 MB | 1.8/7.1 MB
Progress (3): 7.7/9.7 MB | 2.4 MB | 1.8/7.1 MB
Progress (3): 7.7/9.7 MB | 2.4 MB | 1.8/7.1 MB
Progress (3): 7.8/9.7 MB | 2.4 MB | 1.8/7.1 MB
Progress (3): 7.8/9.7 MB | 2.4 MB | 1.8/7.1 MB
Progress (3): 7.8/9.7 MB | 2.4 MB | 1.8/7.1 MB
Progress (3): 7.8/9.7 MB | 2.4 MB | 1.9/7.1 MB
Progress (3): 7.9/9.7 MB | 2.4 MB | 1.9/7.1 MB
Progress (3): 7.9/9.7 MB | 2.4 MB | 1.9/7.1 MB
Progress (3): 7.9/9.7 MB | 2.4 MB | 1.9/7.1 MB
Progress (3): 7.9/9.7 MB | 2.4 MB | 2.0/7.1 MB
Progress (3): 8.0/9.7 MB | 2.4 MB | 2.0/7.1 MB
Progress (3): 8.0/9.7 MB | 2.4 MB | 2.0/7.1 MB
Progress (3): 8.0/9.7 MB | 2.4 MB | 2.0/7.1 MB
Progress (3): 8.0/9.7 MB | 2.4 MB | 2.0/7.1 MB
Progress (3): 8.0/9.7 MB | 2.4 MB | 2.1/7.1 MB
Progress (3): 8.1/9.7 MB | 2.4 MB | 2.1/7.1 MB
Progress (3): 8.1/9.7 MB | 2.4 MB | 2.1/7.1 MB
Progress (3): 8.1/9.7 MB | 2.4 MB | 2.1/7.1 MB
Progress (3): 8.1/9.7 MB | 2.4 MB | 2.2/7.1 MB
Progress (3): 8.2/9.7 MB | 2.4 MB | 2.2/7.1 MB
Progress (3): 8.2/9.7 MB | 2.4 MB | 2.2/7.1 MB
Progress (3): 8.2/9.7 MB | 2.4 MB | 2.2/7.1 MB
Progress (3): 8.2/9.7 MB | 2.4 MB | 2.2/7.1 MB
Progress (3): 8.3/9.7 MB | 2.4 MB | 2.2/7.1 MB
Progress (3): 8.3/9.7 MB | 2.4 MB | 2.3/7.1 MB
Progress (3): 8.3/9.7 MB | 2.4 MB | 2.3/7.1 MB
Progress (3): 8.3/9.7 MB | 2.4 MB | 2.3/7.1 MB
Progress (3): 8.3/9.7 MB | 2.4 MB | 2.4/7.1 MB
Progress (3): 8.3/9.7 MB | 2.4 MB | 2.4/7.1 MB
                                              
Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-network-common_2.12/3.0.1/spark-network-common_2.12-3.0.1.jar (2.4 MB at 6.1 MB/s)
Progress (2): 8.3/9.7 MB | 2.4/7.1 MB
Progress (2): 8.4/9.7 MB | 2.4/7.1 MB
Progress (2): 8.4/9.7 MB | 2.4/7.1 MB
Progress (2): 8.4/9.7 MB | 2.4/7.1 MB
Progress (2): 8.4/9.7 MB | 2.5/7.1 MB
Progress (2): 8.5/9.7 MB | 2.5/7.1 MB
Progress (2): 8.5/9.7 MB | 2.5/7.1 MB
Progress (2): 8.5/9.7 MB | 2.5/7.1 MB
Progress (2): 8.5/9.7 MB | 2.6/7.1 MB
Progress (2): 8.6/9.7 MB | 2.6/7.1 MB
Progress (2): 8.6/9.7 MB | 2.6/7.1 MB
Progress (2): 8.6/9.7 MB | 2.6/7.1 MB
Progress (2): 8.6/9.7 MB | 2.7/7.1 MB
Progress (2): 8.6/9.7 MB | 2.7/7.1 MB
Progress (2): 8.7/9.7 MB | 2.7/7.1 MB
Progress (2): 8.7/9.7 MB | 2.7/7.1 MB
Progress (2): 8.7/9.7 MB | 2.7/7.1 MB
Progress (2): 8.7/9.7 MB | 2.8/7.1 MB
Progress (2): 8.8/9.7 MB | 2.8/7.1 MB
Progress (2): 8.8/9.7 MB | 2.8/7.1 MB
Progress (2): 8.8/9.7 MB | 2.8/7.1 MB
Progress (2): 8.8/9.7 MB | 2.9/7.1 MB
Progress (2): 8.9/9.7 MB | 2.9/7.1 MB
Progress (2): 8.9/9.7 MB | 2.9/7.1 MB
Progress (2): 8.9/9.7 MB | 2.9/7.1 MB
Progress (2): 8.9/9.7 MB | 2.9/7.1 MB
Progress (2): 9.0/9.7 MB | 2.9/7.1 MB
Progress (2): 9.0/9.7 MB | 3.0/7.1 MB
Progress (2): 9.0/9.7 MB | 3.0/7.1 MB
Progress (2): 9.0/9.7 MB | 3.0/7.1 MB
Progress (2): 9.0/9.7 MB | 3.1/7.1 MB
Progress (2): 9.1/9.7 MB | 3.1/7.1 MB
Progress (2): 9.1/9.7 MB | 3.1/7.1 MB
Progress (2): 9.1/9.7 MB | 3.1/7.1 MB
Progress (2): 9.1/9.7 MB | 3.1/7.1 MB
Progress (2): 9.2/9.7 MB | 3.1/7.1 MB
Progress (2): 9.2/9.7 MB | 3.2/7.1 MB
Progress (2): 9.2/9.7 MB | 3.2/7.1 MB
Progress (2): 9.2/9.7 MB | 3.2/7.1 MB
Progress (2): 9.3/9.7 MB | 3.2/7.1 MB
Progress (2): 9.3/9.7 MB | 3.3/7.1 MB
Progress (2): 9.3/9.7 MB | 3.3/7.1 MB
Progress (2): 9.3/9.7 MB | 3.3/7.1 MB
Progress (2): 9.3/9.7 MB | 3.3/7.1 MB
Progress (2): 9.4/9.7 MB | 3.3/7.1 MB
Progress (2): 9.4/9.7 MB | 3.4/7.1 MB
Progress (2): 9.4/9.7 MB | 3.4/7.1 MB
Progress (2): 9.4/9.7 MB | 3.4/7.1 MB
Progress (2): 9.5/9.7 MB | 3.4/7.1 MB
Progress (2): 9.5/9.7 MB | 3.5/7.1 MB
Progress (2): 9.5/9.7 MB | 3.5/7.1 MB
Progress (2): 9.5/9.7 MB | 3.5/7.1 MB
Progress (2): 9.6/9.7 MB | 3.5/7.1 MB
Progress (2): 9.6/9.7 MB | 3.6/7.1 MB
Progress (2): 9.6/9.7 MB | 3.6/7.1 MB
Progress (2): 9.6/9.7 MB | 3.6/7.1 MB
Progress (2): 9.7/9.7 MB | 3.6/7.1 MB
Progress (2): 9.7/9.7 MB | 3.6/7.1 MB
Progress (2): 9.7 MB | 3.6/7.1 MB    
Progress (2): 9.7 MB | 3.7/7.1 MB
Progress (2): 9.7 MB | 3.7/7.1 MB
Progress (2): 9.7 MB | 3.8/7.1 MB
Progress (2): 9.7 MB | 3.8/7.1 MB
Progress (2): 9.7 MB | 3.8/7.1 MB
Progress (2): 9.7 MB | 3.9/7.1 MB
Progress (2): 9.7 MB | 3.9/7.1 MB
Progress (2): 9.7 MB | 4.0/7.1 MB
Progress (2): 9.7 MB | 4.0/7.1 MB
Progress (2): 9.7 MB | 4.0/7.1 MB
Progress (2): 9.7 MB | 4.1/7.1 MB
Progress (2): 9.7 MB | 4.1/7.1 MB
Progress (2): 9.7 MB | 4.2/7.1 MB
Progress (2): 9.7 MB | 4.2/7.1 MB
Progress (2): 9.7 MB | 4.3/7.1 MB
Progress (2): 9.7 MB | 4.3/7.1 MB
Progress (2): 9.7 MB | 4.3/7.1 MB
Progress (2): 9.7 MB | 4.4/7.1 MB
Progress (2): 9.7 MB | 4.4/7.1 MB
Progress (2): 9.7 MB | 4.5/7.1 MB
Progress (2): 9.7 MB | 4.5/7.1 MB
Progress (2): 9.7 MB | 4.5/7.1 MB
Progress (2): 9.7 MB | 4.6/7.1 MB
Progress (2): 9.7 MB | 4.6/7.1 MB
Progress (2): 9.7 MB | 4.7/7.1 MB
Progress (2): 9.7 MB | 4.7/7.1 MB
Progress (2): 9.7 MB | 4.7/7.1 MB
Progress (2): 9.7 MB | 4.8/7.1 MB
Progress (2): 9.7 MB | 4.8/7.1 MB
Progress (2): 9.7 MB | 4.9/7.1 MB
Progress (2): 9.7 MB | 4.9/7.1 MB
Progress (2): 9.7 MB | 4.9/7.1 MB
Progress (2): 9.7 MB | 5.0/7.1 MB
Progress (2): 9.7 MB | 5.0/7.1 MB
Progress (2): 9.7 MB | 5.1/7.1 MB
Progress (2): 9.7 MB | 5.1/7.1 MB
Progress (2): 9.7 MB | 5.2/7.1 MB
Progress (2): 9.7 MB | 5.2/7.1 MB
Progress (2): 9.7 MB | 5.2/7.1 MB
Progress (2): 9.7 MB | 5.3/7.1 MB
Progress (2): 9.7 MB | 5.3/7.1 MB
Progress (2): 9.7 MB | 5.4/7.1 MB
                                 
Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-core_2.12/3.0.1/spark-core_2.12-3.0.1.jar (9.7 MB at 19 MB/s)
Progress (1): 5.4/7.1 MB
Progress (1): 5.4/7.1 MB
Progress (1): 5.5/7.1 MB
Progress (1): 5.5/7.1 MB
Progress (1): 5.6/7.1 MB
Progress (1): 5.6/7.1 MB
Progress (1): 5.6/7.1 MB
Progress (1): 5.7/7.1 MB
Progress (1): 5.7/7.1 MB
Progress (1): 5.8/7.1 MB
Progress (1): 5.8/7.1 MB
Progress (1): 5.8/7.1 MB
Progress (1): 5.9/7.1 MB
Progress (1): 5.9/7.1 MB
Progress (1): 6.0/7.1 MB
Progress (1): 6.0/7.1 MB
Progress (1): 6.1/7.1 MB
Progress (1): 6.1/7.1 MB
Progress (1): 6.1/7.1 MB
Progress (1): 6.2/7.1 MB
Progress (1): 6.2/7.1 MB
Progress (1): 6.3/7.1 MB
Progress (1): 6.3/7.1 MB
Progress (1): 6.3/7.1 MB
Progress (1): 6.4/7.1 MB
Progress (1): 6.4/7.1 MB
Progress (1): 6.5/7.1 MB
Progress (1): 6.5/7.1 MB
Progress (1): 6.5/7.1 MB
Progress (1): 6.6/7.1 MB
Progress (1): 6.6/7.1 MB
Progress (1): 6.7/7.1 MB
Progress (1): 6.7/7.1 MB
Progress (1): 6.7/7.1 MB
Progress (1): 6.8/7.1 MB
Progress (1): 6.8/7.1 MB
Progress (1): 6.9/7.1 MB
Progress (1): 6.9/7.1 MB
Progress (1): 7.0/7.1 MB
Progress (1): 7.0/7.1 MB
Progress (1): 7.0/7.1 MB
Progress (1): 7.1/7.1 MB
Progress (1): 7.1/7.1 MB
Progress (1): 7.1 MB    
                    
Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-sql_2.12/3.0.1/spark-sql_2.12-3.0.1.jar (7.1 MB at 12 MB/s)
Progress (1): 0/9.4 MB
Progress (1): 0.1/9.4 MB
Progress (1): 0.1/9.4 MB
Progress (1): 0.2/9.4 MB
Progress (1): 0.2/9.4 MB
Progress (1): 0.3/9.4 MB
Progress (1): 0.3/9.4 MB
Progress (1): 0.4/9.4 MB
Progress (1): 0.4/9.4 MB
Progress (1): 0.5/9.4 MB
Progress (1): 0.5/9.4 MB
Progress (1): 0.6/9.4 MB
Progress (1): 0.6/9.4 MB
Progress (1): 0.7/9.4 MB
Progress (1): 0.7/9.4 MB
Progress (1): 0.8/9.4 MB
Progress (1): 0.8/9.4 MB
Progress (1): 0.9/9.4 MB
Progress (1): 0.9/9.4 MB
Progress (1): 1.0/9.4 MB
Progress (1): 1.0/9.4 MB
Progress (1): 1.1/9.4 MB
Progress (1): 1.1/9.4 MB
Progress (1): 1.2/9.4 MB
Progress (1): 1.2/9.4 MB
Progress (1): 1.3/9.4 MB
Progress (1): 1.3/9.4 MB
Progress (1): 1.4/9.4 MB
Progress (1): 1.4/9.4 MB
Progress (1): 1.5/9.4 MB
Progress (1): 1.5/9.4 MB
Progress (1): 1.6/9.4 MB
Progress (1): 1.6/9.4 MB
Progress (1): 1.7/9.4 MB
Progress (1): 1.7/9.4 MB
Progress (1): 1.8/9.4 MB
Progress (1): 1.8/9.4 MB
Progress (1): 1.9/9.4 MB
Progress (1): 1.9/9.4 MB
Progress (1): 2.0/9.4 MB
Progress (1): 2.0/9.4 MB
Progress (1): 2.1/9.4 MB
Progress (1): 2.1/9.4 MB
Progress (1): 2.1/9.4 MB
Progress (1): 2.2/9.4 MB
Progress (1): 2.2/9.4 MB
Progress (1): 2.3/9.4 MB
Progress (1): 2.3/9.4 MB
Progress (1): 2.4/9.4 MB
Progress (1): 2.4/9.4 MB
Progress (1): 2.5/9.4 MB
Progress (1): 2.5/9.4 MB
Progress (1): 2.6/9.4 MB
Progress (1): 2.6/9.4 MB
Progress (1): 2.7/9.4 MB
Progress (1): 2.7/9.4 MB
Progress (1): 2.8/9.4 MB
Progress (1): 2.8/9.4 MB
Progress (1): 2.9/9.4 MB
Progress (1): 2.9/9.4 MB
Progress (1): 3.0/9.4 MB
Progress (1): 3.0/9.4 MB
Progress (1): 3.1/9.4 MB
Progress (1): 3.1/9.4 MB
Progress (1): 3.2/9.4 MB
Progress (1): 3.2/9.4 MB
Progress (1): 3.3/9.4 MB
Progress (1): 3.3/9.4 MB
Progress (1): 3.4/9.4 MB
Progress (1): 3.4/9.4 MB
Progress (1): 3.5/9.4 MB
Progress (1): 3.5/9.4 MB
Progress (1): 3.6/9.4 MB
Progress (1): 3.6/9.4 MB
Progress (1): 3.7/9.4 MB
Progress (1): 3.7/9.4 MB
Progress (1): 3.8/9.4 MB
Progress (1): 3.8/9.4 MB
Progress (1): 3.9/9.4 MB
Progress (1): 3.9/9.4 MB
Progress (1): 4.0/9.4 MB
Progress (1): 4.0/9.4 MB
Progress (1): 4.1/9.4 MB
Progress (1): 4.1/9.4 MB
Progress (1): 4.2/9.4 MB
Progress (1): 4.2/9.4 MB
Progress (1): 4.3/9.4 MB
Progress (1): 4.3/9.4 MB
Progress (1): 4.4/9.4 MB
Progress (1): 4.4/9.4 MB
Progress (1): 4.5/9.4 MB
Progress (1): 4.5/9.4 MB
Progress (1): 4.6/9.4 MB
Progress (1): 4.6/9.4 MB
Progress (1): 4.7/9.4 MB
Progress (1): 4.7/9.4 MB
Progress (1): 4.8/9.4 MB
Progress (1): 4.8/9.4 MB
Progress (1): 4.9/9.4 MB
Progress (1): 4.9/9.4 MB
Progress (1): 5.0/9.4 MB
Progress (1): 5.0/9.4 MB
Progress (1): 5.0/9.4 MB
Progress (1): 5.1/9.4 MB
Progress (1): 5.1/9.4 MB
Progress (1): 5.2/9.4 MB
Progress (1): 5.2/9.4 MB
Progress (1): 5.3/9.4 MB
Progress (1): 5.3/9.4 MB
Progress (1): 5.4/9.4 MB
Progress (1): 5.4/9.4 MB
Progress (1): 5.5/9.4 MB
Progress (1): 5.5/9.4 MB
Progress (1): 5.6/9.4 MB
Progress (1): 5.6/9.4 MB
Progress (1): 5.7/9.4 MB
Progress (1): 5.7/9.4 MB
Progress (1): 5.8/9.4 MB
Progress (1): 5.8/9.4 MB
Progress (1): 5.9/9.4 MB
Progress (1): 5.9/9.4 MB
Progress (1): 6.0/9.4 MB
Progress (1): 6.0/9.4 MB
Progress (1): 6.1/9.4 MB
Progress (1): 6.1/9.4 MB
Progress (1): 6.2/9.4 MB
Progress (1): 6.2/9.4 MB
Progress (1): 6.3/9.4 MB
Progress (1): 6.3/9.4 MB
Progress (1): 6.4/9.4 MB
Progress (1): 6.4/9.4 MB
Progress (1): 6.5/9.4 MB
Progress (1): 6.5/9.4 MB
Progress (1): 6.6/9.4 MB
Progress (1): 6.6/9.4 MB
Progress (1): 6.7/9.4 MB
Progress (1): 6.7/9.4 MB
Progress (1): 6.8/9.4 MB
Progress (1): 6.8/9.4 MB
Progress (1): 6.9/9.4 MB
Progress (1): 6.9/9.4 MB
Progress (1): 7.0/9.4 MB
Progress (1): 7.0/9.4 MB
Progress (1): 7.1/9.4 MB
Progress (1): 7.1/9.4 MB
Progress (1): 7.2/9.4 MB
Progress (1): 7.2/9.4 MB
Progress (1): 7.3/9.4 MB
Progress (1): 7.3/9.4 MB
Progress (1): 7.4/9.4 MB
Progress (1): 7.4/9.4 MB
Progress (1): 7.5/9.4 MB
Progress (1): 7.5/9.4 MB
Progress (1): 7.6/9.4 MB
Progress (1): 7.6/9.4 MB
Progress (1): 7.7/9.4 MB
Progress (1): 7.7/9.4 MB
Progress (1): 7.8/9.4 MB
Progress (1): 7.8/9.4 MB
Progress (1): 7.9/9.4 MB
Progress (1): 7.9/9.4 MB
Progress (1): 7.9/9.4 MB
Progress (1): 8.0/9.4 MB
Progress (1): 8.0/9.4 MB
Progress (1): 8.1/9.4 MB
Progress (1): 8.1/9.4 MB
Progress (1): 8.2/9.4 MB
Progress (1): 8.2/9.4 MB
Progress (1): 8.3/9.4 MB
Progress (1): 8.3/9.4 MB
Progress (1): 8.4/9.4 MB
Progress (1): 8.4/9.4 MB
Progress (1): 8.5/9.4 MB
Progress (1): 8.5/9.4 MB
Progress (1): 8.6/9.4 MB
Progress (1): 8.6/9.4 MB
Progress (1): 8.7/9.4 MB
Progress (1): 8.7/9.4 MB
Progress (1): 8.8/9.4 MB
Progress (1): 8.8/9.4 MB
Progress (1): 8.9/9.4 MB
Progress (1): 8.9/9.4 MB
Progress (1): 9.0/9.4 MB
Progress (1): 9.0/9.4 MB
Progress (1): 9.1/9.4 MB
Progress (1): 9.1/9.4 MB
Progress (1): 9.2/9.4 MB
Progress (1): 9.2/9.4 MB
Progress (1): 9.3/9.4 MB
Progress (1): 9.3/9.4 MB
Progress (1): 9.4/9.4 MB
Progress (1): 9.4 MB    
                    
Downloaded from central: https://repo.maven.apache.org/maven2/org/apache/spark/spark-catalyst_2.12/3.0.1/spark-catalyst_2.12-3.0.1.jar (9.4 MB at 4.2 MB/s)
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-core-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-core-spark3_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-core-spark3_2.12 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/main/scala added.
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/generated-sources/src/main/scala added.
[INFO] 
[INFO] --- exec-maven-plugin:1.5.0:java (generate-scala-products) @ adam-core-spark3_2.12 ---
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] 
[INFO] --- exec-maven-plugin:1.5.0:java (generate-scala-projection-fields) @ adam-core-spark3_2.12 ---
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-core-spark3_2.12 ---
[INFO] Modified 2 of 204 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-core-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-core-spark3_2.12 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/main/java:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/main/scala:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/generated-sources/src/main/scala:-1: info: compiling
[INFO] Compiling 140 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/2.12.8/classes at 1599677699383
[WARNING] warning: there were 21 deprecation warnings
[WARNING] warning: there were 31 deprecation warnings (since 0.21.0)
[WARNING] warning: there was one deprecation warning (since 1.0.6)
[WARNING] warning: there was one deprecation warning (since 2.11.0)
[WARNING] warning: there were 175 deprecation warnings (since 2.12.0)
[WARNING] warning: there was one deprecation warning (since 2.12.7)
[WARNING] warning: there were 230 deprecation warnings in total; re-run with -deprecation for details
[WARNING] warning: there were 5 feature warnings; re-run with -feature for details
[WARNING] 8 warnings found
[INFO] prepare-compile in 0 s
[INFO] compile in 26 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-core-spark3_2.12 ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 6 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/2.12.8/classes
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-core-spark3_2.12 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-core-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 152 resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-core-spark3_2.12 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala:-1: info: compiling
[INFO] Compiling 70 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/2.12.8/test-classes at 1599677727145
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/algorithms/consensus/NormalizationUtilsSuite.scala:59: warning: method recordToRichRecord in object RichAlignment is deprecated (since 0.21.0): Use explicit conversion wherever possible in new development.
[WARNING]       .build()
[WARNING]             ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/algorithms/consensus/NormalizationUtilsSuite.scala:61: warning: method richRecordToRecord in object RichAlignment is deprecated (since 0.21.0): Use explicit conversion wherever possible in new development.
[WARNING]     val new_cigar = NormalizationUtils.leftAlignIndel(read)
[WARNING]                                                       ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/algorithms/consensus/NormalizationUtilsSuite.scala:66: warning: method richRecordToRecord in object RichAlignment is deprecated (since 0.21.0): Use explicit conversion wherever possible in new development.
[WARNING]     assert(RichAlignment(read).samtoolsCigar.getReadLength === new_cigar.getReadLength)
[WARNING]                          ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/AlignmentConverterSuite.scala:171: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     val newSAMRecord = newSAMReader.iterator().dropWhile(r => r.getReadName != readName)
[WARNING]                                             ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/AlignmentConverterSuite.scala:274: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       .setAlignments(seqAsJavaList(alignments))
[WARNING]                      ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/AlignmentConverterSuite.scala:311: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       .setAlignments(seqAsJavaList(alignments))
[WARNING]                      ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/AlignmentConverterSuite.scala:335: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     val fragment = Fragment.newBuilder().setAlignments(List(record)).build()
[WARNING]                                                            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/SAMRecordConverterSuite.scala:54: warning: method getNotPrimaryAlignmentFlag in class SAMRecord is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(!testAlignment.getPrimaryAlignment === testSAMRecord.getNotPrimaryAlignmentFlag)
[WARNING]                                                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/SAMRecordConverterSuite.scala:89: warning: method getNotPrimaryAlignmentFlag in class SAMRecord is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(!testAlignment.getPrimaryAlignment === testSAMRecord.getNotPrimaryAlignmentFlag)
[WARNING]                                                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/SAMRecordConverterSuite.scala:106: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       val samIter = asScalaIterator(newSAMReader.iterator())
[WARNING]                     ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:53: warning: method extractDictionary in class SAMSequenceDictionaryExtractor is deprecated: see corresponding Javadoc for more information.
[WARNING]     SequenceDictionary(SAMSequenceDictionaryExtractor.extractDictionary(new File(path)))
[WARNING]                                                       ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:63: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     .alleles(List(Allele.create("A", true), Allele.create("T")))
[WARNING]                  ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:69: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     .alleles(List(Allele.create("A", true), Allele.create("T"), Allele.create("G")))
[WARNING]                  ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:75: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     .alleles(List(Allele.create("A", true), Allele.create("<NON_REF>", false)))
[WARNING]                  ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:81: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     .alleles(List(Allele.create("A", true), Allele.create("<CN0>", false)))
[WARNING]                  ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:109: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       .alleles(List(Allele.create("A", true), Allele.create("T")))
[WARNING]                    ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:143: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       GenotypeBuilder.create("NA12878", vcb.getAlleles(), genotypeAttributes))
[WARNING]                                                           ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:154: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     assert(adamGT.getAlleles.sameElements(List(GenotypeAllele.REF, GenotypeAllele.ALT)))
[WARNING]                   ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:184: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       assert(adamVariant.variant.getFiltersFailed.sameElements(List("LowMQ")))
[WARNING]                                  ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:219: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       assert(adamGT.getVariantCallingAnnotations.getFiltersFailed.sameElements(List("LowMQ")))
[WARNING]                                                  ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:234: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     assert(htsjdkVC.getAlternateAlleles.sameElements(List(Allele.create("T"))))
[WARNING]                     ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:245: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       .setStrandBiasComponents(List(0, 2, 4, 6).map(i => i: java.lang.Integer))
[WARNING]                                                    ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:246: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       .setAlleles(List(GenotypeAllele.REF, GenotypeAllele.ALT))
[WARNING]                       ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:279: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       .setStrandBiasComponents(List(0, 2).map(i => i: java.lang.Integer))
[WARNING]                                              ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:280: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       .setAlleles(List(GenotypeAllele.REF, GenotypeAllele.ALT))
[WARNING]                       ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:298: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       .setStrandBiasComponents(List(0, 2).map(i => i: java.lang.Integer))
[WARNING]                                              ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:299: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       .setAlleles(List(GenotypeAllele.REF, GenotypeAllele.ALT))
[WARNING]                       ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:320: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     for ((allele, idx) <- vc.getAlternateAlleles.zipWithIndex) {
[WARNING]                              ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:328: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     val gb = new GenotypeBuilder("NA12878", List(Allele.create("T"), Allele.create("G")))
[WARNING]                                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:347: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     assert(adamGT1.getAlleles.sameElements(List(GenotypeAllele.ALT, GenotypeAllele.OTHER_ALT)))
[WARNING]                    ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:349: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     assert(adamGT1.getGenotypeLikelihoods
[WARNING]                    ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:354: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     assert(adamGT2.getAlleles.sameElements(List(GenotypeAllele.OTHER_ALT, GenotypeAllele.ALT)))
[WARNING]                    ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:356: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     assert(adamGT2.getGenotypeLikelihoods
[WARNING]                    ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:380: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     val gb = new GenotypeBuilder("NA12878", List(Allele.create("A", true), Allele.create("A", true)))
[WARNING]                                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:393: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     assert(adamGT.getAlleles.sameElements(List(GenotypeAllele.REF, GenotypeAllele.REF)))
[WARNING]                   ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:396: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     assert(adamGT.getNonReferenceLikelihoods
[WARNING]                   ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:421: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     assert(variant.variant.getNames.length === 1)
[WARNING]                            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:433: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     assert(variant.variant.getNames.length === 2)
[WARNING]                            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:543: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       genotypeAttributes)))((bldr, fn) => {
[WARNING]       ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:693: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     assert(gls(0) < -0.99e-1 && gls(0) > -1.1e-1)
[WARNING]            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:693: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     assert(gls(0) < -0.99e-1 && gls(0) > -1.1e-1)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:694: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     assert(gls(1) < -0.99e-3 && gls(1) > -1.1e-3)
[WARNING]            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:694: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     assert(gls(1) < -0.99e-3 && gls(1) > -1.1e-3)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:695: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     assert(gls(2) < -0.99e-6 && gls(2) > -1.1e-6)
[WARNING]            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:695: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     assert(gls(2) < -0.99e-6 && gls(2) > -1.1e-6)
[WARNING]                                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:714: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     assert(sb(0) === 10)
[WARNING]            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:715: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     assert(sb(1) === 12)
[WARNING]            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:716: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     assert(sb(2) === 14)
[WARNING]            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:717: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     assert(sb(3) === 16)
[WARNING]            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:762: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     assert(failedFilters(0) === "FAILED_FILTER")
[WARNING]            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:776: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     assert(failedFilters(0) === "FAILED_FILTER1")
[WARNING]            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:777: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     assert(failedFilters(1) === "FAILED_FILTER2")
[WARNING]            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:778: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     assert(failedFilters(2) === "FAILED_FILTER3")
[WARNING]            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:930: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]         .map(d => d: java.lang.Double))
[WARNING]             ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:954: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]           .map(i => i: java.lang.Integer))
[WARNING]               ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:962: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]         .map(i => i: java.lang.Integer))
[WARNING]             ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:1089: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       .setFiltersFailed(Seq("lowmq"))
[WARNING]                            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:1101: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       .setFiltersFailed(Seq("lowmq", "lowdp"))
[WARNING]                            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:1195: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     assert(v.getNames.length === 1)
[WARNING]              ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:1205: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     assert(v.getNames.length === 2)
[WARNING]              ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:1262: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]         vcb.filters(Set("FAILED1", "FAILED2", "FAILED3"))
[WARNING]                        ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:1267: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     val failedSet = v.getFiltersFailed.toSet
[WARNING]                       ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:1285: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       .setNames(Seq("name"))
[WARNING]                    ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:1295: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       .setNames(Seq("name1", "name2"))
[WARNING]                    ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:1364: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       .setFiltersFailed(Seq("FAILED"))
[WARNING]                            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:1378: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       .setFiltersFailed(Seq("FAILED1", "FAILED2"))
[WARNING]                            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:1493: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       10).map(i => i: java.lang.Integer)
[WARNING]              ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:1501: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       10, 13, 16).map(i => i: java.lang.Integer)
[WARNING]                      ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:1516: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       0.1f).map(i => i: java.lang.Float)
[WARNING]                ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:1523: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     val acList: java.util.List[String] = List("+Inf")
[WARNING]                                              ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:1530: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     val acList: java.util.List[String] = List("-Inf")
[WARNING]                                              ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:1538: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       0.1f, 0.01f, 0.001f).map(i => i: java.lang.Float)
[WARNING]                               ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:1552: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     val acList: java.util.List[String] = List("10D90M")
[WARNING]                                              ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:1559: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]     val acList: java.util.List[String] = List("10D90M", "100M", "90M10D")
[WARNING]                                              ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:1575: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       5, 10).map(i => i: java.lang.Integer)
[WARNING]                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:1584: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       5, 10, 13, 16).map(i => i: java.lang.Integer)
[WARNING]                         ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:1601: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       5, 10).map(i => i: java.lang.Integer)
[WARNING]                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:1610: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       5, 10, 13, 16).map(i => i: java.lang.Integer)
[WARNING]                         ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:1627: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       5, 10).map(i => i: java.lang.Integer)
[WARNING]                 ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:1636: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       5, 10, 13, 16).map(i => i: java.lang.Integer)
[WARNING]                         ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:2436: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       Map[String, java.lang.Object](("ONE_INT", "42")))
[WARNING]                                    ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:2459: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       Map[String, java.lang.Object](("FOUR_INTS", "5,10,15,20")))
[WARNING]                                    ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:2482: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       Map[String, java.lang.Object](("FOUR_FLOATS", "5.0,10.1,15.2,20.3")))
[WARNING]                                    ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:2505: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       Map[String, java.lang.Object](("A_INT", "10,15,20")))
[WARNING]                                    ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:2528: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       Map[String, java.lang.Object](("R_INT", "5,10,15,20")))
[WARNING]                                    ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:2551: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       Map[String, java.lang.Object](("R_STRING", "foo,bar,baz")))
[WARNING]                                    ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/converters/VariantContextConverterSuite.scala:2574: warning: object JavaConversions in package collection is deprecated (since 2.12.0): use JavaConverters
[WARNING]       Map[String, java.lang.Object](("STRING_G", "foo,bar,baz")))
[WARNING]                                    ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/CoverageSuite.scala:37: warning: variable start in class Feature is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(coverageAfterConversion.start == featureToConvert.start)
[WARNING]                                                              ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/CoverageSuite.scala:38: warning: variable end in class Feature is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(coverageAfterConversion.end == featureToConvert.end)
[WARNING]                                                            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/CoverageSuite.scala:40: warning: variable score in class Feature is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(coverageAfterConversion.count == featureToConvert.score)
[WARNING]                                                              ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/CoverageSuite.scala:57: warning: variable start in class Feature is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(coverageAfterConversion.start == featureToConvert.start)
[WARNING]                                                              ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/CoverageSuite.scala:58: warning: variable end in class Feature is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(coverageAfterConversion.end == featureToConvert.end)
[WARNING]                                                            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/CoverageSuite.scala:60: warning: variable score in class Feature is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(coverageAfterConversion.count == featureToConvert.score)
[WARNING]                                                              ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/CoverageSuite.scala:61: warning: variable sampleId in class Feature is deprecated: see corresponding Javadoc for more information.
[WARNING]     assert(coverageAfterConversion.optSampleId == Some(featureToConvert.sampleId))
[WARNING]                                                                         ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/MdTagSuite.scala:194: warning: method recordToRichRecord in object RichAlignment is deprecated (since 0.21.0): Use explicit conversion wherever possible in new development.
[WARNING]     assert(read.mdTag.get.end === read.getEnd)
[WARNING]            ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/MdTagSuite.scala:475: warning: method recordToRichRecord in object RichAlignment is deprecated (since 0.21.0): Use explicit conversion wherever possible in new development.
[WARNING]     val tag = read.mdTag.get
[WARNING]               ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/MdTagSuite.scala:482: warning: method recordToRichRecord in object RichAlignment is deprecated (since 0.21.0): Use explicit conversion wherever possible in new development.
[WARNING]     assert(tag.getReference(read) === "AAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGGGGAAAAAAAAAAGGGGGGGGGGAAAAAAAAAAA")
[WARNING]                             ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/MdTagSuite.scala:495: warning: method recordToRichRecord in object RichAlignment is deprecated (since 0.21.0): Use explicit conversion wherever possible in new development.
[WARNING]     val tag = read.mdTag.get
[WARNING]               ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/MdTagSuite.scala:496: warning: method recordToRichRecord in object RichAlignment is deprecated (since 0.21.0): Use explicit conversion wherever possible in new development.
[WARNING]     assert(tag.getReference(read, withGaps = true) === "AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGGGGAAAAAAAAAAA")
[WARNING]                             ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala/org/bdgenomics/adam/models/MdTagSuite.scala:510: warning: method recordToRichRecord in object RichAlignment is deprecated (since 0.21.0): Use explicit conversion wherever possible in new development.
[WARNING]     val newTag = MdTag.moveAlignment(read, newCigar)
[WARNING]                                      ^
[WARNING] 168 warnings found
[INFO] prepare-compile in 0 s
[INFO] compile in 28 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-core-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-core-spark3_2.12 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-core-spark3_2.12 ---
Discovery starting.
Discovery completed in 1 second, 542 milliseconds.
Run starting. Expected test count is: 1175
RepairPartitionsSuite:
- don't pull from the first partition
- properly handle pulling from an empty iterator
- gets a single read from the partition if there are no other reads in the pair
- gets all the reads from a pair from the start of a partition
- properly handle dropping from an empty iterator
- don't drop from the first partition
- drop a single read from the partition if there are no other reads in the pair
- drops all the reads from a pair from the start of a partition
- only append to the first partition
- drop a single read from the partition and append read when in the middle
- drop reads from the start and don't append when in the last partition
- can't have more records than number of partitions
- unroll array for broadcast
2020-09-09 11:55:58 WARN  Utils:69 - Your hostname, research-jenkins-worker-07 resolves to a loopback address: 127.0.1.1; using 192.168.10.27 instead (on interface eth0)
2020-09-09 11:55:58 WARN  Utils:69 - Set SPARK_LOCAL_IP if you need to bind to another address
2020-09-09 11:55:58 WARN  NativeCodeLoader:62 - Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
- move pairs around an rdd
FlagStatSuite:
- Standard FlagStat test
ModPartitionerSuite:
- report number of partitions correctly
- partition a number that is lower than the number of partitions and positive
- partition a number that is greater than the number of partitions and positive
- partition a number that is lower than the number of partitions and negative
- partition a number that is greater than the number of partitions and negative
- fire an exception if input is not an integer
TwoBitFileSuite:
- correctly read sequence from .2bit file
- correctly return masked sequences from .2bit file
- correctly return Ns from .2bit file
- correctly calculates sequence dictionary
NonoverlappingRegionsSuite:
- alternating returns an alternating seq of items
- Single region returns itself
- Two adjacent regions will be merged
- Nonoverlapping regions will all be returned
- Many overlapping regions will all be merged
- ADAMRecords return proper references
ReferencePositionSuite:
- create reference position from mapped read
- create reference position from variant
- create reference position from genotype
- create reference position from variant starting at vcf 0
- create reference position from genotype starting at vcf 0
ConsensusGeneratorFromReadsSuite:
- checking search for consensus list for artificial reads
FragmentConverterSuite:
- build a fragment collector and convert to a read
- if a fragment isn't associated with a contig, don't get a fragment collector
- convert an rdd of discontinuous fragments, all from the same contig
- convert an rdd of contiguous fragments, all from the same contig
- convert an rdd of varied fragments from multiple contigs
FileMergerSuite:
- cannot write both empty gzip block and cram eof
- buffer size must be non-negative
RichAlignmentSuite:
- Unclipped Start
- Unclipped End
- tags contains optional fields
- read overlap unmapped read
- read overlap reference position
- read overlap same position different contig
SingleReadBucketSuite:
- convert unmapped pair to fragment
- convert proper pair to fragment
- convert read pair to fragment with first of pair chimeric read
RecalibrationTableSuite:
- look up quality scores in table
FlankSlicesSuite:
- don't put flanks on non-adjacent slices
- put flanks on adjacent slices
InterleavedFastqInputFormatSuite:
- interleaved FASTQ hadoop reader: interleaved_fastq_sample1.ifq->interleaved_fastq_sample1.ifq.output
- interleaved FASTQ hadoop reader: interleaved_fastq_sample2.ifq->interleaved_fastq_sample2.ifq.output
- interleaved FASTQ hadoop reader: interleaved_fastq_sample3.ifq->interleaved_fastq_sample3.ifq.output
- interleaved FASTQ hadoop reader: interleaved_fastq_sample4.ifq->interleaved_fastq_sample4.ifq.output
- interleaved FASTQ hadoop reader: interleaved_fastq_sample5.ifq->interleaved_fastq_sample5.ifq.output
TreeRegionJoinSuite:
- run a join between data on a single contig
ReferenceRegionSuite:
- cannot create an empty predicate
- parse empty string throws IllegalArgumentException
- parse contigName only string into reference regions
- parse to end strings into reference regions
- parse string into reference regions
- contains(: ReferenceRegion)
- contains(: ReferencePosition)
- merge
- overlaps and covers
- overlapsBy and coversBy
- distance(: ReferenceRegion)
- distance(: ReferencePosition)
- unstrandedDistance
- subtract fails on non-overlapping and non-covering regions
- subtract
- create region from unmapped read fails
- create region from read with null alignment positions fails
- create stranded region from unmapped read fails
- create stranded region from read with null alignment positions fails
- create stranded region from read with null alignment strand fails
- create stranded region from read on forward strand
- create stranded region from read on reverse strand
- create region from mapped read contains read start and end
- validate that adjacent regions can be merged
- validate that non-adjacent regions cannot be merged
- validate that nearby regions can be merged
- validate that non-nearby regions cannot be merged
- compute convex hull of two sets
- region name is sanitized when creating region from read
- intersection fails on non-overlapping regions
- intersection fails when minOverlap is not met
- compute intersection
- overlap tests for oriented reference region
- check the width of a reference region
- make a reference region for a variant or genotype
- make a reference region for a variant or genotype starting at VCF 0
- uniformly pad a reference region
- uniformly pad a reference region into negative coordinate space, ensure non negative start
- unevenly pad a reference region
- unevenly pad a reference region into negative coordinate space, ensure non negative start
- can build an open ended reference region
- can build an open ended reference region with strand
- can build a reference region with an open start position
- can build a reference region with an open start position with strand
- can build a reference region that covers the entirety of a contig
- can build a reference region that covers the entirety of a contig with strand
- convert a genotype and then get the reference region
- create region from feature with null alignment positions fails
- create stranded region from feature with null alignment positions fails
- create stranded region from feature with null alignment strand fails
- create stranded region from feature on forward strand
- create stranded region from feature on reverse strand
CoverageDatasetSuite:
- correctly saves coverage
- can read a bed file to coverage
- correctly filters coverage with predicate
- keeps sample metadata
- can read a bed file with multiple samples to coverage
- correctly flatmaps coverage without aggregated bins
- correctly flatmaps coverage with aggregated bins
- collapses coverage records in one partition
- approximately collapses coverage records in multiple partitions
2020-09-09 11:56:15 WARN  DatasetBoundSliceDataset:190 - Saving directly as Parquet from SQL. Options other than compression codec are ignored.
- transform coverage to slice genomic dataset
- transform coverage to feature genomic dataset
2020-09-09 11:56:16 WARN  package:69 - Truncated the string representation of a plan since it was too large. This behavior can be adjusted by setting 'spark.sql.debug.maxToStringFields'.
- transform coverage to fragment genomic dataset
- transform coverage to read genomic dataset
- transform coverage to genotype genomic dataset
- transform coverage to variant genomic dataset
- transform coverage to variant context genomic dataset
- copy coverage rdd
- copy coverage dataset
- copy coverage rdd without sequence dictionary
- copy coverage dataset without sequence dictionary
- transform dataset via java API
RecalibratorSuite:
- don't replace quality if quality was null
- if no covariates, return alignment
- skip recalibration if base is below quality threshold
- recalibrate changed bases above quality threshold
SliceDatasetSuite:
- create a new slice genomic dataset
- create a new slice genomic dataset with sequence dictionary
- merge slices into a sequence genomic dataset
- save as parquet
- round trip as parquet
- save as fasta
- save as single file fasta
- convert slices to reads
- convert slices to sequences
GenotypeDatasetSuite:
- union two genotype genomic datasets together
- round trip to parquet
- round trip to partitioned parquet
- use broadcast join to pull down genotypes mapped to targets
- use right outer broadcast join to pull down genotypes mapped to targets
- use shuffle join to pull down genotypes mapped to targets
- use right outer shuffle join to pull down genotypes mapped to targets
- use left outer shuffle join to pull down genotypes mapped to targets
- use full outer shuffle join to pull down genotypes mapped to targets
- use shuffle join with group by to pull down genotypes mapped to targets
- use right outer shuffle join with group by to pull down genotypes mapped to targets
- convert back to variant contexts
- load parquet to sql, save, re-read from avro
2020-09-09 11:56:33 WARN  DatasetBoundSliceDataset:190 - Saving directly as Parquet from SQL. Options other than compression codec are ignored.
- transform genotypes to slice genomic dataset
- transform genotypes to coverage genomic dataset
- transform genotypes to feature genomic dataset
- transform genotypes to fragment genomic dataset
- transform genotypes to read genomic dataset
- transform genotypes to variant genomic dataset
- transform genotypes to variant context genomic dataset
- loading genotypes then converting to variants yields same output as loading variants
- filter RDD bound genotypes to genotype filters passed
- filter dataset bound genotypes to genotype filters passed
- filter RDD bound genotypes by genotype quality
- filter dataset bound genotypes by genotype quality
- filter RDD bound genotypes by read depth
- filter dataset bound genotypes by read depth
- filter RDD bound genotypes by alternate read depth
- filter dataset bound genotypes by alternate read depth
- filter RDD bound genotypes by reference read depth
- filter dataset bound genotypes by reference read depth
- filter RDD bound genotypes by sample
- filter dataset bound genotypes by sample
- filter RDD bound genotypes by samples
- filter dataset bound genotypes by samples
- filter RDD bound no call genotypes
- filter dataset no call genotypes
- round trip gVCF END attribute without nested variant annotations rdd bound
- round trip gVCF END attribute without nested variant annotations dataset bound
- round trip gVCF END attribute with nested variant annotations rdd bound
- round trip gVCF END attribute with nested variant annotations dataset bound
- transform dataset via java API
FragmentDatasetSuite:
- don't lose any reads when piping interleaved fastq to sam
- don't lose any reads when piping tab5 to sam
- don't lose any reads when piping tab6 to sam
- use broadcast join to pull down fragments mapped to targets
- use right outer broadcast join to pull down fragments mapped to targets
- use shuffle join to pull down fragments mapped to targets
- use right outer shuffle join to pull down fragments mapped to targets
- use left outer shuffle join to pull down fragments mapped to targets
- use full outer shuffle join to pull down fragments mapped to targets
- use shuffle join with group by to pull down fragments mapped to targets
- use right outer shuffle join with group by to pull down fragments mapped to targets
- bin quality scores in fragments
- union two genomic datasets of fragments together
- load parquet to sql, save, re-read from avro
- transform fragments to slice genomic dataset
- transform fragments to coverage genomic dataset
- transform fragments to feature genomic dataset
- transform fragments to read genomic dataset
- transform fragments to genotype genomic dataset
- transform fragments to variant genomic dataset
- transform fragments to variant context genomic dataset
- paired read names with index sequences in read names can group into fragments
- interleaved paired read names with index sequences in read names can group into fragments
- interleaved paired read names with index sequences in read names as fragments
- transform dataset via java API
- dataset and rdd conversion to alignments are equivalent
SingleFastqInputFormatSuite:
- FASTQ hadoop reader: fastq_sample1.fq->single_fastq_sample1.fq.output
- FASTQ hadoop reader: fastq_sample2.fq->single_fastq_sample2.fq.output
- FASTQ hadoop reader: fastq_sample3.fq->single_fastq_sample3.fq.output
- FASTQ hadoop reader: fastq_sample4.fq->single_fastq_sample4.fq.output
VariantContextDatasetSuite:
- load a gvcf with a missing info field set to .
- union two variant context genomic datasets together
- can write, then read in .vcf file
- can write as a single file via simple saveAsVcf method, then read in .vcf file
- can write as a single file via full saveAsVcf method, then read in .vcf file
- transform a vcf file with bad header
- read a vcf file with multi-allelic variants to split
- support VCFs with +Inf/-Inf float values
- support VCFs with `nan` instead of `NaN` float values
- don't lose any variants when piping as VCF
- pipe works with empty partitions
- don't lose any non-default VCF header lines or attributes when piping as VCF
- save a file sorted by contig index
- save a lexicographically sorted file
- save a multiallelic gvcf !!! IGNORED !!!
- test metadata
- save sharded bgzip vcf
- save bgzip vcf as single file
- can't save file with non-vcf extension
- transform variant contexts to slice genomic dataset
- transform variant contexts to coverage genomic dataset
- transform variant contexts to feature genomic dataset
- transform variant contexts to fragment genomic dataset
- transform variant contexts to read genomic dataset
- transform variant contexts to genotype genomic dataset
- transform variant contexts to variant genomic dataset
- save and reload from partitioned parquet
- transform dataset via java API
ConsensusSuite:
- test the insertion of a consensus insertion into a reference
- test the insertion of a consensus deletion into a reference
- inserting empty consensus returns the reference
SequenceDatasetSuite:
- create a new sequence genomic dataset
- create a new sequence genomic dataset with sequence dictionary
- save as parquet
- round trip as parquet
- save as fasta
- save as single file fasta
- convert sequences to reads
- convert sequences to slices
- slice sequences to a maximum length
- slice sequences shorter than maximum length
- filter sequences by overlapping region
- filter sequences failing to overlap region
- filter sequences by overlapping regions
- filter sequences failing to overlap regions
- slice sequences overlapping a smaller region
- slice sequences overlapping a larger region
- slice sequences failing to overlap a region
- slice sequences overlapping smaller regions
- slice sequences overlapping larger regions
- slice sequences failing to overlap regions
AttributeUtilsSuite:
- parseTags returns a reasonable set of tagStrings
- parseTags works with NumericSequence tagType
- empty string is parsed as zero tagStrings
- incorrectly formatted tag throws an exception
- string tag with a ':' in it is correctly parsed
- oq string tag with many ':' in it is correctly parsed
- oq string tag with a ',' in it is correctly parsed
- if a tag is an array but doesn't define it's format, throw
MarkDuplicatesSuite:
- single read
- reads at different positions
- reads at the same position
- reads at the same position with clipping
- reads on reverse strand
- unmapped reads
- read pairs
- read pairs with fragments
- quality scores
- read pairs that cross chromosomes
- single fragment
- fragments at different positions
- fragments at the same position
- fragments at the same position with clipping
- fragments on reverse strand
- unmapped fragments
- read pairs as fragments
- read pairs with fragments as fragments
- chimeric fragments
- inverse pairs
- supplemental reads
TranscriptEffectConverterSuite:
- parse empty transcript effect
- parse empty transcript effect strict validation stringency
- parse invalid transcript effect
- parse invalid transcript effect strict validation stringency
- parse transcript effect
- parse empty list VCF ANN attribute
- parse empty list VCF ANN attribute strict validation stringency
- parse empty string VCF ANN attribute
- parse empty string VCF ANN attribute strict validation stringency
- parse invalid VCF ANN attribute
- parse invalid VCF ANN attribute strict validation stringency
- parse VCF ANN attribute with one transcript effect
- parse VCF ANN attribute with multiple transcript effects
- convert to transcript effect from null VCF ANN attribute in variant context
- convert to transcript effect from empty list VCF ANN attribute in variant context
- convert to transcript effect from empty list VCF ANN attribute in variant context strict validation stringency
- convert to transcript effect from empty string VCF ANN attribute in variant context
- convert to transcript effect from empty string VCF ANN attribute in variant context strict validation stringency
- convert to transcript effect from invalid VCF ANN attribute in variant context
- convert to transcript effect from invalid VCF ANN attribute in variant context strict validation stringency
2020-09-09 11:57:21 WARN  TranscriptEffectConverter$:190 - Could not convert VCF INFO reserved key ANN value to TranscriptEffect, caught java.lang.NumberFormatException: For input string: "not a number".
- convert to transcript effect from VCF ANN attribute with invalid number in variant context lenient validation stringency
2020-09-09 11:57:21 WARN  TranscriptEffectConverter$:190 - Could not convert VCF INFO reserved key ANN value to TranscriptEffect, caught java.lang.NumberFormatException: For input string: "not a number".
- convert to transcript effect from VCF ANN attribute with invalid fraction in variant context lenient validation stringency
- convert to transcript effect from VCF ANN attribute with invalid number in variant context strict validation stringency
- convert to transcript effect from VCF ANN attribute with invalid fraction in variant context strict validation stringency
- convert to transcript effect from VCF ANN attribute in variant context different alt allele
- convert to transcript effect from VCF ANN attribute in variant context same alt allele
- convert to transcript effect from VCF ANN attribute in variant context multiple effects same alt allele
- convert transcript effect to VCF ANN attribute value
- convert transcript effect with null fields to VCF ANN attribute value
2020-09-09 11:57:21 WARN  TranscriptEffectConverter$:190 - Incorrect fractional value ?/2, missing numerator
- convert transcript effect with incorrect fractional value to VCF ANN attribute value
IndelRealignmentTargetSuite:
- checking simple realignment target
- creating simple target from read with deletion
- creating simple target from read with insertion
- joining simple realignment targets on same chr
- joining simple realignment targets on different chr throws exception
- creating targets from three intersecting reads, same indel
- creating targets from three intersecting reads, two different indel
- creating targets from two disjoint reads
- creating targets for artificial reads: one-by-one
- creating targets for artificial reads: all-at-once (merged)
- creating indel targets for mason reads
- additional indel targets taken from consensus generator
NormalizationUtilsSuite:
- cannot move an indel left if there are no bases to it's left
- move a simple indel to farthest position left until bases run out
- move a simple indel to farthest position left, past length of indel
- cannot move a left normalized indel in a short tandem repeat
- move an indel in a short tandem repeat
- move an indel in a short tandem repeat of more than 2 bases, where shift is not an integer multiple of repeated sequence length
- moving a simple read with single deletion that cannot shift
- shift an indel left by 0 in a cigar
- shift an indel left by 1 in a cigar
- do not left align a complex read which is already left aligned
ReadGroupDictionarySuite:
- simple conversion to and from sam read group
- sample name must be set
- simple equality checks
- get samples from read group dictionary
- empty read group is empty
- merging a dictionary with itself should work
- round trip a record with all attributes set
RightOuterTreeRegionJoinSuite:
- Ensure same reference regions get passed together
- Overlapping reference regions
InnerShuffleRegionJoinSuite:
- Overlapping reference regions
- Multiple reference regions do not throw exception
FeatureDatasetSuite:
- round trip GTF format
- save GTF as GFF3 format
- save GTF as BED format
- save GTF as IntervalList format
- save GTF as NarrowPeak format
- save GFF3 as GTF format
- save GFF3 as BED format
- save GFF3 as IntervalList format
- save GFF3 as NarrowPeak format
- round trip GFF3 format
- ignore FASTA sequence in GFF3 file
- save BED as GTF format
- save BED as GFF3 format
- save BED as IntervalList format
- save BED as NarrowPeak format
- round trip BED6 format
- keeps sample metadata
- round trip BED12 format
- save to UCSC BED format
- save IntervalList as GTF format
- save IntervalList as GFF3 format
- save IntervalList as BED format
- save IntervalList as IntervalList format
- save IntervalList as NarrowPeak format
- round trip IntervalList format
- save NarrowPeak as GTF format
- save NarrowPeak as GFF3 format
- save NarrowPeak as BED format
- save NarrowPeak as IntervalList format
- save NarrowPeak as NarrowPeak format
- round trip NarrowPeak format
- sort by reference
- sort by reference and feature fields
- sort gene features by reference and gene structure
- sort transcript features by reference and gene structure
- sort exon features by reference and gene structure
- sort intron features by reference and gene structure
- correctly flatmaps CoverageDataset from FeatureDataset
- use broadcast join to pull down features mapped to targets
- use right outer broadcast join to pull down features mapped to targets
- use shuffle join to pull down features mapped to targets
- use right outer shuffle join to pull down features mapped to targets
- use left outer shuffle join to pull down features mapped to targets
- use full outer shuffle join to pull down features mapped to targets
- use shuffle join with group by to pull down features mapped to targets
- use right outer shuffle join with group by to pull down features mapped to targets
- union two feature rdds together
- obtain sequence dictionary contig lengths from header in IntervalList format
- don't lose any features when piping as BED format
- don't lose any features when piping as GTF format
- don't lose any features when piping as GFF3 format
- don't lose any features when piping as NarrowPeak format
- load parquet to sql, save, re-read from avro
- load partitioned parquet to sql, save, re-read from avro
2020-09-09 11:57:41 WARN  DatasetBoundSliceDataset:190 - Saving directly as Parquet from SQL. Options other than compression codec are ignored.
- transform features to slice genomic dataset
- transform features to coverage genomic dataset
- transform features to fragment genomic dataset
- transform features to read genomic dataset
- transform features to genotype genomic dataset
- transform features to variant genomic dataset
- transform features to variant context genomic dataset
- filter RDD bound features by feature type
- filter dataset bound features by feature type
- filter RDD bound features by feature types
- filter dataset bound features by feature types
- filter RDD bound features by gene
- filter dataset bound features by gene
- filter RDD bound features by genes
- filter dataset bound features by genes
- filter RDD bound features by transcript
- filter dataset bound features by transcript
- filter RDD bound features by transcripts
- filter dataset bound features by transcripts
- filter RDD bound features by exon
- filter dataset bound features by exon
- filter RDD bound features by exons
- filter dataset bound features by exons
- filter RDD bound features by score
- filter dataset bound features by score
- filter RDD bound features by parent
- filter dataset bound features by parent
- filter RDD bound features by parents
- filter dataset bound features by parents
- filter RDD bound features by attribute
- filter dataset bound features by attribute
- transform dataset via java API
AlphabetSuite:
- test size of a case-sensitive alphabet
- test apply of a case-sensitive alphabet
- test reverse complement of a case-sensitive alphabet
- test exact reverse complement of a case-sensitive alphabet
- test size of a case-insensitive alphabet
- test apply of a case-insensitive alphabet
- test reverse complement of a case-insensitive alphabet
- test exact reverse complement of a case-insensitive alphabet
- DNA alphabet
- map unknown bases to N
SortedGenomicDatasetSuite:
- testing that partition and sort provide correct outputs
- testing copartition maintains or adds sort
- testing that we don't drop any data on the right side even though it doesn't map to a partition on the left
- testing that sorted shuffleRegionJoin matches unsorted
- testing that sorted fullOuterShuffleRegionJoin matches unsorted
- testing that sorted rightOuterShuffleRegionJoin matches unsorted
- testing that sorted leftOuterShuffleRegionJoin matches unsorted
- testing that we can persist the sorted knowledge
VariantContextConverterSuite:
- Convert htsjdk site-only SNV to ADAM
- Convert somatic htsjdk site-only SNV to ADAM
- Convert htsjdk site-only CNV to ADAM
- Convert htsjdk SNV w/ genotypes w/ phase information to ADAM
- Convert htsjdk SNV with different variant filters to ADAM
- Convert htsjdk SNV with different genotype filters to ADAM
- Convert ADAM site-only SNV to htsjdk
- Convert ADAM SNV w/ genotypes to htsjdk
- Convert ADAM SNV w/ genotypes but bad SB to htsjdk with strict validation
2020-09-09 11:57:55 WARN  VariantContextConverter:190 - Applying annotation extraction function org.bdgenomics.adam.converters.VariantContextConverter$$Lambda$694/573926093@71b441c6 to {"variant": {"referenceName": "1", "start": 0, "end": 1, "names": [], "splitFromMultiAllelic": false, "referenceAllele": "A", "alternateAllele": "T", "quality": null, "filtersApplied": null, "filtersPassed": null, "filtersFailed": [], "annotation": null}, "referenceName": null, "start": null, "end": null, "variantCallingAnnotations": {"filtersApplied": null, "filtersPassed": null, "filtersFailed": [], "downsampled": null, "baseQRankSum": null, "fisherStrandBiasPValue": 3.0, "rmsMapQ": 0.0, "mapq0Reads": 5, "mqRankSum": null, "readPositionRankSum": null, "genotypePriors": [], "genotypePosteriors": [], "vqslod": null, "culprit": null, "attributes": {}}, "sampleId": "NA12878", "sampleDescription": null, "processingDescription": null, "alleles": ["REF", "ALT"], "expectedAlleleDosage": null, "referenceReadDepth": null, "alternateReadDepth": null, "readDepth": null, "minReadDepth": null, "genotypeQuality": null, "genotypeLikelihoods": [], "nonReferenceLikelihoods": [], "strandBiasComponents": [0, 2], "splitFromMultiAllelic": false, "phased": false, "phaseSetId": null, "phaseQuality": null} failed with java.lang.IllegalArgumentException: requirement failed: Illegal strand bias components length. Must be empty or 4. In:
- Convert ADAM SNV w/ genotypes but bad SB to htsjdk with lenient validation
{"variant": {"referenceName": "1", "start": 0, "end": 1, "names": [], "splitFromMultiAllelic": false, "referenceAllele": "A", "alternateAllele": "T", "quality": null, "filtersApplied": null, "filtersPassed": null, "filtersFailed": [], "annotation": null}, "referenceName": null, "start": null, "end": null, "variantCallingAnnotations": {"filtersApplied": null, "filtersPassed": null, "filtersFailed": [], "downsampled": null, "baseQRankSum": null, "fisherStrandBiasPValue": 3.0, "rmsMapQ": 0.0, "mapq0Reads": 5, "mqRankSum": null, "readPositionRankSum": null, "genotypePriors": [], "genotypePosteriors": [], "vqslod": null, "culprit": null, "attributes": {}}, "sampleId": "NA12878", "sampleDescription": null, "processingDescription": null, "alleles": ["REF", "ALT"], "expectedAlleleDosage": null, "referenceReadDepth": null, "alternateReadDepth": null, "readDepth": null, "minReadDepth": null, "genotypeQuality": null, "genotypeLikelihoods": [], "nonReferenceLikelihoods": [], "strandBiasComponents": [0, 2], "splitFromMultiAllelic": false, "phased": false, "phaseSetId": null, "phaseQuality": null}.
- Convert htsjdk multi-allelic sites-only SNVs to ADAM
- Convert htsjdk multi-allelic SNVs to ADAM and back to htsjdk
- Convert gVCF reference records to ADAM
- Convert htsjdk variant context with no IDs to ADAM
- Convert htsjdk variant context with one ID to ADAM
- Convert htsjdk variant context with multiple IDs to ADAM
- Convert ADAM variant context with no names to htsjdk
- Convert ADAM variant context with one name to htsjdk
- Convert ADAM variant context with multiple names to htsjdk
- Convert ADAM variant context with null filters applied to htsjdk
- Convert ADAM variant context with no filters applied to htsjdk
- Convert ADAM variant context with passing filters to htsjdk
- Convert ADAM variant context with failing filters to htsjdk
- no phasing set going htsjdk->adam
- phased but no phase set info going htsjdk->adam
- set phase set and extract going htsjdk->adam
- no allelic depth going htsjdk->adam
- set allelic depth going htsjdk->adam
- no gt read depth going htsjdk->adam
- extract gt read depth going htsjdk->adam
- no min gt read depth going htsjdk->adam
- extract min gt read depth going htsjdk->adam
- no genotype quality going htsjdk->adam
- extract genotype quality going htsjdk->adam
- no phred likelihood going htsjdk->adam
- extract phred likelihoods going htsjdk->adam
- no strand bias info going htsjdk->adam
- extract strand bias info going htsjdk->adam
- no filters going htsjdk->adam
- filters passed going htsjdk->adam
- extract single filter going htsjdk->adam
- extract multiple filters going htsjdk->adam
- no fisher strand bias going htsjdk->adam
- extract fisher strand bias going htsjdk->adam
- no rms mapping quality going htsjdk->adam
- extract rms mapping quality going htsjdk->adam
- no mq0 going htsjdk->adam
- extract mq0 going htsjdk->adam
- no gt read depth going adam->htsjdk
- extract gt read depth going adam->htsjdk
- throw iae if missing one component of gt read depth going adam->htsjdk
- no depth going adam->htsjdk
- extract depth going adam->htsjdk
- no min depth going adam->htsjdk
- extract min depth going adam->htsjdk
- no quality going adam->htsjdk
- extract quality going adam->htsjdk
- no genotype likelihoods going adam->htsjdk
- extract genotype likelihoods going adam->htsjdk
- no strand bias going adam->htsjdk
- malformed strand bias going adam->htsjdk
- extract strand bias going adam->htsjdk
- no phasing info going adam->htsjdk
- unphased going adam->htsjdk
- phased but no ps/pq going adam->htsjdk
- phased but no pq going adam->htsjdk
- phased but no ps going adam->htsjdk
- phased going adam->htsjdk
- no filter info going adam->htsjdk
- if filters applied, must set passed/failed going adam->htsjdk
- filters passed going adam->htsjdk
- if filters failed, must set filters failed going adam->htsjdk
- single filter failed going adam->htsjdk
- multiple filters failed going adam->htsjdk
- no fisher strand bias going adam->htsjdk
- extract fisher strand bias going adam->htsjdk
- no rms mapping quality going adam->htsjdk
- extract rms mapping quality going adam->htsjdk
- no mapping quality 0 reads going adam->htsjdk
- extract mapping quality 0 reads going adam->htsjdk
- no names set going htsjdk->adam
- single name set going htsjdk->adam
- multiple names set going htsjdk->adam
- no quality going htsjdk->adam
- quality set going htsjdk->adam
- no filters applied going htsjdk->adam
- filters applied and passed going htsjdk->adam
- single filter applied and failed going htsjdk->adam
- multiple filters applied and failed going htsjdk->adam
- no names set adam->htsjdk
- set a single name adam->htsjdk
- set multiple names adam->htsjdk
- no qual set adam->htsjdk
- qual is set adam->htsjdk
- no filters applied adam->htsjdk
- null filters applied adam->htsjdk
- filters passed adam->htsjdk
- if filter failed, must have filters adam->htsjdk
- single filter failed adam->htsjdk
- multiple filters failed adam->htsjdk
- no ancestral allele set going htsjdk->adam
- ancestral allele set going htsjdk->adam
- no dbsnp membership set going htsjdk->adam
- dbsnp membership set going htsjdk->adam
- no hapmap2 membership set going htsjdk->adam
- hapmap2 membership set going htsjdk->adam
- no hapmap3 membership set going htsjdk->adam
- hapmap3 membership set going htsjdk->adam
- no validated set going htsjdk->adam
- validated set going htsjdk->adam
- no 1000G membership set going htsjdk->adam
- 1000G membership set going htsjdk->adam
- not somatic going htsjdk->adam
- somatic going htsjdk->adam
- no allele count going htsjdk->adam
- single allele count going htsjdk->adam
- multiple allele counts going htsjdk->adam
- no allele frequency going htsjdk->adam
- single allele frequency going htsjdk->adam
- single allele frequency is +Inf going htsjdk->adam
- single allele frequency is -Inf going htsjdk->adam
- multiple allele frequencies going htsjdk->adam
- no CIGAR going htsjdk->adam
- single CIGAR going htsjdk->adam
- multiple CIGARs going htsjdk->adam
- no read depth going htsjdk->adam
- single read depth going htsjdk->adam
- multiple read depths going htsjdk->adam
- no forward read depth going htsjdk->adam
- single forward read depth going htsjdk->adam
- multiple forward read depths going htsjdk->adam
- no reverse read depth going htsjdk->adam
- single reverse read depth going htsjdk->adam
- multiple reverse read depths going htsjdk->adam
- no ancestral allele set adam->htsjdk
- ancestral allele set adam->htsjdk
- no dbsnp membership set adam->htsjdk
- dbsnp membership set adam->htsjdk
- no hapmap2 membership set adam->htsjdk
- hapmap2 membership set adam->htsjdk
- no hapmap3 membership set adam->htsjdk
- hapmap3 membership set adam->htsjdk
- no validated set adam->htsjdk
- validated set adam->htsjdk
- no 1000G membership set adam->htsjdk
- 1000G membership set adam->htsjdk
- no allele count set adam->htsjdk
- allele count set adam->htsjdk
- no allele frequency set adam->htsjdk
- allele frequency set adam->htsjdk
- no cigar set adam->htsjdk
- cigar set adam->htsjdk
- no read depth set adam->htsjdk
- read depth set adam->htsjdk
- read depth without reference read depth
- reference read depth without read depth
- no forward read depth set adam->htsjdk
- forward read depth set adam->htsjdk
- reference forward read depth without forward read depth
- forward read depth without reference forward read depth
- no reverse read depth set adam->htsjdk
- reverse read depth set adam->htsjdk
- reference reverse read depth without reverse read depth
- reverse read depth without reference reverse read depth
- VCF INFO attribute Number=0 Type=Flag adam->htsjdk
- VCF INFO attribute Number=4 Type=Flag adam->htsjdk unsupported, strict !!! IGNORED !!!
- VCF INFO attribute Number=1 Type=Integer adam->htsjdk
- VCF INFO attribute Number=4 Type=Integer adam->htsjdk
- VCF INFO attribute Number=A Type=Integer adam->htsjdk
- VCF INFO attribute Number=R Type=Integer adam->htsjdk
- VCF INFO attribute Number=R Type=String adam->htsjdk
- VCF INFO attribute Number=G Type=String adam->htsjdk not supported
- VCF INFO attribute Number=0 Type=Flag htsjdk->adam
- VCF INFO attribute Number=1 Type=Integer htsjdk->adam
- VCF INFO attribute Number=4 Type=Integer htsjdk->adam
- VCF INFO attribute Number=4 Type=Float htsjdk->adam
- VCF INFO attribute Number=A Type=Integer htsjdk->adam
- VCF INFO attribute Number=R Type=Integer htsjdk->adam
- VCF INFO attribute Number=R Type=String htsjdk->adam
- VCF INFO attribute Number=G Type=String htsjdk->adam not supported
- VCF FORMAT attribute Number=0 Type=Flag adam->htsjdk not supported
- VCF FORMAT attribute Number=1 Type=Integer adam->htsjdk
- VCF FORMAT attribute Number=4 Type=Integer adam->htsjdk
- VCF FORMAT attribute Number=A Type=Integer adam->htsjdk
- VCF FORMAT attribute Number=R Type=Integer adam->htsjdk
- VCF FORMAT attribute Number=R Type=String adam->htsjdk
- VCF FORMAT attribute Number=0 Type=Flag htsjdk->adam is not supported
- VCF FORMAT attribute Number=1 Type=Integer htsjdk->adam
- VCF FORMAT attribute Number=4 Type=Integer htsjdk->adam
- VCF FORMAT attribute Number=4 Type=Float htsjdk->adam
- VCF FORMAT attribute Number=A Type=Integer htsjdk->adam
- VCF FORMAT attribute Number=R Type=Integer htsjdk->adam
- VCF FORMAT attribute Number=R Type=String htsjdk->adam
- VCF FORMAT attribute Number=G Type=String htsjdk->adam
- respect end position for symbolic alts
FastqRecordConverterSuite:
- test read name suffix and index of pair must match
- test parseReadInFastq, read suffix removal
- test parseReadInFastq, read metadata removal
- test parseReadInFastq, read quality shorter than read length, padded with B
- test parseReadInFastq, read quality longer than read length 
- test parseReadInFastq, no read quality
- testing FastqRecordConverter.convertPair with valid input
- testing FastqRecordConverter.convertPair with 7-line invalid input
- testing FastqRecordConverter.convertPair with invalid input: first read length and qual don't match
- testing FastqRecordConverter.convertPair with invalid input: second read length and qual don't match
- testing FastqRecordConverter.convertFragment with valid input
- testing FastqRecordConverter.convertFragment with another valid input having /1, /2 suffixes
- testing FastqRecordConverter.convertFragment with invalid input: different read names
- testing FastqRecordConverter.convertRead with valid input
- testing FastqRecordConverter.convertRead with valid input: setFirstOfPair set to true
- testing FastqRecordConverter.convertRead with valid input: setSecondOfPair set to true
- testing FastqRecordConverter.convertRead with valid input: setFirstOfPair and setSecondOfPair both true
- testing FastqRecordConverter.convertRead with valid input, no qual, strict
- testing FastqRecordConverter.convertRead with valid input, no qual, not strict
AttributeSuite:
- test SAMTagAndValue parsing
- Attributes can be correctly re-encoded as text SAM tags
GFF3HeaderWriterSuite:
- write gff3 header pragma
BinQualitiesSuite:
- make a quality score bin
- can't have a quality score bin with negative score
- can't have a quality score bin with high score below low
- can't have a quality score bin with high score above 255
- can't have a quality score bin with score outside
- make a quality score bin from a string
- quality score bin must have exactly 3 elements
- quality score bin must be integers
- must define at least one bin
- build multiple bins
- rewrite quality scores for a read
- rewriting quality scores fails if bins overlap
- rewriting quality scores fails if base is out of bounds
- skip read if qualities are null
- rewrite a read
IndexedFastaFileSuite:
- correctly generates sequence dictionary from .dict file
- correctly gets sequence
- fails when fai index is not provided
2020-09-09 11:57:55 WARN  IndexedFastaFile:190 - Caught exception java.lang.NullPointerException when loading FASTA sequence dictionary. Using empty dictionary instead.
- passes when dict is not provided and ValidationStringency = LENIENT
SAMRecordConverterSuite:
- testing the fields in an Alignment obtained from a mapped samRecord conversion
- testing the fields in an Alignment obtained from an unmapped samRecord conversion
- '*' quality gets nulled out
- don't keep denormalized fields
ADAMContextSuite:
- ctr is accessible
- load from an empty directory
- sc.loadParquet should not fail on unmapped reads
- sc.loadParquet should not load a file without a type specified
- can read a small .SAM file
- can read a small .SAM file with a bad header with lenient validation
- loading a sam file with a bad header and strict stringency should fail
- can read a small .CRAM file
- can read a small .SAM with all attribute tag types
- can filter a .SAM file based on quality
- Can convert to phred
- Can convert from phred
- Can read a .gtf file
- Can read a .bed file
- Can read a BED 12 file
- Can read a .narrowPeak file
- Can read a .interval_list file
2020-09-09 11:57:58 WARN  VariantContextConverter:190 - Saw invalid info field java.lang.IllegalArgumentException: Multivalued flags are not supported for INFO lines: INFO=<ID=ABADFLAG,Number=.,Type=Flag,Description="A no good, very bad flag.">. Ignoring...
2020-09-09 11:57:58 WARN  VariantContextConverter:190 - Generating field extractor from header line INFO=<ID=ABADFLAG,Number=.,Type=Flag,Description="A no good, very bad flag."> failed: java.lang.IllegalArgumentException: Multivalue flags are not supported for INFO lines: INFO=<ID=ABADFLAG,Number=.,Type=Flag,Description="A no good, very bad flag.">
- can read a small .vcf file with a validation issue
- can read a small .vcf file
2020-09-09 11:57:59 WARN  VCFInputFormat:218 - file:/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/2.12.8/test-classes/test.vcf.gz is not splittable, consider using block-compressed gzip (BGZF)
- can read a gzipped .vcf file
- can read a vcf file with an empty alt
- can read a BGZF gzipped .vcf file with .gz file extension
- can read a BGZF gzipped .vcf file with .bgz file extension
- can read a vcf file with a projection
- can read an uncompressed BCFv2.2 file !!! IGNORED !!!
- can read a BGZF compressed BCFv2.2 file !!! IGNORED !!!
- loadIndexedVcf with 1 ReferenceRegion
- loadIndexedVcf with multiple ReferenceRegions
- load block compressed interleaved fastq
- import records from interleaved FASTQ: 1
- import records from interleaved FASTQ: 2
- import records from interleaved FASTQ: 3
- import records from interleaved FASTQ: 4
- import block compressed single fastq
- import records from single ended FASTQ: 1
- import records from single ended FASTQ: 2
- import records from single ended FASTQ: 3
- import records from single ended FASTQ: 4
- filter on load using the filter2 API
- saveAsParquet with file path
- saveAsParquet with file path, block size, page size
- saveAsParquet with save args
- read a HLA fasta from GRCh38
- read a gzipped fasta file
- read a fasta file with comments, gaps, and translation stops
- loadIndexedBam with 1 ReferenceRegion
- loadIndexedBam with multiple ReferenceRegions
- loadIndexedBam with multiple ReferenceRegions and indexed bams
- loadIndexedBam with multiple ReferenceRegions and a directory of indexed bams
- loadIndexedBam should throw exception without an index file
- loadIndexedBam should work with indexed file with index naming format <filename>.bai
- loadIndexedBam glob should throw exception without an index file
- loadBam with a glob
- loadBam with a directory
- load vcf with a glob
- load vcf from a directory
- load gvcf which contains a multi-allelic row from a directory
- load and save gvcf which contains rows without likelihoods
- parse annotations for multi-allelic rows
- load parquet with globs
- bad glob should fail
- empty directory should fail
- can read a SnpEff-annotated .vcf file
- loadAlignments should not fail on single-end and paired-end fastq reads
- load queryname sorted sam as fragments
- load query grouped sam as fragments
- load paired fastq
- load paired fastq without cache
- load paired fastq as fragments
- load paired fastq as fragments without cache
- load HTSJDK sequence dictionary
- load Bedtools .genome file as sequence dictionary
- load Bedtools .genome.txt file as sequence dictionary
- load UCSC Genome Browser chromInfo.txt file as sequence dictionary
- load unrecognized file extension as sequence dictionary fails
- load BED features with Bedtools .genome file as sequence dictionary
- load BED features with Bedtools .genome file as sequence dictionary, no matching features
- convert program record
- load program record from sam file
- load alignments from data frame
- load features from data frame
- load fragments from data frame
- load genotypes from data frame with default header lines
- load genotypes from data frame with empty header lines
- load reads from data frame
- load sequences from data frame
- load slices from data frame
- load variant contexts from data frame with default header lines
- load variant contexts from data frame with empty header lines
- load variants from data frame with default header lines
- load variants from data frame with empty header lines
- load alignments with metadata from data frame
- load features with metadata from data frame
- load fragments with metadata from data frame
- load genotypes with metadata from data frame
- load variant contexts with metadata from data frame
- load variants with metadata from data frame
- read a fasta file with short sequences as sequences
- read a fasta file with long sequences as sequences
- read a fasta file with short sequences as slices
- read a fasta file with long sequences as slices
CycleCovariateSuite:
- compute covariates for an unpaired read on the negative strand
- compute covariates for a first-of-pair read on the negative strand
- compute covariates for a second-of-pair read on the negative strand
- compute covariates for an unpaired read on the positive strand
- compute covariates for a first-of-pair read on the positive strand
- compute covariates for a second-of-pair read on the positive strand
AlignmentConverterSuite:
- testing the fields in a converted ADAM Read
- converting a read with null quality is OK
- convert a read to fastq
- reverse complement reads when converting to fastq
- converting to fastq with unmapped reads where  read reverse complemented flag (Ox10) was NOT set
- converting to fastq with unmapped reads where reverse complemented flag (0x10) was set
- converting a fragment with no alignments should yield unaligned reads
- converting a fragment with alignments should restore the alignments
- read negative strand is propagated even when not mapped
ConsensusGeneratorFromKnownsSuite:
- no consensuses for empty target
- no consensuses for reads that don't overlap a target
- return a consensus for read overlapping a single target
RichCigarSuite:
- moving 2 bp from a deletion to a match operator
- moving 2 bp from a insertion to a match operator
- moving 1 base in a two element cigar
- move to start of read
- process right clipped cigar
- process left clipped cigar
- process cigar clipped on both ends
MDTaggingSuite:
- test adding MDTags over boundary
- test adding MDTags; reads span full contig
- test adding MDTags; reads start inside first fragment
- test adding MDTags; reads end inside last fragment
- test adding MDTags; reads start inside first fragment and end inside last fragment
- test adding MDTags; reads start and end in middle fragements
2020-09-09 11:59:08 WARN  BlockManager:69 - Putting block rdd_5_3 failed due to exception java.lang.Exception: Contig chr2 not found in reference map with keys: chr1.
2020-09-09 11:59:08 WARN  BlockManager:69 - Block rdd_5_3 could not be removed as it was not found on disk or in memory
2020-09-09 11:59:08 ERROR Executor:94 - Exception in task 3.0 in stage 2.0 (TID 11)
java.lang.Exception: Contig chr2 not found in reference map with keys: chr1
	at org.bdgenomics.adam.util.ReferenceContigMap.$anonfun$extract$1(ReferenceContigMap.scala:64)
	at scala.collection.immutable.Map$Map1.getOrElse(Map.scala:119)
	at org.bdgenomics.adam.util.ReferenceContigMap.extract(ReferenceContigMap.scala:63)
	at org.bdgenomics.adam.rdd.read.MDTagging.$anonfun$addMDTagsBroadcast$3(MDTagging.scala:76)
	at scala.Option$WithFilter.map(Option.scala:163)
	at org.bdgenomics.adam.rdd.read.MDTagging.$anonfun$addMDTagsBroadcast$1(MDTagging.scala:71)
	at scala.collection.Iterator$$anon$10.next(Iterator.scala:459)
	at org.apache.spark.storage.memory.MemoryStore.putIterator(MemoryStore.scala:222)
	at org.apache.spark.storage.memory.MemoryStore.putIteratorAsValues(MemoryStore.scala:299)
	at org.apache.spark.storage.BlockManager.$anonfun$doPutIterator$1(BlockManager.scala:1371)
	at org.apache.spark.storage.BlockManager.org$apache$spark$storage$BlockManager$$doPut(BlockManager.scala:1298)
	at org.apache.spark.storage.BlockManager.doPutIterator(BlockManager.scala:1362)
	at org.apache.spark.storage.BlockManager.getOrElseUpdate(BlockManager.scala:1186)
	at org.apache.spark.rdd.RDD.getOrCompute(RDD.scala:360)
	at org.apache.spark.rdd.RDD.iterator(RDD.scala:311)
	at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90)
	at org.apache.spark.scheduler.Task.run(Task.scala:127)
	at org.apache.spark.executor.Executor$TaskRunner.$anonfun$run$3(Executor.scala:446)
	at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1377)
	at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:449)
	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
	at java.lang.Thread.run(Thread.java:748)
2020-09-09 11:59:08 WARN  TaskSetManager:69 - Lost task 3.0 in stage 2.0 (TID 11, 192.168.10.27, executor driver): java.lang.Exception: Contig chr2 not found in reference map with keys: chr1
	at org.bdgenomics.adam.util.ReferenceContigMap.$anonfun$extract$1(ReferenceContigMap.scala:64)
	at scala.collection.immutable.Map$Map1.getOrElse(Map.scala:119)
	at org.bdgenomics.adam.util.ReferenceContigMap.extract(ReferenceContigMap.scala:63)
	at org.bdgenomics.adam.rdd.read.MDTagging.$anonfun$addMDTagsBroadcast$3(MDTagging.scala:76)
	at scala.Option$WithFilter.map(Option.scala:163)
	at org.bdgenomics.adam.rdd.read.MDTagging.$anonfun$addMDTagsBroadcast$1(MDTagging.scala:71)
	at scala.collection.Iterator$$anon$10.next(Iterator.scala:459)
	at org.apache.spark.storage.memory.MemoryStore.putIterator(MemoryStore.scala:222)
	at org.apache.spark.storage.memory.MemoryStore.putIteratorAsValues(MemoryStore.scala:299)
	at org.apache.spark.storage.BlockManager.$anonfun$doPutIterator$1(BlockManager.scala:1371)
	at org.apache.spark.storage.BlockManager.org$apache$spark$storage$BlockManager$$doPut(BlockManager.scala:1298)
	at org.apache.spark.storage.BlockManager.doPutIterator(BlockManager.scala:1362)
	at org.apache.spark.storage.BlockManager.getOrElseUpdate(BlockManager.scala:1186)
	at org.apache.spark.rdd.RDD.getOrCompute(RDD.scala:360)
	at org.apache.spark.rdd.RDD.iterator(RDD.scala:311)
	at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90)
	at org.apache.spark.scheduler.Task.run(Task.scala:127)
	at org.apache.spark.executor.Executor$TaskRunner.$anonfun$run$3(Executor.scala:446)
	at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1377)
	at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:449)
	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
	at java.lang.Thread.run(Thread.java:748)

2020-09-09 11:59:08 ERROR TaskSetManager:73 - Task 3 in stage 2.0 failed 1 times; aborting job
- try realigning a read on a missing contig, stringency == STRICT
2020-09-09 11:59:08 WARN  MDTagging:190 - Caught exception when processing read chr2: java.lang.Exception: Contig chr2 not found in reference map with keys: chr1
- try realigning a read on a missing contig, stringency == LENIENT
FileExtensionsSuite:
- ends in gzip extension
- is a vcf extension
PhredUtilsSuite:
- convert low phred score to log and back
- convert high phred score to log and back
- convert overflowing phred score to log and back and clip
- convert negative zero log probability to phred and clip
- round trip log probabilities
ReadDatasetSuite:
- create a new read genomic dataset
- create a new read genomic dataset with sequence dictionary
- save as parquet
- round trip as parquet
- save as fastq
- save as single file fastq
- filter read genomic dataset by reference region
- broadcast region join reads and features
- shuffle region join reads and features
- convert reads to alignments
- convert reads to sequences
- convert reads to slices
AlignmentDatasetSuite:
- sorting reads
- unmapped reads go at the end when sorting
- coverage does not fail on unmapped reads
- computes coverage
- computes coverage with multiple samples
- merges adjacent records with equal coverage values
- sorting reads by reference index
- round trip from ADAM to SAM and back to ADAM produces equivalent Read values
- round trip with single CRAM file produces equivalent Read values
- round trip with sharded CRAM file produces equivalent Read values
- SAM conversion sets read mapped flag properly
- load long FASTQ reads
- load FASTQ with no bases
- convert malformed FASTQ (no quality scores) => SAM => well-formed FASTQ => SAM
- round trip from ADAM to FASTQ and back to ADAM produces equivalent Read values
- round trip from ADAM to paired-FASTQ and back to ADAM produces equivalent Read values
- writing a small file with tags should produce the expected result
- writing a small sorted file as SAM should produce the expected result
- writing unordered sam from unordered sam
- writing ordered sam from unordered sam
- write single sam file back
- write single bam file back
- saveAsParquet with save args, sequence dictionary, and read group dictionary
- load parquet to sql, save, re-read from avro
- load from sam, save as partitioned parquet, and re-read from partitioned parquet
- save as SAM format
- save as sorted SAM format
- save as BAM format
- save as sorted BAM format
- save as FASTQ format
- save as ADAM parquet format
- saveAsSam SAM format
- saveAsSam SAM format single file
- saveAsSam sorted SAM format single file
- saveAsSam BAM format
- saveAsSam BAM format single file
- saveAsSam sorted BAM format single file
- saveAsFastq
- saveAsFastq as single file
- saveAsFastq with original base qualities
- saveAsFastq sorted by read name
- saveAsFastq sorted by read name with original base qualities
2020-09-09 12:00:32 WARN  RDDBoundAlignmentDataset:190 - Found 20 read names that don't occur exactly twice:
	1x:	20

Samples:
	simread:1:237728409:true
	simread:1:195211965:false
	simread:1:163841413:false
	simread:1:231911906:false
	simread:1:26472783:false
	simread:1:165341382:true
	simread:1:240344442:true
	simread:1:50683371:false
	simread:1:240997787:true
	simread:1:14397233:false
	simread:1:207027738:true
	simread:1:20101800:true
	simread:1:101556378:false
	simread:1:37577445:false
	simread:1:189606653:true
	simread:1:5469106:true
	simread:1:186794283:true
	simread:1:89554252:false
	simread:1:153978724:false
	simread:1:169801933:true
- saveAsFastq paired FASTQ
2020-09-09 12:00:34 WARN  RDDBoundAlignmentDataset:190 - Found 20 read names that don't occur exactly twice:
	1x:	20

Samples:
	simread:1:237728409:true
	simread:1:195211965:false
	simread:1:163841413:false
	simread:1:231911906:false
	simread:1:26472783:false
	simread:1:165341382:true
	simread:1:240344442:true
	simread:1:50683371:false
	simread:1:240997787:true
	simread:1:14397233:false
	simread:1:207027738:true
	simread:1:20101800:true
	simread:1:101556378:false
	simread:1:37577445:false
	simread:1:189606653:true
	simread:1:5469106:true
	simread:1:186794283:true
	simread:1:89554252:false
	simread:1:153978724:false
	simread:1:169801933:true
- saveAsPairedFastq
2020-09-09 12:00:35 WARN  RDDBoundAlignmentDataset:190 - Found 20 read names that don't occur exactly twice:
	1x:	20

Samples:
	simread:1:237728409:true
	simread:1:195211965:false
	simread:1:163841413:false
	simread:1:231911906:false
	simread:1:26472783:false
	simread:1:165341382:true
	simread:1:240344442:true
	simread:1:50683371:false
	simread:1:240997787:true
	simread:1:14397233:false
	simread:1:207027738:true
	simread:1:20101800:true
	simread:1:101556378:false
	simread:1:37577445:false
	simread:1:189606653:true
	simread:1:5469106:true
	simread:1:186794283:true
	simread:1:89554252:false
	simread:1:153978724:false
	simread:1:169801933:true
- saveAsPairedFastq as single files
- don't lose any reads when piping as SAM
2020-09-09 12:00:48 WARN  OutFormatterRunner:190 - Piped command List(sleep, 10) timed out after 5 seconds.
2020-09-09 12:00:48 WARN  OutFormatterRunner:190 - Piped command List(sleep, 10) timed out after 5 seconds.
- lose all records when a command times out
- lose no records without a timeout
2020-09-09 12:01:10 WARN  OutFormatterRunner:190 - Piped command List(python, /tmp/adamTestMvnFJdRuV3/spark-dd24a27c-68b5-4f48-8ee4-75551c32135a/userFiles-eee0a89f-e6ba-4fa6-ab8c-ad776eaebf9a/timeout.py) timed out after 5 seconds.
2020-09-09 12:01:10 WARN  OutFormatterRunner:190 - Piped command List(python, /tmp/adamTestMvnFJdRuV3/spark-dd24a27c-68b5-4f48-8ee4-75551c32135a/userFiles-eee0a89f-e6ba-4fa6-ab8c-ad776eaebf9a/timeout.py) timed out after 5 seconds.
- lose some records when a command times out
- don't lose any reads when piping as SAM using java pipe
- don't lose any reads when piping as BAM
- don't lose any reads when piping fastq to sam
- can properly set environment variables inside of a pipe
- read vcf from alignment pipe !!! IGNORED !!!
- use broadcast join to pull down reads mapped to targets
- use broadcast join against to pull down reads mapped to targets
- use right outer broadcast join to pull down reads mapped to targets
- use right outer broadcast join against to pull down reads mapped to targets
- use shuffle join with feature spanning partitions
- use shuffle join to pull down reads mapped to targets
- use shuffle join with flankSize to pull down reads mapped close to targets
- use right outer shuffle join to pull down reads mapped to targets
- use left outer shuffle join to pull down reads mapped to targets
- use full outer shuffle join to pull down reads mapped to targets
- use shuffle join with group by to pull down reads mapped to targets
- use right outer shuffle join with group by to pull down reads mapped to targets
- cannot provide empty quality score bins
- cannot provide bins with a gap
- cannot provide overlapping bins
- binning quality scores in reads succeeds even if reads have no quality scores
- bin quality scores in reads
- union two read files together
- test k-mer counter
- test dataset based k-mer counter
- transform reads to slice genomic dataset
- transform reads to coverage genomic dataset
- transform reads to feature genomic dataset
- transform reads to fragment genomic dataset
- transform reads to genotype genomic dataset
loading /tmp/adamTestMvnFJdRuV3/TempSuite1345915403626039125.adam as parquet into RDD...
loading /tmp/adamTestMvnFJdRuV3/TempSuite914039891600321637.adam as parquet into RDD...
- transform reads to variant genomic dataset
- cannot have a null processing step ID
- convert a processing description to htsjdk
- GenomicDataset.sort does not fail on unmapped reads
- GenomicDataset.sortLexicographically does not fail on unmapped reads
- left normalize indels
2020-09-09 12:02:27 WARN  DAGScheduler:69 - Broadcasting large task binary with size 1134.2 KiB
- running base recalibration with downsampling doesn't drop reads
- filter RDD bound alignments by MAPQ
- filter dataset bound alignments by MAPQ
- filter RDD bound unaligned alignments
- filter dataset bound unaligned alignments
- filter RDD bound unpaired alignments
- filter dataset bound unpaired alignments
- filter RDD bound duplicate alignments
- filter dataset bound duplicate alignments
- filter RDD bound alignments to primary alignments
- filter dataset bound alignments to primary alignments
- filter RDD bound alignments to read group
- filter dataset bound alignments to read group
- filter RDD bound alignments to read groups
- filter dataset bound alignments to read groups
- filter RDD bound alignments to sample
- filter dataset bound alignments to sample
- filter RDD bound alignments to samples
- filter dataset bound alignments to samples
- sort by read name
- transform dataset via java API
- convert alignments to reads
SmithWatermanSuite:
- gather max position from simple scoring matrix
- gather max position from irregular scoring matrix
- gather max position from irregular scoring matrix with deletions
- score simple alignment with constant gap
- score irregular scoring matrix
- score irregular scoring matrix with indel
- can unroll cigars correctly
- execute simple trackback
- execute trackback with indel
- run end to end smith waterman for simple reads
- run end to end smith waterman for short sequences with indel
- run end to end smith waterman for longer sequences with snp
- run end to end smith waterman for longer sequences with short indel
- run end to end smith waterman for shorter sequence in longer sequence
- run end to end smith waterman for shorter sequence in longer sequence, with indel
- smithWaterman - simple alignment
MdTagSuite:
- null md tag
- zero length md tag
- md tag with non-digit initial value
- md tag invalid base
- md tag, pure insertion
- md tag, pure insertion, test 2
- md tag pure insertion equality
- md tag equality and hashcode
- valid md tags
- get start of read with no mismatches or deletions
- get start of read with no mismatches, but with a deletion at the start
- get start of read with mismatches at the start
- get end of read with no mismatches or deletions
- check that mdtag and rich record return same end
- get end of read with no mismatches, but a deletion at end
- CIGAR with N operator
- CIGAR with multiple N operators
- CIGAR with P operators
- Get correct matches for mdtag with insertion
- Get correct matches for mdtag with mismatches and insertion
- Get correct matches for mdtag with insertion between mismatches
- Get correct matches for mdtag with intron between mismatches
- Get correct matches for mdtag with intron and deletion between mismatches
- Throw exception when number of deleted bases in mdtag disagrees with CIGAR
- Get correct matches for mdtag with mismatch, insertion and deletion
- Get correct matches for mdtag with mismatches, insertion and deletion
- Get correct matches for MDTag with mismatches and deletions
- Get correct matches base from MDTag and CIGAR with N
- get end of read with mismatches and a deletion at end
- get correct string out of mdtag with no mismatches
- get correct string out of mdtag with mismatches at start
- get correct string out of mdtag with deletion at end
- get correct string out of mdtag with mismatches at end
- get correct string out of complex mdtag
- check complex mdtag
- get gapped reference
- move a cigar alignment by two for a read
- rewrite alignment to all matches
- rewrite alignment to two mismatches followed by all matches
- rewrite alignment to include a deletion but otherwise all matches
- rewrite alignment to include an insertion at the start of the read but otherwise all matches
- create new md tag from read vs. reference, perfect match
- create new md tag from read vs. reference, perfect alignment match, 1 mismatch
- create new md tag from read vs. reference, alignment with deletion
- create new md tag from read vs. reference, alignment with insert
- handle '=' and 'X' operators
- CIGAR/MD tag mismatch should cause errors
GenomicDatasetSuite:
- processing a command that is the spark root directory should return an absolute path
- processing a command that is just a single word should do nothing
- processing a command should handle arguments that include spaces
- processing a command that is a single substitution should succeed
- processing a command that is multiple words should split the string
- process a command that is multiple words with a replacement
- process a command that is multiple words with multiple replacements
ParallelFileMergerSuite:
- cannot write both empty gzip block and cram eof
- buffer size must be non-negative
- get the size of several files
- block size must be positive and non-zero when trying to merge files
- must provide files to merge
- if two files are both below the block size, they should merge into one shard
- merge two files where one is greater than the block size
- merge a sharded sam file
- merge a sharded bam file
- merge a sharded cram file
- can't turn a negative index into a path
- generate a path from an index
IndelTableSuite:
- check for indels in a region with known indels
- check for indels in a contig that doesn't exist
- check for indels in a region without known indels
- build indel table from rdd of variants
SnpTableSuite:
- create an empty snp table
- create a snp table from variants on multiple contigs
- create a snp table from a larger set of variants
- perform lookups on multi-contig snp table
- perform lookups on larger snp table
RealignIndelsSuite:
- map reads to targets
- checking mapping to targets for artificial reads
- checking alternative consensus for artificial reads
- checking extraction of reference from reads
- checking realigned reads for artificial input
- checking realigned reads for artificial input with reference file
- checking realigned reads for artificial input using knowns
- checking realigned reads for artificial input using knowns and reads
- skip realigning reads if target is highly covered
- skip realignment if target is an insufficient LOD improvement
- realign reads to an insertion
- test mismatch quality scoring
- test mismatch quality scoring for no mismatches
- test mismatch quality scoring for offset
- test mismatch quality scoring with early exit
- test mismatch quality scoring after unpacking read
- we shouldn't try to realign a region with no target
- we shouldn't try to realign reads with no indel evidence
- test OP and OC tags
- realign a read with an insertion that goes off the end of the read
- if realigning a target doesn't improve the LOD, don't drop reads
- extract seq/qual from a read with no clipped bases
- extract seq/qual from a read with clipped bases at start
- extract seq/qual from a read with clipped bases at end
- if unclip is selected, don't drop base when extracting from a read with clipped bases
- get cigar and coordinates for read that spans indel, no clipped bases
- get cigar and coordinates for read that spans deletion, clipped bases at start
- get cigar and coordinates for read that falls wholly before insertion
- get cigar and coordinates for read that falls wholly after insertion
- get cigar and coordinates for read that falls wholly after deletion
- get cigar and coordinates for read that partially spans insertion, no clipped bases
- get cigar and coordinates for read that partially spans insertion, clipped bases at end
- get cigar and coordinates for read that partially spans insertion, clipped bases both ends
BaseQualityRecalibrationSuite:
2020-09-09 12:03:17 WARN  DAGScheduler:69 - Broadcasting large task binary with size 1134.2 KiB
- BQSR Test Input #1 w/ VCF Sites without caching
2020-09-09 12:03:25 WARN  DAGScheduler:69 - Broadcasting large task binary with size 1134.2 KiB
- BQSR Test Input #1 w/ VCF Sites with caching
2020-09-09 12:03:31 WARN  DAGScheduler:69 - Broadcasting large task binary with size 1134.2 KiB
- BQSR Test Input #1 w/ VCF Sites with serialized caching
DinucCovariateSuite:
- computing dinucleotide pairs for a single base sequence should return (N,N)
- compute dinucleotide pairs for a string of all valid bases
- compute dinucleotide pairs for a string with an N
- compute covariates for a read on the negative strand
- compute covariates for a read on the positive strand
SequenceDictionarySuite:
- Convert from sam sequence record and back
- Convert from SAM sequence dictionary file (with extra fields)
- merge into existing dictionary
- Convert from SAM sequence dictionary and back
- Can retrieve sequence by name
- SequenceDictionary's with same single element are equal
- SequenceDictionary's with same two elements are equals
- SequenceDictionary's with different elements are unequal
- SequenceDictionaries with same elements in different order are compatible
- isCompatible tests equality on overlap
- The addition + works correctly
- The append operation ++ works correctly
- ContainsRefName works correctly for different string types
- Apply on name works correctly for different String types
- convert from sam sequence record and back
- convert from sam sequence dictionary and back
- conversion to sam sequence dictionary has correct sort order
- load sequence dictionary from VCF file
- empty sequence dictionary must be empty
- test filter to reference name
- test filter to reference names
- test filter to reference name by function
GenomicPositionPartitionerSuite:
- partitions the UNMAPPED ReferencePosition into the top partition
- if we do not have a contig for a record, we throw an IAE
- partitioning into N pieces on M total sequence length, where N > M, results in M partitions
- correctly partitions a single dummy sequence into two pieces
- correctly counts cumulative lengths
- correctly partitions positions across two dummy sequences
- test that we can range partition ADAMRecords
- test that we can range partition ADAMRecords indexed by sample
- test that simple partitioning works okay on a reasonable set of ADAMRecords
- test indexed ReferencePosition partitioning works on a set of indexed ADAMRecords
CoverageSuite:
- Convert to coverage from valid Feature
- Convert to coverage from valid Feature with sampleId
- Convert to coverage from Feature with null/empty contigName fails with correct error
- Convert to coverage from Feature with no start/end position fails with correct error
- Convert to coverage from Feature with no score fails with correct error
InnerTreeRegionJoinSuite:
- Ensure same reference regions get passed together
- Overlapping reference regions
- Multiple reference regions do not throw exception
VariantDatasetSuite:
- union two variant genomic datasets together
- round trip to parquet
- save and reload from partitioned parquet
- use broadcast join to pull down variants mapped to targets
- use right outer broadcast join to pull down variants mapped to targets
- use shuffle join to pull down variants mapped to targets
- use right outer shuffle join to pull down variants mapped to targets
- use left outer shuffle join to pull down variants mapped to targets
- use full outer shuffle join to pull down variants mapped to targets
- use shuffle join with group by to pull down variants mapped to targets
- use right outer shuffle join with group by to pull down variants mapped to targets
- convert back to variant contexts
- load parquet to sql, save, re-read from avro
2020-09-09 12:04:10 WARN  DatasetBoundSliceDataset:190 - Saving directly as Parquet from SQL. Options other than compression codec are ignored.
- transform variants to slice genomic dataset
- transform variants to coverage genomic dataset
- transform variants to feature genomic dataset
- transform variants to fragment genomic dataset
- transform variants to read genomic dataset
- transform variants to genotype genomic dataset
- transform variants to variant context genomic dataset
- filter RDD bound variants to filters passed
- filter dataset bound variants to filters passed
- filter RDD bound variants by quality
- filter dataset bound variants by quality
- filter RDD bound variants by read depth
- filter dataset bound variants by read depth
- filter RDD bound variants by reference read depth
- filter dataset bound variants by reference read depth
- filter RDD bound single nucleotide variants
- filter dataset bound single nucleotide variants
- filter RDD bound multiple nucleotide variants
- filter dataset bound multiple nucleotide variants
- filter RDD bound indel variants
- filter dataset bound indel variants
- filter RDD bound variants to single nucleotide variants
- filter dataset bound variants to single nucleotide variants
- filter RDD bound variants to multiple nucleotide variants
- filter dataset bound variants to multiple nucleotide variants
- filter RDD bound variants to indel variants
- filter dataset bound variants to indel variants
- transform dataset via java API
Run completed in 8 minutes, 44 seconds.
Total number of tests run: 1175
Suites: completed 68, aborted 0
Tests: succeeded 1175, failed 0, canceled 0, ignored 5, pending 0
All tests passed.
[INFO] 
[INFO] >>> scoverage-maven-plugin:1.1.1:report (default-cli) > [scoverage]test @ adam-core-spark3_2.12 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-core-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-core-spark3_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-core-spark3_2.12 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/main/scala added.
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/generated-sources/src/main/scala added.
[INFO] 
[INFO] --- exec-maven-plugin:1.5.0:java (generate-scala-products) @ adam-core-spark3_2.12 ---
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] 
[INFO] --- exec-maven-plugin:1.5.0:java (generate-scala-projection-fields) @ adam-core-spark3_2.12 ---
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-core-spark3_2.12 ---
[INFO] Modified 2 of 204 .scala files
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:pre-compile (default-cli) @ adam-core-spark3_2.12 ---
[WARNING] Skipping SCoverage execution - unsupported Scala version "2.12.8"
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-core-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-core-spark3_2.12 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/main/java:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/main/scala:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/generated-sources/src/main/scala:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/generated-sources/annotations:-1: info: compiling
[INFO] Compiling 140 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/2.12.8/classes at 1599678287802
[WARNING] warning: there were 21 deprecation warnings
[WARNING] warning: there were 31 deprecation warnings (since 0.21.0)
[WARNING] warning: there was one deprecation warning (since 1.0.6)
[WARNING] warning: there was one deprecation warning (since 2.11.0)
[WARNING] warning: there were 175 deprecation warnings (since 2.12.0)
[WARNING] warning: there was one deprecation warning (since 2.12.7)
[WARNING] warning: there were 230 deprecation warnings in total; re-run with -deprecation for details
[WARNING] warning: there were 5 feature warnings; re-run with -feature for details
[WARNING] 8 warnings found
[INFO] prepare-compile in 0 s
[INFO] compile in 28 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-core-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:post-compile (default-cli) @ adam-core-spark3_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-core-spark3_2.12 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-core-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 152 resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-core-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-core-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-core-spark3_2.12 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-core-spark3_2.12 ---
Discovery starting.
Discovery completed in 1 second, 792 milliseconds.
Run starting. Expected test count is: 1175
RepairPartitionsSuite:
- don't pull from the first partition
- properly handle pulling from an empty iterator
- gets a single read from the partition if there are no other reads in the pair
- gets all the reads from a pair from the start of a partition
- properly handle dropping from an empty iterator
- don't drop from the first partition
- drop a single read from the partition if there are no other reads in the pair
- drops all the reads from a pair from the start of a partition
- only append to the first partition
- drop a single read from the partition and append read when in the middle
- drop reads from the start and don't append when in the last partition
- can't have more records than number of partitions
- unroll array for broadcast
2020-09-09 12:05:20 WARN  Utils:69 - Your hostname, research-jenkins-worker-07 resolves to a loopback address: 127.0.1.1; using 192.168.10.27 instead (on interface eth0)
2020-09-09 12:05:20 WARN  Utils:69 - Set SPARK_LOCAL_IP if you need to bind to another address
2020-09-09 12:05:20 WARN  NativeCodeLoader:62 - Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
- move pairs around an rdd
FlagStatSuite:
- Standard FlagStat test
ModPartitionerSuite:
- report number of partitions correctly
- partition a number that is lower than the number of partitions and positive
- partition a number that is greater than the number of partitions and positive
- partition a number that is lower than the number of partitions and negative
- partition a number that is greater than the number of partitions and negative
- fire an exception if input is not an integer
TwoBitFileSuite:
- correctly read sequence from .2bit file
- correctly return masked sequences from .2bit file
- correctly return Ns from .2bit file
- correctly calculates sequence dictionary
NonoverlappingRegionsSuite:
- alternating returns an alternating seq of items
- Single region returns itself
- Two adjacent regions will be merged
- Nonoverlapping regions will all be returned
- Many overlapping regions will all be merged
- ADAMRecords return proper references
ReferencePositionSuite:
- create reference position from mapped read
- create reference position from variant
- create reference position from genotype
- create reference position from variant starting at vcf 0
- create reference position from genotype starting at vcf 0
ConsensusGeneratorFromReadsSuite:
- checking search for consensus list for artificial reads
FragmentConverterSuite:
- build a fragment collector and convert to a read
- if a fragment isn't associated with a contig, don't get a fragment collector
- convert an rdd of discontinuous fragments, all from the same contig
- convert an rdd of contiguous fragments, all from the same contig
- convert an rdd of varied fragments from multiple contigs
FileMergerSuite:
- cannot write both empty gzip block and cram eof
- buffer size must be non-negative
RichAlignmentSuite:
- Unclipped Start
- Unclipped End
- tags contains optional fields
- read overlap unmapped read
- read overlap reference position
- read overlap same position different contig
SingleReadBucketSuite:
- convert unmapped pair to fragment
- convert proper pair to fragment
- convert read pair to fragment with first of pair chimeric read
RecalibrationTableSuite:
- look up quality scores in table
FlankSlicesSuite:
- don't put flanks on non-adjacent slices
- put flanks on adjacent slices
InterleavedFastqInputFormatSuite:
- interleaved FASTQ hadoop reader: interleaved_fastq_sample1.ifq->interleaved_fastq_sample1.ifq.output
- interleaved FASTQ hadoop reader: interleaved_fastq_sample2.ifq->interleaved_fastq_sample2.ifq.output
- interleaved FASTQ hadoop reader: interleaved_fastq_sample3.ifq->interleaved_fastq_sample3.ifq.output
- interleaved FASTQ hadoop reader: interleaved_fastq_sample4.ifq->interleaved_fastq_sample4.ifq.output
- interleaved FASTQ hadoop reader: interleaved_fastq_sample5.ifq->interleaved_fastq_sample5.ifq.output
TreeRegionJoinSuite:
- run a join between data on a single contig
ReferenceRegionSuite:
- cannot create an empty predicate
- parse empty string throws IllegalArgumentException
- parse contigName only string into reference regions
- parse to end strings into reference regions
- parse string into reference regions
- contains(: ReferenceRegion)
- contains(: ReferencePosition)
- merge
- overlaps and covers
- overlapsBy and coversBy
- distance(: ReferenceRegion)
- distance(: ReferencePosition)
- unstrandedDistance
- subtract fails on non-overlapping and non-covering regions
- subtract
- create region from unmapped read fails
- create region from read with null alignment positions fails
- create stranded region from unmapped read fails
- create stranded region from read with null alignment positions fails
- create stranded region from read with null alignment strand fails
- create stranded region from read on forward strand
- create stranded region from read on reverse strand
- create region from mapped read contains read start and end
- validate that adjacent regions can be merged
- validate that non-adjacent regions cannot be merged
- validate that nearby regions can be merged
- validate that non-nearby regions cannot be merged
- compute convex hull of two sets
- region name is sanitized when creating region from read
- intersection fails on non-overlapping regions
- intersection fails when minOverlap is not met
- compute intersection
- overlap tests for oriented reference region
- check the width of a reference region
- make a reference region for a variant or genotype
- make a reference region for a variant or genotype starting at VCF 0
- uniformly pad a reference region
- uniformly pad a reference region into negative coordinate space, ensure non negative start
- unevenly pad a reference region
- unevenly pad a reference region into negative coordinate space, ensure non negative start
- can build an open ended reference region
- can build an open ended reference region with strand
- can build a reference region with an open start position
- can build a reference region with an open start position with strand
- can build a reference region that covers the entirety of a contig
- can build a reference region that covers the entirety of a contig with strand
- convert a genotype and then get the reference region
- create region from feature with null alignment positions fails
- create stranded region from feature with null alignment positions fails
- create stranded region from feature with null alignment strand fails
- create stranded region from feature on forward strand
- create stranded region from feature on reverse strand
CoverageDatasetSuite:
- correctly saves coverage
- can read a bed file to coverage
- correctly filters coverage with predicate
- keeps sample metadata
- can read a bed file with multiple samples to coverage
- correctly flatmaps coverage without aggregated bins
- correctly flatmaps coverage with aggregated bins
- collapses coverage records in one partition
- approximately collapses coverage records in multiple partitions
2020-09-09 12:05:38 WARN  DatasetBoundSliceDataset:190 - Saving directly as Parquet from SQL. Options other than compression codec are ignored.
- transform coverage to slice genomic dataset
- transform coverage to feature genomic dataset
2020-09-09 12:05:39 WARN  package:69 - Truncated the string representation of a plan since it was too large. This behavior can be adjusted by setting 'spark.sql.debug.maxToStringFields'.
- transform coverage to fragment genomic dataset
- transform coverage to read genomic dataset
- transform coverage to genotype genomic dataset
- transform coverage to variant genomic dataset
- transform coverage to variant context genomic dataset
- copy coverage rdd
- copy coverage dataset
- copy coverage rdd without sequence dictionary
- copy coverage dataset without sequence dictionary
- transform dataset via java API
RecalibratorSuite:
- don't replace quality if quality was null
- if no covariates, return alignment
- skip recalibration if base is below quality threshold
- recalibrate changed bases above quality threshold
SliceDatasetSuite:
- create a new slice genomic dataset
- create a new slice genomic dataset with sequence dictionary
- merge slices into a sequence genomic dataset
- save as parquet
- round trip as parquet
- save as fasta
- save as single file fasta
- convert slices to reads
- convert slices to sequences
GenotypeDatasetSuite:
- union two genotype genomic datasets together
- round trip to parquet
- round trip to partitioned parquet
- use broadcast join to pull down genotypes mapped to targets
- use right outer broadcast join to pull down genotypes mapped to targets
- use shuffle join to pull down genotypes mapped to targets
- use right outer shuffle join to pull down genotypes mapped to targets
- use left outer shuffle join to pull down genotypes mapped to targets
- use full outer shuffle join to pull down genotypes mapped to targets
- use shuffle join with group by to pull down genotypes mapped to targets
- use right outer shuffle join with group by to pull down genotypes mapped to targets
- convert back to variant contexts
- load parquet to sql, save, re-read from avro
2020-09-09 12:05:57 WARN  DatasetBoundSliceDataset:190 - Saving directly as Parquet from SQL. Options other than compression codec are ignored.
- transform genotypes to slice genomic dataset
- transform genotypes to coverage genomic dataset
- transform genotypes to feature genomic dataset
- transform genotypes to fragment genomic dataset
- transform genotypes to read genomic dataset
- transform genotypes to variant genomic dataset
- transform genotypes to variant context genomic dataset
- loading genotypes then converting to variants yields same output as loading variants
- filter RDD bound genotypes to genotype filters passed
- filter dataset bound genotypes to genotype filters passed
- filter RDD bound genotypes by genotype quality
- filter dataset bound genotypes by genotype quality
- filter RDD bound genotypes by read depth
- filter dataset bound genotypes by read depth
- filter RDD bound genotypes by alternate read depth
- filter dataset bound genotypes by alternate read depth
- filter RDD bound genotypes by reference read depth
- filter dataset bound genotypes by reference read depth
- filter RDD bound genotypes by sample
- filter dataset bound genotypes by sample
- filter RDD bound genotypes by samples
- filter dataset bound genotypes by samples
- filter RDD bound no call genotypes
- filter dataset no call genotypes
- round trip gVCF END attribute without nested variant annotations rdd bound
- round trip gVCF END attribute without nested variant annotations dataset bound
- round trip gVCF END attribute with nested variant annotations rdd bound
- round trip gVCF END attribute with nested variant annotations dataset bound
- transform dataset via java API
FragmentDatasetSuite:
- don't lose any reads when piping interleaved fastq to sam
- don't lose any reads when piping tab5 to sam
- don't lose any reads when piping tab6 to sam
- use broadcast join to pull down fragments mapped to targets
- use right outer broadcast join to pull down fragments mapped to targets
- use shuffle join to pull down fragments mapped to targets
- use right outer shuffle join to pull down fragments mapped to targets
- use left outer shuffle join to pull down fragments mapped to targets
- use full outer shuffle join to pull down fragments mapped to targets
- use shuffle join with group by to pull down fragments mapped to targets
- use right outer shuffle join with group by to pull down fragments mapped to targets
- bin quality scores in fragments
- union two genomic datasets of fragments together
- load parquet to sql, save, re-read from avro
- transform fragments to slice genomic dataset
- transform fragments to coverage genomic dataset
- transform fragments to feature genomic dataset
- transform fragments to read genomic dataset
- transform fragments to genotype genomic dataset
- transform fragments to variant genomic dataset
- transform fragments to variant context genomic dataset
- paired read names with index sequences in read names can group into fragments
- interleaved paired read names with index sequences in read names can group into fragments
- interleaved paired read names with index sequences in read names as fragments
- transform dataset via java API
- dataset and rdd conversion to alignments are equivalent
SingleFastqInputFormatSuite:
- FASTQ hadoop reader: fastq_sample1.fq->single_fastq_sample1.fq.output
- FASTQ hadoop reader: fastq_sample2.fq->single_fastq_sample2.fq.output
- FASTQ hadoop reader: fastq_sample3.fq->single_fastq_sample3.fq.output
- FASTQ hadoop reader: fastq_sample4.fq->single_fastq_sample4.fq.output
VariantContextDatasetSuite:
- load a gvcf with a missing info field set to .
- union two variant context genomic datasets together
- can write, then read in .vcf file
- can write as a single file via simple saveAsVcf method, then read in .vcf file
- can write as a single file via full saveAsVcf method, then read in .vcf file
- transform a vcf file with bad header
- read a vcf file with multi-allelic variants to split
- support VCFs with +Inf/-Inf float values
- support VCFs with `nan` instead of `NaN` float values
- don't lose any variants when piping as VCF
- pipe works with empty partitions
- don't lose any non-default VCF header lines or attributes when piping as VCF
- save a file sorted by contig index
- save a lexicographically sorted file
- save a multiallelic gvcf !!! IGNORED !!!
- test metadata
- save sharded bgzip vcf
- save bgzip vcf as single file
- can't save file with non-vcf extension
- transform variant contexts to slice genomic dataset
- transform variant contexts to coverage genomic dataset
- transform variant contexts to feature genomic dataset
- transform variant contexts to fragment genomic dataset
- transform variant contexts to read genomic dataset
- transform variant contexts to genotype genomic dataset
- transform variant contexts to variant genomic dataset
- save and reload from partitioned parquet
- transform dataset via java API
ConsensusSuite:
- test the insertion of a consensus insertion into a reference
- test the insertion of a consensus deletion into a reference
- inserting empty consensus returns the reference
SequenceDatasetSuite:
- create a new sequence genomic dataset
- create a new sequence genomic dataset with sequence dictionary
- save as parquet
- round trip as parquet
- save as fasta
- save as single file fasta
- convert sequences to reads
- convert sequences to slices
- slice sequences to a maximum length
- slice sequences shorter than maximum length
- filter sequences by overlapping region
- filter sequences failing to overlap region
- filter sequences by overlapping regions
- filter sequences failing to overlap regions
- slice sequences overlapping a smaller region
- slice sequences overlapping a larger region
- slice sequences failing to overlap a region
- slice sequences overlapping smaller regions
- slice sequences overlapping larger regions
- slice sequences failing to overlap regions
AttributeUtilsSuite:
- parseTags returns a reasonable set of tagStrings
- parseTags works with NumericSequence tagType
- empty string is parsed as zero tagStrings
- incorrectly formatted tag throws an exception
- string tag with a ':' in it is correctly parsed
- oq string tag with many ':' in it is correctly parsed
- oq string tag with a ',' in it is correctly parsed
- if a tag is an array but doesn't define it's format, throw
MarkDuplicatesSuite:
- single read
- reads at different positions
- reads at the same position
- reads at the same position with clipping
- reads on reverse strand
- unmapped reads
- read pairs
- read pairs with fragments
- quality scores
- read pairs that cross chromosomes
- single fragment
- fragments at different positions
- fragments at the same position
- fragments at the same position with clipping
- fragments on reverse strand
- unmapped fragments
- read pairs as fragments
- read pairs with fragments as fragments
- chimeric fragments
- inverse pairs
- supplemental reads
TranscriptEffectConverterSuite:
- parse empty transcript effect
- parse empty transcript effect strict validation stringency
- parse invalid transcript effect
- parse invalid transcript effect strict validation stringency
- parse transcript effect
- parse empty list VCF ANN attribute
- parse empty list VCF ANN attribute strict validation stringency
- parse empty string VCF ANN attribute
- parse empty string VCF ANN attribute strict validation stringency
- parse invalid VCF ANN attribute
- parse invalid VCF ANN attribute strict validation stringency
- parse VCF ANN attribute with one transcript effect
- parse VCF ANN attribute with multiple transcript effects
- convert to transcript effect from null VCF ANN attribute in variant context
- convert to transcript effect from empty list VCF ANN attribute in variant context
- convert to transcript effect from empty list VCF ANN attribute in variant context strict validation stringency
- convert to transcript effect from empty string VCF ANN attribute in variant context
- convert to transcript effect from empty string VCF ANN attribute in variant context strict validation stringency
- convert to transcript effect from invalid VCF ANN attribute in variant context
- convert to transcript effect from invalid VCF ANN attribute in variant context strict validation stringency
2020-09-09 12:06:48 WARN  TranscriptEffectConverter$:190 - Could not convert VCF INFO reserved key ANN value to TranscriptEffect, caught java.lang.NumberFormatException: For input string: "not a number".
- convert to transcript effect from VCF ANN attribute with invalid number in variant context lenient validation stringency
2020-09-09 12:06:48 WARN  TranscriptEffectConverter$:190 - Could not convert VCF INFO reserved key ANN value to TranscriptEffect, caught java.lang.NumberFormatException: For input string: "not a number".
- convert to transcript effect from VCF ANN attribute with invalid fraction in variant context lenient validation stringency
- convert to transcript effect from VCF ANN attribute with invalid number in variant context strict validation stringency
- convert to transcript effect from VCF ANN attribute with invalid fraction in variant context strict validation stringency
- convert to transcript effect from VCF ANN attribute in variant context different alt allele
- convert to transcript effect from VCF ANN attribute in variant context same alt allele
- convert to transcript effect from VCF ANN attribute in variant context multiple effects same alt allele
- convert transcript effect to VCF ANN attribute value
- convert transcript effect with null fields to VCF ANN attribute value
2020-09-09 12:06:48 WARN  TranscriptEffectConverter$:190 - Incorrect fractional value ?/2, missing numerator
- convert transcript effect with incorrect fractional value to VCF ANN attribute value
IndelRealignmentTargetSuite:
- checking simple realignment target
- creating simple target from read with deletion
- creating simple target from read with insertion
- joining simple realignment targets on same chr
- joining simple realignment targets on different chr throws exception
- creating targets from three intersecting reads, same indel
- creating targets from three intersecting reads, two different indel
- creating targets from two disjoint reads
- creating targets for artificial reads: one-by-one
- creating targets for artificial reads: all-at-once (merged)
- creating indel targets for mason reads
- additional indel targets taken from consensus generator
NormalizationUtilsSuite:
- cannot move an indel left if there are no bases to it's left
- move a simple indel to farthest position left until bases run out
- move a simple indel to farthest position left, past length of indel
- cannot move a left normalized indel in a short tandem repeat
- move an indel in a short tandem repeat
- move an indel in a short tandem repeat of more than 2 bases, where shift is not an integer multiple of repeated sequence length
- moving a simple read with single deletion that cannot shift
- shift an indel left by 0 in a cigar
- shift an indel left by 1 in a cigar
- do not left align a complex read which is already left aligned
ReadGroupDictionarySuite:
- simple conversion to and from sam read group
- sample name must be set
- simple equality checks
- get samples from read group dictionary
- empty read group is empty
- merging a dictionary with itself should work
- round trip a record with all attributes set
RightOuterTreeRegionJoinSuite:
- Ensure same reference regions get passed together
- Overlapping reference regions
InnerShuffleRegionJoinSuite:
- Overlapping reference regions
- Multiple reference regions do not throw exception
FeatureDatasetSuite:
- round trip GTF format
- save GTF as GFF3 format
- save GTF as BED format
- save GTF as IntervalList format
- save GTF as NarrowPeak format
- save GFF3 as GTF format
- save GFF3 as BED format
- save GFF3 as IntervalList format
- save GFF3 as NarrowPeak format
- round trip GFF3 format
- ignore FASTA sequence in GFF3 file
- save BED as GTF format
- save BED as GFF3 format
- save BED as IntervalList format
- save BED as NarrowPeak format
- round trip BED6 format
- keeps sample metadata
- round trip BED12 format
- save to UCSC BED format
- save IntervalList as GTF format
- save IntervalList as GFF3 format
- save IntervalList as BED format
- save IntervalList as IntervalList format
- save IntervalList as NarrowPeak format
- round trip IntervalList format
- save NarrowPeak as GTF format
- save NarrowPeak as GFF3 format
- save NarrowPeak as BED format
- save NarrowPeak as IntervalList format
- save NarrowPeak as NarrowPeak format
- round trip NarrowPeak format
- sort by reference
- sort by reference and feature fields
- sort gene features by reference and gene structure
- sort transcript features by reference and gene structure
- sort exon features by reference and gene structure
- sort intron features by reference and gene structure
- correctly flatmaps CoverageDataset from FeatureDataset
- use broadcast join to pull down features mapped to targets
- use right outer broadcast join to pull down features mapped to targets
- use shuffle join to pull down features mapped to targets
- use right outer shuffle join to pull down features mapped to targets
- use left outer shuffle join to pull down features mapped to targets
- use full outer shuffle join to pull down features mapped to targets
- use shuffle join with group by to pull down features mapped to targets
- use right outer shuffle join with group by to pull down features mapped to targets
- union two feature rdds together
- obtain sequence dictionary contig lengths from header in IntervalList format
- don't lose any features when piping as BED format
- don't lose any features when piping as GTF format
- don't lose any features when piping as GFF3 format
- don't lose any features when piping as NarrowPeak format
- load parquet to sql, save, re-read from avro
- load partitioned parquet to sql, save, re-read from avro
2020-09-09 12:07:08 WARN  DatasetBoundSliceDataset:190 - Saving directly as Parquet from SQL. Options other than compression codec are ignored.
- transform features to slice genomic dataset
- transform features to coverage genomic dataset
- transform features to fragment genomic dataset
- transform features to read genomic dataset
- transform features to genotype genomic dataset
- transform features to variant genomic dataset
- transform features to variant context genomic dataset
- filter RDD bound features by feature type
- filter dataset bound features by feature type
- filter RDD bound features by feature types
- filter dataset bound features by feature types
- filter RDD bound features by gene
- filter dataset bound features by gene
- filter RDD bound features by genes
- filter dataset bound features by genes
- filter RDD bound features by transcript
- filter dataset bound features by transcript
- filter RDD bound features by transcripts
- filter dataset bound features by transcripts
- filter RDD bound features by exon
- filter dataset bound features by exon
- filter RDD bound features by exons
- filter dataset bound features by exons
- filter RDD bound features by score
- filter dataset bound features by score
- filter RDD bound features by parent
- filter dataset bound features by parent
- filter RDD bound features by parents
- filter dataset bound features by parents
- filter RDD bound features by attribute
- filter dataset bound features by attribute
- transform dataset via java API
AlphabetSuite:
- test size of a case-sensitive alphabet
- test apply of a case-sensitive alphabet
- test reverse complement of a case-sensitive alphabet
- test exact reverse complement of a case-sensitive alphabet
- test size of a case-insensitive alphabet
- test apply of a case-insensitive alphabet
- test reverse complement of a case-insensitive alphabet
- test exact reverse complement of a case-insensitive alphabet
- DNA alphabet
- map unknown bases to N
SortedGenomicDatasetSuite:
- testing that partition and sort provide correct outputs
- testing copartition maintains or adds sort
- testing that we don't drop any data on the right side even though it doesn't map to a partition on the left
- testing that sorted shuffleRegionJoin matches unsorted
- testing that sorted fullOuterShuffleRegionJoin matches unsorted
- testing that sorted rightOuterShuffleRegionJoin matches unsorted
- testing that sorted leftOuterShuffleRegionJoin matches unsorted
- testing that we can persist the sorted knowledge
VariantContextConverterSuite:
- Convert htsjdk site-only SNV to ADAM
- Convert somatic htsjdk site-only SNV to ADAM
- Convert htsjdk site-only CNV to ADAM
- Convert htsjdk SNV w/ genotypes w/ phase information to ADAM
- Convert htsjdk SNV with different variant filters to ADAM
- Convert htsjdk SNV with different genotype filters to ADAM
- Convert ADAM site-only SNV to htsjdk
- Convert ADAM SNV w/ genotypes to htsjdk
- Convert ADAM SNV w/ genotypes but bad SB to htsjdk with strict validation
2020-09-09 12:07:23 WARN  VariantContextConverter:190 - Applying annotation extraction function org.bdgenomics.adam.converters.VariantContextConverter$$Lambda$694/573926093@13696022 to {"variant": {"referenceName": "1", "start": 0, "end": 1, "names": [], "splitFromMultiAllelic": false, "referenceAllele": "A", "alternateAllele": "T", "quality": null, "filtersApplied": null, "filtersPassed": null, "filtersFailed": [], "annotation": null}, "referenceName": null, "start": null, "end": null, "variantCallingAnnotations": {"filtersApplied": null, "filtersPassed": null, "filtersFailed": [], "downsampled": null, "baseQRankSum": null, "fisherStrandBiasPValue": 3.0, "rmsMapQ": 0.0, "mapq0Reads": 5, "mqRankSum": null, "readPositionRankSum": null, "genotypePriors": [], "genotypePosteriors": [], "vqslod": null, "culprit": null, "attributes": {}}, "sampleId": "NA12878", "sampleDescription": null, "processingDescription": null, "alleles": ["REF", "ALT"], "expectedAlleleDosage": null, "referenceReadDepth": null, "alternateReadDepth": null, "readDepth": null, "minReadDepth": null, "genotypeQuality": null, "genotypeLikelihoods": [], "nonReferenceLikelihoods": [], "strandBiasComponents": [0, 2], "splitFromMultiAllelic": false, "phased": false, "phaseSetId": null, "phaseQuality": null} failed with java.lang.IllegalArgumentException: requirement failed: Illegal strand bias components length. Must be empty or 4. In:
- Convert ADAM SNV w/ genotypes but bad SB to htsjdk with lenient validation
{"variant": {"referenceName": "1", "start": 0, "end": 1, "names": [], "splitFromMultiAllelic": false, "referenceAllele": "A", "alternateAllele": "T", "quality": null, "filtersApplied": null, "filtersPassed": null, "filtersFailed": [], "annotation": null}, "referenceName": null, "start": null, "end": null, "variantCallingAnnotations": {"filtersApplied": null, "filtersPassed": null, "filtersFailed": [], "downsampled": null, "baseQRankSum": null, "fisherStrandBiasPValue": 3.0, "rmsMapQ": 0.0, "mapq0Reads": 5, "mqRankSum": null, "readPositionRankSum": null, "genotypePriors": [], "genotypePosteriors": [], "vqslod": null, "culprit": null, "attributes": {}}, "sampleId": "NA12878", "sampleDescription": null, "processingDescription": null, "alleles": ["REF", "ALT"], "expectedAlleleDosage": null, "referenceReadDepth": null, "alternateReadDepth": null, "readDepth": null, "minReadDepth": null, "genotypeQuality": null, "genotypeLikelihoods": [], "nonReferenceLikelihoods": [], "strandBiasComponents": [0, 2], "splitFromMultiAllelic": false, "phased": false, "phaseSetId": null, "phaseQuality": null}.
- Convert htsjdk multi-allelic sites-only SNVs to ADAM
- Convert htsjdk multi-allelic SNVs to ADAM and back to htsjdk
- Convert gVCF reference records to ADAM
- Convert htsjdk variant context with no IDs to ADAM
- Convert htsjdk variant context with one ID to ADAM
- Convert htsjdk variant context with multiple IDs to ADAM
- Convert ADAM variant context with no names to htsjdk
- Convert ADAM variant context with one name to htsjdk
- Convert ADAM variant context with multiple names to htsjdk
- Convert ADAM variant context with null filters applied to htsjdk
- Convert ADAM variant context with no filters applied to htsjdk
- Convert ADAM variant context with passing filters to htsjdk
- Convert ADAM variant context with failing filters to htsjdk
- no phasing set going htsjdk->adam
- phased but no phase set info going htsjdk->adam
- set phase set and extract going htsjdk->adam
- no allelic depth going htsjdk->adam
- set allelic depth going htsjdk->adam
- no gt read depth going htsjdk->adam
- extract gt read depth going htsjdk->adam
- no min gt read depth going htsjdk->adam
- extract min gt read depth going htsjdk->adam
- no genotype quality going htsjdk->adam
- extract genotype quality going htsjdk->adam
- no phred likelihood going htsjdk->adam
- extract phred likelihoods going htsjdk->adam
- no strand bias info going htsjdk->adam
- extract strand bias info going htsjdk->adam
- no filters going htsjdk->adam
- filters passed going htsjdk->adam
- extract single filter going htsjdk->adam
- extract multiple filters going htsjdk->adam
- no fisher strand bias going htsjdk->adam
- extract fisher strand bias going htsjdk->adam
- no rms mapping quality going htsjdk->adam
- extract rms mapping quality going htsjdk->adam
- no mq0 going htsjdk->adam
- extract mq0 going htsjdk->adam
- no gt read depth going adam->htsjdk
- extract gt read depth going adam->htsjdk
- throw iae if missing one component of gt read depth going adam->htsjdk
- no depth going adam->htsjdk
- extract depth going adam->htsjdk
- no min depth going adam->htsjdk
- extract min depth going adam->htsjdk
- no quality going adam->htsjdk
- extract quality going adam->htsjdk
- no genotype likelihoods going adam->htsjdk
- extract genotype likelihoods going adam->htsjdk
- no strand bias going adam->htsjdk
- malformed strand bias going adam->htsjdk
- extract strand bias going adam->htsjdk
- no phasing info going adam->htsjdk
- unphased going adam->htsjdk
- phased but no ps/pq going adam->htsjdk
- phased but no pq going adam->htsjdk
- phased but no ps going adam->htsjdk
- phased going adam->htsjdk
- no filter info going adam->htsjdk
- if filters applied, must set passed/failed going adam->htsjdk
- filters passed going adam->htsjdk
- if filters failed, must set filters failed going adam->htsjdk
- single filter failed going adam->htsjdk
- multiple filters failed going adam->htsjdk
- no fisher strand bias going adam->htsjdk
- extract fisher strand bias going adam->htsjdk
- no rms mapping quality going adam->htsjdk
- extract rms mapping quality going adam->htsjdk
- no mapping quality 0 reads going adam->htsjdk
- extract mapping quality 0 reads going adam->htsjdk
- no names set going htsjdk->adam
- single name set going htsjdk->adam
- multiple names set going htsjdk->adam
- no quality going htsjdk->adam
- quality set going htsjdk->adam
- no filters applied going htsjdk->adam
- filters applied and passed going htsjdk->adam
- single filter applied and failed going htsjdk->adam
- multiple filters applied and failed going htsjdk->adam
- no names set adam->htsjdk
- set a single name adam->htsjdk
- set multiple names adam->htsjdk
- no qual set adam->htsjdk
- qual is set adam->htsjdk
- no filters applied adam->htsjdk
- null filters applied adam->htsjdk
- filters passed adam->htsjdk
- if filter failed, must have filters adam->htsjdk
- single filter failed adam->htsjdk
- multiple filters failed adam->htsjdk
- no ancestral allele set going htsjdk->adam
- ancestral allele set going htsjdk->adam
- no dbsnp membership set going htsjdk->adam
- dbsnp membership set going htsjdk->adam
- no hapmap2 membership set going htsjdk->adam
- hapmap2 membership set going htsjdk->adam
- no hapmap3 membership set going htsjdk->adam
- hapmap3 membership set going htsjdk->adam
- no validated set going htsjdk->adam
- validated set going htsjdk->adam
- no 1000G membership set going htsjdk->adam
- 1000G membership set going htsjdk->adam
- not somatic going htsjdk->adam
- somatic going htsjdk->adam
- no allele count going htsjdk->adam
- single allele count going htsjdk->adam
- multiple allele counts going htsjdk->adam
- no allele frequency going htsjdk->adam
- single allele frequency going htsjdk->adam
- single allele frequency is +Inf going htsjdk->adam
- single allele frequency is -Inf going htsjdk->adam
- multiple allele frequencies going htsjdk->adam
- no CIGAR going htsjdk->adam
- single CIGAR going htsjdk->adam
- multiple CIGARs going htsjdk->adam
- no read depth going htsjdk->adam
- single read depth going htsjdk->adam
- multiple read depths going htsjdk->adam
- no forward read depth going htsjdk->adam
- single forward read depth going htsjdk->adam
- multiple forward read depths going htsjdk->adam
- no reverse read depth going htsjdk->adam
- single reverse read depth going htsjdk->adam
- multiple reverse read depths going htsjdk->adam
- no ancestral allele set adam->htsjdk
- ancestral allele set adam->htsjdk
- no dbsnp membership set adam->htsjdk
- dbsnp membership set adam->htsjdk
- no hapmap2 membership set adam->htsjdk
- hapmap2 membership set adam->htsjdk
- no hapmap3 membership set adam->htsjdk
- hapmap3 membership set adam->htsjdk
- no validated set adam->htsjdk
- validated set adam->htsjdk
- no 1000G membership set adam->htsjdk
- 1000G membership set adam->htsjdk
- no allele count set adam->htsjdk
- allele count set adam->htsjdk
- no allele frequency set adam->htsjdk
- allele frequency set adam->htsjdk
- no cigar set adam->htsjdk
- cigar set adam->htsjdk
- no read depth set adam->htsjdk
- read depth set adam->htsjdk
- read depth without reference read depth
- reference read depth without read depth
- no forward read depth set adam->htsjdk
- forward read depth set adam->htsjdk
- reference forward read depth without forward read depth
- forward read depth without reference forward read depth
- no reverse read depth set adam->htsjdk
- reverse read depth set adam->htsjdk
- reference reverse read depth without reverse read depth
- reverse read depth without reference reverse read depth
- VCF INFO attribute Number=0 Type=Flag adam->htsjdk
- VCF INFO attribute Number=4 Type=Flag adam->htsjdk unsupported, strict !!! IGNORED !!!
- VCF INFO attribute Number=1 Type=Integer adam->htsjdk
- VCF INFO attribute Number=4 Type=Integer adam->htsjdk
- VCF INFO attribute Number=A Type=Integer adam->htsjdk
- VCF INFO attribute Number=R Type=Integer adam->htsjdk
- VCF INFO attribute Number=R Type=String adam->htsjdk
- VCF INFO attribute Number=G Type=String adam->htsjdk not supported
- VCF INFO attribute Number=0 Type=Flag htsjdk->adam
- VCF INFO attribute Number=1 Type=Integer htsjdk->adam
- VCF INFO attribute Number=4 Type=Integer htsjdk->adam
- VCF INFO attribute Number=4 Type=Float htsjdk->adam
- VCF INFO attribute Number=A Type=Integer htsjdk->adam
- VCF INFO attribute Number=R Type=Integer htsjdk->adam
- VCF INFO attribute Number=R Type=String htsjdk->adam
- VCF INFO attribute Number=G Type=String htsjdk->adam not supported
- VCF FORMAT attribute Number=0 Type=Flag adam->htsjdk not supported
- VCF FORMAT attribute Number=1 Type=Integer adam->htsjdk
- VCF FORMAT attribute Number=4 Type=Integer adam->htsjdk
- VCF FORMAT attribute Number=A Type=Integer adam->htsjdk
- VCF FORMAT attribute Number=R Type=Integer adam->htsjdk
- VCF FORMAT attribute Number=R Type=String adam->htsjdk
- VCF FORMAT attribute Number=0 Type=Flag htsjdk->adam is not supported
- VCF FORMAT attribute Number=1 Type=Integer htsjdk->adam
- VCF FORMAT attribute Number=4 Type=Integer htsjdk->adam
- VCF FORMAT attribute Number=4 Type=Float htsjdk->adam
- VCF FORMAT attribute Number=A Type=Integer htsjdk->adam
- VCF FORMAT attribute Number=R Type=Integer htsjdk->adam
- VCF FORMAT attribute Number=R Type=String htsjdk->adam
- VCF FORMAT attribute Number=G Type=String htsjdk->adam
- respect end position for symbolic alts
FastqRecordConverterSuite:
- test read name suffix and index of pair must match
- test parseReadInFastq, read suffix removal
- test parseReadInFastq, read metadata removal
- test parseReadInFastq, read quality shorter than read length, padded with B
- test parseReadInFastq, read quality longer than read length 
- test parseReadInFastq, no read quality
- testing FastqRecordConverter.convertPair with valid input
- testing FastqRecordConverter.convertPair with 7-line invalid input
- testing FastqRecordConverter.convertPair with invalid input: first read length and qual don't match
- testing FastqRecordConverter.convertPair with invalid input: second read length and qual don't match
- testing FastqRecordConverter.convertFragment with valid input
- testing FastqRecordConverter.convertFragment with another valid input having /1, /2 suffixes
- testing FastqRecordConverter.convertFragment with invalid input: different read names
- testing FastqRecordConverter.convertRead with valid input
- testing FastqRecordConverter.convertRead with valid input: setFirstOfPair set to true
- testing FastqRecordConverter.convertRead with valid input: setSecondOfPair set to true
- testing FastqRecordConverter.convertRead with valid input: setFirstOfPair and setSecondOfPair both true
- testing FastqRecordConverter.convertRead with valid input, no qual, strict
- testing FastqRecordConverter.convertRead with valid input, no qual, not strict
AttributeSuite:
- test SAMTagAndValue parsing
- Attributes can be correctly re-encoded as text SAM tags
GFF3HeaderWriterSuite:
- write gff3 header pragma
BinQualitiesSuite:
- make a quality score bin
- can't have a quality score bin with negative score
- can't have a quality score bin with high score below low
- can't have a quality score bin with high score above 255
- can't have a quality score bin with score outside
- make a quality score bin from a string
- quality score bin must have exactly 3 elements
- quality score bin must be integers
- must define at least one bin
- build multiple bins
- rewrite quality scores for a read
- rewriting quality scores fails if bins overlap
- rewriting quality scores fails if base is out of bounds
- skip read if qualities are null
- rewrite a read
IndexedFastaFileSuite:
- correctly generates sequence dictionary from .dict file
- correctly gets sequence
- fails when fai index is not provided
2020-09-09 12:07:23 WARN  IndexedFastaFile:190 - Caught exception java.lang.NullPointerException when loading FASTA sequence dictionary. Using empty dictionary instead.
- passes when dict is not provided and ValidationStringency = LENIENT
SAMRecordConverterSuite:
- testing the fields in an Alignment obtained from a mapped samRecord conversion
- testing the fields in an Alignment obtained from an unmapped samRecord conversion
- '*' quality gets nulled out
- don't keep denormalized fields
ADAMContextSuite:
- ctr is accessible
- load from an empty directory
- sc.loadParquet should not fail on unmapped reads
- sc.loadParquet should not load a file without a type specified
- can read a small .SAM file
- can read a small .SAM file with a bad header with lenient validation
- loading a sam file with a bad header and strict stringency should fail
- can read a small .CRAM file
- can read a small .SAM with all attribute tag types
- can filter a .SAM file based on quality
- Can convert to phred
- Can convert from phred
- Can read a .gtf file
- Can read a .bed file
- Can read a BED 12 file
- Can read a .narrowPeak file
- Can read a .interval_list file
2020-09-09 12:07:26 WARN  VariantContextConverter:190 - Saw invalid info field java.lang.IllegalArgumentException: Multivalued flags are not supported for INFO lines: INFO=<ID=ABADFLAG,Number=.,Type=Flag,Description="A no good, very bad flag.">. Ignoring...
2020-09-09 12:07:26 WARN  VariantContextConverter:190 - Generating field extractor from header line INFO=<ID=ABADFLAG,Number=.,Type=Flag,Description="A no good, very bad flag."> failed: java.lang.IllegalArgumentException: Multivalue flags are not supported for INFO lines: INFO=<ID=ABADFLAG,Number=.,Type=Flag,Description="A no good, very bad flag.">
- can read a small .vcf file with a validation issue
- can read a small .vcf file
2020-09-09 12:07:26 WARN  VCFInputFormat:218 - file:/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/2.12.8/test-classes/test.vcf.gz is not splittable, consider using block-compressed gzip (BGZF)
- can read a gzipped .vcf file
- can read a vcf file with an empty alt
- can read a BGZF gzipped .vcf file with .gz file extension
- can read a BGZF gzipped .vcf file with .bgz file extension
- can read a vcf file with a projection
- can read an uncompressed BCFv2.2 file !!! IGNORED !!!
- can read a BGZF compressed BCFv2.2 file !!! IGNORED !!!
- loadIndexedVcf with 1 ReferenceRegion
- loadIndexedVcf with multiple ReferenceRegions
- load block compressed interleaved fastq
- import records from interleaved FASTQ: 1
- import records from interleaved FASTQ: 2
- import records from interleaved FASTQ: 3
- import records from interleaved FASTQ: 4
- import block compressed single fastq
- import records from single ended FASTQ: 1
- import records from single ended FASTQ: 2
- import records from single ended FASTQ: 3
- import records from single ended FASTQ: 4
- filter on load using the filter2 API
- saveAsParquet with file path
- saveAsParquet with file path, block size, page size
- saveAsParquet with save args
- read a HLA fasta from GRCh38
- read a gzipped fasta file
- read a fasta file with comments, gaps, and translation stops
- loadIndexedBam with 1 ReferenceRegion
- loadIndexedBam with multiple ReferenceRegions
- loadIndexedBam with multiple ReferenceRegions and indexed bams
- loadIndexedBam with multiple ReferenceRegions and a directory of indexed bams
- loadIndexedBam should throw exception without an index file
- loadIndexedBam should work with indexed file with index naming format <filename>.bai
- loadIndexedBam glob should throw exception without an index file
- loadBam with a glob
- loadBam with a directory
- load vcf with a glob
- load vcf from a directory
- load gvcf which contains a multi-allelic row from a directory
- load and save gvcf which contains rows without likelihoods
- parse annotations for multi-allelic rows
- load parquet with globs
- bad glob should fail
- empty directory should fail
- can read a SnpEff-annotated .vcf file
- loadAlignments should not fail on single-end and paired-end fastq reads
- load queryname sorted sam as fragments
- load query grouped sam as fragments
- load paired fastq
- load paired fastq without cache
- load paired fastq as fragments
- load paired fastq as fragments without cache
- load HTSJDK sequence dictionary
- load Bedtools .genome file as sequence dictionary
- load Bedtools .genome.txt file as sequence dictionary
- load UCSC Genome Browser chromInfo.txt file as sequence dictionary
- load unrecognized file extension as sequence dictionary fails
- load BED features with Bedtools .genome file as sequence dictionary
- load BED features with Bedtools .genome file as sequence dictionary, no matching features
- convert program record
- load program record from sam file
- load alignments from data frame
- load features from data frame
- load fragments from data frame
- load genotypes from data frame with default header lines
- load genotypes from data frame with empty header lines
- load reads from data frame
- load sequences from data frame
- load slices from data frame
- load variant contexts from data frame with default header lines
- load variant contexts from data frame with empty header lines
- load variants from data frame with default header lines
- load variants from data frame with empty header lines
- load alignments with metadata from data frame
- load features with metadata from data frame
- load fragments with metadata from data frame
- load genotypes with metadata from data frame
- load variant contexts with metadata from data frame
- load variants with metadata from data frame
- read a fasta file with short sequences as sequences
- read a fasta file with long sequences as sequences
- read a fasta file with short sequences as slices
- read a fasta file with long sequences as slices
CycleCovariateSuite:
- compute covariates for an unpaired read on the negative strand
- compute covariates for a first-of-pair read on the negative strand
- compute covariates for a second-of-pair read on the negative strand
- compute covariates for an unpaired read on the positive strand
- compute covariates for a first-of-pair read on the positive strand
- compute covariates for a second-of-pair read on the positive strand
AlignmentConverterSuite:
- testing the fields in a converted ADAM Read
- converting a read with null quality is OK
- convert a read to fastq
- reverse complement reads when converting to fastq
- converting to fastq with unmapped reads where  read reverse complemented flag (Ox10) was NOT set
- converting to fastq with unmapped reads where reverse complemented flag (0x10) was set
- converting a fragment with no alignments should yield unaligned reads
- converting a fragment with alignments should restore the alignments
- read negative strand is propagated even when not mapped
ConsensusGeneratorFromKnownsSuite:
- no consensuses for empty target
- no consensuses for reads that don't overlap a target
- return a consensus for read overlapping a single target
RichCigarSuite:
- moving 2 bp from a deletion to a match operator
- moving 2 bp from a insertion to a match operator
- moving 1 base in a two element cigar
- move to start of read
- process right clipped cigar
- process left clipped cigar
- process cigar clipped on both ends
MDTaggingSuite:
- test adding MDTags over boundary
- test adding MDTags; reads span full contig
- test adding MDTags; reads start inside first fragment
- test adding MDTags; reads end inside last fragment
- test adding MDTags; reads start inside first fragment and end inside last fragment
- test adding MDTags; reads start and end in middle fragements
2020-09-09 12:08:43 WARN  BlockManager:69 - Putting block rdd_5_3 failed due to exception java.lang.Exception: Contig chr2 not found in reference map with keys: chr1.
2020-09-09 12:08:43 WARN  BlockManager:69 - Block rdd_5_3 could not be removed as it was not found on disk or in memory
2020-09-09 12:08:43 ERROR Executor:94 - Exception in task 3.0 in stage 2.0 (TID 11)
java.lang.Exception: Contig chr2 not found in reference map with keys: chr1
	at org.bdgenomics.adam.util.ReferenceContigMap.$anonfun$extract$1(ReferenceContigMap.scala:64)
	at scala.collection.immutable.Map$Map1.getOrElse(Map.scala:119)
	at org.bdgenomics.adam.util.ReferenceContigMap.extract(ReferenceContigMap.scala:63)
	at org.bdgenomics.adam.rdd.read.MDTagging.$anonfun$addMDTagsBroadcast$3(MDTagging.scala:76)
	at scala.Option$WithFilter.map(Option.scala:163)
	at org.bdgenomics.adam.rdd.read.MDTagging.$anonfun$addMDTagsBroadcast$1(MDTagging.scala:71)
	at scala.collection.Iterator$$anon$10.next(Iterator.scala:459)
	at org.apache.spark.storage.memory.MemoryStore.putIterator(MemoryStore.scala:222)
	at org.apache.spark.storage.memory.MemoryStore.putIteratorAsValues(MemoryStore.scala:299)
	at org.apache.spark.storage.BlockManager.$anonfun$doPutIterator$1(BlockManager.scala:1371)
	at org.apache.spark.storage.BlockManager.org$apache$spark$storage$BlockManager$$doPut(BlockManager.scala:1298)
	at org.apache.spark.storage.BlockManager.doPutIterator(BlockManager.scala:1362)
	at org.apache.spark.storage.BlockManager.getOrElseUpdate(BlockManager.scala:1186)
	at org.apache.spark.rdd.RDD.getOrCompute(RDD.scala:360)
	at org.apache.spark.rdd.RDD.iterator(RDD.scala:311)
	at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90)
	at org.apache.spark.scheduler.Task.run(Task.scala:127)
	at org.apache.spark.executor.Executor$TaskRunner.$anonfun$run$3(Executor.scala:446)
	at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1377)
	at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:449)
	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
	at java.lang.Thread.run(Thread.java:748)
2020-09-09 12:08:43 WARN  TaskSetManager:69 - Lost task 3.0 in stage 2.0 (TID 11, 192.168.10.27, executor driver): java.lang.Exception: Contig chr2 not found in reference map with keys: chr1
	at org.bdgenomics.adam.util.ReferenceContigMap.$anonfun$extract$1(ReferenceContigMap.scala:64)
	at scala.collection.immutable.Map$Map1.getOrElse(Map.scala:119)
	at org.bdgenomics.adam.util.ReferenceContigMap.extract(ReferenceContigMap.scala:63)
	at org.bdgenomics.adam.rdd.read.MDTagging.$anonfun$addMDTagsBroadcast$3(MDTagging.scala:76)
	at scala.Option$WithFilter.map(Option.scala:163)
	at org.bdgenomics.adam.rdd.read.MDTagging.$anonfun$addMDTagsBroadcast$1(MDTagging.scala:71)
	at scala.collection.Iterator$$anon$10.next(Iterator.scala:459)
	at org.apache.spark.storage.memory.MemoryStore.putIterator(MemoryStore.scala:222)
	at org.apache.spark.storage.memory.MemoryStore.putIteratorAsValues(MemoryStore.scala:299)
	at org.apache.spark.storage.BlockManager.$anonfun$doPutIterator$1(BlockManager.scala:1371)
	at org.apache.spark.storage.BlockManager.org$apache$spark$storage$BlockManager$$doPut(BlockManager.scala:1298)
	at org.apache.spark.storage.BlockManager.doPutIterator(BlockManager.scala:1362)
	at org.apache.spark.storage.BlockManager.getOrElseUpdate(BlockManager.scala:1186)
	at org.apache.spark.rdd.RDD.getOrCompute(RDD.scala:360)
	at org.apache.spark.rdd.RDD.iterator(RDD.scala:311)
	at org.apache.spark.scheduler.ResultTask.runTask(ResultTask.scala:90)
	at org.apache.spark.scheduler.Task.run(Task.scala:127)
	at org.apache.spark.executor.Executor$TaskRunner.$anonfun$run$3(Executor.scala:446)
	at org.apache.spark.util.Utils$.tryWithSafeFinally(Utils.scala:1377)
	at org.apache.spark.executor.Executor$TaskRunner.run(Executor.scala:449)
	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
	at java.lang.Thread.run(Thread.java:748)

2020-09-09 12:08:43 ERROR TaskSetManager:73 - Task 3 in stage 2.0 failed 1 times; aborting job
- try realigning a read on a missing contig, stringency == STRICT
2020-09-09 12:08:45 WARN  MDTagging:190 - Caught exception when processing read chr2: java.lang.Exception: Contig chr2 not found in reference map with keys: chr1
- try realigning a read on a missing contig, stringency == LENIENT
FileExtensionsSuite:
- ends in gzip extension
- is a vcf extension
PhredUtilsSuite:
- convert low phred score to log and back
- convert high phred score to log and back
- convert overflowing phred score to log and back and clip
- convert negative zero log probability to phred and clip
- round trip log probabilities
ReadDatasetSuite:
- create a new read genomic dataset
- create a new read genomic dataset with sequence dictionary
- save as parquet
- round trip as parquet
- save as fastq
- save as single file fastq
- filter read genomic dataset by reference region
- broadcast region join reads and features
- shuffle region join reads and features
- convert reads to alignments
- convert reads to sequences
- convert reads to slices
AlignmentDatasetSuite:
- sorting reads
- unmapped reads go at the end when sorting
- coverage does not fail on unmapped reads
- computes coverage
- computes coverage with multiple samples
- merges adjacent records with equal coverage values
- sorting reads by reference index
- round trip from ADAM to SAM and back to ADAM produces equivalent Read values
- round trip with single CRAM file produces equivalent Read values
- round trip with sharded CRAM file produces equivalent Read values
- SAM conversion sets read mapped flag properly
- load long FASTQ reads
- load FASTQ with no bases
- convert malformed FASTQ (no quality scores) => SAM => well-formed FASTQ => SAM
- round trip from ADAM to FASTQ and back to ADAM produces equivalent Read values
- round trip from ADAM to paired-FASTQ and back to ADAM produces equivalent Read values
- writing a small file with tags should produce the expected result
- writing a small sorted file as SAM should produce the expected result
- writing unordered sam from unordered sam
- writing ordered sam from unordered sam
- write single sam file back
- write single bam file back
- saveAsParquet with save args, sequence dictionary, and read group dictionary
- load parquet to sql, save, re-read from avro
- load from sam, save as partitioned parquet, and re-read from partitioned parquet
- save as SAM format
- save as sorted SAM format
- save as BAM format
- save as sorted BAM format
- save as FASTQ format
- save as ADAM parquet format
- saveAsSam SAM format
- saveAsSam SAM format single file
- saveAsSam sorted SAM format single file
- saveAsSam BAM format
- saveAsSam BAM format single file
- saveAsSam sorted BAM format single file
- saveAsFastq
- saveAsFastq as single file
- saveAsFastq with original base qualities
- saveAsFastq sorted by read name
- saveAsFastq sorted by read name with original base qualities
2020-09-09 12:10:19 WARN  RDDBoundAlignmentDataset:190 - Found 20 read names that don't occur exactly twice:
	1x:	20

Samples:
	simread:1:237728409:true
	simread:1:195211965:false
	simread:1:163841413:false
	simread:1:231911906:false
	simread:1:26472783:false
	simread:1:165341382:true
	simread:1:240344442:true
	simread:1:50683371:false
	simread:1:240997787:true
	simread:1:14397233:false
	simread:1:207027738:true
	simread:1:20101800:true
	simread:1:101556378:false
	simread:1:37577445:false
	simread:1:189606653:true
	simread:1:5469106:true
	simread:1:186794283:true
	simread:1:89554252:false
	simread:1:153978724:false
	simread:1:169801933:true
- saveAsFastq paired FASTQ
2020-09-09 12:10:22 WARN  RDDBoundAlignmentDataset:190 - Found 20 read names that don't occur exactly twice:
	1x:	20

Samples:
	simread:1:237728409:true
	simread:1:195211965:false
	simread:1:163841413:false
	simread:1:231911906:false
	simread:1:26472783:false
	simread:1:165341382:true
	simread:1:240344442:true
	simread:1:50683371:false
	simread:1:240997787:true
	simread:1:14397233:false
	simread:1:207027738:true
	simread:1:20101800:true
	simread:1:101556378:false
	simread:1:37577445:false
	simread:1:189606653:true
	simread:1:5469106:true
	simread:1:186794283:true
	simread:1:89554252:false
	simread:1:153978724:false
	simread:1:169801933:true
- saveAsPairedFastq
2020-09-09 12:10:23 WARN  RDDBoundAlignmentDataset:190 - Found 20 read names that don't occur exactly twice:
	1x:	20

Samples:
	simread:1:237728409:true
	simread:1:195211965:false
	simread:1:163841413:false
	simread:1:231911906:false
	simread:1:26472783:false
	simread:1:165341382:true
	simread:1:240344442:true
	simread:1:50683371:false
	simread:1:240997787:true
	simread:1:14397233:false
	simread:1:207027738:true
	simread:1:20101800:true
	simread:1:101556378:false
	simread:1:37577445:false
	simread:1:189606653:true
	simread:1:5469106:true
	simread:1:186794283:true
	simread:1:89554252:false
	simread:1:153978724:false
	simread:1:169801933:true
- saveAsPairedFastq as single files
- don't lose any reads when piping as SAM
2020-09-09 12:10:36 WARN  OutFormatterRunner:190 - Piped command List(sleep, 10) timed out after 5 seconds.
2020-09-09 12:10:36 WARN  OutFormatterRunner:190 - Piped command List(sleep, 10) timed out after 5 seconds.
- lose all records when a command times out
- lose no records without a timeout
2020-09-09 12:10:59 WARN  OutFormatterRunner:190 - Piped command List(python, /tmp/adamTestMvnFJdRuV3/spark-6a6de98f-f934-4ef2-b2ae-a6125711b535/userFiles-96fe0122-2cd4-4e50-a6de-49f66d630696/timeout.py) timed out after 5 seconds.
2020-09-09 12:10:59 WARN  OutFormatterRunner:190 - Piped command List(python, /tmp/adamTestMvnFJdRuV3/spark-6a6de98f-f934-4ef2-b2ae-a6125711b535/userFiles-96fe0122-2cd4-4e50-a6de-49f66d630696/timeout.py) timed out after 5 seconds.
- lose some records when a command times out
- don't lose any reads when piping as SAM using java pipe
- don't lose any reads when piping as BAM
- don't lose any reads when piping fastq to sam
- can properly set environment variables inside of a pipe
- read vcf from alignment pipe !!! IGNORED !!!
- use broadcast join to pull down reads mapped to targets
- use broadcast join against to pull down reads mapped to targets
- use right outer broadcast join to pull down reads mapped to targets
- use right outer broadcast join against to pull down reads mapped to targets
- use shuffle join with feature spanning partitions
- use shuffle join to pull down reads mapped to targets
- use shuffle join with flankSize to pull down reads mapped close to targets
- use right outer shuffle join to pull down reads mapped to targets
- use left outer shuffle join to pull down reads mapped to targets
- use full outer shuffle join to pull down reads mapped to targets
- use shuffle join with group by to pull down reads mapped to targets
- use right outer shuffle join with group by to pull down reads mapped to targets
- cannot provide empty quality score bins
- cannot provide bins with a gap
- cannot provide overlapping bins
- binning quality scores in reads succeeds even if reads have no quality scores
- bin quality scores in reads
- union two read files together
- test k-mer counter
- test dataset based k-mer counter
- transform reads to slice genomic dataset
- transform reads to coverage genomic dataset
- transform reads to feature genomic dataset
- transform reads to fragment genomic dataset
- transform reads to genotype genomic dataset
loading /tmp/adamTestMvnFJdRuV3/TempSuite5993335469970442510.adam as parquet into RDD...
loading /tmp/adamTestMvnFJdRuV3/TempSuite7530526881175904758.adam as parquet into RDD...
- transform reads to variant genomic dataset
- cannot have a null processing step ID
- convert a processing description to htsjdk
- GenomicDataset.sort does not fail on unmapped reads
- GenomicDataset.sortLexicographically does not fail on unmapped reads
- left normalize indels
2020-09-09 12:12:12 WARN  DAGScheduler:69 - Broadcasting large task binary with size 1134.2 KiB
- running base recalibration with downsampling doesn't drop reads
- filter RDD bound alignments by MAPQ
- filter dataset bound alignments by MAPQ
- filter RDD bound unaligned alignments
- filter dataset bound unaligned alignments
- filter RDD bound unpaired alignments
- filter dataset bound unpaired alignments
- filter RDD bound duplicate alignments
- filter dataset bound duplicate alignments
- filter RDD bound alignments to primary alignments
- filter dataset bound alignments to primary alignments
- filter RDD bound alignments to read group
- filter dataset bound alignments to read group
- filter RDD bound alignments to read groups
- filter dataset bound alignments to read groups
- filter RDD bound alignments to sample
- filter dataset bound alignments to sample
- filter RDD bound alignments to samples
- filter dataset bound alignments to samples
- sort by read name
- transform dataset via java API
- convert alignments to reads
SmithWatermanSuite:
- gather max position from simple scoring matrix
- gather max position from irregular scoring matrix
- gather max position from irregular scoring matrix with deletions
- score simple alignment with constant gap
- score irregular scoring matrix
- score irregular scoring matrix with indel
- can unroll cigars correctly
- execute simple trackback
- execute trackback with indel
- run end to end smith waterman for simple reads
- run end to end smith waterman for short sequences with indel
- run end to end smith waterman for longer sequences with snp
- run end to end smith waterman for longer sequences with short indel
- run end to end smith waterman for shorter sequence in longer sequence
- run end to end smith waterman for shorter sequence in longer sequence, with indel
- smithWaterman - simple alignment
MdTagSuite:
- null md tag
- zero length md tag
- md tag with non-digit initial value
- md tag invalid base
- md tag, pure insertion
- md tag, pure insertion, test 2
- md tag pure insertion equality
- md tag equality and hashcode
- valid md tags
- get start of read with no mismatches or deletions
- get start of read with no mismatches, but with a deletion at the start
- get start of read with mismatches at the start
- get end of read with no mismatches or deletions
- check that mdtag and rich record return same end
- get end of read with no mismatches, but a deletion at end
- CIGAR with N operator
- CIGAR with multiple N operators
- CIGAR with P operators
- Get correct matches for mdtag with insertion
- Get correct matches for mdtag with mismatches and insertion
- Get correct matches for mdtag with insertion between mismatches
- Get correct matches for mdtag with intron between mismatches
- Get correct matches for mdtag with intron and deletion between mismatches
- Throw exception when number of deleted bases in mdtag disagrees with CIGAR
- Get correct matches for mdtag with mismatch, insertion and deletion
- Get correct matches for mdtag with mismatches, insertion and deletion
- Get correct matches for MDTag with mismatches and deletions
- Get correct matches base from MDTag and CIGAR with N
- get end of read with mismatches and a deletion at end
- get correct string out of mdtag with no mismatches
- get correct string out of mdtag with mismatches at start
- get correct string out of mdtag with deletion at end
- get correct string out of mdtag with mismatches at end
- get correct string out of complex mdtag
- check complex mdtag
- get gapped reference
- move a cigar alignment by two for a read
- rewrite alignment to all matches
- rewrite alignment to two mismatches followed by all matches
- rewrite alignment to include a deletion but otherwise all matches
- rewrite alignment to include an insertion at the start of the read but otherwise all matches
- create new md tag from read vs. reference, perfect match
- create new md tag from read vs. reference, perfect alignment match, 1 mismatch
- create new md tag from read vs. reference, alignment with deletion
- create new md tag from read vs. reference, alignment with insert
- handle '=' and 'X' operators
- CIGAR/MD tag mismatch should cause errors
GenomicDatasetSuite:
- processing a command that is the spark root directory should return an absolute path
- processing a command that is just a single word should do nothing
- processing a command should handle arguments that include spaces
- processing a command that is a single substitution should succeed
- processing a command that is multiple words should split the string
- process a command that is multiple words with a replacement
- process a command that is multiple words with multiple replacements
ParallelFileMergerSuite:
- cannot write both empty gzip block and cram eof
- buffer size must be non-negative
- get the size of several files
- block size must be positive and non-zero when trying to merge files
- must provide files to merge
- if two files are both below the block size, they should merge into one shard
- merge two files where one is greater than the block size
- merge a sharded sam file
- merge a sharded bam file
- merge a sharded cram file
- can't turn a negative index into a path
- generate a path from an index
IndelTableSuite:
- check for indels in a region with known indels
- check for indels in a contig that doesn't exist
- check for indels in a region without known indels
- build indel table from rdd of variants
SnpTableSuite:
- create an empty snp table
- create a snp table from variants on multiple contigs
- create a snp table from a larger set of variants
- perform lookups on multi-contig snp table
- perform lookups on larger snp table
RealignIndelsSuite:
- map reads to targets
- checking mapping to targets for artificial reads
- checking alternative consensus for artificial reads
- checking extraction of reference from reads
- checking realigned reads for artificial input
- checking realigned reads for artificial input with reference file
- checking realigned reads for artificial input using knowns
- checking realigned reads for artificial input using knowns and reads
- skip realigning reads if target is highly covered
- skip realignment if target is an insufficient LOD improvement
- realign reads to an insertion
- test mismatch quality scoring
- test mismatch quality scoring for no mismatches
- test mismatch quality scoring for offset
- test mismatch quality scoring with early exit
- test mismatch quality scoring after unpacking read
- we shouldn't try to realign a region with no target
- we shouldn't try to realign reads with no indel evidence
- test OP and OC tags
- realign a read with an insertion that goes off the end of the read
- if realigning a target doesn't improve the LOD, don't drop reads
- extract seq/qual from a read with no clipped bases
- extract seq/qual from a read with clipped bases at start
- extract seq/qual from a read with clipped bases at end
- if unclip is selected, don't drop base when extracting from a read with clipped bases
- get cigar and coordinates for read that spans indel, no clipped bases
- get cigar and coordinates for read that spans deletion, clipped bases at start
- get cigar and coordinates for read that falls wholly before insertion
- get cigar and coordinates for read that falls wholly after insertion
- get cigar and coordinates for read that falls wholly after deletion
- get cigar and coordinates for read that partially spans insertion, no clipped bases
- get cigar and coordinates for read that partially spans insertion, clipped bases at end
- get cigar and coordinates for read that partially spans insertion, clipped bases both ends
BaseQualityRecalibrationSuite:
2020-09-09 12:13:04 WARN  DAGScheduler:69 - Broadcasting large task binary with size 1134.2 KiB
- BQSR Test Input #1 w/ VCF Sites without caching
2020-09-09 12:13:13 WARN  DAGScheduler:69 - Broadcasting large task binary with size 1134.2 KiB
- BQSR Test Input #1 w/ VCF Sites with caching
2020-09-09 12:13:19 WARN  DAGScheduler:69 - Broadcasting large task binary with size 1134.2 KiB
- BQSR Test Input #1 w/ VCF Sites with serialized caching
DinucCovariateSuite:
- computing dinucleotide pairs for a single base sequence should return (N,N)
- compute dinucleotide pairs for a string of all valid bases
- compute dinucleotide pairs for a string with an N
- compute covariates for a read on the negative strand
- compute covariates for a read on the positive strand
SequenceDictionarySuite:
- Convert from sam sequence record and back
- Convert from SAM sequence dictionary file (with extra fields)
- merge into existing dictionary
- Convert from SAM sequence dictionary and back
- Can retrieve sequence by name
- SequenceDictionary's with same single element are equal
- SequenceDictionary's with same two elements are equals
- SequenceDictionary's with different elements are unequal
- SequenceDictionaries with same elements in different order are compatible
- isCompatible tests equality on overlap
- The addition + works correctly
- The append operation ++ works correctly
- ContainsRefName works correctly for different string types
- Apply on name works correctly for different String types
- convert from sam sequence record and back
- convert from sam sequence dictionary and back
- conversion to sam sequence dictionary has correct sort order
- load sequence dictionary from VCF file
- empty sequence dictionary must be empty
- test filter to reference name
- test filter to reference names
- test filter to reference name by function
GenomicPositionPartitionerSuite:
- partitions the UNMAPPED ReferencePosition into the top partition
- if we do not have a contig for a record, we throw an IAE
- partitioning into N pieces on M total sequence length, where N > M, results in M partitions
- correctly partitions a single dummy sequence into two pieces
- correctly counts cumulative lengths
- correctly partitions positions across two dummy sequences
- test that we can range partition ADAMRecords
- test that we can range partition ADAMRecords indexed by sample
- test that simple partitioning works okay on a reasonable set of ADAMRecords
- test indexed ReferencePosition partitioning works on a set of indexed ADAMRecords
CoverageSuite:
- Convert to coverage from valid Feature
- Convert to coverage from valid Feature with sampleId
- Convert to coverage from Feature with null/empty contigName fails with correct error
- Convert to coverage from Feature with no start/end position fails with correct error
- Convert to coverage from Feature with no score fails with correct error
InnerTreeRegionJoinSuite:
- Ensure same reference regions get passed together
- Overlapping reference regions
- Multiple reference regions do not throw exception
VariantDatasetSuite:
- union two variant genomic datasets together
- round trip to parquet
- save and reload from partitioned parquet
- use broadcast join to pull down variants mapped to targets
- use right outer broadcast join to pull down variants mapped to targets
- use shuffle join to pull down variants mapped to targets
- use right outer shuffle join to pull down variants mapped to targets
- use left outer shuffle join to pull down variants mapped to targets
- use full outer shuffle join to pull down variants mapped to targets
- use shuffle join with group by to pull down variants mapped to targets
- use right outer shuffle join with group by to pull down variants mapped to targets
- convert back to variant contexts
- load parquet to sql, save, re-read from avro
2020-09-09 12:14:01 WARN  DatasetBoundSliceDataset:190 - Saving directly as Parquet from SQL. Options other than compression codec are ignored.
- transform variants to slice genomic dataset
- transform variants to coverage genomic dataset
- transform variants to feature genomic dataset
- transform variants to fragment genomic dataset
- transform variants to read genomic dataset
- transform variants to genotype genomic dataset
- transform variants to variant context genomic dataset
- filter RDD bound variants to filters passed
- filter dataset bound variants to filters passed
- filter RDD bound variants by quality
- filter dataset bound variants by quality
- filter RDD bound variants by read depth
- filter dataset bound variants by read depth
- filter RDD bound variants by reference read depth
2020-09-09 12:14:21 WARN  Utils:69 - Service 'sparkDriver' could not bind on port 51090. Attempting port 51091.
- filter dataset bound variants by reference read depth
- filter RDD bound single nucleotide variants
- filter dataset bound single nucleotide variants
- filter RDD bound multiple nucleotide variants
- filter dataset bound multiple nucleotide variants
- filter RDD bound indel variants
- filter dataset bound indel variants
- filter RDD bound variants to single nucleotide variants
- filter dataset bound variants to single nucleotide variants
- filter RDD bound variants to multiple nucleotide variants
- filter dataset bound variants to multiple nucleotide variants
- filter RDD bound variants to indel variants
- filter dataset bound variants to indel variants
- transform dataset via java API
Run completed in 9 minutes, 20 seconds.
Total number of tests run: 1175
Suites: completed 68, aborted 0
Tests: succeeded 1175, failed 0, canceled 0, ignored 5, pending 0
All tests passed.
[INFO] 
[INFO] <<< scoverage-maven-plugin:1.1.1:report (default-cli) < [scoverage]test @ adam-core-spark3_2.12 <<<
[INFO] 
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:report (default-cli) @ adam-core-spark3_2.12 ---
[INFO] Skipping SCoverage report generation
[INFO] 
[INFO] -------------< org.bdgenomics.adam:adam-apis-spark3_2.12 >--------------
[INFO] Building ADAM_2.12: APIs for Java, Python 0.33.0-SNAPSHOT          [5/7]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-apis-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-apis-spark3_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-apis-spark3_2.12 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-apis/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-apis-spark3_2.12 ---
[INFO] Modified 0 of 5 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-apis-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-apis/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-apis-spark3_2.12 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-apis/src/main/scala:-1: info: compiling
[INFO] Compiling 4 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-apis/target/2.12.8/classes at 1599678879811
[WARNING] warning: there was one deprecation warning (since 2.12.0); re-run with -deprecation for details
[WARNING] warning: there were two feature warnings; re-run with -feature for details
[WARNING] two warnings found
[INFO] prepare-compile in 0 s
[INFO] compile in 7 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-apis-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-apis-spark3_2.12 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-apis/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-apis-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 2 resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-apis-spark3_2.12 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-apis/src/test/java:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-apis/src/test/scala:-1: info: compiling
[INFO] Compiling 9 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-apis/target/2.12.8/test-classes at 1599678887532
[INFO] prepare-compile in 0 s
[INFO] compile in 4 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-apis-spark3_2.12 ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 8 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-apis/target/2.12.8/test-classes
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-apis-spark3_2.12 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-apis-spark3_2.12 ---
Discovery starting.
Discovery completed in 233 milliseconds.
Run starting. Expected test count is: 10
JavaADAMContextSuite:
2020-09-09 12:14:54 WARN  Utils:69 - Your hostname, research-jenkins-worker-07 resolves to a loopback address: 127.0.1.1; using 192.168.10.27 instead (on interface eth0)
2020-09-09 12:14:54 WARN  Utils:69 - Set SPARK_LOCAL_IP if you need to bind to another address
2020-09-09 12:14:54 WARN  NativeCodeLoader:62 - Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
- can read and write a small .SAM file
- loadIndexedBam with multiple ReferenceRegions
- can read and write a small .SAM file as fragments
- can read and write a small .bed file as features
- can read and write a small .bed file as coverage
- can read and write a small .vcf as genotypes
- can read and write a small .vcf as variants
- can read a two bit file
2020-09-09 12:15:04 WARN  RDDBoundSequenceDataset:190 - asSingleFile = true ignored when saving as Parquet.
- can read and write .fa as sequences
2020-09-09 12:15:05 WARN  RDDBoundSliceDataset:190 - asSingleFile = true ignored when saving as Parquet.
- can read and write .fa as slices
Run completed in 11 seconds, 793 milliseconds.
Total number of tests run: 10
Suites: completed 2, aborted 0
Tests: succeeded 10, failed 0, canceled 0, ignored 0, pending 0
All tests passed.
[INFO] 
[INFO] >>> scoverage-maven-plugin:1.1.1:report (default-cli) > [scoverage]test @ adam-apis-spark3_2.12 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-apis-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-apis-spark3_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-apis-spark3_2.12 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-apis/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-apis-spark3_2.12 ---
[INFO] Modified 0 of 5 .scala files
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:pre-compile (default-cli) @ adam-apis-spark3_2.12 ---
[WARNING] Skipping SCoverage execution - unsupported Scala version "2.12.8"
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-apis-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-apis/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-apis-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-apis-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:post-compile (default-cli) @ adam-apis-spark3_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-apis-spark3_2.12 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-apis/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-apis-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 2 resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-apis-spark3_2.12 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-apis/src/test/java:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-apis/src/test/scala:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-apis/target/generated-test-sources/test-annotations:-1: info: compiling
[INFO] Compiling 9 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-apis/target/2.12.8/test-classes at 1599678906741
[INFO] prepare-compile in 0 s
[INFO] compile in 5 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-apis-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-apis-spark3_2.12 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-apis-spark3_2.12 ---
Discovery starting.
Discovery completed in 212 milliseconds.
Run starting. Expected test count is: 10
JavaADAMContextSuite:
2020-09-09 12:15:13 WARN  Utils:69 - Your hostname, research-jenkins-worker-07 resolves to a loopback address: 127.0.1.1; using 192.168.10.27 instead (on interface eth0)
2020-09-09 12:15:13 WARN  Utils:69 - Set SPARK_LOCAL_IP if you need to bind to another address
2020-09-09 12:15:13 WARN  NativeCodeLoader:62 - Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
- can read and write a small .SAM file
- loadIndexedBam with multiple ReferenceRegions
- can read and write a small .SAM file as fragments
- can read and write a small .bed file as features
- can read and write a small .bed file as coverage
- can read and write a small .vcf as genotypes
- can read and write a small .vcf as variants
- can read a two bit file
2020-09-09 12:15:23 WARN  RDDBoundSequenceDataset:190 - asSingleFile = true ignored when saving as Parquet.
- can read and write .fa as sequences
2020-09-09 12:15:23 WARN  RDDBoundSliceDataset:190 - asSingleFile = true ignored when saving as Parquet.
- can read and write .fa as slices
Run completed in 11 seconds, 462 milliseconds.
Total number of tests run: 10
Suites: completed 2, aborted 0
Tests: succeeded 10, failed 0, canceled 0, ignored 0, pending 0
All tests passed.
[INFO] 
[INFO] <<< scoverage-maven-plugin:1.1.1:report (default-cli) < [scoverage]test @ adam-apis-spark3_2.12 <<<
[INFO] 
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:report (default-cli) @ adam-apis-spark3_2.12 ---
[INFO] Skipping SCoverage report generation
[INFO] 
[INFO] --------------< org.bdgenomics.adam:adam-cli-spark3_2.12 >--------------
[INFO] Building ADAM_2.12: CLI 0.33.0-SNAPSHOT                            [6/7]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-cli-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-cli-spark3_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:timestamp-property (timestamp-property) @ adam-cli-spark3_2.12 ---
[INFO] 
[INFO] --- git-commit-id-plugin:2.2.2:revision (default) @ adam-cli-spark3_2.12 ---
[INFO] 
[INFO] --- templating-maven-plugin:1.0.0:filter-sources (filter-src) @ adam-cli-spark3_2.12 ---
[INFO] Coping files with filtering to temporary directory.
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 1 resource
[INFO] Copied 1 files to output directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/target/generated-sources/java-templates
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/target/generated-sources/java-templates added.
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-cli-spark3_2.12 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-cli-spark3_2.12 ---
[INFO] Modified 0 of 29 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-cli-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-cli-spark3_2.12 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/target/generated-sources/java-templates:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/src/main/scala:-1: info: compiling
[INFO] Compiling 18 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/target/2.12.8/classes at 1599678926009
[WARNING] warning: there was one deprecation warning
[WARNING] warning: there was one deprecation warning (since 2.12.0)
[WARNING] warning: there were two deprecation warnings in total; re-run with -deprecation for details
[WARNING] three warnings found
[INFO] prepare-compile in 0 s
[INFO] compile in 8 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-cli-spark3_2.12 ---
[INFO] Changes detected - recompiling the module!
[INFO] Compiling 1 source file to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/target/2.12.8/classes
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-cli-spark3_2.12 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-cli-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 15 resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-cli-spark3_2.12 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/src/test/scala:-1: info: compiling
[INFO] Compiling 12 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/target/2.12.8/test-classes at 1599678935440
[INFO] prepare-compile in 0 s
[INFO] compile in 7 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-cli-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-cli-spark3_2.12 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-cli-spark3_2.12 ---
Discovery starting.
Discovery completed in 236 milliseconds.
Run starting. Expected test count is: 44
TransformFeaturesSuite:
2020-09-09 12:15:44 WARN  Utils:69 - Your hostname, research-jenkins-worker-07 resolves to a loopback address: 127.0.1.1; using 192.168.10.27 instead (on interface eth0)
2020-09-09 12:15:44 WARN  Utils:69 - Set SPARK_LOCAL_IP if you need to bind to another address
2020-09-09 12:15:44 WARN  NativeCodeLoader:62 - Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
- can convert a simple BED file
TransformVariantsSuite:
- save a file sorted by contig index
- save a lexicographically sorted file
ViewSuite:
- -f 0 -F 0 is a no-op
- no -f or -F args is a no-op
- -f 4: only unmapped reads
- -F 4: only mapped reads
- -f 4 -F 8: unmapped reads with mapped mates
- -f 12: unmapped reads with unmapped mates
- -g 12: reads that are unmapped or whose mate is unmapped
- -F 12: mapped reads with mapped mates
- -g 36: unmapped reads or reads with mate on negative strand
- -F 36: unmapped reads or reads with mate on negative strand
TransformFragmentsSuite:
- load queryname sorted sam and save as parquet
- cannot sort if not saving as sam
2020-09-09 12:15:56 WARN  TransformFragments:190 - If loading and saving as alignments, consider using TransformAlignments instead
- load reads as sam and save them sorted
- bin quality scores on reads
TransformGenotypesSuite:
- save a file sorted by contig index
- save a lexicographically sorted file
- transform VCF without nested annotations
- transform VCF with nested annotations
AboutSuite:
- template variables have been replaced
- templated values are not empty
CoverageSuite:
- correctly calculates coverage from small sam file
MergeShardsSuite:
- merge shards from unordered sam to unordered sam
- unordered sam to ordered sam
- merge sharded bam
- merge sharded cram
TransformAlignmentsSuite:
- unordered sam to unordered sam
- unordered sam to ordered sam
- unordered sam, to adam, to sam
- unordered sam, to adam, to ordered sam
- put quality scores into bins
- run region predicate
ADAMMainSuite:
- default command groups is non empty
- module provides default command groups
- inject default command groups when called via main
- command groups is empty when called via apply
- single command group
- add new command group to default command groups
- module restores default command groups when called via apply
- custom module with single command group
- custom module with new command group added to default command groups
Adam2FastqSuite:
2020-09-09 12:16:05 WARN  RDDBoundAlignmentDataset:190 - Found 16 read names that don't occur exactly twice:
	1x:	16

Samples:
	SRR062634.16445865
	SRR062634.9119161
	SRR062634.17190076
	SRR062634.17969132
	SRR062634.7301099
	SRR062634.2087100
	SRR062634.20911784
	SRR062634.16769670
	SRR062634.18958430
	SRR062634.12099057
	SRR062634.12606172
	SRR062634.14985224
	SRR062634.10448889
	SRR062634.4789722
	SRR062634.3203184
	SRR062634.17698657
- convert SAM to paired FASTQ
Run completed in 22 seconds, 823 milliseconds.
Total number of tests run: 44
Suites: completed 12, aborted 0
Tests: succeeded 44, failed 0, canceled 0, ignored 0, pending 0
All tests passed.
[INFO] 
[INFO] >>> scoverage-maven-plugin:1.1.1:report (default-cli) > [scoverage]test @ adam-cli-spark3_2.12 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-cli-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-cli-spark3_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:timestamp-property (timestamp-property) @ adam-cli-spark3_2.12 ---
[INFO] 
[INFO] --- git-commit-id-plugin:2.2.2:revision (default) @ adam-cli-spark3_2.12 ---
[INFO] 
[INFO] --- templating-maven-plugin:1.0.0:filter-sources (filter-src) @ adam-cli-spark3_2.12 ---
[INFO] Coping files with filtering to temporary directory.
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 1 resource
[INFO] No files needs to be copied to output directory. Up to date: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/target/generated-sources/java-templates
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/target/generated-sources/java-templates added.
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-cli-spark3_2.12 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-cli-spark3_2.12 ---
[INFO] Modified 0 of 29 .scala files
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:pre-compile (default-cli) @ adam-cli-spark3_2.12 ---
[WARNING] Skipping SCoverage execution - unsupported Scala version "2.12.8"
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-cli-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-cli-spark3_2.12 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/target/generated-sources/java-templates:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/src/main/scala:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/target/generated-sources/annotations:-1: info: compiling
[INFO] Compiling 18 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/target/2.12.8/classes at 1599678967792
[WARNING] warning: there was one deprecation warning
[WARNING] warning: there was one deprecation warning (since 2.12.0)
[WARNING] warning: there were two deprecation warnings in total; re-run with -deprecation for details
[WARNING] three warnings found
[INFO] prepare-compile in 0 s
[INFO] compile in 9 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-cli-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:post-compile (default-cli) @ adam-cli-spark3_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-cli-spark3_2.12 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-cli-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 15 resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-cli-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-cli-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-cli-spark3_2.12 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-cli-spark3_2.12 ---
Discovery starting.
Discovery completed in 230 milliseconds.
Run starting. Expected test count is: 44
TransformFeaturesSuite:
2020-09-09 12:16:18 WARN  Utils:69 - Your hostname, research-jenkins-worker-07 resolves to a loopback address: 127.0.1.1; using 192.168.10.27 instead (on interface eth0)
2020-09-09 12:16:18 WARN  Utils:69 - Set SPARK_LOCAL_IP if you need to bind to another address
2020-09-09 12:16:19 WARN  NativeCodeLoader:62 - Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
- can convert a simple BED file
TransformVariantsSuite:
- save a file sorted by contig index
- save a lexicographically sorted file
ViewSuite:
- -f 0 -F 0 is a no-op
- no -f or -F args is a no-op
- -f 4: only unmapped reads
- -F 4: only mapped reads
- -f 4 -F 8: unmapped reads with mapped mates
- -f 12: unmapped reads with unmapped mates
- -g 12: reads that are unmapped or whose mate is unmapped
- -F 12: mapped reads with mapped mates
- -g 36: unmapped reads or reads with mate on negative strand
- -F 36: unmapped reads or reads with mate on negative strand
TransformFragmentsSuite:
- load queryname sorted sam and save as parquet
- cannot sort if not saving as sam
2020-09-09 12:16:31 WARN  TransformFragments:190 - If loading and saving as alignments, consider using TransformAlignments instead
- load reads as sam and save them sorted
- bin quality scores on reads
TransformGenotypesSuite:
- save a file sorted by contig index
- save a lexicographically sorted file
- transform VCF without nested annotations
- transform VCF with nested annotations
AboutSuite:
- template variables have been replaced
- templated values are not empty
CoverageSuite:
- correctly calculates coverage from small sam file
MergeShardsSuite:
- merge shards from unordered sam to unordered sam
- unordered sam to ordered sam
- merge sharded bam
- merge sharded cram
TransformAlignmentsSuite:
- unordered sam to unordered sam
- unordered sam to ordered sam
- unordered sam, to adam, to sam
- unordered sam, to adam, to ordered sam
- put quality scores into bins
- run region predicate
ADAMMainSuite:
- default command groups is non empty
- module provides default command groups
- inject default command groups when called via main
- command groups is empty when called via apply
- single command group
- add new command group to default command groups
- module restores default command groups when called via apply
- custom module with single command group
- custom module with new command group added to default command groups
Adam2FastqSuite:
2020-09-09 12:16:40 WARN  RDDBoundAlignmentDataset:190 - Found 16 read names that don't occur exactly twice:
	1x:	16

Samples:
	SRR062634.16445865
	SRR062634.9119161
	SRR062634.17190076
	SRR062634.17969132
	SRR062634.7301099
	SRR062634.2087100
	SRR062634.20911784
	SRR062634.16769670
	SRR062634.18958430
	SRR062634.12099057
	SRR062634.12606172
	SRR062634.14985224
	SRR062634.10448889
	SRR062634.4789722
	SRR062634.3203184
	SRR062634.17698657
- convert SAM to paired FASTQ
Run completed in 23 seconds, 193 milliseconds.
Total number of tests run: 44
Suites: completed 12, aborted 0
Tests: succeeded 44, failed 0, canceled 0, ignored 0, pending 0
All tests passed.
[INFO] 
[INFO] <<< scoverage-maven-plugin:1.1.1:report (default-cli) < [scoverage]test @ adam-cli-spark3_2.12 <<<
[INFO] 
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:report (default-cli) @ adam-cli-spark3_2.12 ---
[INFO] Skipping SCoverage report generation
[INFO] 
[INFO] -----------< org.bdgenomics.adam:adam-assembly-spark3_2.12 >------------
[INFO] Building ADAM_2.12: Assembly 0.33.0-SNAPSHOT                       [7/7]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-assembly-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-assembly-spark3_2.12 ---
[INFO] 
[INFO] --- git-commit-id-plugin:2.2.2:revision (default) @ adam-assembly-spark3_2.12 ---
[INFO] 
[INFO] --- templating-maven-plugin:1.0.0:filter-sources (filter-src) @ adam-assembly-spark3_2.12 ---
[INFO] Request to add '/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-assembly/src/main/java-templates' folder. Not added since it does not exist.
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-assembly-spark3_2.12 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-assembly/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-assembly-spark3_2.12 ---
[INFO] Modified 0 of 1 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-assembly-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-assembly/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-assembly-spark3_2.12 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-assembly/src/main/scala:-1: info: compiling
[INFO] Compiling 1 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-assembly/target/2.12.8/classes at 1599679002181
[INFO] prepare-compile in 0 s
[INFO] compile in 2 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-assembly-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-assembly-spark3_2.12 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-assembly/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-assembly-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-assembly/src/test/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-assembly-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-assembly-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-assembly-spark3_2.12 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] >>> scoverage-maven-plugin:1.1.1:report (default-cli) > [scoverage]test @ adam-assembly-spark3_2.12 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-assembly-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-assembly-spark3_2.12 ---
[INFO] 
[INFO] --- git-commit-id-plugin:2.2.2:revision (default) @ adam-assembly-spark3_2.12 ---
[INFO] 
[INFO] --- templating-maven-plugin:1.0.0:filter-sources (filter-src) @ adam-assembly-spark3_2.12 ---
[INFO] Request to add '/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-assembly/src/main/java-templates' folder. Not added since it does not exist.
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-assembly-spark3_2.12 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-assembly/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-assembly-spark3_2.12 ---
[INFO] Modified 0 of 1 .scala files
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:pre-compile (default-cli) @ adam-assembly-spark3_2.12 ---
[WARNING] Skipping SCoverage execution - unsupported Scala version "2.12.8"
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-assembly-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-assembly/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-assembly-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-assembly-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:post-compile (default-cli) @ adam-assembly-spark3_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-assembly-spark3_2.12 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-assembly/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-assembly-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-assembly/src/test/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-assembly-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-assembly-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-assembly-spark3_2.12 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] <<< scoverage-maven-plugin:1.1.1:report (default-cli) < [scoverage]test @ adam-assembly-spark3_2.12 <<<
[INFO] 
[INFO] 
[INFO] --- scoverage-maven-plugin:1.1.1:report (default-cli) @ adam-assembly-spark3_2.12 ---
[INFO] [scoverage] Generating aggregated cobertura XML report...
[INFO] [scoverage] Generating aggregated scoverage XML report...
[INFO] [scoverage] Generating aggregated scoverage HTML report...
[INFO] Skipping SCoverage report generation
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary for ADAM_2.12 0.33.0-SNAPSHOT:
[INFO] 
[INFO] ADAM_2.12 .......................................... SUCCESS [ 12.590 s]
[INFO] ADAM_2.12: Shader workaround ....................... SUCCESS [  5.766 s]
[INFO] ADAM_2.12: Avro-to-Dataset codegen utils ........... SUCCESS [  6.756 s]
[INFO] ADAM_2.12: Core .................................... SUCCESS [19:50 min]
[INFO] ADAM_2.12: APIs for Java, Python ................... SUCCESS [ 45.461 s]
[INFO] ADAM_2.12: CLI ..................................... SUCCESS [01:17 min]
[INFO] ADAM_2.12: Assembly ................................ SUCCESS [  3.469 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESS
[INFO] ------------------------------------------------------------------------
[INFO] Total time:  22:22 min
[INFO] Finished at: 2020-09-09T12:16:45-07:00
[INFO] ------------------------------------------------------------------------

# if those pass, build the distribution package
mvn -U \
    -P distribution \
    package \
    -DskipTests \
    -Dhadoop.version=${HADOOP_VERSION} \
    -DargLine=${ADAM_MVN_TMP_DIR}
+ mvn -U -P distribution package -DskipTests -Dhadoop.version=2.7.5 -DargLine=/tmp/adamTestMvnFJdRuV3
Java HotSpot(TM) 64-Bit Server VM warning: ignoring option MaxPermSize=1g; support was removed in 8.0
[INFO] Scanning for projects...
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Build Order:
[INFO] 
[INFO] ADAM_2.12                                                          [pom]
[INFO] ADAM_2.12: Shader workaround                                       [jar]
[INFO] ADAM_2.12: Avro-to-Dataset codegen utils                           [jar]
[INFO] ADAM_2.12: Core                                                    [jar]
[INFO] ADAM_2.12: APIs for Java, Python                                   [jar]
[INFO] ADAM_2.12: CLI                                                     [jar]
[INFO] ADAM_2.12: Assembly                                                [jar]
[INFO] ADAM_2.12: Distribution                                            [pom]
[INFO] 
[INFO] ------------< org.bdgenomics.adam:adam-parent-spark3_2.12 >-------------
[INFO] Building ADAM_2.12 0.33.0-SNAPSHOT                                 [1/8]
[INFO] --------------------------------[ pom ]---------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-parent-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-parent-spark3_2.12 ---
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-parent-spark3_2.12 ---
[INFO] Modified 0 of 244 .scala files
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-parent-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-parent-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-source-plugin:3.0.1:jar-no-fork (attach-sources) @ adam-parent-spark3_2.12 ---
[INFO] 
[INFO] --- maven-javadoc-plugin:3.1.0:jar (attach-javadoc) @ adam-parent-spark3_2.12 ---
[INFO] 
[INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ adam-parent-spark3_2.12 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-parent-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-parent-spark3_2.12 ---
[INFO] 
[INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ adam-parent-spark3_2.12 <<<
[INFO] 
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ adam-parent-spark3_2.12 ---
[INFO] No source files found
[INFO] 
[INFO] -------------< org.bdgenomics.adam:adam-shade-spark3_2.12 >-------------
[INFO] Building ADAM_2.12: Shader workaround 0.33.0-SNAPSHOT              [2/8]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-shade-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-shade-spark3_2.12 ---
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-shade-spark3_2.12 ---
[INFO] Modified 0 of 0 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-shade-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-shade/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-shade-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-shade-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- plexus-component-metadata:1.5.5:generate-metadata (default) @ adam-shade-spark3_2.12 ---
[INFO] Discovered 1 component descriptors(s)
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-shade-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-shade/src/test/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-shade-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-shade-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-shade-spark3_2.12 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ adam-shade-spark3_2.12 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-shade/target/adam-shade-spark3_2.12-0.33.0-SNAPSHOT.jar
[INFO] 
[INFO] --- maven-source-plugin:3.0.1:jar-no-fork (attach-sources) @ adam-shade-spark3_2.12 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-shade/target/adam-shade-spark3_2.12-0.33.0-SNAPSHOT-sources.jar
[INFO] 
[INFO] --- maven-javadoc-plugin:3.1.0:jar (attach-javadoc) @ adam-shade-spark3_2.12 ---
[INFO] 
Loading source files for package org.bdgenomics.adam.shade...
Constructing Javadoc information...
Standard Doclet version 1.8.0_191
Building tree for all the packages and classes...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-shade/target/apidocs/org/bdgenomics/adam/shade/ParquetAvroWorkaroundShader.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-shade/target/apidocs/org/bdgenomics/adam/shade/package-frame.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-shade/target/apidocs/org/bdgenomics/adam/shade/package-summary.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-shade/target/apidocs/org/bdgenomics/adam/shade/package-tree.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-shade/target/apidocs/constant-values.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-shade/target/apidocs/org/bdgenomics/adam/shade/class-use/ParquetAvroWorkaroundShader.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-shade/target/apidocs/org/bdgenomics/adam/shade/package-use.html...
Building index for all the packages and classes...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-shade/target/apidocs/overview-tree.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-shade/target/apidocs/index-all.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-shade/target/apidocs/deprecated-list.html...
Building index for all classes...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-shade/target/apidocs/allclasses-frame.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-shade/target/apidocs/allclasses-noframe.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-shade/target/apidocs/index.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-shade/target/apidocs/help-doc.html...
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-shade/target/adam-shade-spark3_2.12-0.33.0-SNAPSHOT-javadoc.jar
[INFO] 
[INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ adam-shade-spark3_2.12 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-shade-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-shade-spark3_2.12 ---
[INFO] 
[INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ adam-shade-spark3_2.12 <<<
[INFO] 
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ adam-shade-spark3_2.12 ---
model contains 6 documentable templates
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-shade/target/adam-shade-spark3_2.12-0.33.0-SNAPSHOT-javadoc.jar
[INFO] 
[INFO] ------------< org.bdgenomics.adam:adam-codegen-spark3_2.12 >------------
[INFO] Building ADAM_2.12: Avro-to-Dataset codegen utils 0.33.0-SNAPSHOT  [3/8]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-codegen-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-codegen-spark3_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-codegen-spark3_2.12 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-codegen/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-codegen-spark3_2.12 ---
[INFO] Modified 0 of 4 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-codegen-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-codegen/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-codegen-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-codegen-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-codegen-spark3_2.12 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-codegen/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-codegen-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-codegen/src/test/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-codegen-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-codegen-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-codegen-spark3_2.12 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-codegen-spark3_2.12 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ adam-codegen-spark3_2.12 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-codegen/target/adam-codegen-spark3_2.12-0.33.0-SNAPSHOT.jar
[INFO] 
[INFO] --- maven-source-plugin:3.0.1:jar-no-fork (attach-sources) @ adam-codegen-spark3_2.12 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-codegen/target/adam-codegen-spark3_2.12-0.33.0-SNAPSHOT-sources.jar
[INFO] 
[INFO] --- maven-javadoc-plugin:3.1.0:jar (attach-javadoc) @ adam-codegen-spark3_2.12 ---
[INFO] 
[INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ adam-codegen-spark3_2.12 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-codegen-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-codegen-spark3_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-codegen-spark3_2.12 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-codegen/src/main/scala added.
[INFO] 
[INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ adam-codegen-spark3_2.12 <<<
[INFO] 
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ adam-codegen-spark3_2.12 ---
model contains 11 documentable templates
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-codegen/target/adam-codegen-spark3_2.12-0.33.0-SNAPSHOT-javadoc.jar
[INFO] 
[INFO] -------------< org.bdgenomics.adam:adam-core-spark3_2.12 >--------------
[INFO] Building ADAM_2.12: Core 0.33.0-SNAPSHOT                           [4/8]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-core-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-core-spark3_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-core-spark3_2.12 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/main/scala added.
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/generated-sources/src/main/scala added.
[INFO] 
[INFO] --- exec-maven-plugin:1.5.0:java (generate-scala-products) @ adam-core-spark3_2.12 ---
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] 
[INFO] --- exec-maven-plugin:1.5.0:java (generate-scala-projection-fields) @ adam-core-spark3_2.12 ---
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-core-spark3_2.12 ---
[INFO] Modified 2 of 204 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-core-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-core-spark3_2.12 ---
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/main/java:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/main/scala:-1: info: compiling
[INFO] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/generated-sources/src/main/scala:-1: info: compiling
[INFO] Compiling 140 source files to /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/2.12.8/classes at 1599679032338
[WARNING] warning: there were 21 deprecation warnings
[WARNING] warning: there were 31 deprecation warnings (since 0.21.0)
[WARNING] warning: there was one deprecation warning (since 1.0.6)
[WARNING] warning: there was one deprecation warning (since 2.11.0)
[WARNING] warning: there were 175 deprecation warnings (since 2.12.0)
[WARNING] warning: there was one deprecation warning (since 2.12.7)
[WARNING] warning: there were 230 deprecation warnings in total; re-run with -deprecation for details
[WARNING] warning: there were 5 feature warnings; re-run with -feature for details
[WARNING] 8 warnings found
[INFO] prepare-compile in 0 s
[INFO] compile in 30 s
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-core-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-core-spark3_2.12 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-core-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 152 resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-core-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-core-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-core-spark3_2.12 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-core-spark3_2.12 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ adam-core-spark3_2.12 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/adam-core-spark3_2.12-0.33.0-SNAPSHOT.jar
[INFO] 
[INFO] --- maven-source-plugin:3.0.1:jar-no-fork (attach-sources) @ adam-core-spark3_2.12 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/adam-core-spark3_2.12-0.33.0-SNAPSHOT-sources.jar
[INFO] 
[INFO] --- maven-javadoc-plugin:3.1.0:jar (attach-javadoc) @ adam-core-spark3_2.12 ---
[INFO] The goal 'org.apache.maven.plugins:maven-javadoc-plugin:3.1.0:javadoc' has not been previously called for the module: 'org.bdgenomics.adam:adam-codegen-spark3_2.12:jar:0.33.0-SNAPSHOT'. Trying to invoke it...
Java HotSpot(TM) 64-Bit Server VM warning: ignoring option MaxPermSize=1g; support was removed in 8.0
[WARNING] Creating fake javadoc directory to prevent repeated invocations: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-codegen/target/apidocs
[ERROR] Error fetching link: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-codegen/target/apidocs. Ignored it.
[INFO] 
Loading source files for package org.apache.parquet.avro...
Loading source files for package org.bdgenomics.adam.io...
Constructing Javadoc information...
Standard Doclet version 1.8.0_191
Building tree for all the packages and classes...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/apidocs/org/apache/parquet/avro/AvroSchemaConverter.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/FastqInputFormat.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/FastqRecordReader.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/InterleavedFastqInputFormat.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/SingleFastqInputFormat.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/apidocs/overview-frame.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/apidocs/org/apache/parquet/avro/package-frame.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/apidocs/org/apache/parquet/avro/package-summary.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/apidocs/org/apache/parquet/avro/package-tree.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/package-frame.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/package-summary.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/package-tree.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/apidocs/constant-values.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/apidocs/org/apache/parquet/avro/class-use/AvroSchemaConverter.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/class-use/InterleavedFastqInputFormat.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/class-use/SingleFastqInputFormat.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/class-use/FastqInputFormat.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/class-use/FastqRecordReader.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/apidocs/org/apache/parquet/avro/package-use.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/apidocs/org/bdgenomics/adam/io/package-use.html...
Building index for all the packages and classes...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/apidocs/overview-tree.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/apidocs/index-all.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/apidocs/deprecated-list.html...
Building index for all classes...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/apidocs/allclasses-frame.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/apidocs/allclasses-noframe.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/apidocs/index.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/apidocs/overview-summary.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/apidocs/help-doc.html...
6 warnings
[WARNING] Javadoc Warnings
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/main/java/org/bdgenomics/adam/io/FastqRecordReader.java:235: warning: no @param for codec
[WARNING] protected final int positionAtFirstRecord(final FSDataInputStream stream,
[WARNING] ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/main/java/org/bdgenomics/adam/io/FastqRecordReader.java:235: warning: no @return
[WARNING] protected final int positionAtFirstRecord(final FSDataInputStream stream,
[WARNING] ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/main/java/org/bdgenomics/adam/io/FastqRecordReader.java:235: warning: no @throws for java.io.IOException
[WARNING] protected final int positionAtFirstRecord(final FSDataInputStream stream,
[WARNING] ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/main/java/org/bdgenomics/adam/io/FastqRecordReader.java:389: warning: no @throws for java.io.IOException
[WARNING] protected final boolean lowLevelFastqRead(final Text readName, final Text value)
[WARNING] ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/main/java/org/bdgenomics/adam/io/FastqRecordReader.java:431: warning: no @throws for java.io.IOException
[WARNING] abstract protected boolean next(Text value) throws IOException;
[WARNING] ^
[WARNING] /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/main/java/org/bdgenomics/adam/io/FastqRecordReader.java:154: warning: no @throws for java.io.IOException
[WARNING] protected FastqRecordReader(final Configuration conf,
[WARNING] ^
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/adam-core-spark3_2.12-0.33.0-SNAPSHOT-javadoc.jar
[INFO] 
[INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ adam-core-spark3_2.12 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-core-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-core-spark3_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-core-spark3_2.12 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/main/scala added.
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/generated-sources/src/main/scala added.
[INFO] 
[INFO] --- exec-maven-plugin:1.5.0:java (generate-scala-products) @ adam-core-spark3_2.12 ---
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] 
[INFO] --- exec-maven-plugin:1.5.0:java (generate-scala-projection-fields) @ adam-core-spark3_2.12 ---
SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder".
SLF4J: Defaulting to no-operation (NOP) logger implementation
SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details.
[INFO] 
[INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ adam-core-spark3_2.12 <<<
[INFO] 
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ adam-core-spark3_2.12 ---
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/converters/FastaConverters.scala:274: warning: discarding unmoored doc comment
    /**
    ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/read/AlignmentDataset.scala:840: warning: Octal escape literals are deprecated, use \u0001 instead.
      binaryCodec.writeBytes("BAM\001".getBytes())
                                 ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rich/RichCigar.scala:43: warning: discarding unmoored doc comment
    /**
    ^
warning: there were 5 feature warnings; re-run with -feature for details
model contains 283 documentable templates
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/models/ReadGroupDictionary.scala:47: warning: Could not find any member to link for "IllegalArgumentException".
/**
^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/util/AttributeUtils.scala:70: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicDataset.scala:747: warning: Variable x undefined in comment for method pipe in trait GenomicDataset
   * Files are substituted in to the command with a $x syntax. E.g., to invoke
                                                     ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicDataset.scala:748: warning: Variable 0 undefined in comment for method pipe in trait GenomicDataset
   * a command that uses the first file from the files Seq, use $0. To access
                                                                 ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicDataset.scala:749: warning: Variable root undefined in comment for method pipe in trait GenomicDataset
   * the path to the directory where the files are copied, use $root.
                                                                ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicPartitioners.scala:178: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/GenomicPartitioners.scala:75: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala:3464: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala:1859: warning: Could not find any member to link for "FileNotFoundException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala:1839: warning: Could not find any member to link for "FileNotFoundException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/rdd/ADAMContext.scala:1810: warning: Could not find any member to link for "FileNotFoundException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/projections/Projection.scala:45: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala:474: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala:444: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala:429: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala:354: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala:258: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/models/ReferenceRegion.scala:242: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/main/scala/org/bdgenomics/adam/models/Alphabet.scala:44: warning: Could not find any member to link for "IllegalArgumentException".
  /**
  ^
/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/src/main/java/org/bdgenomics/adam/io/FastqRecordReader.java:377: warning: Could not find any member to link for "RuntimeException".
    /**
    ^
24 warnings found
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/adam-core-spark3_2.12-0.33.0-SNAPSHOT-javadoc.jar
[INFO] 
[INFO] --- maven-jar-plugin:3.2.0:test-jar (default) @ adam-core-spark3_2.12 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-core/target/adam-core-spark3_2.12-0.33.0-SNAPSHOT-tests.jar
[INFO] 
[INFO] -------------< org.bdgenomics.adam:adam-apis-spark3_2.12 >--------------
[INFO] Building ADAM_2.12: APIs for Java, Python 0.33.0-SNAPSHOT          [5/8]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-apis-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-apis-spark3_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-apis-spark3_2.12 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-apis/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-apis-spark3_2.12 ---
[INFO] Modified 0 of 5 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-apis-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-apis/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-apis-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-apis-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-apis-spark3_2.12 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-apis/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-apis-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 2 resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-apis-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-apis-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-apis-spark3_2.12 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-apis-spark3_2.12 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ adam-apis-spark3_2.12 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-apis/target/adam-apis-spark3_2.12-0.33.0-SNAPSHOT.jar
[INFO] 
[INFO] --- maven-source-plugin:3.0.1:jar-no-fork (attach-sources) @ adam-apis-spark3_2.12 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-apis/target/adam-apis-spark3_2.12-0.33.0-SNAPSHOT-sources.jar
[INFO] 
[INFO] --- maven-javadoc-plugin:3.1.0:jar (attach-javadoc) @ adam-apis-spark3_2.12 ---
[INFO] 
[INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ adam-apis-spark3_2.12 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-apis-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-apis-spark3_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-apis-spark3_2.12 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-apis/src/main/scala added.
[INFO] 
[INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ adam-apis-spark3_2.12 <<<
[INFO] 
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ adam-apis-spark3_2.12 ---
warning: there were two feature warnings; re-run with -feature for details
model contains 192 documentable templates
one warning found
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-apis/target/adam-apis-spark3_2.12-0.33.0-SNAPSHOT-javadoc.jar
[INFO] 
[INFO] --- maven-jar-plugin:3.2.0:test-jar (default) @ adam-apis-spark3_2.12 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-apis/target/adam-apis-spark3_2.12-0.33.0-SNAPSHOT-tests.jar
[INFO] 
[INFO] --------------< org.bdgenomics.adam:adam-cli-spark3_2.12 >--------------
[INFO] Building ADAM_2.12: CLI 0.33.0-SNAPSHOT                            [6/8]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-cli-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-cli-spark3_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:timestamp-property (timestamp-property) @ adam-cli-spark3_2.12 ---
[INFO] 
[INFO] --- git-commit-id-plugin:2.2.2:revision (default) @ adam-cli-spark3_2.12 ---
[INFO] 
[INFO] --- templating-maven-plugin:1.0.0:filter-sources (filter-src) @ adam-cli-spark3_2.12 ---
[INFO] Coping files with filtering to temporary directory.
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 1 resource
[INFO] No files needs to be copied to output directory. Up to date: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/target/generated-sources/java-templates
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/target/generated-sources/java-templates added.
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-cli-spark3_2.12 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-cli-spark3_2.12 ---
[INFO] Modified 0 of 29 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-cli-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-cli-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-cli-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-cli-spark3_2.12 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-cli-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 15 resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-cli-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-cli-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-cli-spark3_2.12 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- scalatest-maven-plugin:2.0.0:test (test) @ adam-cli-spark3_2.12 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ adam-cli-spark3_2.12 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/target/adam-cli-spark3_2.12-0.33.0-SNAPSHOT.jar
[INFO] 
[INFO] --- maven-source-plugin:3.0.1:jar-no-fork (attach-sources) @ adam-cli-spark3_2.12 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/target/adam-cli-spark3_2.12-0.33.0-SNAPSHOT-sources.jar
[INFO] 
[INFO] --- maven-javadoc-plugin:3.1.0:jar (attach-javadoc) @ adam-cli-spark3_2.12 ---
[INFO] The goal 'org.apache.maven.plugins:maven-javadoc-plugin:3.1.0:javadoc' has not been previously called for the module: 'org.bdgenomics.adam:adam-apis-spark3_2.12:jar:0.33.0-SNAPSHOT'. Trying to invoke it...
Java HotSpot(TM) 64-Bit Server VM warning: ignoring option MaxPermSize=1g; support was removed in 8.0
[WARNING] Creating fake javadoc directory to prevent repeated invocations: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-apis/target/apidocs
[ERROR] Error fetching link: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-apis/target/apidocs. Ignored it.
[INFO] 
Loading source files for package org.bdgenomics.adam.cli...
Constructing Javadoc information...
Standard Doclet version 1.8.0_191
Building tree for all the packages and classes...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/target/apidocs/org/bdgenomics/adam/cli/About.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/target/apidocs/org/bdgenomics/adam/cli/package-frame.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/target/apidocs/org/bdgenomics/adam/cli/package-summary.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/target/apidocs/org/bdgenomics/adam/cli/package-tree.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/target/apidocs/constant-values.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/target/apidocs/org/bdgenomics/adam/cli/class-use/About.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/target/apidocs/org/bdgenomics/adam/cli/package-use.html...
Building index for all the packages and classes...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/target/apidocs/overview-tree.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/target/apidocs/index-all.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/target/apidocs/deprecated-list.html...
Building index for all classes...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/target/apidocs/allclasses-frame.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/target/apidocs/allclasses-noframe.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/target/apidocs/index.html...
Generating /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/target/apidocs/help-doc.html...
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/target/adam-cli-spark3_2.12-0.33.0-SNAPSHOT-javadoc.jar
[INFO] 
[INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ adam-cli-spark3_2.12 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-cli-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-cli-spark3_2.12 ---
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:timestamp-property (timestamp-property) @ adam-cli-spark3_2.12 ---
[INFO] 
[INFO] --- git-commit-id-plugin:2.2.2:revision (default) @ adam-cli-spark3_2.12 ---
[INFO] 
[INFO] --- templating-maven-plugin:1.0.0:filter-sources (filter-src) @ adam-cli-spark3_2.12 ---
[INFO] Coping files with filtering to temporary directory.
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] Copying 1 resource
[INFO] No files needs to be copied to output directory. Up to date: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/target/generated-sources/java-templates
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/target/generated-sources/java-templates added.
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-cli-spark3_2.12 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/src/main/scala added.
[INFO] 
[INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ adam-cli-spark3_2.12 <<<
[INFO] 
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ adam-cli-spark3_2.12 ---
model contains 55 documentable templates
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-cli/target/adam-cli-spark3_2.12-0.33.0-SNAPSHOT-javadoc.jar
[INFO] 
[INFO] -----------< org.bdgenomics.adam:adam-assembly-spark3_2.12 >------------
[INFO] Building ADAM_2.12: Assembly 0.33.0-SNAPSHOT                       [7/8]
[INFO] --------------------------------[ jar ]---------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-assembly-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-assembly-spark3_2.12 ---
[INFO] 
[INFO] --- git-commit-id-plugin:2.2.2:revision (default) @ adam-assembly-spark3_2.12 ---
[INFO] 
[INFO] --- templating-maven-plugin:1.0.0:filter-sources (filter-src) @ adam-assembly-spark3_2.12 ---
[INFO] Request to add '/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-assembly/src/main/java-templates' folder. Not added since it does not exist.
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-assembly-spark3_2.12 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-assembly/src/main/scala added.
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-assembly-spark3_2.12 ---
[INFO] Modified 0 of 1 .scala files
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:resources (default-resources) @ adam-assembly-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-assembly/src/main/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-assembly-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:compile (default-compile) @ adam-assembly-spark3_2.12 ---
[INFO] Nothing to compile - all classes are up to date
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-test-source (add-test-source) @ adam-assembly-spark3_2.12 ---
[INFO] Test Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-assembly/src/test/scala added.
[INFO] 
[INFO] --- maven-resources-plugin:3.1.0:testResources (default-testResources) @ adam-assembly-spark3_2.12 ---
[INFO] Using 'UTF-8' encoding to copy filtered resources.
[INFO] skip non existing resourceDirectory /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-assembly/src/test/resources
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-assembly-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-compiler-plugin:3.8.0:testCompile (default-testCompile) @ adam-assembly-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-surefire-plugin:3.0.0-M3:test (default-test) @ adam-assembly-spark3_2.12 ---
[INFO] Tests are skipped.
[INFO] 
[INFO] --- maven-jar-plugin:3.2.0:jar (default-jar) @ adam-assembly-spark3_2.12 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-assembly/target/adam-assembly-spark3_2.12-0.33.0-SNAPSHOT.jar
[INFO] 
[INFO] --- maven-source-plugin:3.0.1:jar-no-fork (attach-sources) @ adam-assembly-spark3_2.12 ---
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-assembly/target/adam-assembly-spark3_2.12-0.33.0-SNAPSHOT-sources.jar
[INFO] 
[INFO] --- maven-javadoc-plugin:3.1.0:jar (attach-javadoc) @ adam-assembly-spark3_2.12 ---
[INFO] 
[INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ adam-assembly-spark3_2.12 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-assembly-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-assembly-spark3_2.12 ---
[INFO] 
[INFO] --- git-commit-id-plugin:2.2.2:revision (default) @ adam-assembly-spark3_2.12 ---
[INFO] 
[INFO] --- templating-maven-plugin:1.0.0:filter-sources (filter-src) @ adam-assembly-spark3_2.12 ---
[INFO] Request to add '/home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-assembly/src/main/java-templates' folder. Not added since it does not exist.
[INFO] 
[INFO] --- build-helper-maven-plugin:3.0.0:add-source (add-source) @ adam-assembly-spark3_2.12 ---
[INFO] Source directory: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-assembly/src/main/scala added.
[INFO] 
[INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ adam-assembly-spark3_2.12 <<<
[INFO] 
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ adam-assembly-spark3_2.12 ---
model contains 6 documentable templates
[INFO] Building jar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-assembly/target/adam-assembly-spark3_2.12-0.33.0-SNAPSHOT-javadoc.jar
[INFO] 
[INFO] --- maven-shade-plugin:3.2.0:shade (default) @ adam-assembly-spark3_2.12 ---
[INFO] Including org.bdgenomics.adam:adam-cli-spark3_2.12:jar:0.33.0-SNAPSHOT in the shaded jar.
[INFO] Including org.bdgenomics.utils:utils-misc-spark3_2.12:jar:0.3.0 in the shaded jar.
[INFO] Including org.bdgenomics.utils:utils-io-spark3_2.12:jar:0.3.0 in the shaded jar.
[INFO] Including org.apache.httpcomponents:httpclient:jar:4.5.7 in the shaded jar.
[INFO] Including org.apache.httpcomponents:httpcore:jar:4.4.11 in the shaded jar.
[INFO] Including commons-logging:commons-logging:jar:1.2 in the shaded jar.
[INFO] Including commons-codec:commons-codec:jar:1.11 in the shaded jar.
[INFO] Including org.bdgenomics.utils:utils-cli-spark3_2.12:jar:0.3.0 in the shaded jar.
[INFO] Including org.clapper:grizzled-slf4j_2.12:jar:1.3.4 in the shaded jar.
[INFO] Including org.slf4j:slf4j-api:jar:1.7.30 in the shaded jar.
[INFO] Including org.apache.parquet:parquet-avro:jar:1.10.1 in the shaded jar.
[INFO] Including org.apache.parquet:parquet-column:jar:1.10.1 in the shaded jar.
[INFO] Including org.apache.parquet:parquet-common:jar:1.10.1 in the shaded jar.
[INFO] Including org.apache.parquet:parquet-encoding:jar:1.10.1 in the shaded jar.
[INFO] Including org.apache.parquet:parquet-hadoop:jar:1.10.1 in the shaded jar.
[INFO] Including org.apache.parquet:parquet-jackson:jar:1.10.1 in the shaded jar.
[INFO] Including commons-pool:commons-pool:jar:1.6 in the shaded jar.
[INFO] Including org.apache.parquet:parquet-format:jar:2.4.0 in the shaded jar.
[INFO] Including org.bdgenomics.bdg-formats:bdg-formats:jar:0.15.0 in the shaded jar.
[INFO] Including org.apache.avro:avro:jar:1.8.2 in the shaded jar.
[INFO] Including org.codehaus.jackson:jackson-core-asl:jar:1.9.13 in the shaded jar.
[INFO] Including org.codehaus.jackson:jackson-mapper-asl:jar:1.9.13 in the shaded jar.
[INFO] Including com.thoughtworks.paranamer:paranamer:jar:2.8 in the shaded jar.
[INFO] Including org.xerial.snappy:snappy-java:jar:1.1.1.3 in the shaded jar.
[INFO] Including org.apache.commons:commons-compress:jar:1.8.1 in the shaded jar.
[INFO] Including org.tukaani:xz:jar:1.5 in the shaded jar.
[INFO] Including org.bdgenomics.adam:adam-core-spark3_2.12:jar:0.33.0-SNAPSHOT in the shaded jar.
[INFO] Including org.bdgenomics.utils:utils-intervalrdd-spark3_2.12:jar:0.3.0 in the shaded jar.
[INFO] Including com.esotericsoftware.kryo:kryo:jar:2.24.0 in the shaded jar.
[INFO] Including com.esotericsoftware.minlog:minlog:jar:1.2 in the shaded jar.
[INFO] Including org.objenesis:objenesis:jar:2.1 in the shaded jar.
[INFO] Including commons-io:commons-io:jar:2.6 in the shaded jar.
[INFO] Including it.unimi.dsi:fastutil:jar:6.6.5 in the shaded jar.
[INFO] Including org.seqdoop:hadoop-bam:jar:7.9.2 in the shaded jar.
[INFO] Including com.github.jsr203hadoop:jsr203hadoop:jar:1.0.3 in the shaded jar.
[INFO] Including com.github.samtools:htsjdk:jar:2.19.0 in the shaded jar.
[INFO] Including org.apache.commons:commons-jexl:jar:2.1.1 in the shaded jar.
[INFO] Including gov.nih.nlm.ncbi:ngs-java:jar:2.9.0 in the shaded jar.
[INFO] Including com.google.guava:guava:jar:27.0-jre in the shaded jar.
[INFO] Including com.google.guava:failureaccess:jar:1.0 in the shaded jar.
[INFO] Including com.google.guava:listenablefuture:jar:9999.0-empty-to-avoid-conflict-with-guava in the shaded jar.
[INFO] Including org.checkerframework:checker-qual:jar:2.5.2 in the shaded jar.
[INFO] Including com.google.errorprone:error_prone_annotations:jar:2.2.0 in the shaded jar.
[INFO] Including com.google.j2objc:j2objc-annotations:jar:1.1 in the shaded jar.
[INFO] Including org.codehaus.mojo:animal-sniffer-annotations:jar:1.17 in the shaded jar.
[INFO] Including org.bdgenomics.adam:adam-codegen-spark3_2.12:jar:0.33.0-SNAPSHOT in the shaded jar.
[INFO] Including org.bdgenomics.adam:adam-apis-spark3_2.12:jar:0.33.0-SNAPSHOT in the shaded jar.
[INFO] Including args4j:args4j:jar:2.33 in the shaded jar.
[INFO] Including net.codingwell:scala-guice_2.12:jar:4.2.1 in the shaded jar.
[INFO] Including com.google.inject:guice:jar:4.2.0 in the shaded jar.
[INFO] Including javax.inject:javax.inject:jar:1 in the shaded jar.
[INFO] Including aopalliance:aopalliance:jar:1.0 in the shaded jar.
[INFO] Including org.scala-lang:scala-reflect:jar:2.12.6 in the shaded jar.
[INFO] Including com.google.code.findbugs:jsr305:jar:1.3.9 in the shaded jar.
[WARNING] WORKAROUND:  refusing to add class org/apache/parquet/avro/AvroSchemaConverter$2.class from jar /home/jenkins/.m2/repository/org/apache/parquet/parquet-avro/1.10.1/parquet-avro-1.10.1.jar
[WARNING] WORKAROUND:  refusing to add class org/apache/parquet/avro/AvroSchemaConverter.class from jar /home/jenkins/.m2/repository/org/apache/parquet/parquet-avro/1.10.1/parquet-avro-1.10.1.jar
[WARNING] WORKAROUND:  refusing to add class org/apache/parquet/avro/AvroSchemaConverter$1.class from jar /home/jenkins/.m2/repository/org/apache/parquet/parquet-avro/1.10.1/parquet-avro-1.10.1.jar
[WARNING] guava-27.0-jre.jar, failureaccess-1.0.jar define 2 overlapping classes: 
[WARNING]   - com.google.common.util.concurrent.internal.InternalFutureFailureAccess
[WARNING]   - com.google.common.util.concurrent.internal.InternalFutures
[WARNING] maven-shade-plugin has detected that some class files are
[WARNING] present in two or more JARs. When this happens, only one
[WARNING] single version of the class is copied to the uber jar.
[WARNING] Usually this is not harmful and you can skip these warnings,
[WARNING] otherwise try to manually exclude artifacts based on
[WARNING] mvn dependency:tree -Ddetail=true and the above output.
[WARNING] See http://maven.apache.org/plugins/maven-shade-plugin/
[INFO] Replacing original artifact with shaded artifact.
[INFO] Replacing /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-assembly/target/adam-assembly-spark3_2.12-0.33.0-SNAPSHOT.jar with /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-assembly/target/adam-assembly-spark3_2.12-0.33.0-SNAPSHOT-shaded.jar
[INFO] 
[INFO] ---------< org.bdgenomics.adam:adam-distribution-spark3_2.12 >----------
[INFO] Building ADAM_2.12: Distribution 0.33.0-SNAPSHOT                   [8/8]
[INFO] --------------------------------[ pom ]---------------------------------
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-distribution-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-distribution-spark3_2.12 ---
[INFO] 
[INFO] --- scalariform-maven-plugin:0.1.4:format (default-cli) @ adam-distribution-spark3_2.12 ---
[INFO] Modified 0 of 0 .scala files
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:compile (scala-compile-first) @ adam-distribution-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:testCompile (scala-test-compile-first) @ adam-distribution-spark3_2.12 ---
[INFO] No sources to compile
[INFO] 
[INFO] --- maven-source-plugin:3.0.1:jar-no-fork (attach-sources) @ adam-distribution-spark3_2.12 ---
[INFO] 
[INFO] --- maven-javadoc-plugin:3.1.0:jar (attach-javadoc) @ adam-distribution-spark3_2.12 ---
[INFO] 
[INFO] >>> scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) > generate-sources @ adam-distribution-spark3_2.12 >>>
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-versions) @ adam-distribution-spark3_2.12 ---
[INFO] 
[INFO] --- maven-enforcer-plugin:1.0:enforce (enforce-maven) @ adam-distribution-spark3_2.12 ---
[INFO] 
[INFO] <<< scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) < generate-sources @ adam-distribution-spark3_2.12 <<<
[INFO] 
[INFO] 
[INFO] --- scala-maven-plugin:3.2.2:doc-jar (attach-scaladocs) @ adam-distribution-spark3_2.12 ---
[INFO] No source files found
[INFO] 
[INFO] --- maven-assembly-plugin:3.2.0:single (default) @ adam-distribution-spark3_2.12 ---
[INFO] Reading assembly descriptor: src/main/assembly/assembly.xml
[INFO] Building tar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-distribution/target/adam-distribution-spark3_2.12-0.33.0-SNAPSHOT-bin.tar.gz
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/smithwaterman/ longer than 100 characters.
[WARNING] Resulting tar file can only be processed successfully by GNU compatible tar commands
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/apache/parquet/avro/AvroSchemaConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/OptionalPositionOrdering$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/OptionalRegionOrdering$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReadGroupDictionary$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/OptionalReferenceOrdering.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferencePosition.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/VariantContext.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/VariantContext$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferencePosition$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferenceRegionSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferenceOrdering.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReadGroupDictionary.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/SequenceDictionary$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/PositionOrdering$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferenceRegion$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/RegionOrdering$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/SequenceDictionary.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/SequenceRecord.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferenceRegion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/SequenceRecord$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferencePositionSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/VariantContextSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/TagType$$TypeVal.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/GenotypeField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/ReadField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/ReadGroupField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/Projection$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/ReferenceField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/Filter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/DbxrefField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/SliceField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FeatureField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FieldValue.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/AlignmentField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/OntologyTermField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/SampleField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/VariantAnnotationField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/SequenceField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FieldEnumeration$SchemaVal.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/VariantField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/VariantCallingAnnotationsField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FragmentField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/TranscriptEffectField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FieldEnumeration.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rich/RichAlignment$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantContext$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantCallingAnnotations$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/TranscriptEffect.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantAnnotation$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/TranscriptEffect$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/ProcessingStep$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantCallingAnnotations.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantAnnotation.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/ADAMKryoRegistrator.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/AvroSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/InputStreamWithDecoder.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/index.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/WritableSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/io/SingleFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/io/FastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/io/FastqRecordReader.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/io/InterleavedFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/smithwaterman/SmithWaterman.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/smithwaterman/SmithWatermanConstantGapScoring.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/smithwaterman/index.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/consensus/ConsensusGenerator$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/consensus/index.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/consensus/ConsensusGenerator.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/FileExtensions$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/AttributeUtils$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ParquetFileTraversable.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/TextRddWriter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/SequenceDictionaryReader$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/TwoBitFileSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/GenomeFileReader$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ReferenceContigMapSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ReferenceContigMap$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ParquetLogger$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/IndexedFastaFile.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ReferenceContigMap.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/RDDBoundGenericGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicDatasetWithLineage.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/LeftOuterShuffleRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/DatasetBoundSequenceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/SequenceDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/ParquetUnboundSequenceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/RDDBoundSliceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/SequenceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/SliceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/ParquetUnboundSliceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/FASTAInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/RDDBoundSequenceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/SliceDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/DatasetBoundSliceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/FASTAInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/RightOuterTreeRegionJoinAndGroupByRight.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMSAMOutputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/SAMInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AlignmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/FASTQInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMCRAMOutputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/BAMInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMCRAMOutputFormatHeaderLess.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AnySAMOutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/DatasetBoundReadDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMBAMOutputFormatHeaderLess.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ReadDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/QualityScoreBin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ReferencePositionPairSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AnySAMInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/BAMInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/FASTQInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/RDDBoundAlignmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMBAMOutputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ParquetUnboundReadDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/QualityScoreBin$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/SingleReadBucketSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ReadDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ParquetUnboundAlignmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/IncorrectMDTagException.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMSAMOutputFormatHeaderLess.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/DatasetBoundAlignmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/SAMInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AlignmentDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AnySAMInFormatterCompanion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/RDDBoundReadDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenericGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/AvroGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InnerTreeRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/MultisampleGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicRegionPartitioner$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicPositionPartitioner.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/VictimlessSortedIntervalPartitionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/LeftOuterShuffleRegionJoinAndGroupByLeft.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InFormatterCompanion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/NarrowPeakInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/RDDBoundCoverageDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/ParquetUnboundFeatureDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/DatasetBoundCoverageDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GTFInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/BEDInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/BEDOutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GFF3InFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GTFInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/NarrowPeakInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/CoverageDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GFF3InFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GFF3OutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/CoverageDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/FeatureDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/RDDBoundFeatureDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GTFOutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/BEDInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/ParquetUnboundCoverageDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/FeatureDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/NarrowPeakOutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/DatasetBoundFeatureDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/RDDBoundVariantContextDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VariantDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VariantContextDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VariantDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/RDDBoundVariantDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VCFOutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/ADAMVCFOutputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/DatasetBoundVariantContextDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/RDDBoundGenotypeDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VCFInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/DatasetBoundGenotypeDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/DatasetBoundVariantDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/ParquetUnboundGenotypeDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VCFInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/GenotypeDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/ParquetUnboundVariantDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VariantContextDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/GenotypeDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InnerShuffleRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicRegionPartitioner.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/MultisampleAvroGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/AvroReadGroupGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/ShuffleRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/ReferencePartitioner.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InnerTreeRegionJoinAndGroupByRight.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicBroadcast.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenericConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/ParquetUnboundFragmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/Tab6InFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/FragmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/Tab6InFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/FragmentDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/InterleavedFASTQInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/DatasetBoundFragmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/RDDBoundFragmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/InterleavedFASTQInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/Tab5InFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/Tab5InFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/DatasetBoundGenericGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/ADAMSaveAnyArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/FullOuterShuffleRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/SortedIntervalPartitionJoinWithVictims.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/RightOuterTreeRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InnerShuffleRegionJoinAndGroupByLeft.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/DatasetBoundGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicPositionPartitioner$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/RightOuterShuffleRegionJoinAndGroupByLeft.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/converters/VariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/converters/AlignmentConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/converters/DefaultHeaderLines$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/converters/VariantContextConverter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/javadocs/org/apache/parquet/avro/class-use/AvroSchemaConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/javadocs/org/apache/parquet/avro/AvroSchemaConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/class-use/SingleFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/class-use/FastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/class-use/FastqRecordReader.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/class-use/InterleavedFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/SingleFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/FastqRecordReader.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/InterleavedFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/python/DataFrameConversionWrapper.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToReadDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToCoverageDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/JavaADAMContext$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToVariantContextsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToAlignmentDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToGenotypeDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToVariantContextsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToFragmentDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToSliceDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToFeatureConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToVariantContextsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToVariantDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToSequenceDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/JavaADAMContext.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToFeatureDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToVariantContextDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFragments$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFeaturesArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSequencesArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/MergeShardsArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformGenotypes.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformVariantsArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSlices.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformAlignments.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSlices$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountReadKmers$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformGenotypes$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFragments.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFeatures$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountSliceKmers$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFragmentsArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformVariants.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformVariants$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFeatures.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSlicesArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountReadKmersArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountSliceKmers.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformAlignmentsArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSequences$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformGenotypesArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountSliceKmersArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformAlignments$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSequences.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/repo/adam-assembly-spark3_2.12-0.33.0-SNAPSHOT-javadoc.jar longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/repo/adam-assembly-spark3_2.12-0.33.0-SNAPSHOT-sources.jar longer than 100 characters.
[INFO] Building tar: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-distribution/target/adam-distribution-spark3_2.12-0.33.0-SNAPSHOT-bin.tar.bz2
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/smithwaterman/ longer than 100 characters.
[WARNING] Resulting tar file can only be processed successfully by GNU compatible tar commands
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/apache/parquet/avro/AvroSchemaConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/OptionalPositionOrdering$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/OptionalRegionOrdering$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReadGroupDictionary$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/OptionalReferenceOrdering.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferencePosition.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/VariantContext.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/VariantContext$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferencePosition$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferenceRegionSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferenceOrdering.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReadGroupDictionary.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/SequenceDictionary$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/PositionOrdering$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferenceRegion$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/RegionOrdering$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/SequenceDictionary.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/SequenceRecord.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferenceRegion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/SequenceRecord$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/ReferencePositionSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/VariantContextSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/models/TagType$$TypeVal.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/GenotypeField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/ReadField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/ReadGroupField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/Projection$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/ReferenceField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/Filter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/DbxrefField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/SliceField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FeatureField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FieldValue.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/AlignmentField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/OntologyTermField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/SampleField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/VariantAnnotationField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/SequenceField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FieldEnumeration$SchemaVal.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/VariantField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/VariantCallingAnnotationsField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FragmentField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/TranscriptEffectField$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/projections/FieldEnumeration.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rich/RichAlignment$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantContext$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantCallingAnnotations$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/TranscriptEffect.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantAnnotation$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/TranscriptEffect$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/ProcessingStep$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantCallingAnnotations.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/sql/VariantAnnotation.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/ADAMKryoRegistrator.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/AvroSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/InputStreamWithDecoder.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/index.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/serialization/WritableSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/io/SingleFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/io/FastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/io/FastqRecordReader.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/io/InterleavedFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/smithwaterman/SmithWaterman.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/smithwaterman/SmithWatermanConstantGapScoring.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/smithwaterman/index.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/consensus/ConsensusGenerator$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/consensus/index.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/algorithms/consensus/ConsensusGenerator.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/FileExtensions$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/AttributeUtils$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ParquetFileTraversable.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/TextRddWriter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/SequenceDictionaryReader$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/TwoBitFileSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/GenomeFileReader$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ReferenceContigMapSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ReferenceContigMap$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ParquetLogger$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/IndexedFastaFile.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/util/ReferenceContigMap.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/RDDBoundGenericGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicDatasetWithLineage.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/LeftOuterShuffleRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/DatasetBoundSequenceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/SequenceDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/ParquetUnboundSequenceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/RDDBoundSliceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/SequenceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/SliceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/ParquetUnboundSliceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/FASTAInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/RDDBoundSequenceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/SliceDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/DatasetBoundSliceDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/sequence/FASTAInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/RightOuterTreeRegionJoinAndGroupByRight.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMSAMOutputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/SAMInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AlignmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/FASTQInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMCRAMOutputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/BAMInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMCRAMOutputFormatHeaderLess.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AnySAMOutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/DatasetBoundReadDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMBAMOutputFormatHeaderLess.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ReadDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/QualityScoreBin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ReferencePositionPairSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AnySAMInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/BAMInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/FASTQInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/RDDBoundAlignmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMBAMOutputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ParquetUnboundReadDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/QualityScoreBin$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/SingleReadBucketSerializer.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ReadDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ParquetUnboundAlignmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/IncorrectMDTagException.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/ADAMSAMOutputFormatHeaderLess.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/DatasetBoundAlignmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/SAMInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AlignmentDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/AnySAMInFormatterCompanion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/read/RDDBoundReadDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenericGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/AvroGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InnerTreeRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/MultisampleGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicRegionPartitioner$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicPositionPartitioner.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/VictimlessSortedIntervalPartitionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/LeftOuterShuffleRegionJoinAndGroupByLeft.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InFormatterCompanion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/NarrowPeakInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/RDDBoundCoverageDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/ParquetUnboundFeatureDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/DatasetBoundCoverageDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GTFInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/BEDInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/BEDOutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GFF3InFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GTFInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/NarrowPeakInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/CoverageDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GFF3InFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GFF3OutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/CoverageDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/FeatureDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/RDDBoundFeatureDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/GTFOutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/BEDInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/ParquetUnboundCoverageDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/FeatureDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/NarrowPeakOutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/feature/DatasetBoundFeatureDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/RDDBoundVariantContextDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VariantDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VariantContextDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VariantDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/RDDBoundVariantDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VCFOutFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/ADAMVCFOutputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/DatasetBoundVariantContextDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/RDDBoundGenotypeDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VCFInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/DatasetBoundGenotypeDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/DatasetBoundVariantDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/ParquetUnboundGenotypeDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VCFInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/GenotypeDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/ParquetUnboundVariantDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/VariantContextDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/variant/GenotypeDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InnerShuffleRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicRegionPartitioner.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/MultisampleAvroGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/AvroReadGroupGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/ShuffleRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/ReferencePartitioner.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InnerTreeRegionJoinAndGroupByRight.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicBroadcast.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenericConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/ParquetUnboundFragmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/Tab6InFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/FragmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/Tab6InFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/FragmentDataset$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/InterleavedFASTQInFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/DatasetBoundFragmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/RDDBoundFragmentDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/InterleavedFASTQInFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/Tab5InFormatter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/fragment/Tab5InFormatter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/DatasetBoundGenericGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/ADAMSaveAnyArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/FullOuterShuffleRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/SortedIntervalPartitionJoinWithVictims.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/RightOuterTreeRegionJoin.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/InnerShuffleRegionJoinAndGroupByLeft.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/DatasetBoundGenomicDataset.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/GenomicPositionPartitioner$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/rdd/RightOuterShuffleRegionJoinAndGroupByLeft.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/converters/VariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/converters/AlignmentConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/converters/DefaultHeaderLines$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/converters/VariantContextConverter$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/javadocs/org/apache/parquet/avro/class-use/AvroSchemaConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/javadocs/org/apache/parquet/avro/AvroSchemaConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/class-use/SingleFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/class-use/FastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/class-use/FastqRecordReader.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/class-use/InterleavedFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/SingleFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/FastqRecordReader.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/javadocs/org/bdgenomics/adam/io/InterleavedFastqInputFormat.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/python/DataFrameConversionWrapper.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToReadDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToCoverageDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/JavaADAMContext$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToVariantContextsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToAlignmentDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToGenotypeDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToVariantContextsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToFragmentDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToSliceDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FeaturesToFeatureConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToVariantsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToVariantContextsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToReadsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToVariantContextConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/CoverageToFragmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToVariantDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToAlignmentsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToVariantsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToSlicesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToSequencesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToSequenceDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToCoverageDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantsToSequencesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToReadsConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToAlignmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/JavaADAMContext.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToFeatureDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/VariantContextsToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToCoverageConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/AlignmentsToGenotypesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ToVariantContextDatasetConversion.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/GenotypesToGenotypesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToFragmentsDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/ReadsToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SequencesToFeaturesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/SlicesToFeaturesDatasetConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/api/java/FragmentsToSlicesConverter.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFragments$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFeaturesArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSequencesArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/MergeShardsArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformGenotypes.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformVariantsArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSlices.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformAlignments.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSlices$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountReadKmers$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformGenotypes$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFragments.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFeatures$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountSliceKmers$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFragmentsArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformVariants.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformVariants$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformFeatures.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSlicesArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountReadKmersArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountSliceKmers.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformAlignmentsArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSequences$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformGenotypesArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/CountSliceKmersArgs.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformAlignments$.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/scaladocs/org/bdgenomics/adam/cli/TransformSequences.html longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/repo/adam-assembly-spark3_2.12-0.33.0-SNAPSHOT-javadoc.jar longer than 100 characters.
[WARNING] Entry: adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/repo/adam-assembly-spark3_2.12-0.33.0-SNAPSHOT-sources.jar longer than 100 characters.
[INFO] Building zip: /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/adam-distribution/target/adam-distribution-spark3_2.12-0.33.0-SNAPSHOT-bin.zip
[INFO] ------------------------------------------------------------------------
[INFO] Reactor Summary for ADAM_2.12 0.33.0-SNAPSHOT:
[INFO] 
[INFO] ADAM_2.12 .......................................... SUCCESS [  8.716 s]
[INFO] ADAM_2.12: Shader workaround ....................... SUCCESS [  4.842 s]
[INFO] ADAM_2.12: Avro-to-Dataset codegen utils ........... SUCCESS [  4.300 s]
[INFO] ADAM_2.12: Core .................................... SUCCESS [01:21 min]
[INFO] ADAM_2.12: APIs for Java, Python ................... SUCCESS [ 13.269 s]
[INFO] ADAM_2.12: CLI ..................................... SUCCESS [ 19.834 s]
[INFO] ADAM_2.12: Assembly ................................ SUCCESS [ 13.675 s]
[INFO] ADAM_2.12: Distribution ............................ SUCCESS [ 36.772 s]
[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESS
[INFO] ------------------------------------------------------------------------
[INFO] Total time:  03:03 min
[INFO] Finished at: 2020-09-09T12:19:49-07:00
[INFO] ------------------------------------------------------------------------

# make sure that the distribution package contains an assembly jar
# if no assembly jar is found, this will exit with code 1 and fail the build
tar tzvf adam-distribution/target/adam-distribution*-bin.tar.gz | \
    grep adam-assembly | \
    grep jar | \
    grep -v -e sources -e javadoc 
+ grep adam-assembly
+ tar tzvf adam-distribution/target/adam-distribution-spark3_2.12-0.33.0-SNAPSHOT-bin.tar.gz
+ grep jar
+ grep -v -e sources -e javadoc
-rw-r--r-- jenkins/jenkins 40241573 2020-09-09 12:19 adam-distribution-spark3_2.12-0.33.0-SNAPSHOT/repo/adam-assembly-spark3_2.12-0.33.0-SNAPSHOT.jar

# we are done with maven, so clean up the maven temp dir
find ${ADAM_MVN_TMP_DIR}
+ find /tmp/adamTestMvnFJdRuV3
/tmp/adamTestMvnFJdRuV3
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite8754325528504463966
/tmp/adamTestMvnFJdRuV3/TempSuite2885334710757035763
/tmp/adamTestMvnFJdRuV3/TempSuite1247701737506617862
/tmp/adamTestMvnFJdRuV3/unordered.sam2296883230086282148.sam
/tmp/adamTestMvnFJdRuV3/TempSuite7639887580828960401
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite8754325528504463966.adam
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite8754325528504463966.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite8754325528504463966.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite8754325528504463966.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite8754325528504463966.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite8754325528504463966.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite8754325528504463966.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite8754325528504463966.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite8754325528504463966.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite8754325528504463966.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite8754325528504463966.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite8754325528504463966.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite8754325528504463966.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite8754325528504463966.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite8754325528504463966.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite8754325528504463966.adam/_metadata
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite8754325528504463966.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite7981822180348709984.gtf
/tmp/adamTestMvnFJdRuV3/TempSuite8755096023719145791
/tmp/adamTestMvnFJdRuV3/TempSuite8308914871270616814
/tmp/adamTestMvnFJdRuV3/TempSuite3832680705537066455
/tmp/adamTestMvnFJdRuV3/TempSuite2430159825651289047
/tmp/adamTestMvnFJdRuV3/8205242307493455616
/tmp/adamTestMvnFJdRuV3/8205242307493455616/unordered.sam
/tmp/adamTestMvnFJdRuV3/8205242307493455616/.unordered.sam.crc
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite1462549401947816734
/tmp/adamTestMvnFJdRuV3/TempSuite4398935283249326000.adam
/tmp/adamTestMvnFJdRuV3/TempSuite4398935283249326000.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite4398935283249326000.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4398935283249326000.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite4398935283249326000.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4398935283249326000.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite4398935283249326000.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4398935283249326000.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite4398935283249326000.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4398935283249326000.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4398935283249326000.adam/_metadata
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite745943815963658381.narrowPeak
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite745943815963658381.narrowPeak/_SUCCESS
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite745943815963658381.narrowPeak/part-00001
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite745943815963658381.narrowPeak/.part-00003.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite745943815963658381.narrowPeak/part-00000
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite745943815963658381.narrowPeak/part-00003
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite745943815963658381.narrowPeak/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite745943815963658381.narrowPeak/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite745943815963658381.narrowPeak/part-00002
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite745943815963658381.narrowPeak/.part-00002.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite745943815963658381.narrowPeak/.part-00001.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1319573137098650586.adam
/tmp/adamTestMvnFJdRuV3/TempSuite1319573137098650586.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite1319573137098650586.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1319573137098650586.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite1319573137098650586.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/TempSuite1319573137098650586.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1319573137098650586.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite1319573137098650586.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1319573137098650586.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1319573137098650586.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite1319573137098650586.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1319573137098650586.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1319573137098650586.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1319573137098650586.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite1319573137098650586.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/TempSuite4761308922211874576
/tmp/adamTestMvnFJdRuV3/TempSuite6750380254748814692.adam
/tmp/adamTestMvnFJdRuV3/TempSuite6750380254748814692.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite6750380254748814692.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6750380254748814692.adam/.part-00000-7ca548d1-686a-43c2-ab4b-997a9a6252bb-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6750380254748814692.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/TempSuite6750380254748814692.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite6750380254748814692.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6750380254748814692.adam/part-00000-7ca548d1-686a-43c2-ab4b-997a9a6252bb-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite6750380254748814692.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6750380254748814692.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6750380254748814692.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite7004382496025378432
/tmp/adamTestMvnFJdRuV3/TempSuite4168746069822200143
/tmp/adamTestMvnFJdRuV3/TempSuite3529886989575677156.bed
/tmp/adamTestMvnFJdRuV3/TempSuite3529886989575677156.bed/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite3529886989575677156.bed/part-00001
/tmp/adamTestMvnFJdRuV3/TempSuite3529886989575677156.bed/.part-00003.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3529886989575677156.bed/part-00000
/tmp/adamTestMvnFJdRuV3/TempSuite3529886989575677156.bed/part-00003
/tmp/adamTestMvnFJdRuV3/TempSuite3529886989575677156.bed/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3529886989575677156.bed/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3529886989575677156.bed/part-00002
/tmp/adamTestMvnFJdRuV3/TempSuite3529886989575677156.bed/.part-00002.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3529886989575677156.bed/.part-00001.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4644598872047841295
/tmp/adamTestMvnFJdRuV3/TempSuite343178745708300567
/tmp/adamTestMvnFJdRuV3/TempSuite5659542326187121900.adam
/tmp/adamTestMvnFJdRuV3/TempSuite5659542326187121900.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite5659542326187121900.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5659542326187121900.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite5659542326187121900.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/TempSuite5659542326187121900.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5659542326187121900.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite5659542326187121900.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5659542326187121900.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5659542326187121900.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite5659542326187121900.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5659542326187121900.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5659542326187121900.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5659542326187121900.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite5659542326187121900.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/TempSuite3135140252211152666
/tmp/adamTestMvnFJdRuV3/TempSuite3443045534717278254.bed
/tmp/adamTestMvnFJdRuV3/TempSuite3443045534717278254.bed/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite3443045534717278254.bed/part-00000
/tmp/adamTestMvnFJdRuV3/TempSuite3443045534717278254.bed/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3443045534717278254.bed/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/4641550500092661858
/tmp/adamTestMvnFJdRuV3/4641550500092661858/coverage.adam
/tmp/adamTestMvnFJdRuV3/4641550500092661858/coverage.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/4641550500092661858/coverage.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/4641550500092661858/coverage.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/4641550500092661858/coverage.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/4641550500092661858/coverage.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/4641550500092661858/coverage.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/4641550500092661858/coverage.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/4641550500092661858/coverage.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/4641550500092661858/coverage.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/4641550500092661858/coverage.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/4641550500092661858/coverage.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/4641550500092661858/coverage.adam/_metadata
/tmp/adamTestMvnFJdRuV3/1599678319488-0
/tmp/adamTestMvnFJdRuV3/1599678319488-0/.test_single.vcf.crc
/tmp/adamTestMvnFJdRuV3/1599678319488-0/test.vcf
/tmp/adamTestMvnFJdRuV3/1599678319488-0/test.vcf/_SUCCESS
/tmp/adamTestMvnFJdRuV3/1599678319488-0/test.vcf/part-r-00000
/tmp/adamTestMvnFJdRuV3/1599678319488-0/test.vcf/.part-r-00000.crc
/tmp/adamTestMvnFJdRuV3/1599678319488-0/test.vcf/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/1599678319488-0/test_single.vcf
/tmp/adamTestMvnFJdRuV3/TempSuite3283474955692576210.adam
/tmp/adamTestMvnFJdRuV3/TempSuite3283474955692576210.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite3283474955692576210.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3283474955692576210.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3283474955692576210.adam/part-00000-cbb3cabb-0c4d-4dba-bf61-96902d4e880a-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite3283474955692576210.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite3283474955692576210.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3283474955692576210.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3283474955692576210.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/TempSuite3283474955692576210.adam/_header
/tmp/adamTestMvnFJdRuV3/TempSuite3283474955692576210.adam/.part-00000-cbb3cabb-0c4d-4dba-bf61-96902d4e880a-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/1599677876303-0
/tmp/adamTestMvnFJdRuV3/1599677876303-0/bamReads.adam
/tmp/adamTestMvnFJdRuV3/1599677876303-0/bamReads.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/1599677876303-0/bamReads.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/1599677876303-0/bamReads.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/1599677876303-0/bamReads.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/1599677876303-0/bamReads.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/1599677876303-0/bamReads.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/1599677876303-0/bamReads.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/1599677876303-0/bamReads.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/1599677876303-0/bamReads.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/1599677876303-0/bamReads.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/1599677876303-0/bamReads.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/1599677876303-0/bamReads.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/1599677876303-0/bamReads.adam/_metadata
/tmp/adamTestMvnFJdRuV3/1599677876303-0/bamReads.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/TempSuite4281792501647926679.adam
/tmp/adamTestMvnFJdRuV3/TempSuite4281792501647926679.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite4281792501647926679.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4281792501647926679.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite4281792501647926679.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4281792501647926679.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite4281792501647926679.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4281792501647926679.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite4281792501647926679.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4281792501647926679.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4281792501647926679.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite409588221409286147.adam
/tmp/adamTestMvnFJdRuV3/TempSuite409588221409286147.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite409588221409286147.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite409588221409286147.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite409588221409286147.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite409588221409286147.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite409588221409286147.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/TempSuite409588221409286147.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite409588221409286147.adam/_partitionMap.avro
/tmp/adamTestMvnFJdRuV3/TempSuite409588221409286147.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite409588221409286147.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite409588221409286147.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite409588221409286147.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite409588221409286147.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite409588221409286147.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite409588221409286147.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite409588221409286147.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite409588221409286147.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite409588221409286147.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite409588221409286147.adam/._partitionMap.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite409588221409286147.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite409588221409286147.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite409588221409286147.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/5462849850361265521
/tmp/adamTestMvnFJdRuV3/TempSuite2896151435134035252
/tmp/adamTestMvnFJdRuV3/TempSuite5912201012000064014.adam
/tmp/adamTestMvnFJdRuV3/TempSuite5912201012000064014.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite5912201012000064014.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5912201012000064014.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite5912201012000064014.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5912201012000064014.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite5912201012000064014.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5912201012000064014.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite5912201012000064014.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5912201012000064014.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5912201012000064014.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite5912201012000064014.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5912201012000064014.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite5912201012000064014.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5912201012000064014.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5912201012000064014.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite5912201012000064014.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite8846722049373168125
/tmp/adamTestMvnFJdRuV3/TempSuite8116052284808651830.fq
/tmp/adamTestMvnFJdRuV3/TempSuite2852361438575158315.adam
/tmp/adamTestMvnFJdRuV3/TempSuite2852361438575158315.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite2852361438575158315.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2852361438575158315.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite2852361438575158315.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/TempSuite2852361438575158315.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2852361438575158315.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite2852361438575158315.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2852361438575158315.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2852361438575158315.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite2852361438575158315.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2852361438575158315.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2852361438575158315.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2852361438575158315.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite2852361438575158315.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite7308615969378626031.adam
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite7308615969378626031.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite7308615969378626031.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite7308615969378626031.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite7308615969378626031.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite7308615969378626031.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite7308615969378626031.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite7308615969378626031.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite7308615969378626031.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite7308615969378626031.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite7308615969378626031.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite7308615969378626031.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite7308615969378626031.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite7308615969378626031.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite7308615969378626031.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite7308615969378626031.adam/_metadata
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite7308615969378626031.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite6157362027721170776.adam
/tmp/adamTestMvnFJdRuV3/TempSuite6157362027721170776.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite6157362027721170776.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6157362027721170776.adam/.part-00000-ed8c5241-e1f8-49c6-994c-6ae12bffe63f-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6157362027721170776.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite6157362027721170776.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6157362027721170776.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6157362027721170776.adam/_header
/tmp/adamTestMvnFJdRuV3/TempSuite6157362027721170776.adam/part-00000-ed8c5241-e1f8-49c6-994c-6ae12bffe63f-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/artificial.sam6483389726490900955.sam
/tmp/adamTestMvnFJdRuV3/hg19.chrM.2bit3562556657479564.chrM.2bit
/tmp/adamTestMvnFJdRuV3/TempSuite6786895087838329265
/tmp/adamTestMvnFJdRuV3/trinity.fa5736698053315995016.fa
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite6901779504999148526.adam
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite6901779504999148526.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite6901779504999148526.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite6901779504999148526.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite6901779504999148526.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite6901779504999148526.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite6901779504999148526.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite6901779504999148526.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite6901779504999148526.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite6901779504999148526.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite6901779504999148526.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite6901779504999148526.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite6901779504999148526.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite6901779504999148526.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite6901779504999148526.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite6901779504999148526.adam/_metadata
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite6901779504999148526.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite8005596475468551924.fq
/tmp/adamTestMvnFJdRuV3/TempSuite8005596475468551924.fq/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite8005596475468551924.fq/part-00000
/tmp/adamTestMvnFJdRuV3/TempSuite8005596475468551924.fq/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8005596475468551924.fq/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/.TempSuite3099133800425087938.sam.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4353591314744885001.adam
/tmp/adamTestMvnFJdRuV3/TempSuite4353591314744885001.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite4353591314744885001.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4353591314744885001.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite4353591314744885001.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4353591314744885001.adam/part-00000-f26f0fe5-ccb1-4744-ba40-0ab2cd1b12b8-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite4353591314744885001.adam/.part-00000-f26f0fe5-ccb1-4744-ba40-0ab2cd1b12b8-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2794116819651169275.adam
/tmp/adamTestMvnFJdRuV3/TempSuite2794116819651169275.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite2794116819651169275.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2794116819651169275.adam/.part-00000-faafc7f8-52fc-441a-8180-74f044a2d9ed-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2794116819651169275.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/TempSuite2794116819651169275.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite2794116819651169275.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2794116819651169275.adam/part-00000-faafc7f8-52fc-441a-8180-74f044a2d9ed-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite2794116819651169275.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2794116819651169275.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2794116819651169275.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/TempSuite1706101604655404031
/tmp/adamTestMvnFJdRuV3/TempSuite7581181523422138500.adam
/tmp/adamTestMvnFJdRuV3/TempSuite7581181523422138500.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite7581181523422138500.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7581181523422138500.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite7581181523422138500.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/TempSuite7581181523422138500.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7581181523422138500.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite7581181523422138500.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7581181523422138500.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7581181523422138500.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite7581181523422138500.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7581181523422138500.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7581181523422138500.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7581181523422138500.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite7581181523422138500.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/7264627475060530113
/tmp/adamTestMvnFJdRuV3/7264627475060530113/out.bam
/tmp/adamTestMvnFJdRuV3/7264627475060530113/out.bam_head
/tmp/adamTestMvnFJdRuV3/7264627475060530113/.out.bam.crc
/tmp/adamTestMvnFJdRuV3/7264627475060530113/out.bam_tail
/tmp/adamTestMvnFJdRuV3/7264627475060530113/out.bam_tail/_SUCCESS
/tmp/adamTestMvnFJdRuV3/7264627475060530113/out.bam_tail/.part-r-00001.bam.crc
/tmp/adamTestMvnFJdRuV3/7264627475060530113/out.bam_tail/part-r-00000.bam
/tmp/adamTestMvnFJdRuV3/7264627475060530113/out.bam_tail/part-r-00001.bam
/tmp/adamTestMvnFJdRuV3/7264627475060530113/out.bam_tail/.part-r-00002.bam.crc
/tmp/adamTestMvnFJdRuV3/7264627475060530113/out.bam_tail/part-r-00003.bam
/tmp/adamTestMvnFJdRuV3/7264627475060530113/out.bam_tail/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/7264627475060530113/out.bam_tail/.part-r-00003.bam.crc
/tmp/adamTestMvnFJdRuV3/7264627475060530113/out.bam_tail/part-r-00002.bam
/tmp/adamTestMvnFJdRuV3/7264627475060530113/out.bam_tail/.part-r-00000.bam.crc
/tmp/adamTestMvnFJdRuV3/7264627475060530113/.out.bam_head.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8319970145263503973
/tmp/adamTestMvnFJdRuV3/TempSuite2754035481517831227.bed
/tmp/adamTestMvnFJdRuV3/TempSuite2754035481517831227.bed/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite2754035481517831227.bed/part-00000
/tmp/adamTestMvnFJdRuV3/TempSuite2754035481517831227.bed/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2754035481517831227.bed/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/9188711965340270213
/tmp/adamTestMvnFJdRuV3/9188711965340270213/genotypes.nested-annotations.adam
/tmp/adamTestMvnFJdRuV3/9188711965340270213/genotypes.nested-annotations.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/9188711965340270213/genotypes.nested-annotations.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/9188711965340270213/genotypes.nested-annotations.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/9188711965340270213/genotypes.nested-annotations.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/9188711965340270213/genotypes.nested-annotations.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/9188711965340270213/genotypes.nested-annotations.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/9188711965340270213/genotypes.nested-annotations.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/9188711965340270213/genotypes.nested-annotations.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/9188711965340270213/genotypes.nested-annotations.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/9188711965340270213/genotypes.nested-annotations.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/9188711965340270213/genotypes.nested-annotations.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/9188711965340270213/genotypes.nested-annotations.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/9188711965340270213/genotypes.nested-annotations.adam/_metadata
/tmp/adamTestMvnFJdRuV3/9188711965340270213/genotypes.nested-annotations.adam/_header
/tmp/adamTestMvnFJdRuV3/TempSuite2803130161551763428
/tmp/adamTestMvnFJdRuV3/ordered.sam8802077756765363207.sam
/tmp/adamTestMvnFJdRuV3/TempSuite7478162605467285658
/tmp/adamTestMvnFJdRuV3/TempSuite2090311645682966931
/tmp/adamTestMvnFJdRuV3/noqual4787065499751449543
/tmp/adamTestMvnFJdRuV3/noqual4787065499751449543/noqualA.sam
/tmp/adamTestMvnFJdRuV3/noqual4787065499751449543/noqualA.sam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/noqual4787065499751449543/noqualA.sam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/noqual4787065499751449543/noqualA.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnFJdRuV3/noqual4787065499751449543/noqualA.sam/part-r-00000.sam
/tmp/adamTestMvnFJdRuV3/noqual4787065499751449543/noqualB.fastq
/tmp/adamTestMvnFJdRuV3/noqual4787065499751449543/noqualB.fastq/_SUCCESS
/tmp/adamTestMvnFJdRuV3/noqual4787065499751449543/noqualB.fastq/part-00000
/tmp/adamTestMvnFJdRuV3/noqual4787065499751449543/noqualB.fastq/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/noqual4787065499751449543/noqualB.fastq/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2993775965961385512
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3874978352732186250.gff3
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3874978352732186250.gff3/_SUCCESS
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3874978352732186250.gff3/part-00001
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3874978352732186250.gff3/.part-00003.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3874978352732186250.gff3/part-00000
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3874978352732186250.gff3/part-00003
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3874978352732186250.gff3/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3874978352732186250.gff3/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3874978352732186250.gff3/part-00002
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3874978352732186250.gff3/.part-00002.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3874978352732186250.gff3/.part-00001.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1449962028709645224.adam
/tmp/adamTestMvnFJdRuV3/TempSuite1449962028709645224.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite1449962028709645224.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1449962028709645224.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite1449962028709645224.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1449962028709645224.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite1449962028709645224.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1449962028709645224.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite1449962028709645224.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1449962028709645224.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1449962028709645224.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite6478491508832124501.adam
/tmp/adamTestMvnFJdRuV3/TempSuite6478491508832124501.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite6478491508832124501.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6478491508832124501.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6478491508832124501.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite6478491508832124501.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6478491508832124501.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite6478491508832124501.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6478491508832124501.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite6478491508832124501.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6478491508832124501.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6478491508832124501.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6478491508832124501.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/TempSuite6478491508832124501.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite6478491508832124501.adam/_header
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite1236535223233106536
/tmp/adamTestMvnFJdRuV3/adam-cli.TransformFeaturesSuite6297550830753687116.adam
/tmp/adamTestMvnFJdRuV3/adam-cli.TransformFeaturesSuite6297550830753687116.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/adam-cli.TransformFeaturesSuite6297550830753687116.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/adam-cli.TransformFeaturesSuite6297550830753687116.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/adam-cli.TransformFeaturesSuite6297550830753687116.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/adam-cli.TransformFeaturesSuite6297550830753687116.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/adam-cli.TransformFeaturesSuite6297550830753687116.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/adam-cli.TransformFeaturesSuite6297550830753687116.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/adam-cli.TransformFeaturesSuite6297550830753687116.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/adam-cli.TransformFeaturesSuite6297550830753687116.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/adam-cli.TransformFeaturesSuite6297550830753687116.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/adam-cli.TransformFeaturesSuite6297550830753687116.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/adam-cli.TransformFeaturesSuite6297550830753687116.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite6315771475055283870
/tmp/adamTestMvnFJdRuV3/TempSuite8353225936647295933
/tmp/adamTestMvnFJdRuV3/TempSuite2157532560093609623_2.fq
/tmp/adamTestMvnFJdRuV3/TempSuite2157532560093609623_2.fq/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite2157532560093609623_2.fq/part-00000
/tmp/adamTestMvnFJdRuV3/TempSuite2157532560093609623_2.fq/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2157532560093609623_2.fq/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7508869390771647509.adam
/tmp/adamTestMvnFJdRuV3/TempSuite7508869390771647509.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite7508869390771647509.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7508869390771647509.adam/.part-00001-4083ae83-11ea-468b-9d62-89f93f57625e-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7508869390771647509.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7508869390771647509.adam/part-00002-4083ae83-11ea-468b-9d62-89f93f57625e-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite7508869390771647509.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite7508869390771647509.adam/part-00001-4083ae83-11ea-468b-9d62-89f93f57625e-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite7508869390771647509.adam/.part-00002-4083ae83-11ea-468b-9d62-89f93f57625e-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7508869390771647509.adam/.part-00000-4083ae83-11ea-468b-9d62-89f93f57625e-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7508869390771647509.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7508869390771647509.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/TempSuite7508869390771647509.adam/part-00000-4083ae83-11ea-468b-9d62-89f93f57625e-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite4635851203878105120.adam
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite4635851203878105120.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite4635851203878105120.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite4635851203878105120.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite4635851203878105120.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite4635851203878105120.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite4635851203878105120.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite4635851203878105120.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite4635851203878105120.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite4635851203878105120.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite4635851203878105120.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite4635851203878105120.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite4635851203878105120.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite4635851203878105120.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite4635851203878105120.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite4635851203878105120.adam/_metadata
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite4635851203878105120.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite2210898173167248456.bed
/tmp/adamTestMvnFJdRuV3/TempSuite2210898173167248456.bed/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite2210898173167248456.bed/part-00000
/tmp/adamTestMvnFJdRuV3/TempSuite2210898173167248456.bed/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2210898173167248456.bed/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2336852597605964344.adam
/tmp/adamTestMvnFJdRuV3/TempSuite2336852597605964344.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite2336852597605964344.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2336852597605964344.adam/referenceName=1
/tmp/adamTestMvnFJdRuV3/TempSuite2336852597605964344.adam/referenceName=1/positionBin=0
/tmp/adamTestMvnFJdRuV3/TempSuite2336852597605964344.adam/referenceName=1/positionBin=0/part-00000-9ba33afb-eb4e-44b1-85b3-f570eb10afb9.c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite2336852597605964344.adam/referenceName=1/positionBin=0/.part-00000-9ba33afb-eb4e-44b1-85b3-f570eb10afb9.c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2336852597605964344.adam/referenceName=13
/tmp/adamTestMvnFJdRuV3/TempSuite2336852597605964344.adam/referenceName=13/positionBin=0
/tmp/adamTestMvnFJdRuV3/TempSuite2336852597605964344.adam/referenceName=13/positionBin=0/part-00000-9ba33afb-eb4e-44b1-85b3-f570eb10afb9.c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite2336852597605964344.adam/referenceName=13/positionBin=0/.part-00000-9ba33afb-eb4e-44b1-85b3-f570eb10afb9.c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2336852597605964344.adam/_partitionedByStartPos
/tmp/adamTestMvnFJdRuV3/TempSuite2336852597605964344.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite2336852597605964344.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2336852597605964344.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2336852597605964344.adam/._partitionedByStartPos.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2336852597605964344.adam/referenceName=2
/tmp/adamTestMvnFJdRuV3/TempSuite2336852597605964344.adam/referenceName=2/positionBin=0
/tmp/adamTestMvnFJdRuV3/TempSuite2336852597605964344.adam/referenceName=2/positionBin=0/part-00000-9ba33afb-eb4e-44b1-85b3-f570eb10afb9.c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite2336852597605964344.adam/referenceName=2/positionBin=0/.part-00000-9ba33afb-eb4e-44b1-85b3-f570eb10afb9.c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2336852597605964344.adam/_header
/tmp/adamTestMvnFJdRuV3/6810928163338934429
/tmp/adamTestMvnFJdRuV3/6810928163338934429/unordered.sam
/tmp/adamTestMvnFJdRuV3/6810928163338934429/.unordered.sam.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3953117385026823377_2.fq
/tmp/adamTestMvnFJdRuV3/TempSuite3953117385026823377_2.fq/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite3953117385026823377_2.fq/part-00000
/tmp/adamTestMvnFJdRuV3/TempSuite3953117385026823377_2.fq/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3953117385026823377_2.fq/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/unordered.sam6270939807695411627.sam
/tmp/adamTestMvnFJdRuV3/TempSuite7478162605467285658.fa
/tmp/adamTestMvnFJdRuV3/TempSuite7478162605467285658.fa/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite7478162605467285658.fa/part-00000
/tmp/adamTestMvnFJdRuV3/TempSuite7478162605467285658.fa/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7478162605467285658.fa/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite3089745817115274258
/tmp/adamTestMvnFJdRuV3/TempSuite8588616021670529396
/tmp/adamTestMvnFJdRuV3/TempSuite5186554722303309279
/tmp/adamTestMvnFJdRuV3/2831102894063384230
/tmp/adamTestMvnFJdRuV3/2831102894063384230/out.cram
/tmp/adamTestMvnFJdRuV3/2831102894063384230/.out.cram.crc
/tmp/adamTestMvnFJdRuV3/2831102894063384230/out.cram_head
/tmp/adamTestMvnFJdRuV3/2831102894063384230/out.cram_tail
/tmp/adamTestMvnFJdRuV3/2831102894063384230/out.cram_tail/_SUCCESS
/tmp/adamTestMvnFJdRuV3/2831102894063384230/out.cram_tail/part-r-00001.cram
/tmp/adamTestMvnFJdRuV3/2831102894063384230/out.cram_tail/.part-r-00003.cram.crc
/tmp/adamTestMvnFJdRuV3/2831102894063384230/out.cram_tail/part-r-00000.cram
/tmp/adamTestMvnFJdRuV3/2831102894063384230/out.cram_tail/.part-r-00002.cram.crc
/tmp/adamTestMvnFJdRuV3/2831102894063384230/out.cram_tail/part-r-00003.cram
/tmp/adamTestMvnFJdRuV3/2831102894063384230/out.cram_tail/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/2831102894063384230/out.cram_tail/.part-r-00001.cram.crc
/tmp/adamTestMvnFJdRuV3/2831102894063384230/out.cram_tail/part-r-00002.cram
/tmp/adamTestMvnFJdRuV3/2831102894063384230/out.cram_tail/.part-r-00000.cram.crc
/tmp/adamTestMvnFJdRuV3/2831102894063384230/.out.cram_head.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4924789032713323726.adam
/tmp/adamTestMvnFJdRuV3/TempSuite4924789032713323726.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite4924789032713323726.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4924789032713323726.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite4924789032713323726.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4924789032713323726.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite4924789032713323726.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4924789032713323726.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite4924789032713323726.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4924789032713323726.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4924789032713323726.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4924789032713323726.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite4924789032713323726.adam/_header
/tmp/adamTestMvnFJdRuV3/.TempSuite935820219253541262.fq.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2993775965961385512.adam
/tmp/adamTestMvnFJdRuV3/TempSuite2993775965961385512.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite2993775965961385512.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2993775965961385512.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2993775965961385512.adam/.part-00003-13b19f1e-c24c-435e-a37d-404490ed7341-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2993775965961385512.adam/part-00003-13b19f1e-c24c-435e-a37d-404490ed7341-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite2993775965961385512.adam/part-00000-13b19f1e-c24c-435e-a37d-404490ed7341-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite2993775965961385512.adam/part-00005-13b19f1e-c24c-435e-a37d-404490ed7341-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite2993775965961385512.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite2993775965961385512.adam/.part-00005-13b19f1e-c24c-435e-a37d-404490ed7341-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2993775965961385512.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2993775965961385512.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/TempSuite2993775965961385512.adam/.part-00000-13b19f1e-c24c-435e-a37d-404490ed7341-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/hg19.chrM.2bit6118624116548020218.chrM.2bit
/tmp/adamTestMvnFJdRuV3/TempSuite7133231761547473214.fq
/tmp/adamTestMvnFJdRuV3/TempSuite7133231761547473214.fq/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite7133231761547473214.fq/part-00000
/tmp/adamTestMvnFJdRuV3/TempSuite7133231761547473214.fq/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7133231761547473214.fq/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite1974927402567402529.gff3
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite1974927402567402529.gff3/_SUCCESS
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite1974927402567402529.gff3/part-00001
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite1974927402567402529.gff3/.part-00003.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite1974927402567402529.gff3/part-00000
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite1974927402567402529.gff3/part-00003
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite1974927402567402529.gff3/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite1974927402567402529.gff3/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite1974927402567402529.gff3/part-00002
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite1974927402567402529.gff3/.part-00002.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite1974927402567402529.gff3/.part-00001.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1275962507877464295
/tmp/adamTestMvnFJdRuV3/.TempSuite4761308922211874576_2.fq.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6425699306672987076.adam
/tmp/adamTestMvnFJdRuV3/TempSuite6425699306672987076.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite6425699306672987076.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6425699306672987076.adam/referenceName=1
/tmp/adamTestMvnFJdRuV3/TempSuite6425699306672987076.adam/referenceName=1/positionBin=26
/tmp/adamTestMvnFJdRuV3/TempSuite6425699306672987076.adam/referenceName=1/positionBin=26/part-00000-4a1efc4b-34b2-4b82-bfdf-ae293c9ec9be.c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite6425699306672987076.adam/referenceName=1/positionBin=26/.part-00000-4a1efc4b-34b2-4b82-bfdf-ae293c9ec9be.c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6425699306672987076.adam/referenceName=1/positionBin=240
/tmp/adamTestMvnFJdRuV3/TempSuite6425699306672987076.adam/referenceName=1/positionBin=240/part-00000-4a1efc4b-34b2-4b82-bfdf-ae293c9ec9be.c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite6425699306672987076.adam/referenceName=1/positionBin=240/.part-00000-4a1efc4b-34b2-4b82-bfdf-ae293c9ec9be.c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6425699306672987076.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/TempSuite6425699306672987076.adam/_partitionedByStartPos
/tmp/adamTestMvnFJdRuV3/TempSuite6425699306672987076.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite6425699306672987076.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6425699306672987076.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6425699306672987076.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6425699306672987076.adam/._partitionedByStartPos.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6425699306672987076.adam/referenceName=2
/tmp/adamTestMvnFJdRuV3/TempSuite6425699306672987076.adam/referenceName=2/positionBin=189
/tmp/adamTestMvnFJdRuV3/TempSuite6425699306672987076.adam/referenceName=2/positionBin=189/part-00000-4a1efc4b-34b2-4b82-bfdf-ae293c9ec9be.c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite6425699306672987076.adam/referenceName=2/positionBin=189/.part-00000-4a1efc4b-34b2-4b82-bfdf-ae293c9ec9be.c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6425699306672987076.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/1219630740403174693
/tmp/adamTestMvnFJdRuV3/1219630740403174693/readname_sorted.sam
/tmp/adamTestMvnFJdRuV3/1219630740403174693/.readname_sorted.sam.crc
/tmp/adamTestMvnFJdRuV3/TempSuite360558634422308641
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite8361832117115835059
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite8075557220639175235
/tmp/adamTestMvnFJdRuV3/TempSuite5831105420631229931.adam
/tmp/adamTestMvnFJdRuV3/TempSuite5831105420631229931.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite5831105420631229931.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5831105420631229931.adam/.part-00000-b2b57686-5a4c-4f4d-a290-8ad8aeb3dab6-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5831105420631229931.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite5831105420631229931.adam/part-00000-b2b57686-5a4c-4f4d-a290-8ad8aeb3dab6-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite5831105420631229931.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5831105420631229931.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5831105420631229931.adam/_header
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite1191543741349949524.fasta
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite1191543741349949524.fasta/_SUCCESS
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite1191543741349949524.fasta/part-00001
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite1191543741349949524.fasta/.part-00003.crc
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite1191543741349949524.fasta/part-00000
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite1191543741349949524.fasta/part-00003
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite1191543741349949524.fasta/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite1191543741349949524.fasta/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite1191543741349949524.fasta/part-00002
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite1191543741349949524.fasta/.part-00002.crc
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite1191543741349949524.fasta/.part-00001.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7269002114297436062.adam
/tmp/adamTestMvnFJdRuV3/TempSuite7269002114297436062.adam/part-00000-0caaa202-da46-4e21-a0e3-c080bd742691-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite7269002114297436062.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite7269002114297436062.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7269002114297436062.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7269002114297436062.adam/.part-00000-0caaa202-da46-4e21-a0e3-c080bd742691-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7269002114297436062.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite7269002114297436062.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7269002114297436062.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7269002114297436062.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/TempSuite7269002114297436062.adam/_header
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite4791532775423145907.narrowPeak
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite4791532775423145907.narrowPeak/_SUCCESS
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite4791532775423145907.narrowPeak/part-00001
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite4791532775423145907.narrowPeak/.part-00003.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite4791532775423145907.narrowPeak/part-00000
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite4791532775423145907.narrowPeak/part-00003
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite4791532775423145907.narrowPeak/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite4791532775423145907.narrowPeak/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite4791532775423145907.narrowPeak/part-00002
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite4791532775423145907.narrowPeak/.part-00002.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite4791532775423145907.narrowPeak/.part-00001.crc
/tmp/adamTestMvnFJdRuV3/.FeatureDatasetFunctionsSuite6393934370835944825.bed.crc
/tmp/adamTestMvnFJdRuV3/712108234411678902
/tmp/adamTestMvnFJdRuV3/712108234411678902/predicate.1.adam
/tmp/adamTestMvnFJdRuV3/712108234411678902/predicate.1.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/712108234411678902/predicate.1.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/712108234411678902/predicate.1.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/712108234411678902/predicate.1.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/712108234411678902/predicate.1.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/712108234411678902/predicate.1.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/712108234411678902/predicate.1.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/712108234411678902/predicate.1.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/712108234411678902/predicate.1.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/712108234411678902/predicate.1.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/712108234411678902/predicate.1.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/712108234411678902/predicate.1.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/712108234411678902/predicate.1.adam/_metadata
/tmp/adamTestMvnFJdRuV3/712108234411678902/predicate.1.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/TempSuite4576594741796678972
/tmp/adamTestMvnFJdRuV3/3354174870153738388
/tmp/adamTestMvnFJdRuV3/3354174870153738388/ordered.sam
/tmp/adamTestMvnFJdRuV3/3354174870153738388/.ordered.sam.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6542100209467445915
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite745943815963658381
/tmp/adamTestMvnFJdRuV3/unordered.sam7829191127217436384.sam
/tmp/adamTestMvnFJdRuV3/TempSuite6347040270946198445
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite2065617474971654022
/tmp/adamTestMvnFJdRuV3/bqsr1.sam431828306816204692.sam
/tmp/adamTestMvnFJdRuV3/6578921202920713726
/tmp/adamTestMvnFJdRuV3/6578921202920713726/sorted.vcf
/tmp/adamTestMvnFJdRuV3/6578921202920713726/.sorted.vcf.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2410483571445211440
/tmp/adamTestMvnFJdRuV3/TempSuite4066782705480456692
/tmp/adamTestMvnFJdRuV3/TempSuite824615258870135437
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite5894860863063767392.gtf
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite5894860863063767392.gtf/_SUCCESS
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite5894860863063767392.gtf/part-00001
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite5894860863063767392.gtf/.part-00003.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite5894860863063767392.gtf/part-00000
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite5894860863063767392.gtf/part-00003
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite5894860863063767392.gtf/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite5894860863063767392.gtf/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite5894860863063767392.gtf/part-00002
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite5894860863063767392.gtf/.part-00002.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite5894860863063767392.gtf/.part-00001.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7330046294286682530.adam
/tmp/adamTestMvnFJdRuV3/TempSuite7330046294286682530.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite7330046294286682530.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7330046294286682530.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite7330046294286682530.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7330046294286682530.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite7330046294286682530.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7330046294286682530.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite7330046294286682530.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7330046294286682530.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7330046294286682530.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite7330046294286682530.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7330046294286682530.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite7330046294286682530.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7330046294286682530.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7330046294286682530.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7330046294286682530.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite7330046294286682530.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite7330046294286682530.adam/_header
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite3089745817115274258.fastq
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite3089745817115274258.fastq/_SUCCESS
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite3089745817115274258.fastq/part-00001
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite3089745817115274258.fastq/.part-00003.crc
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite3089745817115274258.fastq/part-00000
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite3089745817115274258.fastq/part-00003
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite3089745817115274258.fastq/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite3089745817115274258.fastq/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite3089745817115274258.fastq/part-00002
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite3089745817115274258.fastq/.part-00002.crc
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite3089745817115274258.fastq/.part-00001.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2430159825651289047.fq
/tmp/adamTestMvnFJdRuV3/TempSuite2430159825651289047.fq/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite2430159825651289047.fq/part-00000
/tmp/adamTestMvnFJdRuV3/TempSuite2430159825651289047.fq/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2430159825651289047.fq/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite914039891600321637
/tmp/adamTestMvnFJdRuV3/TempSuite8588616021670529396.bed
/tmp/adamTestMvnFJdRuV3/TempSuite8588616021670529396.bed/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite8588616021670529396.bed/part-00001
/tmp/adamTestMvnFJdRuV3/TempSuite8588616021670529396.bed/.part-00003.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8588616021670529396.bed/part-00000
/tmp/adamTestMvnFJdRuV3/TempSuite8588616021670529396.bed/part-00003
/tmp/adamTestMvnFJdRuV3/TempSuite8588616021670529396.bed/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8588616021670529396.bed/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8588616021670529396.bed/part-00002
/tmp/adamTestMvnFJdRuV3/TempSuite8588616021670529396.bed/.part-00002.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8588616021670529396.bed/.part-00001.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1963526516627052444
/tmp/adamTestMvnFJdRuV3/small.vcf1726872936352875004.vcf
/tmp/adamTestMvnFJdRuV3/.FeatureDatasetFunctionsSuite8645814257680332110.interval_list.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8013718782302642061
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite5559778187241024668.bed
/tmp/adamTestMvnFJdRuV3/sample1.queryname.sam2835208430427323602.queryname.sam
/tmp/adamTestMvnFJdRuV3/TempSuite2060758506450233585.sam
/tmp/adamTestMvnFJdRuV3/TempSuite2060758506450233585.sam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite2060758506450233585.sam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2060758506450233585.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2060758506450233585.sam/part-r-00000.sam
/tmp/adamTestMvnFJdRuV3/TempSuite8187255164035820784.adam
/tmp/adamTestMvnFJdRuV3/TempSuite8187255164035820784.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite8187255164035820784.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8187255164035820784.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8187255164035820784.adam/part-00000-9055323f-982d-4f0e-b58c-b8869e971c2e-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite8187255164035820784.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite8187255164035820784.adam/.part-00000-9055323f-982d-4f0e-b58c-b8869e971c2e-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8187255164035820784.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8187255164035820784.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8187255164035820784.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/TempSuite8187255164035820784.adam/_header
/tmp/adamTestMvnFJdRuV3/TempSuite184965527819082
/tmp/adamTestMvnFJdRuV3/992221109877899182
/tmp/adamTestMvnFJdRuV3/992221109877899182/sorted-variants.lex.vcf
/tmp/adamTestMvnFJdRuV3/992221109877899182/.sorted-variants.lex.vcf.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7141993028108247434
/tmp/adamTestMvnFJdRuV3/TempSuite7774273342488810552.adam
/tmp/adamTestMvnFJdRuV3/TempSuite7774273342488810552.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite7774273342488810552.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7774273342488810552.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite7774273342488810552.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7774273342488810552.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite7774273342488810552.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7774273342488810552.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite7774273342488810552.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7774273342488810552.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7774273342488810552.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7774273342488810552.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite7774273342488810552.adam/_header
/tmp/adamTestMvnFJdRuV3/TempSuite7869628268550359667.adam
/tmp/adamTestMvnFJdRuV3/TempSuite7869628268550359667.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite7869628268550359667.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7869628268550359667.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7869628268550359667.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite7869628268550359667.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7869628268550359667.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite7869628268550359667.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7869628268550359667.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite7869628268550359667.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7869628268550359667.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7869628268550359667.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite7869628268550359667.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7869628268550359667.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite7869628268550359667.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7869628268550359667.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7869628268550359667.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/TempSuite7869628268550359667.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite7869628268550359667.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite5045588269263930604.adam
/tmp/adamTestMvnFJdRuV3/TempSuite5045588269263930604.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite5045588269263930604.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5045588269263930604.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5045588269263930604.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite5045588269263930604.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5045588269263930604.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite5045588269263930604.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5045588269263930604.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite5045588269263930604.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5045588269263930604.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5045588269263930604.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5045588269263930604.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/TempSuite5045588269263930604.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite5045588269263930604.adam/_header
/tmp/adamTestMvnFJdRuV3/TempSuite3821751700045477215.adam
/tmp/adamTestMvnFJdRuV3/TempSuite3821751700045477215.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite3821751700045477215.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3821751700045477215.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite3821751700045477215.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3821751700045477215.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite3821751700045477215.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3821751700045477215.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite3821751700045477215.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3821751700045477215.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3821751700045477215.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite3821751700045477215.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3821751700045477215.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite3821751700045477215.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3821751700045477215.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3821751700045477215.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3821751700045477215.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite3821751700045477215.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite3821751700045477215.adam/_header
/tmp/adamTestMvnFJdRuV3/TempSuite8998585102918982857
/tmp/adamTestMvnFJdRuV3/javaAC6564820387125630477
/tmp/adamTestMvnFJdRuV3/javaAC6564820387125630477/testRdd.slices.adam
/tmp/adamTestMvnFJdRuV3/javaAC6564820387125630477/testRdd.slices.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/javaAC6564820387125630477/testRdd.slices.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/javaAC6564820387125630477/testRdd.slices.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/javaAC6564820387125630477/testRdd.slices.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/javaAC6564820387125630477/testRdd.slices.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/javaAC6564820387125630477/testRdd.slices.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/javaAC6564820387125630477/testRdd.slices.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/javaAC6564820387125630477/testRdd.slices.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/javaAC6564820387125630477/testRdd.slices.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/javaAC6564820387125630477/testRdd.slices.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite2472223376235822086
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite1213495617090909874
/tmp/adamTestMvnFJdRuV3/TempSuite7666314422938710890.bed
/tmp/adamTestMvnFJdRuV3/TempSuite7666314422938710890.bed/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite7666314422938710890.bed/part-00000
/tmp/adamTestMvnFJdRuV3/TempSuite7666314422938710890.bed/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7666314422938710890.bed/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3109687594858479863
/tmp/adamTestMvnFJdRuV3/TempSuite343178745708300567.adam
/tmp/adamTestMvnFJdRuV3/TempSuite343178745708300567.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite343178745708300567.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite343178745708300567.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite343178745708300567.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite343178745708300567.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite343178745708300567.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite343178745708300567.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite343178745708300567.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite343178745708300567.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite343178745708300567.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite343178745708300567.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite343178745708300567.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/TempSuite343178745708300567.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite343178745708300567.adam/_header
/tmp/adamTestMvnFJdRuV3/.TempSuite8340905400717743978.sam.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6675436627978620739
/tmp/adamTestMvnFJdRuV3/.TempSuite4157108903467396640.bam.crc
/tmp/adamTestMvnFJdRuV3/noqual6207793483848148
/tmp/adamTestMvnFJdRuV3/noqual6207793483848148/noqualA.sam
/tmp/adamTestMvnFJdRuV3/noqual6207793483848148/noqualA.sam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/noqual6207793483848148/noqualA.sam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/noqual6207793483848148/noqualA.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnFJdRuV3/noqual6207793483848148/noqualA.sam/part-r-00000.sam
/tmp/adamTestMvnFJdRuV3/noqual6207793483848148/noqualB.fastq
/tmp/adamTestMvnFJdRuV3/noqual6207793483848148/noqualB.fastq/_SUCCESS
/tmp/adamTestMvnFJdRuV3/noqual6207793483848148/noqualB.fastq/part-00000
/tmp/adamTestMvnFJdRuV3/noqual6207793483848148/noqualB.fastq/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/noqual6207793483848148/noqualB.fastq/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8846722049373168125.adam
/tmp/adamTestMvnFJdRuV3/TempSuite8846722049373168125.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite8846722049373168125.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8846722049373168125.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8846722049373168125.adam/.part-00002-8621ab01-2932-4f06-978c-396df87fdad5-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8846722049373168125.adam/.part-00001-8621ab01-2932-4f06-978c-396df87fdad5-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8846722049373168125.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite8846722049373168125.adam/part-00002-8621ab01-2932-4f06-978c-396df87fdad5-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite8846722049373168125.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8846722049373168125.adam/.part-00000-8621ab01-2932-4f06-978c-396df87fdad5-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8846722049373168125.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8846722049373168125.adam/part-00000-8621ab01-2932-4f06-978c-396df87fdad5-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite8846722049373168125.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/TempSuite8846722049373168125.adam/part-00001-8621ab01-2932-4f06-978c-396df87fdad5-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite8846722049373168125.adam/_header
/tmp/adamTestMvnFJdRuV3/.FeatureDatasetFunctionsSuite1236535223233106536.gff3.crc
/tmp/adamTestMvnFJdRuV3/unsorted.sam4596503094522471506.sam
/tmp/adamTestMvnFJdRuV3/TempSuite2938525388962933440
/tmp/adamTestMvnFJdRuV3/TempSuite5970106962316176902
/tmp/adamTestMvnFJdRuV3/TempSuite5831105420631229931
/tmp/adamTestMvnFJdRuV3/TempSuite5268292528375608923.adam
/tmp/adamTestMvnFJdRuV3/TempSuite5268292528375608923.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite5268292528375608923.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5268292528375608923.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite5268292528375608923.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5268292528375608923.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite5268292528375608923.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5268292528375608923.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite5268292528375608923.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5268292528375608923.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5268292528375608923.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5268292528375608923.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite5268292528375608923.adam/_header
/tmp/adamTestMvnFJdRuV3/TempSuite3825456426210622640.bed
/tmp/adamTestMvnFJdRuV3/TempSuite3825456426210622640.bed/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite3825456426210622640.bed/part-00000
/tmp/adamTestMvnFJdRuV3/TempSuite3825456426210622640.bed/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3825456426210622640.bed/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/trinity.fa4887479327501150352.fa
/tmp/adamTestMvnFJdRuV3/sample_coverage.bed4927517186853320899.bed
/tmp/adamTestMvnFJdRuV3/TempSuite8604443819303596036
/tmp/adamTestMvnFJdRuV3/TempSuite83554216350175608
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite6431431204818629340
/tmp/adamTestMvnFJdRuV3/TempSuite3825456426210622640
/tmp/adamTestMvnFJdRuV3/TempSuite7666314422938710890
/tmp/adamTestMvnFJdRuV3/TempSuite4488215251402927696
/tmp/adamTestMvnFJdRuV3/TempSuite6590394403163699204
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3341923158397658977
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite6393934370835944825.bed
/tmp/adamTestMvnFJdRuV3/TempSuite3953117385026823377
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite624523688045984233
/tmp/adamTestMvnFJdRuV3/TempSuite914039891600321637.adam
/tmp/adamTestMvnFJdRuV3/TempSuite914039891600321637.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite914039891600321637.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite914039891600321637.adam/.part-00000-2b61fa75-e894-4a9e-96c5-ce06d783fab1-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite914039891600321637.adam/part-00000-2b61fa75-e894-4a9e-96c5-ce06d783fab1-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite914039891600321637.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite914039891600321637.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite914039891600321637.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite914039891600321637.adam/_header
/tmp/adamTestMvnFJdRuV3/TempSuite849009750383647266.bed
/tmp/adamTestMvnFJdRuV3/TempSuite849009750383647266.bed/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite849009750383647266.bed/part-00000
/tmp/adamTestMvnFJdRuV3/TempSuite849009750383647266.bed/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/TempSuite849009750383647266.bed/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3099133800425087938
/tmp/adamTestMvnFJdRuV3/TempSuite3393399175615264373
/tmp/adamTestMvnFJdRuV3/TempSuite7247978519188789158.adam
/tmp/adamTestMvnFJdRuV3/TempSuite7247978519188789158.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite7247978519188789158.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7247978519188789158.adam/part-00000-39306885-308f-4d1f-8679-5d830a61265d-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite7247978519188789158.adam/.part-00002-39306885-308f-4d1f-8679-5d830a61265d-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7247978519188789158.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/TempSuite7247978519188789158.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite7247978519188789158.adam/part-00002-39306885-308f-4d1f-8679-5d830a61265d-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite7247978519188789158.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7247978519188789158.adam/.part-00001-39306885-308f-4d1f-8679-5d830a61265d-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7247978519188789158.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7247978519188789158.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7247978519188789158.adam/.part-00000-39306885-308f-4d1f-8679-5d830a61265d-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7247978519188789158.adam/part-00001-39306885-308f-4d1f-8679-5d830a61265d-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite7247978519188789158.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/TempSuite119517590827912368.adam
/tmp/adamTestMvnFJdRuV3/TempSuite119517590827912368.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite119517590827912368.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite119517590827912368.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite119517590827912368.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite119517590827912368.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite119517590827912368.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite119517590827912368.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite119517590827912368.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite119517590827912368.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite119517590827912368.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite119517590827912368.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite119517590827912368.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite119517590827912368.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite119517590827912368.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite119517590827912368.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite119517590827912368.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnFJdRuV3/bqsr18559945613906936534
/tmp/adamTestMvnFJdRuV3/bqsr18559945613906936534/.bqsr1.sam.crc
/tmp/adamTestMvnFJdRuV3/bqsr18559945613906936534/bqsr1.sam
/tmp/adamTestMvnFJdRuV3/TempSuite1648369596370396507.adam
/tmp/adamTestMvnFJdRuV3/TempSuite1648369596370396507.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite1648369596370396507.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1648369596370396507.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite1648369596370396507.adam/part-00000-928b1901-b210-4fea-9edc-c755e4e785c6-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite1648369596370396507.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1648369596370396507.adam/.part-00000-928b1901-b210-4fea-9edc-c755e4e785c6-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3283474955692576210
/tmp/adamTestMvnFJdRuV3/TempSuite5774861967665453273
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite571536286070033619.gtf
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite571536286070033619.gtf/_SUCCESS
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite571536286070033619.gtf/part-00001
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite571536286070033619.gtf/.part-00003.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite571536286070033619.gtf/part-00000
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite571536286070033619.gtf/part-00003
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite571536286070033619.gtf/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite571536286070033619.gtf/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite571536286070033619.gtf/part-00002
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite571536286070033619.gtf/.part-00002.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite571536286070033619.gtf/.part-00001.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7986099818665755158.adam
/tmp/adamTestMvnFJdRuV3/TempSuite7986099818665755158.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite7986099818665755158.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7986099818665755158.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7986099818665755158.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite7986099818665755158.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7986099818665755158.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite7986099818665755158.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7986099818665755158.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite7986099818665755158.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7986099818665755158.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7986099818665755158.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7986099818665755158.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/TempSuite7986099818665755158.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite7986099818665755158.adam/_header
/tmp/adamTestMvnFJdRuV3/random.vcf8342911886558068306.vcf
/tmp/adamTestMvnFJdRuV3/TempSuite824615258870135437.bed
/tmp/adamTestMvnFJdRuV3/TempSuite824615258870135437.bed/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite824615258870135437.bed/part-00000
/tmp/adamTestMvnFJdRuV3/TempSuite824615258870135437.bed/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/TempSuite824615258870135437.bed/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1668150701835889275
/tmp/adamTestMvnFJdRuV3/TempSuite3200741566779153176
/tmp/adamTestMvnFJdRuV3/.FeatureDatasetFunctionsSuite2998631976415424655.bed.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4262460684449933744.adam
/tmp/adamTestMvnFJdRuV3/TempSuite4262460684449933744.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite4262460684449933744.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4262460684449933744.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite4262460684449933744.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4262460684449933744.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite4262460684449933744.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4262460684449933744.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite4262460684449933744.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4262460684449933744.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4262460684449933744.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4262460684449933744.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite4262460684449933744.adam/_header
/tmp/adamTestMvnFJdRuV3/8890486397513383613
/tmp/adamTestMvnFJdRuV3/8890486397513383613/.sorted.sam.crc
/tmp/adamTestMvnFJdRuV3/8890486397513383613/sorted.sam
/tmp/adamTestMvnFJdRuV3/TempSuite3273626751593371350
/tmp/adamTestMvnFJdRuV3/TempSuite5731853375061343515.bed
/tmp/adamTestMvnFJdRuV3/TempSuite5731853375061343515.bed/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite5731853375061343515.bed/part-00000
/tmp/adamTestMvnFJdRuV3/TempSuite5731853375061343515.bed/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5731853375061343515.bed/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7639887580828960401.adam
/tmp/adamTestMvnFJdRuV3/TempSuite7639887580828960401.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite7639887580828960401.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7639887580828960401.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite7639887580828960401.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7639887580828960401.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite7639887580828960401.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7639887580828960401.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite7639887580828960401.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7639887580828960401.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7639887580828960401.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7639887580828960401.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite7639887580828960401.adam/_header
/tmp/adamTestMvnFJdRuV3/TempSuite175808066867008222
/tmp/adamTestMvnFJdRuV3/TempSuite2794116819651169275
/tmp/adamTestMvnFJdRuV3/2129892291094737485
/tmp/adamTestMvnFJdRuV3/2129892291094737485/genotypes.adam
/tmp/adamTestMvnFJdRuV3/2129892291094737485/genotypes.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/2129892291094737485/genotypes.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/2129892291094737485/genotypes.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/2129892291094737485/genotypes.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/2129892291094737485/genotypes.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/2129892291094737485/genotypes.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/2129892291094737485/genotypes.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/2129892291094737485/genotypes.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/2129892291094737485/genotypes.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/2129892291094737485/genotypes.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/2129892291094737485/genotypes.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/2129892291094737485/genotypes.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/2129892291094737485/genotypes.adam/_metadata
/tmp/adamTestMvnFJdRuV3/2129892291094737485/genotypes.adam/_header
/tmp/adamTestMvnFJdRuV3/javaAC4834945955058173038
/tmp/adamTestMvnFJdRuV3/javaAC4834945955058173038/testRdd.read.adam
/tmp/adamTestMvnFJdRuV3/javaAC4834945955058173038/testRdd.read.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/javaAC4834945955058173038/testRdd.read.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/javaAC4834945955058173038/testRdd.read.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/javaAC4834945955058173038/testRdd.read.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/javaAC4834945955058173038/testRdd.read.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/javaAC4834945955058173038/testRdd.read.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/javaAC4834945955058173038/testRdd.read.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/javaAC4834945955058173038/testRdd.read.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/javaAC4834945955058173038/testRdd.read.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/javaAC4834945955058173038/testRdd.read.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/javaAC4834945955058173038/testRdd.read.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/javaAC4834945955058173038/testRdd.read.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/javaAC4834945955058173038/testRdd.read.adam/_metadata
/tmp/adamTestMvnFJdRuV3/javaAC4834945955058173038/testRdd.read.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/3409801154544053847
/tmp/adamTestMvnFJdRuV3/3409801154544053847/.sorted.lex.vcf.crc
/tmp/adamTestMvnFJdRuV3/3409801154544053847/sorted.lex.vcf
/tmp/adamTestMvnFJdRuV3/TempSuite946853599860300938
/tmp/adamTestMvnFJdRuV3/TempSuite7769099598641517199
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite7057247901877642235
/tmp/adamTestMvnFJdRuV3/TempSuite1648369596370396507
/tmp/adamTestMvnFJdRuV3/TempSuite7273262322616066034
/tmp/adamTestMvnFJdRuV3/TempSuite6570804284234828566.bed
/tmp/adamTestMvnFJdRuV3/TempSuite6570804284234828566.bed/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite6570804284234828566.bed/part-00000
/tmp/adamTestMvnFJdRuV3/TempSuite6570804284234828566.bed/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6570804284234828566.bed/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite7440098550589962456.fasta
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite7917067685311693466
/tmp/adamTestMvnFJdRuV3/TempSuite8439222997035487044.bed
/tmp/adamTestMvnFJdRuV3/TempSuite8439222997035487044.bed/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite8439222997035487044.bed/part-00000
/tmp/adamTestMvnFJdRuV3/TempSuite8439222997035487044.bed/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8439222997035487044.bed/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2385762870421843398.adam
/tmp/adamTestMvnFJdRuV3/TempSuite2385762870421843398.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite2385762870421843398.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2385762870421843398.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite2385762870421843398.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/TempSuite2385762870421843398.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2385762870421843398.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite2385762870421843398.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2385762870421843398.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2385762870421843398.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite2385762870421843398.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2385762870421843398.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2385762870421843398.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2385762870421843398.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite2385762870421843398.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/TempSuite6750380254748814692
/tmp/adamTestMvnFJdRuV3/TempSuite1866973162732222274.fa
/tmp/adamTestMvnFJdRuV3/TempSuite1866973162732222274.fa/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite1866973162732222274.fa/part-00000
/tmp/adamTestMvnFJdRuV3/TempSuite1866973162732222274.fa/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1866973162732222274.fa/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7451962512409808122.adam
/tmp/adamTestMvnFJdRuV3/TempSuite7451962512409808122.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite7451962512409808122.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7451962512409808122.adam/part-00002-23f67320-ea0f-4c76-b95a-29338b203807-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite7451962512409808122.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/TempSuite7451962512409808122.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite7451962512409808122.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7451962512409808122.adam/part-00001-23f67320-ea0f-4c76-b95a-29338b203807-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite7451962512409808122.adam/.part-00001-23f67320-ea0f-4c76-b95a-29338b203807-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7451962512409808122.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7451962512409808122.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7451962512409808122.adam/part-00000-23f67320-ea0f-4c76-b95a-29338b203807-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite7451962512409808122.adam/.part-00000-23f67320-ea0f-4c76-b95a-29338b203807-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7451962512409808122.adam/.part-00002-23f67320-ea0f-4c76-b95a-29338b203807-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7451962512409808122.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/6010179229900496280
/tmp/adamTestMvnFJdRuV3/6010179229900496280/predicate.2.adam
/tmp/adamTestMvnFJdRuV3/6010179229900496280/predicate.2.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/6010179229900496280/predicate.2.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/6010179229900496280/predicate.2.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/6010179229900496280/predicate.2.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/6010179229900496280/predicate.2.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/6010179229900496280/predicate.2.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/6010179229900496280/predicate.2.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/6010179229900496280/predicate.2.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/6010179229900496280/predicate.2.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/6010179229900496280/predicate.2.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/6010179229900496280/predicate.2.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/6010179229900496280/predicate.2.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/6010179229900496280/predicate.2.adam/_metadata
/tmp/adamTestMvnFJdRuV3/6010179229900496280/predicate.2.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/unordered.sam4513062855510746168.sam
/tmp/adamTestMvnFJdRuV3/random.vcf1343687582345222066.vcf
/tmp/adamTestMvnFJdRuV3/TempSuite1714310753326656070
/tmp/adamTestMvnFJdRuV3/TempSuite3673780340075132740
/tmp/adamTestMvnFJdRuV3/TempSuite5864808168676690110.bed
/tmp/adamTestMvnFJdRuV3/TempSuite5864808168676690110.bed/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite5864808168676690110.bed/part-00001
/tmp/adamTestMvnFJdRuV3/TempSuite5864808168676690110.bed/.part-00003.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5864808168676690110.bed/part-00000
/tmp/adamTestMvnFJdRuV3/TempSuite5864808168676690110.bed/part-00003
/tmp/adamTestMvnFJdRuV3/TempSuite5864808168676690110.bed/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5864808168676690110.bed/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5864808168676690110.bed/part-00002
/tmp/adamTestMvnFJdRuV3/TempSuite5864808168676690110.bed/.part-00002.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5864808168676690110.bed/.part-00001.crc
/tmp/adamTestMvnFJdRuV3/artificial.cram2572949891276648058.cram
/tmp/adamTestMvnFJdRuV3/reads126371959781761007370
/tmp/adamTestMvnFJdRuV3/reads126371959781761007370/reads12.fq
/tmp/adamTestMvnFJdRuV3/reads126371959781761007370/reads12.fq/_SUCCESS
/tmp/adamTestMvnFJdRuV3/reads126371959781761007370/reads12.fq/part-00000
/tmp/adamTestMvnFJdRuV3/reads126371959781761007370/reads12.fq/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/reads126371959781761007370/reads12.fq/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite5496070870948712938.narrowPeak
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite8572534419531378087
/tmp/adamTestMvnFJdRuV3/bqsr1.sam2228336373637750075.sam
/tmp/adamTestMvnFJdRuV3/TempSuite3453665660047231784
/tmp/adamTestMvnFJdRuV3/TempSuite6478491508832124501
/tmp/adamTestMvnFJdRuV3/.TempSuite7579078304277702063.bam.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8029470933550778612
/tmp/adamTestMvnFJdRuV3/TempSuite6567829281233532041.sam
/tmp/adamTestMvnFJdRuV3/TempSuite6567829281233532041.sam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite6567829281233532041.sam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6567829281233532041.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6567829281233532041.sam/part-r-00000.sam
/tmp/adamTestMvnFJdRuV3/TempSuite5109312162033577861.adam
/tmp/adamTestMvnFJdRuV3/TempSuite5109312162033577861.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite5109312162033577861.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5109312162033577861.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5109312162033577861.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite5109312162033577861.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5109312162033577861.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite5109312162033577861.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5109312162033577861.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite5109312162033577861.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5109312162033577861.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5109312162033577861.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite5109312162033577861.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5109312162033577861.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite5109312162033577861.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5109312162033577861.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5109312162033577861.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5109312162033577861.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/TempSuite5109312162033577861.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite5109312162033577861.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite5109312162033577861.adam/_header
/tmp/adamTestMvnFJdRuV3/TempSuite624485234124241286
/tmp/adamTestMvnFJdRuV3/TempSuite6517950168564108055.adam
/tmp/adamTestMvnFJdRuV3/TempSuite6517950168564108055.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite6517950168564108055.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6517950168564108055.adam/referenceName=1
/tmp/adamTestMvnFJdRuV3/TempSuite6517950168564108055.adam/referenceName=1/positionBin=0
/tmp/adamTestMvnFJdRuV3/TempSuite6517950168564108055.adam/referenceName=1/positionBin=0/.part-00000-c16126ca-cd29-41dc-80d6-f73783699656.c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6517950168564108055.adam/referenceName=1/positionBin=0/part-00000-c16126ca-cd29-41dc-80d6-f73783699656.c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite6517950168564108055.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6517950168564108055.adam/_partitionedByStartPos
/tmp/adamTestMvnFJdRuV3/TempSuite6517950168564108055.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite6517950168564108055.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6517950168564108055.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6517950168564108055.adam/._partitionedByStartPos.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6517950168564108055.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/TempSuite6517950168564108055.adam/_header
/tmp/adamTestMvnFJdRuV3/TempSuite14312324635376968
/tmp/adamTestMvnFJdRuV3/7481589097119569164
/tmp/adamTestMvnFJdRuV3/7481589097119569164/.gff3
/tmp/adamTestMvnFJdRuV3/7481589097119569164/..gff3.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3017913954624069684.bed
/tmp/adamTestMvnFJdRuV3/TempSuite3017913954624069684.bed/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite3017913954624069684.bed/part-00000
/tmp/adamTestMvnFJdRuV3/TempSuite3017913954624069684.bed/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3017913954624069684.bed/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3200741566779153176.adam
/tmp/adamTestMvnFJdRuV3/TempSuite3200741566779153176.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite3200741566779153176.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3200741566779153176.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3200741566779153176.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite3200741566779153176.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3200741566779153176.adam/part-00000-72531526-df3e-48b9-a1ff-70427536aa12-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite3200741566779153176.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3200741566779153176.adam/.part-00000-72531526-df3e-48b9-a1ff-70427536aa12-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3200741566779153176.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/TempSuite3200741566779153176.adam/_header
/tmp/adamTestMvnFJdRuV3/unsorted.sam773859046881587897.sam
/tmp/adamTestMvnFJdRuV3/TempSuite8998585102918982857.adam
/tmp/adamTestMvnFJdRuV3/TempSuite8998585102918982857.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite8998585102918982857.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8998585102918982857.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite8998585102918982857.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8998585102918982857.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite8998585102918982857.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8998585102918982857.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite8998585102918982857.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8998585102918982857.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8998585102918982857.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8998585102918982857.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite8998585102918982857.adam/_header
/tmp/adamTestMvnFJdRuV3/TempSuite2953253229356657924
/tmp/adamTestMvnFJdRuV3/TempSuite1345915403626039125
/tmp/adamTestMvnFJdRuV3/5034332800210899345
/tmp/adamTestMvnFJdRuV3/5034332800210899345/out.cram
/tmp/adamTestMvnFJdRuV3/5034332800210899345/.out.cram.crc
/tmp/adamTestMvnFJdRuV3/5034332800210899345/out.cram_head
/tmp/adamTestMvnFJdRuV3/5034332800210899345/out.cram_tail
/tmp/adamTestMvnFJdRuV3/5034332800210899345/out.cram_tail/_SUCCESS
/tmp/adamTestMvnFJdRuV3/5034332800210899345/out.cram_tail/part-r-00001.cram
/tmp/adamTestMvnFJdRuV3/5034332800210899345/out.cram_tail/.part-r-00003.cram.crc
/tmp/adamTestMvnFJdRuV3/5034332800210899345/out.cram_tail/part-r-00000.cram
/tmp/adamTestMvnFJdRuV3/5034332800210899345/out.cram_tail/.part-r-00002.cram.crc
/tmp/adamTestMvnFJdRuV3/5034332800210899345/out.cram_tail/part-r-00003.cram
/tmp/adamTestMvnFJdRuV3/5034332800210899345/out.cram_tail/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/5034332800210899345/out.cram_tail/.part-r-00001.cram.crc
/tmp/adamTestMvnFJdRuV3/5034332800210899345/out.cram_tail/part-r-00002.cram
/tmp/adamTestMvnFJdRuV3/5034332800210899345/out.cram_tail/.part-r-00000.cram.crc
/tmp/adamTestMvnFJdRuV3/5034332800210899345/.out.cram_head.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3955885815041069615
/tmp/adamTestMvnFJdRuV3/4417082308225550317
/tmp/adamTestMvnFJdRuV3/4417082308225550317/.out.sam_head.crc
/tmp/adamTestMvnFJdRuV3/4417082308225550317/out.sam_head
/tmp/adamTestMvnFJdRuV3/4417082308225550317/.out.sam.crc
/tmp/adamTestMvnFJdRuV3/4417082308225550317/out.sam
/tmp/adamTestMvnFJdRuV3/4417082308225550317/out.sam_tail
/tmp/adamTestMvnFJdRuV3/4417082308225550317/out.sam_tail/_SUCCESS
/tmp/adamTestMvnFJdRuV3/4417082308225550317/out.sam_tail/part-r-00001.sam
/tmp/adamTestMvnFJdRuV3/4417082308225550317/out.sam_tail/part-r-00002.sam
/tmp/adamTestMvnFJdRuV3/4417082308225550317/out.sam_tail/.part-r-00001.sam.crc
/tmp/adamTestMvnFJdRuV3/4417082308225550317/out.sam_tail/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/4417082308225550317/out.sam_tail/part-r-00003.sam
/tmp/adamTestMvnFJdRuV3/4417082308225550317/out.sam_tail/.part-r-00000.sam.crc
/tmp/adamTestMvnFJdRuV3/4417082308225550317/out.sam_tail/.part-r-00003.sam.crc
/tmp/adamTestMvnFJdRuV3/4417082308225550317/out.sam_tail/part-r-00000.sam
/tmp/adamTestMvnFJdRuV3/4417082308225550317/out.sam_tail/.part-r-00002.sam.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3854511325179625625
/tmp/adamTestMvnFJdRuV3/TempSuite4258105014268295772.bed
/tmp/adamTestMvnFJdRuV3/TempSuite4258105014268295772.bed/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite4258105014268295772.bed/part-00000
/tmp/adamTestMvnFJdRuV3/TempSuite4258105014268295772.bed/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4258105014268295772.bed/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8291220415728940651.adam
/tmp/adamTestMvnFJdRuV3/TempSuite8291220415728940651.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite8291220415728940651.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8291220415728940651.adam/.part-00000-ce134757-2cac-4766-86ab-e4c551eda156-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8291220415728940651.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/TempSuite8291220415728940651.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite8291220415728940651.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8291220415728940651.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8291220415728940651.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8291220415728940651.adam/part-00000-ce134757-2cac-4766-86ab-e4c551eda156-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite8291220415728940651.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3576610242314456465
/tmp/adamTestMvnFJdRuV3/7113356346852917868
/tmp/adamTestMvnFJdRuV3/7113356346852917868/.sorted.lex.vcf.crc
/tmp/adamTestMvnFJdRuV3/7113356346852917868/sorted.lex.vcf
/tmp/adamTestMvnFJdRuV3/TempSuite27212177266036391
/tmp/adamTestMvnFJdRuV3/unordered.sam3028735113889284066.sam
/tmp/adamTestMvnFJdRuV3/TempSuite184965527819082.adam
/tmp/adamTestMvnFJdRuV3/TempSuite184965527819082.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite184965527819082.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite184965527819082.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite184965527819082.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite184965527819082.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite184965527819082.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite184965527819082.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite184965527819082.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite184965527819082.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite184965527819082.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite2501767683364036975reads12.sam
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite6235353987759650850.narrowPeak
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite6235353987759650850.narrowPeak/_SUCCESS
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite6235353987759650850.narrowPeak/part-00001
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite6235353987759650850.narrowPeak/.part-00003.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite6235353987759650850.narrowPeak/part-00000
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite6235353987759650850.narrowPeak/part-00003
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite6235353987759650850.narrowPeak/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite6235353987759650850.narrowPeak/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite6235353987759650850.narrowPeak/part-00002
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite6235353987759650850.narrowPeak/.part-00002.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite6235353987759650850.narrowPeak/.part-00001.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6684157029370249890
/tmp/adamTestMvnFJdRuV3/TempSuite7141993028108247434.sam
/tmp/adamTestMvnFJdRuV3/TempSuite7141993028108247434.sam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite7141993028108247434.sam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7141993028108247434.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7141993028108247434.sam/part-r-00000.sam
/tmp/adamTestMvnFJdRuV3/TempSuite7309496558434219156
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite831934553068787490.narrowPeak
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite831934553068787490.narrowPeak/_SUCCESS
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite831934553068787490.narrowPeak/part-00001
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite831934553068787490.narrowPeak/.part-00003.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite831934553068787490.narrowPeak/part-00000
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite831934553068787490.narrowPeak/part-00003
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite831934553068787490.narrowPeak/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite831934553068787490.narrowPeak/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite831934553068787490.narrowPeak/part-00002
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite831934553068787490.narrowPeak/.part-00002.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite831934553068787490.narrowPeak/.part-00001.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3199108481034103061.adam
/tmp/adamTestMvnFJdRuV3/TempSuite3199108481034103061.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite3199108481034103061.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3199108481034103061.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3199108481034103061.adam/.part-00000-33918618-ae90-479a-bc5a-02bd3b79bc9d-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3199108481034103061.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite3199108481034103061.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3199108481034103061.adam/part-00000-33918618-ae90-479a-bc5a-02bd3b79bc9d-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite3199108481034103061.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3199108481034103061.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/TempSuite3199108481034103061.adam/_header
/tmp/adamTestMvnFJdRuV3/TempSuite7037862231790065000.adam
/tmp/adamTestMvnFJdRuV3/TempSuite7037862231790065000.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite7037862231790065000.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7037862231790065000.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite7037862231790065000.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/TempSuite7037862231790065000.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7037862231790065000.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite7037862231790065000.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7037862231790065000.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7037862231790065000.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite7037862231790065000.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7037862231790065000.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7037862231790065000.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7037862231790065000.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite7037862231790065000.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite6820910683185701502
/tmp/adamTestMvnFJdRuV3/TempSuite2853574144974643114.bam
/tmp/adamTestMvnFJdRuV3/TempSuite2853574144974643114.bam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite2853574144974643114.bam/part-r-00000.bam
/tmp/adamTestMvnFJdRuV3/TempSuite2853574144974643114.bam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2853574144974643114.bam/.part-r-00000.bam.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7196873385777624356
/tmp/adamTestMvnFJdRuV3/.ReadDatasetSuite6806100472807492189.fastq.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3529886989575677156
/tmp/adamTestMvnFJdRuV3/TempSuite2385762870421843398
/tmp/adamTestMvnFJdRuV3/small.vcf5906196610908938841.vcf
/tmp/adamTestMvnFJdRuV3/TempSuite2941399631810390884
/tmp/adamTestMvnFJdRuV3/TempSuite5268292528375608923
/tmp/adamTestMvnFJdRuV3/8632760960842125792
/tmp/adamTestMvnFJdRuV3/8632760960842125792/genotypes.adam
/tmp/adamTestMvnFJdRuV3/8632760960842125792/genotypes.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/8632760960842125792/genotypes.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/8632760960842125792/genotypes.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/8632760960842125792/genotypes.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/8632760960842125792/genotypes.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/8632760960842125792/genotypes.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/8632760960842125792/genotypes.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/8632760960842125792/genotypes.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/8632760960842125792/genotypes.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/8632760960842125792/genotypes.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/8632760960842125792/genotypes.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/8632760960842125792/genotypes.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/8632760960842125792/genotypes.adam/_metadata
/tmp/adamTestMvnFJdRuV3/8632760960842125792/genotypes.adam/_header
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite2430075091143365327
/tmp/adamTestMvnFJdRuV3/TempSuite3200195172807956681.bed
/tmp/adamTestMvnFJdRuV3/TempSuite3200195172807956681.bed/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite3200195172807956681.bed/part-00000
/tmp/adamTestMvnFJdRuV3/TempSuite3200195172807956681.bed/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3200195172807956681.bed/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4403951937069567440
/tmp/adamTestMvnFJdRuV3/TempSuite2485744506455801690.adam
/tmp/adamTestMvnFJdRuV3/TempSuite2485744506455801690.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite2485744506455801690.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2485744506455801690.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2485744506455801690.adam/part-00000-878d998e-5779-43aa-81a8-70707942774d-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite2485744506455801690.adam/.part-00000-878d998e-5779-43aa-81a8-70707942774d-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2485744506455801690.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite2485744506455801690.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2485744506455801690.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2485744506455801690.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/TempSuite2485744506455801690.adam/_header
/tmp/adamTestMvnFJdRuV3/TempSuite2853574144974643114
/tmp/adamTestMvnFJdRuV3/artificial.sam7619049140116031323.sam
/tmp/adamTestMvnFJdRuV3/sorted-variants.lex.vcf9046207514777801497.lex.vcf
/tmp/adamTestMvnFJdRuV3/TempSuite9164644538508938032.adam
/tmp/adamTestMvnFJdRuV3/TempSuite9164644538508938032.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite9164644538508938032.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite9164644538508938032.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite9164644538508938032.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite9164644538508938032.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite9164644538508938032.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite9164644538508938032.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite9164644538508938032.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite9164644538508938032.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite9164644538508938032.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite9164644538508938032.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite9164644538508938032.adam/_header
/tmp/adamTestMvnFJdRuV3/6971350962878648550
/tmp/adamTestMvnFJdRuV3/6971350962878648550/artificial.cram
/tmp/adamTestMvnFJdRuV3/6971350962878648550/artificial.cram/_SUCCESS
/tmp/adamTestMvnFJdRuV3/6971350962878648550/artificial.cram/part-r-00000.cram
/tmp/adamTestMvnFJdRuV3/6971350962878648550/artificial.cram/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/6971350962878648550/artificial.cram/.part-r-00000.cram.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8308914871270616814.adam
/tmp/adamTestMvnFJdRuV3/TempSuite8308914871270616814.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite8308914871270616814.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8308914871270616814.adam/.part-00000-54699e2b-1a81-4856-8d0e-a99f6021a3a9-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8308914871270616814.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/TempSuite8308914871270616814.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite8308914871270616814.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8308914871270616814.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8308914871270616814.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8308914871270616814.adam/part-00000-54699e2b-1a81-4856-8d0e-a99f6021a3a9-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite8308914871270616814.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/random.vcf4660490181888363980.vcf
/tmp/adamTestMvnFJdRuV3/TempSuite7103881511930225072.fq
/tmp/adamTestMvnFJdRuV3/TempSuite7103881511930225072.fq/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite7103881511930225072.fq/part-00000
/tmp/adamTestMvnFJdRuV3/TempSuite7103881511930225072.fq/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7103881511930225072.fq/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite590001865456986171
/tmp/adamTestMvnFJdRuV3/TempSuite6125257301082359110
/tmp/adamTestMvnFJdRuV3/unordered.sam179957562365358909.sam
/tmp/adamTestMvnFJdRuV3/TempSuite7652263070546598538
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite2974891778639212389
/tmp/adamTestMvnFJdRuV3/TempSuite6772140507236520536.sam
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3523747791826777137
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3341923158397658977.gff3
/tmp/adamTestMvnFJdRuV3/2452440397288738165
/tmp/adamTestMvnFJdRuV3/2452440397288738165/artificial.cram
/tmp/adamTestMvnFJdRuV3/2452440397288738165/artificial.cram/_SUCCESS
/tmp/adamTestMvnFJdRuV3/2452440397288738165/artificial.cram/part-r-00000.cram
/tmp/adamTestMvnFJdRuV3/2452440397288738165/artificial.cram/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/2452440397288738165/artificial.cram/.part-r-00000.cram.crc
/tmp/adamTestMvnFJdRuV3/1254879478243843595
/tmp/adamTestMvnFJdRuV3/1254879478243843595/.sorted.lex.vcf.crc
/tmp/adamTestMvnFJdRuV3/1254879478243843595/sorted.lex.vcf
/tmp/adamTestMvnFJdRuV3/.TempSuite8499993084513017323_2.fq.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8499993084513017323
/tmp/adamTestMvnFJdRuV3/TempSuite1518432335427295499.adam
/tmp/adamTestMvnFJdRuV3/TempSuite1518432335427295499.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite1518432335427295499.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1518432335427295499.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1518432335427295499.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite1518432335427295499.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1518432335427295499.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite1518432335427295499.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1518432335427295499.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite1518432335427295499.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1518432335427295499.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1518432335427295499.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite1518432335427295499.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1518432335427295499.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite1518432335427295499.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1518432335427295499.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1518432335427295499.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/TempSuite1518432335427295499.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite1518432335427295499.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite8075557220639175235.gff3
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite8075557220639175235.gff3/_SUCCESS
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite8075557220639175235.gff3/part-00001
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite8075557220639175235.gff3/.part-00003.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite8075557220639175235.gff3/part-00000
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite8075557220639175235.gff3/part-00003
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite8075557220639175235.gff3/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite8075557220639175235.gff3/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite8075557220639175235.gff3/part-00002
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite8075557220639175235.gff3/.part-00002.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite8075557220639175235.gff3/.part-00001.crc
/tmp/adamTestMvnFJdRuV3/6307672638540251402
/tmp/adamTestMvnFJdRuV3/6307672638540251402/.out.sam_head.crc
/tmp/adamTestMvnFJdRuV3/6307672638540251402/out.sam_head
/tmp/adamTestMvnFJdRuV3/6307672638540251402/.out.sam.crc
/tmp/adamTestMvnFJdRuV3/6307672638540251402/out.sam
/tmp/adamTestMvnFJdRuV3/6307672638540251402/out.sam_tail
/tmp/adamTestMvnFJdRuV3/6307672638540251402/out.sam_tail/_SUCCESS
/tmp/adamTestMvnFJdRuV3/6307672638540251402/out.sam_tail/part-r-00001.sam
/tmp/adamTestMvnFJdRuV3/6307672638540251402/out.sam_tail/part-r-00002.sam
/tmp/adamTestMvnFJdRuV3/6307672638540251402/out.sam_tail/.part-r-00001.sam.crc
/tmp/adamTestMvnFJdRuV3/6307672638540251402/out.sam_tail/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/6307672638540251402/out.sam_tail/part-r-00003.sam
/tmp/adamTestMvnFJdRuV3/6307672638540251402/out.sam_tail/.part-r-00000.sam.crc
/tmp/adamTestMvnFJdRuV3/6307672638540251402/out.sam_tail/.part-r-00003.sam.crc
/tmp/adamTestMvnFJdRuV3/6307672638540251402/out.sam_tail/part-r-00000.sam
/tmp/adamTestMvnFJdRuV3/6307672638540251402/out.sam_tail/.part-r-00002.sam.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite5574793000316443140.gtf
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite5574793000316443140.gtf/_SUCCESS
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite5574793000316443140.gtf/part-00001
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite5574793000316443140.gtf/.part-00003.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite5574793000316443140.gtf/part-00000
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite5574793000316443140.gtf/part-00003
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite5574793000316443140.gtf/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite5574793000316443140.gtf/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite5574793000316443140.gtf/part-00002
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite5574793000316443140.gtf/.part-00002.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite5574793000316443140.gtf/.part-00001.crc
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite7440098550589962456
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite3019207562745902715
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite4791532775423145907
/tmp/adamTestMvnFJdRuV3/TempSuite99457630214124314
/tmp/adamTestMvnFJdRuV3/TempSuite2671545049990549903
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite1974927402567402529
/tmp/adamTestMvnFJdRuV3/TempSuite4571285669478979516
/tmp/adamTestMvnFJdRuV3/TempSuite8630020705351485089.adam
/tmp/adamTestMvnFJdRuV3/TempSuite8630020705351485089.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite8630020705351485089.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8630020705351485089.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8630020705351485089.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite8630020705351485089.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8630020705351485089.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite8630020705351485089.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8630020705351485089.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite8630020705351485089.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8630020705351485089.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8630020705351485089.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8630020705351485089.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/TempSuite8630020705351485089.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite8630020705351485089.adam/_header
/tmp/adamTestMvnFJdRuV3/8783133861439325228
/tmp/adamTestMvnFJdRuV3/8783133861439325228/unordered.adam
/tmp/adamTestMvnFJdRuV3/8783133861439325228/unordered.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/8783133861439325228/unordered.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/8783133861439325228/unordered.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/8783133861439325228/unordered.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/8783133861439325228/unordered.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/8783133861439325228/unordered.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/8783133861439325228/unordered.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/8783133861439325228/unordered.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/8783133861439325228/unordered.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/8783133861439325228/unordered.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/8783133861439325228/unordered.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/8783133861439325228/unordered.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/8783133861439325228/unordered.adam/_metadata
/tmp/adamTestMvnFJdRuV3/8783133861439325228/unordered.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite4635851203878105120
/tmp/adamTestMvnFJdRuV3/TempSuite901070796081771603
/tmp/adamTestMvnFJdRuV3/unordered.sam4345594154123951996.sam
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite624523688045984233.gtf
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite624523688045984233.gtf/_SUCCESS
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite624523688045984233.gtf/part-00001
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite624523688045984233.gtf/.part-00003.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite624523688045984233.gtf/part-00000
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite624523688045984233.gtf/part-00003
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite624523688045984233.gtf/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite624523688045984233.gtf/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite624523688045984233.gtf/part-00002
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite624523688045984233.gtf/.part-00002.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite624523688045984233.gtf/.part-00001.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5942032975207451643
/tmp/adamTestMvnFJdRuV3/TempSuite8053159812092807291
/tmp/adamTestMvnFJdRuV3/TempSuite5970106962316176902.bed
/tmp/adamTestMvnFJdRuV3/TempSuite5970106962316176902.bed/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite5970106962316176902.bed/part-00000
/tmp/adamTestMvnFJdRuV3/TempSuite5970106962316176902.bed/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5970106962316176902.bed/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2386419325006687140
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite7476330519202798986
/tmp/adamTestMvnFJdRuV3/TempSuite2736245027118150635.vcf
/tmp/adamTestMvnFJdRuV3/TempSuite2736245027118150635.vcf/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite2736245027118150635.vcf/part-r-00000
/tmp/adamTestMvnFJdRuV3/TempSuite2736245027118150635.vcf/.part-r-00000.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2736245027118150635.vcf/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4924789032713323726
/tmp/adamTestMvnFJdRuV3/1361735191312366247
/tmp/adamTestMvnFJdRuV3/1361735191312366247/small.vcf.bgz
/tmp/adamTestMvnFJdRuV3/1361735191312366247/.small.vcf.bgz.crc
/tmp/adamTestMvnFJdRuV3/TempSuite409588221409286147
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite1219616087609213990
/tmp/adamTestMvnFJdRuV3/.FeatureDatasetFunctionsSuite5559778187241024668.bed.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4106000892843926439.adam
/tmp/adamTestMvnFJdRuV3/TempSuite4106000892843926439.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite4106000892843926439.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4106000892843926439.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4106000892843926439.adam/part-r-00004.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite4106000892843926439.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite4106000892843926439.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4106000892843926439.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite4106000892843926439.adam/.part-r-00004.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4106000892843926439.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4106000892843926439.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite4106000892843926439.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4106000892843926439.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4106000892843926439.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite4106000892843926439.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4106000892843926439.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite4106000892843926439.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4106000892843926439.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4106000892843926439.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/TempSuite4106000892843926439.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite4106000892843926439.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite7639931635200676233
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite1903699193579862888.bed
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite2736306264435113252
/tmp/adamTestMvnFJdRuV3/TempSuite8053159812092807291.bed
/tmp/adamTestMvnFJdRuV3/TempSuite8053159812092807291.bed/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite8053159812092807291.bed/part-00001
/tmp/adamTestMvnFJdRuV3/TempSuite8053159812092807291.bed/.part-00003.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8053159812092807291.bed/part-00000
/tmp/adamTestMvnFJdRuV3/TempSuite8053159812092807291.bed/part-00003
/tmp/adamTestMvnFJdRuV3/TempSuite8053159812092807291.bed/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8053159812092807291.bed/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8053159812092807291.bed/part-00002
/tmp/adamTestMvnFJdRuV3/TempSuite8053159812092807291.bed/.part-00002.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8053159812092807291.bed/.part-00001.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite7004382496025378432.gtf
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite7004382496025378432.gtf/_SUCCESS
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite7004382496025378432.gtf/part-00001
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite7004382496025378432.gtf/.part-00003.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite7004382496025378432.gtf/part-00000
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite7004382496025378432.gtf/part-00003
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite7004382496025378432.gtf/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite7004382496025378432.gtf/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite7004382496025378432.gtf/part-00002
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite7004382496025378432.gtf/.part-00002.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite7004382496025378432.gtf/.part-00001.crc
/tmp/adamTestMvnFJdRuV3/reads12637565128585597099
/tmp/adamTestMvnFJdRuV3/reads12637565128585597099/reads12.fq
/tmp/adamTestMvnFJdRuV3/reads12637565128585597099/reads12.fq/_SUCCESS
/tmp/adamTestMvnFJdRuV3/reads12637565128585597099/reads12.fq/part-00000
/tmp/adamTestMvnFJdRuV3/reads12637565128585597099/reads12.fq/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/reads12637565128585597099/reads12.fq/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/5251467646367058484
/tmp/adamTestMvnFJdRuV3/5251467646367058484/sorted-variants.vcf
/tmp/adamTestMvnFJdRuV3/5251467646367058484/.sorted-variants.vcf.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8393585597700755897
/tmp/adamTestMvnFJdRuV3/TempSuite603796451549920214.adam
/tmp/adamTestMvnFJdRuV3/TempSuite603796451549920214.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite603796451549920214.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite603796451549920214.adam/part-00000-3dc15ebf-8d29-4f3c-8dff-6be5f5656ea5-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite603796451549920214.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/TempSuite603796451549920214.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite603796451549920214.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite603796451549920214.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite603796451549920214.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite603796451549920214.adam/.part-00000-3dc15ebf-8d29-4f3c-8dff-6be5f5656ea5-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite603796451549920214.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/TempSuite8340905400717743978.sam
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite4882940254927142681
/tmp/adamTestMvnFJdRuV3/TempSuite8013718782302642061.adam
/tmp/adamTestMvnFJdRuV3/TempSuite8013718782302642061.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite8013718782302642061.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8013718782302642061.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite8013718782302642061.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/TempSuite8013718782302642061.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8013718782302642061.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite8013718782302642061.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8013718782302642061.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8013718782302642061.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite8013718782302642061.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8013718782302642061.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8013718782302642061.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8013718782302642061.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite8013718782302642061.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/TempSuite8884573897398366913
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite2065617474971654022.adam
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite2065617474971654022.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite2065617474971654022.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite2065617474971654022.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite2065617474971654022.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite2065617474971654022.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite2065617474971654022.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite2065617474971654022.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite2065617474971654022.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite2065617474971654022.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite2065617474971654022.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite2065617474971654022.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite2065617474971654022.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite2065617474971654022.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite2065617474971654022.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite2065617474971654022.adam/_metadata
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite2065617474971654022.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite7340940918851244523
/tmp/adamTestMvnFJdRuV3/TempSuite4525419714595241887
/tmp/adamTestMvnFJdRuV3/TempSuite6675436627978620739.sam
/tmp/adamTestMvnFJdRuV3/TempSuite6675436627978620739.sam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite6675436627978620739.sam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6675436627978620739.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6675436627978620739.sam/part-r-00000.sam
/tmp/adamTestMvnFJdRuV3/TempSuite14312324635376968.bam
/tmp/adamTestMvnFJdRuV3/TempSuite14312324635376968.bam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite14312324635376968.bam/part-r-00000.bam
/tmp/adamTestMvnFJdRuV3/TempSuite14312324635376968.bam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite14312324635376968.bam/.part-r-00000.bam.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6106529514318311510.fa
/tmp/adamTestMvnFJdRuV3/TempSuite6106529514318311510.fa/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite6106529514318311510.fa/part-00000
/tmp/adamTestMvnFJdRuV3/TempSuite6106529514318311510.fa/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6106529514318311510.fa/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite9164644538508938032
/tmp/adamTestMvnFJdRuV3/.TempSuite8116052284808651830.fq.crc
/tmp/adamTestMvnFJdRuV3/6295134403067284544
/tmp/adamTestMvnFJdRuV3/6295134403067284544/binned.adam
/tmp/adamTestMvnFJdRuV3/6295134403067284544/binned.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/6295134403067284544/binned.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/6295134403067284544/binned.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/6295134403067284544/binned.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/6295134403067284544/binned.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/6295134403067284544/binned.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/6295134403067284544/binned.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/6295134403067284544/binned.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/6295134403067284544/binned.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/6295134403067284544/binned.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/6295134403067284544/binned.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/6295134403067284544/binned.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/6295134403067284544/binned.adam/_metadata
/tmp/adamTestMvnFJdRuV3/6295134403067284544/binned.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite7057247901877642235.fasta
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite7057247901877642235.fasta/_SUCCESS
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite7057247901877642235.fasta/part-00001
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite7057247901877642235.fasta/.part-00003.crc
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite7057247901877642235.fasta/part-00000
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite7057247901877642235.fasta/part-00003
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite7057247901877642235.fasta/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite7057247901877642235.fasta/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite7057247901877642235.fasta/part-00002
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite7057247901877642235.fasta/.part-00002.crc
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite7057247901877642235.fasta/.part-00001.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7242601365808561947
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite7917067685311693466.bed
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite7917067685311693466.bed/_SUCCESS
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite7917067685311693466.bed/part-00001
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite7917067685311693466.bed/.part-00003.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite7917067685311693466.bed/part-00000
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite7917067685311693466.bed/part-00003
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite7917067685311693466.bed/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite7917067685311693466.bed/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite7917067685311693466.bed/part-00002
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite7917067685311693466.bed/.part-00002.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite7917067685311693466.bed/.part-00001.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7803948975132062989.adam
/tmp/adamTestMvnFJdRuV3/TempSuite7803948975132062989.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite7803948975132062989.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7803948975132062989.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite7803948975132062989.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7803948975132062989.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite7803948975132062989.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7803948975132062989.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite7803948975132062989.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7803948975132062989.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7803948975132062989.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7803948975132062989.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite7803948975132062989.adam/_header
/tmp/adamTestMvnFJdRuV3/TempSuite5253625985623385202
/tmp/adamTestMvnFJdRuV3/TempSuite7103881511930225072
/tmp/adamTestMvnFJdRuV3/sorted-variants.vcf1851558851044940206.vcf
/tmp/adamTestMvnFJdRuV3/.FeatureDatasetFunctionsSuite3441527704067752232.interval_list.crc
/tmp/adamTestMvnFJdRuV3/.SliceDatasetSuite2438444251895632749.fasta.crc
/tmp/adamTestMvnFJdRuV3/2820203886719476120
/tmp/adamTestMvnFJdRuV3/2820203886719476120/ordered.sam
/tmp/adamTestMvnFJdRuV3/2820203886719476120/.ordered.sam.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1324643930817989336
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite1236178471817459378.adam
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite1236178471817459378.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite1236178471817459378.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite1236178471817459378.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite1236178471817459378.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite1236178471817459378.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite1236178471817459378.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite1236178471817459378.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite1236178471817459378.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite1236178471817459378.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite1236178471817459378.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite1236178471817459378.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite1236178471817459378.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite1236178471817459378.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite1236178471817459378.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite1236178471817459378.adam/_metadata
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite1236178471817459378.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite7340940918851244523.adam
/tmp/adamTestMvnFJdRuV3/TempSuite7340940918851244523.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite7340940918851244523.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7340940918851244523.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite7340940918851244523.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/TempSuite7340940918851244523.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7340940918851244523.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite7340940918851244523.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7340940918851244523.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7340940918851244523.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite7340940918851244523.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7340940918851244523.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7340940918851244523.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7340940918851244523.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite7340940918851244523.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite8361832117115835059.interval_list
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite8361832117115835059.interval_list/_SUCCESS
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite8361832117115835059.interval_list/part-00001
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite8361832117115835059.interval_list/.part-00003.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite8361832117115835059.interval_list/part-00000
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite8361832117115835059.interval_list/part-00003
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite8361832117115835059.interval_list/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite8361832117115835059.interval_list/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite8361832117115835059.interval_list/part-00002
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite8361832117115835059.interval_list/.part-00002.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite8361832117115835059.interval_list/.part-00001.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2986544090710293032
/tmp/adamTestMvnFJdRuV3/TempSuite4142836752163202344.adam
/tmp/adamTestMvnFJdRuV3/TempSuite4142836752163202344.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite4142836752163202344.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4142836752163202344.adam/referenceName=1
/tmp/adamTestMvnFJdRuV3/TempSuite4142836752163202344.adam/referenceName=1/positionBin=0
/tmp/adamTestMvnFJdRuV3/TempSuite4142836752163202344.adam/referenceName=1/positionBin=0/.part-00000-b123fd3e-f76c-4ee1-b9e6-0a2e123f0c37.c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4142836752163202344.adam/referenceName=1/positionBin=0/part-00000-b123fd3e-f76c-4ee1-b9e6-0a2e123f0c37.c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite4142836752163202344.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4142836752163202344.adam/referenceName=13
/tmp/adamTestMvnFJdRuV3/TempSuite4142836752163202344.adam/referenceName=13/positionBin=0
/tmp/adamTestMvnFJdRuV3/TempSuite4142836752163202344.adam/referenceName=13/positionBin=0/.part-00000-b123fd3e-f76c-4ee1-b9e6-0a2e123f0c37.c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4142836752163202344.adam/referenceName=13/positionBin=0/part-00000-b123fd3e-f76c-4ee1-b9e6-0a2e123f0c37.c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite4142836752163202344.adam/_partitionedByStartPos
/tmp/adamTestMvnFJdRuV3/TempSuite4142836752163202344.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite4142836752163202344.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4142836752163202344.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4142836752163202344.adam/._partitionedByStartPos.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4142836752163202344.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/TempSuite4142836752163202344.adam/referenceName=2
/tmp/adamTestMvnFJdRuV3/TempSuite4142836752163202344.adam/referenceName=2/positionBin=0
/tmp/adamTestMvnFJdRuV3/TempSuite4142836752163202344.adam/referenceName=2/positionBin=0/.part-00000-b123fd3e-f76c-4ee1-b9e6-0a2e123f0c37.c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4142836752163202344.adam/referenceName=2/positionBin=0/part-00000-b123fd3e-f76c-4ee1-b9e6-0a2e123f0c37.c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite4142836752163202344.adam/_header
/tmp/adamTestMvnFJdRuV3/trinity.fa4242030062027017930.fa
/tmp/adamTestMvnFJdRuV3/7779766992907676677
/tmp/adamTestMvnFJdRuV3/7779766992907676677/genotypes.lex.adam
/tmp/adamTestMvnFJdRuV3/7779766992907676677/genotypes.lex.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/7779766992907676677/genotypes.lex.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/7779766992907676677/genotypes.lex.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/7779766992907676677/genotypes.lex.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/7779766992907676677/genotypes.lex.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/7779766992907676677/genotypes.lex.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/7779766992907676677/genotypes.lex.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/7779766992907676677/genotypes.lex.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/7779766992907676677/genotypes.lex.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/7779766992907676677/genotypes.lex.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/7779766992907676677/genotypes.lex.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/7779766992907676677/genotypes.lex.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/7779766992907676677/genotypes.lex.adam/_metadata
/tmp/adamTestMvnFJdRuV3/7779766992907676677/genotypes.lex.adam/_header
/tmp/adamTestMvnFJdRuV3/TempSuite894095149894594875.bed
/tmp/adamTestMvnFJdRuV3/TempSuite894095149894594875.bed/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite894095149894594875.bed/part-00000
/tmp/adamTestMvnFJdRuV3/TempSuite894095149894594875.bed/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/TempSuite894095149894594875.bed/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4281792501647926679
/tmp/adamTestMvnFJdRuV3/TempSuite2188275685702974268
/tmp/adamTestMvnFJdRuV3/8822304492930505261
/tmp/adamTestMvnFJdRuV3/8822304492930505261/.unordered.bam.crc
/tmp/adamTestMvnFJdRuV3/8822304492930505261/unordered.bam
/tmp/adamTestMvnFJdRuV3/TempSuite7639931635200676233.adam
/tmp/adamTestMvnFJdRuV3/TempSuite7639931635200676233.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite7639931635200676233.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7639931635200676233.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite7639931635200676233.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/TempSuite7639931635200676233.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7639931635200676233.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite7639931635200676233.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7639931635200676233.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7639931635200676233.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite7639931635200676233.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7639931635200676233.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7639931635200676233.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7639931635200676233.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite7639931635200676233.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/TempSuite2357740183562773106.bed
/tmp/adamTestMvnFJdRuV3/TempSuite2357740183562773106.bed/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite2357740183562773106.bed/part-00000
/tmp/adamTestMvnFJdRuV3/TempSuite2357740183562773106.bed/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2357740183562773106.bed/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3109687594858479863.narrowPeak
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3109687594858479863.narrowPeak/_SUCCESS
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3109687594858479863.narrowPeak/part-00001
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3109687594858479863.narrowPeak/.part-00003.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3109687594858479863.narrowPeak/part-00000
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3109687594858479863.narrowPeak/part-00003
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3109687594858479863.narrowPeak/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3109687594858479863.narrowPeak/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3109687594858479863.narrowPeak/part-00002
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3109687594858479863.narrowPeak/.part-00002.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3109687594858479863.narrowPeak/.part-00001.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3443045534717278254
/tmp/adamTestMvnFJdRuV3/TempSuite8815654380947752624
/tmp/adamTestMvnFJdRuV3/sorted.sam1885445237737981504.sam
/tmp/adamTestMvnFJdRuV3/TempSuite7402432711149864255.adam
/tmp/adamTestMvnFJdRuV3/TempSuite7402432711149864255.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite7402432711149864255.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7402432711149864255.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite7402432711149864255.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7402432711149864255.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite7402432711149864255.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7402432711149864255.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite7402432711149864255.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7402432711149864255.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7402432711149864255.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite7402432711149864255.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7402432711149864255.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite7402432711149864255.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7402432711149864255.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7402432711149864255.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7402432711149864255.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite7402432711149864255.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite7402432711149864255.adam/_header
/tmp/adamTestMvnFJdRuV3/TempSuite4238620409268305064.bed
/tmp/adamTestMvnFJdRuV3/TempSuite4238620409268305064.bed/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite4238620409268305064.bed/part-00001
/tmp/adamTestMvnFJdRuV3/TempSuite4238620409268305064.bed/.part-00003.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4238620409268305064.bed/part-00000
/tmp/adamTestMvnFJdRuV3/TempSuite4238620409268305064.bed/part-00003
/tmp/adamTestMvnFJdRuV3/TempSuite4238620409268305064.bed/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4238620409268305064.bed/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4238620409268305064.bed/part-00002
/tmp/adamTestMvnFJdRuV3/TempSuite4238620409268305064.bed/.part-00002.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4238620409268305064.bed/.part-00001.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8393585597700755897.fq
/tmp/adamTestMvnFJdRuV3/TempSuite8393585597700755897.fq/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite8393585597700755897.fq/part-00000
/tmp/adamTestMvnFJdRuV3/TempSuite8393585597700755897.fq/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8393585597700755897.fq/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5731853375061343515
/tmp/adamTestMvnFJdRuV3/bqsr1.sam8430782389884570153.sam
/tmp/adamTestMvnFJdRuV3/TempSuite3994426443441695476
/tmp/adamTestMvnFJdRuV3/TempSuite7709996946053268279
/tmp/adamTestMvnFJdRuV3/TempSuite5104641671291603324
/tmp/adamTestMvnFJdRuV3/TempSuite4589280631602038459.bed
/tmp/adamTestMvnFJdRuV3/TempSuite4589280631602038459.bed/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite4589280631602038459.bed/part-00000
/tmp/adamTestMvnFJdRuV3/TempSuite4589280631602038459.bed/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4589280631602038459.bed/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/5335333818235925973
/tmp/adamTestMvnFJdRuV3/5335333818235925973/sorted-variants.vcf
/tmp/adamTestMvnFJdRuV3/5335333818235925973/.sorted-variants.vcf.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2852361438575158315
/tmp/adamTestMvnFJdRuV3/TempSuite1308281619633233403
/tmp/adamTestMvnFJdRuV3/TempSuite7906466724929776506.adam
/tmp/adamTestMvnFJdRuV3/TempSuite7906466724929776506.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite7906466724929776506.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7906466724929776506.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7906466724929776506.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite7906466724929776506.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7906466724929776506.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7906466724929776506.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/TempSuite7906466724929776506.adam/.part-00000-f335935f-ac20-46e2-8fe5-9515bda1dc1e-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7906466724929776506.adam/_header
/tmp/adamTestMvnFJdRuV3/TempSuite7906466724929776506.adam/part-00000-f335935f-ac20-46e2-8fe5-9515bda1dc1e-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite4935148978010109044.bed
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite4935148978010109044.bed/_SUCCESS
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite4935148978010109044.bed/part-00001
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite4935148978010109044.bed/.part-00003.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite4935148978010109044.bed/part-00000
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite4935148978010109044.bed/part-00003
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite4935148978010109044.bed/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite4935148978010109044.bed/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite4935148978010109044.bed/part-00002
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite4935148978010109044.bed/.part-00002.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite4935148978010109044.bed/.part-00001.crc
/tmp/adamTestMvnFJdRuV3/8208047316038064385
/tmp/adamTestMvnFJdRuV3/8208047316038064385/predicate.1.adam
/tmp/adamTestMvnFJdRuV3/8208047316038064385/predicate.1.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/8208047316038064385/predicate.1.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/8208047316038064385/predicate.1.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/8208047316038064385/predicate.1.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/8208047316038064385/predicate.1.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/8208047316038064385/predicate.1.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/8208047316038064385/predicate.1.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/8208047316038064385/predicate.1.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/8208047316038064385/predicate.1.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/8208047316038064385/predicate.1.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/8208047316038064385/predicate.1.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/8208047316038064385/predicate.1.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/8208047316038064385/predicate.1.adam/_metadata
/tmp/adamTestMvnFJdRuV3/8208047316038064385/predicate.1.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/TempSuite901070796081771603.sam
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite995039887588099689.narrowPeak
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite995039887588099689.narrowPeak/_SUCCESS
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite995039887588099689.narrowPeak/part-00001
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite995039887588099689.narrowPeak/.part-00003.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite995039887588099689.narrowPeak/part-00000
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite995039887588099689.narrowPeak/part-00003
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite995039887588099689.narrowPeak/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite995039887588099689.narrowPeak/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite995039887588099689.narrowPeak/part-00002
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite995039887588099689.narrowPeak/.part-00002.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite995039887588099689.narrowPeak/.part-00001.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2249175496588140233.adam
/tmp/adamTestMvnFJdRuV3/TempSuite2249175496588140233.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite2249175496588140233.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2249175496588140233.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite2249175496588140233.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2249175496588140233.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite2249175496588140233.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/TempSuite2249175496588140233.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2249175496588140233.adam/_partitionMap.avro
/tmp/adamTestMvnFJdRuV3/TempSuite2249175496588140233.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite2249175496588140233.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2249175496588140233.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2249175496588140233.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite2249175496588140233.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2249175496588140233.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2249175496588140233.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite2249175496588140233.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2249175496588140233.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2249175496588140233.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2249175496588140233.adam/._partitionMap.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2249175496588140233.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite2249175496588140233.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite2249175496588140233.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/TempSuite770423997191342384.adam
/tmp/adamTestMvnFJdRuV3/TempSuite770423997191342384.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite770423997191342384.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite770423997191342384.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite770423997191342384.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite770423997191342384.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite770423997191342384.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite770423997191342384.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite770423997191342384.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite770423997191342384.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite770423997191342384.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite8196296290456981112_1.fq
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite7308615969378626031
/tmp/adamTestMvnFJdRuV3/TempSuite2544378673074135062.adam
/tmp/adamTestMvnFJdRuV3/TempSuite2544378673074135062.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite2544378673074135062.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2544378673074135062.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite2544378673074135062.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2544378673074135062.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite2544378673074135062.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2544378673074135062.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite2544378673074135062.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2544378673074135062.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2544378673074135062.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite2544378673074135062.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2544378673074135062.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite2544378673074135062.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2544378673074135062.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2544378673074135062.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite2544378673074135062.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnFJdRuV3/3991759077706513941
/tmp/adamTestMvnFJdRuV3/3991759077706513941/small.vcf.bgz
/tmp/adamTestMvnFJdRuV3/3991759077706513941/.small.vcf.bgz.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3948820198479876339
/tmp/adamTestMvnFJdRuV3/TempSuite1345915403626039125.adam
/tmp/adamTestMvnFJdRuV3/TempSuite1345915403626039125.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite1345915403626039125.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1345915403626039125.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite1345915403626039125.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1345915403626039125.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite1345915403626039125.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1345915403626039125.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite1345915403626039125.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1345915403626039125.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1345915403626039125.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1345915403626039125.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite1345915403626039125.adam/_header
/tmp/adamTestMvnFJdRuV3/TempSuite7873128911419729127.bed
/tmp/adamTestMvnFJdRuV3/TempSuite7873128911419729127.bed/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite7873128911419729127.bed/part-00000
/tmp/adamTestMvnFJdRuV3/TempSuite7873128911419729127.bed/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7873128911419729127.bed/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4948790604754998355
/tmp/adamTestMvnFJdRuV3/TempSuite344573865046242580.vcf
/tmp/adamTestMvnFJdRuV3/TempSuite344573865046242580.vcf/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite344573865046242580.vcf/part-r-00000
/tmp/adamTestMvnFJdRuV3/TempSuite344573865046242580.vcf/.part-r-00000.crc
/tmp/adamTestMvnFJdRuV3/TempSuite344573865046242580.vcf/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6277390214002863079
/tmp/adamTestMvnFJdRuV3/TempSuite6400560165425806568.fq
/tmp/adamTestMvnFJdRuV3/TempSuite6400560165425806568.fq/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite6400560165425806568.fq/part-00000
/tmp/adamTestMvnFJdRuV3/TempSuite6400560165425806568.fq/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6400560165425806568.fq/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8374998219805993971
/tmp/adamTestMvnFJdRuV3/TempSuite5252486144343946325.adam
/tmp/adamTestMvnFJdRuV3/TempSuite5252486144343946325.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite5252486144343946325.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5252486144343946325.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5252486144343946325.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite5252486144343946325.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5252486144343946325.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite5252486144343946325.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5252486144343946325.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite5252486144343946325.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5252486144343946325.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5252486144343946325.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5252486144343946325.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/TempSuite5252486144343946325.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite5252486144343946325.adam/_header
/tmp/adamTestMvnFJdRuV3/TempSuite624485234124241286.bed
/tmp/adamTestMvnFJdRuV3/TempSuite624485234124241286.bed/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite624485234124241286.bed/part-00000
/tmp/adamTestMvnFJdRuV3/TempSuite624485234124241286.bed/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/TempSuite624485234124241286.bed/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5246586710776604947.adam
/tmp/adamTestMvnFJdRuV3/TempSuite5246586710776604947.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite5246586710776604947.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5246586710776604947.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite5246586710776604947.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/TempSuite5246586710776604947.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5246586710776604947.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite5246586710776604947.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5246586710776604947.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5246586710776604947.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite5246586710776604947.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5246586710776604947.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5246586710776604947.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5246586710776604947.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite5246586710776604947.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/TempSuite8630020705351485089
/tmp/adamTestMvnFJdRuV3/2523129586494033464
/tmp/adamTestMvnFJdRuV3/2523129586494033464/bqsr1.vcf.bgz
/tmp/adamTestMvnFJdRuV3/2523129586494033464/bqsr1.vcf.bgz/_SUCCESS
/tmp/adamTestMvnFJdRuV3/2523129586494033464/bqsr1.vcf.bgz/part-r-00000.bgz
/tmp/adamTestMvnFJdRuV3/2523129586494033464/bqsr1.vcf.bgz/part-r-00003.bgz
/tmp/adamTestMvnFJdRuV3/2523129586494033464/bqsr1.vcf.bgz/.part-r-00001.bgz.crc
/tmp/adamTestMvnFJdRuV3/2523129586494033464/bqsr1.vcf.bgz/part-r-00001.bgz
/tmp/adamTestMvnFJdRuV3/2523129586494033464/bqsr1.vcf.bgz/.part-r-00003.bgz.crc
/tmp/adamTestMvnFJdRuV3/2523129586494033464/bqsr1.vcf.bgz/.part-r-00002.bgz.crc
/tmp/adamTestMvnFJdRuV3/2523129586494033464/bqsr1.vcf.bgz/part-r-00002.bgz
/tmp/adamTestMvnFJdRuV3/2523129586494033464/bqsr1.vcf.bgz/.part-r-00000.bgz.crc
/tmp/adamTestMvnFJdRuV3/2523129586494033464/bqsr1.vcf.bgz/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2953253229356657924.sam
/tmp/adamTestMvnFJdRuV3/TempSuite2953253229356657924.sam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite2953253229356657924.sam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2953253229356657924.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2953253229356657924.sam/part-r-00000.sam
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite530847827257945765.fasta
/tmp/adamTestMvnFJdRuV3/ordered.sam4187781046262805254.sam
/tmp/adamTestMvnFJdRuV3/1753388746241317218
/tmp/adamTestMvnFJdRuV3/1753388746241317218/ordered.sam
/tmp/adamTestMvnFJdRuV3/1753388746241317218/.ordered.sam.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3103869485407682944
/tmp/adamTestMvnFJdRuV3/TempSuite5482820732554199356
/tmp/adamTestMvnFJdRuV3/TempSuite4948790604754998355.adam
/tmp/adamTestMvnFJdRuV3/TempSuite4948790604754998355.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite4948790604754998355.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4948790604754998355.adam/.part-00002-11c62590-62b7-4d27-9270-339e85d9c7bd-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4948790604754998355.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4948790604754998355.adam/part-00002-11c62590-62b7-4d27-9270-339e85d9c7bd-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite4948790604754998355.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite4948790604754998355.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4948790604754998355.adam/part-00001-11c62590-62b7-4d27-9270-339e85d9c7bd-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite4948790604754998355.adam/.part-00000-11c62590-62b7-4d27-9270-339e85d9c7bd-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4948790604754998355.adam/part-00000-11c62590-62b7-4d27-9270-339e85d9c7bd-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite4948790604754998355.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4948790604754998355.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/TempSuite4948790604754998355.adam/.part-00001-11c62590-62b7-4d27-9270-339e85d9c7bd-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4948790604754998355.adam/_header
/tmp/adamTestMvnFJdRuV3/TempSuite603796451549920214
/tmp/adamTestMvnFJdRuV3/TempSuite1325167558862627455.adam
/tmp/adamTestMvnFJdRuV3/TempSuite1325167558862627455.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite1325167558862627455.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1325167558862627455.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1325167558862627455.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite1325167558862627455.adam/part-00002-d82a28a2-89a5-4bfe-bfe6-f70ca43d02b3-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite1325167558862627455.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1325167558862627455.adam/.part-00000-d82a28a2-89a5-4bfe-bfe6-f70ca43d02b3-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1325167558862627455.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1325167558862627455.adam/part-00001-d82a28a2-89a5-4bfe-bfe6-f70ca43d02b3-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite1325167558862627455.adam/.part-00002-d82a28a2-89a5-4bfe-bfe6-f70ca43d02b3-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1325167558862627455.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/TempSuite1325167558862627455.adam/part-00000-d82a28a2-89a5-4bfe-bfe6-f70ca43d02b3-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite1325167558862627455.adam/.part-00001-d82a28a2-89a5-4bfe-bfe6-f70ca43d02b3-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1325167558862627455.adam/_header
/tmp/adamTestMvnFJdRuV3/TempSuite7394810788066115655
/tmp/adamTestMvnFJdRuV3/TempSuite2803130161551763428.adam
/tmp/adamTestMvnFJdRuV3/TempSuite2803130161551763428.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite2803130161551763428.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2803130161551763428.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite2803130161551763428.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2803130161551763428.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite2803130161551763428.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2803130161551763428.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite2803130161551763428.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2803130161551763428.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2803130161551763428.adam/_metadata
/tmp/adamTestMvnFJdRuV3/1120726376610511323
/tmp/adamTestMvnFJdRuV3/1120726376610511323/unordered.sam
/tmp/adamTestMvnFJdRuV3/1120726376610511323/.unordered.sam.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6008326690731024174.adam
/tmp/adamTestMvnFJdRuV3/TempSuite6008326690731024174.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite6008326690731024174.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6008326690731024174.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6008326690731024174.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite6008326690731024174.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6008326690731024174.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite6008326690731024174.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6008326690731024174.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite6008326690731024174.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6008326690731024174.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6008326690731024174.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite6008326690731024174.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6008326690731024174.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite6008326690731024174.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6008326690731024174.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6008326690731024174.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/TempSuite6008326690731024174.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite6008326690731024174.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite6347040270946198445.bed
/tmp/adamTestMvnFJdRuV3/TempSuite6347040270946198445.bed/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite6347040270946198445.bed/part-00000
/tmp/adamTestMvnFJdRuV3/TempSuite6347040270946198445.bed/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6347040270946198445.bed/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite1191543741349949524
/tmp/adamTestMvnFJdRuV3/TempSuite6277390214002863079.bed
/tmp/adamTestMvnFJdRuV3/TempSuite6277390214002863079.bed/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite6277390214002863079.bed/part-00001
/tmp/adamTestMvnFJdRuV3/TempSuite6277390214002863079.bed/.part-00003.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6277390214002863079.bed/part-00000
/tmp/adamTestMvnFJdRuV3/TempSuite6277390214002863079.bed/part-00003
/tmp/adamTestMvnFJdRuV3/TempSuite6277390214002863079.bed/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6277390214002863079.bed/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6277390214002863079.bed/part-00002
/tmp/adamTestMvnFJdRuV3/TempSuite6277390214002863079.bed/.part-00002.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6277390214002863079.bed/.part-00001.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite282655735033106054
/tmp/adamTestMvnFJdRuV3/TempSuite7609910642873562760
/tmp/adamTestMvnFJdRuV3/TempSuite5993335469970442510.adam
/tmp/adamTestMvnFJdRuV3/TempSuite5993335469970442510.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite5993335469970442510.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5993335469970442510.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite5993335469970442510.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5993335469970442510.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite5993335469970442510.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5993335469970442510.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite5993335469970442510.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5993335469970442510.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5993335469970442510.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5993335469970442510.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite5993335469970442510.adam/_header
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite3293108480769442682
/tmp/adamTestMvnFJdRuV3/TempSuite5253625985623385202.fq
/tmp/adamTestMvnFJdRuV3/TempSuite5253625985623385202.fq/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite5253625985623385202.fq/part-00000
/tmp/adamTestMvnFJdRuV3/TempSuite5253625985623385202.fq/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5253625985623385202.fq/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7196873385777624356.adam
/tmp/adamTestMvnFJdRuV3/TempSuite7196873385777624356.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite7196873385777624356.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7196873385777624356.adam/referenceName=1
/tmp/adamTestMvnFJdRuV3/TempSuite7196873385777624356.adam/referenceName=1/positionBin=0
/tmp/adamTestMvnFJdRuV3/TempSuite7196873385777624356.adam/referenceName=1/positionBin=0/.part-00000-4134b2a0-fe79-4f5d-8368-61e11568b873.c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7196873385777624356.adam/referenceName=1/positionBin=0/part-00000-4134b2a0-fe79-4f5d-8368-61e11568b873.c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite7196873385777624356.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7196873385777624356.adam/referenceName=13
/tmp/adamTestMvnFJdRuV3/TempSuite7196873385777624356.adam/referenceName=13/positionBin=0
/tmp/adamTestMvnFJdRuV3/TempSuite7196873385777624356.adam/referenceName=13/positionBin=0/.part-00000-4134b2a0-fe79-4f5d-8368-61e11568b873.c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7196873385777624356.adam/referenceName=13/positionBin=0/part-00000-4134b2a0-fe79-4f5d-8368-61e11568b873.c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite7196873385777624356.adam/_partitionedByStartPos
/tmp/adamTestMvnFJdRuV3/TempSuite7196873385777624356.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite7196873385777624356.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7196873385777624356.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7196873385777624356.adam/._partitionedByStartPos.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7196873385777624356.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/TempSuite7196873385777624356.adam/referenceName=2
/tmp/adamTestMvnFJdRuV3/TempSuite7196873385777624356.adam/referenceName=2/positionBin=0
/tmp/adamTestMvnFJdRuV3/TempSuite7196873385777624356.adam/referenceName=2/positionBin=0/.part-00000-4134b2a0-fe79-4f5d-8368-61e11568b873.c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7196873385777624356.adam/referenceName=2/positionBin=0/part-00000-4134b2a0-fe79-4f5d-8368-61e11568b873.c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite7196873385777624356.adam/_header
/tmp/adamTestMvnFJdRuV3/TempSuite7500156458354561903
/tmp/adamTestMvnFJdRuV3/TempSuite3854511325179625625.fa
/tmp/adamTestMvnFJdRuV3/TempSuite3854511325179625625.fa/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite3854511325179625625.fa/part-00000
/tmp/adamTestMvnFJdRuV3/TempSuite3854511325179625625.fa/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3854511325179625625.fa/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7508869390771647509
/tmp/adamTestMvnFJdRuV3/ordered.sam4879937532262189970.sam
/tmp/adamTestMvnFJdRuV3/TempSuite3078011743775508468.adam
/tmp/adamTestMvnFJdRuV3/TempSuite3078011743775508468.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite3078011743775508468.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3078011743775508468.adam/part-00000-92fa6345-c22a-4512-9509-63fa46d96a6e-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite3078011743775508468.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite3078011743775508468.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3078011743775508468.adam/.part-00000-92fa6345-c22a-4512-9509-63fa46d96a6e-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3855294546423245878.adam
/tmp/adamTestMvnFJdRuV3/TempSuite3855294546423245878.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite3855294546423245878.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3855294546423245878.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite3855294546423245878.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/TempSuite3855294546423245878.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3855294546423245878.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite3855294546423245878.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3855294546423245878.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3855294546423245878.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite3855294546423245878.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3855294546423245878.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3855294546423245878.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3855294546423245878.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite3855294546423245878.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/TempSuite14085009300287244.adam
/tmp/adamTestMvnFJdRuV3/TempSuite14085009300287244.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite14085009300287244.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite14085009300287244.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite14085009300287244.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite14085009300287244.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite14085009300287244.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite14085009300287244.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite14085009300287244.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite14085009300287244.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite14085009300287244.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite7394810788066115655.adam
/tmp/adamTestMvnFJdRuV3/TempSuite7394810788066115655.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite7394810788066115655.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7394810788066115655.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite7394810788066115655.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/TempSuite7394810788066115655.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7394810788066115655.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite7394810788066115655.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7394810788066115655.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7394810788066115655.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite7394810788066115655.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7394810788066115655.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7394810788066115655.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7394810788066115655.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite7394810788066115655.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/TempSuite5659542326187121900
/tmp/adamTestMvnFJdRuV3/TempSuite6590394403163699204.adam
/tmp/adamTestMvnFJdRuV3/TempSuite6590394403163699204.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite6590394403163699204.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6590394403163699204.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite6590394403163699204.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/TempSuite6590394403163699204.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6590394403163699204.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite6590394403163699204.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6590394403163699204.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6590394403163699204.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite6590394403163699204.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6590394403163699204.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6590394403163699204.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6590394403163699204.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite6590394403163699204.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/TempSuite7986099818665755158
/tmp/adamTestMvnFJdRuV3/6972599921393685129
/tmp/adamTestMvnFJdRuV3/6972599921393685129/.gff3
/tmp/adamTestMvnFJdRuV3/6972599921393685129/..gff3.crc
/tmp/adamTestMvnFJdRuV3/4847242146742343651
/tmp/adamTestMvnFJdRuV3/4847242146742343651/.artificial.cram.crc
/tmp/adamTestMvnFJdRuV3/4847242146742343651/artificial.cram
/tmp/adamTestMvnFJdRuV3/TempSuite2157532560093609623
/tmp/adamTestMvnFJdRuV3/TempSuite7019795226152890274
/tmp/adamTestMvnFJdRuV3/TempSuite2249175496588140233
/tmp/adamTestMvnFJdRuV3/6740623555433345064
/tmp/adamTestMvnFJdRuV3/6740623555433345064/sorted.vcf
/tmp/adamTestMvnFJdRuV3/6740623555433345064/.sorted.vcf.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4217357186165896487_1.fq
/tmp/adamTestMvnFJdRuV3/TempSuite2938525388962933440_1.fq
/tmp/adamTestMvnFJdRuV3/TempSuite2938525388962933440_1.fq/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite2938525388962933440_1.fq/part-00000
/tmp/adamTestMvnFJdRuV3/TempSuite2938525388962933440_1.fq/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2938525388962933440_1.fq/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3155029623016110867.adam
/tmp/adamTestMvnFJdRuV3/TempSuite3155029623016110867.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite3155029623016110867.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3155029623016110867.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite3155029623016110867.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/TempSuite3155029623016110867.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3155029623016110867.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite3155029623016110867.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3155029623016110867.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3155029623016110867.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite3155029623016110867.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3155029623016110867.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3155029623016110867.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3155029623016110867.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite3155029623016110867.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/921918745496314963
/tmp/adamTestMvnFJdRuV3/921918745496314963/variants.adam
/tmp/adamTestMvnFJdRuV3/921918745496314963/variants.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/921918745496314963/variants.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/921918745496314963/variants.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/921918745496314963/variants.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/921918745496314963/variants.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/921918745496314963/variants.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/921918745496314963/variants.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/921918745496314963/variants.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/921918745496314963/variants.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/921918745496314963/variants.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/921918745496314963/variants.adam/_metadata
/tmp/adamTestMvnFJdRuV3/921918745496314963/variants.adam/_header
/tmp/adamTestMvnFJdRuV3/TempSuite360558634422308641.bed
/tmp/adamTestMvnFJdRuV3/TempSuite360558634422308641.bed/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite360558634422308641.bed/part-00001
/tmp/adamTestMvnFJdRuV3/TempSuite360558634422308641.bed/.part-00003.crc
/tmp/adamTestMvnFJdRuV3/TempSuite360558634422308641.bed/part-00000
/tmp/adamTestMvnFJdRuV3/TempSuite360558634422308641.bed/part-00003
/tmp/adamTestMvnFJdRuV3/TempSuite360558634422308641.bed/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/TempSuite360558634422308641.bed/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite360558634422308641.bed/part-00002
/tmp/adamTestMvnFJdRuV3/TempSuite360558634422308641.bed/.part-00002.crc
/tmp/adamTestMvnFJdRuV3/TempSuite360558634422308641.bed/.part-00001.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2060758506450233585
/tmp/adamTestMvnFJdRuV3/1599677757412-0
/tmp/adamTestMvnFJdRuV3/1599677757412-0/.test_single.vcf.crc
/tmp/adamTestMvnFJdRuV3/1599677757412-0/test.vcf
/tmp/adamTestMvnFJdRuV3/1599677757412-0/test.vcf/_SUCCESS
/tmp/adamTestMvnFJdRuV3/1599677757412-0/test.vcf/part-r-00000
/tmp/adamTestMvnFJdRuV3/1599677757412-0/test.vcf/.part-r-00000.crc
/tmp/adamTestMvnFJdRuV3/1599677757412-0/test.vcf/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/1599677757412-0/test_single.vcf
/tmp/adamTestMvnFJdRuV3/artificial.cram8772972035658204925.cram
/tmp/adamTestMvnFJdRuV3/TempSuite3568996002112158908.adam
/tmp/adamTestMvnFJdRuV3/TempSuite3568996002112158908.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite3568996002112158908.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3568996002112158908.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite3568996002112158908.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/TempSuite3568996002112158908.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3568996002112158908.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite3568996002112158908.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3568996002112158908.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3568996002112158908.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite3568996002112158908.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3568996002112158908.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3568996002112158908.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3568996002112158908.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite3568996002112158908.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/.ReadDatasetSuite7142948769130131826.fastq.crc
/tmp/adamTestMvnFJdRuV3/TempSuite9208902869192641313.adam
/tmp/adamTestMvnFJdRuV3/TempSuite9208902869192641313.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite9208902869192641313.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite9208902869192641313.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite9208902869192641313.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite9208902869192641313.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite9208902869192641313.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite9208902869192641313.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite9208902869192641313.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite9208902869192641313.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite9208902869192641313.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite9208902869192641313.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite9208902869192641313.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/TempSuite9208902869192641313.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite9208902869192641313.adam/_header
/tmp/adamTestMvnFJdRuV3/random.vcf7207460396535432799.vcf
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite8147723213460615746.bed
/tmp/adamTestMvnFJdRuV3/TempSuite2986544090710293032.adam
/tmp/adamTestMvnFJdRuV3/TempSuite2986544090710293032.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite2986544090710293032.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2986544090710293032.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2986544090710293032.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite2986544090710293032.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2986544090710293032.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite2986544090710293032.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2986544090710293032.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite2986544090710293032.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2986544090710293032.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2986544090710293032.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2986544090710293032.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/TempSuite2986544090710293032.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite2986544090710293032.adam/_header
/tmp/adamTestMvnFJdRuV3/TempSuite1754064590151958682
/tmp/adamTestMvnFJdRuV3/4857332453528041742
/tmp/adamTestMvnFJdRuV3/4857332453528041742/variants.lex.adam
/tmp/adamTestMvnFJdRuV3/4857332453528041742/variants.lex.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/4857332453528041742/variants.lex.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/4857332453528041742/variants.lex.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/4857332453528041742/variants.lex.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/4857332453528041742/variants.lex.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/4857332453528041742/variants.lex.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/4857332453528041742/variants.lex.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/4857332453528041742/variants.lex.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/4857332453528041742/variants.lex.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/4857332453528041742/variants.lex.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/4857332453528041742/variants.lex.adam/_metadata
/tmp/adamTestMvnFJdRuV3/4857332453528041742/variants.lex.adam/_header
/tmp/adamTestMvnFJdRuV3/TempSuite3487442720622559608
/tmp/adamTestMvnFJdRuV3/TempSuite578679262854018338
/tmp/adamTestMvnFJdRuV3/TempSuite6943229720393802694
/tmp/adamTestMvnFJdRuV3/TempSuite7579078304277702063.bam
/tmp/adamTestMvnFJdRuV3/gencode.v7.annotation.trunc10.bed8207539158499760364.v7.annotation.trunc10.bed
/tmp/adamTestMvnFJdRuV3/TempSuite5154415206283400108
/tmp/adamTestMvnFJdRuV3/TempSuite7037862231790065000
/tmp/adamTestMvnFJdRuV3/random.vcf4954101517817777507.vcf
/tmp/adamTestMvnFJdRuV3/TempSuite2357740183562773106
/tmp/adamTestMvnFJdRuV3/TempSuite8640953464408630661.adam
/tmp/adamTestMvnFJdRuV3/TempSuite8640953464408630661.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite8640953464408630661.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8640953464408630661.adam/part-00000-9a8ec2c3-6950-48de-b851-bf8ae6d4c331-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite8640953464408630661.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite8640953464408630661.adam/.part-00000-9a8ec2c3-6950-48de-b851-bf8ae6d4c331-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8640953464408630661.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5942032975207451643.sam
/tmp/adamTestMvnFJdRuV3/TempSuite5942032975207451643.sam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite5942032975207451643.sam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5942032975207451643.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5942032975207451643.sam/part-r-00000.sam
/tmp/adamTestMvnFJdRuV3/4272321868292003519
/tmp/adamTestMvnFJdRuV3/4272321868292003519/genotypes.nested-annotations.adam
/tmp/adamTestMvnFJdRuV3/4272321868292003519/genotypes.nested-annotations.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/4272321868292003519/genotypes.nested-annotations.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/4272321868292003519/genotypes.nested-annotations.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/4272321868292003519/genotypes.nested-annotations.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/4272321868292003519/genotypes.nested-annotations.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/4272321868292003519/genotypes.nested-annotations.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/4272321868292003519/genotypes.nested-annotations.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/4272321868292003519/genotypes.nested-annotations.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/4272321868292003519/genotypes.nested-annotations.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/4272321868292003519/genotypes.nested-annotations.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/4272321868292003519/genotypes.nested-annotations.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/4272321868292003519/genotypes.nested-annotations.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/4272321868292003519/genotypes.nested-annotations.adam/_metadata
/tmp/adamTestMvnFJdRuV3/4272321868292003519/genotypes.nested-annotations.adam/_header
/tmp/adamTestMvnFJdRuV3/TempSuite1666333328087491789
/tmp/adamTestMvnFJdRuV3/TempSuite1668150701835889275.adam
/tmp/adamTestMvnFJdRuV3/TempSuite1668150701835889275.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite1668150701835889275.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1668150701835889275.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite1668150701835889275.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/TempSuite1668150701835889275.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1668150701835889275.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite1668150701835889275.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1668150701835889275.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1668150701835889275.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite1668150701835889275.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1668150701835889275.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1668150701835889275.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1668150701835889275.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite1668150701835889275.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/TempSuite2944198792304377806
/tmp/adamTestMvnFJdRuV3/7528293169408590442
/tmp/adamTestMvnFJdRuV3/7528293169408590442/unordered.sam
/tmp/adamTestMvnFJdRuV3/7528293169408590442/.unordered.sam.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3523747791826777137.interval_list
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3523747791826777137.interval_list/_SUCCESS
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3523747791826777137.interval_list/part-00001
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3523747791826777137.interval_list/.part-00003.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3523747791826777137.interval_list/part-00000
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3523747791826777137.interval_list/part-00003
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3523747791826777137.interval_list/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3523747791826777137.interval_list/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3523747791826777137.interval_list/part-00002
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3523747791826777137.interval_list/.part-00002.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3523747791826777137.interval_list/.part-00001.crc
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite530847827257945765
/tmp/adamTestMvnFJdRuV3/TempSuite7108467799281501241
/tmp/adamTestMvnFJdRuV3/4622190794187573159
/tmp/adamTestMvnFJdRuV3/4622190794187573159/unordered.adam
/tmp/adamTestMvnFJdRuV3/4622190794187573159/unordered.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/4622190794187573159/unordered.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/4622190794187573159/unordered.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/4622190794187573159/unordered.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/4622190794187573159/unordered.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/4622190794187573159/unordered.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/4622190794187573159/unordered.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/4622190794187573159/unordered.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/4622190794187573159/unordered.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/4622190794187573159/unordered.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/4622190794187573159/unordered.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/4622190794187573159/unordered.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/4622190794187573159/unordered.adam/_metadata
/tmp/adamTestMvnFJdRuV3/4622190794187573159/unordered.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/TempSuite6517950168564108055
/tmp/adamTestMvnFJdRuV3/TempSuite238192726399574486.2.adam
/tmp/adamTestMvnFJdRuV3/TempSuite238192726399574486.2.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite238192726399574486.2.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite238192726399574486.2.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite238192726399574486.2.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/TempSuite238192726399574486.2.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite238192726399574486.2.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite238192726399574486.2.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite238192726399574486.2.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite238192726399574486.2.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite238192726399574486.2.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite238192726399574486.2.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite238192726399574486.2.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite238192726399574486.2.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite238192726399574486.2.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/TempSuite4217357186165896487
/tmp/adamTestMvnFJdRuV3/TempSuite6466721679832586963.adam
/tmp/adamTestMvnFJdRuV3/TempSuite6466721679832586963.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite6466721679832586963.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6466721679832586963.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite6466721679832586963.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/TempSuite6466721679832586963.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6466721679832586963.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite6466721679832586963.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6466721679832586963.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6466721679832586963.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite6466721679832586963.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6466721679832586963.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6466721679832586963.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6466721679832586963.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite6466721679832586963.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/440619043189520629
/tmp/adamTestMvnFJdRuV3/440619043189520629/bqsr1.vcf.bgz
/tmp/adamTestMvnFJdRuV3/440619043189520629/bqsr1.vcf.bgz/_SUCCESS
/tmp/adamTestMvnFJdRuV3/440619043189520629/bqsr1.vcf.bgz/part-r-00000.bgz
/tmp/adamTestMvnFJdRuV3/440619043189520629/bqsr1.vcf.bgz/part-r-00003.bgz
/tmp/adamTestMvnFJdRuV3/440619043189520629/bqsr1.vcf.bgz/.part-r-00001.bgz.crc
/tmp/adamTestMvnFJdRuV3/440619043189520629/bqsr1.vcf.bgz/part-r-00001.bgz
/tmp/adamTestMvnFJdRuV3/440619043189520629/bqsr1.vcf.bgz/.part-r-00003.bgz.crc
/tmp/adamTestMvnFJdRuV3/440619043189520629/bqsr1.vcf.bgz/.part-r-00002.bgz.crc
/tmp/adamTestMvnFJdRuV3/440619043189520629/bqsr1.vcf.bgz/part-r-00002.bgz
/tmp/adamTestMvnFJdRuV3/440619043189520629/bqsr1.vcf.bgz/.part-r-00000.bgz.crc
/tmp/adamTestMvnFJdRuV3/440619043189520629/bqsr1.vcf.bgz/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/8213275837611911765
/tmp/adamTestMvnFJdRuV3/8213275837611911765/binned.adam
/tmp/adamTestMvnFJdRuV3/8213275837611911765/binned.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/8213275837611911765/binned.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/8213275837611911765/binned.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/8213275837611911765/binned.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/8213275837611911765/binned.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/8213275837611911765/binned.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/8213275837611911765/binned.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/8213275837611911765/binned.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/8213275837611911765/binned.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/8213275837611911765/binned.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/8213275837611911765/binned.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/8213275837611911765/binned.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/8213275837611911765/binned.adam/_metadata
/tmp/adamTestMvnFJdRuV3/8213275837611911765/binned.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/gencode.v7.annotation.trunc10.bed5258434509162581828.v7.annotation.trunc10.bed
/tmp/adamTestMvnFJdRuV3/TempSuite2708930949043491715.adam
/tmp/adamTestMvnFJdRuV3/TempSuite2708930949043491715.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite2708930949043491715.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2708930949043491715.adam/.part-00000-bc4d1ea2-2202-479f-9453-6713b3e50f0f-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2708930949043491715.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite2708930949043491715.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2708930949043491715.adam/part-00000-bc4d1ea2-2202-479f-9453-6713b3e50f0f-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite2708930949043491715.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2708930949043491715.adam/_header
/tmp/adamTestMvnFJdRuV3/TempSuite2125905361635884164.adam
/tmp/adamTestMvnFJdRuV3/TempSuite2125905361635884164.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite2125905361635884164.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2125905361635884164.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/TempSuite2125905361635884164.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite2125905361635884164.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2125905361635884164.adam/part-00000-6498268f-830a-4f76-8012-f1c2599ff92d-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite2125905361635884164.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2125905361635884164.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2125905361635884164.adam/.part-00000-6498268f-830a-4f76-8012-f1c2599ff92d-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2125905361635884164.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/TempSuite6106529514318311510
/tmp/adamTestMvnFJdRuV3/TempSuite7084681501801378003
/tmp/adamTestMvnFJdRuV3/3307356296315834924
/tmp/adamTestMvnFJdRuV3/3307356296315834924/variants.lex.adam
/tmp/adamTestMvnFJdRuV3/3307356296315834924/variants.lex.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/3307356296315834924/variants.lex.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/3307356296315834924/variants.lex.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/3307356296315834924/variants.lex.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/3307356296315834924/variants.lex.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/3307356296315834924/variants.lex.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/3307356296315834924/variants.lex.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/3307356296315834924/variants.lex.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/3307356296315834924/variants.lex.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/3307356296315834924/variants.lex.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/3307356296315834924/variants.lex.adam/_metadata
/tmp/adamTestMvnFJdRuV3/3307356296315834924/variants.lex.adam/_header
/tmp/adamTestMvnFJdRuV3/TempSuite5155965424808203944.bed
/tmp/adamTestMvnFJdRuV3/TempSuite5155965424808203944.bed/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite5155965424808203944.bed/part-00001
/tmp/adamTestMvnFJdRuV3/TempSuite5155965424808203944.bed/.part-00003.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5155965424808203944.bed/part-00000
/tmp/adamTestMvnFJdRuV3/TempSuite5155965424808203944.bed/part-00003
/tmp/adamTestMvnFJdRuV3/TempSuite5155965424808203944.bed/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5155965424808203944.bed/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5155965424808203944.bed/part-00002
/tmp/adamTestMvnFJdRuV3/TempSuite5155965424808203944.bed/.part-00002.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5155965424808203944.bed/.part-00001.crc
/tmp/adamTestMvnFJdRuV3/TempSuite894095149894594875
/tmp/adamTestMvnFJdRuV3/bqsr17164780757588995959
/tmp/adamTestMvnFJdRuV3/bqsr17164780757588995959/.bqsr1.sam.crc
/tmp/adamTestMvnFJdRuV3/bqsr17164780757588995959/bqsr1.sam
/tmp/adamTestMvnFJdRuV3/3981591036514892756
/tmp/adamTestMvnFJdRuV3/3981591036514892756/readname_sorted.sam
/tmp/adamTestMvnFJdRuV3/3981591036514892756/.readname_sorted.sam.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2446116224597083357
/tmp/adamTestMvnFJdRuV3/TempSuite1772717051773129585.adam
/tmp/adamTestMvnFJdRuV3/TempSuite1772717051773129585.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite1772717051773129585.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1772717051773129585.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1772717051773129585.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite1772717051773129585.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1772717051773129585.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite1772717051773129585.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1772717051773129585.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite1772717051773129585.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1772717051773129585.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1772717051773129585.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite1772717051773129585.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1772717051773129585.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite1772717051773129585.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1772717051773129585.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1772717051773129585.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1772717051773129585.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/TempSuite1772717051773129585.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite1772717051773129585.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite1772717051773129585.adam/_header
/tmp/adamTestMvnFJdRuV3/TempSuite2188275685702974268.adam
/tmp/adamTestMvnFJdRuV3/TempSuite2188275685702974268.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite2188275685702974268.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2188275685702974268.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite2188275685702974268.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2188275685702974268.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite2188275685702974268.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/TempSuite2188275685702974268.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2188275685702974268.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite2188275685702974268.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2188275685702974268.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2188275685702974268.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite2188275685702974268.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2188275685702974268.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2188275685702974268.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite2188275685702974268.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2188275685702974268.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2188275685702974268.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2188275685702974268.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite2188275685702974268.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite2188275685702974268.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite8101626578491505247
/tmp/adamTestMvnFJdRuV3/TempSuite1666333328087491789.sam
/tmp/adamTestMvnFJdRuV3/TempSuite1666333328087491789.sam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite1666333328087491789.sam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1666333328087491789.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1666333328087491789.sam/part-r-00000.sam
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite8732260955763195261.gtf
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite8732260955763195261.gtf/_SUCCESS
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite8732260955763195261.gtf/part-00001
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite8732260955763195261.gtf/.part-00003.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite8732260955763195261.gtf/part-00000
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite8732260955763195261.gtf/part-00003
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite8732260955763195261.gtf/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite8732260955763195261.gtf/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite8732260955763195261.gtf/part-00002
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite8732260955763195261.gtf/.part-00002.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite8732260955763195261.gtf/.part-00001.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2823015617056954675
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3441527704067752232.interval_list
/tmp/adamTestMvnFJdRuV3/TempSuite5460384418370997242.adam
/tmp/adamTestMvnFJdRuV3/TempSuite5460384418370997242.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite5460384418370997242.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5460384418370997242.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite5460384418370997242.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/TempSuite5460384418370997242.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5460384418370997242.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite5460384418370997242.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5460384418370997242.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5460384418370997242.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite5460384418370997242.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5460384418370997242.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5460384418370997242.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5460384418370997242.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite5460384418370997242.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/TempSuite1449962028709645224
/tmp/adamTestMvnFJdRuV3/TempSuite8815654380947752624.adam
/tmp/adamTestMvnFJdRuV3/TempSuite8815654380947752624.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite8815654380947752624.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8815654380947752624.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite8815654380947752624.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/TempSuite8815654380947752624.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8815654380947752624.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite8815654380947752624.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8815654380947752624.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8815654380947752624.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite8815654380947752624.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8815654380947752624.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8815654380947752624.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8815654380947752624.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite8815654380947752624.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/TempSuite5649583735704960004
/tmp/adamTestMvnFJdRuV3/sorted-variants.lex.vcf3228178602054889235.lex.vcf
/tmp/adamTestMvnFJdRuV3/TempSuite3948820198479876339_2.fq
/tmp/adamTestMvnFJdRuV3/TempSuite3948820198479876339_2.fq/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite3948820198479876339_2.fq/part-00000
/tmp/adamTestMvnFJdRuV3/TempSuite3948820198479876339_2.fq/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3948820198479876339_2.fq/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8170225613614646374
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite995039887588099689
/tmp/adamTestMvnFJdRuV3/TempSuite8149265746025690973
/tmp/adamTestMvnFJdRuV3/TempSuite5246586710776604947
/tmp/adamTestMvnFJdRuV3/TempSuite1247701737506617862.bam
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite2889964889729171619.gtf
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite2889964889729171619.gtf/_SUCCESS
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite2889964889729171619.gtf/part-00001
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite2889964889729171619.gtf/.part-00003.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite2889964889729171619.gtf/part-00000
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite2889964889729171619.gtf/part-00003
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite2889964889729171619.gtf/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite2889964889729171619.gtf/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite2889964889729171619.gtf/part-00002
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite2889964889729171619.gtf/.part-00002.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite2889964889729171619.gtf/.part-00001.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8233925073059069084.adam
/tmp/adamTestMvnFJdRuV3/TempSuite8233925073059069084.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite8233925073059069084.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8233925073059069084.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8233925073059069084.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite8233925073059069084.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8233925073059069084.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite8233925073059069084.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8233925073059069084.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite8233925073059069084.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8233925073059069084.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8233925073059069084.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite8233925073059069084.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8233925073059069084.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite8233925073059069084.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8233925073059069084.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8233925073059069084.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8233925073059069084.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/TempSuite8233925073059069084.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite8233925073059069084.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite8233925073059069084.adam/_header
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite7472263847628829234
/tmp/adamTestMvnFJdRuV3/TempSuite6013259784327954131
/tmp/adamTestMvnFJdRuV3/TempSuite235808962339495431.adam
/tmp/adamTestMvnFJdRuV3/TempSuite235808962339495431.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite235808962339495431.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite235808962339495431.adam/.part-00002-5ac3afd8-83f7-4c76-805f-3d389edaba0a-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite235808962339495431.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/TempSuite235808962339495431.adam/part-00001-5ac3afd8-83f7-4c76-805f-3d389edaba0a-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite235808962339495431.adam/.part-00001-5ac3afd8-83f7-4c76-805f-3d389edaba0a-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite235808962339495431.adam/.part-00000-5ac3afd8-83f7-4c76-805f-3d389edaba0a-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite235808962339495431.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite235808962339495431.adam/part-00000-5ac3afd8-83f7-4c76-805f-3d389edaba0a-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite235808962339495431.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite235808962339495431.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite235808962339495431.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite235808962339495431.adam/part-00002-5ac3afd8-83f7-4c76-805f-3d389edaba0a-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite235808962339495431.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3955885815041069615.interval_list
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3955885815041069615.interval_list/_SUCCESS
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3955885815041069615.interval_list/part-00001
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3955885815041069615.interval_list/.part-00003.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3955885815041069615.interval_list/part-00000
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3955885815041069615.interval_list/part-00003
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3955885815041069615.interval_list/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3955885815041069615.interval_list/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3955885815041069615.interval_list/part-00002
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3955885815041069615.interval_list/.part-00002.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3955885815041069615.interval_list/.part-00001.crc
/tmp/adamTestMvnFJdRuV3/small.sam3275630730403457359.sam
/tmp/adamTestMvnFJdRuV3/TempSuite83554216350175608.adam
/tmp/adamTestMvnFJdRuV3/TempSuite83554216350175608.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite83554216350175608.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite83554216350175608.adam/.part-00002-9af7532a-8197-4f18-972e-9012edca59a0-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite83554216350175608.adam/part-00001-9af7532a-8197-4f18-972e-9012edca59a0-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite83554216350175608.adam/part-00002-9af7532a-8197-4f18-972e-9012edca59a0-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite83554216350175608.adam/.part-00001-9af7532a-8197-4f18-972e-9012edca59a0-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite83554216350175608.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite83554216350175608.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite83554216350175608.adam/.part-00000-9af7532a-8197-4f18-972e-9012edca59a0-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite83554216350175608.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite83554216350175608.adam/part-00000-9af7532a-8197-4f18-972e-9012edca59a0-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite83554216350175608.adam/_header
/tmp/adamTestMvnFJdRuV3/TempSuite8604443819303596036.adam
/tmp/adamTestMvnFJdRuV3/TempSuite8604443819303596036.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite8604443819303596036.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8604443819303596036.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite8604443819303596036.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/TempSuite8604443819303596036.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8604443819303596036.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite8604443819303596036.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8604443819303596036.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8604443819303596036.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite8604443819303596036.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8604443819303596036.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8604443819303596036.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8604443819303596036.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite8604443819303596036.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/TempSuite3246154496268316559
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite1903699193579862888
/tmp/adamTestMvnFJdRuV3/TempSuite2485744506455801690
/tmp/adamTestMvnFJdRuV3/TempSuite2155062374785806970
/tmp/adamTestMvnFJdRuV3/TempSuite2948002649884429379.adam
/tmp/adamTestMvnFJdRuV3/TempSuite2948002649884429379.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite2948002649884429379.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2948002649884429379.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite2948002649884429379.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2948002649884429379.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite2948002649884429379.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2948002649884429379.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite2948002649884429379.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2948002649884429379.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2948002649884429379.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2948002649884429379.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite2948002649884429379.adam/_header
/tmp/adamTestMvnFJdRuV3/javaAC9017558911046936227
/tmp/adamTestMvnFJdRuV3/javaAC9017558911046936227/testRdd.coverage.adam
/tmp/adamTestMvnFJdRuV3/javaAC9017558911046936227/testRdd.coverage.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/javaAC9017558911046936227/testRdd.coverage.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/javaAC9017558911046936227/testRdd.coverage.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/javaAC9017558911046936227/testRdd.coverage.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/javaAC9017558911046936227/testRdd.coverage.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/javaAC9017558911046936227/testRdd.coverage.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnFJdRuV3/javaAC9017558911046936227/testRdd.coverage.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/javaAC9017558911046936227/testRdd.coverage.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/javaAC9017558911046936227/testRdd.coverage.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/javaAC9017558911046936227/testRdd.coverage.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/javaAC9017558911046936227/testRdd.coverage.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnFJdRuV3/javaAC9017558911046936227/testRdd.coverage.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/javaAC9017558911046936227/testRdd.coverage.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/javaAC9017558911046936227/testRdd.coverage.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/javaAC9017558911046936227/testRdd.coverage.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/javaAC9017558911046936227/testRdd.coverage.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/javaAC9017558911046936227/testRdd.coverage.adam/_metadata
/tmp/adamTestMvnFJdRuV3/javaAC9017558911046936227/testRdd.coverage.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite946853599860300938.adam
/tmp/adamTestMvnFJdRuV3/TempSuite946853599860300938.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite946853599860300938.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite946853599860300938.adam/.part-00000-ab3c6035-99c7-4928-a459-85f5ffbc5f7d-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite946853599860300938.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite946853599860300938.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite946853599860300938.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite946853599860300938.adam/part-00000-ab3c6035-99c7-4928-a459-85f5ffbc5f7d-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite946853599860300938.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite946853599860300938.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/TempSuite946853599860300938.adam/_header
/tmp/adamTestMvnFJdRuV3/TempSuite235808962339495431
/tmp/adamTestMvnFJdRuV3/TempSuite6031418639943034799
/tmp/adamTestMvnFJdRuV3/TempSuite2544378673074135062
/tmp/adamTestMvnFJdRuV3/.FeatureDatasetFunctionsSuite1537841012162825.gtf.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3076511942003619985.bam
/tmp/adamTestMvnFJdRuV3/TempSuite3076511942003619985.bam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite3076511942003619985.bam/part-r-00000.bam
/tmp/adamTestMvnFJdRuV3/TempSuite3076511942003619985.bam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3076511942003619985.bam/.part-r-00000.bam.crc
/tmp/adamTestMvnFJdRuV3/reads12601308075506969742
/tmp/adamTestMvnFJdRuV3/reads12601308075506969742/reads12.sam
/tmp/adamTestMvnFJdRuV3/reads12601308075506969742/reads12.sam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/reads12601308075506969742/reads12.sam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/reads12601308075506969742/reads12.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnFJdRuV3/reads12601308075506969742/reads12.sam/part-r-00000.sam
/tmp/adamTestMvnFJdRuV3/TempSuite1469310106654178994.bed
/tmp/adamTestMvnFJdRuV3/TempSuite1469310106654178994.bed/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite1469310106654178994.bed/part-00001
/tmp/adamTestMvnFJdRuV3/TempSuite1469310106654178994.bed/.part-00003.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1469310106654178994.bed/part-00000
/tmp/adamTestMvnFJdRuV3/TempSuite1469310106654178994.bed/part-00003
/tmp/adamTestMvnFJdRuV3/TempSuite1469310106654178994.bed/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1469310106654178994.bed/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1469310106654178994.bed/part-00002
/tmp/adamTestMvnFJdRuV3/TempSuite1469310106654178994.bed/.part-00002.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1469310106654178994.bed/.part-00001.crc
/tmp/adamTestMvnFJdRuV3/TempSuite935820219253541262
/tmp/adamTestMvnFJdRuV3/TempSuite3124534263994594838
/tmp/adamTestMvnFJdRuV3/TempSuite5883486718160203687.adam
/tmp/adamTestMvnFJdRuV3/TempSuite5883486718160203687.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite5883486718160203687.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5883486718160203687.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite5883486718160203687.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5883486718160203687.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite5883486718160203687.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5883486718160203687.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite5883486718160203687.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5883486718160203687.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5883486718160203687.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5883486718160203687.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite5883486718160203687.adam/_header
/tmp/adamTestMvnFJdRuV3/195253053438827554
/tmp/adamTestMvnFJdRuV3/195253053438827554/.sorted.lex.vcf.crc
/tmp/adamTestMvnFJdRuV3/195253053438827554/sorted.lex.vcf
/tmp/adamTestMvnFJdRuV3/TempSuite7254905270748521182.adam
/tmp/adamTestMvnFJdRuV3/TempSuite7254905270748521182.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite7254905270748521182.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7254905270748521182.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7254905270748521182.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite7254905270748521182.adam/part-00000-bb52b44e-bd05-4b95-9e04-06ea543a246d-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite7254905270748521182.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7254905270748521182.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7254905270748521182.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/TempSuite7254905270748521182.adam/_header
/tmp/adamTestMvnFJdRuV3/TempSuite7254905270748521182.adam/.part-00000-bb52b44e-bd05-4b95-9e04-06ea543a246d-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2472223376235822086.adam
/tmp/adamTestMvnFJdRuV3/TempSuite2472223376235822086.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite2472223376235822086.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2472223376235822086.adam/part-00000-5864106c-661f-45f4-a761-b39e9027e238-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite2472223376235822086.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite2472223376235822086.adam/.part-00000-5864106c-661f-45f4-a761-b39e9027e238-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2472223376235822086.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2472223376235822086.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2472223376235822086.adam/_header
/tmp/adamTestMvnFJdRuV3/TempSuite5155965424808203944
/tmp/adamTestMvnFJdRuV3/TempSuite8050997081596332864.adam
/tmp/adamTestMvnFJdRuV3/TempSuite8050997081596332864.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite8050997081596332864.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8050997081596332864.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8050997081596332864.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite8050997081596332864.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8050997081596332864.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite8050997081596332864.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8050997081596332864.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite8050997081596332864.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8050997081596332864.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8050997081596332864.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/TempSuite8050997081596332864.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite8116052284808651830
/tmp/adamTestMvnFJdRuV3/TempSuite935820219253541262.fq
/tmp/adamTestMvnFJdRuV3/TempSuite3453665660047231784.adam
/tmp/adamTestMvnFJdRuV3/TempSuite3453665660047231784.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite3453665660047231784.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3453665660047231784.adam/.part-00001-7a4e6ad2-3329-4b14-9bce-fd4d72678e00-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3453665660047231784.adam/.part-00002-7a4e6ad2-3329-4b14-9bce-fd4d72678e00-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3453665660047231784.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite3453665660047231784.adam/part-00001-7a4e6ad2-3329-4b14-9bce-fd4d72678e00-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite3453665660047231784.adam/part-00000-7a4e6ad2-3329-4b14-9bce-fd4d72678e00-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite3453665660047231784.adam/part-00002-7a4e6ad2-3329-4b14-9bce-fd4d72678e00-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite3453665660047231784.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3453665660047231784.adam/.part-00000-7a4e6ad2-3329-4b14-9bce-fd4d72678e00-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/random.vcf5567036917253215543.vcf
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite2452796640442294561.adam
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite2452796640442294561.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite2452796640442294561.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite2452796640442294561.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite2452796640442294561.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite2452796640442294561.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite2452796640442294561.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite2452796640442294561.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite2452796640442294561.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite2452796640442294561.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite2452796640442294561.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite2452796640442294561.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite2452796640442294561.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite2452796640442294561.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite2452796640442294561.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite2452796640442294561.adam/_metadata
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite2452796640442294561.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite6806100472807492189.fastq
/tmp/adamTestMvnFJdRuV3/TempSuite3817783677841565306.adam
/tmp/adamTestMvnFJdRuV3/TempSuite3817783677841565306.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite3817783677841565306.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3817783677841565306.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite3817783677841565306.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/TempSuite3817783677841565306.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3817783677841565306.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite3817783677841565306.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3817783677841565306.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3817783677841565306.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite3817783677841565306.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3817783677841565306.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3817783677841565306.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3817783677841565306.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite3817783677841565306.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/TempSuite3361687401724354903.adam
/tmp/adamTestMvnFJdRuV3/TempSuite3361687401724354903.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite3361687401724354903.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3361687401724354903.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite3361687401724354903.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3361687401724354903.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite3361687401724354903.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3361687401724354903.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite3361687401724354903.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3361687401724354903.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3361687401724354903.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3361687401724354903.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite3361687401724354903.adam/_header
/tmp/adamTestMvnFJdRuV3/TempSuite3568996002112158908
/tmp/adamTestMvnFJdRuV3/.FeatureDatasetFunctionsSuite1927141407573315022.bed.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2818210951047239516
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite2736306264435113252.adam
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite2736306264435113252.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite2736306264435113252.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite2736306264435113252.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite2736306264435113252.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite2736306264435113252.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite2736306264435113252.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite2736306264435113252.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite2736306264435113252.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite2736306264435113252.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite2736306264435113252.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite2736306264435113252.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite2736306264435113252.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite2736306264435113252.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite2736306264435113252.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite2736306264435113252.adam/_metadata
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite2736306264435113252.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite8755096023719145791.adam
/tmp/adamTestMvnFJdRuV3/TempSuite8755096023719145791.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite8755096023719145791.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8755096023719145791.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8755096023719145791.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite8755096023719145791.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8755096023719145791.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite8755096023719145791.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8755096023719145791.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite8755096023719145791.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8755096023719145791.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8755096023719145791.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite8755096023719145791.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8755096023719145791.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite8755096023719145791.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8755096023719145791.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8755096023719145791.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8755096023719145791.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/TempSuite8755096023719145791.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite8755096023719145791.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite8755096023719145791.adam/_header
/tmp/adamTestMvnFJdRuV3/random.vcf6178632843878748599.vcf
/tmp/adamTestMvnFJdRuV3/TempSuite1518432335427295499
/tmp/adamTestMvnFJdRuV3/TempSuite1324643930817989336.adam
/tmp/adamTestMvnFJdRuV3/TempSuite1324643930817989336.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite1324643930817989336.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1324643930817989336.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1324643930817989336.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite1324643930817989336.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1324643930817989336.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite1324643930817989336.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1324643930817989336.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite1324643930817989336.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1324643930817989336.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1324643930817989336.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1324643930817989336.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/TempSuite1324643930817989336.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite1324643930817989336.adam/_header
/tmp/adamTestMvnFJdRuV3/TempSuite4168746069822200143.adam
/tmp/adamTestMvnFJdRuV3/TempSuite4168746069822200143.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite4168746069822200143.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4168746069822200143.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4168746069822200143.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite4168746069822200143.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4168746069822200143.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite4168746069822200143.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4168746069822200143.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite4168746069822200143.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4168746069822200143.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4168746069822200143.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite4168746069822200143.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4168746069822200143.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite4168746069822200143.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4168746069822200143.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4168746069822200143.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/TempSuite4168746069822200143.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite4168746069822200143.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite6808270807039396861
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite2301750122566095190.interval_list
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite2301750122566095190.interval_list/_SUCCESS
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite2301750122566095190.interval_list/part-00001
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite2301750122566095190.interval_list/.part-00003.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite2301750122566095190.interval_list/part-00000
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite2301750122566095190.interval_list/part-00003
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite2301750122566095190.interval_list/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite2301750122566095190.interval_list/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite2301750122566095190.interval_list/part-00002
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite2301750122566095190.interval_list/.part-00002.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite2301750122566095190.interval_list/.part-00001.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1714310753326656070.adam
/tmp/adamTestMvnFJdRuV3/TempSuite1714310753326656070.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite1714310753326656070.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1714310753326656070.adam/referenceName=1
/tmp/adamTestMvnFJdRuV3/TempSuite1714310753326656070.adam/referenceName=1/positionBin=169
/tmp/adamTestMvnFJdRuV3/TempSuite1714310753326656070.adam/referenceName=1/positionBin=169/.part-00001-f47cd4bf-78f4-4a0f-af38-e6e964cd9aa2.c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1714310753326656070.adam/referenceName=1/positionBin=169/part-00001-f47cd4bf-78f4-4a0f-af38-e6e964cd9aa2.c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite1714310753326656070.adam/referenceName=1/positionBin=14
/tmp/adamTestMvnFJdRuV3/TempSuite1714310753326656070.adam/referenceName=1/positionBin=14/.part-00000-f47cd4bf-78f4-4a0f-af38-e6e964cd9aa2.c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1714310753326656070.adam/referenceName=1/positionBin=14/part-00000-f47cd4bf-78f4-4a0f-af38-e6e964cd9aa2.c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite1714310753326656070.adam/referenceName=1/positionBin=240
/tmp/adamTestMvnFJdRuV3/TempSuite1714310753326656070.adam/referenceName=1/positionBin=240/part-00002-f47cd4bf-78f4-4a0f-af38-e6e964cd9aa2.c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite1714310753326656070.adam/referenceName=1/positionBin=240/.part-00002-f47cd4bf-78f4-4a0f-af38-e6e964cd9aa2.c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1714310753326656070.adam/referenceName=1/positionBin=0
/tmp/adamTestMvnFJdRuV3/TempSuite1714310753326656070.adam/referenceName=1/positionBin=0/.part-00000-f47cd4bf-78f4-4a0f-af38-e6e964cd9aa2.c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1714310753326656070.adam/referenceName=1/positionBin=0/part-00000-f47cd4bf-78f4-4a0f-af38-e6e964cd9aa2.c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite1714310753326656070.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1714310753326656070.adam/_partitionedByStartPos
/tmp/adamTestMvnFJdRuV3/TempSuite1714310753326656070.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite1714310753326656070.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1714310753326656070.adam/._partitionedByStartPos.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1714310753326656070.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/TempSuite4242271769962322848
/tmp/adamTestMvnFJdRuV3/TempSuite7581181523422138500
/tmp/adamTestMvnFJdRuV3/TempSuite3361687401724354903
/tmp/adamTestMvnFJdRuV3/TempSuite6659285960399244809.sam
/tmp/adamTestMvnFJdRuV3/TempSuite6659285960399244809.sam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite6659285960399244809.sam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6659285960399244809.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6659285960399244809.sam/part-r-00000.sam
/tmp/adamTestMvnFJdRuV3/TempSuite5685313834440655042.bed
/tmp/adamTestMvnFJdRuV3/TempSuite5685313834440655042.bed/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite5685313834440655042.bed/part-00001
/tmp/adamTestMvnFJdRuV3/TempSuite5685313834440655042.bed/.part-00003.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5685313834440655042.bed/part-00000
/tmp/adamTestMvnFJdRuV3/TempSuite5685313834440655042.bed/part-00003
/tmp/adamTestMvnFJdRuV3/TempSuite5685313834440655042.bed/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5685313834440655042.bed/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5685313834440655042.bed/part-00002
/tmp/adamTestMvnFJdRuV3/TempSuite5685313834440655042.bed/.part-00002.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5685313834440655042.bed/.part-00001.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite8101626578491505247.bed
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite8101626578491505247.bed/_SUCCESS
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite8101626578491505247.bed/part-00001
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite8101626578491505247.bed/.part-00003.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite8101626578491505247.bed/part-00000
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite8101626578491505247.bed/part-00003
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite8101626578491505247.bed/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite8101626578491505247.bed/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite8101626578491505247.bed/part-00002
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite8101626578491505247.bed/.part-00002.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite8101626578491505247.bed/.part-00001.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5002046198378597315.sam
/tmp/adamTestMvnFJdRuV3/TempSuite5002046198378597315.sam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite5002046198378597315.sam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5002046198378597315.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5002046198378597315.sam/part-r-00000.sam
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite2998631976415424655.bed
/tmp/adamTestMvnFJdRuV3/TempSuite5685313834440655042
/tmp/adamTestMvnFJdRuV3/4789346843367748856
/tmp/adamTestMvnFJdRuV3/4789346843367748856/unordered.sam
/tmp/adamTestMvnFJdRuV3/4789346843367748856/.unordered.sam.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3087921727406067912
/tmp/adamTestMvnFJdRuV3/8862684631499471156
/tmp/adamTestMvnFJdRuV3/8862684631499471156/genotypes.lex.adam
/tmp/adamTestMvnFJdRuV3/8862684631499471156/genotypes.lex.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/8862684631499471156/genotypes.lex.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/8862684631499471156/genotypes.lex.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/8862684631499471156/genotypes.lex.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/8862684631499471156/genotypes.lex.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/8862684631499471156/genotypes.lex.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/8862684631499471156/genotypes.lex.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/8862684631499471156/genotypes.lex.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/8862684631499471156/genotypes.lex.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/8862684631499471156/genotypes.lex.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/8862684631499471156/genotypes.lex.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/8862684631499471156/genotypes.lex.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/8862684631499471156/genotypes.lex.adam/_metadata
/tmp/adamTestMvnFJdRuV3/8862684631499471156/genotypes.lex.adam/_header
/tmp/adamTestMvnFJdRuV3/TempSuite3076511942003619985
/tmp/adamTestMvnFJdRuV3/TempSuite2386419325006687140.adam
/tmp/adamTestMvnFJdRuV3/TempSuite2386419325006687140.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite2386419325006687140.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2386419325006687140.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2386419325006687140.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite2386419325006687140.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2386419325006687140.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite2386419325006687140.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2386419325006687140.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite2386419325006687140.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2386419325006687140.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2386419325006687140.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite2386419325006687140.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2386419325006687140.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite2386419325006687140.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2386419325006687140.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2386419325006687140.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/TempSuite2386419325006687140.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite2386419325006687140.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite7906466724929776506
/tmp/adamTestMvnFJdRuV3/8370723542671135894
/tmp/adamTestMvnFJdRuV3/8370723542671135894/binned.adam
/tmp/adamTestMvnFJdRuV3/8370723542671135894/binned.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/8370723542671135894/binned.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/8370723542671135894/binned.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/8370723542671135894/binned.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/8370723542671135894/binned.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/8370723542671135894/binned.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/8370723542671135894/binned.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/8370723542671135894/binned.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/8370723542671135894/binned.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/8370723542671135894/binned.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/8370723542671135894/binned.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/8370723542671135894/binned.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/8370723542671135894/binned.adam/_metadata
/tmp/adamTestMvnFJdRuV3/8370723542671135894/binned.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/TempSuite238192726399574486.adam
/tmp/adamTestMvnFJdRuV3/TempSuite238192726399574486.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite238192726399574486.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite238192726399574486.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite238192726399574486.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/TempSuite238192726399574486.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite238192726399574486.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite238192726399574486.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite238192726399574486.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite238192726399574486.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite238192726399574486.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite238192726399574486.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite238192726399574486.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite238192726399574486.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite238192726399574486.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite590001865456986171.adam
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite590001865456986171.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite590001865456986171.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite590001865456986171.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite590001865456986171.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite590001865456986171.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite590001865456986171.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite590001865456986171.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite590001865456986171.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite590001865456986171.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite590001865456986171.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite590001865456986171.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite590001865456986171.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite590001865456986171.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite590001865456986171.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite590001865456986171.adam/_metadata
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite590001865456986171.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite4242271769962322848.adam
/tmp/adamTestMvnFJdRuV3/TempSuite4242271769962322848.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite4242271769962322848.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4242271769962322848.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite4242271769962322848.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4242271769962322848.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite4242271769962322848.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4242271769962322848.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite4242271769962322848.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4242271769962322848.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4242271769962322848.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4242271769962322848.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite4242271769962322848.adam/_header
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite4416106700732028244
/tmp/adamTestMvnFJdRuV3/6149116080234313878
/tmp/adamTestMvnFJdRuV3/6149116080234313878/.artificial.cram.crc
/tmp/adamTestMvnFJdRuV3/6149116080234313878/artificial.cram
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite8732260955763195261
/tmp/adamTestMvnFJdRuV3/TempSuite2736245027118150635
/tmp/adamTestMvnFJdRuV3/TempSuite5524922072554715177.adam
/tmp/adamTestMvnFJdRuV3/TempSuite5524922072554715177.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite5524922072554715177.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5524922072554715177.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite5524922072554715177.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5524922072554715177.adam/part-00000-eb66a718-e75b-4638-98cf-a0ed1b84af4d-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite5524922072554715177.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5524922072554715177.adam/.part-00000-eb66a718-e75b-4638-98cf-a0ed1b84af4d-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5524922072554715177.adam/_header
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite5496070870948712938
/tmp/adamTestMvnFJdRuV3/TempSuite1923037016713368775
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite1927141407573315022
/tmp/adamTestMvnFJdRuV3/TempSuite6425699306672987076
/tmp/adamTestMvnFJdRuV3/TempSuite7970479371521997293
/tmp/adamTestMvnFJdRuV3/TempSuite849009750383647266
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite7142948769130131826.fastq
/tmp/adamTestMvnFJdRuV3/TempSuite3881195177894558697.adam
/tmp/adamTestMvnFJdRuV3/TempSuite3881195177894558697.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite3881195177894558697.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3881195177894558697.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite3881195177894558697.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3881195177894558697.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite3881195177894558697.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3881195177894558697.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite3881195177894558697.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3881195177894558697.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3881195177894558697.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3881195177894558697.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite3881195177894558697.adam/_header
/tmp/adamTestMvnFJdRuV3/javaAC5403625690680473488
/tmp/adamTestMvnFJdRuV3/javaAC5403625690680473488/testRdd.genotype.adam
/tmp/adamTestMvnFJdRuV3/javaAC5403625690680473488/testRdd.genotype.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/javaAC5403625690680473488/testRdd.genotype.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/javaAC5403625690680473488/testRdd.genotype.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/javaAC5403625690680473488/testRdd.genotype.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/javaAC5403625690680473488/testRdd.genotype.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/javaAC5403625690680473488/testRdd.genotype.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/javaAC5403625690680473488/testRdd.genotype.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/javaAC5403625690680473488/testRdd.genotype.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/javaAC5403625690680473488/testRdd.genotype.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/javaAC5403625690680473488/testRdd.genotype.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/javaAC5403625690680473488/testRdd.genotype.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/javaAC5403625690680473488/testRdd.genotype.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/javaAC5403625690680473488/testRdd.genotype.adam/_metadata
/tmp/adamTestMvnFJdRuV3/javaAC5403625690680473488/testRdd.genotype.adam/_header
/tmp/adamTestMvnFJdRuV3/TempSuite3199108481034103061
/tmp/adamTestMvnFJdRuV3/TempSuite1823077896136862755fragments.adam
/tmp/adamTestMvnFJdRuV3/TempSuite1823077896136862755fragments.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite1823077896136862755fragments.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1823077896136862755fragments.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite1823077896136862755fragments.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/TempSuite1823077896136862755fragments.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1823077896136862755fragments.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite1823077896136862755fragments.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1823077896136862755fragments.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1823077896136862755fragments.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite1823077896136862755fragments.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1823077896136862755fragments.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1823077896136862755fragments.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1823077896136862755fragments.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite1823077896136862755fragments.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/sorted-variants.vcf6913452461060122541.vcf
/tmp/adamTestMvnFJdRuV3/TempSuite7020928097668492395.adam
/tmp/adamTestMvnFJdRuV3/TempSuite7020928097668492395.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite7020928097668492395.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7020928097668492395.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7020928097668492395.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite7020928097668492395.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7020928097668492395.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite7020928097668492395.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7020928097668492395.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite7020928097668492395.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7020928097668492395.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7020928097668492395.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7020928097668492395.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/TempSuite7020928097668492395.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite7020928097668492395.adam/_header
/tmp/adamTestMvnFJdRuV3/TempSuite5993335469970442510
/tmp/adamTestMvnFJdRuV3/TempSuite7330046294286682530
/tmp/adamTestMvnFJdRuV3/TempSuite3271626516389425105
/tmp/adamTestMvnFJdRuV3/TempSuite8170225613614646374.adam
/tmp/adamTestMvnFJdRuV3/TempSuite8170225613614646374.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite8170225613614646374.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8170225613614646374.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/TempSuite8170225613614646374.adam/part-00000-f4422dc1-32f9-4fd3-9394-ffd7b1896db3-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite8170225613614646374.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite8170225613614646374.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8170225613614646374.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8170225613614646374.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8170225613614646374.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/TempSuite8170225613614646374.adam/.part-00000-f4422dc1-32f9-4fd3-9394-ffd7b1896db3-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite618532219242808350.bed
/tmp/adamTestMvnFJdRuV3/TempSuite618532219242808350.bed/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite618532219242808350.bed/part-00000
/tmp/adamTestMvnFJdRuV3/TempSuite618532219242808350.bed/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/TempSuite618532219242808350.bed/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/unordered.sam72389734983190114.sam
/tmp/adamTestMvnFJdRuV3/sample_coverage.bed8881791852218679839.bed
/tmp/adamTestMvnFJdRuV3/TempSuite1308281619633233403.adam
/tmp/adamTestMvnFJdRuV3/TempSuite1308281619633233403.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite1308281619633233403.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1308281619633233403.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1308281619633233403.adam/part-r-00004.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite1308281619633233403.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite1308281619633233403.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1308281619633233403.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite1308281619633233403.adam/.part-r-00004.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1308281619633233403.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1308281619633233403.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite1308281619633233403.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1308281619633233403.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1308281619633233403.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite1308281619633233403.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1308281619633233403.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite1308281619633233403.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1308281619633233403.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1308281619633233403.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/TempSuite1308281619633233403.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite1308281619633233403.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite3744507512538980873
/tmp/adamTestMvnFJdRuV3/TempSuite4488215251402927696.adam
/tmp/adamTestMvnFJdRuV3/TempSuite4488215251402927696.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite4488215251402927696.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4488215251402927696.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite4488215251402927696.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4488215251402927696.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite4488215251402927696.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4488215251402927696.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite4488215251402927696.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4488215251402927696.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4488215251402927696.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4488215251402927696.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite4488215251402927696.adam/_header
/tmp/adamTestMvnFJdRuV3/TempSuite6659285960399244809
/tmp/adamTestMvnFJdRuV3/TempSuite4644598872047841295.adam
/tmp/adamTestMvnFJdRuV3/TempSuite4644598872047841295.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite4644598872047841295.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4644598872047841295.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite4644598872047841295.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4644598872047841295.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite4644598872047841295.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4644598872047841295.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite4644598872047841295.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4644598872047841295.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4644598872047841295.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4644598872047841295.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite4644598872047841295.adam/_header
/tmp/adamTestMvnFJdRuV3/javaAC5922260181982698424
/tmp/adamTestMvnFJdRuV3/javaAC5922260181982698424/testRdd.feature.adam
/tmp/adamTestMvnFJdRuV3/javaAC5922260181982698424/testRdd.feature.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/javaAC5922260181982698424/testRdd.feature.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/javaAC5922260181982698424/testRdd.feature.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/javaAC5922260181982698424/testRdd.feature.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/javaAC5922260181982698424/testRdd.feature.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/javaAC5922260181982698424/testRdd.feature.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnFJdRuV3/javaAC5922260181982698424/testRdd.feature.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/javaAC5922260181982698424/testRdd.feature.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/javaAC5922260181982698424/testRdd.feature.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/javaAC5922260181982698424/testRdd.feature.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/javaAC5922260181982698424/testRdd.feature.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnFJdRuV3/javaAC5922260181982698424/testRdd.feature.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/javaAC5922260181982698424/testRdd.feature.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/javaAC5922260181982698424/testRdd.feature.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/javaAC5922260181982698424/testRdd.feature.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/javaAC5922260181982698424/testRdd.feature.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/javaAC5922260181982698424/testRdd.feature.adam/_metadata
/tmp/adamTestMvnFJdRuV3/javaAC5922260181982698424/testRdd.feature.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite4604659501689116201
/tmp/adamTestMvnFJdRuV3/TempSuite8196296290456981112
/tmp/adamTestMvnFJdRuV3/3482327526070100282
/tmp/adamTestMvnFJdRuV3/3482327526070100282/ordered.sam
/tmp/adamTestMvnFJdRuV3/3482327526070100282/.ordered.sam.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4142836752163202344
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite4882940254927142681.adam
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite4882940254927142681.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite4882940254927142681.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite4882940254927142681.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite4882940254927142681.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite4882940254927142681.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite4882940254927142681.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite4882940254927142681.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite4882940254927142681.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite4882940254927142681.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite4882940254927142681.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite4882940254927142681.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite4882940254927142681.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite4882940254927142681.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite4882940254927142681.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite4882940254927142681.adam/_metadata
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite4882940254927142681.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite4939900219915379429
/tmp/adamTestMvnFJdRuV3/TempSuite455653161106435022.sam
/tmp/adamTestMvnFJdRuV3/TempSuite455653161106435022.sam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite455653161106435022.sam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite455653161106435022.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnFJdRuV3/TempSuite455653161106435022.sam/part-r-00000.sam
/tmp/adamTestMvnFJdRuV3/TempSuite7909542702338227040.adam
/tmp/adamTestMvnFJdRuV3/TempSuite7909542702338227040.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite7909542702338227040.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7909542702338227040.adam/.part-00000-4f3327d6-8685-4343-b0d5-dd5f576bc559-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7909542702338227040.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/TempSuite7909542702338227040.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite7909542702338227040.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7909542702338227040.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7909542702338227040.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7909542702338227040.adam/part-00000-4f3327d6-8685-4343-b0d5-dd5f576bc559-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite7909542702338227040.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/TempSuite5813473464206718300
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite6431431204818629340.bed
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite6431431204818629340.bed/_SUCCESS
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite6431431204818629340.bed/part-00001
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite6431431204818629340.bed/.part-00003.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite6431431204818629340.bed/part-00000
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite6431431204818629340.bed/part-00003
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite6431431204818629340.bed/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite6431431204818629340.bed/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite6431431204818629340.bed/part-00002
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite6431431204818629340.bed/.part-00002.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite6431431204818629340.bed/.part-00001.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite1927141407573315022.bed
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite5752909366085762787.bed
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite5752909366085762787.bed/_SUCCESS
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite5752909366085762787.bed/part-00001
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite5752909366085762787.bed/.part-00003.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite5752909366085762787.bed/part-00000
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite5752909366085762787.bed/part-00003
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite5752909366085762787.bed/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite5752909366085762787.bed/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite5752909366085762787.bed/part-00002
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite5752909366085762787.bed/.part-00002.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite5752909366085762787.bed/.part-00001.crc
/tmp/adamTestMvnFJdRuV3/TempSuite189412097155390123
/tmp/adamTestMvnFJdRuV3/TempSuite7019795226152890274.adam
/tmp/adamTestMvnFJdRuV3/TempSuite7019795226152890274.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite7019795226152890274.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7019795226152890274.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite7019795226152890274.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/TempSuite7019795226152890274.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7019795226152890274.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite7019795226152890274.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7019795226152890274.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7019795226152890274.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite7019795226152890274.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7019795226152890274.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7019795226152890274.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7019795226152890274.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite7019795226152890274.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/TempSuite3673780340075132740.adam
/tmp/adamTestMvnFJdRuV3/TempSuite3673780340075132740.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite3673780340075132740.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3673780340075132740.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3673780340075132740.adam/part-00000-ebe16a7e-3177-4aef-84c3-60c489f19ccb-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite3673780340075132740.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite3673780340075132740.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3673780340075132740.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3673780340075132740.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/TempSuite3673780340075132740.adam/.part-00000-ebe16a7e-3177-4aef-84c3-60c489f19ccb-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3673780340075132740.adam/_header
/tmp/adamTestMvnFJdRuV3/TempSuite7500156458354561903.bam
/tmp/adamTestMvnFJdRuV3/TempSuite7500156458354561903.bam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite7500156458354561903.bam/part-r-00000.bam
/tmp/adamTestMvnFJdRuV3/TempSuite7500156458354561903.bam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7500156458354561903.bam/.part-r-00000.bam.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite571536286070033619
/tmp/adamTestMvnFJdRuV3/TempSuite8022786587214786433.adam
/tmp/adamTestMvnFJdRuV3/TempSuite8022786587214786433.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite8022786587214786433.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8022786587214786433.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite8022786587214786433.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8022786587214786433.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite8022786587214786433.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/TempSuite8022786587214786433.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8022786587214786433.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite8022786587214786433.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8022786587214786433.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8022786587214786433.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite8022786587214786433.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8022786587214786433.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8022786587214786433.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite8022786587214786433.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8022786587214786433.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8022786587214786433.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8022786587214786433.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite8022786587214786433.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite8022786587214786433.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/TempSuite98816787860232887.adam
/tmp/adamTestMvnFJdRuV3/TempSuite98816787860232887.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite98816787860232887.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite98816787860232887.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite98816787860232887.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/TempSuite98816787860232887.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite98816787860232887.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite98816787860232887.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite98816787860232887.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite98816787860232887.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite98816787860232887.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite98816787860232887.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite98816787860232887.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite98816787860232887.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite98816787860232887.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite4801000712403965046.gff3
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite4801000712403965046.gff3/_SUCCESS
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite4801000712403965046.gff3/part-00001
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite4801000712403965046.gff3/.part-00003.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite4801000712403965046.gff3/part-00000
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite4801000712403965046.gff3/part-00003
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite4801000712403965046.gff3/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite4801000712403965046.gff3/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite4801000712403965046.gff3/part-00002
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite4801000712403965046.gff3/.part-00002.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite4801000712403965046.gff3/.part-00001.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3020022535985798844.fq
/tmp/adamTestMvnFJdRuV3/TempSuite3020022535985798844.fq/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite3020022535985798844.fq/part-00000
/tmp/adamTestMvnFJdRuV3/TempSuite3020022535985798844.fq/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3020022535985798844.fq/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4043748969928930817
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3103869485407682944.bed
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3103869485407682944.bed/_SUCCESS
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3103869485407682944.bed/part-00001
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3103869485407682944.bed/.part-00003.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3103869485407682944.bed/part-00000
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3103869485407682944.bed/part-00003
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3103869485407682944.bed/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3103869485407682944.bed/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3103869485407682944.bed/part-00002
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3103869485407682944.bed/.part-00002.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3103869485407682944.bed/.part-00001.crc
/tmp/adamTestMvnFJdRuV3/.FeatureDatasetFunctionsSuite8147723213460615746.bed.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite7981822180348709984
/tmp/adamTestMvnFJdRuV3/TempSuite6537300306486605061.adam
/tmp/adamTestMvnFJdRuV3/TempSuite6537300306486605061.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite6537300306486605061.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6537300306486605061.adam/part-00002-4bef911e-6f82-44d2-9725-794b3a082a55-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite6537300306486605061.adam/.part-00001-4bef911e-6f82-44d2-9725-794b3a082a55-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6537300306486605061.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite6537300306486605061.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6537300306486605061.adam/part-00001-4bef911e-6f82-44d2-9725-794b3a082a55-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite6537300306486605061.adam/.part-00002-4bef911e-6f82-44d2-9725-794b3a082a55-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6537300306486605061.adam/part-00000-4bef911e-6f82-44d2-9725-794b3a082a55-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite6537300306486605061.adam/.part-00000-4bef911e-6f82-44d2-9725-794b3a082a55-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite238192726399574486
/tmp/adamTestMvnFJdRuV3/TempSuite7970479371521997293.adam
/tmp/adamTestMvnFJdRuV3/TempSuite7970479371521997293.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite7970479371521997293.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7970479371521997293.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite7970479371521997293.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7970479371521997293.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite7970479371521997293.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7970479371521997293.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite7970479371521997293.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7970479371521997293.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7970479371521997293.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite8291220415728940651
/tmp/adamTestMvnFJdRuV3/.FeatureDatasetFunctionsSuite3341923158397658977.gff3.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1469310106654178994
/tmp/adamTestMvnFJdRuV3/TempSuite1044751477327268057
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite1537841012162825
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite7476330519202798986.bed
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite7476330519202798986.bed/_SUCCESS
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite7476330519202798986.bed/part-00001
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite7476330519202798986.bed/.part-00003.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite7476330519202798986.bed/part-00000
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite7476330519202798986.bed/part-00003
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite7476330519202798986.bed/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite7476330519202798986.bed/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite7476330519202798986.bed/part-00002
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite7476330519202798986.bed/.part-00002.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite7476330519202798986.bed/.part-00001.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4845464615149423362
/tmp/adamTestMvnFJdRuV3/sample1.queryname.sam3131175658799921638.queryname.sam
/tmp/adamTestMvnFJdRuV3/.FeatureDatasetFunctionsSuite1220100475826619811.narrowPeak.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3937429171926509711
/tmp/adamTestMvnFJdRuV3/TempSuite3273626751593371350.adam
/tmp/adamTestMvnFJdRuV3/TempSuite3273626751593371350.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite3273626751593371350.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3273626751593371350.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3273626751593371350.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite3273626751593371350.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3273626751593371350.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite3273626751593371350.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3273626751593371350.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite3273626751593371350.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3273626751593371350.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3273626751593371350.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3273626751593371350.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/TempSuite3273626751593371350.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite3273626751593371350.adam/_header
/tmp/adamTestMvnFJdRuV3/TempSuite8604443819303596036.2.adam
/tmp/adamTestMvnFJdRuV3/TempSuite8604443819303596036.2.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite8604443819303596036.2.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8604443819303596036.2.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite8604443819303596036.2.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/TempSuite8604443819303596036.2.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8604443819303596036.2.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite8604443819303596036.2.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8604443819303596036.2.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8604443819303596036.2.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite8604443819303596036.2.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8604443819303596036.2.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8604443819303596036.2.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8604443819303596036.2.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite8604443819303596036.2.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/TempSuite4525419714595241887.adam
/tmp/adamTestMvnFJdRuV3/TempSuite4525419714595241887.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite4525419714595241887.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4525419714595241887.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4525419714595241887.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite4525419714595241887.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4525419714595241887.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite4525419714595241887.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4525419714595241887.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite4525419714595241887.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4525419714595241887.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4525419714595241887.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite4525419714595241887.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4525419714595241887.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite4525419714595241887.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4525419714595241887.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4525419714595241887.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/TempSuite4525419714595241887.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite4525419714595241887.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnFJdRuV3/1762332262428492481
/tmp/adamTestMvnFJdRuV3/1762332262428492481/unordered.adam
/tmp/adamTestMvnFJdRuV3/1762332262428492481/unordered.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/1762332262428492481/unordered.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/1762332262428492481/unordered.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/1762332262428492481/unordered.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/1762332262428492481/unordered.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/1762332262428492481/unordered.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/1762332262428492481/unordered.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/1762332262428492481/unordered.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/1762332262428492481/unordered.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/1762332262428492481/unordered.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/1762332262428492481/unordered.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/1762332262428492481/unordered.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/1762332262428492481/unordered.adam/_metadata
/tmp/adamTestMvnFJdRuV3/1762332262428492481/unordered.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/3746868491182983277
/tmp/adamTestMvnFJdRuV3/3746868491182983277/out.bam
/tmp/adamTestMvnFJdRuV3/3746868491182983277/out.bam_head
/tmp/adamTestMvnFJdRuV3/3746868491182983277/.out.bam.crc
/tmp/adamTestMvnFJdRuV3/3746868491182983277/out.bam_tail
/tmp/adamTestMvnFJdRuV3/3746868491182983277/out.bam_tail/_SUCCESS
/tmp/adamTestMvnFJdRuV3/3746868491182983277/out.bam_tail/.part-r-00001.bam.crc
/tmp/adamTestMvnFJdRuV3/3746868491182983277/out.bam_tail/part-r-00000.bam
/tmp/adamTestMvnFJdRuV3/3746868491182983277/out.bam_tail/part-r-00001.bam
/tmp/adamTestMvnFJdRuV3/3746868491182983277/out.bam_tail/.part-r-00002.bam.crc
/tmp/adamTestMvnFJdRuV3/3746868491182983277/out.bam_tail/part-r-00003.bam
/tmp/adamTestMvnFJdRuV3/3746868491182983277/out.bam_tail/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/3746868491182983277/out.bam_tail/.part-r-00003.bam.crc
/tmp/adamTestMvnFJdRuV3/3746868491182983277/out.bam_tail/part-r-00002.bam
/tmp/adamTestMvnFJdRuV3/3746868491182983277/out.bam_tail/.part-r-00000.bam.crc
/tmp/adamTestMvnFJdRuV3/3746868491182983277/.out.bam_head.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2671545049990549903.adam
/tmp/adamTestMvnFJdRuV3/TempSuite2671545049990549903.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite2671545049990549903.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2671545049990549903.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite2671545049990549903.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2671545049990549903.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite2671545049990549903.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/TempSuite2671545049990549903.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2671545049990549903.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite2671545049990549903.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2671545049990549903.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2671545049990549903.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite2671545049990549903.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2671545049990549903.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2671545049990549903.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite2671545049990549903.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2671545049990549903.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2671545049990549903.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2671545049990549903.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite2671545049990549903.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite2671545049990549903.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/TempSuite6261038044193152471
/tmp/adamTestMvnFJdRuV3/TempSuite5813473464206718300.adam
/tmp/adamTestMvnFJdRuV3/TempSuite5813473464206718300.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite5813473464206718300.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5813473464206718300.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite5813473464206718300.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5813473464206718300.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite5813473464206718300.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/TempSuite5813473464206718300.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5813473464206718300.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite5813473464206718300.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5813473464206718300.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5813473464206718300.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite5813473464206718300.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5813473464206718300.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5813473464206718300.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite5813473464206718300.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5813473464206718300.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5813473464206718300.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5813473464206718300.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite5813473464206718300.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite5813473464206718300.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/TempSuite88609889629582961
/tmp/adamTestMvnFJdRuV3/TempSuite2499036699904384666
/tmp/adamTestMvnFJdRuV3/unordered.sam8536560689299140591.sam
/tmp/adamTestMvnFJdRuV3/5871327534760971875
/tmp/adamTestMvnFJdRuV3/5871327534760971875/binned.adam
/tmp/adamTestMvnFJdRuV3/5871327534760971875/binned.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/5871327534760971875/binned.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/5871327534760971875/binned.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/5871327534760971875/binned.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/5871327534760971875/binned.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/5871327534760971875/binned.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/5871327534760971875/binned.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/5871327534760971875/binned.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/5871327534760971875/binned.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/5871327534760971875/binned.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/5871327534760971875/binned.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/5871327534760971875/binned.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/5871327534760971875/binned.adam/_metadata
/tmp/adamTestMvnFJdRuV3/5871327534760971875/binned.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/TempSuite1730783505221017109
/tmp/adamTestMvnFJdRuV3/TempSuite1310340958300664754
/tmp/adamTestMvnFJdRuV3/1867995201002475283
/tmp/adamTestMvnFJdRuV3/1867995201002475283/.unordered.bam.crc
/tmp/adamTestMvnFJdRuV3/1867995201002475283/unordered.bam
/tmp/adamTestMvnFJdRuV3/TempSuite3881195177894558697
/tmp/adamTestMvnFJdRuV3/TempSuite7709996946053268279reads12.sam
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite7969982755090076974
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite8147723213460615746
/tmp/adamTestMvnFJdRuV3/TempSuite431917955960544991.adam
/tmp/adamTestMvnFJdRuV3/TempSuite431917955960544991.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite431917955960544991.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite431917955960544991.adam/part-00000-82b39e5f-1b60-4ab3-9e82-b598518cf839-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite431917955960544991.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/TempSuite431917955960544991.adam/.part-00000-82b39e5f-1b60-4ab3-9e82-b598518cf839-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite431917955960544991.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite431917955960544991.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite431917955960544991.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite431917955960544991.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite431917955960544991.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/1599678319455-0
/tmp/adamTestMvnFJdRuV3/1599678319455-0/test.gvcf.vcf
/tmp/adamTestMvnFJdRuV3/1599678319455-0/.test.gvcf.vcf.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite8572534419531378087.bed
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite8572534419531378087.bed/_SUCCESS
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite8572534419531378087.bed/part-00001
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite8572534419531378087.bed/.part-00003.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite8572534419531378087.bed/part-00000
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite8572534419531378087.bed/part-00003
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite8572534419531378087.bed/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite8572534419531378087.bed/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite8572534419531378087.bed/part-00002
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite8572534419531378087.bed/.part-00002.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite8572534419531378087.bed/.part-00001.crc
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite2452796640442294561
/tmp/adamTestMvnFJdRuV3/TempSuite8319970145263503973.adam
/tmp/adamTestMvnFJdRuV3/TempSuite8319970145263503973.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite8319970145263503973.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8319970145263503973.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite8319970145263503973.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/TempSuite8319970145263503973.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8319970145263503973.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite8319970145263503973.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8319970145263503973.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8319970145263503973.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite8319970145263503973.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8319970145263503973.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8319970145263503973.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8319970145263503973.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite8319970145263503973.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite1220100475826619811.narrowPeak
/tmp/adamTestMvnFJdRuV3/TempSuite4403951937069567440.adam
/tmp/adamTestMvnFJdRuV3/TempSuite4403951937069567440.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite4403951937069567440.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4403951937069567440.adam/.part-00002-04f9e3fc-4e2c-41e0-a022-105f452595e0-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4403951937069567440.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/TempSuite4403951937069567440.adam/.part-00001-04f9e3fc-4e2c-41e0-a022-105f452595e0-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4403951937069567440.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite4403951937069567440.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4403951937069567440.adam/.part-00000-04f9e3fc-4e2c-41e0-a022-105f452595e0-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4403951937069567440.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4403951937069567440.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4403951937069567440.adam/part-00000-04f9e3fc-4e2c-41e0-a022-105f452595e0-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite4403951937069567440.adam/part-00002-04f9e3fc-4e2c-41e0-a022-105f452595e0-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite4403951937069567440.adam/part-00001-04f9e3fc-4e2c-41e0-a022-105f452595e0-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite4403951937069567440.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/ordered.sam6994620186352413620.sam
/tmp/adamTestMvnFJdRuV3/TempSuite1384596408878682843
/tmp/adamTestMvnFJdRuV3/TempSuite6400560165425806568
/tmp/adamTestMvnFJdRuV3/TempSuite5949475325397951026
/tmp/adamTestMvnFJdRuV3/random.vcf4199186173411583804.vcf
/tmp/adamTestMvnFJdRuV3/TempSuite3487442720622559608.bam
/tmp/adamTestMvnFJdRuV3/TempSuite175808066867008222.adam
/tmp/adamTestMvnFJdRuV3/TempSuite175808066867008222.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite175808066867008222.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite175808066867008222.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/TempSuite175808066867008222.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite175808066867008222.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite175808066867008222.adam/.part-00000-975c7cf4-af66-4939-9349-2268529879dc-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite175808066867008222.adam/part-00000-975c7cf4-af66-4939-9349-2268529879dc-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite175808066867008222.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite175808066867008222.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite175808066867008222.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/.TempSuite6772140507236520536.sam.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6943229720393802694_2.fq
/tmp/adamTestMvnFJdRuV3/TempSuite6943229720393802694_2.fq/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite6943229720393802694_2.fq/part-00000
/tmp/adamTestMvnFJdRuV3/TempSuite6943229720393802694_2.fq/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6943229720393802694_2.fq/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2913999019679392782.bed
/tmp/adamTestMvnFJdRuV3/TempSuite2913999019679392782.bed/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite2913999019679392782.bed/part-00000
/tmp/adamTestMvnFJdRuV3/TempSuite2913999019679392782.bed/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2913999019679392782.bed/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7133231761547473214
/tmp/adamTestMvnFJdRuV3/TempSuite4258105014268295772
/tmp/adamTestMvnFJdRuV3/TempSuite6536549731907911316
/tmp/adamTestMvnFJdRuV3/TempSuite8050997081596332864
/tmp/adamTestMvnFJdRuV3/TempSuite7769099598641517199.adam
/tmp/adamTestMvnFJdRuV3/TempSuite7769099598641517199.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite7769099598641517199.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7769099598641517199.adam/referenceName=1
/tmp/adamTestMvnFJdRuV3/TempSuite7769099598641517199.adam/referenceName=1/positionBin=169
/tmp/adamTestMvnFJdRuV3/TempSuite7769099598641517199.adam/referenceName=1/positionBin=169/part-00001-2c9c2bab-cc0a-4b67-a778-41b228275ab5.c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite7769099598641517199.adam/referenceName=1/positionBin=169/.part-00001-2c9c2bab-cc0a-4b67-a778-41b228275ab5.c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7769099598641517199.adam/referenceName=1/positionBin=14
/tmp/adamTestMvnFJdRuV3/TempSuite7769099598641517199.adam/referenceName=1/positionBin=14/part-00000-2c9c2bab-cc0a-4b67-a778-41b228275ab5.c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite7769099598641517199.adam/referenceName=1/positionBin=14/.part-00000-2c9c2bab-cc0a-4b67-a778-41b228275ab5.c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7769099598641517199.adam/referenceName=1/positionBin=240
/tmp/adamTestMvnFJdRuV3/TempSuite7769099598641517199.adam/referenceName=1/positionBin=240/.part-00002-2c9c2bab-cc0a-4b67-a778-41b228275ab5.c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7769099598641517199.adam/referenceName=1/positionBin=240/part-00002-2c9c2bab-cc0a-4b67-a778-41b228275ab5.c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite7769099598641517199.adam/referenceName=1/positionBin=0
/tmp/adamTestMvnFJdRuV3/TempSuite7769099598641517199.adam/referenceName=1/positionBin=0/part-00000-2c9c2bab-cc0a-4b67-a778-41b228275ab5.c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite7769099598641517199.adam/referenceName=1/positionBin=0/.part-00000-2c9c2bab-cc0a-4b67-a778-41b228275ab5.c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7769099598641517199.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7769099598641517199.adam/_partitionedByStartPos
/tmp/adamTestMvnFJdRuV3/TempSuite7769099598641517199.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite7769099598641517199.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7769099598641517199.adam/._partitionedByStartPos.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7769099598641517199.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/.TempSuite1247701737506617862.bam.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite4416106700732028244.interval_list
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite4416106700732028244.interval_list/_SUCCESS
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite4416106700732028244.interval_list/part-00001
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite4416106700732028244.interval_list/.part-00003.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite4416106700732028244.interval_list/part-00000
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite4416106700732028244.interval_list/part-00003
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite4416106700732028244.interval_list/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite4416106700732028244.interval_list/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite4416106700732028244.interval_list/part-00002
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite4416106700732028244.interval_list/.part-00002.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite4416106700732028244.interval_list/.part-00001.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6798087989537755003
/tmp/adamTestMvnFJdRuV3/TempSuite3349031899868061196.adam
/tmp/adamTestMvnFJdRuV3/TempSuite3349031899868061196.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite3349031899868061196.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3349031899868061196.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3349031899868061196.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite3349031899868061196.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3349031899868061196.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite3349031899868061196.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3349031899868061196.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite3349031899868061196.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3349031899868061196.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3349031899868061196.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3349031899868061196.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/TempSuite3349031899868061196.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite3349031899868061196.adam/_header
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite6820910683185701502.narrowPeak
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite6820910683185701502.narrowPeak/_SUCCESS
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite6820910683185701502.narrowPeak/part-00001
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite6820910683185701502.narrowPeak/.part-00003.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite6820910683185701502.narrowPeak/part-00000
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite6820910683185701502.narrowPeak/part-00003
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite6820910683185701502.narrowPeak/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite6820910683185701502.narrowPeak/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite6820910683185701502.narrowPeak/part-00002
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite6820910683185701502.narrowPeak/.part-00002.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite6820910683185701502.narrowPeak/.part-00001.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5665198701892279127.adam
/tmp/adamTestMvnFJdRuV3/TempSuite5665198701892279127.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite5665198701892279127.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5665198701892279127.adam/referenceName=1
/tmp/adamTestMvnFJdRuV3/TempSuite5665198701892279127.adam/referenceName=1/positionBin=0
/tmp/adamTestMvnFJdRuV3/TempSuite5665198701892279127.adam/referenceName=1/positionBin=0/part-00000-5b54680b-b703-4b39-b293-0ec2e14d73f3.c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite5665198701892279127.adam/referenceName=1/positionBin=0/.part-00000-5b54680b-b703-4b39-b293-0ec2e14d73f3.c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5665198701892279127.adam/referenceName=13
/tmp/adamTestMvnFJdRuV3/TempSuite5665198701892279127.adam/referenceName=13/positionBin=0
/tmp/adamTestMvnFJdRuV3/TempSuite5665198701892279127.adam/referenceName=13/positionBin=0/part-00000-5b54680b-b703-4b39-b293-0ec2e14d73f3.c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite5665198701892279127.adam/referenceName=13/positionBin=0/.part-00000-5b54680b-b703-4b39-b293-0ec2e14d73f3.c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5665198701892279127.adam/_partitionedByStartPos
/tmp/adamTestMvnFJdRuV3/TempSuite5665198701892279127.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite5665198701892279127.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5665198701892279127.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5665198701892279127.adam/._partitionedByStartPos.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5665198701892279127.adam/referenceName=2
/tmp/adamTestMvnFJdRuV3/TempSuite5665198701892279127.adam/referenceName=2/positionBin=0
/tmp/adamTestMvnFJdRuV3/TempSuite5665198701892279127.adam/referenceName=2/positionBin=0/part-00000-5b54680b-b703-4b39-b293-0ec2e14d73f3.c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite5665198701892279127.adam/referenceName=2/positionBin=0/.part-00000-5b54680b-b703-4b39-b293-0ec2e14d73f3.c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5665198701892279127.adam/_header
/tmp/adamTestMvnFJdRuV3/TempSuite2155062374785806970.adam
/tmp/adamTestMvnFJdRuV3/TempSuite2155062374785806970.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite2155062374785806970.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2155062374785806970.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2155062374785806970.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite2155062374785806970.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2155062374785806970.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite2155062374785806970.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2155062374785806970.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite2155062374785806970.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2155062374785806970.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2155062374785806970.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2155062374785806970.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/TempSuite2155062374785806970.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite2155062374785806970.adam/_header
/tmp/adamTestMvnFJdRuV3/TempSuite7530526881175904758.adam
/tmp/adamTestMvnFJdRuV3/TempSuite7530526881175904758.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite7530526881175904758.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7530526881175904758.adam/.part-00000-647ea94a-6a61-4bf0-8482-62cdae23c6f1-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7530526881175904758.adam/part-00000-647ea94a-6a61-4bf0-8482-62cdae23c6f1-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite7530526881175904758.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite7530526881175904758.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7530526881175904758.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7530526881175904758.adam/_header
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite5559778187241024668
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite2889964889729171619
/tmp/adamTestMvnFJdRuV3/1891201861571347266
/tmp/adamTestMvnFJdRuV3/TempSuite5912201012000064014
/tmp/adamTestMvnFJdRuV3/5716033447160233060
/tmp/adamTestMvnFJdRuV3/5716033447160233060/sorted.vcf
/tmp/adamTestMvnFJdRuV3/5716033447160233060/.sorted.vcf.crc
/tmp/adamTestMvnFJdRuV3/.SequenceDatasetSuite530847827257945765.fasta.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8385211215246554403.adam
/tmp/adamTestMvnFJdRuV3/TempSuite8385211215246554403.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite8385211215246554403.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8385211215246554403.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite8385211215246554403.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/TempSuite8385211215246554403.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8385211215246554403.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite8385211215246554403.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8385211215246554403.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8385211215246554403.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite8385211215246554403.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8385211215246554403.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8385211215246554403.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8385211215246554403.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite8385211215246554403.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/.TempSuite6798087989537755003.sam.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4043748969928930817.bed
/tmp/adamTestMvnFJdRuV3/TempSuite4043748969928930817.bed/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite4043748969928930817.bed/part-00000
/tmp/adamTestMvnFJdRuV3/TempSuite4043748969928930817.bed/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4043748969928930817.bed/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6536549731907911316.bam
/tmp/adamTestMvnFJdRuV3/TempSuite6536549731907911316.bam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite6536549731907911316.bam/part-r-00000.bam
/tmp/adamTestMvnFJdRuV3/TempSuite6536549731907911316.bam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6536549731907911316.bam/.part-r-00000.bam.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5953079541268031757
/tmp/adamTestMvnFJdRuV3/TempSuite6261038044193152471.adam
/tmp/adamTestMvnFJdRuV3/TempSuite6261038044193152471.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite6261038044193152471.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6261038044193152471.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite6261038044193152471.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/TempSuite6261038044193152471.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6261038044193152471.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite6261038044193152471.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6261038044193152471.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6261038044193152471.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite6261038044193152471.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6261038044193152471.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6261038044193152471.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6261038044193152471.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite6261038044193152471.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/TempSuite4353591314744885001
/tmp/adamTestMvnFJdRuV3/TempSuite2948002649884429379
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite4935148978010109044
/tmp/adamTestMvnFJdRuV3/TempSuite3020022535985798844
/tmp/adamTestMvnFJdRuV3/6729168933584385574
/tmp/adamTestMvnFJdRuV3/6729168933584385574/coverage.adam
/tmp/adamTestMvnFJdRuV3/6729168933584385574/coverage.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/6729168933584385574/coverage.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/6729168933584385574/coverage.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/6729168933584385574/coverage.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/6729168933584385574/coverage.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/6729168933584385574/coverage.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/6729168933584385574/coverage.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/6729168933584385574/coverage.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/6729168933584385574/coverage.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/6729168933584385574/coverage.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/6729168933584385574/coverage.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/6729168933584385574/coverage.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite2818210951047239516.adam
/tmp/adamTestMvnFJdRuV3/TempSuite2818210951047239516.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite2818210951047239516.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2818210951047239516.adam/part-00002-c6fdba14-a723-4fd8-84d0-c00240b8cc06-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite2818210951047239516.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/TempSuite2818210951047239516.adam/part-00000-c6fdba14-a723-4fd8-84d0-c00240b8cc06-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite2818210951047239516.adam/.part-00000-c6fdba14-a723-4fd8-84d0-c00240b8cc06-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2818210951047239516.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite2818210951047239516.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2818210951047239516.adam/.part-00001-c6fdba14-a723-4fd8-84d0-c00240b8cc06-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2818210951047239516.adam/.part-00002-c6fdba14-a723-4fd8-84d0-c00240b8cc06-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2818210951047239516.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2818210951047239516.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2818210951047239516.adam/part-00001-c6fdba14-a723-4fd8-84d0-c00240b8cc06-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite2818210951047239516.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/TempSuite3993829068025618807
/tmp/adamTestMvnFJdRuV3/TempSuite344573865046242580
/tmp/adamTestMvnFJdRuV3/unordered.sam4168686403005747852.sam
/tmp/adamTestMvnFJdRuV3/TempSuite2090311645682966931.adam
/tmp/adamTestMvnFJdRuV3/TempSuite2090311645682966931.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite2090311645682966931.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2090311645682966931.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2090311645682966931.adam/.part-00000-c1d9c5ab-c737-4aca-84ff-7962463e5b4b-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2090311645682966931.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite2090311645682966931.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2090311645682966931.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/TempSuite2090311645682966931.adam/part-00000-c1d9c5ab-c737-4aca-84ff-7962463e5b4b-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite2090311645682966931.adam/.part-00002-c1d9c5ab-c737-4aca-84ff-7962463e5b4b-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2090311645682966931.adam/.part-00001-c1d9c5ab-c737-4aca-84ff-7962463e5b4b-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2090311645682966931.adam/part-00001-c1d9c5ab-c737-4aca-84ff-7962463e5b4b-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite2090311645682966931.adam/part-00002-c1d9c5ab-c737-4aca-84ff-7962463e5b4b-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite2238742355297925261.adam
/tmp/adamTestMvnFJdRuV3/TempSuite2238742355297925261.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite2238742355297925261.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2238742355297925261.adam/part-00001-c418ba04-00e6-409b-a6b1-b9e37c8309bf-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite2238742355297925261.adam/.part-00000-c418ba04-00e6-409b-a6b1-b9e37c8309bf-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2238742355297925261.adam/part-00000-c418ba04-00e6-409b-a6b1-b9e37c8309bf-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite2238742355297925261.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite2238742355297925261.adam/.part-00002-c418ba04-00e6-409b-a6b1-b9e37c8309bf-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2238742355297925261.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2238742355297925261.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2238742355297925261.adam/.part-00001-c418ba04-00e6-409b-a6b1-b9e37c8309bf-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2238742355297925261.adam/part-00002-c418ba04-00e6-409b-a6b1-b9e37c8309bf-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite2238742355297925261.adam/_header
/tmp/adamTestMvnFJdRuV3/ordered.sam8552907633599939993.sam
/tmp/adamTestMvnFJdRuV3/TempSuite3996304178397460440
/tmp/adamTestMvnFJdRuV3/bqsr14299491338235191475
/tmp/adamTestMvnFJdRuV3/bqsr14299491338235191475/bqsr1.bam
/tmp/adamTestMvnFJdRuV3/bqsr14299491338235191475/.bqsr1.bam.crc
/tmp/adamTestMvnFJdRuV3/1099634867672305105
/tmp/adamTestMvnFJdRuV3/1099634867672305105/genotypes.adam
/tmp/adamTestMvnFJdRuV3/1099634867672305105/genotypes.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/1099634867672305105/genotypes.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/1099634867672305105/genotypes.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/1099634867672305105/genotypes.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/1099634867672305105/genotypes.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/1099634867672305105/genotypes.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/1099634867672305105/genotypes.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/1099634867672305105/genotypes.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/1099634867672305105/genotypes.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/1099634867672305105/genotypes.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/1099634867672305105/genotypes.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/1099634867672305105/genotypes.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/1099634867672305105/genotypes.adam/_metadata
/tmp/adamTestMvnFJdRuV3/1099634867672305105/genotypes.adam/_header
/tmp/adamTestMvnFJdRuV3/TempSuite3099133800425087938.sam
/tmp/adamTestMvnFJdRuV3/1599678964879-0
/tmp/adamTestMvnFJdRuV3/1599678964879-0/bqsr1-r1.fq
/tmp/adamTestMvnFJdRuV3/1599678964879-0/bqsr1-r1.fq/_SUCCESS
/tmp/adamTestMvnFJdRuV3/1599678964879-0/bqsr1-r1.fq/part-00000
/tmp/adamTestMvnFJdRuV3/1599678964879-0/bqsr1-r1.fq/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/1599678964879-0/bqsr1-r1.fq/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/1599678964879-0/bqsr1-r2.fq
/tmp/adamTestMvnFJdRuV3/1599678964879-0/bqsr1-r2.fq/_SUCCESS
/tmp/adamTestMvnFJdRuV3/1599678964879-0/bqsr1-r2.fq/part-00000
/tmp/adamTestMvnFJdRuV3/1599678964879-0/bqsr1-r2.fq/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/1599678964879-0/bqsr1-r2.fq/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite2301750122566095190
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite2998631976415424655
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite2430075091143365327.fasta
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite2430075091143365327.fasta/_SUCCESS
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite2430075091143365327.fasta/part-00001
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite2430075091143365327.fasta/.part-00003.crc
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite2430075091143365327.fasta/part-00000
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite2430075091143365327.fasta/part-00003
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite2430075091143365327.fasta/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite2430075091143365327.fasta/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite2430075091143365327.fasta/part-00002
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite2430075091143365327.fasta/.part-00002.crc
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite2430075091143365327.fasta/.part-00001.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1866973162732222274
/tmp/adamTestMvnFJdRuV3/TempSuite2125905361635884164
/tmp/adamTestMvnFJdRuV3/TempSuite7269002114297436062
/tmp/adamTestMvnFJdRuV3/TempSuite5369373140570162141.adam
/tmp/adamTestMvnFJdRuV3/TempSuite5369373140570162141.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite5369373140570162141.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5369373140570162141.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5369373140570162141.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite5369373140570162141.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5369373140570162141.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite5369373140570162141.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5369373140570162141.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite5369373140570162141.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5369373140570162141.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5369373140570162141.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5369373140570162141.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/TempSuite5369373140570162141.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite5369373140570162141.adam/_header
/tmp/adamTestMvnFJdRuV3/small.sam3563705903764368291.sam
/tmp/adamTestMvnFJdRuV3/TempSuite5460384418370997242
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite2974891778639212389.gff3
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite2974891778639212389.gff3/_SUCCESS
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite2974891778639212389.gff3/part-00001
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite2974891778639212389.gff3/.part-00003.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite2974891778639212389.gff3/part-00000
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite2974891778639212389.gff3/part-00003
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite2974891778639212389.gff3/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite2974891778639212389.gff3/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite2974891778639212389.gff3/part-00002
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite2974891778639212389.gff3/.part-00002.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite2974891778639212389.gff3/.part-00001.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2499036699904384666.bed
/tmp/adamTestMvnFJdRuV3/TempSuite2499036699904384666.bed/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite2499036699904384666.bed/part-00000
/tmp/adamTestMvnFJdRuV3/TempSuite2499036699904384666.bed/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2499036699904384666.bed/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite8645814257680332110.interval_list
/tmp/adamTestMvnFJdRuV3/TempSuite3802174255388843270.adam
/tmp/adamTestMvnFJdRuV3/TempSuite3802174255388843270.adam/part-00001-bf663126-ebf5-4a56-b986-569a6c8797c4-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite3802174255388843270.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite3802174255388843270.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3802174255388843270.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3802174255388843270.adam/part-00002-bf663126-ebf5-4a56-b986-569a6c8797c4-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite3802174255388843270.adam/.part-00001-bf663126-ebf5-4a56-b986-569a6c8797c4-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3802174255388843270.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite3802174255388843270.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3802174255388843270.adam/.part-00000-bf663126-ebf5-4a56-b986-569a6c8797c4-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3802174255388843270.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3802174255388843270.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/TempSuite3802174255388843270.adam/.part-00002-bf663126-ebf5-4a56-b986-569a6c8797c4-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3802174255388843270.adam/part-00000-bf663126-ebf5-4a56-b986-569a6c8797c4-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite3802174255388843270.adam/_header
/tmp/adamTestMvnFJdRuV3/TempSuite5045588269263930604
/tmp/adamTestMvnFJdRuV3/TempSuite4576594741796678972.adam
/tmp/adamTestMvnFJdRuV3/TempSuite4576594741796678972.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite4576594741796678972.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4576594741796678972.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite4576594741796678972.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/TempSuite4576594741796678972.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4576594741796678972.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite4576594741796678972.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4576594741796678972.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4576594741796678972.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite4576594741796678972.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4576594741796678972.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4576594741796678972.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4576594741796678972.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite4576594741796678972.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/TempSuite8353225936647295933.adam
/tmp/adamTestMvnFJdRuV3/TempSuite8353225936647295933.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite8353225936647295933.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8353225936647295933.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite8353225936647295933.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/TempSuite8353225936647295933.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8353225936647295933.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite8353225936647295933.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8353225936647295933.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8353225936647295933.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite8353225936647295933.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8353225936647295933.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8353225936647295933.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8353225936647295933.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite8353225936647295933.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/TempSuite6375762109368032305
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite8645814257680332110
/tmp/adamTestMvnFJdRuV3/TempSuite3424691423213119504
/tmp/adamTestMvnFJdRuV3/trinity.fa5152350372399611496.fa
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite3019207562745902715.adam
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite3019207562745902715.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite3019207562745902715.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite3019207562745902715.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite3019207562745902715.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite3019207562745902715.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite3019207562745902715.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite3019207562745902715.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite3019207562745902715.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite3019207562745902715.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite3019207562745902715.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite3019207562745902715.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite3019207562745902715.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite3019207562745902715.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite3019207562745902715.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite3019207562745902715.adam/_metadata
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite3019207562745902715.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite3817783677841565306
/tmp/adamTestMvnFJdRuV3/TempSuite5524922072554715177
/tmp/adamTestMvnFJdRuV3/TempSuite8640953464408630661
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite831934553068787490
/tmp/adamTestMvnFJdRuV3/TempSuite5252486144343946325
/tmp/adamTestMvnFJdRuV3/javaAC7837652323106504180
/tmp/adamTestMvnFJdRuV3/javaAC7837652323106504180/testRdd.fragment.adam
/tmp/adamTestMvnFJdRuV3/javaAC7837652323106504180/testRdd.fragment.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/javaAC7837652323106504180/testRdd.fragment.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/javaAC7837652323106504180/testRdd.fragment.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/javaAC7837652323106504180/testRdd.fragment.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/javaAC7837652323106504180/testRdd.fragment.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/javaAC7837652323106504180/testRdd.fragment.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/javaAC7837652323106504180/testRdd.fragment.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/javaAC7837652323106504180/testRdd.fragment.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/javaAC7837652323106504180/testRdd.fragment.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/javaAC7837652323106504180/testRdd.fragment.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/javaAC7837652323106504180/testRdd.fragment.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/javaAC7837652323106504180/testRdd.fragment.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/javaAC7837652323106504180/testRdd.fragment.adam/_metadata
/tmp/adamTestMvnFJdRuV3/javaAC7837652323106504180/testRdd.fragment.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/TempSuite7020928097668492395
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite6901779504999148526
/tmp/adamTestMvnFJdRuV3/ordered.sam3055293200530138534.sam
/tmp/adamTestMvnFJdRuV3/TempSuite5104641671291603324.bed
/tmp/adamTestMvnFJdRuV3/TempSuite5104641671291603324.bed/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite5104641671291603324.bed/part-00000
/tmp/adamTestMvnFJdRuV3/TempSuite5104641671291603324.bed/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5104641671291603324.bed/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1275962507877464295.adam
/tmp/adamTestMvnFJdRuV3/TempSuite1275962507877464295.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite1275962507877464295.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1275962507877464295.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite1275962507877464295.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/TempSuite1275962507877464295.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1275962507877464295.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite1275962507877464295.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1275962507877464295.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1275962507877464295.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite1275962507877464295.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1275962507877464295.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1275962507877464295.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1275962507877464295.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite1275962507877464295.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/TempSuite7309496558434219156.adam
/tmp/adamTestMvnFJdRuV3/TempSuite7309496558434219156.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite7309496558434219156.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7309496558434219156.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite7309496558434219156.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7309496558434219156.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite7309496558434219156.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7309496558434219156.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite7309496558434219156.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7309496558434219156.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7309496558434219156.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7309496558434219156.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite7309496558434219156.adam/_header
/tmp/adamTestMvnFJdRuV3/.SliceDatasetSuite1462549401947816734.fasta.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2238742355297925261
/tmp/adamTestMvnFJdRuV3/TempSuite5774861967665453273.adam
/tmp/adamTestMvnFJdRuV3/TempSuite5774861967665453273.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite5774861967665453273.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5774861967665453273.adam/.part-00000-cde9a0a7-846c-45de-89ae-6e1b0d49fea5-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5774861967665453273.adam/part-00000-cde9a0a7-846c-45de-89ae-6e1b0d49fea5-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite5774861967665453273.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite5774861967665453273.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5774861967665453273.adam/.part-00001-cde9a0a7-846c-45de-89ae-6e1b0d49fea5-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5774861967665453273.adam/part-00002-cde9a0a7-846c-45de-89ae-6e1b0d49fea5-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite5774861967665453273.adam/part-00001-cde9a0a7-846c-45de-89ae-6e1b0d49fea5-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite5774861967665453273.adam/.part-00002-cde9a0a7-846c-45de-89ae-6e1b0d49fea5-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite2438444251895632749
/tmp/adamTestMvnFJdRuV3/TempSuite4285448702851294593.fa
/tmp/adamTestMvnFJdRuV3/TempSuite4285448702851294593.fa/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite4285448702851294593.fa/part-00000
/tmp/adamTestMvnFJdRuV3/TempSuite4285448702851294593.fa/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4285448702851294593.fa/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3087921727406067912.narrowPeak
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3087921727406067912.narrowPeak/_SUCCESS
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3087921727406067912.narrowPeak/part-00001
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3087921727406067912.narrowPeak/.part-00003.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3087921727406067912.narrowPeak/part-00000
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3087921727406067912.narrowPeak/part-00003
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3087921727406067912.narrowPeak/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3087921727406067912.narrowPeak/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3087921727406067912.narrowPeak/part-00002
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3087921727406067912.narrowPeak/.part-00002.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3087921727406067912.narrowPeak/.part-00001.crc
/tmp/adamTestMvnFJdRuV3/TempSuite455653161106435022
/tmp/adamTestMvnFJdRuV3/TempSuite6031418639943034799.adam
/tmp/adamTestMvnFJdRuV3/TempSuite6031418639943034799.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite6031418639943034799.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6031418639943034799.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/TempSuite6031418639943034799.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite6031418639943034799.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6031418639943034799.adam/.part-00000-6984b3f6-2b5d-4e27-a9a2-959133f5a410-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6031418639943034799.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6031418639943034799.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6031418639943034799.adam/part-00000-6984b3f6-2b5d-4e27-a9a2-959133f5a410-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite6031418639943034799.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/TempSuite2410483571445211440.adam
/tmp/adamTestMvnFJdRuV3/TempSuite2410483571445211440.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite2410483571445211440.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2410483571445211440.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/TempSuite2410483571445211440.adam/.part-00001-d03dd471-5887-4218-bbca-3427dad48e41-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2410483571445211440.adam/part-00002-d03dd471-5887-4218-bbca-3427dad48e41-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite2410483571445211440.adam/.part-00000-d03dd471-5887-4218-bbca-3427dad48e41-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2410483571445211440.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite2410483571445211440.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2410483571445211440.adam/part-00000-d03dd471-5887-4218-bbca-3427dad48e41-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite2410483571445211440.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2410483571445211440.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2410483571445211440.adam/.part-00002-d03dd471-5887-4218-bbca-3427dad48e41-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2410483571445211440.adam/part-00001-d03dd471-5887-4218-bbca-3427dad48e41-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite2410483571445211440.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/TempSuite5649583735704960004.fq
/tmp/adamTestMvnFJdRuV3/TempSuite5649583735704960004.fq/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite5649583735704960004.fq/part-00000
/tmp/adamTestMvnFJdRuV3/TempSuite5649583735704960004.fq/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5649583735704960004.fq/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite431917955960544991
/tmp/adamTestMvnFJdRuV3/TempSuite4663189623412470613
/tmp/adamTestMvnFJdRuV3/TempSuite7869628268550359667
/tmp/adamTestMvnFJdRuV3/TempSuite7402432711149864255
/tmp/adamTestMvnFJdRuV3/5737727465930619111
/tmp/adamTestMvnFJdRuV3/5737727465930619111/.tag.sam.crc
/tmp/adamTestMvnFJdRuV3/5737727465930619111/tag.sam
/tmp/adamTestMvnFJdRuV3/javaAC1690814098197582126
/tmp/adamTestMvnFJdRuV3/javaAC1690814098197582126/testRdd.coverage.adam
/tmp/adamTestMvnFJdRuV3/javaAC1690814098197582126/testRdd.coverage.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/javaAC1690814098197582126/testRdd.coverage.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/javaAC1690814098197582126/testRdd.coverage.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/javaAC1690814098197582126/testRdd.coverage.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/javaAC1690814098197582126/testRdd.coverage.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/javaAC1690814098197582126/testRdd.coverage.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnFJdRuV3/javaAC1690814098197582126/testRdd.coverage.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/javaAC1690814098197582126/testRdd.coverage.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/javaAC1690814098197582126/testRdd.coverage.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/javaAC1690814098197582126/testRdd.coverage.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/javaAC1690814098197582126/testRdd.coverage.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnFJdRuV3/javaAC1690814098197582126/testRdd.coverage.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/javaAC1690814098197582126/testRdd.coverage.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/javaAC1690814098197582126/testRdd.coverage.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/javaAC1690814098197582126/testRdd.coverage.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/javaAC1690814098197582126/testRdd.coverage.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/javaAC1690814098197582126/testRdd.coverage.adam/_metadata
/tmp/adamTestMvnFJdRuV3/javaAC1690814098197582126/testRdd.coverage.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite8385211215246554403
/tmp/adamTestMvnFJdRuV3/TempSuite1963526516627052444.adam
/tmp/adamTestMvnFJdRuV3/TempSuite1963526516627052444.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite1963526516627052444.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1963526516627052444.adam/part-00000-1b1507a2-3fe9-4a2f-ab60-19eed919cedf-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite1963526516627052444.adam/.part-00002-1b1507a2-3fe9-4a2f-ab60-19eed919cedf-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1963526516627052444.adam/.part-00001-1b1507a2-3fe9-4a2f-ab60-19eed919cedf-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1963526516627052444.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite1963526516627052444.adam/.part-00000-1b1507a2-3fe9-4a2f-ab60-19eed919cedf-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1963526516627052444.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1963526516627052444.adam/part-00001-1b1507a2-3fe9-4a2f-ab60-19eed919cedf-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite1963526516627052444.adam/part-00002-1b1507a2-3fe9-4a2f-ab60-19eed919cedf-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/unordered.sam6144882692003084193.sam
/tmp/adamTestMvnFJdRuV3/TempSuite6013259784327954131.adam
/tmp/adamTestMvnFJdRuV3/TempSuite6013259784327954131.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite6013259784327954131.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6013259784327954131.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite6013259784327954131.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/TempSuite6013259784327954131.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6013259784327954131.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite6013259784327954131.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6013259784327954131.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6013259784327954131.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite6013259784327954131.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6013259784327954131.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6013259784327954131.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6013259784327954131.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite6013259784327954131.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/5574818173376441888
/tmp/adamTestMvnFJdRuV3/5574818173376441888/predicate.2.adam
/tmp/adamTestMvnFJdRuV3/5574818173376441888/predicate.2.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/5574818173376441888/predicate.2.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/5574818173376441888/predicate.2.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/5574818173376441888/predicate.2.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/5574818173376441888/predicate.2.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/5574818173376441888/predicate.2.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/5574818173376441888/predicate.2.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/5574818173376441888/predicate.2.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/5574818173376441888/predicate.2.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/5574818173376441888/predicate.2.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/5574818173376441888/predicate.2.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/5574818173376441888/predicate.2.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/5574818173376441888/predicate.2.adam/_metadata
/tmp/adamTestMvnFJdRuV3/5574818173376441888/predicate.2.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/TempSuite3855294546423245878
/tmp/adamTestMvnFJdRuV3/TempSuite27212177266036391_1.fq
/tmp/adamTestMvnFJdRuV3/TempSuite27212177266036391_1.fq/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite27212177266036391_1.fq/part-00000
/tmp/adamTestMvnFJdRuV3/TempSuite27212177266036391_1.fq/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/TempSuite27212177266036391_1.fq/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite1236535223233106536.gff3
/tmp/adamTestMvnFJdRuV3/TempSuite8591517050477293517.sam
/tmp/adamTestMvnFJdRuV3/TempSuite8591517050477293517.sam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite8591517050477293517.sam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8591517050477293517.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8591517050477293517.sam/part-r-00000.sam
/tmp/adamTestMvnFJdRuV3/4516178306856917226
/tmp/adamTestMvnFJdRuV3/4516178306856917226/predicate.3.adam
/tmp/adamTestMvnFJdRuV3/4516178306856917226/predicate.3.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/4516178306856917226/predicate.3.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/4516178306856917226/predicate.3.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/4516178306856917226/predicate.3.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/4516178306856917226/predicate.3.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/4516178306856917226/predicate.3.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/4516178306856917226/predicate.3.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/4516178306856917226/predicate.3.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/4516178306856917226/predicate.3.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/4516178306856917226/predicate.3.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/4516178306856917226/predicate.3.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/4516178306856917226/predicate.3.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/4516178306856917226/predicate.3.adam/_metadata
/tmp/adamTestMvnFJdRuV3/4516178306856917226/predicate.3.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/.TempSuite1706101604655404031.sam.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2885334710757035763.adam
/tmp/adamTestMvnFJdRuV3/TempSuite2885334710757035763.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite2885334710757035763.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2885334710757035763.adam/referenceName=1
/tmp/adamTestMvnFJdRuV3/TempSuite2885334710757035763.adam/referenceName=1/positionBin=169
/tmp/adamTestMvnFJdRuV3/TempSuite2885334710757035763.adam/referenceName=1/positionBin=169/part-00001-759bd11d-ccd4-499d-b7a0-d27b3f7df7b5.c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite2885334710757035763.adam/referenceName=1/positionBin=169/.part-00001-759bd11d-ccd4-499d-b7a0-d27b3f7df7b5.c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2885334710757035763.adam/referenceName=1/positionBin=14
/tmp/adamTestMvnFJdRuV3/TempSuite2885334710757035763.adam/referenceName=1/positionBin=14/.part-00000-759bd11d-ccd4-499d-b7a0-d27b3f7df7b5.c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2885334710757035763.adam/referenceName=1/positionBin=14/part-00000-759bd11d-ccd4-499d-b7a0-d27b3f7df7b5.c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite2885334710757035763.adam/referenceName=1/positionBin=240
/tmp/adamTestMvnFJdRuV3/TempSuite2885334710757035763.adam/referenceName=1/positionBin=240/part-00002-759bd11d-ccd4-499d-b7a0-d27b3f7df7b5.c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite2885334710757035763.adam/referenceName=1/positionBin=240/.part-00002-759bd11d-ccd4-499d-b7a0-d27b3f7df7b5.c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2885334710757035763.adam/referenceName=1/positionBin=0
/tmp/adamTestMvnFJdRuV3/TempSuite2885334710757035763.adam/referenceName=1/positionBin=0/.part-00000-759bd11d-ccd4-499d-b7a0-d27b3f7df7b5.c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2885334710757035763.adam/referenceName=1/positionBin=0/part-00000-759bd11d-ccd4-499d-b7a0-d27b3f7df7b5.c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite2885334710757035763.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2885334710757035763.adam/_partitionedByStartPos
/tmp/adamTestMvnFJdRuV3/TempSuite2885334710757035763.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite2885334710757035763.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2885334710757035763.adam/._partitionedByStartPos.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2885334710757035763.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/TempSuite5154415206283400108.bed
/tmp/adamTestMvnFJdRuV3/TempSuite5154415206283400108.bed/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite5154415206283400108.bed/part-00000
/tmp/adamTestMvnFJdRuV3/TempSuite5154415206283400108.bed/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5154415206283400108.bed/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite6808270807039396861.adam
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite6808270807039396861.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite6808270807039396861.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite6808270807039396861.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite6808270807039396861.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite6808270807039396861.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite6808270807039396861.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite6808270807039396861.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite6808270807039396861.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite6808270807039396861.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite6808270807039396861.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite6808270807039396861.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite6808270807039396861.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite6808270807039396861.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite6808270807039396861.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite6808270807039396861.adam/_metadata
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite6808270807039396861.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite7419557363554514653.adam
/tmp/adamTestMvnFJdRuV3/TempSuite7419557363554514653.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite7419557363554514653.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7419557363554514653.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite7419557363554514653.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7419557363554514653.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite7419557363554514653.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7419557363554514653.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite7419557363554514653.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7419557363554514653.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7419557363554514653.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7419557363554514653.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite7419557363554514653.adam/_header
/tmp/adamTestMvnFJdRuV3/TempSuite8374998219805993971.fa
/tmp/adamTestMvnFJdRuV3/TempSuite8374998219805993971.fa/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite8374998219805993971.fa/part-00000
/tmp/adamTestMvnFJdRuV3/TempSuite8374998219805993971.fa/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8374998219805993971.fa/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5864808168676690110
/tmp/adamTestMvnFJdRuV3/TempSuite7254905270748521182
/tmp/adamTestMvnFJdRuV3/TempSuite4238620409268305064
/tmp/adamTestMvnFJdRuV3/reads1355535778238263064
/tmp/adamTestMvnFJdRuV3/reads1355535778238263064/reads2.fq
/tmp/adamTestMvnFJdRuV3/reads1355535778238263064/reads2.fq/_SUCCESS
/tmp/adamTestMvnFJdRuV3/reads1355535778238263064/reads2.fq/part-00000
/tmp/adamTestMvnFJdRuV3/reads1355535778238263064/reads2.fq/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/reads1355535778238263064/reads2.fq/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/reads1355535778238263064/reads1.fq
/tmp/adamTestMvnFJdRuV3/reads1355535778238263064/reads1.fq/_SUCCESS
/tmp/adamTestMvnFJdRuV3/reads1355535778238263064/reads1.fq/part-00000
/tmp/adamTestMvnFJdRuV3/reads1355535778238263064/reads1.fq/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/reads1355535778238263064/reads1.fq/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4063634326602876162
/tmp/adamTestMvnFJdRuV3/TempSuite59922063332210890
/tmp/adamTestMvnFJdRuV3/TempSuite1730783505221017109.adam
/tmp/adamTestMvnFJdRuV3/TempSuite1730783505221017109.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite1730783505221017109.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1730783505221017109.adam/referenceName=1
/tmp/adamTestMvnFJdRuV3/TempSuite1730783505221017109.adam/referenceName=1/positionBin=26
/tmp/adamTestMvnFJdRuV3/TempSuite1730783505221017109.adam/referenceName=1/positionBin=26/part-00000-2d69d706-5be1-4686-9e4d-95355189b0af.c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite1730783505221017109.adam/referenceName=1/positionBin=26/.part-00000-2d69d706-5be1-4686-9e4d-95355189b0af.c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1730783505221017109.adam/referenceName=1/positionBin=240
/tmp/adamTestMvnFJdRuV3/TempSuite1730783505221017109.adam/referenceName=1/positionBin=240/part-00000-2d69d706-5be1-4686-9e4d-95355189b0af.c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite1730783505221017109.adam/referenceName=1/positionBin=240/.part-00000-2d69d706-5be1-4686-9e4d-95355189b0af.c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1730783505221017109.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/TempSuite1730783505221017109.adam/_partitionedByStartPos
/tmp/adamTestMvnFJdRuV3/TempSuite1730783505221017109.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite1730783505221017109.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1730783505221017109.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1730783505221017109.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1730783505221017109.adam/._partitionedByStartPos.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1730783505221017109.adam/referenceName=2
/tmp/adamTestMvnFJdRuV3/TempSuite1730783505221017109.adam/referenceName=2/positionBin=189
/tmp/adamTestMvnFJdRuV3/TempSuite1730783505221017109.adam/referenceName=2/positionBin=189/part-00000-2d69d706-5be1-4686-9e4d-95355189b0af.c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite1730783505221017109.adam/referenceName=2/positionBin=189/.part-00000-2d69d706-5be1-4686-9e4d-95355189b0af.c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1730783505221017109.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/TempSuite5101114386559993108.adam
/tmp/adamTestMvnFJdRuV3/TempSuite5101114386559993108.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite5101114386559993108.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5101114386559993108.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5101114386559993108.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite5101114386559993108.adam/part-00000-74a9fa63-8890-4472-b52e-932a67e8e33e-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite5101114386559993108.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5101114386559993108.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5101114386559993108.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/TempSuite5101114386559993108.adam/_header
/tmp/adamTestMvnFJdRuV3/TempSuite5101114386559993108.adam/.part-00000-74a9fa63-8890-4472-b52e-932a67e8e33e-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/javaAC2456675567867844603
/tmp/adamTestMvnFJdRuV3/javaAC2456675567867844603/testRdd.read.adam
/tmp/adamTestMvnFJdRuV3/javaAC2456675567867844603/testRdd.read.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/javaAC2456675567867844603/testRdd.read.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/javaAC2456675567867844603/testRdd.read.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/javaAC2456675567867844603/testRdd.read.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/javaAC2456675567867844603/testRdd.read.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/javaAC2456675567867844603/testRdd.read.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/javaAC2456675567867844603/testRdd.read.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/javaAC2456675567867844603/testRdd.read.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/javaAC2456675567867844603/testRdd.read.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/javaAC2456675567867844603/testRdd.read.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/javaAC2456675567867844603/testRdd.read.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/javaAC2456675567867844603/testRdd.read.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/javaAC2456675567867844603/testRdd.read.adam/_metadata
/tmp/adamTestMvnFJdRuV3/javaAC2456675567867844603/testRdd.read.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite6806100472807492189
/tmp/adamTestMvnFJdRuV3/TempSuite8591517050477293517
/tmp/adamTestMvnFJdRuV3/TempSuite988004705622838003.adam
/tmp/adamTestMvnFJdRuV3/TempSuite988004705622838003.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite988004705622838003.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite988004705622838003.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/TempSuite988004705622838003.adam/.part-00001-e06393fa-3b4b-46d4-b8c3-654df1a8926e-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite988004705622838003.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite988004705622838003.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite988004705622838003.adam/part-00000-e06393fa-3b4b-46d4-b8c3-654df1a8926e-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite988004705622838003.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite988004705622838003.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite988004705622838003.adam/.part-00000-e06393fa-3b4b-46d4-b8c3-654df1a8926e-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite988004705622838003.adam/part-00001-e06393fa-3b4b-46d4-b8c3-654df1a8926e-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite988004705622838003.adam/.part-00002-e06393fa-3b4b-46d4-b8c3-654df1a8926e-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite988004705622838003.adam/part-00002-e06393fa-3b4b-46d4-b8c3-654df1a8926e-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite988004705622838003.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/TempSuite2708930949043491715
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite6235353987759650850
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite7969982755090076974.fasta
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite7969982755090076974.fasta/_SUCCESS
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite7969982755090076974.fasta/part-00001
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite7969982755090076974.fasta/.part-00003.crc
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite7969982755090076974.fasta/part-00000
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite7969982755090076974.fasta/part-00003
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite7969982755090076974.fasta/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite7969982755090076974.fasta/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite7969982755090076974.fasta/part-00002
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite7969982755090076974.fasta/.part-00002.crc
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite7969982755090076974.fasta/.part-00001.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6627012339939122544.adam
/tmp/adamTestMvnFJdRuV3/TempSuite6627012339939122544.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite6627012339939122544.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6627012339939122544.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6627012339939122544.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite6627012339939122544.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6627012339939122544.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite6627012339939122544.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6627012339939122544.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite6627012339939122544.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6627012339939122544.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6627012339939122544.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite6627012339939122544.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6627012339939122544.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite6627012339939122544.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6627012339939122544.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6627012339939122544.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/TempSuite6627012339939122544.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite6627012339939122544.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite59922063332210890.adam
/tmp/adamTestMvnFJdRuV3/TempSuite59922063332210890.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite59922063332210890.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite59922063332210890.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite59922063332210890.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite59922063332210890.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite59922063332210890.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite59922063332210890.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite59922063332210890.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite59922063332210890.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite59922063332210890.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite59922063332210890.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite59922063332210890.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite59922063332210890.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite59922063332210890.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite59922063332210890.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite59922063332210890.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/TempSuite59922063332210890.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite59922063332210890.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite6008326690731024174
/tmp/adamTestMvnFJdRuV3/.TempSuite901070796081771603.sam.crc
/tmp/adamTestMvnFJdRuV3/1599678999993-0
/tmp/adamTestMvnFJdRuV3/1599678999993-0/bqsr1-r1.fq
/tmp/adamTestMvnFJdRuV3/1599678999993-0/bqsr1-r1.fq/_SUCCESS
/tmp/adamTestMvnFJdRuV3/1599678999993-0/bqsr1-r1.fq/part-00000
/tmp/adamTestMvnFJdRuV3/1599678999993-0/bqsr1-r1.fq/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/1599678999993-0/bqsr1-r1.fq/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/1599678999993-0/bqsr1-r2.fq
/tmp/adamTestMvnFJdRuV3/1599678999993-0/bqsr1-r2.fq/_SUCCESS
/tmp/adamTestMvnFJdRuV3/1599678999993-0/bqsr1-r2.fq/part-00000
/tmp/adamTestMvnFJdRuV3/1599678999993-0/bqsr1-r2.fq/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/1599678999993-0/bqsr1-r2.fq/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/reads6086639732210576699
/tmp/adamTestMvnFJdRuV3/reads6086639732210576699/reads2.fq
/tmp/adamTestMvnFJdRuV3/reads6086639732210576699/reads2.fq/_SUCCESS
/tmp/adamTestMvnFJdRuV3/reads6086639732210576699/reads2.fq/part-00000
/tmp/adamTestMvnFJdRuV3/reads6086639732210576699/reads2.fq/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/reads6086639732210576699/reads2.fq/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/reads6086639732210576699/reads1.fq
/tmp/adamTestMvnFJdRuV3/reads6086639732210576699/reads1.fq/_SUCCESS
/tmp/adamTestMvnFJdRuV3/reads6086639732210576699/reads1.fq/part-00000
/tmp/adamTestMvnFJdRuV3/reads6086639732210576699/reads1.fq/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/reads6086639732210576699/reads1.fq/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2536085511665573315.bed
/tmp/adamTestMvnFJdRuV3/TempSuite2536085511665573315.bed/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite2536085511665573315.bed/part-00000
/tmp/adamTestMvnFJdRuV3/TempSuite2536085511665573315.bed/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2536085511665573315.bed/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5916276100165321702.adam
/tmp/adamTestMvnFJdRuV3/TempSuite5916276100165321702.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite5916276100165321702.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5916276100165321702.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite5916276100165321702.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/TempSuite5916276100165321702.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5916276100165321702.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite5916276100165321702.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5916276100165321702.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5916276100165321702.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite5916276100165321702.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5916276100165321702.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5916276100165321702.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5916276100165321702.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite5916276100165321702.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/TempSuite8149265746025690973.adam
/tmp/adamTestMvnFJdRuV3/TempSuite8149265746025690973.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite8149265746025690973.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8149265746025690973.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite8149265746025690973.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8149265746025690973.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite8149265746025690973.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8149265746025690973.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite8149265746025690973.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8149265746025690973.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8149265746025690973.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite8149265746025690973.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8149265746025690973.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite8149265746025690973.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8149265746025690973.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8149265746025690973.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite8149265746025690973.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite3200195172807956681
/tmp/adamTestMvnFJdRuV3/javaAC5105429387758681253
/tmp/adamTestMvnFJdRuV3/javaAC5105429387758681253/testRdd.genotype.adam
/tmp/adamTestMvnFJdRuV3/javaAC5105429387758681253/testRdd.genotype.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/javaAC5105429387758681253/testRdd.genotype.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/javaAC5105429387758681253/testRdd.genotype.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/javaAC5105429387758681253/testRdd.genotype.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/javaAC5105429387758681253/testRdd.genotype.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/javaAC5105429387758681253/testRdd.genotype.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/javaAC5105429387758681253/testRdd.genotype.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/javaAC5105429387758681253/testRdd.genotype.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/javaAC5105429387758681253/testRdd.genotype.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/javaAC5105429387758681253/testRdd.genotype.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/javaAC5105429387758681253/testRdd.genotype.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/javaAC5105429387758681253/testRdd.genotype.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/javaAC5105429387758681253/testRdd.genotype.adam/_metadata
/tmp/adamTestMvnFJdRuV3/javaAC5105429387758681253/testRdd.genotype.adam/_header
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite2993848076557962100
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite2993848076557962100.gff3
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite2993848076557962100.gff3/_SUCCESS
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite2993848076557962100.gff3/part-00001
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite2993848076557962100.gff3/.part-00003.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite2993848076557962100.gff3/part-00000
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite2993848076557962100.gff3/part-00003
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite2993848076557962100.gff3/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite2993848076557962100.gff3/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite2993848076557962100.gff3/part-00002
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite2993848076557962100.gff3/.part-00002.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite2993848076557962100.gff3/.part-00001.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4336033094064110226
/tmp/adamTestMvnFJdRuV3/TempSuite6772140507236520536
/tmp/adamTestMvnFJdRuV3/TempSuite8439222997035487044
/tmp/adamTestMvnFJdRuV3/TempSuite3246154496268316559.adam
/tmp/adamTestMvnFJdRuV3/TempSuite3246154496268316559.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite3246154496268316559.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3246154496268316559.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3246154496268316559.adam/.part-00005-939e99ca-b540-4ae9-8fcb-9dc21d30417f-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3246154496268316559.adam/.part-00003-939e99ca-b540-4ae9-8fcb-9dc21d30417f-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3246154496268316559.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite3246154496268316559.adam/part-00000-939e99ca-b540-4ae9-8fcb-9dc21d30417f-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite3246154496268316559.adam/part-00005-939e99ca-b540-4ae9-8fcb-9dc21d30417f-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite3246154496268316559.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3246154496268316559.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/TempSuite3246154496268316559.adam/part-00003-939e99ca-b540-4ae9-8fcb-9dc21d30417f-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite3246154496268316559.adam/.part-00000-939e99ca-b540-4ae9-8fcb-9dc21d30417f-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite7472263847628829234.interval_list
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite7472263847628829234.interval_list/_SUCCESS
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite7472263847628829234.interval_list/part-00001
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite7472263847628829234.interval_list/.part-00003.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite7472263847628829234.interval_list/part-00000
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite7472263847628829234.interval_list/part-00003
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite7472263847628829234.interval_list/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite7472263847628829234.interval_list/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite7472263847628829234.interval_list/part-00002
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite7472263847628829234.interval_list/.part-00002.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite7472263847628829234.interval_list/.part-00001.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7579078304277702063
/tmp/adamTestMvnFJdRuV3/TempSuite99457630214124314.adam
/tmp/adamTestMvnFJdRuV3/TempSuite99457630214124314.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite99457630214124314.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite99457630214124314.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite99457630214124314.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite99457630214124314.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite99457630214124314.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite99457630214124314.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite99457630214124314.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite99457630214124314.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite99457630214124314.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite99457630214124314.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite99457630214124314.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/TempSuite99457630214124314.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite99457630214124314.adam/_header
/tmp/adamTestMvnFJdRuV3/8719844376158180355
/tmp/adamTestMvnFJdRuV3/8719844376158180355/genotypes.adam
/tmp/adamTestMvnFJdRuV3/8719844376158180355/genotypes.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/8719844376158180355/genotypes.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/8719844376158180355/genotypes.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/8719844376158180355/genotypes.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/8719844376158180355/genotypes.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/8719844376158180355/genotypes.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/8719844376158180355/genotypes.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/8719844376158180355/genotypes.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/8719844376158180355/genotypes.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/8719844376158180355/genotypes.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/8719844376158180355/genotypes.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/8719844376158180355/genotypes.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/8719844376158180355/genotypes.adam/_metadata
/tmp/adamTestMvnFJdRuV3/8719844376158180355/genotypes.adam/_header
/tmp/adamTestMvnFJdRuV3/TempSuite1044751477327268057.adam
/tmp/adamTestMvnFJdRuV3/TempSuite1044751477327268057.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite1044751477327268057.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1044751477327268057.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1044751477327268057.adam/part-00000-b2f7c10f-541f-4e02-bb42-f89c6d849590-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite1044751477327268057.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite1044751477327268057.adam/.part-00000-b2f7c10f-541f-4e02-bb42-f89c6d849590-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1044751477327268057.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1044751477327268057.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1044751477327268057.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/TempSuite1044751477327268057.adam/_header
/tmp/adamTestMvnFJdRuV3/TempSuite2823015617056954675.bam
/tmp/adamTestMvnFJdRuV3/TempSuite2823015617056954675.bam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite2823015617056954675.bam/part-r-00000.bam
/tmp/adamTestMvnFJdRuV3/TempSuite2823015617056954675.bam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2823015617056954675.bam/.part-r-00000.bam.crc
/tmp/adamTestMvnFJdRuV3/adam-cli.TransformFeaturesSuite6857039216650035138.adam
/tmp/adamTestMvnFJdRuV3/adam-cli.TransformFeaturesSuite6857039216650035138.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/adam-cli.TransformFeaturesSuite6857039216650035138.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/adam-cli.TransformFeaturesSuite6857039216650035138.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/adam-cli.TransformFeaturesSuite6857039216650035138.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/adam-cli.TransformFeaturesSuite6857039216650035138.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/adam-cli.TransformFeaturesSuite6857039216650035138.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/adam-cli.TransformFeaturesSuite6857039216650035138.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/adam-cli.TransformFeaturesSuite6857039216650035138.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/adam-cli.TransformFeaturesSuite6857039216650035138.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/adam-cli.TransformFeaturesSuite6857039216650035138.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/adam-cli.TransformFeaturesSuite6857039216650035138.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/adam-cli.TransformFeaturesSuite6857039216650035138.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite2210898173167248456
/tmp/adamTestMvnFJdRuV3/TempSuite5916276100165321702
/tmp/adamTestMvnFJdRuV3/TempSuite4157108903467396640
/tmp/adamTestMvnFJdRuV3/javaAC1941144156077728400
/tmp/adamTestMvnFJdRuV3/javaAC1941144156077728400/testRdd.variant.adam
/tmp/adamTestMvnFJdRuV3/javaAC1941144156077728400/testRdd.variant.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/javaAC1941144156077728400/testRdd.variant.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/javaAC1941144156077728400/testRdd.variant.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/javaAC1941144156077728400/testRdd.variant.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/javaAC1941144156077728400/testRdd.variant.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/javaAC1941144156077728400/testRdd.variant.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/javaAC1941144156077728400/testRdd.variant.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/javaAC1941144156077728400/testRdd.variant.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/javaAC1941144156077728400/testRdd.variant.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/javaAC1941144156077728400/testRdd.variant.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/javaAC1941144156077728400/testRdd.variant.adam/_metadata
/tmp/adamTestMvnFJdRuV3/javaAC1941144156077728400/testRdd.variant.adam/_header
/tmp/adamTestMvnFJdRuV3/TempSuite5101114386559993108
/tmp/adamTestMvnFJdRuV3/TempSuite3552148544004177300.adam
/tmp/adamTestMvnFJdRuV3/TempSuite3552148544004177300.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite3552148544004177300.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3552148544004177300.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite3552148544004177300.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3552148544004177300.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite3552148544004177300.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/TempSuite3552148544004177300.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3552148544004177300.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite3552148544004177300.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3552148544004177300.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3552148544004177300.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite3552148544004177300.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3552148544004177300.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3552148544004177300.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite3552148544004177300.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3552148544004177300.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3552148544004177300.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3552148544004177300.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite3552148544004177300.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite3552148544004177300.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/TempSuite2754035481517831227
/tmp/adamTestMvnFJdRuV3/TempSuite4604659501689116201.adam
/tmp/adamTestMvnFJdRuV3/TempSuite4604659501689116201.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite4604659501689116201.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4604659501689116201.adam/part-00000-cce63aa1-6d37-47db-9a23-1b9ee07faa63-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite4604659501689116201.adam/.part-00002-cce63aa1-6d37-47db-9a23-1b9ee07faa63-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4604659501689116201.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite4604659501689116201.adam/part-00001-cce63aa1-6d37-47db-9a23-1b9ee07faa63-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite4604659501689116201.adam/.part-00001-cce63aa1-6d37-47db-9a23-1b9ee07faa63-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4604659501689116201.adam/part-00002-cce63aa1-6d37-47db-9a23-1b9ee07faa63-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite4604659501689116201.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4604659501689116201.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4604659501689116201.adam/.part-00000-cce63aa1-6d37-47db-9a23-1b9ee07faa63-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4604659501689116201.adam/_header
/tmp/adamTestMvnFJdRuV3/TempSuite9164831318383345918
/tmp/adamTestMvnFJdRuV3/TempSuite428617537557198231
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite8151390426839576470
/tmp/adamTestMvnFJdRuV3/1218404220100266616
/tmp/adamTestMvnFJdRuV3/1218404220100266616/variants.adam
/tmp/adamTestMvnFJdRuV3/1218404220100266616/variants.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/1218404220100266616/variants.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/1218404220100266616/variants.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/1218404220100266616/variants.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/1218404220100266616/variants.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/1218404220100266616/variants.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/1218404220100266616/variants.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/1218404220100266616/variants.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/1218404220100266616/variants.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/1218404220100266616/variants.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/1218404220100266616/variants.adam/_metadata
/tmp/adamTestMvnFJdRuV3/1218404220100266616/variants.adam/_header
/tmp/adamTestMvnFJdRuV3/.FeatureDatasetFunctionsSuite5496070870948712938.narrowPeak.crc
/tmp/adamTestMvnFJdRuV3/TempSuite988004705622838003
/tmp/adamTestMvnFJdRuV3/TempSuite1823077896136862755
/tmp/adamTestMvnFJdRuV3/TempSuite5369373140570162141
/tmp/adamTestMvnFJdRuV3/TempSuite2941399631810390884.bed
/tmp/adamTestMvnFJdRuV3/TempSuite2941399631810390884.bed/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite2941399631810390884.bed/part-00000
/tmp/adamTestMvnFJdRuV3/TempSuite2941399631810390884.bed/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2941399631810390884.bed/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6157362027721170776
/tmp/adamTestMvnFJdRuV3/TempSuite3994426443441695476.fa
/tmp/adamTestMvnFJdRuV3/TempSuite3994426443441695476.fa/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite3994426443441695476.fa/part-00000
/tmp/adamTestMvnFJdRuV3/TempSuite3994426443441695476.fa/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3994426443441695476.fa/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite189412097155390123_1.fq
/tmp/adamTestMvnFJdRuV3/TempSuite189412097155390123_1.fq/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite189412097155390123_1.fq/part-00000
/tmp/adamTestMvnFJdRuV3/TempSuite189412097155390123_1.fq/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/TempSuite189412097155390123_1.fq/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6542100209467445915.adam
/tmp/adamTestMvnFJdRuV3/TempSuite6542100209467445915.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite6542100209467445915.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6542100209467445915.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6542100209467445915.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite6542100209467445915.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6542100209467445915.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite6542100209467445915.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6542100209467445915.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite6542100209467445915.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6542100209467445915.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6542100209467445915.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite6542100209467445915.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6542100209467445915.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite6542100209467445915.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6542100209467445915.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6542100209467445915.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/TempSuite6542100209467445915.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite6542100209467445915.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite8233925073059069084
/tmp/adamTestMvnFJdRuV3/TempSuite5883486718160203687
/tmp/adamTestMvnFJdRuV3/TempSuite6786895087838329265.adam
/tmp/adamTestMvnFJdRuV3/TempSuite6786895087838329265.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite6786895087838329265.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6786895087838329265.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite6786895087838329265.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6786895087838329265.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite6786895087838329265.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6786895087838329265.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite6786895087838329265.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6786895087838329265.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6786895087838329265.adam/_metadata
/tmp/adamTestMvnFJdRuV3/reads129128955867560969479
/tmp/adamTestMvnFJdRuV3/reads129128955867560969479/reads12.sam
/tmp/adamTestMvnFJdRuV3/reads129128955867560969479/reads12.sam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/reads129128955867560969479/reads12.sam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/reads129128955867560969479/reads12.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnFJdRuV3/reads129128955867560969479/reads12.sam/part-r-00000.sam
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite282655735033106054.interval_list
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite282655735033106054.interval_list/_SUCCESS
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite282655735033106054.interval_list/part-00001
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite282655735033106054.interval_list/.part-00003.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite282655735033106054.interval_list/part-00000
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite282655735033106054.interval_list/part-00003
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite282655735033106054.interval_list/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite282655735033106054.interval_list/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite282655735033106054.interval_list/part-00002
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite282655735033106054.interval_list/.part-00002.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite282655735033106054.interval_list/.part-00001.crc
/tmp/adamTestMvnFJdRuV3/TempSuite88609889629582961.adam
/tmp/adamTestMvnFJdRuV3/TempSuite88609889629582961.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite88609889629582961.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite88609889629582961.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite88609889629582961.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/TempSuite88609889629582961.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite88609889629582961.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite88609889629582961.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite88609889629582961.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite88609889629582961.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite88609889629582961.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite88609889629582961.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite88609889629582961.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite88609889629582961.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite88609889629582961.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/4510618000656922635
/tmp/adamTestMvnFJdRuV3/4510618000656922635/unordered.sam
/tmp/adamTestMvnFJdRuV3/4510618000656922635/.unordered.sam.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2746710577780240150.adam
/tmp/adamTestMvnFJdRuV3/TempSuite2746710577780240150.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite2746710577780240150.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2746710577780240150.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite2746710577780240150.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2746710577780240150.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite2746710577780240150.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2746710577780240150.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite2746710577780240150.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2746710577780240150.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2746710577780240150.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2746710577780240150.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite2746710577780240150.adam/_header
/tmp/adamTestMvnFJdRuV3/TempSuite5186554722303309279.adam
/tmp/adamTestMvnFJdRuV3/TempSuite5186554722303309279.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite5186554722303309279.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5186554722303309279.adam/.part-00000-e2da85e4-95bd-4519-8cf3-b4a50f0c69d6-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5186554722303309279.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/TempSuite5186554722303309279.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite5186554722303309279.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5186554722303309279.adam/part-00000-e2da85e4-95bd-4519-8cf3-b4a50f0c69d6-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite5186554722303309279.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5186554722303309279.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5186554722303309279.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/TempSuite7108467799281501241.adam
/tmp/adamTestMvnFJdRuV3/TempSuite7108467799281501241.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite7108467799281501241.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7108467799281501241.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite7108467799281501241.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7108467799281501241.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite7108467799281501241.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/TempSuite7108467799281501241.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7108467799281501241.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite7108467799281501241.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7108467799281501241.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7108467799281501241.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite7108467799281501241.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7108467799281501241.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7108467799281501241.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite7108467799281501241.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7108467799281501241.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7108467799281501241.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7108467799281501241.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite7108467799281501241.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite7108467799281501241.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/5587275069896151787
/tmp/adamTestMvnFJdRuV3/5587275069896151787/ordered.sam
/tmp/adamTestMvnFJdRuV3/5587275069896151787/.ordered.sam.crc
/tmp/adamTestMvnFJdRuV3/6852442817215919919
/tmp/adamTestMvnFJdRuV3/6852442817215919919/.tag.sam.crc
/tmp/adamTestMvnFJdRuV3/6852442817215919919/tag.sam
/tmp/adamTestMvnFJdRuV3/TempSuite8340905400717743978
/tmp/adamTestMvnFJdRuV3/TempSuite6567829281233532041
/tmp/adamTestMvnFJdRuV3/TempSuite7609910642873562760.adam
/tmp/adamTestMvnFJdRuV3/TempSuite7609910642873562760.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite7609910642873562760.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7609910642873562760.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite7609910642873562760.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7609910642873562760.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite7609910642873562760.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7609910642873562760.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite7609910642873562760.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7609910642873562760.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7609910642873562760.adam/_metadata
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite1537841012162825.gtf
/tmp/adamTestMvnFJdRuV3/TempSuite7774273342488810552
/tmp/adamTestMvnFJdRuV3/TempSuite2267616016608143555
/tmp/adamTestMvnFJdRuV3/TempSuite2944198792304377806.adam
/tmp/adamTestMvnFJdRuV3/TempSuite2944198792304377806.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite2944198792304377806.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2944198792304377806.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2944198792304377806.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite2944198792304377806.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2944198792304377806.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite2944198792304377806.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2944198792304377806.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite2944198792304377806.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2944198792304377806.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2944198792304377806.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2944198792304377806.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/TempSuite2944198792304377806.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite2944198792304377806.adam/_header
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite5894860863063767392
/tmp/adamTestMvnFJdRuV3/TempSuite1319573137098650586
/tmp/adamTestMvnFJdRuV3/TempSuite3393399175615264373.adam
/tmp/adamTestMvnFJdRuV3/TempSuite3393399175615264373.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite3393399175615264373.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3393399175615264373.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite3393399175615264373.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/TempSuite3393399175615264373.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3393399175615264373.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite3393399175615264373.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3393399175615264373.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3393399175615264373.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite3393399175615264373.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3393399175615264373.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3393399175615264373.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3393399175615264373.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite3393399175615264373.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/TempSuite4398935283249326000
/tmp/adamTestMvnFJdRuV3/TempSuite651913573880651442
/tmp/adamTestMvnFJdRuV3/javaAC2850943102558525708
/tmp/adamTestMvnFJdRuV3/javaAC2850943102558525708/testRdd.slices.adam
/tmp/adamTestMvnFJdRuV3/javaAC2850943102558525708/testRdd.slices.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/javaAC2850943102558525708/testRdd.slices.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/javaAC2850943102558525708/testRdd.slices.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/javaAC2850943102558525708/testRdd.slices.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/javaAC2850943102558525708/testRdd.slices.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/javaAC2850943102558525708/testRdd.slices.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/javaAC2850943102558525708/testRdd.slices.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/javaAC2850943102558525708/testRdd.slices.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/javaAC2850943102558525708/testRdd.slices.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/javaAC2850943102558525708/testRdd.slices.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite1325167558862627455
/tmp/adamTestMvnFJdRuV3/sorted.sam7337520937900640588.sam
/tmp/adamTestMvnFJdRuV3/TempSuite578679262854018338.adam
/tmp/adamTestMvnFJdRuV3/TempSuite578679262854018338.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite578679262854018338.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite578679262854018338.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite578679262854018338.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite578679262854018338.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite578679262854018338.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite578679262854018338.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite578679262854018338.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite578679262854018338.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite578679262854018338.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite578679262854018338.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite578679262854018338.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/TempSuite578679262854018338.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite578679262854018338.adam/_header
/tmp/adamTestMvnFJdRuV3/random.vcf8665647118692608759.vcf
/tmp/adamTestMvnFJdRuV3/TempSuite7803948975132062989
/tmp/adamTestMvnFJdRuV3/5479856964729076900
/tmp/adamTestMvnFJdRuV3/5479856964729076900/unordered.adam
/tmp/adamTestMvnFJdRuV3/5479856964729076900/unordered.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/5479856964729076900/unordered.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/5479856964729076900/unordered.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/5479856964729076900/unordered.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/5479856964729076900/unordered.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/5479856964729076900/unordered.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/5479856964729076900/unordered.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/5479856964729076900/unordered.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/5479856964729076900/unordered.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/5479856964729076900/unordered.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/5479856964729076900/unordered.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/5479856964729076900/unordered.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/5479856964729076900/unordered.adam/_metadata
/tmp/adamTestMvnFJdRuV3/5479856964729076900/unordered.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/TempSuite7940218999406506731.sam
/tmp/adamTestMvnFJdRuV3/TempSuite7940218999406506731.sam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite7940218999406506731.sam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7940218999406506731.sam/.part-r-00000.sam.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7940218999406506731.sam/part-r-00000.sam
/tmp/adamTestMvnFJdRuV3/7714744037806383993
/tmp/adamTestMvnFJdRuV3/7714744037806383993/ordered.sam
/tmp/adamTestMvnFJdRuV3/7714744037806383993/.ordered.sam.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite609071620944604855.narrowPeak
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite609071620944604855.narrowPeak/_SUCCESS
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite609071620944604855.narrowPeak/part-00001
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite609071620944604855.narrowPeak/.part-00003.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite609071620944604855.narrowPeak/part-00000
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite609071620944604855.narrowPeak/part-00003
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite609071620944604855.narrowPeak/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite609071620944604855.narrowPeak/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite609071620944604855.narrowPeak/part-00002
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite609071620944604855.narrowPeak/.part-00002.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite609071620944604855.narrowPeak/.part-00001.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite8151390426839576470.gff3
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite8151390426839576470.gff3/_SUCCESS
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite8151390426839576470.gff3/part-00001
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite8151390426839576470.gff3/.part-00003.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite8151390426839576470.gff3/part-00000
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite8151390426839576470.gff3/part-00003
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite8151390426839576470.gff3/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite8151390426839576470.gff3/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite8151390426839576470.gff3/part-00002
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite8151390426839576470.gff3/.part-00002.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite8151390426839576470.gff3/.part-00001.crc
/tmp/adamTestMvnFJdRuV3/.TempSuite3487442720622559608.bam.crc
/tmp/adamTestMvnFJdRuV3/SequenceDatasetSuite1236178471817459378
/tmp/adamTestMvnFJdRuV3/TempSuite3832680705537066455.adam
/tmp/adamTestMvnFJdRuV3/TempSuite3832680705537066455.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite3832680705537066455.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3832680705537066455.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite3832680705537066455.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/TempSuite3832680705537066455.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3832680705537066455.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite3832680705537066455.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3832680705537066455.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3832680705537066455.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite3832680705537066455.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3832680705537066455.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3832680705537066455.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3832680705537066455.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite3832680705537066455.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/TempSuite5002046198378597315
/tmp/adamTestMvnFJdRuV3/javaAC1758528429730125719
/tmp/adamTestMvnFJdRuV3/javaAC1758528429730125719/testRdd.variant.adam
/tmp/adamTestMvnFJdRuV3/javaAC1758528429730125719/testRdd.variant.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/javaAC1758528429730125719/testRdd.variant.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/javaAC1758528429730125719/testRdd.variant.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/javaAC1758528429730125719/testRdd.variant.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/javaAC1758528429730125719/testRdd.variant.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/javaAC1758528429730125719/testRdd.variant.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/javaAC1758528429730125719/testRdd.variant.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/javaAC1758528429730125719/testRdd.variant.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/javaAC1758528429730125719/testRdd.variant.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/javaAC1758528429730125719/testRdd.variant.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/javaAC1758528429730125719/testRdd.variant.adam/_metadata
/tmp/adamTestMvnFJdRuV3/javaAC1758528429730125719/testRdd.variant.adam/_header
/tmp/adamTestMvnFJdRuV3/javaAC4618965007235519913
/tmp/adamTestMvnFJdRuV3/javaAC4618965007235519913/testRdd.fragment.adam
/tmp/adamTestMvnFJdRuV3/javaAC4618965007235519913/testRdd.fragment.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/javaAC4618965007235519913/testRdd.fragment.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/javaAC4618965007235519913/testRdd.fragment.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/javaAC4618965007235519913/testRdd.fragment.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/javaAC4618965007235519913/testRdd.fragment.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/javaAC4618965007235519913/testRdd.fragment.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/javaAC4618965007235519913/testRdd.fragment.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/javaAC4618965007235519913/testRdd.fragment.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/javaAC4618965007235519913/testRdd.fragment.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/javaAC4618965007235519913/testRdd.fragment.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/javaAC4618965007235519913/testRdd.fragment.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/javaAC4618965007235519913/testRdd.fragment.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/javaAC4618965007235519913/testRdd.fragment.adam/_metadata
/tmp/adamTestMvnFJdRuV3/javaAC4618965007235519913/testRdd.fragment.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/3192543681477742546
/tmp/adamTestMvnFJdRuV3/3192543681477742546/ordered.sam
/tmp/adamTestMvnFJdRuV3/3192543681477742546/.ordered.sam.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite4175744934550297537
/tmp/adamTestMvnFJdRuV3/TempSuite8499993084513017323_2.fq
/tmp/adamTestMvnFJdRuV3/TempSuite8590742446533206963
/tmp/adamTestMvnFJdRuV3/5035856605370523857
/tmp/adamTestMvnFJdRuV3/5035856605370523857/unordered.sam
/tmp/adamTestMvnFJdRuV3/5035856605370523857/.unordered.sam.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3155029623016110867
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite7142948769130131826
/tmp/adamTestMvnFJdRuV3/TempSuite6315771475055283870.adam
/tmp/adamTestMvnFJdRuV3/TempSuite6315771475055283870.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite6315771475055283870.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6315771475055283870.adam/.part-00000-ae19377d-3183-46b2-b86c-c0407a11461f-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6315771475055283870.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite6315771475055283870.adam/part-00000-ae19377d-3183-46b2-b86c-c0407a11461f-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite6315771475055283870.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6315771475055283870.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6315771475055283870.adam/_header
/tmp/adamTestMvnFJdRuV3/TempSuite2536085511665573315
/tmp/adamTestMvnFJdRuV3/TempSuite3124534263994594838.adam
/tmp/adamTestMvnFJdRuV3/TempSuite3124534263994594838.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite3124534263994594838.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3124534263994594838.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3124534263994594838.adam/.part-00000-85183896-2a19-4df5-a102-2ca79887c05e-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3124534263994594838.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite3124534263994594838.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3124534263994594838.adam/part-00000-85183896-2a19-4df5-a102-2ca79887c05e-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite3124534263994594838.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3124534263994594838.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/TempSuite3124534263994594838.adam/_header
/tmp/adamTestMvnFJdRuV3/TempSuite3821751700045477215
/tmp/adamTestMvnFJdRuV3/TempSuite202443260608071743.adam
/tmp/adamTestMvnFJdRuV3/TempSuite202443260608071743.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite202443260608071743.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite202443260608071743.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite202443260608071743.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite202443260608071743.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite202443260608071743.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite202443260608071743.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite202443260608071743.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite202443260608071743.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite202443260608071743.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite202443260608071743.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite202443260608071743.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/TempSuite202443260608071743.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite202443260608071743.adam/_header
/tmp/adamTestMvnFJdRuV3/TempSuite2446116224597083357.fq
/tmp/adamTestMvnFJdRuV3/TempSuite2446116224597083357.fq/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite2446116224597083357.fq/part-00000
/tmp/adamTestMvnFJdRuV3/TempSuite2446116224597083357.fq/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2446116224597083357.fq/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6798087989537755003.sam
/tmp/adamTestMvnFJdRuV3/TempSuite4066782705480456692.adam
/tmp/adamTestMvnFJdRuV3/TempSuite4066782705480456692.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite4066782705480456692.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4066782705480456692.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite4066782705480456692.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4066782705480456692.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite4066782705480456692.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/TempSuite4066782705480456692.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4066782705480456692.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite4066782705480456692.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4066782705480456692.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4066782705480456692.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite4066782705480456692.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4066782705480456692.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4066782705480456692.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite4066782705480456692.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4066782705480456692.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4066782705480456692.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4066782705480456692.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite4066782705480456692.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite4066782705480456692.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite609071620944604855
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3576610242314456465.interval_list
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3576610242314456465.interval_list/_SUCCESS
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3576610242314456465.interval_list/part-00001
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3576610242314456465.interval_list/.part-00003.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3576610242314456465.interval_list/part-00000
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3576610242314456465.interval_list/part-00003
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3576610242314456465.interval_list/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3576610242314456465.interval_list/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3576610242314456465.interval_list/part-00002
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3576610242314456465.interval_list/.part-00002.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3576610242314456465.interval_list/.part-00001.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2913999019679392782
/tmp/adamTestMvnFJdRuV3/TempSuite3271626516389425105fragments.adam
/tmp/adamTestMvnFJdRuV3/TempSuite3271626516389425105fragments.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite3271626516389425105fragments.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3271626516389425105fragments.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite3271626516389425105fragments.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/TempSuite3271626516389425105fragments.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3271626516389425105fragments.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite3271626516389425105fragments.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3271626516389425105fragments.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3271626516389425105fragments.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite3271626516389425105fragments.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3271626516389425105fragments.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3271626516389425105fragments.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3271626516389425105fragments.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite3271626516389425105fragments.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/.FeatureDatasetFunctionsSuite7981822180348709984.gtf.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1772717051773129585
/tmp/adamTestMvnFJdRuV3/TempSuite6466721679832586963
/tmp/adamTestMvnFJdRuV3/TempSuite6537300306486605061
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite7060718458890892761.interval_list
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite7060718458890892761.interval_list/_SUCCESS
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite7060718458890892761.interval_list/part-00001
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite7060718458890892761.interval_list/.part-00003.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite7060718458890892761.interval_list/part-00000
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite7060718458890892761.interval_list/part-00003
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite7060718458890892761.interval_list/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite7060718458890892761.interval_list/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite7060718458890892761.interval_list/part-00002
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite7060718458890892761.interval_list/.part-00002.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite7060718458890892761.interval_list/.part-00001.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite6393934370835944825
/tmp/adamTestMvnFJdRuV3/TempSuite9164831318383345918.adam
/tmp/adamTestMvnFJdRuV3/TempSuite9164831318383345918.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite9164831318383345918.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite9164831318383345918.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite9164831318383345918.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite9164831318383345918.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite9164831318383345918.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite9164831318383345918.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite9164831318383345918.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite9164831318383345918.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite9164831318383345918.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite9164831318383345918.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite9164831318383345918.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite9164831318383345918.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite9164831318383345918.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite9164831318383345918.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite9164831318383345918.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite9164831318383345918.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite9164831318383345918.adam/_header
/tmp/adamTestMvnFJdRuV3/javaAC4207207187501509973
/tmp/adamTestMvnFJdRuV3/javaAC4207207187501509973/testRdd.sequences.adam
/tmp/adamTestMvnFJdRuV3/javaAC4207207187501509973/testRdd.sequences.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/javaAC4207207187501509973/testRdd.sequences.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/javaAC4207207187501509973/testRdd.sequences.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/javaAC4207207187501509973/testRdd.sequences.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/javaAC4207207187501509973/testRdd.sequences.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/javaAC4207207187501509973/testRdd.sequences.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/javaAC4207207187501509973/testRdd.sequences.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/javaAC4207207187501509973/testRdd.sequences.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/javaAC4207207187501509973/testRdd.sequences.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/javaAC4207207187501509973/testRdd.sequences.adam/_metadata
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite1219616087609213990.interval_list
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite1219616087609213990.interval_list/_SUCCESS
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite1219616087609213990.interval_list/part-00001
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite1219616087609213990.interval_list/.part-00003.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite1219616087609213990.interval_list/part-00000
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite1219616087609213990.interval_list/part-00003
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite1219616087609213990.interval_list/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite1219616087609213990.interval_list/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite1219616087609213990.interval_list/part-00002
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite1219616087609213990.interval_list/.part-00002.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite1219616087609213990.interval_list/.part-00001.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7909542702338227040
/tmp/adamTestMvnFJdRuV3/TempSuite7451962512409808122
/tmp/adamTestMvnFJdRuV3/TempSuite3845854960418302685
/tmp/adamTestMvnFJdRuV3/TempSuite5109312162033577861
/tmp/adamTestMvnFJdRuV3/small.vcf6458332945059510546.vcf
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite1220100475826619811
/tmp/adamTestMvnFJdRuV3/TempSuite2896151435134035252.bed
/tmp/adamTestMvnFJdRuV3/TempSuite2896151435134035252.bed/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite2896151435134035252.bed/part-00000
/tmp/adamTestMvnFJdRuV3/TempSuite2896151435134035252.bed/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2896151435134035252.bed/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8022786587214786433
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3441527704067752232
/tmp/adamTestMvnFJdRuV3/.TempSuite8196296290456981112_1.fq.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2746710577780240150
/tmp/adamTestMvnFJdRuV3/TempSuite4761308922211874576_2.fq
/tmp/adamTestMvnFJdRuV3/5157416561597304440
/tmp/adamTestMvnFJdRuV3/5157416561597304440/sorted-variants.lex.vcf
/tmp/adamTestMvnFJdRuV3/5157416561597304440/.sorted-variants.lex.vcf.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7247978519188789158
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite1462549401947816734.fasta
/tmp/adamTestMvnFJdRuV3/small.sam8052327650559772363.sam
/tmp/adamTestMvnFJdRuV3/TempSuite4571285669478979516.adam
/tmp/adamTestMvnFJdRuV3/TempSuite4571285669478979516.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite4571285669478979516.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4571285669478979516.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite4571285669478979516.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4571285669478979516.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite4571285669478979516.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4571285669478979516.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite4571285669478979516.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4571285669478979516.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4571285669478979516.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4571285669478979516.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite4571285669478979516.adam/_header
/tmp/adamTestMvnFJdRuV3/TempSuite800937057558404134
/tmp/adamTestMvnFJdRuV3/TempSuite4157108903467396640.bam
/tmp/adamTestMvnFJdRuV3/TempSuite6570804284234828566
/tmp/adamTestMvnFJdRuV3/TempSuite1384596408878682843.adam
/tmp/adamTestMvnFJdRuV3/TempSuite1384596408878682843.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite1384596408878682843.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1384596408878682843.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1384596408878682843.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite1384596408878682843.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1384596408878682843.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite1384596408878682843.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1384596408878682843.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite1384596408878682843.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1384596408878682843.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1384596408878682843.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1384596408878682843.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/TempSuite1384596408878682843.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite1384596408878682843.adam/_header
/tmp/adamTestMvnFJdRuV3/random.vcf7766607987024957450.vcf
/tmp/adamTestMvnFJdRuV3/TempSuite3078011743775508468
/tmp/adamTestMvnFJdRuV3/TempSuite6907492817781731349.adam
/tmp/adamTestMvnFJdRuV3/TempSuite6907492817781731349.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite6907492817781731349.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6907492817781731349.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite6907492817781731349.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/TempSuite6907492817781731349.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6907492817781731349.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite6907492817781731349.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6907492817781731349.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6907492817781731349.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite6907492817781731349.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6907492817781731349.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6907492817781731349.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6907492817781731349.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite6907492817781731349.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/TempSuite6627012339939122544
/tmp/adamTestMvnFJdRuV3/TempSuite5482820732554199356.bed
/tmp/adamTestMvnFJdRuV3/TempSuite5482820732554199356.bed/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite5482820732554199356.bed/part-00000
/tmp/adamTestMvnFJdRuV3/TempSuite5482820732554199356.bed/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5482820732554199356.bed/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7242601365808561947.adam
/tmp/adamTestMvnFJdRuV3/TempSuite7242601365808561947.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite7242601365808561947.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7242601365808561947.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite7242601365808561947.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/TempSuite7242601365808561947.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7242601365808561947.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite7242601365808561947.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7242601365808561947.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7242601365808561947.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite7242601365808561947.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7242601365808561947.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7242601365808561947.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7242601365808561947.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite7242601365808561947.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/TempSuite3349031899868061196
/tmp/adamTestMvnFJdRuV3/TempSuite6684157029370249890_1.fq
/tmp/adamTestMvnFJdRuV3/TempSuite6684157029370249890_1.fq/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite6684157029370249890_1.fq/part-00000
/tmp/adamTestMvnFJdRuV3/TempSuite6684157029370249890_1.fq/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6684157029370249890_1.fq/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8005596475468551924
/tmp/adamTestMvnFJdRuV3/TempSuite9208902869192641313
/tmp/adamTestMvnFJdRuV3/TempSuite119517590827912368
/tmp/adamTestMvnFJdRuV3/TempSuite98816787860232887
/tmp/adamTestMvnFJdRuV3/TempSuite6125257301082359110.adam
/tmp/adamTestMvnFJdRuV3/TempSuite6125257301082359110.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite6125257301082359110.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6125257301082359110.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6125257301082359110.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite6125257301082359110.adam/part-00000-6b363725-e452-4f3c-858c-ef491727f173-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite6125257301082359110.adam/.part-00000-6b363725-e452-4f3c-858c-ef491727f173-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6125257301082359110.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6125257301082359110.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6125257301082359110.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/TempSuite6125257301082359110.adam/_header
/tmp/adamTestMvnFJdRuV3/.SequenceDatasetSuite7440098550589962456.fasta.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7940218999406506731
/tmp/adamTestMvnFJdRuV3/TempSuite7084681501801378003.adam
/tmp/adamTestMvnFJdRuV3/TempSuite7084681501801378003.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite7084681501801378003.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7084681501801378003.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite7084681501801378003.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7084681501801378003.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite7084681501801378003.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7084681501801378003.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite7084681501801378003.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7084681501801378003.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite7084681501801378003.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite1754064590151958682.bed
/tmp/adamTestMvnFJdRuV3/TempSuite1754064590151958682.bed/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite1754064590151958682.bed/part-00000
/tmp/adamTestMvnFJdRuV3/TempSuite1754064590151958682.bed/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1754064590151958682.bed/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/random.vcf4664683167785963862.vcf
/tmp/adamTestMvnFJdRuV3/TempSuite3552148544004177300
/tmp/adamTestMvnFJdRuV3/4446382545446169387
/tmp/adamTestMvnFJdRuV3/4446382545446169387/sorted.vcf
/tmp/adamTestMvnFJdRuV3/4446382545446169387/.sorted.vcf.crc
/tmp/adamTestMvnFJdRuV3/TempSuite618532219242808350
/tmp/adamTestMvnFJdRuV3/TempSuite3135140252211152666.adam
/tmp/adamTestMvnFJdRuV3/TempSuite3135140252211152666.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite3135140252211152666.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3135140252211152666.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite3135140252211152666.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3135140252211152666.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite3135140252211152666.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3135140252211152666.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite3135140252211152666.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3135140252211152666.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3135140252211152666.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3135140252211152666.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite3135140252211152666.adam/_header
/tmp/adamTestMvnFJdRuV3/TempSuite651913573880651442.adam
/tmp/adamTestMvnFJdRuV3/TempSuite651913573880651442.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite651913573880651442.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite651913573880651442.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite651913573880651442.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite651913573880651442.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite651913573880651442.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/TempSuite651913573880651442.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite651913573880651442.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite651913573880651442.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite651913573880651442.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite651913573880651442.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite651913573880651442.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite651913573880651442.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite651913573880651442.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite651913573880651442.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite651913573880651442.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite651913573880651442.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite651913573880651442.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite651913573880651442.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite651913573880651442.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/5112784621621078562
/tmp/adamTestMvnFJdRuV3/5112784621621078562/.artificial.cram.crc
/tmp/adamTestMvnFJdRuV3/5112784621621078562/artificial.cram
/tmp/adamTestMvnFJdRuV3/TempSuite1706101604655404031.sam
/tmp/adamTestMvnFJdRuV3/small.sam4579686677597379803.sam
/tmp/adamTestMvnFJdRuV3/TempSuite7530526881175904758
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite4801000712403965046
/tmp/adamTestMvnFJdRuV3/unordered.sam43445019193441389.sam
/tmp/adamTestMvnFJdRuV3/TempSuite2501767683364036975
/tmp/adamTestMvnFJdRuV3/unordered.sam6975612780931027702.sam
/tmp/adamTestMvnFJdRuV3/TempSuite1923037016713368775.adam
/tmp/adamTestMvnFJdRuV3/TempSuite1923037016713368775.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite1923037016713368775.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1923037016713368775.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite1923037016713368775.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/TempSuite1923037016713368775.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1923037016713368775.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite1923037016713368775.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1923037016713368775.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1923037016713368775.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite1923037016713368775.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1923037016713368775.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1923037016713368775.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1923037016713368775.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite1923037016713368775.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/TempSuite4589280631602038459
/tmp/adamTestMvnFJdRuV3/TempSuite3744507512538980873.adam
/tmp/adamTestMvnFJdRuV3/TempSuite3744507512538980873.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite3744507512538980873.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3744507512538980873.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite3744507512538980873.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/TempSuite3744507512538980873.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3744507512538980873.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite3744507512538980873.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3744507512538980873.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3744507512538980873.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite3744507512538980873.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3744507512538980873.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3744507512538980873.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3744507512538980873.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite3744507512538980873.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/javaAC1540176930868827690
/tmp/adamTestMvnFJdRuV3/javaAC1540176930868827690/testRdd.feature.adam
/tmp/adamTestMvnFJdRuV3/javaAC1540176930868827690/testRdd.feature.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/javaAC1540176930868827690/testRdd.feature.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/javaAC1540176930868827690/testRdd.feature.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/javaAC1540176930868827690/testRdd.feature.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/javaAC1540176930868827690/testRdd.feature.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/javaAC1540176930868827690/testRdd.feature.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnFJdRuV3/javaAC1540176930868827690/testRdd.feature.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/javaAC1540176930868827690/testRdd.feature.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/javaAC1540176930868827690/testRdd.feature.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/javaAC1540176930868827690/testRdd.feature.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/javaAC1540176930868827690/testRdd.feature.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnFJdRuV3/javaAC1540176930868827690/testRdd.feature.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/javaAC1540176930868827690/testRdd.feature.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/javaAC1540176930868827690/testRdd.feature.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/javaAC1540176930868827690/testRdd.feature.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/javaAC1540176930868827690/testRdd.feature.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/javaAC1540176930868827690/testRdd.feature.adam/_metadata
/tmp/adamTestMvnFJdRuV3/javaAC1540176930868827690/testRdd.feature.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnFJdRuV3/bqsr1.sam7956483549464459716.sam
/tmp/adamTestMvnFJdRuV3/TempSuite4106000892843926439
/tmp/adamTestMvnFJdRuV3/TempSuite800937057558404134.adam
/tmp/adamTestMvnFJdRuV3/TempSuite800937057558404134.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite800937057558404134.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite800937057558404134.adam/.part-00000-c9827f3a-1951-47d8-af3c-5181f24ea892-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite800937057558404134.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/TempSuite800937057558404134.adam/.part-00002-c9827f3a-1951-47d8-af3c-5181f24ea892-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite800937057558404134.adam/part-00000-c9827f3a-1951-47d8-af3c-5181f24ea892-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite800937057558404134.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite800937057558404134.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite800937057558404134.adam/.part-00001-c9827f3a-1951-47d8-af3c-5181f24ea892-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite800937057558404134.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite800937057558404134.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite800937057558404134.adam/part-00002-c9827f3a-1951-47d8-af3c-5181f24ea892-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite800937057558404134.adam/part-00001-c9827f3a-1951-47d8-af3c-5181f24ea892-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite800937057558404134.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/TempSuite3996304178397460440.adam
/tmp/adamTestMvnFJdRuV3/TempSuite3996304178397460440.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite3996304178397460440.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3996304178397460440.adam/referenceName=1
/tmp/adamTestMvnFJdRuV3/TempSuite3996304178397460440.adam/referenceName=1/positionBin=169
/tmp/adamTestMvnFJdRuV3/TempSuite3996304178397460440.adam/referenceName=1/positionBin=169/.part-00001-5aaf0c9d-f2f6-41c4-b38f-19ba5253a979.c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3996304178397460440.adam/referenceName=1/positionBin=169/part-00001-5aaf0c9d-f2f6-41c4-b38f-19ba5253a979.c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite3996304178397460440.adam/referenceName=1/positionBin=14
/tmp/adamTestMvnFJdRuV3/TempSuite3996304178397460440.adam/referenceName=1/positionBin=14/part-00000-5aaf0c9d-f2f6-41c4-b38f-19ba5253a979.c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite3996304178397460440.adam/referenceName=1/positionBin=14/.part-00000-5aaf0c9d-f2f6-41c4-b38f-19ba5253a979.c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3996304178397460440.adam/referenceName=1/positionBin=240
/tmp/adamTestMvnFJdRuV3/TempSuite3996304178397460440.adam/referenceName=1/positionBin=240/.part-00002-5aaf0c9d-f2f6-41c4-b38f-19ba5253a979.c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3996304178397460440.adam/referenceName=1/positionBin=240/part-00002-5aaf0c9d-f2f6-41c4-b38f-19ba5253a979.c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite3996304178397460440.adam/referenceName=1/positionBin=0
/tmp/adamTestMvnFJdRuV3/TempSuite3996304178397460440.adam/referenceName=1/positionBin=0/part-00000-5aaf0c9d-f2f6-41c4-b38f-19ba5253a979.c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite3996304178397460440.adam/referenceName=1/positionBin=0/.part-00000-5aaf0c9d-f2f6-41c4-b38f-19ba5253a979.c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3996304178397460440.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3996304178397460440.adam/_partitionedByStartPos
/tmp/adamTestMvnFJdRuV3/TempSuite3996304178397460440.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite3996304178397460440.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3996304178397460440.adam/._partitionedByStartPos.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3996304178397460440.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/TempSuite8029470933550778612.adam
/tmp/adamTestMvnFJdRuV3/TempSuite8029470933550778612.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite8029470933550778612.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8029470933550778612.adam/referenceName=1
/tmp/adamTestMvnFJdRuV3/TempSuite8029470933550778612.adam/referenceName=1/positionBin=0
/tmp/adamTestMvnFJdRuV3/TempSuite8029470933550778612.adam/referenceName=1/positionBin=0/part-00000-98990e1b-ad3a-4c1d-9099-7e178f09defb.c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite8029470933550778612.adam/referenceName=1/positionBin=0/.part-00000-98990e1b-ad3a-4c1d-9099-7e178f09defb.c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8029470933550778612.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8029470933550778612.adam/_partitionedByStartPos
/tmp/adamTestMvnFJdRuV3/TempSuite8029470933550778612.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite8029470933550778612.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8029470933550778612.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8029470933550778612.adam/._partitionedByStartPos.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8029470933550778612.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/TempSuite8029470933550778612.adam/_header
/tmp/adamTestMvnFJdRuV3/TempSuite4336033094064110226.bed
/tmp/adamTestMvnFJdRuV3/TempSuite4336033094064110226.bed/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite4336033094064110226.bed/part-00000
/tmp/adamTestMvnFJdRuV3/TempSuite4336033094064110226.bed/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4336033094064110226.bed/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/4046289955024197996
/tmp/adamTestMvnFJdRuV3/4046289955024197996/.artificial.cram.crc
/tmp/adamTestMvnFJdRuV3/4046289955024197996/artificial.cram
/tmp/adamTestMvnFJdRuV3/882242752075800650
/tmp/adamTestMvnFJdRuV3/882242752075800650/unordered.sam
/tmp/adamTestMvnFJdRuV3/882242752075800650/.unordered.sam.crc
/tmp/adamTestMvnFJdRuV3/.FeatureDatasetFunctionsSuite1903699193579862888.bed.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3937429171926509711.adam
/tmp/adamTestMvnFJdRuV3/TempSuite3937429171926509711.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite3937429171926509711.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3937429171926509711.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite3937429171926509711.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/TempSuite3937429171926509711.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3937429171926509711.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite3937429171926509711.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3937429171926509711.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3937429171926509711.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite3937429171926509711.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3937429171926509711.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3937429171926509711.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3937429171926509711.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite3937429171926509711.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/TempSuite8187255164035820784
/tmp/adamTestMvnFJdRuV3/TempSuite3104536187266887951
/tmp/adamTestMvnFJdRuV3/TempSuite1310340958300664754.adam
/tmp/adamTestMvnFJdRuV3/TempSuite1310340958300664754.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite1310340958300664754.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1310340958300664754.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/TempSuite1310340958300664754.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite1310340958300664754.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1310340958300664754.adam/.part-00000-941645d9-4ced-4be1-b425-615f5b030af1-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1310340958300664754.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1310340958300664754.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1310340958300664754.adam/part-00000-941645d9-4ced-4be1-b425-615f5b030af1-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite1310340958300664754.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/random.vcf868284958311212335.vcf
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite1213495617090909874.gff3
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite1213495617090909874.gff3/_SUCCESS
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite1213495617090909874.gff3/part-00001
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite1213495617090909874.gff3/.part-00003.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite1213495617090909874.gff3/part-00000
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite1213495617090909874.gff3/part-00003
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite1213495617090909874.gff3/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite1213495617090909874.gff3/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite1213495617090909874.gff3/part-00002
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite1213495617090909874.gff3/.part-00002.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite1213495617090909874.gff3/.part-00001.crc
/tmp/adamTestMvnFJdRuV3/unordered.sam6485227847233789580.sam
/tmp/adamTestMvnFJdRuV3/TempSuite3104536187266887951.adam
/tmp/adamTestMvnFJdRuV3/TempSuite3104536187266887951.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite3104536187266887951.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3104536187266887951.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3104536187266887951.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite3104536187266887951.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3104536187266887951.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite3104536187266887951.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3104536187266887951.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite3104536187266887951.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3104536187266887951.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3104536187266887951.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3104536187266887951.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/TempSuite3104536187266887951.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite3104536187266887951.adam/_header
/tmp/adamTestMvnFJdRuV3/TempSuite202443260608071743
/tmp/adamTestMvnFJdRuV3/.TempSuite4217357186165896487_1.fq.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3017913954624069684
/tmp/adamTestMvnFJdRuV3/bqsr1969481443915731718
/tmp/adamTestMvnFJdRuV3/bqsr1969481443915731718/bqsr1.bam
/tmp/adamTestMvnFJdRuV3/bqsr1969481443915731718/.bqsr1.bam.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4285448702851294593
/tmp/adamTestMvnFJdRuV3/TempSuite1063702402375049278
/tmp/adamTestMvnFJdRuV3/TempSuite5949475325397951026.bed
/tmp/adamTestMvnFJdRuV3/TempSuite5949475325397951026.bed/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite5949475325397951026.bed/part-00000
/tmp/adamTestMvnFJdRuV3/TempSuite5949475325397951026.bed/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5949475325397951026.bed/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2501767683364036975reads12.sam_2
/tmp/adamTestMvnFJdRuV3/TempSuite5953079541268031757.adam
/tmp/adamTestMvnFJdRuV3/TempSuite5953079541268031757.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite5953079541268031757.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5953079541268031757.adam/part-00001-ab035252-5089-4ec8-8664-285143ef30dd-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite5953079541268031757.adam/.part-00000-ab035252-5089-4ec8-8664-285143ef30dd-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5953079541268031757.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite5953079541268031757.adam/.part-00002-ab035252-5089-4ec8-8664-285143ef30dd-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5953079541268031757.adam/part-00002-ab035252-5089-4ec8-8664-285143ef30dd-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite5953079541268031757.adam/part-00000-ab035252-5089-4ec8-8664-285143ef30dd-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite5953079541268031757.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5953079541268031757.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5953079541268031757.adam/.part-00001-ab035252-5089-4ec8-8664-285143ef30dd-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite5953079541268031757.adam/_header
/tmp/adamTestMvnFJdRuV3/javaAC6132442094498196426
/tmp/adamTestMvnFJdRuV3/javaAC6132442094498196426/testRdd.sequences.adam
/tmp/adamTestMvnFJdRuV3/javaAC6132442094498196426/testRdd.sequences.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/javaAC6132442094498196426/testRdd.sequences.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/javaAC6132442094498196426/testRdd.sequences.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/javaAC6132442094498196426/testRdd.sequences.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/javaAC6132442094498196426/testRdd.sequences.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/javaAC6132442094498196426/testRdd.sequences.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/javaAC6132442094498196426/testRdd.sequences.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/javaAC6132442094498196426/testRdd.sequences.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/javaAC6132442094498196426/testRdd.sequences.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/javaAC6132442094498196426/testRdd.sequences.adam/_metadata
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite4939900219915379429.narrowPeak
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite4939900219915379429.narrowPeak/_SUCCESS
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite4939900219915379429.narrowPeak/part-00001
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite4939900219915379429.narrowPeak/.part-00003.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite4939900219915379429.narrowPeak/part-00000
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite4939900219915379429.narrowPeak/part-00003
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite4939900219915379429.narrowPeak/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite4939900219915379429.narrowPeak/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite4939900219915379429.narrowPeak/part-00002
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite4939900219915379429.narrowPeak/.part-00002.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite4939900219915379429.narrowPeak/.part-00001.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4663189623412470613.adam
/tmp/adamTestMvnFJdRuV3/TempSuite4663189623412470613.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite4663189623412470613.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4663189623412470613.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4663189623412470613.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite4663189623412470613.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4663189623412470613.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite4663189623412470613.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4663189623412470613.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite4663189623412470613.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4663189623412470613.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4663189623412470613.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/TempSuite4663189623412470613.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite3993829068025618807.bed
/tmp/adamTestMvnFJdRuV3/TempSuite3993829068025618807.bed/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite3993829068025618807.bed/part-00000
/tmp/adamTestMvnFJdRuV3/TempSuite3993829068025618807.bed/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3993829068025618807.bed/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite5574793000316443140
/tmp/adamTestMvnFJdRuV3/TempSuite7873128911419729127
/tmp/adamTestMvnFJdRuV3/TempSuite770423997191342384
/tmp/adamTestMvnFJdRuV3/TempSuite1858821706357862114.adam
/tmp/adamTestMvnFJdRuV3/TempSuite1858821706357862114.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite1858821706357862114.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1858821706357862114.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/TempSuite1858821706357862114.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite1858821706357862114.adam/.part-00000-147b525f-46e2-42a8-9f1a-8718f4283e99-c000.snappy.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1858821706357862114.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1858821706357862114.adam/part-00000-147b525f-46e2-42a8-9f1a-8718f4283e99-c000.snappy.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite1858821706357862114.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1858821706357862114.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1858821706357862114.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/1599677757380-0
/tmp/adamTestMvnFJdRuV3/1599677757380-0/test.gvcf.vcf
/tmp/adamTestMvnFJdRuV3/1599677757380-0/.test.gvcf.vcf.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1063702402375049278.adam
/tmp/adamTestMvnFJdRuV3/TempSuite1063702402375049278.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite1063702402375049278.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1063702402375049278.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite1063702402375049278.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/TempSuite1063702402375049278.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1063702402375049278.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite1063702402375049278.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1063702402375049278.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1063702402375049278.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite1063702402375049278.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1063702402375049278.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1063702402375049278.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1063702402375049278.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite1063702402375049278.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/TempSuite3424691423213119504.bed
/tmp/adamTestMvnFJdRuV3/TempSuite3424691423213119504.bed/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite3424691423213119504.bed/part-00000
/tmp/adamTestMvnFJdRuV3/TempSuite3424691423213119504.bed/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/TempSuite3424691423213119504.bed/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite3874978352732186250
/tmp/adamTestMvnFJdRuV3/TempSuite6907492817781731349
/tmp/adamTestMvnFJdRuV3/TempSuite7419557363554514653
/tmp/adamTestMvnFJdRuV3/TempSuite7709996946053268279reads12.sam_2
/tmp/adamTestMvnFJdRuV3/6158539101794906251
/tmp/adamTestMvnFJdRuV3/6158539101794906251/ordered.sam
/tmp/adamTestMvnFJdRuV3/6158539101794906251/.ordered.sam.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite5752909366085762787
/tmp/adamTestMvnFJdRuV3/TempSuite5665198701892279127
/tmp/adamTestMvnFJdRuV3/TempSuite1858821706357862114
/tmp/adamTestMvnFJdRuV3/1418580970261028825
/tmp/adamTestMvnFJdRuV3/1418580970261028825/predicate.3.adam
/tmp/adamTestMvnFJdRuV3/1418580970261028825/predicate.3.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/1418580970261028825/predicate.3.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/1418580970261028825/predicate.3.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/1418580970261028825/predicate.3.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/1418580970261028825/predicate.3.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/1418580970261028825/predicate.3.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/1418580970261028825/predicate.3.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/1418580970261028825/predicate.3.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/1418580970261028825/predicate.3.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/1418580970261028825/predicate.3.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/1418580970261028825/predicate.3.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/1418580970261028825/predicate.3.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/1418580970261028825/predicate.3.adam/_metadata
/tmp/adamTestMvnFJdRuV3/1418580970261028825/predicate.3.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/TempSuite4845464615149423362.adam
/tmp/adamTestMvnFJdRuV3/TempSuite4845464615149423362.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite4845464615149423362.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4845464615149423362.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite4845464615149423362.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4845464615149423362.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite4845464615149423362.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4845464615149423362.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite4845464615149423362.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4845464615149423362.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4845464615149423362.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4845464615149423362.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite4845464615149423362.adam/_header
/tmp/adamTestMvnFJdRuV3/TempSuite2336852597605964344
/tmp/adamTestMvnFJdRuV3/TempSuite8590742446533206963.adam
/tmp/adamTestMvnFJdRuV3/TempSuite8590742446533206963.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite8590742446533206963.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8590742446533206963.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite8590742446533206963.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8590742446533206963.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite8590742446533206963.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8590742446533206963.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite8590742446533206963.adam/._header.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8590742446533206963.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8590742446533206963.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite8590742446533206963.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite8590742446533206963.adam/_header
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite7060718458890892761
/tmp/adamTestMvnFJdRuV3/TempSuite428617537557198231.fa
/tmp/adamTestMvnFJdRuV3/TempSuite428617537557198231.fa/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite428617537557198231.fa/part-00000
/tmp/adamTestMvnFJdRuV3/TempSuite428617537557198231.fa/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/TempSuite428617537557198231.fa/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/SliceDatasetSuite2438444251895632749.fasta
/tmp/adamTestMvnFJdRuV3/TempSuite3802174255388843270
/tmp/adamTestMvnFJdRuV3/TempSuite1049024630879925047
/tmp/adamTestMvnFJdRuV3/1599678444192-0
/tmp/adamTestMvnFJdRuV3/1599678444192-0/bamReads.adam
/tmp/adamTestMvnFJdRuV3/1599678444192-0/bamReads.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/1599678444192-0/bamReads.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/1599678444192-0/bamReads.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/1599678444192-0/bamReads.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/1599678444192-0/bamReads.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/1599678444192-0/bamReads.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/1599678444192-0/bamReads.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/1599678444192-0/bamReads.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/1599678444192-0/bamReads.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/1599678444192-0/bamReads.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/1599678444192-0/bamReads.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/1599678444192-0/bamReads.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/1599678444192-0/bamReads.adam/_metadata
/tmp/adamTestMvnFJdRuV3/1599678444192-0/bamReads.adam/_processingSteps.avro
/tmp/adamTestMvnFJdRuV3/TempSuite1049024630879925047.adam
/tmp/adamTestMvnFJdRuV3/TempSuite1049024630879925047.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite1049024630879925047.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1049024630879925047.adam/._samples.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1049024630879925047.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite1049024630879925047.adam/.part-r-00003.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1049024630879925047.adam/part-r-00001.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite1049024630879925047.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1049024630879925047.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite1049024630879925047.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1049024630879925047.adam/.part-r-00001.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1049024630879925047.adam/part-r-00002.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite1049024630879925047.adam/.part-r-00002.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1049024630879925047.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite1049024630879925047.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1049024630879925047.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite1049024630879925047.adam/_samples.avro
/tmp/adamTestMvnFJdRuV3/TempSuite1049024630879925047.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite1049024630879925047.adam/part-r-00003.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite2267616016608143555.adam
/tmp/adamTestMvnFJdRuV3/TempSuite2267616016608143555.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite2267616016608143555.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2267616016608143555.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite2267616016608143555.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2267616016608143555.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite2267616016608143555.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2267616016608143555.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite2267616016608143555.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2267616016608143555.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite2267616016608143555.adam/_metadata
/tmp/adamTestMvnFJdRuV3/small.vcf5749239957936170733.vcf
/tmp/adamTestMvnFJdRuV3/TempSuite14085009300287244
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite3293108480769442682.fastq
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite3293108480769442682.fastq/_SUCCESS
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite3293108480769442682.fastq/part-00001
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite3293108480769442682.fastq/.part-00003.crc
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite3293108480769442682.fastq/part-00000
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite3293108480769442682.fastq/part-00003
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite3293108480769442682.fastq/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite3293108480769442682.fastq/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite3293108480769442682.fastq/part-00002
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite3293108480769442682.fastq/.part-00002.crc
/tmp/adamTestMvnFJdRuV3/ReadDatasetSuite3293108480769442682.fastq/.part-00001.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4262460684449933744
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite4175744934550297537.gtf
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite4175744934550297537.gtf/_SUCCESS
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite4175744934550297537.gtf/part-00001
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite4175744934550297537.gtf/.part-00003.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite4175744934550297537.gtf/part-00000
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite4175744934550297537.gtf/part-00003
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite4175744934550297537.gtf/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite4175744934550297537.gtf/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite4175744934550297537.gtf/part-00002
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite4175744934550297537.gtf/.part-00002.crc
/tmp/adamTestMvnFJdRuV3/FeatureDatasetFunctionsSuite4175744934550297537.gtf/.part-00001.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4063634326602876162.bed
/tmp/adamTestMvnFJdRuV3/TempSuite4063634326602876162.bed/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite4063634326602876162.bed/part-00000
/tmp/adamTestMvnFJdRuV3/TempSuite4063634326602876162.bed/.part-00000.crc
/tmp/adamTestMvnFJdRuV3/TempSuite4063634326602876162.bed/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/8916385041373081451
/tmp/adamTestMvnFJdRuV3/8916385041373081451/.sorted.sam.crc
/tmp/adamTestMvnFJdRuV3/8916385041373081451/sorted.sam
/tmp/adamTestMvnFJdRuV3/TempSuite6375762109368032305.adam
/tmp/adamTestMvnFJdRuV3/TempSuite6375762109368032305.adam/_SUCCESS
/tmp/adamTestMvnFJdRuV3/TempSuite6375762109368032305.adam/._references.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6375762109368032305.adam/part-r-00000.gz.parquet
/tmp/adamTestMvnFJdRuV3/TempSuite6375762109368032305.adam/_readGroups.avro
/tmp/adamTestMvnFJdRuV3/TempSuite6375762109368032305.adam/._common_metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6375762109368032305.adam/_references.avro
/tmp/adamTestMvnFJdRuV3/TempSuite6375762109368032305.adam/.part-r-00000.gz.parquet.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6375762109368032305.adam/._processingSteps.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6375762109368032305.adam/_common_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite6375762109368032305.adam/._metadata.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6375762109368032305.adam/._SUCCESS.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6375762109368032305.adam/._readGroups.avro.crc
/tmp/adamTestMvnFJdRuV3/TempSuite6375762109368032305.adam/_metadata
/tmp/adamTestMvnFJdRuV3/TempSuite6375762109368032305.adam/_processingSteps.avro
rm -rf ${ADAM_MVN_TMP_DIR}
+ rm -rf /tmp/adamTestMvnFJdRuV3

find . -name pom.xml \
    -exec sed -i.bak \
    -e "s:sun.io.serialization.extendedDebugInfo=true -Djava.io.tmpdir=${ADAM_MVN_TMP_DIR}:sun.io.serialization.extendedDebugInfo=true:g" \
    {} \;
+ find . -name pom.xml -exec sed -i.bak -e 's:sun.io.serialization.extendedDebugInfo=true -Djava.io.tmpdir=/tmp/adamTestMvnFJdRuV3:sun.io.serialization.extendedDebugInfo=true:g' '{}' ';'
find . -name "*.bak" -exec rm -f {} \;
+ find . -name '*.bak' -exec rm -f '{}' ';'

# run integration tests

# make a temp directory
ADAM_TMP_DIR=$(mktemp -d -t adamTestXXXXXXX)
mktemp -d -t adamTestXXXXXXX
++ mktemp -d -t adamTestXXXXXXX
+ ADAM_TMP_DIR=/tmp/adamTestyG4njcn

# Just to be paranoid.. use a directory internal to the ADAM_TMP_DIR
ADAM_TMP_DIR=$ADAM_TMP_DIR/deleteMePleaseThisIsNoLongerNeeded
+ ADAM_TMP_DIR=/tmp/adamTestyG4njcn/deleteMePleaseThisIsNoLongerNeeded
mkdir $ADAM_TMP_DIR
+ mkdir /tmp/adamTestyG4njcn/deleteMePleaseThisIsNoLongerNeeded

# set the TMPDIR envar, which is used by python to choose where to make temp directories
export TMPDIR=${ADAM_TMP_DIR}
+ export TMPDIR=/tmp/adamTestyG4njcn/deleteMePleaseThisIsNoLongerNeeded
+ TMPDIR=/tmp/adamTestyG4njcn/deleteMePleaseThisIsNoLongerNeeded

pushd $PROJECT_ROOT
+ pushd /home/jenkins/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu/scripts/..
~/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu ~/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu

# Copy the jar into our temp space for testing
cp -r . $ADAM_TMP_DIR
+ cp -r . /tmp/adamTestyG4njcn/deleteMePleaseThisIsNoLongerNeeded
popd
+ popd
~/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu

pushd $ADAM_TMP_DIR
+ pushd /tmp/adamTestyG4njcn/deleteMePleaseThisIsNoLongerNeeded
/tmp/adamTestyG4njcn/deleteMePleaseThisIsNoLongerNeeded ~/workspace/ADAM-prb/HADOOP_VERSION/2.7.5/SCALA_VERSION/2.12/SPARK_VERSION/3.0.0/label/ubuntu

# what hadoop version are we on? format string for downloading spark assembly
if [[ $HADOOP_VERSION =~ ^2\.7 ]]; then
    HADOOP=hadoop2.7
else
    echo "Unknown Hadoop version."
    exit 1
fi
+ [[ 2.7.5 =~ ^2\.7 ]]
+ HADOOP=hadoop2.7

# set spark artifact string for downloading assembly
SPARK=spark-${SPARK_VERSION}
+ SPARK=spark-3.0.0
    
# download prepackaged spark assembly

# Spark 2.4.3+ and less than 3.0.0 needs special case for Scala 2.12
if [ ${SCALA_VERSION} == 2.12 ] && [ ${SPARK_VERSION} == 2.4.6 ]
then
    curl \
        -L "https://www.apache.org/dyn/mirrors/mirrors.cgi?action=download&filename=spark/${SPARK}/${SPARK}-bin-without-hadoop-scala-2.12.tgz" \
        -o ${SPARK}-bin-without-hadoop-scala-2.12.tgz

    tar xzvf ${SPARK}-bin-without-hadoop-scala-2.12.tgz
    export SPARK_HOME=${ADAM_TMP_DIR}/${SPARK}-bin-without-hadoop-scala-2.12

    curl \
        -L "https://www.apache.org/dyn/mirrors/mirrors.cgi?action=download&filename=hadoop/core/hadoop-2.7.7/hadoop-2.7.7.tar.gz" \
        -o hadoop-2.7.7.tar.gz

    tar xzvf hadoop-2.7.7.tar.gz

    # remove references to avro 1.7.x
    find hadoop-2.7.7 -name *.jar | grep avro | xargs rm

    # download avro 1.8.x
    #curl \
    #    -L "https://repo1.maven.org/maven2/org/apache/avro/avro/1.8.2/avro-1.8.2.jar" \
    #    -o hadoop-2.7.7/share/hadoop/common/avro-1.8.2.jar

    export SPARK_DIST_CLASSPATH=$(hadoop-2.7.7/bin/hadoop classpath)
else
    curl \
        -v \
        -L "https://www.apache.org/dyn/mirrors/mirrors.cgi?action=download&filename=spark/${SPARK}/${SPARK}-bin-${HADOOP}.tgz" \
        -o ${SPARK}-bin-${HADOOP}.tgz

    tar xzvf ${SPARK}-bin-${HADOOP}.tgz
    export SPARK_HOME=${ADAM_TMP_DIR}/${SPARK}-bin-${HADOOP}
fi
+ '[' 2.12 == 2.12 ']'
+ '[' 3.0.0 == 2.4.6 ']'
+ curl -v -L 'https://www.apache.org/dyn/mirrors/mirrors.cgi?action=download&filename=spark/spark-3.0.0/spark-3.0.0-bin-hadoop2.7.tgz' -o spark-3.0.0-bin-hadoop2.7.tgz
*   Trying 40.79.78.1...
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0* Connected to www.apache.org (40.79.78.1) port 443 (#0)
* ALPN, offering http/1.1
* Cipher selection: ALL:!EXPORT:!EXPORT40:!EXPORT56:!aNULL:!LOW:!RC4:@STRENGTH
* successfully set certificate verify locations:
*   CAfile: /home/jenkins/anaconda2/ssl/cacert.pem
  CApath: none
* TLSv1.2 (OUT), TLS header, Certificate Status (22):
} [5 bytes data]
* TLSv1.2 (OUT), TLS handshake, Client hello (1):
} [512 bytes data]
* TLSv1.2 (IN), TLS handshake, Server hello (2):
{ [113 bytes data]
* TLSv1.2 (IN), TLS handshake, Certificate (11):
{ [4639 bytes data]
* TLSv1.2 (IN), TLS handshake, Server key exchange (12):
{ [333 bytes data]
* TLSv1.2 (IN), TLS handshake, Server finished (14):
{ [4 bytes data]
* TLSv1.2 (OUT), TLS handshake, Client key exchange (16):
} [70 bytes data]
* TLSv1.2 (OUT), TLS change cipher, Client hello (1):
} [1 bytes data]
* TLSv1.2 (OUT), TLS handshake, Finished (20):
} [16 bytes data]
* TLSv1.2 (IN), TLS change cipher, Client hello (1):
{ [1 bytes data]
* TLSv1.2 (IN), TLS handshake, Finished (20):
{ [16 bytes data]
* SSL connection using TLSv1.2 / ECDHE-RSA-AES256-GCM-SHA384
* ALPN, server accepted to use http/1.1
* Server certificate:
*  subject: OU=Domain Control Validated; OU=PositiveSSL Wildcard; CN=*.apache.org
*  start date: Jul  1 00:00:00 2019 GMT
*  expire date: Jun 30 23:59:59 2021 GMT
*  subjectAltName: host "www.apache.org" matched cert's "*.apache.org"
*  issuer: C=GB; ST=Greater Manchester; L=Salford; O=Sectigo Limited; CN=Sectigo RSA Domain Validation Secure Server CA
*  SSL certificate verify ok.
} [5 bytes data]
> GET /dyn/mirrors/mirrors.cgi?action=download&filename=spark/spark-3.0.0/spark-3.0.0-bin-hadoop2.7.tgz HTTP/1.1
> Host: www.apache.org
> User-Agent: curl/7.49.0
> Accept: */*
> 
{ [5 bytes data]
< HTTP/1.1 302 Found
< Date: Wed, 09 Sep 2020 19:19:51 GMT
< Server: Apache/2.4.18 (Ubuntu)
< Location: https://mirrors.sonic.net/apache/spark/spark-3.0.0/spark-3.0.0-bin-hadoop2.7.tgz
< Cache-Control: max-age=3600
< Expires: Wed, 09 Sep 2020 20:19:51 GMT
< Content-Length: 0
< 

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
* Connection #0 to host www.apache.org left intact
* Issue another request to this URL: 'https://mirrors.sonic.net/apache/spark/spark-3.0.0/spark-3.0.0-bin-hadoop2.7.tgz'
*   Trying 157.131.0.16...
* Connected to mirrors.sonic.net (157.131.0.16) port 443 (#1)
* ALPN, offering http/1.1
* Cipher selection: ALL:!EXPORT:!EXPORT40:!EXPORT56:!aNULL:!LOW:!RC4:@STRENGTH
* successfully set certificate verify locations:
*   CAfile: /home/jenkins/anaconda2/ssl/cacert.pem
  CApath: none
* TLSv1.2 (OUT), TLS header, Certificate Status (22):
} [5 bytes data]
* TLSv1.2 (OUT), TLS handshake, Client hello (1):
} [512 bytes data]
* TLSv1.2 (IN), TLS handshake, Server hello (2):
{ [94 bytes data]
* TLSv1.2 (IN), TLS handshake, Certificate (11):
{ [4849 bytes data]
* TLSv1.2 (IN), TLS handshake, Server key exchange (12):
{ [589 bytes data]
* TLSv1.2 (IN), TLS handshake, Server finished (14):
{ [4 bytes data]
* TLSv1.2 (OUT), TLS handshake, Client key exchange (16):
} [70 bytes data]
* TLSv1.2 (OUT), TLS change cipher, Client hello (1):
} [1 bytes data]
* TLSv1.2 (OUT), TLS handshake, Finished (20):
} [16 bytes data]
* TLSv1.2 (IN), TLS change cipher, Client hello (1):
{ [1 bytes data]
* TLSv1.2 (IN), TLS handshake, Finished (20):
{ [16 bytes data]
* SSL connection using TLSv1.2 / ECDHE-RSA-AES128-GCM-SHA256
* ALPN, server did not agree to a protocol
* Server certificate:
*  subject: CN=mirrors.sonic.net
*  start date: Jan 23 00:00:00 2020 GMT
*  expire date: Jan 22 23:59:59 2022 GMT
*  subjectAltName: host "mirrors.sonic.net" matched cert's "mirrors.sonic.net"
*  issuer: C=GB; ST=Greater Manchester; L=Salford; O=Sectigo Limited; CN=Sectigo RSA Domain Validation Secure Server CA
*  SSL certificate verify ok.
} [5 bytes data]
> GET /apache/spark/spark-3.0.0/spark-3.0.0-bin-hadoop2.7.tgz HTTP/1.1
> Host: mirrors.sonic.net
> User-Agent: curl/7.49.0
> Accept: */*
> 
{ [5 bytes data]
< HTTP/1.1 404 Not Found
< Date: Wed, 09 Sep 2020 19:19:51 GMT
< Server: Apache/2.4.6 (CentOS)
< Content-Length: 335
< Content-Type: text/html; charset=iso-8859-1
< 
{ [5 bytes data]

100   335  100   335    0     0   1061      0 --:--:-- --:--:-- --:--:--  1061
* Connection #1 to host mirrors.sonic.net left intact
+ tar xzvf spark-3.0.0-bin-hadoop2.7.tgz

gzip: stdin: not in gzip format
tar: Child returned status 1
tar: Error is not recoverable: exiting now
Build step 'Execute shell' marked build as failure
Recording test results
Publishing Scoverage XML and HTML report...
null
Setting commit status on GitHub for https://github.com/bigdatagenomics/adam/commit/a30a822f2f1fae4c474b307d1f73ba8b63ce8f37
Finished: FAILURE